Query 018270
Match_columns 358
No_of_seqs 321 out of 2893
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 3.1E-42 6.7E-47 314.6 19.4 227 21-250 23-474 (493)
2 PTZ00102 disulphide isomerase; 100.0 2E-35 4.4E-40 283.2 27.3 227 23-251 32-467 (477)
3 KOG0191 Thioredoxin/protein di 100.0 3.5E-32 7.6E-37 252.0 22.2 225 24-252 30-255 (383)
4 TIGR01130 ER_PDI_fam protein d 100.0 1.8E-30 4E-35 248.1 24.0 226 24-251 2-456 (462)
5 TIGR02187 GlrX_arch Glutaredox 100.0 1.8E-28 3.9E-33 209.2 18.2 200 31-247 11-214 (215)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4.1E-23 9E-28 156.2 11.1 105 19-126 5-113 (113)
7 PF07749 ERp29: Endoplasmic re 99.9 4.5E-23 9.7E-28 150.1 9.4 95 264-358 1-95 (95)
8 KOG4277 Uncharacterized conser 99.9 1.1E-21 2.3E-26 165.2 15.3 221 1-248 1-230 (468)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3E-22 6.6E-27 151.5 10.7 103 140-245 8-113 (113)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 7.4E-22 1.6E-26 148.1 12.2 100 24-126 2-101 (101)
11 cd02996 PDI_a_ERp44 PDIa famil 99.9 7.3E-22 1.6E-26 150.0 11.8 104 23-126 1-108 (108)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1E-21 2.2E-26 148.3 11.0 102 142-245 2-104 (104)
13 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.1E-21 2.4E-26 149.1 10.9 103 142-245 2-108 (108)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.5E-21 3.3E-26 147.3 11.5 101 24-126 2-104 (104)
15 KOG0190 Protein disulfide isom 99.9 2.6E-22 5.5E-27 184.2 7.8 158 139-298 23-181 (493)
16 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.1E-21 6.7E-26 144.7 11.2 99 142-244 2-100 (101)
17 cd00238 ERp29c ERp29 and ERp38 99.9 2E-21 4.3E-26 140.0 9.5 91 267-357 2-93 (93)
18 KOG0910 Thioredoxin-like prote 99.9 2E-21 4.3E-26 149.4 9.9 106 142-250 44-149 (150)
19 cd03065 PDI_b_Calsequestrin_N 99.9 8.2E-21 1.8E-25 144.5 12.1 106 141-248 9-118 (120)
20 PF00085 Thioredoxin: Thioredo 99.8 1.6E-20 3.5E-25 141.4 12.0 103 143-248 1-103 (103)
21 PTZ00443 Thioredoxin domain-co 99.8 1.5E-20 3.2E-25 158.8 13.0 107 22-131 29-140 (224)
22 PF00085 Thioredoxin: Thioredo 99.8 1E-20 2.3E-25 142.5 10.4 102 25-129 1-103 (103)
23 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.5E-20 3.3E-25 141.1 10.6 100 24-129 2-115 (116)
24 KOG0191 Thioredoxin/protein di 99.8 1.5E-20 3.2E-25 174.4 12.9 204 22-226 142-355 (383)
25 KOG0912 Thiol-disulfide isomer 99.8 4.3E-20 9.3E-25 155.8 14.0 206 28-253 1-212 (375)
26 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.8E-20 3.9E-25 140.7 9.9 100 142-248 2-115 (116)
27 cd03002 PDI_a_MPD1_like PDI fa 99.8 4.6E-20 9.9E-25 140.5 11.7 101 25-127 2-109 (109)
28 cd03002 PDI_a_MPD1_like PDI fa 99.8 4E-20 8.7E-25 140.8 11.3 101 143-245 2-108 (109)
29 cd02994 PDI_a_TMX PDIa family, 99.8 6E-20 1.3E-24 137.8 11.8 100 24-128 2-101 (101)
30 cd02994 PDI_a_TMX PDIa family, 99.8 5.8E-20 1.2E-24 137.9 11.5 100 142-247 2-101 (101)
31 cd02993 PDI_a_APS_reductase PD 99.8 5.4E-20 1.2E-24 139.8 10.8 103 142-245 2-109 (109)
32 cd02993 PDI_a_APS_reductase PD 99.8 1.3E-19 2.7E-24 137.8 11.8 102 24-126 2-109 (109)
33 KOG0910 Thioredoxin-like prote 99.8 3.7E-20 8E-25 142.4 8.8 105 23-130 43-148 (150)
34 cd03001 PDI_a_P5 PDIa family, 99.8 1.6E-19 3.4E-24 136.0 12.1 101 24-126 1-102 (103)
35 cd03001 PDI_a_P5 PDIa family, 99.8 1.5E-19 3.2E-24 136.2 11.4 101 143-245 2-102 (103)
36 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.6E-19 3.5E-24 135.7 11.1 100 25-126 2-102 (102)
37 cd03065 PDI_b_Calsequestrin_N 99.8 1E-19 2.2E-24 138.5 9.5 107 21-129 7-118 (120)
38 cd02998 PDI_a_ERp38 PDIa famil 99.8 2E-19 4.3E-24 136.0 10.9 103 143-245 2-105 (105)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2E-19 4.2E-24 135.8 10.7 102 143-245 2-104 (104)
40 PTZ00443 Thioredoxin domain-co 99.8 1.4E-18 3.1E-23 146.8 17.0 110 140-252 29-142 (224)
41 TIGR01126 pdi_dom protein disu 99.8 3E-19 6.6E-24 134.2 11.5 101 28-129 1-101 (102)
42 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.8E-19 6.1E-24 134.4 10.4 100 143-245 2-102 (102)
43 COG3118 Thioredoxin domain-con 99.8 2.9E-19 6.3E-24 152.1 11.2 108 22-132 22-132 (304)
44 TIGR01126 pdi_dom protein disu 99.8 4.5E-19 9.8E-24 133.2 11.2 101 146-248 1-101 (102)
45 COG3118 Thioredoxin domain-con 99.8 1.5E-18 3.3E-23 147.7 14.9 108 141-251 23-132 (304)
46 cd02999 PDI_a_ERp44_like PDIa 99.8 3.8E-19 8.2E-24 132.5 9.8 89 33-126 9-100 (100)
47 cd02998 PDI_a_ERp38 PDIa famil 99.8 7.4E-19 1.6E-23 132.8 11.5 102 25-126 2-105 (105)
48 cd02997 PDI_a_PDIR PDIa family 99.8 6.3E-19 1.4E-23 133.0 11.1 102 24-126 1-104 (104)
49 cd02999 PDI_a_ERp44_like PDIa 99.8 4E-19 8.8E-24 132.3 9.5 84 157-245 16-100 (100)
50 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 8.4E-19 1.8E-23 132.3 11.4 101 25-126 2-104 (104)
51 cd02963 TRX_DnaJ TRX domain, D 99.8 5.1E-19 1.1E-23 134.7 9.9 101 26-128 7-110 (111)
52 PRK09381 trxA thioredoxin; Pro 99.8 1.5E-18 3.3E-23 132.0 12.5 107 140-249 2-108 (109)
53 cd02963 TRX_DnaJ TRX domain, D 99.8 9E-19 1.9E-23 133.3 10.2 100 146-247 9-110 (111)
54 cd02956 ybbN ybbN protein fami 99.8 1.3E-18 2.8E-23 129.3 10.4 93 32-127 2-96 (96)
55 PRK09381 trxA thioredoxin; Pro 99.8 1.8E-18 3.9E-23 131.6 11.3 106 22-130 2-108 (109)
56 PHA02278 thioredoxin-like prot 99.8 1.1E-18 2.4E-23 129.8 9.4 94 29-125 3-100 (103)
57 cd02997 PDI_a_PDIR PDIa family 99.8 2.1E-18 4.6E-23 130.1 10.8 101 143-245 2-104 (104)
58 cd02956 ybbN ybbN protein fami 99.8 3E-18 6.4E-23 127.3 11.3 94 149-245 1-95 (96)
59 PHA02278 thioredoxin-like prot 99.8 2.5E-18 5.5E-23 127.9 10.2 93 148-244 4-100 (103)
60 cd02954 DIM1 Dim1 family; Dim1 99.8 1.4E-18 3.1E-23 130.0 8.7 85 148-235 2-87 (114)
61 cd02961 PDI_a_family Protein D 99.8 3.5E-18 7.6E-23 127.8 10.9 100 27-126 2-101 (101)
62 PRK10996 thioredoxin 2; Provis 99.8 3.1E-18 6.7E-23 135.5 11.0 105 22-129 34-138 (139)
63 PTZ00062 glutaredoxin; Provisi 99.8 1.6E-17 3.4E-22 138.1 14.5 161 29-221 5-174 (204)
64 KOG1731 FAD-dependent sulfhydr 99.8 6.8E-17 1.5E-21 148.1 19.9 300 22-336 38-365 (606)
65 cd02954 DIM1 Dim1 family; Dim1 99.8 1.8E-18 3.9E-23 129.4 7.7 86 30-118 2-89 (114)
66 cd02962 TMX2 TMX2 family; comp 99.8 6E-18 1.3E-22 134.5 11.2 92 22-115 27-126 (152)
67 PRK10996 thioredoxin 2; Provis 99.8 1.3E-17 2.7E-22 132.1 12.3 105 140-248 34-138 (139)
68 cd03000 PDI_a_TMX3 PDIa family 99.8 8.1E-18 1.8E-22 126.7 10.6 96 149-248 7-103 (104)
69 cd02985 TRX_CDSP32 TRX family, 99.8 1.1E-17 2.5E-22 125.5 10.9 95 147-246 2-100 (103)
70 cd02948 TRX_NDPK TRX domain, T 99.7 1.1E-17 2.5E-22 125.3 10.6 98 27-128 4-101 (102)
71 cd02965 HyaE HyaE family; HyaE 99.7 2.4E-17 5.2E-22 122.5 11.9 96 143-242 12-109 (111)
72 cd02961 PDI_a_family Protein D 99.7 9E-18 2E-22 125.6 9.7 100 145-245 2-101 (101)
73 cd03000 PDI_a_TMX3 PDIa family 99.7 1.5E-17 3.2E-22 125.3 10.8 95 31-128 7-102 (104)
74 cd02953 DsbDgamma DsbD gamma f 99.7 2.2E-17 4.9E-22 124.4 10.6 95 31-127 2-104 (104)
75 cd02948 TRX_NDPK TRX domain, T 99.7 3.1E-17 6.8E-22 122.9 11.1 97 146-247 5-101 (102)
76 cd02992 PDI_a_QSOX PDIa family 99.7 2.8E-17 6.1E-22 125.5 11.0 100 142-241 2-108 (114)
77 cd02985 TRX_CDSP32 TRX family, 99.7 2E-17 4.3E-22 124.2 9.9 95 29-128 2-101 (103)
78 TIGR00424 APS_reduc 5'-adenyly 99.7 2.4E-17 5.3E-22 152.8 12.2 108 139-247 349-461 (463)
79 PLN02309 5'-adenylylsulfate re 99.7 3.2E-17 6.9E-22 152.0 12.4 109 139-248 343-456 (457)
80 cd02992 PDI_a_QSOX PDIa family 99.7 8.2E-17 1.8E-21 122.9 12.6 102 24-125 2-111 (114)
81 KOG0912 Thiol-disulfide isomer 99.7 4.2E-18 9.1E-23 143.9 4.8 106 146-252 1-109 (375)
82 cd02962 TMX2 TMX2 family; comp 99.7 7.1E-17 1.5E-21 128.4 11.3 94 139-234 26-126 (152)
83 cd02965 HyaE HyaE family; HyaE 99.7 3.7E-17 8.1E-22 121.4 9.0 99 22-123 9-109 (111)
84 TIGR01130 ER_PDI_fam protein d 99.7 1.9E-17 4.1E-22 158.4 9.3 111 142-253 2-113 (462)
85 TIGR00424 APS_reduc 5'-adenyly 99.7 6.4E-17 1.4E-21 150.0 12.4 106 22-128 350-461 (463)
86 PLN02309 5'-adenylylsulfate re 99.7 6.7E-17 1.5E-21 149.8 12.2 107 22-129 344-456 (457)
87 TIGR01068 thioredoxin thioredo 99.7 9.4E-17 2E-21 120.2 10.8 99 28-129 1-100 (101)
88 TIGR01068 thioredoxin thioredo 99.7 1.3E-16 2.9E-21 119.4 11.4 100 146-248 1-100 (101)
89 KOG4277 Uncharacterized conser 99.7 1.4E-17 3E-22 140.5 6.4 94 158-253 42-136 (468)
90 PLN00410 U5 snRNP protein, DIM 99.7 1.2E-16 2.7E-21 124.3 10.7 102 147-250 10-121 (142)
91 cd02950 TxlA TRX-like protein 99.7 2E-16 4.2E-21 125.6 12.1 102 148-252 10-113 (142)
92 cd02957 Phd_like Phosducin (Ph 99.7 1.4E-16 3.1E-21 121.7 10.5 89 141-234 4-94 (113)
93 KOG0907 Thioredoxin [Posttrans 99.7 1.2E-16 2.6E-21 118.9 9.5 86 157-247 19-104 (106)
94 cd02953 DsbDgamma DsbD gamma f 99.7 1.5E-16 3.2E-21 119.9 9.7 94 149-245 2-103 (104)
95 PTZ00102 disulphide isomerase; 99.7 1.8E-16 3.8E-21 152.3 12.4 112 140-254 31-143 (477)
96 PLN00410 U5 snRNP protein, DIM 99.7 2.5E-16 5.4E-21 122.6 10.4 99 29-129 10-119 (142)
97 cd02950 TxlA TRX-like protein 99.7 2.6E-16 5.6E-21 124.9 10.6 100 30-131 10-111 (142)
98 cd02989 Phd_like_TxnDC9 Phosdu 99.7 5.2E-16 1.1E-20 118.1 11.5 87 142-233 5-92 (113)
99 cd02986 DLP Dim1 family, Dim1- 99.7 2.9E-16 6.2E-21 116.5 9.3 82 149-232 3-85 (114)
100 cd02989 Phd_like_TxnDC9 Phosdu 99.7 2.3E-16 5.1E-21 120.1 9.0 87 24-114 5-92 (113)
101 cd02957 Phd_like Phosducin (Ph 99.7 1.4E-16 3.1E-21 121.7 7.8 88 23-115 4-94 (113)
102 KOG0907 Thioredoxin [Posttrans 99.7 4E-16 8.6E-21 116.1 8.5 86 38-128 19-104 (106)
103 cd02984 TRX_PICOT TRX domain, 99.7 7.5E-16 1.6E-20 114.5 9.5 94 29-126 1-96 (97)
104 cd02984 TRX_PICOT TRX domain, 99.7 1E-15 2.2E-20 113.8 10.0 94 148-245 2-96 (97)
105 cd02949 TRX_NTR TRX domain, no 99.6 1.9E-15 4.1E-20 112.2 10.6 93 151-246 5-97 (97)
106 cd02975 PfPDO_like_N Pyrococcu 99.6 2.4E-15 5.2E-20 114.6 11.0 96 151-250 15-111 (113)
107 cd02949 TRX_NTR TRX domain, no 99.6 1.8E-15 4E-20 112.3 9.5 87 38-127 11-97 (97)
108 PTZ00051 thioredoxin; Provisio 99.6 1.8E-15 3.8E-20 112.7 9.4 90 29-123 7-96 (98)
109 cd02987 Phd_like_Phd Phosducin 99.6 4.2E-15 9.2E-20 121.8 11.6 104 139-247 60-173 (175)
110 cd02986 DLP Dim1 family, Dim1- 99.6 3.6E-15 7.9E-20 110.6 8.8 82 30-113 2-85 (114)
111 KOG0908 Thioredoxin-like prote 99.6 4.8E-15 1.1E-19 122.2 9.9 107 147-258 8-115 (288)
112 cd02951 SoxW SoxW family; SoxW 99.6 6E-15 1.3E-19 115.0 9.9 98 31-130 4-119 (125)
113 cd02975 PfPDO_like_N Pyrococcu 99.6 4.8E-15 1E-19 112.9 9.0 97 31-130 13-110 (113)
114 cd02947 TRX_family TRX family; 99.6 7.1E-15 1.5E-19 107.8 9.2 93 31-127 1-93 (93)
115 PTZ00051 thioredoxin; Provisio 99.6 1.1E-14 2.4E-19 108.4 10.1 90 147-242 7-96 (98)
116 PF01216 Calsequestrin: Calseq 99.6 3.9E-13 8.5E-18 116.5 20.4 209 22-251 33-249 (383)
117 cd02987 Phd_like_Phd Phosducin 99.6 1.1E-14 2.3E-19 119.4 10.2 102 22-128 61-173 (175)
118 PF13848 Thioredoxin_6: Thiore 99.6 2.7E-13 5.8E-18 113.2 19.0 173 57-247 7-184 (184)
119 cd02951 SoxW SoxW family; SoxW 99.6 1.8E-14 3.9E-19 112.3 10.1 97 151-250 6-120 (125)
120 TIGR01295 PedC_BrcD bacterioci 99.6 3.2E-14 7E-19 109.6 9.9 100 23-127 6-121 (122)
121 cd02947 TRX_family TRX family; 99.5 5.8E-14 1.3E-18 102.9 10.4 91 150-245 2-92 (93)
122 TIGR01295 PedC_BrcD bacterioci 99.5 7.8E-14 1.7E-18 107.4 10.4 98 143-246 8-121 (122)
123 cd02988 Phd_like_VIAF Phosduci 99.5 7.9E-14 1.7E-18 115.8 10.6 102 139-247 80-190 (192)
124 KOG0908 Thioredoxin-like prote 99.5 7.5E-14 1.6E-18 115.2 8.7 101 29-134 8-110 (288)
125 cd02982 PDI_b'_family Protein 99.5 1.6E-13 3.5E-18 103.1 9.8 88 159-248 12-102 (103)
126 cd02982 PDI_b'_family Protein 99.5 3.1E-13 6.7E-18 101.6 10.2 89 39-129 11-102 (103)
127 cd02988 Phd_like_VIAF Phosduci 99.5 2E-13 4.4E-18 113.3 9.6 100 22-128 81-190 (192)
128 TIGR00411 redox_disulf_1 small 99.5 7.3E-13 1.6E-17 95.0 9.9 80 162-248 2-81 (82)
129 TIGR02187 GlrX_arch Glutaredox 99.4 5.3E-13 1.2E-17 113.9 10.5 93 158-251 18-113 (215)
130 cd02952 TRP14_like Human TRX-r 99.4 6.3E-13 1.4E-17 100.9 9.4 77 29-107 8-101 (119)
131 TIGR00411 redox_disulf_1 small 99.4 1.4E-12 3E-17 93.6 8.9 80 43-129 2-81 (82)
132 PTZ00062 glutaredoxin; Provisi 99.4 1.6E-12 3.5E-17 108.2 10.4 92 147-251 5-96 (204)
133 cd02952 TRP14_like Human TRX-r 99.4 8.7E-13 1.9E-17 100.1 8.0 78 147-226 8-101 (119)
134 cd02959 ERp19 Endoplasmic reti 99.4 5.3E-13 1.2E-17 102.1 6.9 96 31-128 10-111 (117)
135 TIGR03143 AhpF_homolog putativ 99.4 1.3E-11 2.7E-16 120.3 18.1 186 41-245 367-554 (555)
136 cd02959 ERp19 Endoplasmic reti 99.4 6.9E-13 1.5E-17 101.5 7.0 93 157-250 17-114 (117)
137 PRK03147 thiol-disulfide oxido 99.4 6.3E-12 1.4E-16 103.8 12.5 104 25-129 46-171 (173)
138 PRK14018 trifunctional thiored 99.4 4.4E-12 9.5E-17 119.5 12.1 90 38-128 54-171 (521)
139 cd02955 SSP411 TRX domain, SSP 99.4 3.3E-12 7.1E-17 98.1 9.1 80 29-110 4-94 (124)
140 TIGR02738 TrbB type-F conjugat 99.3 2E-11 4.3E-16 97.5 12.3 89 36-128 46-151 (153)
141 KOG1731 FAD-dependent sulfhydr 99.3 1.2E-12 2.6E-17 120.5 5.7 109 139-247 37-151 (606)
142 PF13098 Thioredoxin_2: Thiore 99.3 4.4E-12 9.5E-17 96.8 7.3 87 38-126 3-112 (112)
143 PRK00293 dipZ thiol:disulfide 99.3 1.1E-11 2.4E-16 120.1 11.6 102 25-129 454-569 (571)
144 PRK15412 thiol:disulfide inter 99.3 5.2E-11 1.1E-15 99.2 12.2 88 38-130 66-176 (185)
145 PHA02125 thioredoxin-like prot 99.3 1.7E-11 3.7E-16 86.0 7.9 70 163-244 2-72 (75)
146 PF07912 ERp29_N: ERp29, N-ter 99.3 1.4E-10 3E-15 86.0 12.8 106 142-250 5-120 (126)
147 PF13098 Thioredoxin_2: Thiore 99.3 9.4E-12 2E-16 94.9 6.8 87 157-245 3-112 (112)
148 PRK00293 dipZ thiol:disulfide 99.3 2.6E-11 5.6E-16 117.6 10.9 99 147-248 459-569 (571)
149 TIGR02740 TraF-like TraF-like 99.2 6E-11 1.3E-15 104.2 11.3 91 158-250 165-265 (271)
150 TIGR02738 TrbB type-F conjugat 99.2 5.8E-11 1.3E-15 94.9 9.9 89 158-248 49-152 (153)
151 cd02955 SSP411 TRX domain, SSP 99.2 6.6E-11 1.4E-15 90.9 9.1 80 148-230 5-95 (124)
152 PRK14018 trifunctional thiored 99.2 6.3E-11 1.4E-15 111.8 10.6 89 157-246 54-170 (521)
153 TIGR00412 redox_disulf_2 small 99.2 5.2E-11 1.1E-15 83.7 7.6 72 164-245 3-75 (76)
154 PHA02125 thioredoxin-like prot 99.2 5.8E-11 1.2E-15 83.3 7.4 70 44-125 2-72 (75)
155 cd03008 TryX_like_RdCVF Trypar 99.2 7.1E-11 1.5E-15 93.2 8.3 70 158-227 24-124 (146)
156 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 7.2E-11 1.6E-15 91.6 8.4 93 27-124 7-120 (123)
157 cd03010 TlpA_like_DsbE TlpA-li 99.2 8.4E-11 1.8E-15 91.8 8.1 80 39-122 24-126 (127)
158 TIGR00412 redox_disulf_2 small 99.2 9E-11 2E-15 82.5 7.4 73 44-126 2-75 (76)
159 TIGR02740 TraF-like TraF-like 99.2 8.5E-11 1.8E-15 103.2 8.8 91 39-131 165-265 (271)
160 PRK03147 thiol-disulfide oxido 99.2 4.5E-10 9.7E-15 92.7 12.3 103 143-247 46-170 (173)
161 cd03009 TryX_like_TryX_NRX Try 99.2 1.5E-10 3.3E-15 90.9 8.9 70 158-227 17-111 (131)
162 PF13905 Thioredoxin_8: Thiore 99.2 1.7E-10 3.6E-15 85.2 8.7 69 159-227 1-94 (95)
163 PF13905 Thioredoxin_8: Thiore 99.2 1.6E-10 3.4E-15 85.3 8.4 69 40-108 1-94 (95)
164 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 2.4E-10 5.3E-15 88.7 9.6 93 145-243 7-120 (123)
165 PRK15412 thiol:disulfide inter 99.1 2.5E-10 5.3E-15 95.1 9.9 87 158-249 67-176 (185)
166 cd03009 TryX_like_TryX_NRX Try 99.1 2.2E-10 4.7E-15 90.0 8.9 71 39-109 17-112 (131)
167 cd02973 TRX_GRX_like Thioredox 99.1 1.5E-10 3.1E-15 79.5 6.9 57 162-221 2-58 (67)
168 cd03008 TryX_like_RdCVF Trypar 99.1 2.1E-10 4.6E-15 90.5 8.4 71 39-109 24-125 (146)
169 TIGR00385 dsbE periplasmic pro 99.1 2.1E-10 4.5E-15 94.6 8.6 88 38-130 61-171 (173)
170 cd03010 TlpA_like_DsbE TlpA-li 99.1 2.6E-10 5.7E-15 89.0 8.8 80 158-241 24-126 (127)
171 cd02964 TryX_like_family Trypa 99.1 2.1E-10 4.7E-15 90.1 8.3 70 158-227 16-111 (132)
172 cd02958 UAS UAS family; UAS is 99.1 5.3E-10 1.2E-14 85.4 9.9 92 36-129 13-110 (114)
173 TIGR00385 dsbE periplasmic pro 99.1 3.2E-10 7E-15 93.4 9.0 89 157-250 61-172 (173)
174 cd02966 TlpA_like_family TlpA- 99.1 2.6E-10 5.6E-15 86.9 7.8 76 39-115 18-116 (116)
175 PRK11509 hydrogenase-1 operon 99.1 2.3E-09 5E-14 82.3 12.6 106 145-253 21-128 (132)
176 cd02964 TryX_like_family Trypa 99.1 3.6E-10 7.9E-15 88.8 8.5 71 39-109 16-112 (132)
177 cd02973 TRX_GRX_like Thioredox 99.1 2.6E-10 5.7E-15 78.2 6.6 57 43-102 2-58 (67)
178 PRK15317 alkyl hydroperoxide r 99.1 8.3E-09 1.8E-13 99.9 18.7 183 39-250 17-199 (517)
179 COG4232 Thiol:disulfide interc 99.1 6.6E-10 1.4E-14 104.0 10.5 103 26-129 457-567 (569)
180 PRK13728 conjugal transfer pro 99.1 1.3E-09 2.8E-14 88.6 10.7 84 44-131 73-172 (181)
181 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 9.6E-10 2.1E-14 79.5 8.7 76 159-242 12-87 (89)
182 COG2143 Thioredoxin-related pr 99.1 3.6E-09 7.8E-14 81.4 11.5 126 1-128 1-147 (182)
183 cd02966 TlpA_like_family TlpA- 99.1 9.2E-10 2E-14 83.8 8.6 76 158-234 18-116 (116)
184 cd02960 AGR Anterior Gradient 99.1 1.1E-09 2.3E-14 84.1 8.7 82 33-117 16-100 (130)
185 PLN02919 haloacid dehalogenase 99.0 1.9E-09 4.2E-14 111.6 12.3 92 158-250 419-537 (1057)
186 smart00594 UAS UAS domain. 99.0 3.3E-09 7.1E-14 82.0 10.2 89 37-127 24-122 (122)
187 KOG0914 Thioredoxin-like prote 99.0 8.4E-10 1.8E-14 89.6 7.0 88 21-109 122-218 (265)
188 PRK13728 conjugal transfer pro 99.0 3.4E-09 7.5E-14 86.2 9.7 85 163-251 73-173 (181)
189 KOG0913 Thiol-disulfide isomer 99.0 1.9E-10 4.2E-15 94.6 2.2 109 141-255 24-132 (248)
190 PF13899 Thioredoxin_7: Thiore 99.0 1.6E-09 3.4E-14 77.5 6.6 71 32-105 9-82 (82)
191 PRK11509 hydrogenase-1 operon 99.0 5.3E-09 1.2E-13 80.3 9.2 107 24-132 18-126 (132)
192 TIGR03140 AhpF alkyl hydropero 99.0 6.5E-08 1.4E-12 93.6 19.1 182 40-249 18-199 (515)
193 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 4.2E-09 9E-14 76.2 7.8 76 40-123 12-87 (89)
194 TIGR01626 ytfJ_HI0045 conserve 98.9 6.7E-09 1.5E-13 85.0 9.8 84 38-126 57-176 (184)
195 cd02958 UAS UAS family; UAS is 98.9 1.2E-08 2.6E-13 77.9 10.6 91 157-249 15-111 (114)
196 cd02967 mauD Methylamine utili 98.9 4E-09 8.8E-14 80.6 8.1 59 158-218 20-81 (114)
197 cd03012 TlpA_like_DipZ_like Tl 98.9 5.2E-09 1.1E-13 81.5 8.0 76 39-115 22-124 (126)
198 cd03012 TlpA_like_DipZ_like Tl 98.9 8.6E-09 1.9E-13 80.3 8.9 77 158-235 22-125 (126)
199 PLN02919 haloacid dehalogenase 98.9 4.7E-09 1E-13 108.8 9.5 90 39-129 419-535 (1057)
200 KOG0913 Thiol-disulfide isomer 98.9 6.6E-10 1.4E-14 91.5 1.7 103 22-129 23-125 (248)
201 COG4232 Thiol:disulfide interc 98.9 5.7E-09 1.2E-13 97.8 7.4 103 145-248 458-567 (569)
202 PF01216 Calsequestrin: Calseq 98.9 4.9E-09 1.1E-13 91.4 6.4 152 141-300 34-193 (383)
203 cd02967 mauD Methylamine utili 98.8 6.2E-09 1.3E-13 79.5 6.1 60 39-100 20-82 (114)
204 PF08534 Redoxin: Redoxin; In 98.8 2.4E-08 5.1E-13 79.9 9.2 79 158-237 27-136 (146)
205 PTZ00056 glutathione peroxidas 98.8 3.1E-08 6.8E-13 83.2 9.7 59 158-218 38-107 (199)
206 cd02960 AGR Anterior Gradient 98.8 1.9E-08 4.1E-13 77.3 6.9 82 150-234 11-98 (130)
207 PF07912 ERp29_N: ERp29, N-ter 98.8 1.7E-07 3.7E-12 69.7 11.7 109 23-133 4-122 (126)
208 TIGR01626 ytfJ_HI0045 conserve 98.8 3.8E-08 8.2E-13 80.6 8.9 88 158-245 58-176 (184)
209 PF08534 Redoxin: Redoxin; In 98.8 3.5E-08 7.6E-13 78.9 8.1 80 38-118 26-136 (146)
210 PLN02399 phospholipid hydroper 98.7 8.9E-08 1.9E-12 81.9 10.7 91 158-249 98-234 (236)
211 PLN02399 phospholipid hydroper 98.7 4.9E-08 1.1E-12 83.5 9.0 91 39-130 98-234 (236)
212 smart00594 UAS UAS domain. 98.7 1.1E-07 2.3E-12 73.5 10.0 87 157-245 25-121 (122)
213 PTZ00056 glutathione peroxidas 98.7 4.4E-08 9.6E-13 82.3 7.8 91 39-130 38-178 (199)
214 PF13899 Thioredoxin_7: Thiore 98.7 2.8E-08 6.1E-13 71.0 5.6 66 156-224 14-82 (82)
215 KOG0914 Thioredoxin-like prote 98.7 2.2E-08 4.9E-13 81.4 5.3 88 139-227 122-217 (265)
216 TIGR02661 MauD methylamine deh 98.7 1.1E-07 2.4E-12 79.4 9.2 86 39-128 73-177 (189)
217 PLN02412 probable glutathione 98.7 2.1E-07 4.7E-12 76.0 10.4 43 158-201 28-70 (167)
218 KOG0911 Glutaredoxin-related p 98.7 2.1E-07 4.5E-12 76.7 9.7 178 30-225 9-202 (227)
219 cd02969 PRX_like1 Peroxiredoxi 98.6 5.4E-07 1.2E-11 74.1 11.8 96 158-254 24-157 (171)
220 TIGR02540 gpx7 putative glutat 98.6 2.1E-07 4.6E-12 75.0 9.1 43 39-82 21-63 (153)
221 TIGR02661 MauD methylamine deh 98.6 2.7E-07 5.8E-12 77.1 9.9 86 158-247 73-177 (189)
222 KOG2603 Oligosaccharyltransfer 98.6 8.7E-07 1.9E-11 76.5 11.7 116 21-136 38-172 (331)
223 TIGR02540 gpx7 putative glutat 98.6 6.5E-07 1.4E-11 72.2 10.3 43 158-201 21-63 (153)
224 KOG2501 Thioredoxin, nucleored 98.6 1.3E-07 2.7E-12 74.2 5.7 70 158-227 32-127 (157)
225 cd00340 GSH_Peroxidase Glutath 98.6 3.6E-07 7.9E-12 73.6 8.7 42 158-201 21-62 (152)
226 PLN02412 probable glutathione 98.6 3.8E-07 8.2E-12 74.6 8.8 44 39-83 28-71 (167)
227 cd00340 GSH_Peroxidase Glutath 98.5 2.6E-07 5.7E-12 74.4 7.6 43 39-83 21-63 (152)
228 COG0526 TrxA Thiol-disulfide i 98.5 4.1E-07 8.8E-12 69.2 8.4 82 40-124 32-118 (127)
