BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018270
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 9/230 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCD 83
V+VL + NF+ V L+EFYAPWCGHCK+ APEYEK+ K K + + K+D
Sbjct: 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNV 143
L S++ V GYPTI+ KG + YEG R+ E + V + P
Sbjct: 77 SASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPD--WTPPPEVT 132
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD 202
+VLT +NFDE+V D + +LVEFYAPWCGHCK LAP YEK A + + +A +DA
Sbjct: 133 LVLTKENFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 191
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
DLA+++ VSG+PTLK F KG +Y G R+ V ++ E+ G +
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAA 239
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANL 199
+ V+VL NFD V DK VL+EFYAPWCGHCK AP YEK+A +D + VA +
Sbjct: 15 NGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
DA LA ++ VSG+PT+K KG +Y G R E+ V+ + E
Sbjct: 74 DATSASVLASRFDVSGYPTIKILKKGQ--AVDYEGSRTQEEIVAKVRE 119
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V V+ A+NFDEIV +++KDVL+EFYAPWCGHCKNL P Y+++ + + ++V+A +DA
Sbjct: 29 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFI 245
D+ Y V GFPT+ F P K + ++Y GGR+L DF+S++
Sbjct: 89 A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 131
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
V V+ +NF++ V +++ L+EFYAPWCGHCK L P+Y++LG K +++I K+D
Sbjct: 29 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 84 EHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEGGT 132
+ + S Y V+G+PTI + P L PKKYEG R Y+ E +
Sbjct: 89 AN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATS 137
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V V+ A+NFDEIV +++KDVL+EFYAPWCGHCKNL P Y+++ + + ++V+A +DA
Sbjct: 354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 413
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKC 249
D+ Y V GFPT+ F P K + ++Y GGR+L DF+S++ +
Sbjct: 414 A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA 460
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
Query: 24 DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
DV+ LT+DNFE + A LVEF+APWCGH K+LAPEYE K V + KV
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVP 140
DC + + C+KYGV GYPT++ F G E Y+GPR+ + + ++ + G P
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAG--------P 110
Query: 141 SNVVVLTADNFDEIVLDKSKDVL 163
++V + T + F + + DK ++
Sbjct: 111 ASVPLRTEEEFKKFISDKDASIV 133
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
V V+ +NF++ V +++ L+EFYAPWCGHCK L P+Y++LG K +++I K+D
Sbjct: 354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 413
Query: 84 EHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEG 130
+ + S Y V+G+PTI + P L PKKYEG R Y+ E
Sbjct: 414 AN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA 460
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 11/117 (9%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
S+V+ LT DNF+ + D +LVEF+APWCGH K LAP YE AAA L+ V +A
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYE--AAATRLKGIVPLAK 58
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 252
+D + KYGVSG+PTLK F +DGEE Y G R + VS + ++ G +
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+DDV+ LT NF +EV Q G LVEFYAPWCGHC++L PE++K + K V +G V
Sbjct: 16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVGAV 73
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 124
+ D+H+SL +YGVQG+PTI+ F +P+ Y+G R+ EA+ +
Sbjct: 74 NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
+V+ LT NF+ V+ LVEFYAPWCGHC+ L P ++K A A L+D V V ++A
Sbjct: 18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA--LKDVVKVGAVNA 75
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242
DK++ L +YGV GFPT+K F E+Y GGR E V
Sbjct: 76 DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 7/109 (6%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANL 199
V V+ A N++EIVLD +KDVL+EFYAPWCGHCK LAP YE++ A + +D VV+A +
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFINE 247
DA D+ ++ + GFPT+K +P G K Y G R +ED + FI E
Sbjct: 69 DATA-NDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 8/111 (7%)
Query: 25 VVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK---SVLIGKV 80
V V+ N+ + V D + L+EFYAPWCGHCK LAP+YE+LGA + K++ V+I KV
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYVNNEG 130
D + +QG+PTI+ +P G+ +P Y G R+ E L +++ G
Sbjct: 69 DATANDVPDE---IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG 116
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 6/111 (5%)
Query: 24 DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
DV+ LT+DNFE + A LVEF+APWCGHCK+LAPEYE K V + KV
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG 131
DC + + C+KYGV GYPT++ F G E Y+GPR+ + + ++ + G
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAG 109
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
S+V+ LT DNF+ + D +LVEF+APWCGHCK LAP YE AAA L+ V +A
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAK 58
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 252
+D + KYGVSG+PTLK F +DGEE Y G R + VS + ++ G +
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 13/212 (6%)
Query: 15 LFFVSALAD-DVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFK 70
L F+ L + VV LT F + V Q D +V+FY+PW + L PE++++ +
Sbjct: 534 LEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 71 KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130
+ +G VDC ++ S C++ VQ YP I+++P+ S + +Y A + + G
Sbjct: 594 GL--INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWG 651
Query: 131 GTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL 190
+ +P + LT F+E VL +V+FYAPW G +N AP +E +A +
Sbjct: 652 -----LGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR--MI 704
Query: 191 EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222
+ V +D Y +K G+ +P++K +
Sbjct: 705 KGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY 736
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 21/200 (10%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
LV+F+APW + L PE K AS + +G +DC H+ LC+ Y +Q YPT F
Sbjct: 459 LVDFFAPWSPPSRALLPELRK--ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF 516
Query: 104 PKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKD-- 161
+ S+ +YEG S E + E++ + PS VV LT F+E+V + D
Sbjct: 517 NQSSIH--EYEGHHSAEQILEFIEDLRN--------PS-VVSLTPSTFNELVKQRKHDEV 565
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
+V+FY+PW + L P ++++A TL + V ++D +Y + V +P ++F
Sbjct: 566 WMVDFYSPWSHPSQVLMPEWKRMAR--TLTGLINVGSVDCGQYHSFCTQENVQRYPEIRF 623
Query: 222 FPKGNKDGEEY----GGGRD 237
+P+ + +Y G RD
Sbjct: 624 YPQKSSKAYQYHSYNGWNRD 643
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 16/203 (7%)
Query: 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGKVDC 82
+++ L F+ V V FY+P H LAP + + K+ +L IG V+C
Sbjct: 117 EIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFA---KEVDGLLRIGAVNC 173
Query: 83 DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSN 142
+ + LC GV YP++ F G + KY G RS E+L + + V S
Sbjct: 174 GDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFA---------MQHVRST 223
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V L+ NF + + + V + +C ++ + ++ + L+ V V +D D
Sbjct: 224 VTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCD 282
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
L + + T +FP G
Sbjct: 283 AQDSLCKSLDTTA-STTAYFPPG 304
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 12 TLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK 71
+L F + + V L+ NF + A V + +C + +L S
Sbjct: 211 SLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGML 270
Query: 72 AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107
V +G VDCD SLC T +FP G+
Sbjct: 271 DGLVNVGWVDCDAQDSLCKSLDTTA-STTAYFPPGA 305
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V V+ FD IV+D KDVL+EFYAPWCGHCK L P Y + + + D+V+A +DA
Sbjct: 9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT 68
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 260
++Y V GFPT+ F P G+K + GG RDLE FI+E K +L+
Sbjct: 69 ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELS 128
Query: 261 STA 263
+
Sbjct: 129 GPS 131
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI 100
+ L+EFYAPWCGHCK+L P Y LG +K K ++I K+D + +Y V+G+PTI
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 101 QWFPKGSLE-PKKYE-GPRSTEALAEYVN 127
+ P G + P K+E G R E L+++++
Sbjct: 86 YFAPSGDKKNPIKFEGGNRDLEHLSKFID 114
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLD 200
+V+VL NF E L K +LVEFYAPWCGHCK LAP Y K A E ++ +A +D
Sbjct: 8 HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 252
A + DLA++YGV G+PT+KFF G+ +EY GR+ +D V+++ ++ G +
Sbjct: 67 ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVD 81
D V+VL + NF + + + LVEFYAPWCGHCK LAPEY K K S + + KVD
Sbjct: 7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 82 CDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEGG 131
E L +YGV+GYPTI++F G + PK+Y R + + ++ G
Sbjct: 67 ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG 117
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASF-KKAKSVLIGKVDCD 83
+ LT+DNF+ V LVEFYAPWCGHCKKLAPEYEK K++ + + KVD
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT 132
E L ++ V GYPT++ F KG P Y GPR + +Y+ + G+
Sbjct: 69 EQTDLAKRFDVSGYPTLKIFRKG--RPFDYNGPREKYGIVDYMIEQSGS 115
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDA 201
+ LT DNFD++V + + +LVEFYAPWCGHCK LAP YEK A + + +A +DA
Sbjct: 9 TLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 67
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 251
+ DLA+++ VSG+PTLK F KG +Y G R+ V ++ E+ G+
Sbjct: 68 TEQTDLAKRFDVSGYPTLKIFRKGRP--FDYNGPREKYGIVDYMIEQSGS 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVANL 199
V VL NFD V DK VL+EFYAPWCGHCK AP YEK+A+ TL+D+ + VA +
Sbjct: 19 VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIAS--TLKDNDPPIAVAKI 75
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQL 259
DA LA K+ VSG+PT+K KG +Y G R E+ V+ + E ++
Sbjct: 76 DATSASMLASKFDVSGYPTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWTPPPEV 133
Query: 260 TS 261
TS
Sbjct: 134 TS 135
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCD 83
V VL + NF+ V L+EFYAPWCGHCK+ APEYEK+ ++ K + + K+D
Sbjct: 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
L SK+ V GYPTI+ KG + Y+G R+ E + V
Sbjct: 79 SASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKV 119
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
VV L D+F + + L EF+APWCGHCK +APEY K + + K++ + ++DC E
Sbjct: 16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTE 74
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEPK-KYEGPRSTEALAEYVNNEGGTNVKIAA 138
++ LC ++ + G+P+++ F + YEGPR+ EA+ +++ + V + A
Sbjct: 75 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVA 129
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANL 199
S+V L N DEIV D KDVLV +YAPWCGHCK LAPTY+++A + DV++A L
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRDGKG 257
D ++ + G+PT+ +P G K + Y G R L+ FI E DGK
Sbjct: 418 --DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
+A S VV L D+F+E + +S D VL EF+APWCGHCKN+AP Y K AA +E ++
Sbjct: 9 VAPEDSAVVKLATDSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVK-AAETLVEKNI 65
Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 245
+A +D + +DL ++ + GFP+LK F + + +Y G R E V F+
Sbjct: 66 TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPT 99
+ LV +YAPWCGHCK+LAP Y++L ++ A S VLI K+D E+ ++GYPT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPT 434
Query: 100 IQWFPKG-SLEPKKYEGPRSTEALAEYVNNEGGTNV 134
I +P G E Y+G RS ++L +++ G +V
Sbjct: 435 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDV 470
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V VL NF+++ D+ K+V VEFYAPWCGHCK LAP ++K+ + +++V+A +D+
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 203 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 257
+ E V FPTLKFFP ++ +Y G R L+ F F+ +DG G
Sbjct: 311 ANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE---SGGQDGAG 361
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V VL NF+++ D+ K+V VEFYAPWCGHCK LAP ++K+ + +++V+A +D+
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
Query: 203 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFI 245
+ E V FPTLKFFP ++ +Y G R L+ F F+
Sbjct: 69 --ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 25 VVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
V VL NFE + + VEFYAPWCGHCK+LAP ++KLG ++K ++++I K+D
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPK-KYEGPRSTEALAEYV 126
++ K V +PT+++FP + Y G R+ + +++
Sbjct: 69 ANEVEAVK--VHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANL 199
+V+ LT D+FD+ VLD +VEFYAPWCGHCKNL P + A+ + V +A +
Sbjct: 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 243
DA + LA +YG+ GFPT+K F KG +Y GGR D VS
Sbjct: 68 DATVNQVLASRYGIRGFPTIKIFQKGESP-VDYDGGRTRSDIVS 110
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 19 SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAK--SV 75
S + DV+ LT+D+F+K V +VEFYAPWCGHCK L PE+ + K+ V
Sbjct: 3 SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62
Query: 76 LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118
+ VD ++ L S+YG++G+PTI+ F KG P Y+G R+
Sbjct: 63 KLAAVDATVNQVLASRYGIRGFPTIKIFQKGE-SPVDYDGGRT 104
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLIGK 79
L V+ LTE+NF+ + + ++FYAPWCGHCK LAP +E+L F V I +
Sbjct: 3 LGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61
Query: 80 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
VDC +++CSKY V+GYPT+ F +G + ++ G R ++L +V
Sbjct: 62 VDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANL 199
S V+ LT +NFD+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +
Sbjct: 5 STVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
D +++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 63 DCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 19 SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLI 77
S + V+ LTE+NF+ + + ++FYAPWCGHCK LAP +E+L F V I
Sbjct: 3 SGSSGTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 61
Query: 78 GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
+VDC +++CSKY V+GYPT+ F +G + ++ G R ++L +V
Sbjct: 62 AEVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLD 200
V+ LT +NFD+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +D
Sbjct: 8 TVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 65
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
+++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 66 CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLIGKVDCD 83
V+ LTE+NF+ + + ++FYAPWCGHCK LAP +E+L F V I +VDC
Sbjct: 2 VLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
+++CSKY V+GYPT+ F +G + ++ G R ++L +V
Sbjct: 61 AERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLD 200
V+ LT +NFD+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +D
Sbjct: 1 TVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 58
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
+++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 59 CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEK----LGASFKKAKSVL 76
L ++ L +N ++ + ALV FYA WC + L P +E+ + F V+
Sbjct: 3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVV 62
Query: 77 IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
+VDCD+H + +Y + YPT++ F G ++Y G RS +ALA+Y+ + ++
Sbjct: 63 FARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQ 121
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK----VAAAFTLEDDVVV 196
S + L +N DEI L+ + LV FYA WC + L P +E+ + F E+ VV
Sbjct: 5 SEITSLDTENIDEI-LNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
A +D D++ D+A++Y +S +PTLK F G EY G R ++ +I ++
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
LT +FD+ + + + LVEFYAPWCGHCK L+ T+ K A V N D +K K
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 206 DLAEKYGVSGFPTLKFFPKGNKD----------------GEEYGGGRDLEDFVSF 244
L KY V+GFPTL F D E Y G R L V F
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 35/213 (16%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
LT +F+K + + +LVEFYAPWCGHCKKL+ + K V D +++K
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 87 SLCSKYGVQGYPTIQWFPKGSLEPKK----------------YEGPRSTEALAEYVNNEG 130
+LC+KY V G+PT+ F ++ K Y G R+ + ++ +
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141
Query: 131 GTNVK-----------IAAVPSNVVVLTA--DNFDEIVLDKSKDVL--VEFYAPWCGHCK 175
+ VK + P VVL + D + + D L +FY+ K
Sbjct: 142 RSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSISNKKLK 201
Query: 176 NLA---PTYEKVAAAFTLEDDVVVANLDADKYK 205
L PTYEK F V+ +DK K
Sbjct: 202 QLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSK 234
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV----- 194
PS VV LT + FD IV+D KDV V +Y PW H AA L DD+
Sbjct: 14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHS----------VAAMRLWDDLSMSQS 63
Query: 195 --------VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 245
V A +D +KY D+ E+ VSGFPT++++ + +K EY G R L SF+
Sbjct: 64 QKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI---GKV 80
VV LT++ F+ V ++ V +Y PW H ++ L S + ++ L ++
Sbjct: 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARI 76
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPK-GSLEPKKYEGPRSTEALAEYV 126
D +++ + + V G+PT++++ + EP +Y G R + +V
Sbjct: 77 DGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
+T D+F++ VL K VLV+F+A WCG C+ +AP+ E +AA + D + + L+ D+
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENP 67
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVS 243
A KYGV PTL + G G RDLEDF++
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 19 SALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
S +A + +T+D+FE++V D+ LV+F+A WCG C+++AP E + A + + I
Sbjct: 1 SHMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEI 58
Query: 78 GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 108
K++ DE+ +KYGV PT+ + G +
Sbjct: 59 VKLNIDENPGTAAKYGVMSIPTLNVYQGGEV 89
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCGHCK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCGHCK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
++D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ + + K
Sbjct: 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAK 67
Query: 80 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAV 139
++ D++ KYG++G PT+ F G + K G S L E+++ N+ +A+
Sbjct: 68 LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD----ANLAGSAM 122
Query: 140 PSNVVVL 146
S V+VL
Sbjct: 123 ESTVMVL 129
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 71
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 72 QNPGTAPKYGIRGIPTLLLFKNG 94
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP E++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP E++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 150 NFDEIVLDKSK----DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
D +L +++ +LV+F+APWCG C+ +AP ++ AAA TL V +A +D +
Sbjct: 51 GIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQ--AAAATLAGQVRLAKIDTQAHP 108
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 251
+A ++ + G P F KG ++ G R + V F+ K G
Sbjct: 109 AVAGRHRIQGIPAFILFHKG-RELARAAGARPASELVGFVRGKLGA 153
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
LV+F+APWCG C+++AP+++ A+ A V + K+D H ++ ++ +QG P F
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATL--AGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 104 PKGSLEPKKYEGPRSTEALAEYVNNEGGTN 133
KG E + G R L +V + G
Sbjct: 126 HKGR-ELARAAGARPASELVGFVRGKLGAR 154
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
+ A KYG+ G PTL F G+ + G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGDVAATKVG 92
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGDVAATKV-GALSKGQLKEFLD 104
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LTED+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K++ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKLNID 61
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
++ KYG++G PT+ F G + K G S L E+++
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 208
D F +VL+ S VLV+F+APWCG C+ +AP +++A + +D + L+ D+ ++A
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDESPNVA 66
Query: 209 EKYGVSGFPTLKFFPKGNKDGEEYGGG 235
+YG+ PT+ F KG K E G
Sbjct: 67 SEYGIRSIPTIMVF-KGGKKCETIIGA 92
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 28 LTEDNFEKEVGQDR-GALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCDEH 85
+ +D F+ V + LV+F+APWCG C+ +AP +++ +K K K V K++ DE
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV---KLNTDES 62
Query: 86 KSLCSKYGVQGYPTIQWFPKG 106
++ S+YG++ PTI F G
Sbjct: 63 PNVASEYGIRSIPTIMVFKGG 83
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 23 DDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD 81
D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKLN 59
Query: 82 CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 112
+ D++ KYG++G PT+ F G + K
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAACKV-GALSKGQLKEFLD 104
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 112
+ D++ KYG++G PT+ F G + K
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
NV V+T +N+ E++ D ++EFYAPWC C+NL P +E A + + +V +A +D
Sbjct: 8 NVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIAKVDV 63
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINEK 248
+ L+ ++ ++ PT+ KDGE Y G R +DF++FI++K
Sbjct: 64 TEQPGLSGRFIINALPTIYHC----KDGEFRRYQGPRTKKDFINFISDK 108
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 19 SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG 78
S + +V V+T++N+ + + D ++EFYAPWC C+ L PE+E A + + V I
Sbjct: 3 SGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIA 59
Query: 79 KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
KVD E L ++ + PTI G ++Y+GPR+ + ++++
Sbjct: 60 KVDVTEQPGLSGRFIINALPTIYHCKDGEF--RRYQGPRTKKDFINFISD 107
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+FE +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+F+ VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP + +A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP + + ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 62
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 63 QNPGTAPKYGIRGTPTLLLFKNG 85
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 59
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 60 NIDQNPGTAPKYGIRGTPTLLLFKNGEVAATKV-GALSKGQLKEFLD 105
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ +T D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ +T+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ A+V+FYA WCG CK +AP E+L + A + I KV+ D+ L +G+QG PT
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQGIPT 108
Query: 100 IQWFPKGSLEPKKYEGPRSTEALAEYVN 127
I WF EP+ G S E L Y++
Sbjct: 109 I-WFVPMKGEPQVNMGALSKEQLKGYID 135
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K +V+FYA WCG CK +AP E+++ + + + ++ DK +LA +G+ G PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 220 KFFP 223