229 COG0526 TrxA Thiol-disulfide i 98.5 4.2E-07 9.2E-12 69.1 8.2 67 159-227 32-101 (127)
230 TIGR02196 GlrX_YruB Glutaredox 98.5 4.5E-07 9.8E-12 63.0 7.4 69 163-246 2-74 (74)
231 cd02969 PRX_like1 Peroxiredoxi 98.5 7E-07 1.5E-11 73.4 9.6 92 39-131 24-153 (171)
232 KOG2501 Thioredoxin, nucleored 98.5 2.7E-07 5.8E-12 72.3 5.2 71 39-109 32-128 (157)
233 PF13728 TraF: F plasmid trans 98.4 1.1E-06 2.3E-11 74.6 8.5 85 39-125 119-213 (215)
234 TIGR02196 GlrX_YruB Glutaredox 98.4 1.5E-06 3.3E-11 60.3 7.7 69 44-127 2-74 (74)
235 cd01659 TRX_superfamily Thiore 98.4 1E-06 2.2E-11 59.0 6.5 60 44-106 1-63 (69)
236 PTZ00256 glutathione peroxidas 98.4 2.4E-06 5.3E-11 70.9 9.7 43 158-201 39-82 (183)
237 PF13848 Thioredoxin_6: Thiore 98.4 5.3E-06 1.1E-10 68.9 11.1 107 19-127 73-183 (184)
238 cd03017 PRX_BCP Peroxiredoxin 98.4 1.8E-06 3.9E-11 68.4 7.8 85 39-124 22-137 (140)
239 PF02114 Phosducin: Phosducin; 98.3 2.6E-06 5.7E-11 74.2 9.2 104 23-131 125-239 (265)
240 PF03190 Thioredox_DsbH: Prote 98.3 2.3E-06 5.1E-11 68.2 7.5 86 22-109 19-115 (163)
241 PF03190 Thioredox_DsbH: Prote 98.3 6.1E-06 1.3E-10 65.8 9.7 95 123-227 9-114 (163)
242 cd03017 PRX_BCP Peroxiredoxin 98.3 4.3E-06 9.4E-11 66.2 9.0 85 158-243 22-137 (140)
243 PF13728 TraF: F plasmid trans 98.3 4.7E-06 1E-10 70.7 9.5 84 158-243 119-212 (215)
244 cd02991 UAS_ETEA UAS family, E 98.3 3.6E-06 7.8E-11 64.0 7.7 89 38-129 15-112 (116)
245 PF13192 Thioredoxin_3: Thiore 98.3 4.7E-06 1E-10 58.4 7.7 73 45-127 3-76 (76)
246 TIGR02200 GlrX_actino Glutared 98.3 3.5E-06 7.6E-11 59.1 7.0 69 163-245 2-75 (77)
247 COG2143 Thioredoxin-related pr 98.3 8.8E-06 1.9E-10 63.0 9.4 89 156-246 39-146 (182)
248 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 5E-06 1.1E-10 64.2 8.3 69 158-227 24-120 (124)
249 cd03015 PRX_Typ2cys Peroxiredo 98.3 8.9E-06 1.9E-10 67.0 10.2 90 158-248 28-156 (173)
250 cd01659 TRX_superfamily Thiore 98.3 2.8E-06 6E-11 56.8 6.1 60 163-225 1-63 (69)
251 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 3.4E-06 7.4E-11 65.2 7.3 69 39-108 24-120 (124)
252 PTZ00256 glutathione peroxidas 98.2 5.4E-06 1.2E-10 68.8 8.1 44 39-83 39-83 (183)
253 TIGR02739 TraF type-F conjugat 98.2 7.1E-06 1.5E-10 70.9 8.9 88 40-129 150-247 (256)
254 PF13192 Thioredoxin_3: Thiore 98.2 9.2E-06 2E-10 56.9 7.8 71 166-246 5-76 (76)
255 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 2E-05 4.4E-10 59.5 10.1 103 143-250 1-109 (111)
256 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 1.8E-05 4E-10 59.7 9.9 102 25-130 1-108 (111)
257 cd02981 PDI_b_family Protein D 98.2 2.2E-05 4.8E-10 57.8 10.2 90 30-128 7-96 (97)
258 PRK00522 tpx lipid hydroperoxi 98.2 1.5E-05 3.2E-10 65.2 10.1 42 158-202 43-85 (167)
259 cd03015 PRX_Typ2cys Peroxiredo 98.2 8.5E-06 1.8E-10 67.1 8.4 90 39-129 28-156 (173)
260 PF02114 Phosducin: Phosducin; 98.2 9.1E-06 2E-10 70.9 8.5 104 140-248 124-237 (265)
261 cd02981 PDI_b_family Protein D 98.2 2.9E-05 6.3E-10 57.2 10.1 89 149-247 8-96 (97)
262 TIGR02200 GlrX_actino Glutared 98.2 1E-05 2.2E-10 56.8 7.2 70 44-127 2-76 (77)
263 cd02983 P5_C P5 family, C-term 98.2 4.5E-05 9.7E-10 59.3 11.4 107 142-252 3-118 (130)
264 cd02970 PRX_like2 Peroxiredoxi 98.1 1.2E-05 2.6E-10 64.3 8.4 47 40-87 23-70 (149)
265 KOG1672 ATP binding protein [P 98.1 3.8E-06 8.3E-11 67.5 5.2 82 24-108 67-149 (211)
266 cd02991 UAS_ETEA UAS family, E 98.1 2.8E-05 6.2E-10 59.1 9.7 89 156-249 14-113 (116)
267 TIGR03137 AhpC peroxiredoxin. 98.1 1.3E-05 2.7E-10 66.9 8.4 89 39-128 30-154 (187)
268 TIGR03137 AhpC peroxiredoxin. 98.1 2.5E-05 5.4E-10 65.1 10.1 89 158-247 30-154 (187)
269 cd02970 PRX_like2 Peroxiredoxi 98.1 1.9E-05 4.1E-10 63.1 9.0 47 158-205 22-69 (149)
270 KOG2603 Oligosaccharyltransfer 98.1 2.7E-05 5.8E-10 67.5 10.1 115 139-253 38-170 (331)
271 PRK00522 tpx lipid hydroperoxi 98.1 1.9E-05 4.2E-10 64.5 8.9 43 39-84 43-86 (167)
272 PF14595 Thioredoxin_9: Thiore 98.1 8.6E-06 1.9E-10 63.2 6.2 85 146-233 28-115 (129)
273 PRK13703 conjugal pilus assemb 98.1 1.9E-05 4.1E-10 67.8 8.8 87 40-128 143-239 (248)
274 PRK09437 bcp thioredoxin-depen 98.0 3.5E-05 7.6E-10 62.1 9.4 45 158-203 29-74 (154)
275 cd02968 SCO SCO (an acronym fo 98.0 1.3E-05 2.9E-10 63.5 6.7 45 39-83 21-68 (142)
276 TIGR02180 GRX_euk Glutaredoxin 98.0 9E-06 1.9E-10 58.1 5.1 54 163-220 1-59 (84)
277 PF06110 DUF953: Eukaryotic pr 98.0 4.1E-05 8.8E-10 58.0 8.6 74 31-106 6-99 (119)
278 PRK09437 bcp thioredoxin-depen 98.0 3E-05 6.5E-10 62.5 8.4 45 39-84 29-74 (154)
279 KOG3425 Uncharacterized conser 98.0 3.4E-05 7.3E-10 57.0 7.4 73 31-105 13-104 (128)
280 TIGR02180 GRX_euk Glutaredoxin 98.0 1.4E-05 2.9E-10 57.2 5.4 55 44-102 1-60 (84)
281 PRK13190 putative peroxiredoxi 98.0 7.3E-05 1.6E-09 63.1 10.1 91 158-249 26-154 (202)
282 PRK10606 btuE putative glutath 98.0 5.1E-05 1.1E-09 62.6 8.8 43 39-83 24-66 (183)
283 TIGR02739 TraF type-F conjugat 98.0 7.6E-05 1.6E-09 64.5 10.1 90 158-249 149-248 (256)
284 cd03018 PRX_AhpE_like Peroxire 98.0 4.6E-05 1E-09 60.9 8.4 45 39-84 27-72 (149)
285 cd02968 SCO SCO (an acronym fo 98.0 2.9E-05 6.2E-10 61.6 7.1 45 158-202 21-68 (142)
286 PRK10382 alkyl hydroperoxide r 97.9 7.1E-05 1.5E-09 62.1 9.1 90 39-129 30-155 (187)
287 PRK10382 alkyl hydroperoxide r 97.9 0.00013 2.9E-09 60.5 10.6 90 158-248 30-155 (187)
288 PF14595 Thioredoxin_9: Thiore 97.9 3.7E-05 8E-10 59.6 6.7 71 40-113 41-114 (129)
289 cd03014 PRX_Atyp2cys Peroxired 97.9 8.9E-05 1.9E-09 58.9 8.9 42 158-202 25-67 (143)
290 cd02983 P5_C P5 family, C-term 97.9 0.0004 8.7E-09 54.0 12.3 108 23-134 2-119 (130)
291 PRK15000 peroxidase; Provision 97.9 0.00012 2.7E-09 61.5 10.0 89 158-247 33-160 (200)
292 cd03014 PRX_Atyp2cys Peroxired 97.9 4.5E-05 9.8E-10 60.6 7.0 43 39-84 25-68 (143)
293 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 0.00019 4E-09 54.2 9.7 99 145-248 3-110 (111)
294 PRK11200 grxA glutaredoxin 1; 97.9 0.00012 2.6E-09 52.5 8.2 77 162-250 2-84 (85)
295 PRK13190 putative peroxiredoxi 97.9 7.3E-05 1.6E-09 63.1 8.2 90 39-129 26-153 (202)
296 KOG1672 ATP binding protein [P 97.9 8.7E-05 1.9E-09 59.9 8.0 81 143-227 68-149 (211)
297 KOG3414 Component of the U4/U6 97.8 0.00011 2.3E-09 54.8 7.8 76 30-107 11-88 (142)
298 cd03018 PRX_AhpE_like Peroxire 97.8 0.00013 2.7E-09 58.4 9.1 43 159-202 28-71 (149)
299 cd02971 PRX_family Peroxiredox 97.8 0.00011 2.4E-09 58.0 8.3 44 158-202 21-65 (140)
300 cd02971 PRX_family Peroxiredox 97.8 9.4E-05 2E-09 58.4 7.7 45 39-84 21-66 (140)
301 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00023 5.1E-09 53.7 9.3 100 26-129 2-110 (111)
302 TIGR03143 AhpF_homolog putativ 97.8 0.00016 3.6E-09 70.8 10.5 93 26-126 461-554 (555)
303 cd03067 PDI_b_PDIR_N PDIb fami 97.8 0.00036 7.7E-09 50.0 8.9 96 29-128 8-110 (112)
304 PRK15000 peroxidase; Provision 97.7 0.00015 3.2E-09 61.0 8.4 89 39-128 33-160 (200)
305 PRK15317 alkyl hydroperoxide r 97.7 0.00028 6.1E-09 68.6 11.5 98 26-131 101-199 (517)
306 PRK13703 conjugal pilus assemb 97.7 0.00025 5.5E-09 61.0 9.5 89 158-248 142-240 (248)
307 PRK10877 protein disulfide iso 97.7 0.00014 3E-09 62.7 7.6 83 39-129 106-230 (232)
308 cd02976 NrdH NrdH-redoxin (Nrd 97.7 0.00016 3.4E-09 49.8 6.3 67 163-244 2-72 (73)
309 PRK10606 btuE putative glutath 97.7 0.00011 2.4E-09 60.7 6.0 81 158-250 24-116 (183)
310 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00027 5.8E-09 48.6 7.0 67 44-125 2-72 (73)
311 KOG0911 Glutaredoxin-related p 97.6 5.5E-05 1.2E-09 62.6 3.9 75 157-235 15-89 (227)
312 cd03016 PRX_1cys Peroxiredoxin 97.6 0.00029 6.2E-09 59.6 8.3 86 42-128 28-152 (203)
313 PRK11200 grxA glutaredoxin 1; 97.6 0.00019 4.1E-09 51.4 6.0 76 43-130 2-83 (85)
314 cd03016 PRX_1cys Peroxiredoxin 97.6 0.00056 1.2E-08 57.8 9.8 87 161-248 28-153 (203)
315 PRK10877 protein disulfide iso 97.6 0.00035 7.5E-09 60.2 8.6 83 158-248 106-230 (232)
316 PRK13189 peroxiredoxin; Provis 97.6 0.00071 1.5E-08 57.9 10.2 90 158-248 34-162 (222)
317 PTZ00137 2-Cys peroxiredoxin; 97.6 0.00046 1E-08 60.1 8.9 90 39-129 97-224 (261)
318 PRK13599 putative peroxiredoxi 97.5 0.00087 1.9E-08 57.0 10.0 90 158-248 27-155 (215)
319 PTZ00137 2-Cys peroxiredoxin; 97.5 0.00095 2.1E-08 58.2 10.3 90 158-248 97-224 (261)
320 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00022 4.7E-09 60.0 6.3 77 39-126 76-197 (197)
321 PF06110 DUF953: Eukaryotic pr 97.5 0.00023 5E-09 53.9 5.7 67 157-225 17-99 (119)
322 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00041 8.9E-09 58.3 7.7 83 158-245 76-197 (197)
323 PRK13191 putative peroxiredoxi 97.5 0.0011 2.3E-08 56.5 9.9 90 158-248 32-160 (215)
324 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00081 1.8E-08 48.2 7.8 76 163-250 2-83 (86)
325 PF02966 DIM1: Mitosis protein 97.4 0.0014 3E-08 49.8 9.0 71 30-103 8-81 (133)
326 PF13462 Thioredoxin_4: Thiore 97.4 0.0022 4.7E-08 51.9 10.5 85 157-247 10-162 (162)
327 TIGR03140 AhpF alkyl hydropero 97.4 0.0015 3.3E-08 63.5 11.2 96 26-129 102-198 (515)
328 PRK13189 peroxiredoxin; Provis 97.4 0.00087 1.9E-08 57.3 8.2 89 39-128 34-161 (222)
329 PF11009 DUF2847: Protein of u 97.3 0.001 2.2E-08 49.0 7.0 92 29-122 6-104 (105)
330 cd03419 GRX_GRXh_1_2_like Glut 97.3 0.00041 8.9E-09 49.1 4.9 51 163-219 2-57 (82)
331 PF07449 HyaE: Hydrogenase-1 e 97.3 0.00049 1.1E-08 50.9 5.4 93 23-118 9-103 (107)
332 cd03066 PDI_b_Calsequestrin_mi 97.3 0.0037 8E-08 46.4 10.2 95 144-248 3-100 (102)
333 PF00462 Glutaredoxin: Glutare 97.3 0.0013 2.7E-08 43.6 6.8 51 44-102 1-55 (60)
334 PRK13599 putative peroxiredoxi 97.3 0.0013 2.8E-08 56.0 8.5 88 40-128 28-154 (215)
335 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0018 3.9E-08 51.8 9.1 31 158-188 4-34 (154)
336 PF07449 HyaE: Hydrogenase-1 e 97.3 0.0039 8.5E-08 46.2 9.8 80 143-226 11-93 (107)
337 PF00462 Glutaredoxin: Glutare 97.3 0.00082 1.8E-08 44.5 5.8 51 163-221 1-55 (60)
338 PF05768 DUF836: Glutaredoxin- 97.3 0.00072 1.6E-08 47.9 5.7 79 163-246 2-81 (81)
339 cd03069 PDI_b_ERp57 PDIb famil 97.2 0.0035 7.6E-08 46.7 9.3 91 147-248 7-103 (104)
340 PTZ00253 tryparedoxin peroxida 97.2 0.003 6.5E-08 53.2 10.0 90 158-248 35-163 (199)
341 PF05768 DUF836: Glutaredoxin- 97.2 0.0011 2.4E-08 46.9 6.2 80 43-127 1-81 (81)
342 TIGR02183 GRXA Glutaredoxin, G 97.2 0.00077 1.7E-08 48.4 5.4 76 44-131 2-83 (86)
343 KOG3425 Uncharacterized conser 97.2 0.0012 2.7E-08 48.9 6.3 65 158-224 24-104 (128)
344 PF13462 Thioredoxin_4: Thiore 97.2 0.0046 1E-07 50.0 10.5 44 39-82 11-54 (162)
345 PRK11657 dsbG disulfide isomer 97.2 0.0022 4.9E-08 55.9 9.1 83 40-127 117-249 (251)
346 PRK13191 putative peroxiredoxi 97.2 0.0018 3.8E-08 55.2 8.2 90 39-129 32-160 (215)
347 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0011 2.3E-08 47.0 5.5 52 44-101 2-58 (82)
348 PTZ00253 tryparedoxin peroxida 97.1 0.0025 5.4E-08 53.7 8.4 89 39-128 35-162 (199)
349 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0023 5E-08 45.9 6.7 96 147-247 8-110 (112)
350 KOG3414 Component of the U4/U6 97.1 0.0044 9.5E-08 46.4 8.4 82 149-232 12-94 (142)
351 cd03066 PDI_b_Calsequestrin_mi 97.1 0.012 2.7E-07 43.6 11.0 95 26-129 3-100 (102)
352 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.009 1.9E-07 44.5 10.0 91 29-129 7-103 (104)
353 TIGR02190 GlrX-dom Glutaredoxi 97.0 0.0015 3.3E-08 46.0 5.1 55 158-220 5-62 (79)
354 KOG2640 Thioredoxin [Function 97.0 0.00048 1E-08 60.0 2.9 128 38-187 74-202 (319)
355 cd02066 GRX_family Glutaredoxi 96.9 0.0019 4.2E-08 44.0 4.9 50 163-220 2-55 (72)
356 PRK10954 periplasmic protein d 96.9 0.0034 7.3E-08 53.2 7.0 41 40-82 37-80 (207)
357 PRK11657 dsbG disulfide isomer 96.8 0.0084 1.8E-07 52.3 9.3 84 158-246 116-249 (251)
358 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0023 5E-08 44.1 4.7 66 164-243 2-70 (72)
359 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0038 8.2E-08 43.0 5.6 66 45-124 2-70 (72)
360 cd02066 GRX_family Glutaredoxi 96.8 0.0038 8.3E-08 42.5 5.6 51 44-102 2-56 (72)
361 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.005 1.1E-07 43.3 6.0 55 40-102 6-63 (79)
362 TIGR02181 GRX_bact Glutaredoxi 96.8 0.0024 5.2E-08 44.9 4.3 49 163-219 1-53 (79)
363 PRK10329 glutaredoxin-like pro 96.7 0.013 2.9E-07 41.3 7.6 71 163-248 3-76 (81)
364 PHA03050 glutaredoxin; Provisi 96.6 0.0064 1.4E-07 45.5 6.0 63 33-102 6-75 (108)
365 cd02972 DsbA_family DsbA famil 96.6 0.0072 1.6E-07 43.8 6.1 59 44-104 1-91 (98)
366 PHA03050 glutaredoxin; Provisi 96.6 0.005 1.1E-07 46.1 5.1 55 162-219 14-73 (108)
367 cd03418 GRX_GRXb_1_3_like Glut 96.6 0.006 1.3E-07 42.2 5.3 50 163-220 2-56 (75)
368 cd03027 GRX_DEP Glutaredoxin ( 96.5 0.007 1.5E-07 41.8 5.4 49 163-219 3-55 (73)
369 cd02972 DsbA_family DsbA famil 96.5 0.0065 1.4E-07 44.0 5.3 59 163-223 1-91 (98)
370 TIGR02189 GlrX-like_plant Glut 96.5 0.0043 9.4E-08 45.7 4.3 57 161-225 8-69 (99)
371 TIGR02189 GlrX-like_plant Glut 96.5 0.0096 2.1E-07 43.9 6.1 57 35-101 3-66 (99)
372 cd03027 GRX_DEP Glutaredoxin ( 96.5 0.011 2.4E-07 40.7 6.2 51 44-102 3-57 (73)
373 PF11009 DUF2847: Protein of u 96.5 0.02 4.4E-07 42.2 7.6 93 147-241 6-104 (105)
374 TIGR02181 GRX_bact Glutaredoxi 96.4 0.008 1.7E-07 42.1 5.1 51 44-102 1-55 (79)
375 cd03418 GRX_GRXb_1_3_like Glut 96.3 0.015 3.3E-07 40.2 6.2 51 44-102 2-57 (75)
376 PRK10329 glutaredoxin-like pro 96.3 0.016 3.5E-07 40.9 6.3 71 44-129 3-76 (81)
377 KOG3171 Conserved phosducin-li 96.3 0.014 3E-07 48.1 6.6 104 23-131 138-252 (273)
378 PF02966 DIM1: Mitosis protein 96.3 0.079 1.7E-06 40.4 10.1 82 148-232 8-91 (133)
379 cd03029 GRX_hybridPRX5 Glutare 96.1 0.014 3.1E-07 40.1 5.0 66 163-245 3-71 (72)
380 KOG3170 Conserved phosducin-li 96.0 0.06 1.3E-06 44.0 8.8 102 23-130 91-201 (240)
381 TIGR00365 monothiol glutaredox 96.0 0.032 6.9E-07 40.9 6.6 44 169-220 25-72 (97)
382 cd03023 DsbA_Com1_like DsbA fa 95.9 0.018 3.8E-07 45.9 5.6 39 39-80 4-42 (154)
383 KOG3171 Conserved phosducin-li 95.8 0.026 5.6E-07 46.5 6.0 104 141-248 138-250 (273)
384 cd03029 GRX_hybridPRX5 Glutare 95.8 0.036 7.8E-07 38.0 6.1 66 44-126 3-71 (72)
385 cd03019 DsbA_DsbA DsbA family, 95.8 0.055 1.2E-06 44.4 8.2 32 158-189 14-45 (178)
386 COG0695 GrxC Glutaredoxin and 95.7 0.031 6.6E-07 39.4 5.4 51 44-102 3-59 (80)
387 COG0695 GrxC Glutaredoxin and 95.7 0.025 5.3E-07 39.8 4.8 51 163-221 3-59 (80)
388 KOG2640 Thioredoxin [Function 95.6 0.0075 1.6E-07 52.7 2.3 88 158-250 75-163 (319)
389 TIGR00365 monothiol glutaredox 95.6 0.065 1.4E-06 39.3 6.9 62 32-102 4-73 (97)
390 PRK10638 glutaredoxin 3; Provi 95.6 0.03 6.6E-07 39.7 5.0 51 163-221 4-58 (83)
391 COG1331 Highly conserved prote 95.5 0.17 3.7E-06 49.4 11.3 86 139-227 24-120 (667)
392 PF00837 T4_deiodinase: Iodoth 95.5 0.15 3.2E-06 43.4 9.5 52 21-72 80-134 (237)
393 PF13743 Thioredoxin_5: Thiore 95.4 0.033 7.2E-07 45.8 5.4 27 165-191 2-28 (176)
394 PRK10954 periplasmic protein d 95.4 0.11 2.4E-06 44.0 8.7 31 159-189 37-70 (207)
395 cd03068 PDI_b_ERp72 PDIb famil 95.4 0.21 4.5E-06 37.3 9.1 92 147-247 7-106 (107)
396 cd03028 GRX_PICOT_like Glutare 95.3 0.07 1.5E-06 38.5 6.2 59 35-102 3-69 (90)
397 PRK10638 glutaredoxin 3; Provi 95.3 0.061 1.3E-06 38.1 5.8 51 44-102 4-58 (83)
398 cd03074 PDI_b'_Calsequestrin_C 95.1 0.59 1.3E-05 34.3 10.2 104 145-248 5-119 (120)
399 cd03028 GRX_PICOT_like Glutare 95.0 0.03 6.5E-07 40.4 3.4 43 169-219 21-67 (90)
400 cd03068 PDI_b_ERp72 PDIb famil 94.8 0.43 9.3E-06 35.6 9.4 91 29-128 7-106 (107)
401 cd03019 DsbA_DsbA DsbA family, 94.6 0.062 1.3E-06 44.0 4.9 41 39-81 14-54 (178)
402 PRK10824 glutaredoxin-4; Provi 94.3 0.11 2.5E-06 39.1 5.2 62 32-102 7-76 (115)
403 KOG3170 Conserved phosducin-li 94.0 0.5 1.1E-05 38.8 8.7 102 140-247 90-199 (240)
404 PRK10824 glutaredoxin-4; Provi 93.8 0.12 2.5E-06 39.1 4.4 45 169-221 28-76 (115)
405 COG1331 Highly conserved prote 93.7 0.18 4E-06 49.2 6.6 85 22-108 25-120 (667)
406 PF13743 Thioredoxin_5: Thiore 93.6 0.079 1.7E-06 43.6 3.6 26 46-71 2-27 (176)
407 PF00837 T4_deiodinase: Iodoth 93.6 0.8 1.7E-05 39.1 9.5 61 138-199 79-142 (237)
408 KOG1752 Glutaredoxin and relat 93.3 0.32 6.9E-06 36.0 6.0 55 161-221 14-73 (104)
409 COG1225 Bcp Peroxiredoxin [Pos 92.8 2.1 4.5E-05 34.3 10.3 44 158-202 29-73 (157)
410 cd03013 PRX5_like Peroxiredoxi 92.8 0.31 6.8E-06 39.1 5.8 59 40-98 29-93 (155)
411 PRK12759 bifunctional gluaredo 92.5 0.2 4.4E-06 47.1 5.0 51 163-221 4-66 (410)
412 COG1225 Bcp Peroxiredoxin [Pos 92.4 0.97 2.1E-05 36.1 8.0 43 39-82 29-72 (157)
413 PRK12759 bifunctional gluaredo 91.9 0.36 7.8E-06 45.4 6.0 51 44-102 4-66 (410)
414 cd02978 KaiB_like KaiB-like fa 91.7 0.76 1.7E-05 31.3 5.7 63 43-106 3-65 (72)
415 cd02974 AhpF_NTD_N Alkyl hydro 91.7 1.9 4.1E-05 31.3 8.2 74 40-128 18-92 (94)
416 cd03013 PRX5_like Peroxiredoxi 91.6 0.75 1.6E-05 36.9 6.7 53 160-213 31-88 (155)
417 KOG1752 Glutaredoxin and relat 90.2 1.2 2.6E-05 32.9 6.1 63 32-102 6-73 (104)
418 COG1999 Uncharacterized protei 90.2 2.2 4.9E-05 36.0 8.6 72 30-101 57-135 (207)
419 cd02974 AhpF_NTD_N Alkyl hydro 89.6 5 0.00011 29.1 8.8 74 159-247 18-92 (94)
420 TIGR02654 circ_KaiB circadian 88.4 1.6 3.5E-05 30.9 5.3 75 41-118 3-77 (87)
421 PRK09301 circadian clock prote 88.1 1.7 3.6E-05 31.9 5.4 76 40-118 5-80 (103)
422 COG1651 DsbG Protein-disulfide 88.0 3.9 8.4E-05 35.4 8.8 39 204-248 204-242 (244)
423 cd03031 GRX_GRX_like Glutaredo 86.9 1.7 3.7E-05 34.4 5.4 51 163-221 2-66 (147)
424 TIGR02742 TrbC_Ftype type-F co 86.1 4.7 0.0001 31.2 7.2 23 204-226 60-82 (130)
425 COG3019 Predicted metal-bindin 85.0 16 0.00035 28.4 9.9 74 43-130 27-104 (149)
426 cd03040 GST_N_mPGES2 GST_N fam 84.9 4 8.6E-05 27.9 6.0 76 163-250 2-77 (77)
427 COG3019 Predicted metal-bindin 84.6 7.8 0.00017 30.1 7.6 75 161-249 26-104 (149)
428 cd02978 KaiB_like KaiB-like fa 84.5 3.3 7.2E-05 28.2 5.1 61 162-223 3-63 (72)
429 PF02630 SCO1-SenC: SCO1/SenC; 82.7 3.1 6.8E-05 34.0 5.4 57 27-83 39-97 (174)
430 cd03060 GST_N_Omega_like GST_N 81.3 3.2 7E-05 28.0 4.2 51 164-220 2-53 (71)
431 PHA03075 glutaredoxin-like pro 81.2 2 4.2E-05 32.0 3.1 29 160-188 2-30 (123)
432 cd03031 GRX_GRX_like Glutaredo 81.0 6 0.00013 31.4 6.1 51 44-102 2-66 (147)
433 cd02990 UAS_FAF1 UAS family, F 80.8 22 0.00048 27.7 9.1 91 37-129 18-132 (136)
434 PF09673 TrbC_Ftype: Type-F co 80.5 5.4 0.00012 30.0 5.5 45 176-224 36-80 (113)
435 KOG2507 Ubiquitin regulatory p 80.4 11 0.00024 34.9 8.2 97 31-128 6-109 (506)
436 cd02977 ArsC_family Arsenate R 79.7 0.93 2E-05 33.6 1.1 79 164-250 2-88 (105)
437 COG4545 Glutaredoxin-related p 79.4 1.7 3.8E-05 29.5 2.2 50 45-102 5-70 (85)
438 PHA03075 glutaredoxin-like pro 77.8 4 8.7E-05 30.4 3.9 30 41-70 2-31 (123)
439 cd03040 GST_N_mPGES2 GST_N fam 76.6 15 0.00033 24.9 6.6 75 44-130 2-76 (77)
440 PF07689 KaiB: KaiB domain; I 76.1 1.9 4E-05 30.4 1.7 58 47-105 3-60 (82)
441 PF09673 TrbC_Ftype: Type-F co 75.7 10 0.00023 28.5 5.8 45 57-105 36-80 (113)
442 TIGR02742 TrbC_Ftype type-F co 75.6 8.4 0.00018 29.8 5.3 45 85-129 60-114 (130)
443 cd00570 GST_N_family Glutathio 75.3 4.3 9.4E-05 26.4 3.5 52 164-221 2-55 (71)
444 KOG2507 Ubiquitin regulatory p 74.9 19 0.00041 33.5 8.1 92 157-248 16-110 (506)
445 cd03041 GST_N_2GST_N GST_N fam 74.6 4.8 0.00011 27.6 3.6 73 163-248 2-76 (77)
446 KOG2792 Putative cytochrome C 74.6 17 0.00037 31.4 7.3 45 39-83 138-187 (280)
447 cd03060 GST_N_Omega_like GST_N 74.5 6 0.00013 26.6 4.0 52 45-102 2-54 (71)
448 PF01323 DSBA: DSBA-like thior 74.3 6.2 0.00014 32.5 4.8 39 43-82 1-39 (193)
449 TIGR02654 circ_KaiB circadian 74.2 13 0.00028 26.5 5.5 75 160-237 3-77 (87)
450 PRK09301 circadian clock prote 73.8 13 0.00027 27.4 5.5 76 159-237 5-80 (103)
451 COG2761 FrnE Predicted dithiol 73.8 9.3 0.0002 32.5 5.6 43 206-253 175-217 (225)
452 COG3634 AhpF Alkyl hydroperoxi 72.2 81 0.0018 29.0 13.4 175 41-247 19-196 (520)
453 cd03041 GST_N_2GST_N GST_N fam 71.1 6.5 0.00014 27.0 3.6 71 45-128 3-75 (77)
454 COG2761 FrnE Predicted dithiol 70.8 6.5 0.00014 33.4 4.0 43 87-134 175-217 (225)
455 KOG1422 Intracellular Cl- chan 70.3 65 0.0014 27.1 10.2 114 170-298 20-139 (221)
456 cd00570 GST_N_family Glutathio 70.2 6.9 0.00015 25.4 3.5 52 45-102 2-55 (71)
457 cd03051 GST_N_GTT2_like GST_N 70.1 8.9 0.00019 25.6 4.1 52 164-221 2-57 (74)
458 PF06053 DUF929: Domain of unk 69.9 17 0.00037 31.5 6.5 63 36-107 54-116 (249)
459 cd03074 PDI_b'_Calsequestrin_C 69.8 43 0.00093 24.8 9.8 103 26-128 4-118 (120)
460 PF13417 GST_N_3: Glutathione 69.6 27 0.00057 23.7 6.4 72 46-132 1-73 (75)
461 cd02977 ArsC_family Arsenate R 69.4 4.5 9.8E-05 29.8 2.6 77 45-129 2-86 (105)
462 cd03037 GST_N_GRX2 GST_N famil 69.2 6.4 0.00014 26.4 3.1 51 164-220 2-52 (71)
463 PF04592 SelP_N: Selenoprotein 68.3 10 0.00022 32.3 4.6 48 38-85 24-73 (238)
464 cd03036 ArsC_like Arsenate Red 67.2 2 4.3E-05 32.2 0.3 79 164-250 2-89 (111)
465 cd03037 GST_N_GRX2 GST_N famil 66.8 7.9 0.00017 25.9 3.2 51 46-102 3-53 (71)