F P
Sbjct: 110 WFVP 113
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG C+ +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG C+ +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT ++FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+++F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
L + LT F ++V Q + +V+FYAPWCG C+ APE+E L K V GK
Sbjct: 1 LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGK 58
Query: 80 VDCDEHKSLCSKYGVQGYPTIQWF 103
VDC + C K G++ YP+++ +
Sbjct: 59 VDCQAYPQTCQKAGIKAYPSVKLY 82
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
+P + LT F+E VL +V+FYAPWCG C+N AP +E +A ++ V
Sbjct: 1 LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR--MIKGKVRAGK 58
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFP--KGNKD-GEEYGGGRDLEDFVSFINEKCGT 251
+D Y +K G+ +P++K + + K EE RD + + I K T
Sbjct: 59 VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 114
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ PTL F G
Sbjct: 62 QNPGTAPKYGIRSIPTLLLFKNG 84
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++ PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRSIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG K +AP +++A + + + VA L+ D
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKLNID 81
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 82 QNPGTAPKYGIRGIPTLLLFKNG 104
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG K +AP +++ ++ +V K+
Sbjct: 21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTV--AKL 78
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 79 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 124
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
+V+ +T +NF++ VL K VLV+F+APWCG C+ +AP E++A + E V V ++
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNV 59
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKG 225
D+ + A +YG+ PTL F G
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKNG 83
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
V+ +T++NFE+EV D+ LV+F+APWCG C+ +AP E+L ++ V+ V D
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNV--D 60
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
E+ + ++YG++ PT+ F G + + G + EAL E ++
Sbjct: 61 ENPNTAAQYGIRSIPTLLLFKNGQV-VDRLVGAQPKEALKERID 103
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WC CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WC CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG K +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG K +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDVVVANLDA 201
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAKLNI 61
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKG 225
D+ A KYG+ G PTL F G
Sbjct: 62 DQNPGTAPKYGIRGIPTLLLFKNG 85
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGH-CKKLAPEYEKLGASFKKAKSVLIGK 79
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++ ++ +V K
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTV--AK 58
Query: 80 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
++ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 105
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ A+V+FYA WCG CK +AP E+L + A + I KV+ D+ L +G+Q PT
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQSIPT 108
Query: 100 IQWFPKGSLEPKKYEGPRSTEALAEYVN 127
I WF EP+ G S E L Y++
Sbjct: 109 I-WFVPMKGEPQVNMGALSKEQLKGYID 135
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K +V+FYA WCG CK +AP E+++ + + + ++ DK +LA +G+ PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 220 KFFP 223
F P
Sbjct: 110 WFVP 113
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WCG CK +A +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WCG CK +A +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
S + +T +F VL +K VLV+F+A WCG CK +AP E++A D+ VA LD
Sbjct: 7 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLD 64
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 246
D + A + V PTL F G G R+L D V +N
Sbjct: 65 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
+T+ +F +V ++ LV+F+A WCG CK +AP E++ ++A + + K+D D +
Sbjct: 12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT--ERATDLTVAKLDVDTNP 69
Query: 87 SLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
+ V PT+ F G +P K+ G + AL
Sbjct: 70 ETARNFQVVSIPTLILFKDG--QPVKRIVGAKGKAAL 104
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
S + +T +F VL +K VLV+F+A WCG CK +AP E++A D+ VA LD
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLD 69
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 246
D + A + V PTL F G G R+L D V +N
Sbjct: 70 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
+T+ +F +V ++ LV+F+A WCG CK +AP E++ ++A + + K+D D +
Sbjct: 17 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT--ERATDLTVAKLDVDTNP 74
Query: 87 SLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
+ V PT+ F G +P K+ G + AL
Sbjct: 75 ETARNFQVVSIPTLILFKDG--QPVKRIVGAKGKAAL 109
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
+ LT+ NF++ + D+ LV+F+A WCG C+ +AP E+ + A V + K++ DE+
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86 KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
S++G+ PT+ F KG K+ G + E L
Sbjct: 61 PETTSQFGIMSIPTLILF-KGGRPVKQLIGYQPKEQL 96
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
+ LT NF + + K VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
+ LT+ NF++ + D+ LV+F+A WCG C+ +AP E+ + A V + K++ DE+
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86 KSLCSKYGVQGYPTIQWFPKGSLEPKK 112
S++G+ PT+ F G EP K
Sbjct: 61 PETTSQFGIMSIPTLILFKGG--EPVK 85
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
+ LT NF + + K VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+++F+A WCG CK ++P +++ F D+VVV +D D+ +D+A +Y +S PT
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTF 83
Query: 220 KFFPKGNKDGEEYGG--GRDLEDFV 242
F G K EE+ G + LED +
Sbjct: 84 VFLKNGVK-VEEFAGANAKRLEDVI 107
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+++F+A WCG CK ++P+ +L F A +V++ KVD DE + + +Y + PT +
Sbjct: 29 VLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTFVFL 86
Query: 104 PKG 106
G
Sbjct: 87 KNG 89
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+++F+A WCG CK ++P +++ F D+VVV +D D+ +D+A +Y +S PT
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTF 78
Query: 220 KFFPKGNKDGEEYGG--GRDLEDFV 242
F G K EE+ G + LED +
Sbjct: 79 VFLKNGVK-VEEFAGANAKRLEDVI 102
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102
+++F+A WCG CK ++P+ +L F A +V++ KVD DE + + +Y + PT +
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTFVF 80
Query: 103 FPKG 106
G
Sbjct: 81 LKNG 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGKVDC 82
+++ L F+ V V FY+P C HC LAP + + K+ +L IG V+C
Sbjct: 98 EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFA---KEVDGLLRIGAVNC 154
Query: 83 DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 125
+ + LC GV YP++ F G + KY G RS E+L +
Sbjct: 155 GDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAF 196
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ L FD V + + V FY+P C HC +LAPT+ + A + N D
Sbjct: 99 IITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 244
+ L GV+ +P+L F G +Y G R E V+F
Sbjct: 158 RM--LCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAF 196
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
L + NFDE + K+K V+V+F+A WC C LAP E++A + V L+ ++ +
Sbjct: 11 LNSKNFDEFI-TKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKLNTEESQ 66
Query: 206 DLAEKYGVSGFPTLKFFPKG 225
D+A +YG+ PT+ FF G
Sbjct: 67 DIAMRYGIMSLPTIMFFKNG 86
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
L NF++ + +++ +V+F+A WC C LAP E+L + + V GK++ +E +
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQ---VAFGKLNTEESQD 67
Query: 88 LCSKYGVQGYPTIQWFPKGSL 108
+ +YG+ PTI +F G L
Sbjct: 68 IAMRYGIMSLPTIMFFKNGEL 88
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
VV E F +EV LV+F+APWCG C+ ++P E+L + A + + KV+ DE
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEEL--ARDHAGRLKVVKVNVDE 92
Query: 85 HKSLCSKYGVQGYPTIQWFPKGS 107
H L ++YGV+ PT+ F +G+
Sbjct: 93 HPGLAARYGVRSVPTLVLFRRGA 115
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222
LV+F+APWCG C+ ++P E++A VV N+ D++ LA +YGV PTL F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNV--DEHPGLAARYGVRSVPTLVLF 111
Query: 223 PKG 225
+G
Sbjct: 112 RRG 114
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
+A +D + K V+V+F+A WCG CK +AP EK A ++ D LD D+ D
Sbjct: 14 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 70
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
+A+K VS PTL F+ KG K+
Sbjct: 71 VAQKAEVSSMPTLIFY-KGGKE 91
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F+A WCG CK +AP EK + A K+D DE + K V PT
Sbjct: 26 DKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPT 82
Query: 100 IQWFPKG 106
+ ++ G
Sbjct: 83 LIFYKGG 89
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
+A +D + K V+V+F+A WCG CK +AP EK A ++ D LD D+ D
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 63
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
+A+K VS PTL F+ KG K+
Sbjct: 64 VAQKAEVSSMPTLIFY-KGGKE 84
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F+A WCG CK +AP EK + A K+D DE + K V PT
Sbjct: 19 DKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPT 75
Query: 100 IQWFPKG 106
+ ++ G
Sbjct: 76 LIFYKGG 82
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD VL +LV+F+A WC K +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ +V + GA LV+F+A WC K +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KYG++G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
+ LT+ NF++ + D LV+F+A WCG C+ +AP E+ + A V + K++ DE+
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86 KSLCSKYGVQGYPTIQWFPKGSLEPKK 112
S++G+ PT+ F G EP K
Sbjct: 61 PETTSQFGIMSIPTLILFKGG--EPVK 85
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
+ LT NF + + VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
+ LT+ NF++ + D LV+F+A WCG C+ +AP E+ + A V + K++ DE+
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86 KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
S++G+ PT+ F KG K+ G + E L
Sbjct: 61 PETTSQFGIMSIPTLILF-KGGRPVKQLIGYQPKEQL 96
Score = 57.8 bits (138), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
+ LT NF + + VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 138 AVPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
+ S ++ L D E +L++ K+ V+V+F+A WCG CK +AP +++++ + D +
Sbjct: 10 VIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAI 65
Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 242
+D DK ++ A KY +S PT G K G+ G +ED +
Sbjct: 66 FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 113
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 36 EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95
E +++ +V+F+A WCG CK +AP +++L + + KVD D+ + KY +
Sbjct: 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNIS 84
Query: 96 GYPT 99
PT
Sbjct: 85 AMPT 88
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 155 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-----LAE 209
V+ KSK VLV+F + K ++++A DD++VA + Y D L+E
Sbjct: 18 VIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSE 75
Query: 210 KYGV--SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE-KCGTSR---DGKGQLTSTA 263
KY + +P F +DG D E+ V + K G + G+G
Sbjct: 76 KYKLDKESYPVFYLF----RDG-------DFENPVPYTGAVKVGAIQRWLKGQGVYLGMP 124
Query: 264 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
G + DAL EF+ ASG E ++A+ + + + ++ + + + YLK+ +D+G D
Sbjct: 125 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGED 184
Query: 323 YAKKEIDRLQRMLDKS-ISAAKADEFVLKKNILSTF 357
+ E+ R+ R+++K+ +S K +E NIL+ F
Sbjct: 185 FPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 220
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
S ++ L D E +L++ K+ V+V+F+A WCG CK +AP +++++ + D +
Sbjct: 4 SKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVK 59
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 242
+D DK ++ A KY +S PT G K G+ G +ED +
Sbjct: 60 VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 36 EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95
E +++ +V+F+A WCG CK +AP +++L + + KVD D+ + KY +
Sbjct: 20 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNIS 75
Query: 96 GYPT 99
PT
Sbjct: 76 AMPT 79
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
++ E VL+ V+V+F+APWCG CK +AP +++A ++ + V L+ D+ +A
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 66
Query: 210 KYGVSGFPTLKFFPKGNK 227
+Y + PT+ FF G +
Sbjct: 67 QYNIRSIPTVLFFKNGER 84
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102
+V+F+APWCG CK +AP ++L + + + + K++ DE + ++Y ++ PT+ +
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNTDEAPGIATQYNIRSIPTVLF 78
Query: 103 FPKG 106
F G
Sbjct: 79 FKNG 82
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V +T+ +F+ +V + LV+F+A WCG CK +AP E+L A ++ +L K+D DE
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
+ S +KY V PT+ F G +P K G + E LAE ++
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 104
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
+V +T +FD V +S LV+F+A WCG CK +AP E++AA + + D++ LD D
Sbjct: 6 IVKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
+ A KY V PTL F G
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V +T+ +F+ +V + LV+F+A WCG CK +AP E+L A ++ +L K+D DE
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
+ S +KY V PT+ F G +P K G + E LAE ++
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 103
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
+V +T +FD V +S LV+F+A WCG CK +AP E++AA + + D++ LD D
Sbjct: 5 IVKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVD 60
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
+ A KY V PTL F G
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
++ E VL+ V+V+F+APWCG CK +AP +++A ++ + V L+ D+ +A
Sbjct: 8 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 65
Query: 210 KYGVSGFPTLKFFPKGNK 227
+Y + PT+ FF G +
Sbjct: 66 QYNIRSIPTVLFFKNGER 83
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102
+V+F+APWCG CK +AP ++L + + + + K++ DE + ++Y ++ PT+ +
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNTDEAPGIATQYNIRSIPTVLF 77
Query: 103 FPKG 106
F G
Sbjct: 78 FKNG 81
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
S + +T +F VL +K VLV+F+A WCG K +AP E++A D+ VA LD
Sbjct: 9 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERA--TDLTVAKLD 66
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 246
D + A + V PTL F G G R+L D V +N
Sbjct: 67 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
+T+ +F +V ++ LV+F+A WCG K +AP E++ ++A + + K+D D +
Sbjct: 14 VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIAT--ERATDLTVAKLDVDTNP 71
Query: 87 SLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
+ V PT+ F G +P K+ G + AL
Sbjct: 72 ETARNFQVVSIPTLILFKDG--QPVKRIVGAKGKAAL 106
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
+V + FD I+ +++ V+V+F+A WCG CK +AP YE+ + +T +V +D D+
Sbjct: 12 IVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDE 67
Query: 204 YKDLAEKYGVSGFPTLKFFPKGN 226
++ EK ++ PT K + G+
Sbjct: 68 VSEVTEKENITSMPTFKVYKNGS 90
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
+V ++ F+ + Q+ +V+F+A WCG CK++AP YE+ ++ K ++ KVD DE
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEV 68
Query: 86 KSLCSKYGVQGYPTIQWFPKGS 107
+ K + PT + + GS
Sbjct: 69 SEVTEKENITSMPTFKVYKNGS 90
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V +T+ +F+ +V + LV+F+A WCG CK +AP E+L A ++ +L K+D DE
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
+ S +KY V PT+ F G +P K G + E LAE ++
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 104
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
+V +T +FD V +S LV+F+A WCG CK +AP E++AA + + D++ LD D
Sbjct: 6 IVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
+ A KY V PTL F G
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
TA FD + + K V+V+FYA WCG CK +AP EK + + D LD D+ D
Sbjct: 7 TASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 62
Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
+A+K VS PTL F G + + G
Sbjct: 63 VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 91
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
T F+ + QD+ +V+FYA WCG CK +AP EK + +A K+D DE +
Sbjct: 7 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 63
Query: 89 CSKYGVQGYPTIQWFPKG 106
K V PT+ F G
Sbjct: 64 AQKNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
TA FD + + K V+V+FYA WCG CK +AP EK + + D LD D+ D
Sbjct: 13 TASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 68
Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
+A+K VS PTL F G + + G
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
T F+ + QD+ +V+FYA WCG CK +AP EK + +A K+D DE +
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 69
Query: 89 CSKYGVQGYPTIQWFPKG 106
K V PT+ F G
Sbjct: 70 AQKNEVSAMPTLLLFKNG 87
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
+T NFDE L + VLV+F+A WC C+ +AP E++A + E ++VA LD D+
Sbjct: 7 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENP 63
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGE 230
A +Y V PT+ F KDG+
Sbjct: 64 KTAXRYRVXSIPTVILF----KDGQ 84
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
+T+ NF++ +GQ LV+F+A WC C+ +AP E++ ++ +L+ K+D DE+
Sbjct: 7 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE--GKLLVAKLDVDENPK 64
Query: 88 LCSKYGVQGYPTIQWFPKGS 107
+Y V PT+ F G
Sbjct: 65 TAXRYRVXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
+T NFDE L + VLV+F+A WC C+ +AP E++A + E ++VA LD D+
Sbjct: 6 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENP 62
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGE 230
A +Y V PT+ F KDG+
Sbjct: 63 KTAXRYRVXSIPTVILF----KDGQ 83
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
+T+ NF++ +GQ LV+F+A WC C+ +AP E++ ++ +L+ K+D DE+
Sbjct: 6 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE--GKLLVAKLDVDENPK 63
Query: 88 LCSKYGVQGYPTIQWFPKGS 107
+Y V PT+ F G
Sbjct: 64 TAXRYRVXSIPTVILFKDGQ 83
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
++ LT D+FD ++ +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
+ A KY G PTL F G
Sbjct: 62 QNPGTAPKYIERGIPTLLLFKNG 84
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+D ++ LT+D+F+ ++ + GA LV+F+A WCG CK +AP +++ ++ +V K+
Sbjct: 1 SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ D++ KY +G PT+ F G + K G S L E+++
Sbjct: 59 NIDQNPGTAPKYIERGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
D +VLTE+NF++ + ++ LV+ +A WC C P Y+K+ + K K+V G+++
Sbjct: 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY-KGKAVF-GRLNV 61
Query: 83 DEHKSLCSKYGVQGYPTIQWFPKGSL 108
DE++ + KY V PT F G L
Sbjct: 62 DENQKIADKYSVLNIPTTLIFVNGQL 87
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
+VLT +NFDE++ + +K VLV+ +A WC C P Y+KVA + + V L+ D+
Sbjct: 7 LVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLNVDE 63
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
+ +A+KY V PT F G
Sbjct: 64 NQKIADKYSVLNIPTTLIFVNG 85
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V T+ +F E + L +F+APWCG CK +AP E+L + I K+D DE
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPCKMIAPVLEELDQEM--GDKLKIVKIDVDE 59
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
++ KYGV PT+ G + G + EAL E VN
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
VL +F+APWCG CK +AP E++ + D + + +D D+ ++ A KYGV PTL
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 222 FPKGNKDGE 230
KDGE
Sbjct: 78 L----KDGE 82
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 22 ADDVVVLTEDNFEKEVGQDRGAL-VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGK 79
+D + +L D V R A VEF+A WCGHC AP + L K + L +
Sbjct: 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70
Query: 80 VDCDE--HKSLCSKYGVQGYPTIQWF 103
+DC E + ++C + + G+PT+++F
Sbjct: 71 LDCAEETNSAVCRDFNIPGFPTVRFF 96
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 131 GTNVKIAAVPSN-VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF- 188
G+++ PS+ + +L AD VL VEF+A WCGHC APT+ +A
Sbjct: 1 GSHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60
Query: 189 TLEDDVVVANLDADKYKDLA--EKYGVSGFPTLKFFPKGNKDG 229
+ +A LD + + A + + GFPT++FF +G
Sbjct: 61 AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNG 103
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 26 VVLTEDNFEKEVGQDRGAL--VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
V+ T + EK + +++G L V+F+A WCG C+ +AP+ E L K+ V KVD D
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALA---KEIPEVEFAKVDVD 59
Query: 84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119
+++ +KY V PT + G E ++ G T
Sbjct: 60 QNEEAAAKYSVTAMPTFVFIKDGK-EVDRFSGANET 94
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 144 VVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V+ TA + ++++ +K + ++V+F+A WCG C+N+AP E +A +V A +D D
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVD 59
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
+ ++ A KY V+ PT F G K+ + + G +
Sbjct: 60 QNEEAAAKYSVTAMPTFVFIKDG-KEVDRFSGANE 93
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWC--------------GHCKNLAPTYEKVAAAF 188
++ LT D+FD VL +LV+F+A WC G CK +AP +++A +
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 189 TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 225
+ + VA L+ D+ A KYG+ G PTL F G
Sbjct: 65 --QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 18/122 (14%)
Query: 21 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGH--------------CKKLAPEYEKL 65
++D ++ LT+D+F+ +V + GA LV+F+A WCG CK +AP +++
Sbjct: 1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 66 GASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 125
++ +V K++ D++ KYG++G PT+ F G + K G S L E+
Sbjct: 61 ADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEF 117
Query: 126 VN 127
++
Sbjct: 118 LD 119
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 216
D K V+++F A WCG C+ +AP + + A F + +D D+ KD+AE Y V
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM 82
Query: 217 PTLKFFPKGNKDGEEYGGGRD 237
PT F G K GG +D
Sbjct: 83 PTFLFIKDGEKVDSVVGGRKD 103
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 38 GQDRGALV--EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95
G+D G LV +F A WCG C+ +AP + + F A + KVD DE K + Y V+
Sbjct: 24 GKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA---IFLKVDVDELKDVAEAYNVE 80
Query: 96 GYPTIQWFPKG 106
PT + G
Sbjct: 81 AMPTFLFIKDG 91
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
+F + V++ V+V+F+A WCG CK L P EK+ A VV+A +D D + DLA
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAI 79
Query: 210 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250
+Y VS PT+ G+ +++ G +D + +F+ + G
Sbjct: 80 EYEVSAVPTVLAMKNGDV-VDKFVGIKDEDQLEAFLKKLIG 119
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 34 EKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYG 93
++ V + +V+F+A WCG CK L P EK+ A K+ V++ KVD D+H L +Y
Sbjct: 25 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIEYE 82