466 COG1999 Uncharacterized protei 65.9 34 0.00073 28.9 7.5 65 158-222 66-137 (207)
467 PF13778 DUF4174: Domain of un 65.5 57 0.0012 24.7 8.4 90 37-129 7-111 (118)
468 TIGR01617 arsC_related transcr 64.8 12 0.00026 28.2 4.2 33 45-85 2-34 (117)
469 COG3531 Predicted protein-disu 64.6 14 0.00031 30.6 4.6 44 205-249 164-209 (212)
470 PF02630 SCO1-SenC: SCO1/SenC; 64.4 20 0.00043 29.3 5.7 54 158-211 51-109 (174)
471 cd03045 GST_N_Delta_Epsilon GS 64.3 12 0.00026 25.1 3.8 51 164-220 2-56 (74)
472 cd03051 GST_N_GTT2_like GST_N 64.2 13 0.00027 24.8 3.9 52 45-102 2-57 (74)
473 cd03059 GST_N_SspA GST_N famil 63.6 8.2 0.00018 25.9 2.8 69 164-247 2-71 (73)
474 TIGR01617 arsC_related transcr 63.1 13 0.00027 28.1 4.0 76 164-250 2-89 (117)
475 cd03035 ArsC_Yffb Arsenate Red 61.8 7.9 0.00017 28.7 2.6 20 45-64 2-21 (105)
476 cd03036 ArsC_like Arsenate Red 58.9 9.5 0.00021 28.5 2.6 76 45-129 2-87 (111)
477 PRK13730 conjugal transfer pil 58.8 21 0.00045 29.8 4.7 41 204-246 151-191 (212)
478 PRK01655 spxA transcriptional 58.3 12 0.00025 29.0 3.1 20 44-63 2-21 (131)
479 cd03059 GST_N_SspA GST_N famil 58.1 15 0.00033 24.5 3.4 69 45-128 2-71 (73)
480 PF13778 DUF4174: Domain of un 57.8 80 0.0017 23.9 9.1 41 206-246 68-109 (118)
481 cd03035 ArsC_Yffb Arsenate Red 57.4 6.6 0.00014 29.1 1.5 20 164-183 2-21 (105)
482 PF06053 DUF929: Domain of unk 57.2 41 0.0009 29.2 6.5 58 157-224 56-114 (249)
483 COG4545 Glutaredoxin-related p 54.5 25 0.00053 24.1 3.6 21 164-184 5-25 (85)
484 cd03045 GST_N_Delta_Epsilon GS 53.6 18 0.00039 24.2 3.2 51 45-101 2-56 (74)
485 PRK12559 transcriptional regul 53.3 9.1 0.0002 29.7 1.7 83 163-251 2-89 (131)
486 cd03024 DsbA_FrnE DsbA family, 52.5 19 0.00041 29.9 3.7 37 204-245 164-200 (201)
487 cd03032 ArsC_Spx Arsenate Redu 50.2 19 0.00042 27.0 3.1 21 44-64 2-22 (115)
488 COG1651 DsbG Protein-disulfide 50.1 37 0.00081 29.2 5.3 29 41-69 85-113 (244)
489 PRK12559 transcriptional regul 49.8 19 0.00042 27.8 3.1 20 44-63 2-21 (131)
490 PF01323 DSBA: DSBA-like thior 48.9 25 0.00054 28.8 3.9 38 204-246 156-193 (193)
491 PF07689 KaiB: KaiB domain; I 48.8 6.6 0.00014 27.6 0.3 55 166-221 3-57 (82)
492 cd03055 GST_N_Omega GST_N fami 48.7 34 0.00074 24.1 4.1 54 162-221 18-72 (89)
493 PRK01655 spxA transcriptional 47.9 14 0.0003 28.6 2.0 22 163-184 2-23 (131)
494 cd03055 GST_N_Omega GST_N fami 47.8 43 0.00094 23.6 4.5 54 43-102 18-72 (89)
495 cd03070 PDI_b_ERp44 PDIb famil 47.8 1E+02 0.0022 22.1 7.5 71 157-237 14-85 (91)
496 PF04134 DUF393: Protein of un 47.7 28 0.0006 25.9 3.6 56 166-225 2-60 (114)
497 cd03024 DsbA_FrnE DsbA family, 44.6 26 0.00057 29.0 3.4 36 86-126 165-200 (201)
498 KOG2792 Putative cytochrome C 44.2 1.6E+02 0.0035 25.7 7.9 45 158-202 138-187 (280)
499 PF04592 SelP_N: Selenoprotein 41.8 41 0.00089 28.8 4.0 46 157-202 24-71 (238)
500 PF04134 DUF393: Protein of un 41.5 46 0.001 24.6 4.0 53 47-103 2-56 (114)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-42 Score=314.55 Aligned_cols=227 Identities=47% Similarity=0.886 Sum_probs=207.0
Q ss_pred cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCe
Q 018270 21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPT 99 (358)
Q Consensus 21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~ 99 (358)
....|..||.+||.+.+..+..++|.||||||+||+++.|+|+++|+.++.. ..+.+++|||+++.++|.+|+|.+|||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 4678999999999999999999999999999999999999999999999865 489999999999999999999999999
Q ss_pred EEEccCCCCCcccccCCCCHHHHHHHHhccCCCCcccc------------------------------------------
Q 018270 100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIA------------------------------------------ 137 (358)
Q Consensus 100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~------------------------------------------ 137 (358)
+.+|++|.. +..|.|+|++++|+.|+....++.....
T Consensus 103 lkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~ 181 (493)
T KOG0190|consen 103 LKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDY 181 (493)
T ss_pred EEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccc
Confidence 999999976 5899999999999999999888775310
Q ss_pred --------------------------------------------------------------------------------
Q 018270 138 -------------------------------------------------------------------------------- 137 (358)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (358)
T Consensus 182 ~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~ 261 (493)
T KOG0190|consen 182 KFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF 261 (493)
T ss_pred eeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 018270 138 -------------------------------------------------------------------------------- 137 (358)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (358)
T Consensus 262 ~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f 341 (493)
T KOG0190|consen 262 FVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESF 341 (493)
T ss_pred EeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHH
Confidence
Q ss_pred ----------------C----C-CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEE
Q 018270 138 ----------------A----V-PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196 (358)
Q Consensus 138 ----------------~----~-~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~ 196 (358)
+ . .+.|..+.++||+.++.+.++.|+|.||||||+||+++.|.|++||+.|++++++++
T Consensus 342 ~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vvi 421 (493)
T KOG0190|consen 342 VKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVI 421 (493)
T ss_pred HHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEE
Confidence 1 1 145899999999999999999999999999999999999999999999999889999
Q ss_pred EEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcC
Q 018270 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 197 ~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
+++|++.|+ .....+++||||++|+.|++ .++.|.|+|+.++|..|+.+..+
T Consensus 422 AKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 422 AKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecccccc--CccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 999999887 45667888999999999986 69999999999999999987544
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=2e-35 Score=283.17 Aligned_cols=227 Identities=37% Similarity=0.797 Sum_probs=199.0
Q ss_pred CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 101 (358)
..+..++.++|++.++++++++|.||++||++|+++.|.|.+++..++.. .++.++.|||+++.++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 46899999999999988999999999999999999999999999888643 47999999999999999999999999999
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhccCCCCccc---------------------------------------------
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI--------------------------------------------- 136 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~--------------------------------------------- 136 (358)
+|++|+. ..|.|.++.+++.+|+.+..++....
T Consensus 112 ~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~ 189 (477)
T PTZ00102 112 FFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAK 189 (477)
T ss_pred EEECCce--EEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccce
Confidence 9998864 38999999999999887654322100
Q ss_pred ------------------------------------------c-------------------------------------
Q 018270 137 ------------------------------------------A------------------------------------- 137 (358)
Q Consensus 137 ------------------------------------------~------------------------------------- 137 (358)
+
T Consensus 190 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (477)
T PTZ00102 190 FFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVV 269 (477)
T ss_pred EEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHH
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 018270 138 -------------------------------------------------------------------------------- 137 (358)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (358)
T Consensus 270 ~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se 349 (477)
T PTZ00102 270 RKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSE 349 (477)
T ss_pred HHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccC
Confidence
Q ss_pred CC----CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC
Q 018270 138 AV----PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213 (358)
Q Consensus 138 ~~----~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v 213 (358)
+. ...+..+++.+|++.+.+.+++++|.|||+||++|+.+.|.|+++++.++..+.+.++.+|++.++..++.|++
T Consensus 350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v 429 (477)
T PTZ00102 350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW 429 (477)
T ss_pred CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC
Confidence 00 12367788999999887889999999999999999999999999999997666899999999999999999999
Q ss_pred CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 251 (358)
Q Consensus 214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (358)
+++||+++|++|++.+..|.|.++.+.+.+||++++..
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 99999999999887778899999999999999998753
No 3
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-32 Score=252.01 Aligned_cols=225 Identities=51% Similarity=0.873 Sum_probs=197.8
Q ss_pred CeEEcChhhHHH-HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 24 DVVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 24 ~v~~l~~~~f~~-~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
....++..+|.. ....+.+++|+||+|||+||+.+.|+|.+++..++ +.+.++.|||+++.++|.+|+|.++||+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~--~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALK--GKVKIGAVDCDEHKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhc--CceEEEEeCchhhHHHHHhcCCccCcEEEE
Confidence 334444444444 44888999999999999999999999999999998 479999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHH
Q 018270 103 FPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYE 182 (358)
Q Consensus 103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~ 182 (358)
|.++ ..+..|.|.++.+.+.+|............... .+..++..+|+..+.+.+..++|.||+|||++|+.+.|.|+
T Consensus 108 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 108 FRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEG-EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred EcCC-CceeeccCcccHHHHHHHHHHhhccccccccCC-ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHH
Confidence 9998 556899999999999999998777655432222 58899999999999888999999999999999999999999
Q ss_pred HHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270 183 KVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252 (358)
Q Consensus 183 ~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (358)
+++..+.....+.++.+|++....++.+++|.++||+.+|++|......|.|.++.+.++.|+++..+..
T Consensus 186 ~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 186 KLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred HHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9999997667899999999999999999999999999999988653566788999999999999987764
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.97 E-value=1.8e-30 Score=248.10 Aligned_cols=226 Identities=50% Similarity=0.932 Sum_probs=191.6
Q ss_pred CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
.+..+++++|.++++++++++|.|||+||++|+.+.|.|.++++.+.+. ..+.++.|||++++++|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 5788999999999999999999999999999999999999999988643 469999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHhccCCCCccc----------------------------------------------
Q 018270 103 FPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI---------------------------------------------- 136 (358)
Q Consensus 103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~---------------------------------------------- 136 (358)
|.+|+.....|.|.++.+++.+|+.+..++....
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 9887652478888888888887776544322100
Q ss_pred ---------------------------------c----------------------------------------------
Q 018270 137 ---------------------------------A---------------------------------------------- 137 (358)
Q Consensus 137 ---------------------------------~---------------------------------------------- 137 (358)
.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~ 241 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYY 241 (462)
T ss_pred EEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEE
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 018270 138 -------------------------------------------------------------------------------- 137 (358)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (358)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~ 321 (462)
T TIGR01130 242 NVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEA 321 (462)
T ss_pred EecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHH
Confidence
Q ss_pred -----------------CC----CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeE
Q 018270 138 -----------------AV----PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVV 195 (358)
Q Consensus 138 -----------------~~----~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~ 195 (358)
+. ...+..++..+|++.+.+.+++++|.||++||++|+.+.|.++++++.+.. +..+.
T Consensus 322 fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~ 401 (462)
T TIGR01130 322 FVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVV 401 (462)
T ss_pred HHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEE
Confidence 11 225677888999998878889999999999999999999999999999975 33799
Q ss_pred EEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCC
Q 018270 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT 251 (358)
Q Consensus 196 ~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~ 251 (358)
++.+|++.+. +.. +++.++||+++|++|++ .+..|.|.++.+.|.+||.++...
T Consensus 402 ~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 402 IAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred EEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 9999999775 333 99999999999999876 578899999999999999987643
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.96 E-value=1.8e-28 Score=209.20 Aligned_cols=200 Identities=25% Similarity=0.318 Sum_probs=158.4
Q ss_pred hhHHHHhcCCCcEEEEEEC---CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 31 DNFEKEVGQDRGALVEFYA---PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 31 ~~f~~~~~~~~~~lv~fya---~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
+.|.+.++++. .++.|++ +||++|+.+.|.++++++.+.. -.+.++.+|.+++++++++|+|.++||+++|++|.
T Consensus 11 ~~~~~~~~~~~-~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 11 ELFLKELKNPV-EIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred HHHHHhcCCCe-EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence 34444454444 4666888 9999999999999999998842 24667788888999999999999999999999876
Q ss_pred CCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCc-EEEEEcCCCCcccchhhhhHHHHHH
Q 018270 108 LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAA 186 (358)
Q Consensus 108 ~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~-v~v~f~a~~C~~c~~~~~~~~~la~ 186 (358)
....++.|..+.+++.+||+...+.... ...++..+.+.+- ...++ +++.||++||++|+.+.|.+++++.
T Consensus 89 ~~~~~~~G~~~~~~l~~~i~~~~~~~~~-------~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~ 160 (215)
T TIGR02187 89 DGGIRYTGIPAGYEFAALIEDIVRVSQG-------EPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHKFAL 160 (215)
T ss_pred eeEEEEeecCCHHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 5435889999999999999877543211 1244555555544 33444 5566999999999999999999988
Q ss_pred HhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270 187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 187 ~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
.. +++.+..+|.+.+++++++|+|.++||++++.+|. .+.|..+.++|.+||.+
T Consensus 161 ~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 161 AN---DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred hc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 74 57889999999999999999999999999987652 38899999999999874
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=4.1e-23 Score=156.17 Aligned_cols=105 Identities=19% Similarity=0.406 Sum_probs=95.0
Q ss_pred hccCCCeEEcChhhHHHH---hcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH-hhcCc
Q 018270 19 SALADDVVVLTEDNFEKE---VGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC-SKYGV 94 (358)
Q Consensus 19 ~~~~~~v~~l~~~~f~~~---~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~-~~~~i 94 (358)
++..+.|.+|++++|++. ++++++++|.|||+||+||+.+.|.|+++++.++ +.+.|++|||+++.++| ++|+|
T Consensus 5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I 82 (113)
T cd03006 5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHF 82 (113)
T ss_pred cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCC
Confidence 455678999999999987 4889999999999999999999999999999997 45999999999999999 58999
Q ss_pred cCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270 95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
.++||+++|.+|.. +..|.|.++.+.|..|+
T Consensus 83 ~~~PTl~lf~~g~~-~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 83 FYFPVIHLYYRSRG-PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cccCEEEEEECCcc-ceEEeCCCCHHHHHhhC
Confidence 99999999987764 58999999999999874
No 7
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=99.89 E-value=4.5e-23 Score=150.09 Aligned_cols=95 Identities=41% Similarity=0.667 Sum_probs=86.6
Q ss_pred cchhhHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhccCChhh
Q 018270 264 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAK 343 (358)
Q Consensus 264 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~ 343 (358)
|+++++|.++..|+...++.+.+++++++..+..+++....+++||+++|+||+++|.+|+++|++||++||+++++++|
T Consensus 1 G~i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~~l~~~K 80 (95)
T PF07749_consen 1 GRIEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEIARLERLLEGKLSPEK 80 (95)
T ss_dssp T--HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHHHHHHHHHHSSS-HHH
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHHHHHHHHHhccCCHHH
Confidence 68899999999999998888999999999999999887779999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhhhcccC
Q 018270 344 ADEFVLKKNILSTFT 358 (358)
Q Consensus 344 ~~~~~~~~nil~~f~ 358 (358)
+|+|++|+|||++|.
T Consensus 81 ~del~~R~NIL~~F~ 95 (95)
T PF07749_consen 81 KDELQKRLNILSSFQ 95 (95)
T ss_dssp HHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999995
No 8
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.88 E-value=1.1e-21 Score=165.16 Aligned_cols=221 Identities=26% Similarity=0.490 Sum_probs=150.4
Q ss_pred ChhHHHHHHHHHHHHHhhhc-----cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCC-c
Q 018270 1 MERYQIWLALGTLTLFFVSA-----LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK-S 74 (358)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~-~ 74 (358)
|..+.++-++-+++++++.. ....|.+|++ .|.+ .+.+..|+|.||||||+||+++.|.|.++.-.+++.+ .
T Consensus 1 Maaw~~~~aLrLca~l~VlDm~ackgpt~VeDLdd-kFkd-nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 1 MAAWFLLPALRLCALLFVLDMEACKGPTAVEDLDD-KFKD-NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred CchhhhhHHHHHhhhheeeeeeccCCchhhhhhhH-Hhhh-cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence 66665555444444443322 1224555553 3433 2456789999999999999999999999999888654 8
Q ss_pred eEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCccc--HH
Q 018270 75 VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADN--FD 152 (358)
Q Consensus 75 v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~--f~ 152 (358)
|.++++||+.-+.++.+|+|++||||.+|+++ ..+.|.|+|..+.|.+|..+..++-.. .++.++ |.
T Consensus 79 ikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~R~Kd~iieFAhR~a~aiI~---------pi~enQ~~fe 147 (468)
T KOG4277|consen 79 IKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGGREKDAIIEFAHRCAAAIIE---------PINENQIEFE 147 (468)
T ss_pred eeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCCccHHHHHHHHHhcccceee---------ecChhHHHHH
Confidence 99999999999999999999999999999877 458999999999999999887654332 244333 33
Q ss_pred HHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcC-CCcccEEEEEeCCCcceee
Q 018270 153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG-VSGFPTLKFFPKGNKDGEE 231 (358)
Q Consensus 153 ~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pti~~~~~g~~~~~~ 231 (358)
+ ++...++.+|.|.+.-. .+...|.+.|.. .+.++..-.. ..+++-.++ ....|.+.+|++.. +.
T Consensus 148 h-lq~Rhq~ffVf~Gtge~----PL~d~fidAASe-----~~~~a~FfSa-seeVaPe~~~~kempaV~VFKDet---f~ 213 (468)
T KOG4277|consen 148 H-LQARHQPFFVFFGTGEG----PLFDAFIDAASE-----KFSVARFFSA-SEEVAPEENDAKEMPAVAVFKDET---FE 213 (468)
T ss_pred H-HhhccCceEEEEeCCCC----cHHHHHHHHhhh-----heeeeeeecc-ccccCCcccchhhccceEEEccce---eE
Confidence 3 34677888888876531 233344444443 2334433221 122233332 34589999998752 33
Q ss_pred ecCCCCHHHHHHHHHHh
Q 018270 232 YGGGRDLEDFVSFINEK 248 (358)
Q Consensus 232 ~~g~~~~~~l~~~i~~~ 248 (358)
.....+.++|.+||++.
T Consensus 214 i~de~dd~dLseWinRE 230 (468)
T KOG4277|consen 214 IEDEGDDEDLSEWINRE 230 (468)
T ss_pred EEecCchhHHHHHHhHh
Confidence 34456788999999864
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=3e-22 Score=151.45 Aligned_cols=103 Identities=19% Similarity=0.316 Sum_probs=92.7
Q ss_pred CCCceEcCcccHHHHH--hcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHH-HhcCCCcc
Q 018270 140 PSNVVVLTADNFDEIV--LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA-EKYGVSGF 216 (358)
Q Consensus 140 ~~~v~~l~~~~f~~~~--~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~-~~~~v~~~ 216 (358)
.+.+++++..+|++.+ ...++.++|.||||||++|+.+.|.|+++|+.++ +.+.|++|||+.+.+++ ++|+|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCCccc
Confidence 4568999999999873 3788999999999999999999999999999995 45899999999999999 58999999
Q ss_pred cEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
||+.+|++|. .+..|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 9999998875 678899999999999874
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=7.4e-22 Score=148.12 Aligned_cols=100 Identities=35% Similarity=0.791 Sum_probs=92.2
Q ss_pred CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 103 (358)
++..+|.++|++.+..+++++|.||++||++|+.+.|.|+++++.++ +.+.|+.|||++++.+|++++|.++||+++|
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 57899999999999888999999999999999999999999999997 5699999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHH
Q 018270 104 PKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
+.|.. ...|.|.++.++|.+|.
T Consensus 80 ~~g~~-~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 80 PSGMN-PEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCCCC-cccCCCCCCHHHHHhhC
Confidence 87754 58899999999998873
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=7.3e-22 Score=150.03 Aligned_cols=104 Identities=38% Similarity=0.740 Sum_probs=94.0
Q ss_pred CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC----CceEEEEEeCccchhhHhhcCccCCC
Q 018270 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA----KSVLIGKVDCDEHKSLCSKYGVQGYP 98 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~----~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (358)
+++.++++++|++.++.+++++|.|||+||++|+.+.|.|+++++.+++. +.+.++.+||++++++|++|+|+++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 36789999999999988899999999999999999999999999887532 35999999999999999999999999
Q ss_pred eEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270 99 TIQWFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
|+++|++|......|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999988874558899999999999986
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1e-21 Score=148.28 Aligned_cols=102 Identities=34% Similarity=0.774 Sum_probs=93.9
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
.+.+++..+|++.+.+.+++++|.||++||++|+.+.|.|+++++.+. +.+.++.+|++++++++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 467889999999987778899999999999999999999999999984 569999999999999999999999999999
Q ss_pred EeCCCcceeeecCCCC-HHHHHHHH
Q 018270 222 FPKGNKDGEEYGGGRD-LEDFVSFI 245 (358)
Q Consensus 222 ~~~g~~~~~~~~g~~~-~~~l~~~i 245 (358)
|++|+.....|.|..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9998678889999987 99999885
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=1.1e-21 Score=149.06 Aligned_cols=103 Identities=39% Similarity=0.721 Sum_probs=93.2
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC----CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE----DDVVVANLDADKYKDLAEKYGVSGFP 217 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~----~~v~~~~vd~~~~~~l~~~~~v~~~P 217 (358)
++.++++++|++.+ ..+++++|.||+|||++|+.+.|.|+++++.++.+ +++.++.+|++.+++++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 57889999999987 77889999999999999999999999999987432 35999999999999999999999999
Q ss_pred EEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 218 TLKFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
|+++|++|......|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999998865668899999999999985
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1.5e-21 Score=147.27 Aligned_cols=101 Identities=36% Similarity=0.791 Sum_probs=92.1
Q ss_pred CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
.+.+++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.+. +.+.++.+||++++++|++++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 56789999999987 556799999999999999999999999999986 569999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCC-HHHHHHHH
Q 018270 103 FPKGSLEPKKYEGPRS-TEALAEYV 126 (358)
Q Consensus 103 ~~~~~~~~~~~~g~~~-~~~i~~~i 126 (358)
|.+|+....+|.|..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9998566789999987 99999885
No 15
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.6e-22 Score=184.22 Aligned_cols=158 Identities=35% Similarity=0.649 Sum_probs=127.0
Q ss_pred CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270 139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP 217 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~P 217 (358)
.++.|..|+.+||+..+ ..+..++|.||||||+||+.+.|.|.++|..+... +.+..++|||+.+.++|.+|+|++||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 56789999999999999 78889999999999999999999999999999755 48999999999999999999999999
Q ss_pred EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCCCCccccccchhhHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Q 018270 218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEV 297 (358)
Q Consensus 218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 297 (358)
|+.+|++|.. +..|.|+|+++.++.|+.++.|+............+....-+..+..|+.+........+..+....++
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d 180 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDD 180 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhcccc
Confidence 9999999964 799999999999999999999988766555555555444434444455544333224444444444444
Q ss_pred h
Q 018270 298 L 298 (358)
Q Consensus 298 ~ 298 (358)
+
T Consensus 181 ~ 181 (493)
T KOG0190|consen 181 Y 181 (493)
T ss_pred c
Confidence 3
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=3.1e-21 Score=144.72 Aligned_cols=99 Identities=32% Similarity=0.675 Sum_probs=90.9
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
++.+++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.++ +.+.|+.+||++++.++++|+|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 57789999999998 667999999999999999999999999999996 469999999999999999999999999999
Q ss_pred EeCCCcceeeecCCCCHHHHHHH
Q 018270 222 FPKGNKDGEEYGGGRDLEDFVSF 244 (358)
Q Consensus 222 ~~~g~~~~~~~~g~~~~~~l~~~ 244 (358)
|++|. ....|.|.++.++|.+|
T Consensus 79 ~~~g~-~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGM-NPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCC-CcccCCCCCCHHHHHhh
Confidence 98874 57789999999999887
No 17
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=99.86 E-value=2e-21 Score=140.01 Aligned_cols=91 Identities=43% Similarity=0.724 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhcc-CChhhhh
Q 018270 267 ASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKAD 345 (358)
Q Consensus 267 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~-~~~~~~~ 345 (358)
+.+|.++..|++.+++.+.++++++++.++.+++...++++||+++|+||+++|.+|+.+|++||++||+++ ++++|+|
T Consensus 2 ~~lD~la~~f~~~~~~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~d 81 (93)
T cd00238 2 EELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKAD 81 (93)
T ss_pred hhHHHHHHHHhccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 568999999999888889999999999999998777899999999999999999999999999999999985 6999999
Q ss_pred hhHHhhhhhccc
Q 018270 346 EFVLKKNILSTF 357 (358)
Q Consensus 346 ~~~~~~nil~~f 357 (358)
+|+.|+|||++|
T Consensus 82 el~~R~NIL~~F 93 (93)
T cd00238 82 ELTRRLNILRSF 93 (93)
T ss_pred HHHHHHHHHhcC
Confidence 999999999998
No 18
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-21 Score=149.36 Aligned_cols=106 Identities=30% Similarity=0.569 Sum_probs=96.8
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
.+..++..+|++.+.+.+.||+|+|||+||+||+.+.|.+++++..|. +.+.++++|.|++.+++.+|+|.++||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 355578899999998999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred EeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270 222 FPKGNKDGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
|++|. ....+.|..+.+.|.++|++.+.
T Consensus 122 fknGe-~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGE-KVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence 99884 45688999999999999988653
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=8.2e-21 Score=144.47 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcc--cc--hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGH--CK--NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 216 (358)
Q Consensus 141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~--c~--~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~ 216 (358)
..+..+|.+||++.+.+.+.++++.||++||+| |+ .+.|.+.++|..+-..+++.|++||++++++++++|||.++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 357889999999999888889999999999988 99 78899999999884346799999999999999999999999
Q ss_pred cEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
||+++|++|. ...|.|.++.+.|.+||.+.
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHHH
Confidence 9999999885 34599999999999999864
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=1.6e-20 Score=141.44 Aligned_cols=103 Identities=41% Similarity=0.829 Sum_probs=95.0
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 222 (358)
|..++.++|++.+.+.+++++|.||++||++|+.+.|.|.++++.+.. ++.++.+|++++..++++|+|.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999966689999999999999999999999999999964 899999999999999999999999999999
Q ss_pred eCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 223 PKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 223 ~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
.+|. ...+|.|.++.+.|.+||+++
T Consensus 79 ~~g~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGK-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTE-EEEEEESSSSHHHHHHHHHHH
T ss_pred ECCc-EEEEEECCCCHHHHHHHHHcC
Confidence 9885 455899999999999999875
No 21
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=158.85 Aligned_cols=107 Identities=36% Similarity=0.696 Sum_probs=94.1
Q ss_pred CCCeEEcChhhHHHHhcC-----CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC
Q 018270 22 ADDVVVLTEDNFEKEVGQ-----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG 96 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~-----~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 96 (358)
...+.++|+++|++.+.. +++++|+||++||++|+.+.|.|+++++.++ +.+.++.+||+++++++++|+|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence 356899999999998732 5799999999999999999999999999997 569999999999999999999999
Q ss_pred CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270 97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ 131 (358)
+||+++|++|. ....+.|.++.+++.+|+.+...
T Consensus 107 ~PTl~~f~~G~-~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGK-MYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCE-EEEeeCCCCCHHHHHHHHHHHHH
Confidence 99999999775 32445688999999999987653
No 22
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=1e-20 Score=142.47 Aligned_cols=102 Identities=49% Similarity=0.967 Sum_probs=94.8
Q ss_pred eEEcChhhHHHHhcC-CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270 25 VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 25 v~~l~~~~f~~~~~~-~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 103 (358)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++ .+.++.||+++++.+|++|+|.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 568899999999976 89999999999999999999999999999974 899999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 104 PKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
.+|... .+|.|.++.++|.+||+++
T Consensus 79 ~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred ECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 988755 6999999999999999753
No 23
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.84 E-value=1.5e-20 Score=141.08 Aligned_cols=100 Identities=24% Similarity=0.408 Sum_probs=87.3
Q ss_pred CeEEcChhhHHHHhcCCCcEEEEEEC--CCCh---hhhhhhHHHHHHHHHhhcCCceEEEEEeC-----ccchhhHhhcC
Q 018270 24 DVVVLTEDNFEKEVGQDRGALVEFYA--PWCG---HCKKLAPEYEKLGASFKKAKSVLIGKVDC-----DEHKSLCSKYG 93 (358)
Q Consensus 24 ~v~~l~~~~f~~~~~~~~~~lv~fya--~~c~---~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~l~~~~~ 93 (358)
.+..||+.||++.+++++.+||.||| |||+ +|+++.|.+.+.+. .|.++.||| .++.+||++|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 46889999999999999999999999 8898 77777777766553 388999999 56789999999
Q ss_pred cc--CCCeEEEccCCC-CCcccccCC-CCHHHHHHHHhcc
Q 018270 94 VQ--GYPTIQWFPKGS-LEPKKYEGP-RSTEALAEYVNNE 129 (358)
Q Consensus 94 i~--~~P~l~~~~~~~-~~~~~~~g~-~~~~~i~~~i~~~ 129 (358)
|+ +|||+++|.+|. ..+..|+|. ++.++|.+|+.++
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 999999999874 356899997 9999999999865
No 24
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.5e-20 Score=174.40 Aligned_cols=204 Identities=40% Similarity=0.759 Sum_probs=163.6
Q ss_pred CCC-eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270 22 ADD-VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99 (358)
Q Consensus 22 ~~~-v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 99 (358)
... +..++..+|.+.+ ..+..++|.||+|||+||+.+.|.|++++..++....+.++.+||+....+|.+++|.++|+
T Consensus 142 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 142 VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 344 8999999999877 66778999999999999999999999999999766789999999999999999999999999
Q ss_pred EEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccC-----CCC-CceEc-CcccHHHHHhcCCCcEEEEEcCCCCc
Q 018270 100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAA-----VPS-NVVVL-TADNFDEIVLDKSKDVLVEFYAPWCG 172 (358)
Q Consensus 100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~-----~~~-~v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~ 172 (358)
+.+|.++......|.|.|+.+.+..|+....+....+.. .++ ....+ +.++|.... ......++.|+++||+
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~ 300 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWCG 300 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchhh
Confidence 999998876347788999999999999988766421111 110 01111 111221111 3445789999999999
Q ss_pred ccchhhhhHHHHHHH-hcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270 173 HCKNLAPTYEKVAAA-FTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 226 (358)
Q Consensus 173 ~c~~~~~~~~~la~~-~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 226 (358)
+|....|.+...+.. +.....+.+.+++|.....+|.+..++++|++.++..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 301 HCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred cccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence 999999999999988 223457889999999888899999999999999998764
No 25
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.84 E-value=4.3e-20 Score=155.82 Aligned_cols=206 Identities=25% Similarity=0.467 Sum_probs=148.1
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC---CceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA---KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 104 (358)
Q Consensus 28 l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 104 (358)
++.+|+++++..+..++|.|||+||+.++.+.|.|+++++.++.. +.+.++.|||+++..++.+|.|+.|||+.+|.
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 467889999988999999999999999999999999999887632 68999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHH
Q 018270 105 KGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK 183 (358)
Q Consensus 105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~ 183 (358)
+|.....+|.|.|+++.+.+||.......+. +. +-..+......+.+.++..|-....+ ....+.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~---------Ef~sl~~l~n~~~p~K~~vIgyF~~kdsp----ey~~~~k 147 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPIN---------EFESLDQLQNLDIPSKRTVIGYFPSKDSP----EYDNLRK 147 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHH---------HHHhHHHHHhhhccccceEEEEeccCCCc----hHHHHHH
Confidence 9986656999999999999999987654322 12 22334444422344555555433322 2346778
Q ss_pred HHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcce-eeecCC-CCHHHHHHHHHHhcCCCC
Q 018270 184 VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGG-RDLEDFVSFINEKCGTSR 253 (358)
Q Consensus 184 la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~-~~~~g~-~~~~~l~~~i~~~~~~~~ 253 (358)
+|..++.+-.+.++.-|.. ....-.+.| +++|+++...+ ..|.|. .+.+.+..||++.|-+-.
T Consensus 148 va~~lr~dc~f~V~~gD~~------~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV 212 (375)
T KOG0912|consen 148 VASLLRDDCVFLVGFGDLL------KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV 212 (375)
T ss_pred HHHHHhhccEEEeeccccc------cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence 8888864433433332221 111122333 45666554433 368887 579999999999886543
No 26
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.84 E-value=1.8e-20 Score=140.68 Aligned_cols=100 Identities=24% Similarity=0.459 Sum_probs=83.4
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcC--CCCc---ccchhhhhHHHHHHHhcCCCCeEEEEEeC-----cccHHHHHhc
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYA--PWCG---HCKNLAPTYEKVAAAFTLEDDVVVANLDA-----DKYKDLAEKY 211 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a--~~C~---~c~~~~~~~~~la~~~~~~~~v~~~~vd~-----~~~~~l~~~~ 211 (358)
.++.|+..||++++ ...+.++|.||| |||+ +|+.+.|.+.+.+ ..+.+++||| .++.+||++|
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa------~~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT------DDLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc------CceEEEEEecccccchhhHHHHHHh
Confidence 36789999999998 788899999999 7777 5555555554443 3589999999 4678899999
Q ss_pred CCC--cccEEEEEeCCC-cceeeecCC-CCHHHHHHHHHHh
Q 018270 212 GVS--GFPTLKFFPKGN-KDGEEYGGG-RDLEDFVSFINEK 248 (358)
Q Consensus 212 ~v~--~~Pti~~~~~g~-~~~~~~~g~-~~~~~l~~~i~~~ 248 (358)
+|+ +|||+.+|.+|. ..+..|.|+ ++.++|++||+++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999884 367899997 9999999999875
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.83 E-value=4.6e-20 Score=140.50 Aligned_cols=101 Identities=49% Similarity=0.920 Sum_probs=91.7
Q ss_pred eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEE
Q 018270 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~ 101 (358)
+.++++++|++.+ +.+++++|.||++||++|+++.|.|.++++.+. +.+.++.+||+. ++++|++|+|.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 6789999999988 567789999999999999999999999999987 568899999998 88999999999999999
Q ss_pred EccCCC----CCcccccCCCCHHHHHHHHh
Q 018270 102 WFPKGS----LEPKKYEGPRSTEALAEYVN 127 (358)
Q Consensus 102 ~~~~~~----~~~~~~~g~~~~~~i~~~i~ 127 (358)
+|.+++ ..+..|.|.++.+++.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999886 34578999999999999973
No 28
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.83 E-value=4e-20 Score=140.81 Aligned_cols=101 Identities=50% Similarity=0.872 Sum_probs=92.5
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~ 220 (358)
+.+++..+|++.+.+.+++++|.||++||++|+.+.|.|+++++.+. +.+.++.+|++. +.+++++|+|.++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 57899999999997788899999999999999999999999999985 468899999998 88999999999999999
Q ss_pred EEeCCC----cceeeecCCCCHHHHHHHH
Q 018270 221 FFPKGN----KDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 221 ~~~~g~----~~~~~~~g~~~~~~l~~~i 245 (358)
+|++|+ .....|.|.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 999886 3567899999999999997
No 29
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.83 E-value=6e-20 Score=137.77 Aligned_cols=100 Identities=32% Similarity=0.661 Sum_probs=89.1
Q ss_pred CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 103 (358)
.|.+++.++|++.+++ . ++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+||++++.++++|+|.++||+++|
T Consensus 2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 5789999999998854 3 89999999999999999999999997653 3699999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHhc
Q 018270 104 PKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
.+|. . ..|.|.++.++|.+|+++
T Consensus 79 ~~g~-~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGV-F-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCC-E-EEecCCCCHHHHHHHHhC
Confidence 7764 3 789999999999999864
No 30
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.83 E-value=5.8e-20 Score=137.87 Aligned_cols=100 Identities=36% Similarity=0.660 Sum_probs=88.9
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
.+.+++.++|++++ . +. ++|.||++||++|+.+.|.|+++++.+. ..++.++.+|+++++.++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~-~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~-~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSD-DLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhc-cCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 47889999999987 3 33 7899999999999999999999999764 3469999999999999999999999999999
Q ss_pred EeCCCcceeeecCCCCHHHHHHHHHH
Q 018270 222 FPKGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 222 ~~~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
|++|. ...|.|.++.++|.+||++
T Consensus 78 ~~~g~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGV--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCC--EEEecCCCCHHHHHHHHhC
Confidence 98874 4789999999999999863
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=5.4e-20 Score=139.76 Aligned_cols=103 Identities=30% Similarity=0.701 Sum_probs=91.3
Q ss_pred CceEcCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHH-hcCCCccc
Q 018270 142 NVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAE-KYGVSGFP 217 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~-~~~v~~~P 217 (358)
.|.+++..+|+.++. +.+++++|.||++||++|+++.|.|.++++.++ ..++.++.||++. +..++. .|+|.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-GSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc-cCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 478899999999884 357899999999999999999999999999997 3469999999997 577886 49999999
Q ss_pred EEEEEeCCCcceeeecCC-CCHHHHHHHH
Q 018270 218 TLKFFPKGNKDGEEYGGG-RDLEDFVSFI 245 (358)
Q Consensus 218 ti~~~~~g~~~~~~~~g~-~~~~~l~~~i 245 (358)
|+++|++|+..+..|.|. ++.++|++||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999987788999995 8999999985
No 32
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.3e-19 Score=137.75 Aligned_cols=102 Identities=30% Similarity=0.668 Sum_probs=90.5
Q ss_pred CeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-chhhHh-hcCccCCC
Q 018270 24 DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCS-KYGVQGYP 98 (358)
Q Consensus 24 ~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~-~~~i~~~P 98 (358)
.|.+++.++|+.++ +.+++++|.||++||++|+++.|.|.++++.+++ ..+.++.|||+. +..+|. .++|+++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 57899999999987 3578999999999999999999999999999973 359999999997 578886 49999999
Q ss_pred eEEEccCCCCCcccccCC-CCHHHHHHHH
Q 018270 99 TIQWFPKGSLEPKKYEGP-RSTEALAEYV 126 (358)
Q Consensus 99 ~l~~~~~~~~~~~~~~g~-~~~~~i~~~i 126 (358)
|+++|.+++..+..|.|. ++.++|..||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999887677899995 8999999885
No 33
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.7e-20 Score=142.36 Aligned_cols=105 Identities=30% Similarity=0.539 Sum_probs=96.0
Q ss_pred CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270 23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 101 (358)
..+..++..+|++.+ +++.||+|.|||+||+||+.+.|.+++++..+. +.+.++++|.+++.+++.+|+|..+||++
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEE
Confidence 356777889998877 889999999999999999999999999999997 78999999999999999999999999999
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
+|++|... .++.|..+.+.+.++|....
T Consensus 121 vfknGe~~-d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 121 VFKNGEKV-DRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred EEECCEEe-eeecccCCHHHHHHHHHHHh
Confidence 99988755 78899999999999998754
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.82 E-value=1.6e-19 Score=136.02 Aligned_cols=101 Identities=50% Similarity=0.933 Sum_probs=92.0
Q ss_pred CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
++.++++++|.+.+ +.+++++|.||++||++|+.+.|.|.++++.+. +.+.++.+||+++.+++++|+|.++|++++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 36789999999988 455669999999999999999999999999987 569999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHH
Q 018270 103 FPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 103 ~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
|.+|......|.|.++.+++.+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHHHHHh
Confidence 998865668999999999999997
No 35
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.82 E-value=1.5e-19 Score=136.16 Aligned_cols=101 Identities=51% Similarity=0.883 Sum_probs=93.3
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 222 (358)
+.++++.+|++.+.+.+.+++|.||++||++|+.+.|.|.++++.+. +.+.++.+|++++.+++++|+|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 57889999999987777789999999999999999999999999885 4699999999999999999999999999999
Q ss_pred eCCCcceeeecCCCCHHHHHHHH
Q 018270 223 PKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 223 ~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
++|......|.|+++.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 98866788999999999999996
No 36
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=1.6e-19 Score=135.72 Aligned_cols=100 Identities=48% Similarity=1.023 Sum_probs=89.9
Q ss_pred eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 103 (358)
+..++.++|++.+..+ +++|.||++||++|+.+.|.|.++++.+++ ...+.++.+||+++..+|++|+|.++|++++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 6789999999999655 599999999999999999999999999975 24799999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHH
Q 018270 104 PKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
.+|. ...+|.|.++.+++.+||
T Consensus 81 ~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCC-eeeEeeCCCCHHHHHhhC
Confidence 8776 447899999999998875
No 37
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.81 E-value=1e-19 Score=138.47 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=91.8
Q ss_pred cCCCeEEcChhhHHHHhcC-CCcEEEEEECCCChh--hh--hhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc
Q 018270 21 LADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGH--CK--KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95 (358)
Q Consensus 21 ~~~~v~~l~~~~f~~~~~~-~~~~lv~fya~~c~~--C~--~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 95 (358)
+...+..+|++||++.+.+ +.++++.||+.||++ |+ .+.|.+.++++++-..+.+.|++||+++++++|++|+|.
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 3467899999999998854 557888888888876 99 888999999888722267999999999999999999999
Q ss_pred CCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
++||+++|++|.. ..|.|.++.+.+.+||.+.
T Consensus 87 ~iPTl~lfk~G~~--v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 87 EEDSIYVFKDDEV--IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred cccEEEEEECCEE--EEeeCCCCHHHHHHHHHHH
Confidence 9999999998863 3499999999999999864
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.81 E-value=2e-19 Score=135.96 Aligned_cols=103 Identities=72% Similarity=1.224 Sum_probs=94.4
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHHhcCCCcccEEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~Pti~~ 221 (358)
+.++++.+|++.+.+.+++++|.||++||++|+++.|.|.++++.+...+++.++.+|++. +.+++++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678999999988666779999999999999999999999999999755689999999999 899999999999999999
Q ss_pred EeCCCcceeeecCCCCHHHHHHHH
Q 018270 222 FPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 222 ~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
|.+|+.....|.|.++.++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 998877788899999999999885
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.81 E-value=2e-19 Score=135.75 Aligned_cols=102 Identities=54% Similarity=1.029 Sum_probs=92.6
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 222 (358)
|.++++.+|++.+.+.+++++|.||++||++|+.+.|.|.++++.+....++.++.+|++.+ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 67899999999987777999999999999999999999999999997656899999999987 58889999999999999
Q ss_pred eCCC-cceeeecCCCCHHHHHHHH
Q 018270 223 PKGN-KDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 223 ~~g~-~~~~~~~g~~~~~~l~~~i 245 (358)
++|+ .....|.|..+.++|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9887 3678899999999999985
No 40
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.81 E-value=1.4e-18 Score=146.78 Aligned_cols=110 Identities=35% Similarity=0.714 Sum_probs=96.1
Q ss_pred CCCceEcCcccHHHHHhcC----CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270 140 PSNVVVLTADNFDEIVLDK----SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG 215 (358)
Q Consensus 140 ~~~v~~l~~~~f~~~~~~~----~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~ 215 (358)
++.+.++++.+|++.+... +++++|.||+|||++|+.+.|.|+++++.++ +.+.++.+|++.+++++++|+|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence 5679999999999988543 5799999999999999999999999999986 468999999999999999999999
Q ss_pred ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270 216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252 (358)
Q Consensus 216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (358)
+||+++|++|. ....+.|.++.++|.+|+.+.....
T Consensus 107 ~PTl~~f~~G~-~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKGK-MYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECCE-EEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 99999999873 3344567899999999999887533
No 41
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.81 E-value=3e-19 Score=134.18 Aligned_cols=101 Identities=52% Similarity=1.016 Sum_probs=93.6
Q ss_pred cChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 28 l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
|++++|++.+.++++++|.||++||++|+.+.|.|+++++.+++.+.+.++.+||++++.++++|+|.++|++++|.+++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 57889999999999999999999999999999999999999975447999999999999999999999999999999887
Q ss_pred CCcccccCCCCHHHHHHHHhcc
Q 018270 108 LEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 108 ~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
. +..|.|.++.+++..||.+.
T Consensus 81 ~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 K-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred c-ceeecCCCCHHHHHHHHHhc
Confidence 6 68999999999999999864
No 42
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.80 E-value=2.8e-19 Score=134.41 Aligned_cols=100 Identities=41% Similarity=0.872 Sum_probs=89.4
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
+.++++++|+..+. .+ .++|.||++||++|+.+.|.|.++++.+.. ...+.++.+|++.+..++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~-~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIA-EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhh-cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 56789999999983 33 599999999999999999999999999975 3479999999999999999999999999999
Q ss_pred EeCCCcceeeecCCCCHHHHHHHH
Q 018270 222 FPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 222 ~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
|++|. ...+|.|.++.++|.+||
T Consensus 80 ~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCC-eeeEeeCCCCHHHHHhhC
Confidence 98775 667899999999998885
No 43
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.9e-19 Score=152.10 Aligned_cols=108 Identities=35% Similarity=0.713 Sum_probs=99.5
Q ss_pred CCCeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270 22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (358)
...|.++|+.||.+.+ +..+||+|+||+|||++|+++.|.+++++..++ +.+.+++|||++++.++.+|||+++|
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCC
Confidence 3459999999999987 555699999999999999999999999999998 77999999999999999999999999
Q ss_pred eEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270 99 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT 132 (358)
Q Consensus 99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~ 132 (358)
+++.|.+|... ..|.|....+.+.+|+....+.