Query: 94 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
V PT+ G + K+ G + + L ++
Sbjct: 83 VSAVPTVLAMKNGDVV-DKFVGIKDEDQLEAFL 114
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
+A +D + K V+V+F+A WCG K +AP EK A ++ D LD D+ D
Sbjct: 15 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 71
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
+A+K VS PTL F+ KG K+
Sbjct: 72 VAQKAEVSSMPTLIFY-KGGKE 92
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F+A WCG K +AP EK + A K+D DE + K V PT
Sbjct: 27 DKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPT 83
Query: 100 IQWFPKG 106
+ ++ G
Sbjct: 84 LIFYKGG 90
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
V+ + D F++ G D+ +++F+A WCG CK + P +EK+ + V KVD DE
Sbjct: 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDEQ 77
Query: 86 KSLCSKYGVQGYPTIQWFPKG 106
+ + G++ PT +F G
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNG 98
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
V+ + D F + V K V+++F+A WCG CK + P +EK++ D V +D D+
Sbjct: 19 VISSYDQFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDE 76
Query: 204 YKDLAEKYGVSGFPTLKFFPKGNK 227
+A++ G+ PT FF G K
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKNGQK 100
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
+FF KG K GE G + E + INE
Sbjct: 78 QFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASESEVKSMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
+FF KG K GE G + E + INE
Sbjct: 78 QFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKSMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
+A +D + K V+V+F+A WCG K +AP EK A ++ D LD D+ D
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 63
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
+A+K VS PTL F+ KG K+
Sbjct: 64 VAQKAEVSSMPTLIFY-KGGKE 84
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F+A WCG K +AP EK + A K+D DE + K V PT
Sbjct: 19 DKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPT 75
Query: 100 IQWFPKG 106
+ ++ G
Sbjct: 76 LIFYKGG 82
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
+K V+++FYA WCG CK +AP E+++ + + DVV +D D+ +D+A+ ++ PT
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPT 76
Query: 219 LKFFPKGNKDGEEYGGGRD 237
F G K G D
Sbjct: 77 FLFMKNGQKLDSLSGANYD 95
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 30 EDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
+++F K++ + ++ +++FYA WCG CK +AP+ E+L S V+ KVD DE +
Sbjct: 8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSM---SDVVFLKVDVDECED 64
Query: 88 LCSKYGVQGYPTIQWFPKGS 107
+ + PT + G
Sbjct: 65 IAQDNQIACMPTFLFMKNGQ 84
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
+FF KG K GE G + E + INE
Sbjct: 78 QFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASEXEVKCMPT 76
Query: 100 IQWFPKGS 107
Q+F KG
Sbjct: 77 FQFFKKGQ 84
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
+FF KG K GE G + E + INE
Sbjct: 78 QFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 100 IQWFPKGS 107
Q+F KG
Sbjct: 77 FQFFKKGQ 84
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
PT +FF KG K GE G + E + INE
Sbjct: 72 KATPTFQFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V +T+ +F+ +V + LV+F+A WCG K +AP E+L A ++ +L K+D DE
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
+ S +KY V PT+ F G +P K G + E LAE ++
Sbjct: 63 NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 104
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
+V +T +FD V +S LV+F+A WCG K +AP E++AA + + D++ LD D
Sbjct: 6 IVKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
+ A KY V PTL F G
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A KYG+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVAPKYGI 71
Query: 214 SGFPTLKFFPKGNKDGEEYGG 234
G PTL F G + G
Sbjct: 72 RGIPTLLLFKNGEVAATKVGA 92
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + KYG++G PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDAQDVAPKYGIRGIPT 76
Query: 100 IQWFPKGSLEPKKYEGPRSTEALAEYVN 127
+ F G + K G S L E+++
Sbjct: 77 LLLFKNGEVAATKV-GALSKGQLKEFLD 103
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
++ E VL+ V+V+F+APWCG K +AP +++A ++ + V L+ D+ +A
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 66
Query: 210 KYGVSGFPTLKFFPKGNK 227
+Y + PT+ FF G +
Sbjct: 67 QYNIRSIPTVLFFKNGER 84
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102
+V+F+APWCG K +AP ++L + + + + K++ DE + ++Y ++ PT+ +
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEY--SGKIAVYKLNTDEAPGIATQYNIRSIPTVLF 78
Query: 103 FPKG 106
F G
Sbjct: 79 FKNG 82
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
V+ L NF+ + A+V+F+A WC C LAP E+L + + V GK++ DE
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDE 57
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEP 110
+ + ++YGV PT+ +F G EP
Sbjct: 58 NPDIAARYGVMSLPTVIFFKDG--EP 81
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V+ L + NFD L + +V+F+A WC C LAP E++A + V L++D
Sbjct: 1 VIHLDSKNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSD 56
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
+ D+A +YGV PT+ FF KDGE
Sbjct: 57 ENPDIAARYGVMSLPTVIFF----KDGE 80
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
PT +FF KG K GE G + E + INE
Sbjct: 72 KCTPTFQFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKCTPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V T+ +F E + L +F+APWCG K +AP E+L + I K+D DE
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDE 59
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
++ KYGV PT+ G + G + EAL E VN
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
VL +F+APWCG K +AP E++ + D + + +D D+ ++ A KYGV PTL
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 222 FPKGNKDGE 230
KDGE
Sbjct: 78 L----KDGE 82
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
S+++ + + V D K V+V FY+P C +CK P +E+ A + V ++
Sbjct: 6 SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRIN 63
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
AEKYGV G PT KFF G E+ G
Sbjct: 64 IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVG 96
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI 100
+ +V FY+P C +CK P +E+ + S + G+++ + KYGVQG PT
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEY--GSSAVFGRINIATNPWTAEKYGVQGTPTF 82
Query: 101 QWFPKG 106
++F G
Sbjct: 83 KFFCHG 88
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
TA FD + + K V+V+FYA WCG K +AP EK + + D LD D+ D
Sbjct: 13 TASEFDSAIA-QDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 68
Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
+A+K VS PTL F G + + G
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
T F+ + QD+ +V+FYA WCG K +AP EK + +A K+D DE +
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 69
Query: 89 CSKYGVQGYPTIQWFPKG 106
K V PT+ F G
Sbjct: 70 AQKNEVSAMPTLLLFKNG 87
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D + +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVNDCQDVASECEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRD 237
PT +FF KG K GE G ++
Sbjct: 72 KCMPTFQFFKKGQKVGEFSGANKE 95
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD ++ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVNDCQDVASECEVKCMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V T+ +F E + L +F+APWCG K +AP E+L + I K+D DE
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDE 59
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
++ KYGV PT+ G + G + EAL E VN
Sbjct: 60 NQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
VL +F+APWCG K +AP E++ + D + + +D D+ ++ A KYGV PTL
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 222 FPKGNKDGE 230
KDGE
Sbjct: 78 L----KDGE 82
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 4 YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPE 61
Y + LALGT + A+ V + +D F V D+ +++ + WCG CK +AP+
Sbjct: 2 YYLELALGTQEM---EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK 58
Query: 62 YEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSL 108
YEKL + V+ K+DC+ E+K+L + G++ PT + + S+
Sbjct: 59 YEKLAEEY---LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 125 YVNNEGGTNVKIAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEK 183
Y+ GT ++ A+ V + D F IV K V+++ + WCG CK +AP YEK
Sbjct: 3 YLELALGTQ-EMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK 61
Query: 184 VAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
+A + DV+ LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 62 LAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 113
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGK 79
+D + +L D+ V G VEF+A WCGH AP +++L K + L +
Sbjct: 11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70
Query: 80 VDCDE--HKSLCSKYGVQGYPTIQWF 103
+DC E + ++C ++ + G+PT+++F
Sbjct: 71 LDCAEETNSAVCREFNIAGFPTVRFF 96
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVVANL 199
+ +L AD+ VL S VEF+A WCGH APT++++A + ++ V +
Sbjct: 14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDC 73
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDG 229
+ + ++ ++GFPT++FF K+G
Sbjct: 74 AEETNSAVCREFNIAGFPTVRFFQAFTKNG 103
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 144 VVLTADNFDEI--VLDKSKD----VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197
VV+ N DE + K+K+ V+++F A WCG C+ +AP + + A F V
Sbjct: 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFL 71
Query: 198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
+D D+ K++AEKY V PT F G + + G +D
Sbjct: 72 KVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 29 TEDNFEKEVGQDRGA----LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+D F+ ++ + + A +++F A WCG C+ +AP + + F A + KVD DE
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA---VFLKVDVDE 77
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAA 138
K + KY V+ PT + G+ E K G R + V + G T +A
Sbjct: 78 LKEVAEKYNVEAMPTFLFIKDGA-EADKVVGARKDDLQNTIVKHVGATAASASA 130
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
+V +T+ +F+ +V + LV+F+A CG CK +AP E+L A ++ +L K+D DE
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
+ S +KY V PT+ F G +P K G + E LAE ++
Sbjct: 62 NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 103
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
+V +T +FD V +S LV+F+A CG CK +AP E++AA + + D++ LD D
Sbjct: 5 IVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVD 60
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
+ A KY V PTL F G
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFY--APWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
+++V + E N ++ + Q V FY + HC +L P E L A + ++ K+
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKL 64
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
DCD + + +++G++ PT+ F G +P ++GP+ EA+
Sbjct: 65 DCDAEQMIAAQFGLRAIPTVYLFQNG--QPVDGFQGPQPEEAI 105
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 142 NVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
N+V + N + VL++S VL F++ HC L P E +AA + ++A L
Sbjct: 8 NIVNINESNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQFILAKL 64
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGN 226
D D + +A ++G+ PT+ F G
Sbjct: 65 DCDAEQMIAAQFGLRAIPTVYLFQNGQ 91
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRD 237
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG K + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDSQDVASESEVKSMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 23 DDVVVLTEDNFEKEVGQDRGALVEFY--APWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
++V + E N ++ + Q V FY + HC +L P E L A + ++ K+
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHG--QFILAKL 64
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
DCD + + +++G++ PT+ F G +P ++GP+ EA+
Sbjct: 65 DCDAEQXIAAQFGLRAIPTVYLFQNG--QPVDGFQGPQPEEAI 105
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
N+V + N + L++S VL F++ HC L P E +AA + ++A
Sbjct: 7 QNIVNINESNLQQ-TLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQY--HGQFILAK 63
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGN 226
LD D + +A ++G+ PT+ F G
Sbjct: 64 LDCDAEQXIAAQFGLRAIPTVYLFQNGQ 91
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 32 NFEKEVGQ-----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
NFEK + D+ A+V+FYA WCG CK +AP ++L + ++I KVD ++ +
Sbjct: 25 NFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQ 82
Query: 87 SLCSKYGVQGYPTIQWFP 104
L +G++ P+I + P
Sbjct: 83 ELAGAFGIRSIPSILFIP 100
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
N +E + K +V+FYA WCG CK +AP +++A + + +V+ +D +K ++LA
Sbjct: 29 NPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEKEQELAG 86
Query: 210 KYGVSGFPTLKFFPKGNK 227
+G+ P++ F P K
Sbjct: 87 AFGIRSIPSILFIPMEGK 104
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+V+F A WCG C+ +AP + L KK +VL KVD DE KS+ S + +Q PT +
Sbjct: 42 VVDFTASWCGPCRFIAPFFADLA---KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFL 98
Query: 104 PKGSL 108
+G +
Sbjct: 99 KEGKI 103
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
V+V+F A WCG C+ +AP + +A +V+ +D D+ K +A + + PT F
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMF 97
Query: 222 FPKGNKDGEEYGGGRD 237
+G + G +D
Sbjct: 98 LKEGKILDKVVGAKKD 113
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
A+ V+ +T F+ VL + VLV F+A WCG C+ ++P AA T D + V
Sbjct: 3 TAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLIN--LAANTYSDRLKV 60
Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
L+ D +KY V G P L+ KG + + G + +SF++
Sbjct: 61 VKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLD 109
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 19 SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
+A++ V+ +T+ FE EV + ++ LV F+A WCG C+ ++P ++ V+
Sbjct: 3 TAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVV- 61
Query: 78 GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTN 133
K++ D + + KY V+G P ++ KG EG S + L +++ N
Sbjct: 62 -KLEIDPNPTTVKKYKVEGVPALR-LVKGEQILDSTEGVISKDKLLSFLDTHLNNN 115
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
LD + D V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 26 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 82
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
PT +FF KG K GE G + E + INE
Sbjct: 83 KSMPTFQFFKKGQKVGEFSGANK--EKLEATINE 114
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG K + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 31 DKLVVVDFSATWCGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKSMPT 87
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 88 FQFFKKG 94
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 136 IAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
+ A+ V + D F IV K V+++ + WCG CK +AP YEK+A + DV
Sbjct: 1 MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DV 57
Query: 195 VVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
+ LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 58 IFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 101
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 18 VSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV 75
+ A+ V + +D F V D+ +++ + WCG CK +AP+YEKL + V
Sbjct: 1 MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY---LDV 57
Query: 76 LIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSL 108
+ K+DC+ E+K+L + G++ PT + + S+
Sbjct: 58 IFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 91
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
LD + D V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
PT +FF KG K GE G + E + INE
Sbjct: 72 KATPTFQFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG K + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPAKMIKPFFHSLS---EKYSNVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+++F A WCG C+ +AP + +A F + V +D D+ K +AE++ V PT
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTF 91
Query: 220 KFFPKGNKDGEEYGGGRD 237
F +G+ G ++
Sbjct: 92 LFMKEGDVKDRVVGAIKE 109
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+++F A WCG C+ +AP + L F A + KVD DE K + ++ V+ PT +
Sbjct: 38 VIDFTASWCGPCRIMAPVFADLAKKFPNA---VFLKVDVDELKPIAEQFSVEAMPTFLFM 94
Query: 104 PKGSLE 109
+G ++
Sbjct: 95 KEGDVK 100
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
+FF KG K GE G + E + INE
Sbjct: 78 QFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG K + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKRMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
+V+ T + +K + D +++F+APWCG C+ AP + + A ++A V KV+ +
Sbjct: 39 EVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAA--ERAGKVRFVKVNTE 96
Query: 84 EHKSLCSKYGVQGYPTIQWFPKG 106
+L +++ ++ PTI + G
Sbjct: 97 AEPALSTRFRIRSIPTIXLYRNG 119
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
V+ TA+ D+++ D V ++F+APWCG C++ AP + + AA + V N +A+
Sbjct: 40 VINATAETLDKLLQDDLPXV-IDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 254
L+ ++ + PT+ + G K + G F ++++E+ SRD
Sbjct: 99 PA--LSTRFRIRSIPTIXLYRNG-KXIDXLNGAVPKAPFDNWLDEQ--LSRD 145
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC 89
+++FEK G + +V+F A WC CK +AP + +L KK +V KVD DE K++
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELA---KKFPNVTFLKVDVDELKAVA 72
Query: 90 SKYGVQGYPTIQWFPKGSL 108
++ V+ PT + G L
Sbjct: 73 EEWNVEAMPTFIFLKDGKL 91
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
K ++V+F A WC CK +AP + ++A F +V +D D+ K +AE++ V PT
Sbjct: 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 219 LKFFPKGNKDGEEYGGGRD 237
F G + G +D
Sbjct: 83 FIFLKDGKLVDKTVGADKD 101
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 153 EIVLDKSKD----VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 208
E +L++ K+ VLV+F+A WCG C+ L +A A DV +D DK + A
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAA 69
Query: 209 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242
+ YGVS P L FF K K+G E + L+ FV
Sbjct: 70 DAYGVSSIPAL-FFVK--KEGNEI---KTLDQFV 97
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
LV+F+A WCG C++L + L + + K V KVD D++ + YGV P + +
Sbjct: 27 LVDFFATWCGPCQRLG---QILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFV 83
Query: 104 PKGSLEPKKYE 114
K E K +
Sbjct: 84 KKEGNEIKTLD 94
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 22 ADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
++ + +++ +F+++V + G LV+F+A WCG CK + P ++G F A V + KV
Sbjct: 1 SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKV 58
Query: 81 DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 112
+ D++ + Y V+ PT+ G + KK
Sbjct: 59 NIDDNPETPNAYQVRSIPTLMLVRDGKVIDKK 90
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
+ + ++ +FD+ VL S VLV+F+A WCG CK + P ++ F V VA ++
Sbjct: 3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNI 60
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKG 225
D + Y V PTL G
Sbjct: 61 DDNPETPNAYQVRSIPTLMLVRDG 84
>pdb|1G7D|A Chain A, Nmr Structure Of Erp29 C-Domain
Length = 106
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 264 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
G + + DAL +F+ AS E ++A+ + + G+ ++ + + YLK+ +D+G D
Sbjct: 2 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61
Query: 323 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
+ E+ R+ ++++ +S K +E NIL+ F
Sbjct: 62 FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 138 AVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
A+ V + D F IV K V+++ + WCG K +AP YEK+A + DV+
Sbjct: 2 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIF 58
Query: 197 ANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 59 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 100
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYP 98
D+ +++ + WCG K +AP+YEKL + V+ K+DC+ E+K+L + G++ P
Sbjct: 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIFLKLDCNQENKTLAKELGIRVVP 80
Query: 99 TIQWFPKGSL 108
T + + S+
Sbjct: 81 TFKILKENSV 90
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+++F A WCG + +AP + +A F + V +D D+ K +AE++ V PT
Sbjct: 38 KLVVIDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTF 94
Query: 220 KFFPKGNKDGEEYGGGRD 237
F +G+ G ++
Sbjct: 95 LFMKEGDVKDRVVGAIKE 112
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+++F A WCG + +AP + L F A + KVD DE K + ++ V+ PT +
Sbjct: 41 VIDFTASWCGPSRIMAPVFADLAKKFPNA---VFLKVDVDELKPIAEQFSVEAMPTFLFM 97
Query: 104 PKGSLE 109
+G ++
Sbjct: 98 KEGDVK 103
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A W G K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWSGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
+FF KG K GE G + E + INE
Sbjct: 78 QFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A W G K + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWSGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
+A F+E++ K+K +LV F+APW C + ++A V L+A+
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVP 81
Query: 206 DLAEKYGVSGFPTLKFFPKGNK 227
+++EKY +S PT FF K
Sbjct: 82 EVSEKYEISSVPTFLFFKNSQK 103
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+V F+APW C ++ E + K+ V K++ + + KY + PT +F
Sbjct: 42 VVHFWAPWAPQCAQM---NEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 98
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRD 237
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
D+ +V+F A WCG CK + P + L +K +V+ +VD D+ + + S+ V+ PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDXQDVASEXEVKCMPT 76
Query: 100 IQWFPKG 106
Q+F KG
Sbjct: 77 FQFFKKG 83
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
+A F+E++ K+K +LV F+APW C + ++A V L+A+
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVP 75
Query: 206 DLAEKYGVSGFPTLKFFPKGNK 227
+++EKY +S PT FF K
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQK 97
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+V F+APW C ++ E + K+ V K++ + + KY + PT +F
Sbjct: 36 VVHFWAPWAPQCAQM---NEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92
Query: 104 PKGSLEPKKYEGPRSTE 120
K S + + +G + E
Sbjct: 93 -KNSQKIDRLDGAHAPE 108
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 155 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 214
++ ++ ++++FYA WCG CK + P K+ A+ DV D D+ D+A++ V+
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPDIAKECEVT 82
Query: 215 GFPTLKFFPKGNKDGEEYG 233
PT KDG+ G
Sbjct: 83 AMPTFVL----GKDGQLIG 97
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
LTE F + Q+ +++FYA WCG CK + P KL ++ + V K D DE
Sbjct: 20 LTE--FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFV---KCDVDESPD 74
Query: 88 LCSKYGVQGYPTIQWFPKGSL 108
+ + V PT G L
Sbjct: 75 IAKECEVTAMPTFVLGKDGQL 95
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 144 VVLTADNFDEIVLDKSKD---VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
++ T + +D+ + + S+D VL F A WCG CK +AP Y +++ + ++ +D
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYP---SLMFLVID 84
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236
D+ D + + + PT F G + + G +
Sbjct: 85 VDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
L F A WCG CK++AP Y +L ++ S++ +D DE + + ++ PT
Sbjct: 50 LANFSARWCGPCKQIAPYYIELSENY---PSLMFLVIDVDELSDFSASWEIKATPT 102