T Consensus 100 tV~af~dGqpV-dgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPV-DGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCc-cccCCCCcHHHHHHHHHHhcCh
Confidence 99999999865 8899999999999999987654
No 44
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.80 E-value=4.5e-19 Score=133.24 Aligned_cols=101 Identities=66% Similarity=1.157 Sum_probs=93.0
Q ss_pred cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 225 (358)
Q Consensus 146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 225 (358)
|++++|++.+ ..+++++|.||++||++|+.+.|.|++++..+...+++.++.+|++.+..++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 5678999988 488999999999999999999999999999997655799999999999999999999999999999998
Q ss_pred CcceeeecCCCCHHHHHHHHHHh
Q 018270 226 NKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
+. +..|.|..+.++|..||.++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 75 88999999999999999864
No 45
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.5e-18 Score=147.75 Aligned_cols=108 Identities=31% Similarity=0.636 Sum_probs=98.3
Q ss_pred CCceEcCcccHHHHHhc--CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270 141 SNVVVLTADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218 (358)
Q Consensus 141 ~~v~~l~~~~f~~~~~~--~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 218 (358)
..++++|..||++.+.. ...||+|+||+|||+||+++.|.+++++..++ +.+.+++||||.++.++.+|||+++||
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCCe
Confidence 34899999999998853 34599999999999999999999999999996 789999999999999999999999999
Q ss_pred EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270 219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 251 (358)
Q Consensus 219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (358)
++.|.+|. .+.-|.|....+.+..|+.++.+.
T Consensus 101 V~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence 99999995 456789999999999999998876
No 46
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=3.8e-19 Score=132.49 Aligned_cols=89 Identities=28% Similarity=0.543 Sum_probs=79.3
Q ss_pred HHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcCccCCCeEEEccCCCCC
Q 018270 33 FEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 33 f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
+.+++ .++++++|.|||+||++|+.+.|.|+++++.++ .+.++.||++ +.+.++++|+|.++||+++|++| .
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~ 83 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--P 83 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--c
Confidence 44444 578999999999999999999999999999985 4778899998 78999999999999999999887 4
Q ss_pred cccccCCCCHHHHHHHH
Q 018270 110 PKKYEGPRSTEALAEYV 126 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~i 126 (358)
..+|.|.++.+++.+|+
T Consensus 84 ~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred eeEecCCCCHHHHHhhC
Confidence 58999999999999985
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.80 E-value=7.4e-19 Score=132.82 Aligned_cols=102 Identities=62% Similarity=1.127 Sum_probs=92.4
Q ss_pred eEEcChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-chhhHhhcCccCCCeEEE
Q 018270 25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 25 v~~l~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P~l~~ 102 (358)
+.++++++|++.+. .+++++|.||++||++|+++.|.|.++++.++..+.+.++.+||++ ++++|++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 57889999999885 4559999999999999999999999999998754679999999999 999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHH
Q 018270 103 FPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 103 ~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
|.+++.....|.|.++.+++.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 998866668899999999999885
No 48
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.80 E-value=6.3e-19 Score=132.96 Aligned_cols=102 Identities=42% Similarity=0.903 Sum_probs=92.2
Q ss_pred CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEE
Q 018270 24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~ 101 (358)
++..+++.+|++.++++++++|.||++||++|+.+.|.+.++++.+...+.+.++.+||+. +..++++++|.++|+++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 3678899999999988899999999999999999999999999988754568999999998 89999999999999999
Q ss_pred EccCCCCCcccccCCCCHHHHHHHH
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
+|++|. ....|.|..+.+++.+|+
T Consensus 81 ~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 998775 457899999999999885
No 49
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.79 E-value=4e-19 Score=132.33 Aligned_cols=84 Identities=26% Similarity=0.616 Sum_probs=77.7
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~ 235 (358)
.++++++|.|||+||++|+.+.|.|+++++.+. ++.++.+|.+ .+++++++|+|.++||+++|++| ...+|.|.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~ 90 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGT 90 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCC
Confidence 578999999999999999999999999999984 4788999998 78999999999999999999987 67899999
Q ss_pred CCHHHHHHHH
Q 018270 236 RDLEDFVSFI 245 (358)
Q Consensus 236 ~~~~~l~~~i 245 (358)
++.+.|.+||
T Consensus 91 ~~~~~l~~f~ 100 (100)
T cd02999 91 RTLDSLAAFY 100 (100)
T ss_pred CCHHHHHhhC
Confidence 9999999985
No 50
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.79 E-value=8.4e-19 Score=132.27 Aligned_cols=101 Identities=47% Similarity=0.914 Sum_probs=90.2
Q ss_pred eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270 25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 103 (358)
|..++.++|++.+ +.+++++|.||++||++|+.+.|.|.++++.+++...+.++.+||+++ +++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 6789999999988 445899999999999999999999999999997545799999999987 58889999999999999
Q ss_pred cCCC-CCcccccCCCCHHHHHHHH
Q 018270 104 PKGS-LEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 104 ~~~~-~~~~~~~g~~~~~~i~~~i 126 (358)
.+|+ .....|.|.++.+++.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 8887 4457899999999999886
No 51
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=5.1e-19 Score=134.68 Aligned_cols=101 Identities=19% Similarity=0.379 Sum_probs=88.7
Q ss_pred EEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 26 VVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 26 ~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
..++.++|.+.+ ..+++++|.||++||++|+.+.|.|+++++.+++ ..+.++.|||++++.++++++|.++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 456788897654 3689999999999999999999999999999974 258999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHhc
Q 018270 103 FPKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 103 ~~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
|++|. ....+.|..+.+.+.+||++
T Consensus 86 ~~~g~-~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQ-VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCE-EEEEecCCCCHHHHHHHHhc
Confidence 98764 44677899999999999975
No 52
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=1.5e-18 Score=132.00 Aligned_cols=107 Identities=33% Similarity=0.661 Sum_probs=95.8
Q ss_pred CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219 (358)
Q Consensus 140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti 219 (358)
.+.++++++.+|.+.+.+.+++++|.||++||++|+.+.|.++++++.+. +++.++.+|++.++.++++|+|.++||+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 45688899999998776778999999999999999999999999999985 4689999999999999999999999999
Q ss_pred EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270 220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 249 (358)
++|++| +....+.|..+.+++.+||.+++
T Consensus 80 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 999877 45667889999999999998754
No 53
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=9e-19 Score=133.32 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=87.4
Q ss_pred cCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEe
Q 018270 146 LTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 223 (358)
Q Consensus 146 l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~ 223 (358)
++..+|++.+. +.+++++|.||+|||++|+.+.|.|.++++.+.+ .++.++.||++.++.++++++|.++||+++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 56677876553 3678999999999999999999999999999963 36899999999999999999999999999998
Q ss_pred CCCcceeeecCCCCHHHHHHHHHH
Q 018270 224 KGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 224 ~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
+| +....+.|..+.+.|.+||++
T Consensus 88 ~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NG-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CC-EEEEEecCCCCHHHHHHHHhc
Confidence 77 456677899999999999975
No 54
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.78 E-value=1.3e-18 Score=129.26 Aligned_cols=93 Identities=27% Similarity=0.606 Sum_probs=82.6
Q ss_pred hHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270 32 NFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 32 ~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
+|++.+ +++++++|+||++||++|+.+.|.+.+++..+. +.+.++.+|++++++++++|+|.++|++++|.+|. .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-P 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-E
Confidence 577777 336799999999999999999999999999987 46899999999999999999999999999998654 4
Q ss_pred cccccCCCCHHHHHHHHh
Q 018270 110 PKKYEGPRSTEALAEYVN 127 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~i~ 127 (358)
...+.|..+.+++.+|+.
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 468999999999999874
No 55
>PRK09381 trxA thioredoxin; Provisional
Probab=99.78 E-value=1.8e-18 Score=131.58 Aligned_cols=106 Identities=30% Similarity=0.680 Sum_probs=94.3
Q ss_pred CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270 22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI 100 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l 100 (358)
.+.+.+++.++|.+.+ +.+++++|+||++||++|+.+.|.|+++++.+. +.+.++.+|++..+.++++|+|.++|++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 4678899999999755 668899999999999999999999999999987 4699999999999999999999999999
Q ss_pred EEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270 101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
++|.+|. ...++.|..+.+.+..+++..+
T Consensus 80 ~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGE-VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence 9997765 4467889999999999998653
No 56
>PHA02278 thioredoxin-like protein
Probab=99.78 E-value=1.1e-18 Score=129.80 Aligned_cols=94 Identities=19% Similarity=0.290 Sum_probs=81.9
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----hhhHhhcCccCCCeEEEcc
Q 018270 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFP 104 (358)
Q Consensus 29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~l~~~~ 104 (358)
+.++|.+.++++++++|+|||+||++|+.+.|.++++++.+. ..+.++.+|++++ .+++++|+|.++||+++|+
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 357888999889999999999999999999999999998754 4467899999976 6899999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHH
Q 018270 105 KGSLEPKKYEGPRSTEALAEY 125 (358)
Q Consensus 105 ~~~~~~~~~~g~~~~~~i~~~ 125 (358)
+|... .+..|..+.+.+.++
T Consensus 81 ~G~~v-~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLV-KKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEE-EEEeCCCCHHHHHhh
Confidence 87644 788898888888775
No 57
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=2.1e-18 Score=130.09 Aligned_cols=101 Identities=45% Similarity=0.863 Sum_probs=90.7
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~ 220 (358)
+..+++.+|+..+ ..+++++|.||++||++|+.+.|.+.++++.+...+.+.++.+|++. +..++++|+|.++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678899999988 56679999999999999999999999999998755678999999998 89999999999999999
Q ss_pred EEeCCCcceeeecCCCCHHHHHHHH
Q 018270 221 FFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 221 ~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
+|++|. ....|.|..+.+.+.+||
T Consensus 81 ~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 999874 577899999999999885
No 58
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.78 E-value=3e-18 Score=127.28 Aligned_cols=94 Identities=26% Similarity=0.573 Sum_probs=83.7
Q ss_pred ccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270 149 DNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227 (358)
Q Consensus 149 ~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 227 (358)
++|++.+.+. +++++|.||++||++|+.+.|.+.+++..+. +.+.++.+|++.+..++++|+|.++||+++|++| +
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~ 77 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-Q 77 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-E
Confidence 3677777544 6899999999999999999999999999985 4689999999999999999999999999999866 4
Q ss_pred ceeeecCCCCHHHHHHHH
Q 018270 228 DGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i 245 (358)
....+.|..+.++|..||
T Consensus 78 ~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 78 PVDGFQGAQPEEQLRQML 95 (96)
T ss_pred EeeeecCCCCHHHHHHHh
Confidence 566799999999999987
No 59
>PHA02278 thioredoxin-like protein
Probab=99.77 E-value=2.5e-18 Score=127.90 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=80.0
Q ss_pred cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCCCcccEEEEEe
Q 018270 148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFP 223 (358)
Q Consensus 148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~Pti~~~~ 223 (358)
..+|.+.+ ..+++++|.|||+||+||+.+.|.++++++.+. .++.++.+|++.+ ++++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 46788877 678999999999999999999999999998753 3466888888865 6899999999999999999
Q ss_pred CCCcceeeecCCCCHHHHHHH
Q 018270 224 KGNKDGEEYGGGRDLEDFVSF 244 (358)
Q Consensus 224 ~g~~~~~~~~g~~~~~~l~~~ 244 (358)
+| +...+..|..+.+.+.++
T Consensus 81 ~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CC-EEEEEEeCCCCHHHHHhh
Confidence 88 466788898888888776
No 60
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.77 E-value=1.4e-18 Score=129.98 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=72.8
Q ss_pred cccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270 148 ADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 226 (358)
Q Consensus 148 ~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 226 (358)
.++|++.+.. .+++++|.|||+||+||+.+.|.+++++..+. +.+.|++||++++++++++|+|.++||+++|++|.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 4567777743 57899999999999999999999999999985 45789999999999999999999999999999885
Q ss_pred cceeeecCC
Q 018270 227 KDGEEYGGG 235 (358)
Q Consensus 227 ~~~~~~~g~ 235 (358)
......|.
T Consensus 80 -~v~~~~G~ 87 (114)
T cd02954 80 -HMKIDLGT 87 (114)
T ss_pred -EEEEEcCC
Confidence 44455553
No 61
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=3.5e-18 Score=127.84 Aligned_cols=100 Identities=59% Similarity=1.151 Sum_probs=91.1
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106 (358)
Q Consensus 27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~ 106 (358)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.++..+.+.++.+||+++..++++|+|.++|++++|.++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 57889999999888899999999999999999999999999984336799999999999999999999999999999988
Q ss_pred CCCcccccCCCCHHHHHHHH
Q 018270 107 SLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 107 ~~~~~~~~g~~~~~~i~~~i 126 (358)
+....+|.|..+.+++.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 55668999999999998875
No 62
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=3.1e-18 Score=135.54 Aligned_cols=105 Identities=25% Similarity=0.578 Sum_probs=95.1
Q ss_pred CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 101 (358)
...+.+++.++|++.++++++++|+||++||++|+.+.|.|.++++.+. +.+.++.+|++++++++++|+|.++|+++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 4457789999999999889999999999999999999999999999886 56999999999999999999999999999
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
+|++|. ....+.|..+.+.+.+|+++.
T Consensus 112 i~~~G~-~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 112 IFKNGQ-VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence 998665 447889999999999999864
No 63
>PTZ00062 glutaredoxin; Provisional
Probab=99.76 E-value=1.6e-17 Score=138.12 Aligned_cols=161 Identities=13% Similarity=0.198 Sum_probs=115.7
Q ss_pred ChhhHHHHhcCC-CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 29 ~~~~f~~~~~~~-~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
+.++|.+.++++ ..++++|+|+||++|+.+.|.+.++++.+ +.+.|+.||.+ |+|.++|++++|++|.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC---CCcEEEEEccc--------cCcccceEEEEEECCE
Confidence 467888888654 77899999999999999999999999998 56999999977 9999999999999887
Q ss_pred CCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEE----cCCCCcccchhhhhHHH
Q 018270 108 LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEF----YAPWCGHCKNLAPTYEK 183 (358)
Q Consensus 108 ~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f----~a~~C~~c~~~~~~~~~ 183 (358)
.. .++.|. ++..+..++....+..... ....-.++++ .+.+|+|.- +.|||++|++....+.+
T Consensus 74 ~i-~r~~G~-~~~~~~~~~~~~~~~~~~~---------~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~ 140 (204)
T PTZ00062 74 LI-NSLEGC-NTSTLVSFIRGWAQKGSSE---------DTVEKIERLI--RNHKILLFMKGSKTFPFCRFSNAVVNMLNS 140 (204)
T ss_pred EE-eeeeCC-CHHHHHHHHHHHcCCCCHH---------HHHHHHHHHH--hcCCEEEEEccCCCCCCChhHHHHHHHHHH
Confidence 44 677764 5899999998776532210 1123344444 334444433 34799999998877775
Q ss_pred HHHHhcCCCCeEEEEEeCcccHH----HHHhcCCCcccEEEE
Q 018270 184 VAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKF 221 (358)
Q Consensus 184 la~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pti~~ 221 (358)
. ++.+..+|++++++ +.+..|...+|.+++
T Consensus 141 ~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 141 S--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred c--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 4 24455666665543 333446667887553
No 64
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6.8e-17 Score=148.13 Aligned_cols=300 Identities=21% Similarity=0.416 Sum_probs=174.9
Q ss_pred CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCc--cchhhHhhcCccCC
Q 018270 22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD--EHKSLCSKYGVQGY 97 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~ 97 (358)
.+.|..|+.++|...+ .+.+..+|+||++|||||+.++|+|.++++.+..= +-+.++.|||- ++..+|++|+|.+|
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 4679999999999999 44458999999999999999999999999887632 46889999996 56889999999999
Q ss_pred CeEEEccCCCCC---cccccCCCCHHHHHHHHhccC------CCCccccCCCCCceEcCcccHHHHH---hcCCCcEEEE
Q 018270 98 PTIQWFPKGSLE---PKKYEGPRSTEALAEYVNNEG------GTNVKIAAVPSNVVVLTADNFDEIV---LDKSKDVLVE 165 (358)
Q Consensus 98 P~l~~~~~~~~~---~~~~~g~~~~~~i~~~i~~~~------~~~~~~~~~~~~v~~l~~~~f~~~~---~~~~~~v~v~ 165 (358)
|++++|.++... ...+.|.....++.+.+.... +..+. .|..-...+..+..++. .+....+.+.
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~---WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv 194 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPS---WPNFDPLKDTTTLEELDEGISTTANYVAIV 194 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcchHHHHhcccccccceeEEE
Confidence 999999876432 234556555666666554311 11111 11111111122222222 1233456666
Q ss_pred Ec-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHH
Q 018270 166 FY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 244 (358)
Q Consensus 166 f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~ 244 (358)
|- .+. .-.+..+-.... .+++.+..+-.++.-.+.+ ++++..|+..+|++|...+. +....+.+...+.
T Consensus 195 ~e~~~s-------~lg~~~~l~~l~-~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l-~~~~~s~~~y~~~ 264 (606)
T KOG1731|consen 195 FETEPS-------DLGWANLLNDLP-SKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPL-WPSSSSRSAYVKK 264 (606)
T ss_pred EecCCc-------ccHHHHHHhhcc-CCCcceEEEecchhccccc-cCCCCchhhhhhcCCccccc-ccccccHHHHHHH
Confidence 63 221 123333333332 2345454444444444555 88999999999999965443 3444556688888
Q ss_pred HHHhcCCCCCCCCCcccccc---chhhHHHH---HH-H-HHhcc--hhh-HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Q 018270 245 INEKCGTSRDGKGQLTSTAG---IVASLDAL---VK-E-FVAAS--GDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVA 313 (358)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~-~-f~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 313 (358)
|.+.+|......+....... .-+.+|.. +. . |+... .+. +-.+..++-.. ..+.+......+.+++++
T Consensus 265 I~~~lg~~~~a~~pt~~p~~~~~~~~~Id~~~~~l~~~~~V~~aDLeqAm~~~L~~Ev~R~-~~i~g~~l~aLk~f~~ll 343 (606)
T KOG1731|consen 265 IDDLLGDKNEASGPTLHPITATTAAPTIDAPSEVLNNQYFVYEADLEQAMSYILHIEVPRT-ALIRGENLAALKEFMHLL 343 (606)
T ss_pred HHHHhcCccccCCCCcCcccccccchhhhcchhhcCccceehHhhHHHHHHHHHHHhhcch-hhccCchHHHHHHHHHHH
Confidence 88888776554432111111 11122221 10 0 11111 111 11222222222 334555556677888888
Q ss_pred HHHhhcCCchHHHHHHHHHHHHh
Q 018270 314 KNYMDKGSDYAKKEIDRLQRMLD 336 (358)
Q Consensus 314 ~k~~~~~~~~~~~e~~rl~~~l~ 336 (358)
.+. -.|.....+=..+|++-+.
T Consensus 344 ~r~-~P~~~~~~~l~~~Ld~~~~ 365 (606)
T KOG1731|consen 344 RRY-FPGTADGRRLVNSLDNSLS 365 (606)
T ss_pred HHh-CCCChhHHHHHHHHhhhhh
Confidence 887 4455555555555555544
No 65
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.76 E-value=1.8e-18 Score=129.45 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=74.6
Q ss_pred hhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 30 EDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 30 ~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
.++|++.+. .+++++|.|||+||++|+.+.|.+++++++++ +.+.|++||++++++++.+|+|.++||+++|++|.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 467888884 57899999999999999999999999999986 55899999999999999999999999999999886
Q ss_pred CCcccccCCCC
Q 018270 108 LEPKKYEGPRS 118 (358)
Q Consensus 108 ~~~~~~~g~~~ 118 (358)
.. ....|..+
T Consensus 80 ~v-~~~~G~~~ 89 (114)
T cd02954 80 HM-KIDLGTGN 89 (114)
T ss_pred EE-EEEcCCCC
Confidence 44 55555443
No 66
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.76 E-value=6e-18 Score=134.52 Aligned_cols=92 Identities=24% Similarity=0.492 Sum_probs=80.3
Q ss_pred CCCeEEcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC---
Q 018270 22 ADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG--- 96 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--- 96 (358)
...+.+++.++|++.+. .+++++|+||++||++|+.+.|.|+++++.+++ .++.++.||++++++++++|+|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 45789999999999883 457899999999999999999999999999863 359999999999999999999988
Q ss_pred ---CCeEEEccCCCCCcccccC
Q 018270 97 ---YPTIQWFPKGSLEPKKYEG 115 (358)
Q Consensus 97 ---~P~l~~~~~~~~~~~~~~g 115 (358)
+||+++|++|... .++.|
T Consensus 106 v~~~PT~ilf~~Gk~v-~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGGKEV-ARRPY 126 (152)
T ss_pred cCCCCEEEEEECCEEE-EEEec
Confidence 9999999877643 56655
No 67
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=1.3e-17 Score=132.08 Aligned_cols=105 Identities=28% Similarity=0.644 Sum_probs=94.1
Q ss_pred CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219 (358)
Q Consensus 140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti 219 (358)
...+..++..+|+..+ +.+++++|.||++||++|+.+.|.+.++++.+. +++.++.+|++++++++++|+|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 4457778999999987 678999999999999999999999999999875 4699999999999999999999999999
Q ss_pred EEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 220 KFFPKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
++|++| +....+.|..+.+.|.+|+++.
T Consensus 111 ii~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 999876 4567789999999999999864
No 68
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.75 E-value=8.1e-18 Score=126.74 Aligned_cols=96 Identities=41% Similarity=0.812 Sum_probs=84.5
Q ss_pred ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270 149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227 (358)
Q Consensus 149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 227 (358)
++|++.. .++.++|.||++||++|+.+.|.|+++++.++.. .++.++.+|++..++++++|+|.++||+++|.+|
T Consensus 7 ~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-- 82 (104)
T cd03000 7 DSFKDVR--KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-- 82 (104)
T ss_pred hhhhhhc--cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence 6777743 5779999999999999999999999999998643 3599999999999999999999999999999755
Q ss_pred ceeeecCCCCHHHHHHHHHHh
Q 018270 228 DGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i~~~ 248 (358)
....|.|.++.++|.+|+++.
T Consensus 83 ~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CceeecCCCCHHHHHHHHHhh
Confidence 457799999999999999864
No 69
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.75 E-value=1.1e-17 Score=125.48 Aligned_cols=95 Identities=21% Similarity=0.375 Sum_probs=78.9
Q ss_pred CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH---HHHHhcCCCcccEEEEE
Q 018270 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFF 222 (358)
Q Consensus 147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~Pti~~~ 222 (358)
+.++|++.+.+ .+++++|.|||+||++|+.+.|.+.++++.+ +++.|+.||++++. +++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 34678888753 3789999999999999999999999999998 46899999998764 89999999999999999
Q ss_pred eCCCcceeeecCCCCHHHHHHHHH
Q 018270 223 PKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 223 ~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
++|. ...++.| ...+.|.+-+.
T Consensus 79 ~~G~-~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 79 KDGE-KIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred eCCe-EEEEEeC-CCHHHHHHHHH
Confidence 8774 5677777 45566666554
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.75 E-value=1.1e-17 Score=125.31 Aligned_cols=98 Identities=17% Similarity=0.434 Sum_probs=84.5
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106 (358)
Q Consensus 27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~ 106 (358)
.-|.++|.++++++++++|+|||+||++|+.+.|.+.++++.+++ ..+.++.+|++ +.+++++|+|.++||+++|++|
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 347889999998899999999999999999999999999998863 34889999999 7889999999999999999876
Q ss_pred CCCcccccCCCCHHHHHHHHhc
Q 018270 107 SLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 107 ~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
... .+..| .+.+.+.++|.+
T Consensus 82 ~~~-~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELV-AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE-EEEec-CChHHHHHHHhh
Confidence 533 56666 488889888864
No 71
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.75 E-value=2.4e-17 Score=122.47 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=86.0
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCC--CcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~--C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~ 220 (358)
..+++..||++.+ ..+..++|.||++| |++|+.+.|.++++++.+. +.+.|+++|+++++.++.+|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 3468999999988 78899999999997 9999999999999999985 56889999999999999999999999999
Q ss_pred EEeCCCcceeeecCCCCHHHHH
Q 018270 221 FFPKGNKDGEEYGGGRDLEDFV 242 (358)
Q Consensus 221 ~~~~g~~~~~~~~g~~~~~~l~ 242 (358)
+|++| +....+.|..+.+++.
T Consensus 89 ~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECC-EEEEEEeCccCHHHHh
Confidence 99998 4566778988888775
No 72
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.74 E-value=9e-18 Score=125.62 Aligned_cols=100 Identities=58% Similarity=1.052 Sum_probs=90.2
Q ss_pred EcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270 145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 224 (358)
Q Consensus 145 ~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~ 224 (358)
+++.++|.+.+ .++++++|.||++||++|+.+.|.|.++++.++....+.++.+|++.+..++++|+|.++||+++|++
T Consensus 2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 47788999988 45559999999999999999999999999998645689999999999999999999999999999998
Q ss_pred CCcceeeecCCCCHHHHHHHH
Q 018270 225 GNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 225 g~~~~~~~~g~~~~~~l~~~i 245 (358)
++....+|.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 867788899999999998874
No 73
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.74 E-value=1.5e-17 Score=125.34 Aligned_cols=95 Identities=41% Similarity=0.875 Sum_probs=83.8
Q ss_pred hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270 31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
++|++. .++++++|.||++||++|+.+.|.|+++++.+++. ..+.++.+||++.+.++++|+|.++|++++|.++ .
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~--~ 83 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD--L 83 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--C
Confidence 778875 45789999999999999999999999999998642 3599999999999999999999999999999655 3
Q ss_pred cccccCCCCHHHHHHHHhc
Q 018270 110 PKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~i~~ 128 (358)
...|.|.++.+.+.+|+++
T Consensus 84 ~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ceeecCCCCHHHHHHHHHh
Confidence 3679999999999999975
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.73 E-value=2.2e-17 Score=124.40 Aligned_cols=95 Identities=25% Similarity=0.487 Sum_probs=84.0
Q ss_pred hhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCcc----chhhHhhcCccCCCeEEEc
Q 018270 31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~~ 103 (358)
++|.++++++++++|.||++||++|+.+.|.+ .++++.++ +.+.++.+|+++ ..+++++|+|.++|++++|
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 56888888999999999999999999999988 67888886 379999999987 5789999999999999999
Q ss_pred cC-CCCCcccccCCCCHHHHHHHHh
Q 018270 104 PK-GSLEPKKYEGPRSTEALAEYVN 127 (358)
Q Consensus 104 ~~-~~~~~~~~~g~~~~~~i~~~i~ 127 (358)
++ ++..+.++.|..+.+++.++|.
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHhC
Confidence 86 5666688999999999998873
No 75
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.73 E-value=3.1e-17 Score=122.93 Aligned_cols=97 Identities=23% Similarity=0.441 Sum_probs=82.3
Q ss_pred cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 225 (358)
Q Consensus 146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 225 (358)
-+.++|+.++ +.+++++|.|||+||++|+.+.|.+++++..+. ...+.|+.+|++ +.+++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~-~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG-DDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC-CCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 3678899987 678899999999999999999999999999986 235789999999 7789999999999999999977
Q ss_pred CcceeeecCCCCHHHHHHHHHH
Q 018270 226 NKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
. ...+..| .+.+.+.++|.+
T Consensus 82 ~-~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 E-LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred E-EEEEEec-CChHHHHHHHhh
Confidence 4 4445555 488888888864
No 76
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=2.8e-17 Score=125.48 Aligned_cols=100 Identities=40% Similarity=0.780 Sum_probs=83.0
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCc--ccHHHHHhcCCCcccE
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD--KYKDLAEKYGVSGFPT 218 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~--~~~~l~~~~~v~~~Pt 218 (358)
.+.+++..+|++.+.+.+++++|.||++||++|+.+.|.|+++++.++.. +.+.++.+||+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 47889999999999777789999999999999999999999999998643 35899999986 4678999999999999
Q ss_pred EEEEeCCCcc---eeeecCC-CCHHHH
Q 018270 219 LKFFPKGNKD---GEEYGGG-RDLEDF 241 (358)
Q Consensus 219 i~~~~~g~~~---~~~~~g~-~~~~~l 241 (358)
+++|++|.+. ...|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999988652 2355555 544444
No 77
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.73 E-value=2e-17 Score=124.18 Aligned_cols=95 Identities=21% Similarity=0.352 Sum_probs=79.9
Q ss_pred ChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch---hhHhhcCccCCCeEEEc
Q 018270 29 TEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK---SLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 29 ~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~~ 103 (358)
|.++|++.++ ++++++|+|||+||++|+.+.|.++++++.+ +.+.|+.||++++. +++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 4678888884 3899999999999999999999999999988 45899999999874 89999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHhc
Q 018270 104 PKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
++|. ...++.| ...+++.+.+..
T Consensus 79 ~~G~-~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGE-KIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred eCCe-EEEEEeC-CCHHHHHHHHHh
Confidence 7765 4478888 556777766543
No 78
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.73 E-value=2.4e-17 Score=152.76 Aligned_cols=108 Identities=31% Similarity=0.616 Sum_probs=93.9
Q ss_pred CCCCceEcCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-HHH-HhcCCC
Q 018270 139 VPSNVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLA-EKYGVS 214 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-~l~-~~~~v~ 214 (358)
..+.|++|+..||++++. +.+++++|.||||||++|+.+.|.|+++|+.++. .++.|+.||++.+. .++ ++|+|.
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~-~~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCccHHHHHHcCCC
Confidence 456799999999999983 4788999999999999999999999999999963 24889999998653 444 689999
Q ss_pred cccEEEEEeCCCcceeeec-CCCCHHHHHHHHHH
Q 018270 215 GFPTLKFFPKGNKDGEEYG-GGRDLEDFVSFINE 247 (358)
Q Consensus 215 ~~Pti~~~~~g~~~~~~~~-g~~~~~~l~~~i~~ 247 (358)
++||+++|++|+..+..|. |.++.++|+.||+.
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 9999999999977788897 57999999999985
No 79
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=3.2e-17 Score=151.97 Aligned_cols=109 Identities=31% Similarity=0.641 Sum_probs=96.8
Q ss_pred CCCCceEcCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHH-hcCCC
Q 018270 139 VPSNVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAE-KYGVS 214 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~-~~~v~ 214 (358)
....++.++.++|++++. +.+++++|.||+|||++|+.+.|.|+++++.+.. .++.|+++|++ .+.+++. +|+|.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCc
Confidence 345789999999999873 5788999999999999999999999999999863 36999999999 7788886 69999
Q ss_pred cccEEEEEeCCCcceeeecC-CCCHHHHHHHHHHh
Q 018270 215 GFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEK 248 (358)
Q Consensus 215 ~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 248 (358)
++||+++|++|...+..|.| .++.+.|++||+..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999999878889985 69999999999863
No 80
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=8.2e-17 Score=122.92 Aligned_cols=102 Identities=44% Similarity=0.867 Sum_probs=84.0
Q ss_pred CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCc--cchhhHhhcCccCCCe
Q 018270 24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD--EHKSLCSKYGVQGYPT 99 (358)
Q Consensus 24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~P~ 99 (358)
.+.+++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.+++. +.+.++.+||+ .+.++|++|+|.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57899999999998 44569999999999999999999999999988643 35899999986 4678999999999999
Q ss_pred EEEccCCCCC---cccccCC-CCHHHHHHH
Q 018270 100 IQWFPKGSLE---PKKYEGP-RSTEALAEY 125 (358)
Q Consensus 100 l~~~~~~~~~---~~~~~g~-~~~~~i~~~ 125 (358)
+++|+++... ...|+|. +..+++.+.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 9999888633 2456665 666666543
No 81
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.72 E-value=4.2e-18 Score=143.91 Aligned_cols=106 Identities=40% Similarity=0.737 Sum_probs=96.3
Q ss_pred cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC---CCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222 (358)
Q Consensus 146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 222 (358)
++..|++.++ +....|+|.|||+||+..+.++|.|+++|..++. ++++++++|||+.+..++.+|.|..|||+.+|
T Consensus 1 lt~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 1 LTSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred CccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 3567888888 6789999999999999999999999999998753 36899999999999999999999999999999
Q ss_pred eCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270 223 PKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252 (358)
Q Consensus 223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (358)
.+|.-....|.|.|+.+.|.+||+++..+.
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccH
Confidence 999766678999999999999999987765
No 82
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=7.1e-17 Score=128.37 Aligned_cols=94 Identities=26% Similarity=0.549 Sum_probs=81.2
Q ss_pred CCCCceEcCcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--
Q 018270 139 VPSNVVVLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG-- 215 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-- 215 (358)
.+..+.+++.++|++.+. +.+++++|.||++||++|+.+.|.++++++.+.. .++.|+.||++++++++++|+|.+
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecC
Confidence 357789999999999874 3457899999999999999999999999999852 469999999999999999999988
Q ss_pred ----ccEEEEEeCCCcceeeecC
Q 018270 216 ----FPTLKFFPKGNKDGEEYGG 234 (358)
Q Consensus 216 ----~Pti~~~~~g~~~~~~~~g 234 (358)
+||+++|++|. ...++.|
T Consensus 105 ~v~~~PT~ilf~~Gk-~v~r~~G 126 (152)
T cd02962 105 LSKQLPTIILFQGGK-EVARRPY 126 (152)
T ss_pred CcCCCCEEEEEECCE-EEEEEec
Confidence 99999999874 4555554
No 83
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.71 E-value=3.7e-17 Score=121.44 Aligned_cols=99 Identities=12% Similarity=0.158 Sum_probs=89.0
Q ss_pred CCCeEEcChhhHHHHhcCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 99 (358)
...+-.+|..||++.++.+.+++|.||++| ||+|+.+.|.+++++++++ +.+.++.+|++++++++.+|+|.++||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 9 RHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred hcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 356788999999999988899999999997 9999999999999999997 568999999999999999999999999
Q ss_pred EEEccCCCCCcccccCCCCHHHHH
Q 018270 100 IQWFPKGSLEPKKYEGPRSTEALA 123 (358)
Q Consensus 100 l~~~~~~~~~~~~~~g~~~~~~i~ 123 (358)
+++|++|... ....|..+.+++.
T Consensus 87 li~fkdGk~v-~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYV-GVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEE-EEEeCccCHHHHh
Confidence 9999988644 6778988877664
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.71 E-value=1.9e-17 Score=158.37 Aligned_cols=111 Identities=49% Similarity=0.925 Sum_probs=99.4
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti~ 220 (358)
.+..++.++|++.+ ..+++++|.|||+||++|+.+.|.|.++++.+... .++.++.|||+.+.++|++|+|.++||++
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 47789999999998 67789999999999999999999999999988643 46999999999999999999999999999
Q ss_pred EEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270 221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 253 (358)
Q Consensus 221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (358)
+|++|+.....|.|.++.+.|.+|+++.++...
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 999885436889999999999999999876543
No 85
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.71 E-value=6.4e-17 Score=149.98 Aligned_cols=106 Identities=29% Similarity=0.600 Sum_probs=93.0
Q ss_pred CCCeEEcChhhHHHHhc---CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-hhH-hhcCccC
Q 018270 22 ADDVVVLTEDNFEKEVG---QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SLC-SKYGVQG 96 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~---~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i~~ 96 (358)
...|..||.+||++.++ .+++++|.|||+||++|+.+.|.|+++++.+.+. .+.|+.|||+.+. .++ ++|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 45799999999999884 7889999999999999999999999999998742 4889999999764 455 7899999
Q ss_pred CCeEEEccCCCCCccccc-CCCCHHHHHHHHhc
Q 018270 97 YPTIQWFPKGSLEPKKYE-GPRSTEALAEYVNN 128 (358)
Q Consensus 97 ~P~l~~~~~~~~~~~~~~-g~~~~~~i~~~i~~ 128 (358)
+||+++|++|...+..|. |.++.++|..|++.
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999876668897 58999999999975
No 86
>PLN02309 5'-adenylylsulfate reductase
Probab=99.71 E-value=6.7e-17 Score=149.84 Aligned_cols=107 Identities=31% Similarity=0.626 Sum_probs=95.2
Q ss_pred CCCeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHh-hcCccC
Q 018270 22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCS-KYGVQG 96 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i~~ 96 (358)
...|..++.++|++.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ ..+.|+.+||+ .+.++|. +|+|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCce
Confidence 3478999999999987 5789999999999999999999999999999874 35999999999 7788986 699999
Q ss_pred CCeEEEccCCCCCcccccC-CCCHHHHHHHHhcc
Q 018270 97 YPTIQWFPKGSLEPKKYEG-PRSTEALAEYVNNE 129 (358)
Q Consensus 97 ~P~l~~~~~~~~~~~~~~g-~~~~~~i~~~i~~~ 129 (358)
+||+++|.+|...+..|.| .++.++|..|++..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999988766788975 79999999999753
No 87
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=9.4e-17 Score=120.25 Aligned_cols=99 Identities=34% Similarity=0.728 Sum_probs=87.2
Q ss_pred cChhhHHHHhcC-CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270 28 LTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106 (358)
Q Consensus 28 l~~~~f~~~~~~-~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~ 106 (358)
++.++|.+.++. +++++|+||++||++|+.+.|.+.++++.++ +.+.++.+|+++++.++++|+|.++|++++|.+|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 356788888854 5699999999999999999999999998886 5699999999999999999999999999999766
Q ss_pred CCCcccccCCCCHHHHHHHHhcc
Q 018270 107 SLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 107 ~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
.. ...+.|..+.+.+.+|+++.
T Consensus 79 ~~-~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KE-VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cE-eeeecCCCCHHHHHHHHHhh
Confidence 53 46788999999999999764
No 88
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=1.3e-16 Score=119.45 Aligned_cols=100 Identities=38% Similarity=0.731 Sum_probs=88.4
Q ss_pred cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 225 (358)
Q Consensus 146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 225 (358)
++.++|.+.+.+.+++++|.||++||++|+.+.|.++++++.+. +++.++.+|++.+..++++|+|.++|++++|++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 35678888886667799999999999999999999999998884 4699999999999999999999999999999877
Q ss_pred CcceeeecCCCCHHHHHHHHHHh
Q 018270 226 NKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
. ....+.|..+.+++.+||++.
T Consensus 79 ~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 K-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred c-EeeeecCCCCHHHHHHHHHhh
Confidence 4 456778999999999999864
No 89
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=140.54 Aligned_cols=94 Identities=32% Similarity=0.761 Sum_probs=84.9
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCC-CeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 236 (358)
....++|.||||||+||+.+.|+|.+++..++..+ .+.++++||+..+.++.+|||++|||+.+|++| ..+.|.|++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~R 119 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGGR 119 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCCc
Confidence 55789999999999999999999999999886443 689999999999999999999999999999977 789999999
Q ss_pred CHHHHHHHHHHhcCCCC
Q 018270 237 DLEDFVSFINEKCGTSR 253 (358)
Q Consensus 237 ~~~~l~~~i~~~~~~~~ 253 (358)
+.+++++|..+..+.-.
T Consensus 120 ~Kd~iieFAhR~a~aiI 136 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAAII 136 (468)
T ss_pred cHHHHHHHHHhccccee
Confidence 99999999988766543
No 90
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.70 E-value=1.2e-16 Score=124.30 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=84.6
Q ss_pred CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE-EEeC
Q 018270 147 TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFPK 224 (358)
Q Consensus 147 ~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~-~~~~ 224 (358)
+..+|++.+. ..+++++|.|||+||+||+.+.|.++++|+.+. +.+.|++||+|+++++++.|+|.+.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 4678888875 457899999999999999999999999999984 34788999999999999999999776666 8888
Q ss_pred CCcceeeecC--------CCCHHHHHHHHHHhcC
Q 018270 225 GNKDGEEYGG--------GRDLEDFVSFINEKCG 250 (358)
Q Consensus 225 g~~~~~~~~g--------~~~~~~l~~~i~~~~~ 250 (358)
|.....+..| ..+.++|.+-+.....
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 8656666677 4677788877776553
No 91
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.70 E-value=2e-16 Score=125.56 Aligned_cols=102 Identities=23% Similarity=0.441 Sum_probs=84.4
Q ss_pred cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCC
Q 018270 148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKG 225 (358)
Q Consensus 148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g 225 (358)
...|+..+ ..+++++|.||++||++|+.+.|.+.++++.+.. .+.|+.||++ ....++++|+|.++||+++|..+
T Consensus 10 ~~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 45677766 7789999999999999999999999999999863 3555555555 44688999999999999999755
Q ss_pred CcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270 226 NKDGEEYGGGRDLEDFVSFINEKCGTS 252 (358)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (358)
++....+.|..+.++|.++|.+.+...
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 567778899999999999999887544
No 92
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.70 E-value=1.4e-16 Score=121.67 Aligned_cols=89 Identities=26% Similarity=0.404 Sum_probs=77.6
Q ss_pred CCceEcCcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270 141 SNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218 (358)
Q Consensus 141 ~~v~~l~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 218 (358)
..+.+++.++|.+.+.+. +++++|.||+|||++|+.+.|.+++++..+. ++.|++||++++ .++++|+|.++||
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 347788899999988555 3899999999999999999999999999984 588999999988 9999999999999
Q ss_pred EEEEeCCCcceeeecC
Q 018270 219 LKFFPKGNKDGEEYGG 234 (358)
Q Consensus 219 i~~~~~g~~~~~~~~g 234 (358)
+++|++|. ...++.|
T Consensus 80 ~~~f~~G~-~v~~~~G 94 (113)
T cd02957 80 LLVYKNGE-LIDNIVG 94 (113)
T ss_pred EEEEECCE-EEEEEec
Confidence 99999884 4555555
No 93
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-16 Score=118.86 Aligned_cols=86 Identities=35% Similarity=0.740 Sum_probs=72.2
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 236 (358)
.+++.++|+|||+|||||+.+.|.+.+||..|. ++.|++||+++..++++.++|...||+++|++|. ....+.|.-
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vGa~ 94 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVGAN 94 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEecCC
Confidence 456899999999999999999999999999994 5999999999999999999999999999999885 455555543
Q ss_pred CHHHHHHHHHH
Q 018270 237 DLEDFVSFINE 247 (358)
Q Consensus 237 ~~~~l~~~i~~ 247 (358)
.+.+.+.+..
T Consensus 95 -~~~l~~~i~~ 104 (106)
T KOG0907|consen 95 -KAELEKKIAK 104 (106)
T ss_pred -HHHHHHHHHh
Confidence 3366655543
No 94
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.69 E-value=1.5e-16 Score=119.88 Aligned_cols=94 Identities=29% Similarity=0.492 Sum_probs=81.4
Q ss_pred ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcccEEEE
Q 018270 149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~Pti~~ 221 (358)
+.|++.+ ..+++++|.||++||++|+.+.|.+ .++++.+. +++.++.+|+++ ...++++|+|.++||+++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3566766 6789999999999999999999988 57888875 379999999886 578999999999999999
Q ss_pred EeC-CCcceeeecCCCCHHHHHHHH
Q 018270 222 FPK-GNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 222 ~~~-g~~~~~~~~g~~~~~~l~~~i 245 (358)
|.+ +++.+.++.|..+.++|.++|
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHh
Confidence 986 456788899999999999886
No 95
>PTZ00102 disulphide isomerase; Provisional
Probab=99.69 E-value=1.8e-16 Score=152.28 Aligned_cols=112 Identities=45% Similarity=0.887 Sum_probs=100.6
Q ss_pred CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPT 218 (358)
Q Consensus 140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt 218 (358)
+..+..++..+|+..+ ..++.++|.||++||++|+.+.|.|.++++.+... .++.++.|||+.+.++|++|+|.++||
T Consensus 31 ~~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT 109 (477)
T ss_pred CCCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccE
Confidence 4568899999999988 66789999999999999999999999999988543 579999999999999999999999999
Q ss_pred EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270 219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 254 (358)
Q Consensus 219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 254 (358)
+++|++|+. ..|.|.++.+.|.+|+++..++...
T Consensus 110 ~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 110 IKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVT 143 (477)
T ss_pred EEEEECCce--EEecCCCCHHHHHHHHHHhhCCCce
Confidence 999998854 4899999999999999999876543
No 96
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.68 E-value=2.5e-16 Score=122.58 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=83.8
Q ss_pred ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE-EccC
Q 018270 29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ-WFPK 105 (358)
Q Consensus 29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~-~~~~ 105 (358)
+.++|++.+ .++++++|.|||+||++|+.+.|.+++++++++ +.+.|++||++++++++..|+|.+.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 468899888 568899999999999999999999999999986 55889999999999999999999887766 8887
Q ss_pred CCCCcccccC--------CCCHHHHHHHHhcc
Q 018270 106 GSLEPKKYEG--------PRSTEALAEYVNNE 129 (358)
Q Consensus 106 ~~~~~~~~~g--------~~~~~~i~~~i~~~ 129 (358)
|.....+..| ..+.+++.+-++..
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 7645466667 56778888777664
No 97
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=2.6e-16 Score=124.89 Aligned_cols=100 Identities=24% Similarity=0.449 Sum_probs=84.8
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEEEccCCC
Q 018270 30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
...|++.+..+++++|+||++||++|+.+.|.+.++++.+. +.+.|+.||.+. ...++++|+|.++|++++|++++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG--DQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc--cCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 45678888889999999999999999999999999999986 346666666654 45889999999999999997666
Q ss_pred CCcccccCCCCHHHHHHHHhccCC
Q 018270 108 LEPKKYEGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 108 ~~~~~~~g~~~~~~i~~~i~~~~~ 131 (358)
....++.|..+.+++.+++.+...
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHc
Confidence 566788899999999999988654
No 98
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.68 E-value=5.2e-16 Score=118.14 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=75.6
Q ss_pred CceEcCc-ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270 142 NVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 142 ~v~~l~~-~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~ 220 (358)
.+..++. .+|.+.+ ..+++++|.||+|||++|+.+.|.++++++.+. ++.|++||++++++++++|+|.++||++
T Consensus 5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 4566666 8899988 567899999999999999999999999999873 5899999999999999999999999999
Q ss_pred EEeCCCcceeeec
Q 018270 221 FFPKGNKDGEEYG 233 (358)
Q Consensus 221 ~~~~g~~~~~~~~ 233 (358)
+|++|. ...++.
T Consensus 81 ~fk~G~-~v~~~~ 92 (113)
T cd02989 81 LFKNGK-TVDRIV 92 (113)
T ss_pred EEECCE-EEEEEE
Confidence 999884 333443
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.67 E-value=2.9e-16 Score=116.49 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=71.6
Q ss_pred ccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270 149 DNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227 (358)
Q Consensus 149 ~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 227 (358)
+.|++.+.+ .+++|+|.|+|+||+||+.+.|.++++|+.+. +.+.|++||+++.++++++|+|.+.||++||.+|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 456776644 48999999999999999999999999999994 239999999999999999999999999999999866
Q ss_pred ceeee
Q 018270 228 DGEEY 232 (358)
Q Consensus 228 ~~~~~ 232 (358)
....|
T Consensus 81 ~~~d~ 85 (114)
T cd02986 81 MKVDY 85 (114)
T ss_pred EEEec
Confidence 55555
No 100
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.67 E-value=2.3e-16 Score=120.06 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=77.0
Q ss_pred CeEEcCh-hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 24 DVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 24 ~v~~l~~-~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
.+..++. ++|.+.++++.+++|+||++||++|+.+.|.++++++.+ +.+.|++||+++.++++++|+|.++||+++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~---~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH---LETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc---CCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 4566666 899999988899999999999999999999999999987 458999999999999999999999999999
Q ss_pred ccCCCCCccccc
Q 018270 103 FPKGSLEPKKYE 114 (358)
Q Consensus 103 ~~~~~~~~~~~~ 114 (358)
|++|... .++.
T Consensus 82 fk~G~~v-~~~~ 92 (113)
T cd02989 82 FKNGKTV-DRIV 92 (113)
T ss_pred EECCEEE-EEEE
Confidence 9988643 3443
No 101
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.67 E-value=1.4e-16 Score=121.73 Aligned_cols=88 Identities=24% Similarity=0.425 Sum_probs=77.2
Q ss_pred CCeEEcChhhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270 23 DDVVVLTEDNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 99 (358)
..+.+++.++|.+.+.+. ++++|+||++||++|+.+.|.++++++.+. .+.|++||++++ .++++|+|.++||
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 457788999999988544 899999999999999999999999999984 588999999998 9999999999999
Q ss_pred EEEccCCCCCcccccC
Q 018270 100 IQWFPKGSLEPKKYEG 115 (358)
Q Consensus 100 l~~~~~~~~~~~~~~g 115 (358)
+++|.+|... .++.|
T Consensus 80 ~~~f~~G~~v-~~~~G 94 (113)
T cd02957 80 LLVYKNGELI-DNIVG 94 (113)
T ss_pred EEEEECCEEE-EEEec
Confidence 9999988643 55555
No 102
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4e-16 Score=116.06 Aligned_cols=86 Identities=31% Similarity=0.680 Sum_probs=73.6
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 117 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~ 117 (358)
.++++++|+|||+|||+|+.+.|.+.+++.+|. ++.|++||+++..+++++++|...||+++|++|... .++.|..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa~ 94 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGAN 94 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE-EEEecCC
Confidence 446999999999999999999999999999995 499999999999999999999999999999887654 6777644
Q ss_pred CHHHHHHHHhc
Q 018270 118 STEALAEYVNN 128 (358)
Q Consensus 118 ~~~~i~~~i~~ 128 (358)
. +.+.+.+..
T Consensus 95 ~-~~l~~~i~~ 104 (106)
T KOG0907|consen 95 K-AELEKKIAK 104 (106)
T ss_pred H-HHHHHHHHh
Confidence 3 366665543
No 103
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.65 E-value=7.5e-16 Score=114.54 Aligned_cols=94 Identities=27% Similarity=0.551 Sum_probs=79.6
Q ss_pred ChhhHHHHhcCC--CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270 29 TEDNFEKEVGQD--RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106 (358)
Q Consensus 29 ~~~~f~~~~~~~--~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~ 106 (358)
+.++|++.+... ++++|.||++||++|+.+.|.++++++.+. ..+.++.+|+++.++++++|++.++||+++|.+|
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 357888888555 999999999999999999999999999873 6799999999999999999999999999999866
Q ss_pred CCCcccccCCCCHHHHHHHH
Q 018270 107 SLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 107 ~~~~~~~~g~~~~~~i~~~i 126 (358)
. ...++.| .+.+.|.+.|
T Consensus 79 ~-~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 T-IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred E-EEEEEeC-CCHHHHHHhh
Confidence 4 4355666 4667776655
No 104
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.65 E-value=1e-15 Score=113.77 Aligned_cols=94 Identities=24% Similarity=0.590 Sum_probs=78.5
Q ss_pred cccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270 148 ADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 226 (358)
Q Consensus 148 ~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 226 (358)
.++|++.+... +++++|.||++||++|+.+.|.++++++.+ ..++.++.+|+++..+++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g- 78 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG- 78 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECC-
Confidence 45778877544 589999999999999999999999999987 36899999999999999999999999999999876
Q ss_pred cceeeecCCCCHHHHHHHH
Q 018270 227 KDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 227 ~~~~~~~g~~~~~~l~~~i 245 (358)
+...++.| .+.+.|.+.|
T Consensus 79 ~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEEeC-CCHHHHHHhh
Confidence 34445555 4567766654
No 105
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.64 E-value=1.9e-15 Score=112.23 Aligned_cols=93 Identities=28% Similarity=0.557 Sum_probs=82.8
Q ss_pred HHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCccee
Q 018270 151 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230 (358)
Q Consensus 151 f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~ 230 (358)
.+..+...++++++.||++||++|+.+.|.++++++.+. +++.++.+|++++++++++++|.++|++++|++| +...
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~ 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVK 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEE
Confidence 345555788999999999999999999999999999885 4699999999999999999999999999999875 5678
Q ss_pred eecCCCCHHHHHHHHH
Q 018270 231 EYGGGRDLEDFVSFIN 246 (358)
Q Consensus 231 ~~~g~~~~~~l~~~i~ 246 (358)
++.|..+.++|.+|++
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 8999999999998873
No 106
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.64 E-value=2.4e-15 Score=114.58 Aligned_cols=96 Identities=28% Similarity=0.372 Sum_probs=81.5
Q ss_pred HHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ce
Q 018270 151 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG 229 (358)
Q Consensus 151 f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~ 229 (358)
|.+.+ ..+..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|.++||+++|++|+. ..
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 43434 45667899999999999999999999999875 468899999999999999999999999999998754 33
Q ss_pred eeecCCCCHHHHHHHHHHhcC
Q 018270 230 EEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 230 ~~~~g~~~~~~l~~~i~~~~~ 250 (358)
.+|.|..+..++.+||...++
T Consensus 91 ~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEEecCchHHHHHHHHHHHh
Confidence 478899999999999987654
No 107
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.63 E-value=1.8e-15 Score=112.30 Aligned_cols=87 Identities=29% Similarity=0.538 Sum_probs=79.2
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 117 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~ 117 (358)
+.+++++|.||++||++|+.+.|.++++++.++ +.+.++.+|++++++++.+++|.++|++++|++|. ....+.|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v~~~~g~~ 87 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LVKEISGVK 87 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EEEEEeCCc
Confidence 678999999999999999999999999999986 46999999999999999999999999999998654 558889999
Q ss_pred CHHHHHHHHh
Q 018270 118 STEALAEYVN 127 (358)
Q Consensus 118 ~~~~i~~~i~ 127 (358)
+.+++.+|++
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 9999998874
No 108
>PTZ00051 thioredoxin; Provisional
Probab=99.63 E-value=1.8e-15 Score=112.72 Aligned_cols=90 Identities=34% Similarity=0.683 Sum_probs=77.5
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCC
Q 018270 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 108 (358)
Q Consensus 29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~ 108 (358)
+.++|.++++.+++++|+||++||++|+.+.|.+.++++.+ .++.++.+|++++..++++|+|.++|++++|++|..
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY---TKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc---CCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeE
Confidence 46788888888999999999999999999999999999976 458999999999999999999999999999977653
Q ss_pred CcccccCCCCHHHHH
Q 018270 109 EPKKYEGPRSTEALA 123 (358)
Q Consensus 109 ~~~~~~g~~~~~~i~ 123 (358)
...+.|. ..++|.