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
L+ +F V +++ F WC CK + PT+E++A+ +E D+ A +DA+ +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMAS--QMEGDIRFAYMDAEDAE 61
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
+ + P+L F G E + G + D +IN
Sbjct: 62 KTMAELNIRTLPSLALFVDGMIR-EVFSGTMNKSDLRYWIN 101
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 28 LTEDNFEKEVGQDRGALV-EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
L++ +F+ EV Q ++ F WC CKK+ P +E++ + + + +D ++ +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQME--GDIRFAYMDAEDAE 61
Query: 87 SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
++ ++ P++ F G + + + G + L ++NN
Sbjct: 62 KTMAELNIRTLPSLALFVDGMIR-EVFSGTMNKSDLRYWINN 102
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 47 FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106
F+A WC C + E +KL + K + + KVD D+++SL K+ V+ PTI
Sbjct: 49 FFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNK 106
Query: 107 SLEPKKYEGPRSTEALA 123
++ +K S + +A
Sbjct: 107 TMLARKDHFVSSNDLIA 123
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217
K+ +++ F+A WC C + +K+ + + + +D DK + LA K+ V P
Sbjct: 41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLP 98
Query: 218 TL 219
T+
Sbjct: 99 TI 100
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 152 DEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY 211
+E+ DK +VEF+A W C++ AP Y ++ + + +D +Y D++ +Y
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRY 77
Query: 212 GVSGFPTLKFFP 223
VS P K P
Sbjct: 78 KVSTSPLTKQLP 89
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
+VEF+A W C+ AP Y L + + GKVD + + ++Y V P +
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKY-NCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88
Query: 104 P 104
P
Sbjct: 89 P 89
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
A PS V V + + F I+ S+D+L F A WCG CK + EK+A F V
Sbjct: 16 ARYPSVVDVYSVEQFRNIM---SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TV 69
Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
A +DAD ++ K V PT G G G
Sbjct: 70 KFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGAN 110
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
V + + F + +D + F A WCG CK + EK+ F K KVD D +
Sbjct: 24 VYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVK---FAKVDADNNS 80
Query: 87 SLCSKYGVQGYPT 99
+ SK V PT
Sbjct: 81 EIVSKCRVLQLPT 93
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 203
T D ++ +++ K K V+++ YA WC CK T+ L D V++ AN+ A+
Sbjct: 18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 77
Query: 204 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 248
+D+A + V G PT+ FF + G+E+ R D E F + + ++
Sbjct: 78 AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 203
T D ++ +++ K K V+++ YA WC CK T+ L D V++ AN+ A+
Sbjct: 15 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 74
Query: 204 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 248
+D+A + V G PT+ FF + G+E+ R D E F + + ++
Sbjct: 75 AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 123
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 144 VVLTADNFDEIVLDKSKD---VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
++ T + +D+ + + S+D VL F A WCG + +AP Y +++ + ++ +D
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVID 84
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236
D+ D + + + PT F G + + G +
Sbjct: 85 VDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
L F A WCG +++AP Y +L ++ S++ +D DE + + ++ PT
Sbjct: 50 LANFSARWCGPSRQIAPYYIELSENY---PSLMFLVIDVDELSDFSASWEIKATPT 102
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYG 212
++ K ++V+F A WCG CK +AP +E TL +D V+ +D D +AE G
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFE------TLSNDYAGKVIFLKVDVDAVAAVAEAAG 75
Query: 213 VSGFPTLKFFPKGNKDGEEYGGGRD 237
++ PT + G K + G +D
Sbjct: 76 ITAMPTFHVYKDGVKADDLVGASQD 100
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98
+ + +V+F A WCG CK +AP +E L + A V+ KVD D ++ G+ P
Sbjct: 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 99 TIQWFPKG 106
T + G
Sbjct: 81 TFHVYKDG 88
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217
+ K VLV F+A WC +C++ P+ +++ +F D VV+A + K EKY +
Sbjct: 40 RGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA---VNVEKRFPEKYRRAPV- 95
Query: 218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 253
+ F ++ G L D +FI ++ G R
Sbjct: 96 SFNFLSDATGQVQQRYGANRLPD--TFIVDRKGIIR 129
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 15 LFFVSALADDVVVLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKKLAPEYEKLGASFKKA 72
L ALA + + T K + Q RG LV F+A WC +C+ P ++L SF K
Sbjct: 14 LVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKG 73
Query: 73 KSVLIG 78
V++
Sbjct: 74 DLVVLA 79
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYG 212
++ K ++V F A WCG CK +AP +E TL +D V+ +D D +AE G
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFE------TLSNDYAGKVIFLKVDVDAVAAVAEAAG 75
Query: 213 VSGFPTLKFFPKGNKDGEEYGGGRD 237
++ PT + G K + G +D
Sbjct: 76 ITAMPTFHVYKDGVKADDLVGASQD 100
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98
+ + +V F A WCG CK +AP +E L + A V+ KVD D ++ G+ P
Sbjct: 23 EHKPIVVAFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 99 TIQWFPKG 106
T + G
Sbjct: 81 TFHVYKDG 88
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102
A+V F+ C HCK + +K GA +A V I VD + L + G + PT+ +
Sbjct: 22 AIVFFHKNLCPHCKNMEKVLDKFGA---RAPQVAISSVDSEARPELMKELGFERVPTLVF 78
Query: 103 FPKGSLEPKKYEG---PRSTEAL 122
G + K + G PR +AL
Sbjct: 79 IRDGKV-AKVFSGIMNPRELQAL 100
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220
D +V F+ C HCKN+ +K A V ++++D++ +L ++ G PTL
Sbjct: 21 DAIVFFHKNLCPHCKNMEKVLDKFGAR---APQVAISSVDSEARPELMKELGFERVPTLV 77
Query: 221 FFPKG 225
F G
Sbjct: 78 FIRDG 82
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 141 SNVVVLTADNFDEI-VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD------ 193
S+VV L+ D+F + + +V FY CG C+ A T+ K A +E
Sbjct: 23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 246
A ++ DL KY ++ P L FF P+ + E G LE V+F N
Sbjct: 83 ATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLE-HVAFEN 135
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 21 LADDVVVLTEDNFEK--EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK--KAKSVL 76
L VV L+ D+F + V +V FY CG C++ A + K K K L
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDAL 80
Query: 77 ----IGKVDCDEHKSLCSKYGVQGYPTIQWF-PKGSLEPKKYEGPRSTEALA 123
V+C LC KY + P + +F P+ S + G S E +A
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVA 132
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 172 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 210
GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 172 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 210
GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 172 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 210
GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAEKYGVSGFPT 218
K ++ F+APWC C+ AP +VAA+ V VA LD ++ KY V F
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 99
Query: 219 L 219
L
Sbjct: 100 L 100
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-CDEHKSLCS 90
+F E + A++ F+APWC C+ AP ++ AS + V + +D + +
Sbjct: 31 DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVN 90
Query: 91 KYGVQGY 97
KY V+ +
Sbjct: 91 KYPVKTF 97
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAEKYGVSGFPT 218
K ++ F+APWC C+ AP +VAA+ V VA LD ++ KY V F
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 219 L 219
L
Sbjct: 86 L 86
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-CDEHKSLCS 90
+F E + A++ F+APWC C+ AP ++ AS + V + +D + +
Sbjct: 17 DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVN 76
Query: 91 KYGVQGY 97
KY V+ +
Sbjct: 77 KYPVKTF 83
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 203
T D ++ +++ K K V+++ YA WC K T+ L D V++ AN+ A+
Sbjct: 18 TVDELNQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTAND 77
Query: 204 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 248
+D+A + V G PT+ FF + G+E+ R D E F + + ++
Sbjct: 78 AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG-KVDCDE 84
L+ F+ Q + A++ F+ PWC C AP ++ A+ V I + D
Sbjct: 10 TTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGA 69
Query: 85 HKSLCSKYGVQ 95
+S SKY +
Sbjct: 70 MQSFVSKYNLN 80
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA 187
L+ FD L + K ++ F+ PWC C AP+ +VAAA
Sbjct: 10 TTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAA 52
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 172 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 210
GH +APT E VA TLED+V+ A +D D+ ++L E
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREH 284
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 166 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN-LDADKYKDLAEKYGVSGFPTLKFFPK 224
F CG+C P+ +A F L +D + + +DA + +DLAE++ V G P +
Sbjct: 143 FVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--- 195
Query: 225 GNKDGEEYGGGRDLEDFVSFI 245
NK E+ G + F+ +I
Sbjct: 196 -NKGVAEFVGAQPENAFLGYI 215
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 172 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 210
GH +APT E VA TLED+V+ A +D D+ ++L E
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREH 284
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 20/81 (24%)
Query: 49 APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------KSLCSKYGVQGYPTIQW 102
A WC HC+ + E GA+F + + V+C + C++ G+ YPT W
Sbjct: 21 AYWCPHCQD---QKELFGAAFDQ-----VPYVECSPNGPGTPQAQECTEAGITSYPT--W 70
Query: 103 FPKGSLEPKKYEGPRSTEALA 123
G + Y G RS EALA
Sbjct: 71 IING----RTYTGVRSLEALA 87
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 160 KDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADKYK--DLAEKYGVSGF 216
K + V+ + WCG CK L+ ++ A V +D +K + +L +KYGV +
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY 87
Query: 217 PTLKFFPKGNKDGE 230
PTL F N GE
Sbjct: 88 PTLLFI---NSSGE 98
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 39 QDRGALVEFYAPWCGHCKKLAPEYEK---LGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95
+D+ V+ + WCG CK+L+ K + F + L ++ E L KYGV
Sbjct: 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVH 85
Query: 96 GYPTIQW 102
YPT+ +
Sbjct: 86 AYPTLLF 92
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 166 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN-LDADKYKDLAEKYGVSGFPTLKFFPK 224
F CG+C P+ A F L +D + + +DA + +DLAE++ V G P +
Sbjct: 143 FVTTSCGYC----PSAAVXAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--- 195
Query: 225 GNKDGEEYGGGRDLEDFVSFI 245
NK E+ G + F+ +I
Sbjct: 196 -NKGVAEFVGAQPENAFLGYI 215
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 51 WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE------HKSLCSKYGVQGYPTIQWFP 104
WC HC+ + E GA+F + + V+C C++ G+ YPT W
Sbjct: 208 WCPHCQD---QKELFGAAFDQ-----VPYVECSPNGPGTPQAQECTEAGITSYPT--WII 257
Query: 105 KGSLEPKKYEGPRSTEALA 123
G + Y G RS EALA
Sbjct: 258 NG----RTYTGVRSLEALA 272
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDA---DKYKDLAEKYGVSGFP 217
V ++F+A WCG C+ P + A + + VV NLDA D K LA+ V
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQ---VPAEF 87
Query: 218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFV 277
T+ F PKG YG F+ R+GK L A +AL ++ +
Sbjct: 88 TVAFDPKGQTP-RLYGVKGXPTSFL--------IDRNGKVLLQHVGFRPADKEALEQQIL 138
Query: 278 AASG 281
AA G
Sbjct: 139 AALG 142
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP---TIQ 101