T Consensus 84 -~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 84 -VDTLLGA-NDEALK 96 (98)
T ss_pred -EEEEeCC-CHHHhh
Confidence 3677774 445443
No 109
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.62 E-value=4.2e-15 Score=121.79 Aligned_cols=104 Identities=21% Similarity=0.339 Sum_probs=85.9
Q ss_pred CCCCceEcCc-ccHHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270 139 VPSNVVVLTA-DNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG 215 (358)
Q Consensus 139 ~~~~v~~l~~-~~f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~ 215 (358)
....+.+++. .+|.+.+...+ .+|+|.||++||++|+.+.|.+.++|..+ +.+.|++||++.. .++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~---~~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY---PAVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC---CCeEEEEEeccch-hhHHhCCCCC
Confidence 4567888988 99999985444 48999999999999999999999999988 4699999999987 8999999999
Q ss_pred ccEEEEEeCCCcceeeecC-------CCCHHHHHHHHHH
Q 018270 216 FPTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE 247 (358)
Q Consensus 216 ~Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~ 247 (358)
+||+++|++|.. ...+.| ..+.+.|..|+.+
T Consensus 136 vPTlllyk~G~~-v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPALLVYKGGEL-IGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEECCEE-EEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999998853 323322 3667777777654
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.61 E-value=3.6e-15 Score=110.62 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=70.9
Q ss_pred hhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 30 EDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 30 ~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
.+++++.+. ++++++|.|+|+||++|+.+.|.+++++++++ +.+.|+.||.++.+++++.|+|...||.++|.+|.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 356777773 68999999999999999999999999999995 34999999999999999999999999999998876
Q ss_pred CCcccc
Q 018270 108 LEPKKY 113 (358)
Q Consensus 108 ~~~~~~ 113 (358)
..-..+
T Consensus 80 h~~~d~ 85 (114)
T cd02986 80 HMKVDY 85 (114)
T ss_pred EEEEec
Confidence 433333
No 111
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.8e-15 Score=122.21 Aligned_cols=107 Identities=29% Similarity=0.561 Sum_probs=89.3
Q ss_pred CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270 147 TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 225 (358)
Q Consensus 147 ~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 225 (358)
++..|...+. ...+.++|+|+|.||+||+...|.|..++.+| +..+|.+||.++.+..+..+||.+.||+++|.+|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY---p~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY---PGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC---cccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 3567777663 34579999999999999999999999999999 5789999999999999999999999999999998
Q ss_pred CcceeeecCCCCHHHHHHHHHHhcCCCCCCCCC
Q 018270 226 NKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ 258 (358)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~ 258 (358)
.+ ...+ -+.++..|.+.|.++.+++....+.
T Consensus 85 ~k-id~~-qGAd~~gLe~kv~~~~stsaa~~~~ 115 (288)
T KOG0908|consen 85 VK-IDQI-QGADASGLEEKVAKYASTSAASSGT 115 (288)
T ss_pred eE-eeee-cCCCHHHHHHHHHHHhccCcccccC
Confidence 43 3333 4578889999999988877654433
No 112
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.60 E-value=6e-15 Score=115.03 Aligned_cols=98 Identities=20% Similarity=0.373 Sum_probs=82.9
Q ss_pred hhHHHHhcCC-CcEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCceEEEEEeCccc-------------hhhHhhcC
Q 018270 31 DNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYE---KLGASFKKAKSVLIGKVDCDEH-------------KSLCSKYG 93 (358)
Q Consensus 31 ~~f~~~~~~~-~~~lv~fya~~c~~C~~~~~~~~---~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~ 93 (358)
+.+.++.+++ ++++|.||++||++|+.+.|.+. .+.+.++ +.+.++.+|.+.+ .+++.+|+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 4566777888 99999999999999999999885 5666665 4688889998764 68999999
Q ss_pred ccCCCeEEEccCC-CCCcccccCCCCHHHHHHHHhccC
Q 018270 94 VQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 94 i~~~P~l~~~~~~-~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
|.++||+++|.++ +....++.|..+.+.+.++++...
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 9999999999987 666678899999999999888653
No 113
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.60 E-value=4.8e-15 Score=112.93 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=82.9
Q ss_pred hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC-
Q 018270 31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE- 109 (358)
Q Consensus 31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~- 109 (358)
++|.+.+.....++|.||++||++|+.+.|.++++++.+ +.+.+..+|.+++++++++|+|.++|++++|++|+..
T Consensus 13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 335555667778999999999999999999999999875 5589999999999999999999999999999876533
Q ss_pred cccccCCCCHHHHHHHHhccC
Q 018270 110 PKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~i~~~~ 130 (358)
..++.|..+..++.+||....
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred eEEEEecCchHHHHHHHHHHH
Confidence 247889999999999988654
No 114
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.59 E-value=7.1e-15 Score=107.83 Aligned_cols=93 Identities=37% Similarity=0.743 Sum_probs=82.7
Q ss_pred hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCc
Q 018270 31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 110 (358)
Q Consensus 31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~ 110 (358)
++|.+.+..+++++|.||++||++|+.+.+.+.++++. . +.+.++.+|++.+.+++++|++.++|++++|..|. ..
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~ 76 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EV 76 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EE
Confidence 35778887779999999999999999999999999987 2 67999999999999999999999999999998776 44
Q ss_pred ccccCCCCHHHHHHHHh
Q 018270 111 KKYEGPRSTEALAEYVN 127 (358)
Q Consensus 111 ~~~~g~~~~~~i~~~i~ 127 (358)
..+.|..+.+.+.++|+
T Consensus 77 ~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 77 DRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEecCCCHHHHHHHhC
Confidence 78889888899988873
No 115
>PTZ00051 thioredoxin; Provisional
Probab=99.59 E-value=1.1e-14 Score=108.42 Aligned_cols=90 Identities=31% Similarity=0.687 Sum_probs=76.1
Q ss_pred CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 226 (358)
Q Consensus 147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 226 (358)
+.++|++++ +.++++++.||++||++|+.+.|.+.++++.+ .++.++.+|++++..++++|+|.++||+++|++|+
T Consensus 7 ~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 7 SQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY---TKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred CHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc---CCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 356777877 67889999999999999999999999999976 36899999999999999999999999999998774
Q ss_pred cceeeecCCCCHHHHH
Q 018270 227 KDGEEYGGGRDLEDFV 242 (358)
Q Consensus 227 ~~~~~~~g~~~~~~l~ 242 (358)
....+.|. ..++|.
T Consensus 83 -~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 83 -VVDTLLGA-NDEALK 96 (98)
T ss_pred -EEEEEeCC-CHHHhh
Confidence 55667774 444443
No 116
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.58 E-value=3.9e-13 Score=116.49 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=140.6
Q ss_pred CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhh------HHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc
Q 018270 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLA------PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~------~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 95 (358)
...|+.||.+||.+++++....+|+||.|--. .+... ...-+++++.-....|.|+.||..++.++++++|+.
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 45799999999999999999999999998732 22222 223345555445578999999999999999999999
Q ss_pred CCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCc-ccHHHHHhcCCCcEEEEEcCCCCccc
Q 018270 96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHC 174 (358)
Q Consensus 96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~-~~f~~~~~~~~~~v~v~f~a~~C~~c 174 (358)
..+++.+|..|. .+.|.|.++++.+++||...... .|..++. .++..+-.-...+.+|-|+.+.-
T Consensus 112 E~~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~ed---------PVeiIn~~~e~~~Fe~ied~~klIGyFk~~~--- 177 (383)
T PF01216_consen 112 EEGSIYVFKDGE--VIEYDGERSADTLVEFLLDLLED---------PVEIINNKHELKAFERIEDDIKLIGYFKSED--- 177 (383)
T ss_dssp STTEEEEEETTE--EEEE-S--SHHHHHHHHHHHHSS---------SEEEE-SHHHHHHHHH--SS-EEEEE-SSTT---
T ss_pred ccCcEEEEECCc--EEEecCccCHHHHHHHHHHhccc---------chhhhcChhhhhhhhhcccceeEEEEeCCCC---
Confidence 999999999884 48999999999999999987543 3445544 33333332244577777776631
Q ss_pred chhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHHHHHHHhcCC
Q 018270 175 KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGT 251 (358)
Q Consensus 175 ~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~ 251 (358)
......|+++|+.|+ +-+.|.. .-++.+++++++. .-.+-+|.+-...|+...|. .+.+++.+||+++-.+
T Consensus 178 s~~yk~FeeAAe~F~--p~IkFfA---tfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rp 249 (383)
T PF01216_consen 178 SEHYKEFEEAAEHFQ--PYIKFFA---TFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRP 249 (383)
T ss_dssp SHHHHHHHHHHHHCT--TTSEEEE---E-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-
T ss_pred cHHHHHHHHHHHhhc--CceeEEE---EecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchh
Confidence 124558899999996 5666665 5568899999996 88888998887788877764 6889999999987543
No 117
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=1.1e-14 Score=119.45 Aligned_cols=102 Identities=17% Similarity=0.323 Sum_probs=83.6
Q ss_pred CCCeEEcCh-hhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270 22 ADDVVVLTE-DNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY 97 (358)
Q Consensus 22 ~~~v~~l~~-~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 97 (358)
...+.+++. ++|.+.+.+. .+++|+||++||++|+.+.|.+.+++..+ +.+.|++||+++. .++.+|+|.++
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~---~~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY---PAVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC---CCeEEEEEeccch-hhHHhCCCCCC
Confidence 356788888 9999998433 48999999999999999999999999998 4699999999987 89999999999
Q ss_pred CeEEEccCCCCCccccc-------CCCCHHHHHHHHhc
Q 018270 98 PTIQWFPKGSLEPKKYE-------GPRSTEALAEYVNN 128 (358)
Q Consensus 98 P~l~~~~~~~~~~~~~~-------g~~~~~~i~~~i~~ 128 (358)
||+++|.+|... ..+. ...+.+.+..++.+
T Consensus 137 PTlllyk~G~~v-~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 137 PALLVYKGGELI-GNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CEEEEEECCEEE-EEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999987633 3332 24556666666654
No 118
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.58 E-value=2.7e-13 Score=113.17 Aligned_cols=173 Identities=24% Similarity=0.379 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHHHHHHhccCCCCcc
Q 018270 57 KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEALAEYVNNEGGTNVK 135 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i~~~i~~~~~~~~~ 135 (358)
.....|.++|+.+. +.+.|+.+. +.++++.+++.. |++++|+++......|.|. .+.++|.+||....-+
T Consensus 7 ~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P--- 77 (184)
T PF13848_consen 7 ELFEIFEEAAEKLK--GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP--- 77 (184)
T ss_dssp HHHHHHHHHHHHHT--TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST---
T ss_pred HHHHHHHHHHHhCc--CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc---
Confidence 45678899999997 568999887 677999999999 9999999866666899997 8999999999987543
Q ss_pred ccCCCCCceEcCcccHHHHHhcCCCc-EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC
Q 018270 136 IAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 214 (358)
Q Consensus 136 ~~~~~~~v~~l~~~~f~~~~~~~~~~-v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~ 214 (358)
.+.+++..++..+. ..+.+ +++.|..........+...++.+|+.++ +.+.|+.+|++..+.+++.+|++
T Consensus 78 ------~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~ 148 (184)
T PF13848_consen 78 ------LVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGID 148 (184)
T ss_dssp ------SCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTT
T ss_pred ------cccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCC
Confidence 37789999999988 55544 7788877667777888889999999886 56999999999888999999998
Q ss_pred --cccEEEEEeCCC-cceeeecCCCCHHHHHHHHHH
Q 018270 215 --GFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 215 --~~Pti~~~~~g~-~~~~~~~g~~~~~~l~~~i~~ 247 (358)
.+|+++++.... .....+.|..+.+.+.+|+++
T Consensus 149 ~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 149 EDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 799999998433 222334889999999999974
No 119
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.57 E-value=1.8e-14 Score=112.31 Aligned_cols=97 Identities=27% Similarity=0.391 Sum_probs=79.9
Q ss_pred HHHHHhcCC-CcEEEEEcCCCCcccchhhhhHH---HHHHHhcCCCCeEEEEEeCccc-------------HHHHHhcCC
Q 018270 151 FDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKY-------------KDLAEKYGV 213 (358)
Q Consensus 151 f~~~~~~~~-~~v~v~f~a~~C~~c~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~v 213 (358)
++... ..+ ++++|.||++||++|+.+.|.+. .+.+.+. .++.++.+|.+.+ .+++.+|+|
T Consensus 6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34444 566 99999999999999999999875 5656554 4688899998754 689999999
Q ss_pred CcccEEEEEeCC-CcceeeecCCCCHHHHHHHHHHhcC
Q 018270 214 SGFPTLKFFPKG-NKDGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 214 ~~~Pti~~~~~g-~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
.++||+++|.++ ++...++.|..+.+.+.++|+...+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999987 6778889999999999999887543
No 120
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.55 E-value=3.2e-14 Score=109.57 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=80.0
Q ss_pred CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----------hhHhh
Q 018270 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----------SLCSK 91 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------~l~~~ 91 (358)
+.+..++.++|.+.+++++..+|+|+++|||+|+.+.|.+.++++.. ++.++.+|.+.+. ++.+.
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 35677888999999998999999999999999999999999999873 3567777776432 45566
Q ss_pred cC----ccCCCeEEEccCCCCCcccccC-CCCHHHHHHHHh
Q 018270 92 YG----VQGYPTIQWFPKGSLEPKKYEG-PRSTEALAEYVN 127 (358)
Q Consensus 92 ~~----i~~~P~l~~~~~~~~~~~~~~g-~~~~~~i~~~i~ 127 (358)
|+ |.++||+++|++|... .+..| ..+.++|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQV-SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence 65 4569999999998755 56667 566889988864
No 121
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.54 E-value=5.8e-14 Score=102.89 Aligned_cols=91 Identities=37% Similarity=0.796 Sum_probs=80.4
Q ss_pred cHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcce
Q 018270 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 229 (358)
Q Consensus 150 ~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~ 229 (358)
+|++.+ ..+++++|.||++||++|+.+.+.+.++++. .+++.++.+|++.+.+++++|++.++|++++|.+|+ ..
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~ 76 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EV 76 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EE
Confidence 566766 4448999999999999999999999999987 367999999999999999999999999999998874 56
Q ss_pred eeecCCCCHHHHHHHH
Q 018270 230 EEYGGGRDLEDFVSFI 245 (358)
Q Consensus 230 ~~~~g~~~~~~l~~~i 245 (358)
..+.|..+.+.|.+||
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 7788888889999887
No 122
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.53 E-value=7.8e-14 Score=107.42 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=75.9
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------HHHHHhc
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKY 211 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------~~l~~~~ 211 (358)
+..++..+|.+.+ ..++.++|.|+++|||+|+.+.|.+.++++.. ++.+..+|.+.+ .++.++|
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4567888898888 66788999999999999999999999999973 344666666532 2566776
Q ss_pred CCC----cccEEEEEeCCCcceeeecC-CCCHHHHHHHHH
Q 018270 212 GVS----GFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN 246 (358)
Q Consensus 212 ~v~----~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~ 246 (358)
++. ++||+++|++|+ ......| ..+.++|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 654 599999999985 4455666 567999998863
No 123
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.52 E-value=7.9e-14 Score=115.75 Aligned_cols=102 Identities=18% Similarity=0.291 Sum_probs=82.2
Q ss_pred CCCCceEcCcccHHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270 139 VPSNVVVLTADNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 216 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~ 216 (358)
....+.+++..+|...+...+ .+|+|.||++||++|+.+.|.|+++|..|. .+.|++||++.. ...|++.++
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCC
Confidence 456788999999998775543 489999999999999999999999999983 689999999754 689999999
Q ss_pred cEEEEEeCCCcceeeecC-------CCCHHHHHHHHHH
Q 018270 217 PTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE 247 (358)
Q Consensus 217 Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~ 247 (358)
||+++|++|. ....+.| ..+.++|-.++.+
T Consensus 154 PTlliyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 154 PTILVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CEEEEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999885 3334433 3566777666653
No 124
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.5e-14 Score=115.24 Aligned_cols=101 Identities=29% Similarity=0.606 Sum_probs=87.2
Q ss_pred ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270 29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106 (358)
Q Consensus 29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~ 106 (358)
++.+|+..+ .+.+.++|.|||+||+||+.+.|.|+.++.+| +...|.+||+++-+..+..+||+..||+++|.+|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY---p~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY---PGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC---cccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 467788877 55679999999999999999999999999999 5578999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHhccCCCCc
Q 018270 107 SLEPKKYEGPRSTEALAEYVNNEGGTNV 134 (358)
Q Consensus 107 ~~~~~~~~g~~~~~~i~~~i~~~~~~~~ 134 (358)
.++ ..+.| -++..+.+.+..+.....
T Consensus 85 ~ki-d~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 85 VKI-DQIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred eEe-eeecC-CCHHHHHHHHHHHhccCc
Confidence 755 77776 577888888877665444
No 125
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.50 E-value=1.6e-13 Score=103.11 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=76.3
Q ss_pred CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC--cccEEEEEeCCCcceeeecC-C
Q 018270 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFFPKGNKDGEEYGG-G 235 (358)
Q Consensus 159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~Pti~~~~~g~~~~~~~~g-~ 235 (358)
++++++.|+++||++|+.+.|.++++|+.++ +++.|+.+|+++++.+++.||+. ++|++++++..+...+.+.+ .
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 6899999999999999999999999999996 57999999999999999999999 99999999983222344444 4
Q ss_pred CCHHHHHHHHHHh
Q 018270 236 RDLEDFVSFINEK 248 (358)
Q Consensus 236 ~~~~~l~~~i~~~ 248 (358)
.+.+++.+|+.+.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 5999999999764
No 126
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.48 E-value=3.1e-13 Score=101.56 Aligned_cols=89 Identities=20% Similarity=0.302 Sum_probs=76.7
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--CCCeEEEccCCCCCccccc-C
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWFPKGSLEPKKYE-G 115 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~P~l~~~~~~~~~~~~~~-g 115 (358)
.++++++.|+++||++|+.+.|.+.+++++++ +.+.|+.+|+++.+.+++.||+. ++|++++++.++.....+. |
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 36899999999999999999999999999998 67999999999999999999999 9999999988321223444 4
Q ss_pred CCCHHHHHHHHhcc
Q 018270 116 PRSTEALAEYVNNE 129 (358)
Q Consensus 116 ~~~~~~i~~~i~~~ 129 (358)
..+.+++.+|+++.
T Consensus 89 ~~~~~~l~~fi~~~ 102 (103)
T cd02982 89 ELTAESLEEFVEDF 102 (103)
T ss_pred ccCHHHHHHHHHhh
Confidence 45999999999753
No 127
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=2e-13 Score=113.29 Aligned_cols=100 Identities=20% Similarity=0.328 Sum_probs=80.1
Q ss_pred CCCeEEcChhhHHHHh-cC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270 22 ADDVVVLTEDNFEKEV-GQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~-~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (358)
...+.+++.++|...+ .. +.+++|+||++||++|+.+.|.|.+++..+ +.+.|++||+++. +..|++.++|
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~---~~vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF---PDTKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC---CCCEEEEEEhHHh---HhhCCCCCCC
Confidence 4578899999998766 33 358999999999999999999999999998 4589999999753 5899999999
Q ss_pred eEEEccCCCCCcccccC-------CCCHHHHHHHHhc
Q 018270 99 TIQWFPKGSLEPKKYEG-------PRSTEALAEYVNN 128 (358)
Q Consensus 99 ~l~~~~~~~~~~~~~~g-------~~~~~~i~~~i~~ 128 (358)
|+++|++|... .++.| ..+.+++..++.+
T Consensus 155 Tlliyk~G~~v-~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 155 TILVYRNGDIV-KQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEECCEEE-EEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999988643 44433 3456666666543
No 128
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.45 E-value=7.3e-13 Score=95.03 Aligned_cols=80 Identities=25% Similarity=0.430 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHH
Q 018270 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 241 (358)
Q Consensus 162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l 241 (358)
.+..||++||++|+.+.|.++++++.+. .++.+..||.+++++++++||+.++||+++ +|. ..+.|..+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHH
Confidence 4678999999999999999999999884 458899999999999999999999999886 442 478899999999
Q ss_pred HHHHHHh
Q 018270 242 VSFINEK 248 (358)
Q Consensus 242 ~~~i~~~ 248 (358)
.+++++.
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998763
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.45 E-value=5.3e-13 Score=113.91 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=78.6
Q ss_pred CCCcEEEEEcC---CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC
Q 018270 158 KSKDVLVEFYA---PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG 234 (358)
Q Consensus 158 ~~~~v~v~f~a---~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g 234 (358)
.+...++.|++ +||++|+.+.|.++++++.+. .-.+.++.+|.+++++++++|+|.++||+++|++|.....++.|
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 34455777888 999999999999999999883 23467888888899999999999999999999988644468999
Q ss_pred CCCHHHHHHHHHHhcCC
Q 018270 235 GRDLEDFVSFINEKCGT 251 (358)
Q Consensus 235 ~~~~~~l~~~i~~~~~~ 251 (358)
..+.+++.+||...++.
T Consensus 97 ~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRV 113 (215)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988654
No 130
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.44 E-value=6.3e-13 Score=100.90 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=67.0
Q ss_pred ChhhHHHHhcC--CCcEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------chhhHhhc
Q 018270 29 TEDNFEKEVGQ--DRGALVEFYA-------PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------HKSLCSKY 92 (358)
Q Consensus 29 ~~~~f~~~~~~--~~~~lv~fya-------~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~l~~~~ 92 (358)
+.++|.+.+.. +++++|.||| +||++|+.+.|.++++++.++ +.+.|+.||+++ +.++...+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence 45778888854 6899999999 999999999999999999986 468999999976 45899999
Q ss_pred Ccc-CCCeEEEccCCC
Q 018270 93 GVQ-GYPTIQWFPKGS 107 (358)
Q Consensus 93 ~i~-~~P~l~~~~~~~ 107 (358)
+|. ++||+++|..++
T Consensus 86 ~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcccCCCEEEEEcCCc
Confidence 998 999999997664
No 131
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.41 E-value=1.4e-12 Score=93.58 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=70.2
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHH
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i 122 (358)
.+..||++||++|+.+.|.++++++.++ ..+.+..||.+++++++++|++.++|++++ +|. ..+.|..+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHH
Confidence 3678999999999999999999999886 558999999999999999999999999986 432 478899999999
Q ss_pred HHHHhcc
Q 018270 123 AEYVNNE 129 (358)
Q Consensus 123 ~~~i~~~ 129 (358)
.++++..
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9988753
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=99.41 E-value=1.6e-12 Score=108.23 Aligned_cols=92 Identities=10% Similarity=0.161 Sum_probs=77.7
Q ss_pred CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 226 (358)
Q Consensus 147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 226 (358)
+.++|++.+.+..+.++++|+|+||++|+.+.|.+.++++.| +++.|+.||++ |+|.++||+++|++|.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC---CCcEEEEEccc--------cCcccceEEEEEECCE
Confidence 456788887433578899999999999999999999999998 47999999987 9999999999999885
Q ss_pred cceeeecCCCCHHHHHHHHHHhcCC
Q 018270 227 KDGEEYGGGRDLEDFVSFINEKCGT 251 (358)
Q Consensus 227 ~~~~~~~g~~~~~~l~~~i~~~~~~ 251 (358)
...++.| .++..+..++.+..++
T Consensus 74 -~i~r~~G-~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 74 -LINSLEG-CNTSTLVSFIRGWAQK 96 (204)
T ss_pred -EEeeeeC-CCHHHHHHHHHHHcCC
Confidence 4556665 4699999999887764
No 133
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.41 E-value=8.7e-13 Score=100.13 Aligned_cols=78 Identities=21% Similarity=0.442 Sum_probs=66.3
Q ss_pred CcccHHHHHhc-CCCcEEEEEcC-------CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------cHHHHHhc
Q 018270 147 TADNFDEIVLD-KSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEKY 211 (358)
Q Consensus 147 ~~~~f~~~~~~-~~~~v~v~f~a-------~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~~l~~~~ 211 (358)
+.++|.+.+.. ++++++|.||| +||++|+.+.|.+++++..+. +++.|++||+++ +.++..+|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence 45677777743 36899999999 999999999999999999985 368899999875 46899999
Q ss_pred CCC-cccEEEEEeCCC
Q 018270 212 GVS-GFPTLKFFPKGN 226 (358)
Q Consensus 212 ~v~-~~Pti~~~~~g~ 226 (358)
+|. ++||+++|..|+
T Consensus 86 ~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcccCCCEEEEEcCCc
Confidence 998 999999997664
No 134
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.41 E-value=5.3e-13 Score=102.11 Aligned_cols=96 Identities=14% Similarity=0.338 Sum_probs=66.9
Q ss_pred hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-hhHhhcCccC--CCeEEEccCCC
Q 018270 31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SLCSKYGVQG--YPTIQWFPKGS 107 (358)
Q Consensus 31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~P~l~~~~~~~ 107 (358)
+.+..+..++++++|.|||+||++|+.+.|.+.+.........++.. +|.+.+. .....|++.+ +||+++|+++|
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~--v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVM--VNLEDDEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEE--EEecCCCCchhhhcccCCCccceEEEECCCC
Confidence 44555567899999999999999999999999998775542234444 4544443 3557899986 99999998666
Q ss_pred CCcc---cccCCCCHHHHHHHHhc
Q 018270 108 LEPK---KYEGPRSTEALAEYVNN 128 (358)
Q Consensus 108 ~~~~---~~~g~~~~~~i~~~i~~ 128 (358)
.... ...|..+.+.+...+..
T Consensus 88 k~~~~~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred CCchhhccCCCCccccccCCCHHH
Confidence 5433 44566665555554443
No 135
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.41 E-value=1.3e-11 Score=120.27 Aligned_cols=186 Identities=16% Similarity=0.237 Sum_probs=144.6
Q ss_pred CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc-CCCCCcccccCCCCH
Q 018270 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP-KGSLEPKKYEGPRST 119 (358)
Q Consensus 41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~-~~~~~~~~~~g~~~~ 119 (358)
...++.|+.+.|..|.++...++++++. . +.+.+-..|..++.+++++|+++..|++.+++ .+....++|.|...-
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s--~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFASL-S--EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHHhc-C--CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 3467788888999999999999999964 3 66888888988899999999999999999995 443445889888777
Q ss_pred HHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEE
Q 018270 120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198 (358)
Q Consensus 120 ~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~ 198 (358)
.++..||....+..-. -..++.+..+.+- .=++++ +-.|.+++|++|......+++++... +++..-.