++F+A WCG C++ P + A + KAK + V+ D K+ Q P T+
Sbjct: 33 LDFWASWCGPCRQSFPWXNQXQAKY-KAKGFQVVAVNLDAKTGDAXKFLAQ-VPAEFTVA 90
Query: 102 WFPKGSLEPKKY 113
+ PKG P+ Y
Sbjct: 91 FDPKGQ-TPRLY 101
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 141 SNVVVLTADNFDEI-VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD------ 193
S+VV L+ D+F + + +V FY CG + A T+ K A +E
Sbjct: 23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 246
A ++ DL KY ++ P L FF P+ + E G LE V+F N
Sbjct: 83 ATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLE-HVAFEN 135
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 21 LADDVVVLTEDNFEK--EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK--KAKSVL 76
L VV L+ D+F + V +V FY CG ++ A + K K K L
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDAL 80
Query: 77 ----IGKVDCDEHKSLCSKYGVQGYPTIQWF-PKGSLEPKKYEGPRSTEALA 123
V+C LC KY + P + +F P+ S + G S E +A
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVA 132
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
K +++ F+ W CK L +E ++ + +V ++DAD+ +++E + +S P
Sbjct: 22 KLIVLYFHTSWAEPCKALKQVFEAISNEPS-NSNVSFLSIDADENSEISELFEISAVPYF 80
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFI 245
KG E G D +++VS +
Sbjct: 81 IIIHKGTILKE--LSGADPKEYVSLL 104
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
V ++ +F+ E+ R A+V+F CG C ++AP + + + +A + +VD +
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQA---VFLEVDVHQ 62
Query: 85 HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG 115
+ + + PT Q+F + + +Y+G
Sbjct: 63 CQGTAATNNISATPTFQFF-RNKVRIDQYQG 92
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
S+ +V+F CG C +AP + ++ + V +D + + A +S PT
Sbjct: 21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPT 77
Query: 219 LKFF 222
+FF
Sbjct: 78 FQFF 81
>pdb|1B9N|A Chain A, Regulator From Escherichia Coli
pdb|1B9N|B Chain B, Regulator From Escherichia Coli
Length = 265
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTAD 149
S++ +Q QWF G++ + ++ + + + +G T +K+A +TA
Sbjct: 122 SRFSLQTSARNQWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQ 168
Query: 150 NFDEIVLDKSKDVLVEFYAPWCG 172
+ + LD+ K+VL+ APW G
Sbjct: 169 SGARLGLDEGKEVLILLKAPWVG 191
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFK--KAKSVLIGKVDCDEHK----SLCSKYGV 94
+G + F+ WC HCKK E+ + +K K++ V I V+ E K + YGV
Sbjct: 27 KGVFLNFWGTWCPHCKK---EFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGV 83
Query: 95 QGYPTI 100
+P +
Sbjct: 84 N-FPVV 88
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY--KDLAEKYGVS 214
K K V + F+ WC HCK P F + ++V N+ K + + YGV+
Sbjct: 25 KGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 215 GFPTL 219
FP +
Sbjct: 85 -FPVV 88
>pdb|1O7L|A Chain A, Molybdate-Activated Form Of Mode From Escherichia Coli
pdb|1O7L|B Chain B, Molybdate-Activated Form Of Mode From Escherichia Coli
pdb|1O7L|C Chain C, Molybdate-Activated Form Of Mode From Escherichia Coli
pdb|1O7L|D Chain D, Molybdate-Activated Form Of Mode From Escherichia Coli
Length = 262
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTAD 149
S++ +Q QWF G++ + ++ + + + +G T +K+A +TA
Sbjct: 119 SRFSLQTSARNQWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQ 165
Query: 150 NFDEIVLDKSKDVLVEFYAPWCG 172
+ + LD+ K+VL+ APW G
Sbjct: 166 SGARLGLDEGKEVLILLKAPWVG 188
>pdb|1B9M|A Chain A, Regulator From Escherichia Coli
pdb|1B9M|B Chain B, Regulator From Escherichia Coli
Length = 265
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTAD 149
S++ +Q QWF G++ + ++ + + + +G T +K+A +TA
Sbjct: 122 SRFSLQTSARNQWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQ 168
Query: 150 NFDEIVLDKSKDVLVEFYAPWCG 172
+ + LD+ K+VL+ APW G
Sbjct: 169 SGARLGLDEGKEVLILLKAPWVG 191
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFK--KAKSVLIGKVDCDEHK----SLCSKYGV 94
+G + F+ WC HCKK E+ + +K K++ V I V+ E K + YGV
Sbjct: 24 KGVFLNFWGTWCEHCKK---EFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGV 80
Query: 95 QGYPTI 100
+P +
Sbjct: 81 N-FPVV 85
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY--KDLAEKYGVS 214
K K V + F+ WC HCK P F + ++V N+ K + + YGV+
Sbjct: 22 KGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 81
Query: 215 GFPTL 219
FP +
Sbjct: 82 -FPVV 85
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 139 VPSNVVVL-TADNFD-EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDV 194
VP + L TADN + L K K L++F+A WC C + EK A A F+ + +
Sbjct: 2 VPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLI 61
Query: 195 VVAN---LDADKYKDLAEKYGVSGFPTL 219
VA+ L K D + Y +P L
Sbjct: 62 TVASPGFLHEKKDGDFQKWYAGLNYPKL 89
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 139 VPSNVVVL-TADNFD-EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDV 194
VP + L TADN + L K K L++F+A WC C + EK A A F+ + +
Sbjct: 1 VPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLI 60
Query: 195 VVAN---LDADKYKDLAEKYGVSGFPTL 219
VA+ L K D + Y +P L
Sbjct: 61 TVASPGFLHEKKDGDFQKWYAGLNYPKL 88
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 18 VSALADDVVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKKLAPEYEK 64
+ +A D + D + + RG +V +F A WCG C+K P EK
Sbjct: 9 IGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEK 57
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEK 183
+ K V+++F A WCG C+ P EK
Sbjct: 32 RGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217
++ ++++F A WC C + ++ + V + ++D D + L +++ + P
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY----VTLVDIDVDIHPKLNDQHNIKALP 94
Query: 218 TLKFFPKGNKD 228
T +F+ N +
Sbjct: 95 TFEFYFNLNNE 105
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98
Q+ +++F A WC C K+ EY K ++ V + +D D H L ++ ++ P
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIK-EYFKNQLNY---YYVTLVDIDVDIHPKLNDQHNIKALP 94
Query: 99 TIQWF 103
T +++
Sbjct: 95 TFEFY 99
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 135 KIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYE 182
K AVP+ + T + D + +K + ++ F+ WC CK P ++
Sbjct: 10 KQPAVPAVFLXKTIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQ 57
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
++V + WCG CK L P + + L + V+ NL
Sbjct: 42 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 79
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
++V + WCG CK L P + + L + V+ NL
Sbjct: 49 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 86
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 147 TADNFD-EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDVVVAN 198
TADN + L K K L++F+A WC C + EK A A F+ + + VA+
Sbjct: 25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVAS 79
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAA 187
K + V+V F+A WC C+ P+ ++ AA
Sbjct: 27 KGQVVIVNFWATWCPPCREEIPSXXRLNAA 56
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 167 YAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 226
+ +C K L ++ + E + + D + K+LAEKY + P G
Sbjct: 34 HCQYCDQLKQLVQELSELTDKLSYE----IVDFDTPEGKELAEKYRIDRAPATTITQDGK 89
Query: 227 KDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFV 277
G Y G +F +F+ + S+ + + V+ +D V+ +
Sbjct: 90 DFGVRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILI 140
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 25/114 (21%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF---------------------TLEDDVVV 196
K K VLV+F+ C C+ P K AF +E+D
Sbjct: 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSY 87
Query: 197 AN---LDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 246
N L D KD+ E Y + GFP + P+G +E G F+N
Sbjct: 88 WNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 141
>pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1224
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCK 175
E L EY++ E ++ IA P ++ A+ +++ +D +K + V +A HC+
Sbjct: 687 EGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCE 742
>pdb|1H9R|A Chain A, Tungstate Bound Complex Dimop Domain Of Mode From E.Coli
pdb|1H9R|B Chain B, Tungstate Bound Complex Dimop Domain Of Mode From E.Coli
pdb|1H9S|A Chain A, Molybdate Bound Complex Of Dimop Domain Of Mode From
E.Coli
Length = 140
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSK 160
QWF G++ + ++ + + + +G T +K+A +TA + + LD+ K
Sbjct: 8 QWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQSGARLGLDEGK 54
Query: 161 DVLVEFYAPWCG 172
+VL+ APW G
Sbjct: 55 EVLILLKAPWVG 66
>pdb|1H9S|B Chain B, Molybdate Bound Complex Of Dimop Domain Of Mode From
E.Coli
Length = 140
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSK 160
QWF G++ + ++ + + + +G T +K+A +TA + + LD+ K
Sbjct: 8 QWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQSGARLGLDEGK 54
Query: 161 DVLVEFYAPWCG 172
+VL+ APW G
Sbjct: 55 EVLILLKAPWVG 66
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 60 PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK------- 112
P Y+ A+ +A + I +D K + +K G TI W K L+PK+
Sbjct: 105 PYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTA---TIDWI-KAHLKPKEIRQFPNI 160
Query: 113 ------YEGPRSTEALAE------YVNNEGGTNVKIAAVP 140
E R A+ + +VNNEG VK+A P
Sbjct: 161 DQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP 200
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG 78
+V +A WCG C+K P K + KK +G
Sbjct: 28 IVNLWATWCGPCRKEXPAXSKWYKAQKKGSVDXVG 62
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 190 LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE-- 247
LE DVV + LDAD D+ + + +G + + + Y +D+ V +N
Sbjct: 92 LECDVVFSGLDADVAGDIEKSFVEAGLAVV-------SNAKNYRREKDVPLVVPIVNPEH 144
Query: 248 --------KCGTSRDGKG-------QLTSTAGIVASLDALVKEF 276
K S+ GK STAG+VA L LV++F
Sbjct: 145 IDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEKF 188
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
K K + ++ +A WCG C+ P +++ + + D+ +L DK K
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNK 75
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
D +K + + FY +CG +L + VAA + +VVV +L
Sbjct: 134 DNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDL 176
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV--------- 75
++ +T + F + + D A++ Y+ C HC + P+ + +K V
Sbjct: 18 LIYITPEEFRQLLQGD--AILAVYSKTCPHCHRDWPQL------IQASKEVDVPIVMFIW 69
Query: 76 --LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 108
LIG+ + + +K GV+G PT+ ++ +G +
Sbjct: 70 GSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRI 104
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 30/98 (30%)
Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------DAD----- 202
K K V ++F+A WC C P +++A DD VV + +AD
Sbjct: 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAG--DDYVVLTVVSPGHKGEQSEADFKNWY 78
Query: 203 ---KYKDLA----------EKYGVSGFPTLKFFPKGNK 227
YK+L E YGV +PT F K K
Sbjct: 79 KGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGK 116
>pdb|2L57|A Chain A, Solution Structure Of An Uncharacterized Thioredoin-Like
Protein From Clostridium Perfringens
Length = 126
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222
++ F C +C + V+ + ++ A L+ +K DLA KY + PT F
Sbjct: 30 IIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFL 89
Query: 223 PK-GNK 227
K GNK
Sbjct: 90 DKEGNK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,206,269
Number of Sequences: 62578
Number of extensions: 508056
Number of successful extensions: 2221
Number of sequences better than 100.0: 200
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1534
Number of HSP's gapped (non-prelim): 385
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)