T Consensus 444 ~Ef~s~i~~i~~~~~~-------~~~l~~~~~~~i~-~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~---~~i~~~~ 512 (555)
T TIGR03143 444 HELNSFILALYNAAGP-------GQPLGEELLEKIK-KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN---PNVEAEM 512 (555)
T ss_pred HhHHHHHHHHHHhcCC-------CCCCCHHHHHHHH-hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC---CCceEEE
Confidence 7788877765432211 1234555555544 334554 56678999999999999999998875 4788888
Q ss_pred EeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 199 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
+|..+.++++++|+|.++|++++= |. ..+.|..+.+++.+||
T Consensus 513 i~~~~~~~~~~~~~v~~vP~~~i~--~~---~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 513 IDVSHFPDLKDEYGIMSVPAIVVD--DQ---QVYFGKKTIEEMLELI 554 (555)
T ss_pred EECcccHHHHHhCCceecCEEEEC--CE---EEEeeCCCHHHHHHhh
Confidence 999999999999999999998773 32 4467888999999886
No 136
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.40 E-value=6.9e-13 Score=101.50 Aligned_cols=93 Identities=23% Similarity=0.447 Sum_probs=67.8
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--ccEEEEEeCCCcce---ee
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFFPKGNKDG---EE 231 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~Pti~~~~~g~~~~---~~ 231 (358)
..+++++|.|||+||++|+.+.|.+.+.+.......++..+.+|.+.. ...+.|++.+ +||+++|.++|+.. ..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 678999999999999999999999999877654344566655554432 3567899986 99999997554533 25
Q ss_pred ecCCCCHHHHHHHHHHhcC
Q 018270 232 YGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 232 ~~g~~~~~~l~~~i~~~~~ 250 (358)
..|..+.+.+.+++....+
T Consensus 96 ~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCccccccCCCHHHHHh
Confidence 5667777776666655443
No 137
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.39 E-value=6.3e-12 Score=103.83 Aligned_cols=104 Identities=27% Similarity=0.458 Sum_probs=83.0
Q ss_pred eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------
Q 018270 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--------------------- 83 (358)
Q Consensus 25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--------------------- 83 (358)
+..++.+.+....-.+++++|+||++||++|+...+.+.++++++++ ..+.++.++++
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 34455554443334578999999999999999999999999999874 24777777764
Q ss_pred -cchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 84 -EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 84 -~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
.+..+++.|++.++|+++++++++.....+.|..+.+++.+++++.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3457789999999999999988887766889999999999988753
No 138
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.37 E-value=4.4e-12 Score=119.54 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=75.3
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEE----------------------------EeCccchhhH
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK----------------------------VDCDEHKSLC 89 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~----------------------------vd~~~~~~l~ 89 (358)
+++++++|.|||+||++|+...|.+.+++++++. +.+.++. ++++.+.+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 5789999999999999999999999999998863 2344433 3445567789
Q ss_pred hhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270 90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 90 ~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
+.|+|.++|+++++.+++.....+.|..+.+++.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999999998887777676888999999999999984
No 139
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.37 E-value=3.3e-12 Score=98.13 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=66.6
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEeCccchhhHhh--------cCccCC
Q 018270 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCDEHKSLCSK--------YGVQGY 97 (358)
Q Consensus 29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~-~--~~~~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~ 97 (358)
+++.+.++.+++++++|.|+++||++|+.+.+. | .++++.++ .++.++.+|.++.+++++. |++.++
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 567788888999999999999999999999874 3 46777665 5688999999988877653 589999
Q ss_pred CeEEEccCCCCCc
Q 018270 98 PTIQWFPKGSLEP 110 (358)
Q Consensus 98 P~l~~~~~~~~~~ 110 (358)
|+++++++++...
T Consensus 82 Pt~vfl~~~G~~~ 94 (124)
T cd02955 82 PLNVFLTPDLKPF 94 (124)
T ss_pred CEEEEECCCCCEE
Confidence 9999999887653
No 140
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.34 E-value=2e-11 Score=97.53 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=66.3
Q ss_pred HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc------------hhhH-hhc---CccCCCe
Q 018270 36 EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------------KSLC-SKY---GVQGYPT 99 (358)
Q Consensus 36 ~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~P~ 99 (358)
.+..+++.+|+||++||++|++..|.+.+++++++ +.+..|+.+.. .... ..| ++.++|+
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 34556778999999999999999999999999873 33444444321 2232 345 7899999
Q ss_pred EEEccCCCCC-cccccCCCCHHHHHHHHhc
Q 018270 100 IQWFPKGSLE-PKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 100 l~~~~~~~~~-~~~~~g~~~~~~i~~~i~~ 128 (358)
.+++++.+.. ...+.|..+.+++.+.+.+
T Consensus 122 t~LID~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 122 TFLVNVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EEEEeCCCCEEEEEeecccCHHHHHHHHHH
Confidence 9999886543 3367899999998887765
No 141
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.2e-12 Score=120.54 Aligned_cols=109 Identities=32% Similarity=0.654 Sum_probs=88.5
Q ss_pred CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCc--ccHHHHHhcCCCc
Q 018270 139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD--KYKDLAEKYGVSG 215 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~--~~~~l~~~~~v~~ 215 (358)
..+.+++|+..+|...+..+.+..+|.||++|||+|+.++|.|+++|+.... .+-+.++.|||. .|..+|+.|+|.+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 4488999999999999987778999999999999999999999999998753 245788899987 6788999999999
Q ss_pred ccEEEEEeCCCcc---eeeecCCCCHHHHHHHHHH
Q 018270 216 FPTLKFFPKGNKD---GEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 216 ~Pti~~~~~g~~~---~~~~~g~~~~~~l~~~i~~ 247 (358)
||++.+|+.+... ...+.|.....++.+.+.+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHH
Confidence 9999999877432 3445555555555555543
No 142
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.32 E-value=4.4e-12 Score=96.80 Aligned_cols=87 Identities=32% Similarity=0.507 Sum_probs=64.7
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHH---HHHhhcCCceEEEEEeCccc--------------------hhhHhhcCc
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKL---GASFKKAKSVLIGKVDCDEH--------------------KSLCSKYGV 94 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~---~~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i 94 (358)
.+++++++.|+++||++|+.+.+.+... ...++ ..+.++.++++.. .++++.+||
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4678999999999999999999999854 44443 3577777777643 358899999
Q ss_pred cCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270 95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
+++|++++++.+|.....+.|..+.++|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999987666656789999999998875
No 143
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.32 E-value=1.1e-11 Score=120.09 Aligned_cols=102 Identities=21% Similarity=0.434 Sum_probs=82.3
Q ss_pred eEEc-ChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCcc----chhhHhhc
Q 018270 25 VVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE----HKSLCSKY 92 (358)
Q Consensus 25 v~~l-~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~ 92 (358)
+..+ +.+++++.+ .++++++|+|||+||++|+.+.+.. .++.+.++ ++.++++|.++ +.+++++|
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHc
Confidence 4445 356676665 4578999999999999999999875 67777773 48899999975 36789999
Q ss_pred CccCCCeEEEccCCCCC--cccccCCCCHHHHHHHHhcc
Q 018270 93 GVQGYPTIQWFPKGSLE--PKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 93 ~i~~~P~l~~~~~~~~~--~~~~~g~~~~~~i~~~i~~~ 129 (358)
++.++|++++|+++++. ..++.|..+.+++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999999866544 35788999999999999864
No 144
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.28 E-value=5.2e-11 Score=99.17 Aligned_cols=88 Identities=16% Similarity=0.295 Sum_probs=70.2
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----------------------hhHhhcCc
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----------------------SLCSKYGV 94 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i 94 (358)
..+++++|+||++||++|++..|.+.++.+. .+.++.|+.++++ .+++.|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 4689999999999999999999999888652 3556666653322 34557899
Q ss_pred cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270 95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
.++|+.+++++++.....+.|..+.+++.++++...
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 999999999877777788889999999988887654
No 145
>PHA02125 thioredoxin-like protein
Probab=99.28 E-value=1.7e-11 Score=86.05 Aligned_cols=70 Identities=24% Similarity=0.490 Sum_probs=55.0
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF 241 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l 241 (358)
++.||++||++|+.+.|.+.+++ +.+++||.+++.+++++|+|.++||++ .| .....+.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHH
Confidence 68999999999999999987652 457899999999999999999999987 33 333456663 455555
Q ss_pred HHH
Q 018270 242 VSF 244 (358)
Q Consensus 242 ~~~ 244 (358)
.+-
T Consensus 70 ~~~ 72 (75)
T PHA02125 70 KEK 72 (75)
T ss_pred HHH
Confidence 543
No 146
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=99.28 E-value=1.4e-10 Score=85.96 Aligned_cols=106 Identities=26% Similarity=0.481 Sum_probs=86.8
Q ss_pred CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHH-HHhcCCCCeEEEEEeCc-----ccHHHHHhcCCC-
Q 018270 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLDAD-----KYKDLAEKYGVS- 214 (358)
Q Consensus 142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~v~- 214 (358)
....|+.-+|++++ .+.+.++|.|-..+ |..+-+..|.++| +..+..+++.++.|.+. +|.+|+++|++.
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35779999999999 78899999998766 7788899999999 66666789999999987 578999999995
Q ss_pred -cccEEEEEeCCCcceeee--cCCCCHHHHHHHHHHhcC
Q 018270 215 -GFPTLKFFPKGNKDGEEY--GGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 215 -~~Pti~~~~~g~~~~~~~--~g~~~~~~l~~~i~~~~~ 250 (358)
.||.+++|..+...++.| .|+.+.++|..|++++.+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 599999999777789988 899999999999998755
No 147
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.27 E-value=9.4e-12 Score=94.94 Aligned_cols=87 Identities=31% Similarity=0.524 Sum_probs=64.2
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHH---HHhcCCCCeEEEEEeCccc--------------------HHHHHhcCC
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVVANLDADKY--------------------KDLAEKYGV 213 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la---~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~v 213 (358)
..++++++.|++|||++|+.+.+.+.+.. ..+. .++.++.++++.. .++++.|||
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 46789999999999999999999888643 3332 3577777777643 358999999
Q ss_pred CcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
+++||+++++..|+....+.|..+.++|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999986556677889999999998875
No 148
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.26 E-value=2.6e-11 Score=117.60 Aligned_cols=99 Identities=27% Similarity=0.517 Sum_probs=79.8
Q ss_pred CcccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcc
Q 018270 147 TADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGF 216 (358)
Q Consensus 147 ~~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~ 216 (358)
+.+++++.+. ..+++++|+|||+||++|+.+.+.. .++.+.++ ++.++++|+++ +.+++++|++.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 3466666653 3468999999999999999998864 56777663 58899999874 3689999999999
Q ss_pred cEEEEEeCCCcc--eeeecCCCCHHHHHHHHHHh
Q 018270 217 PTLKFFPKGNKD--GEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 217 Pti~~~~~g~~~--~~~~~g~~~~~~l~~~i~~~ 248 (358)
||+++|+++++. ..++.|..+.+++.+++++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999855454 46788999999999999863
No 149
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.25 E-value=6e-11 Score=104.15 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------cHHHHHhcCCCcccEEEEEeC-CCc
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------YKDLAEKYGVSGFPTLKFFPK-GNK 227 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------~~~l~~~~~v~~~Pti~~~~~-g~~ 227 (358)
.+++++|.||++||++|+.+.|.+.++++.+. -.+..+.+|.+. +..++++|||.++|+++++.+ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 57899999999999999999999999999984 234445554421 357899999999999999997 444
Q ss_pred ceeeecCCCCHHHHHHHHHHhcC
Q 018270 228 DGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 228 ~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
......|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 33445688999999999876544
No 150
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.24 E-value=5.8e-11 Score=94.85 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=65.9
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------cHHHH-Hhc---CCCcccEEEEEe
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------YKDLA-EKY---GVSGFPTLKFFP 223 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------~~~l~-~~~---~v~~~Pti~~~~ 223 (358)
.++..+|+||++||++|++..|.+.++++.+. -.+..+.+|-.. ..... ..| ++.++||.++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 45667999999999999999999999999873 234444444321 12333 445 789999999998
Q ss_pred CCCcc-eeeecCCCCHHHHHHHHHHh
Q 018270 224 KGNKD-GEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 224 ~g~~~-~~~~~g~~~~~~l~~~i~~~ 248 (358)
..+.. ...+.|..+.+++.+.+.+.
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 75443 44678999999998887653
No 151
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=6.6e-11 Score=90.92 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=60.9
Q ss_pred cccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEEeCcccHHHHHh--------cCCCcc
Q 018270 148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANLDADKYKDLAEK--------YGVSGF 216 (358)
Q Consensus 148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~vd~~~~~~l~~~--------~~v~~~ 216 (358)
.+.+.... ..+++++|.|+++||++|+.+.+ .|. ++++.+ +.+++++++|.++.+++++. ||+.++
T Consensus 5 ~eal~~Ak-~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l--~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKAR-REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL--NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHH-HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH--hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 34455544 78899999999999999999976 333 455554 24799999999987776653 589999
Q ss_pred cEEEEEeCCCccee
Q 018270 217 PTLKFFPKGNKDGE 230 (358)
Q Consensus 217 Pti~~~~~g~~~~~ 230 (358)
|+++++.+.++...
T Consensus 82 Pt~vfl~~~G~~~~ 95 (124)
T cd02955 82 PLNVFLTPDLKPFF 95 (124)
T ss_pred CEEEEECCCCCEEe
Confidence 99999987766443
No 152
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.22 E-value=6.3e-11 Score=111.78 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=74.3
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE----------------------------eCcccHHHH
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------------------------DADKYKDLA 208 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v----------------------------d~~~~~~l~ 208 (358)
..+++++|.|||+||++|+.+.|.+.++++.++. .++.++.| +++.+..++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 4789999999999999999999999999998863 23444333 334556799
Q ss_pred HhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270 209 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 209 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
+.|+|.++||.+++.++++....+.|..+.++|.++|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999999888766677788999999999999998
No 153
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.22 E-value=5.2e-11 Score=83.71 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=57.0
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHH
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 242 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~ 242 (358)
|.||++||++|+.+.|.++++++++. ..+.+.++| +.+.+.+||+.+.||+++ +|. .. +.|. .+.+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~~--~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-LV--IMGKIPSKEEIK 72 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-EE--EEeccCCHHHHH
Confidence 78999999999999999999999985 457887777 233478899999999999 553 22 6774 4557777
Q ss_pred HHH
Q 018270 243 SFI 245 (358)
Q Consensus 243 ~~i 245 (358)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 154
>PHA02125 thioredoxin-like protein
Probab=99.21 E-value=5.8e-11 Score=83.35 Aligned_cols=70 Identities=29% Similarity=0.497 Sum_probs=54.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEAL 122 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i 122 (358)
++.||++||++|+.+.|.|+++. +.++.||++++.+++++|+|.++||++ .+. ...++.|. .+..++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHH
Confidence 78999999999999999997542 457899999999999999999999998 222 22456663 344555
Q ss_pred HHH
Q 018270 123 AEY 125 (358)
Q Consensus 123 ~~~ 125 (358)
.+-
T Consensus 70 ~~~ 72 (75)
T PHA02125 70 KEK 72 (75)
T ss_pred HHH
Confidence 543
No 155
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.20 E-value=7.1e-11 Score=93.22 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=56.6
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC------CCeEEEEEeCccc-------------------------HH
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKY-------------------------KD 206 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~-------------------------~~ 206 (358)
.+++++|.|||+||++|+++.|.+.++.+.+..+ .++.++.|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 6799999999999999999999999998877532 2577777776532 15
Q ss_pred HHHhcCCCcccEEEEEeCCCc
Q 018270 207 LAEKYGVSGFPTLKFFPKGNK 227 (358)
Q Consensus 207 l~~~~~v~~~Pti~~~~~g~~ 227 (358)
++++|++.++|+.+++...|+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 788899999999999986654
No 156
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.20 E-value=7.2e-11 Score=91.65 Aligned_cols=93 Identities=25% Similarity=0.408 Sum_probs=71.5
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe---------------------Cccc
Q 018270 27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD---------------------CDEH 85 (358)
Q Consensus 27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd---------------------~~~~ 85 (358)
+++.+.+......+++++|.||++||++|+.+.|.+.++++.+. .+.+ .+| ++.+
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSV-ALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEE-EccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 34445555555566999999999999999999999999987742 2222 222 2345
Q ss_pred hhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHH
Q 018270 86 KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 124 (358)
Q Consensus 86 ~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~ 124 (358)
.++++.|+|.++|+++++.+++ ....+.|..+.++|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 6799999999999999999888 6678889999888865
No 157
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.18 E-value=8.4e-11 Score=91.81 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=64.2
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------CccchhhHhhcCcc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDEHKSLCSKYGVQ 95 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i~ 95 (358)
.+++++|+||++||++|+...|.+.++.+.++ +.++.|+ ++.+..+++.|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 57899999999999999999999999987752 4444444 34556788899999
Q ss_pred CCCeEEEccCCCCCcccccCCCCHHHH
Q 018270 96 GYPTIQWFPKGSLEPKKYEGPRSTEAL 122 (358)
Q Consensus 96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i 122 (358)
++|+.+++++++.....+.|..+.+.+
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 999888888777666788898876654
No 158
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.18 E-value=9e-11 Score=82.47 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=58.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEAL 122 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i 122 (358)
-|.||++||++|+.+.|.++++++++. ..+.+..+| +.+.+.+|++.++|++++ +|. . .+.|. .+.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~--~~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-L--VIMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-E--EEEeccCCHHHH
Confidence 378999999999999999999999986 458888888 344578899999999999 443 2 26674 455777
Q ss_pred HHHH
Q 018270 123 AEYV 126 (358)
Q Consensus 123 ~~~i 126 (358)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7765
No 159
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.18 E-value=8.5e-11 Score=103.20 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------chhhHhhcCccCCCeEEEccC-CCC
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPK-GSL 108 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~-~~~ 108 (358)
.+++++|+||++||++|+.+.|.+.+++++++ -.|..+.+|... +..+++++||.++|+++++++ ++.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 46899999999999999999999999999884 234444444321 356889999999999999988 443
Q ss_pred CcccccCCCCHHHHHHHHhccCC
Q 018270 109 EPKKYEGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 109 ~~~~~~g~~~~~~i~~~i~~~~~ 131 (358)
......|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 33345689999999998876543
No 160
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.17 E-value=4.5e-10 Score=92.71 Aligned_cols=103 Identities=19% Similarity=0.402 Sum_probs=81.2
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK------------------- 203 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~------------------- 203 (358)
+..++++.+.--. -.+++++|.||++||++|+...|.+.++++.+.. .++.++.++++.
T Consensus 46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 3345555443322 3578899999999999999999999999999964 346666776542
Q ss_pred ---cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270 204 ---YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 204 ---~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
+..+++.|++.++|+++++.++++....+.|..+.+++.+++.+
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 35788999999999999998777777788999999999999875
No 161
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.17 E-value=1.5e-10 Score=90.89 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=56.2
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCccc------------------------HHHHHhcC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY------------------------KDLAEKYG 212 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~ 212 (358)
.+++++|.||++||++|+.+.|.+.++.+.++.. .++.++.++.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 5789999999999999999999999999988643 2555555554422 35788999
Q ss_pred CCcccEEEEEeCCCc
Q 018270 213 VSGFPTLKFFPKGNK 227 (358)
Q Consensus 213 v~~~Pti~~~~~g~~ 227 (358)
|.++|++++++.+++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999986654
No 162
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.17 E-value=1.7e-10 Score=85.19 Aligned_cols=69 Identities=33% Similarity=0.667 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------------------------HHHHHhcCC
Q 018270 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKYGV 213 (358)
Q Consensus 159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~~v 213 (358)
++++++.||++||++|+...|.+.++.+.++.+.++.++.|..++. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999997556777777777643 268899999
Q ss_pred CcccEEEEEeCCCc
Q 018270 214 SGFPTLKFFPKGNK 227 (358)
Q Consensus 214 ~~~Pti~~~~~g~~ 227 (358)
.++|+++++.++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999987653
No 163
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.16 E-value=1.6e-10 Score=85.31 Aligned_cols=69 Identities=33% Similarity=0.606 Sum_probs=56.1
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-------------------------hhHhhcCc
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-------------------------SLCSKYGV 94 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~~i 94 (358)
+++++|+||++||++|+...|.+.++.+.+++.+++.++.|..+++. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 58999999999999999999999999999985567888888886542 36678899
Q ss_pred cCCCeEEEccCCCC
Q 018270 95 QGYPTIQWFPKGSL 108 (358)
Q Consensus 95 ~~~P~l~~~~~~~~ 108 (358)
.++|++++++++|.
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999987763
No 164
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.16 E-value=2.4e-10 Score=88.65 Aligned_cols=93 Identities=28% Similarity=0.391 Sum_probs=70.8
Q ss_pred EcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC---------------------cc
Q 018270 145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------DK 203 (358)
Q Consensus 145 ~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~---------------------~~ 203 (358)
.++++.+.... ..+++++|.||++||++|+.+.|.+.++++.+ .+..+.+|- +.
T Consensus 7 ~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 34444554444 35689999999999999999999999998874 233333332 24
Q ss_pred cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHH
Q 018270 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 243 (358)
Q Consensus 204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~ 243 (358)
+..++++|+|.++|+++++.+++ ....+.|..+.+++.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 45799999999999999999887 6777888888888764
No 165
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.15 E-value=2.5e-10 Score=95.13 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-----------------------HHHHhcCCC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----------------------DLAEKYGVS 214 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~v~ 214 (358)
.+++++|.||++||++|+...|.+.++++. ++.++.|+.+++. .+...|++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 688999999999999999999999988652 3556666644321 345578999
Q ss_pred cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270 215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 249 (358)
++|+.+++...++....+.|..+.+++.++|...+
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 99988888766677788899999999988887654
No 166
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.15 E-value=2.2e-10 Score=89.99 Aligned_cols=71 Identities=20% Similarity=0.418 Sum_probs=57.2
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccc------------------------hhhHhhcC
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH------------------------KSLCSKYG 93 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~ 93 (358)
.+++++|+||++||++|+...|.+.++.+++.+. ..+.++.|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 5789999999999999999999999999888643 2455555555432 35778999
Q ss_pred ccCCCeEEEccCCCCC
Q 018270 94 VQGYPTIQWFPKGSLE 109 (358)
Q Consensus 94 i~~~P~l~~~~~~~~~ 109 (358)
|.++|+++++++++..
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 9999999999877654
No 167
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.14 E-value=1.5e-10 Score=79.51 Aligned_cols=57 Identities=26% Similarity=0.539 Sum_probs=51.4
Q ss_pred EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
-++.|+++||++|+.+.+.+++++... +++.+..+|.+++++++++||+.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999998764 468999999999999999999999999865
No 168
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.14 E-value=2.1e-10 Score=90.51 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=57.5
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC------CceEEEEEeCccc-------------------------hh
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA------KSVLIGKVDCDEH-------------------------KS 87 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~------~~v~~~~vd~~~~-------------------------~~ 87 (358)
++++++|+|||+||++|++..|.+.++.+.+++. ..+.++.|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5799999999999999999999999998877532 2577777776532 14
Q ss_pred hHhhcCccCCCeEEEccCCCCC
Q 018270 88 LCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 88 l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
+++.|++.++|++++++++|..
T Consensus 104 l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcE
Confidence 6778899999999999987754
No 169
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.13 E-value=2.1e-10 Score=94.56 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=69.8
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------CccchhhHhhcCc
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDEHKSLCSKYGV 94 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i 94 (358)
.++++++|+||++||++|+...|.+.++.+. .+.++.|+ ++.+.++++.|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 4679999999999999999999999888753 23344443 3344567788999
Q ss_pred cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270 95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
.++|+.+++++++.....+.|..+.+++.+++++..
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 999998888877766677889999999999998764
No 170
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.13 E-value=2.6e-10 Score=89.02 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-----------------------CcccHHHHHhcCCC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADKYKDLAEKYGVS 214 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~v~ 214 (358)
.+++++|.||++||++|+...|.+.++++.+ ++.++.|+ ++....+++.|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 5789999999999999999999999998875 24444444 33455788899999
Q ss_pred cccEEEEEeCCCcceeeecCCCCHHHH
Q 018270 215 GFPTLKFFPKGNKDGEEYGGGRDLEDF 241 (358)
Q Consensus 215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l 241 (358)
++|+.+++.++++....+.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 999888877666677788898877654
No 171
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.13 E-value=2.1e-10 Score=90.12 Aligned_cols=70 Identities=23% Similarity=0.474 Sum_probs=55.9
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCccc-------------------------HHHHHhc
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEKY 211 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~ 211 (358)
.+++++|.||++||++|+...|.+.++++.++.+ .++.++.|+.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5789999999999999999999999999988744 3555555554432 2466789
Q ss_pred CCCcccEEEEEeCCCc
Q 018270 212 GVSGFPTLKFFPKGNK 227 (358)
Q Consensus 212 ~v~~~Pti~~~~~g~~ 227 (358)
+|.++|+++++..+++
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999976654
No 172
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.12 E-value=5.3e-10 Score=85.43 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=76.8
Q ss_pred HhcCCCcEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccC-CCCC
Q 018270 36 EVGQDRGALVEFYAPWCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPK-GSLE 109 (358)
Q Consensus 36 ~~~~~~~~lv~fya~~c~~C~~~~~~-~--~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~-~~~~ 109 (358)
+.+++++++|+|+++||++|+.+... | .++.+.++ ....+..+|.+ +...++..|++.++|+++++.+ ++..
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 34778999999999999999999774 4 56777776 45777788886 5678999999999999999988 6766
Q ss_pred cccccCCCCHHHHHHHHhcc
Q 018270 110 PKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~i~~~ 129 (358)
.....|..+++++...+.+.
T Consensus 91 l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHH
Confidence 67889999999999888764
No 173
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.12 E-value=3.2e-10 Score=93.41 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=69.5
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC-----------------------cccHHHHHhcCC
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV 213 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~v 213 (358)
..+++++|.||++||++|+.+.|.++++++. ++.++.|+. |.+..+.+.|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3678999999999999999999999988753 244444443 223356778999
Q ss_pred CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
.++|+.+++.++++....+.|..+.+++.+++++.++
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9999888776656677788899999999999988653
No 174
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.11 E-value=2.6e-10 Score=86.91 Aligned_cols=76 Identities=30% Similarity=0.592 Sum_probs=65.4
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----------------------hhhHhhcCcc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----------------------KSLCSKYGVQ 95 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~ 95 (358)
.+++++|.||++||++|+...+.+.++.+.+. ...+.++.|+++.+ ..+++.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 47899999999999999999999999999986 35689999999875 7789999999
Q ss_pred CCCeEEEccCCCCCcccccC
Q 018270 96 GYPTIQWFPKGSLEPKKYEG 115 (358)
Q Consensus 96 ~~P~l~~~~~~~~~~~~~~g 115 (358)
++|+++++++++.....+.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 99999999887765555544
No 175
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.10 E-value=2.3e-09 Score=82.29 Aligned_cols=106 Identities=14% Similarity=0.248 Sum_probs=85.7
Q ss_pred EcCcccHHHHHhcCCCcEEEEEcC--CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270 145 VLTADNFDEIVLDKSKDVLVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222 (358)
Q Consensus 145 ~l~~~~f~~~~~~~~~~v~v~f~a--~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 222 (358)
.++..+++.++ ......+++|-. ..++.+....-++.+++++|. ..++.+++||++.+++++.+|||.++||+++|
T Consensus 21 ~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 21 PVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 46778888888 444444444432 236777778889999999994 34599999999999999999999999999999
Q ss_pred eCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270 223 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 253 (358)
Q Consensus 223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (358)
++|+ ......|.++.+++.+||.+.++...
T Consensus 99 kdGk-~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 99 TGGN-YRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred ECCE-EEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9984 56678899999999999999877653
No 176
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.10 E-value=3.6e-10 Score=88.81 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=57.2
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccc-------------------------hhhHhhc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH-------------------------KSLCSKY 92 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~ 92 (358)
.+++++|.||++||++|+...|.+.++++.+++. ..+.+..|+.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4799999999999999999999999999988753 3566666665543 2456779
Q ss_pred CccCCCeEEEccCCCCC
Q 018270 93 GVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 93 ~i~~~P~l~~~~~~~~~ 109 (358)
+|.++|+++++++++..
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 99999999999877644
No 177
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.10 E-value=2.6e-10 Score=78.20 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=51.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
-++.|+++||++|+.+.+.++++++.. +.+.+..+|.++++++++++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999998754 569999999999999999999999999876
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.08 E-value=8.3e-09 Score=99.92 Aligned_cols=183 Identities=13% Similarity=0.140 Sum_probs=134.0
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
-.+++-+.++.+.|+.|.++...++++++.- +++.+-..+.. ...|++.++.++....++|.|...
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLS---DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCc
Confidence 3456656666668999999999999998864 45655332211 358999998766555689988888
Q ss_pred HHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEE
Q 018270 119 TEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198 (358)
Q Consensus 119 ~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~ 198 (358)
-.++..||....+..-. -..|+.+..+.+-.-.+...+-.|+++.|++|......+.+++... +++..-.
T Consensus 83 g~Ef~s~i~~i~~~~~~-------~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~ 152 (517)
T PRK15317 83 GHEFTSLVLALLQVGGH-------PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN---PNITHTM 152 (517)
T ss_pred cHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEE
Confidence 78888887765432111 1234555545444223444588999999999999999999998853 5888999
Q ss_pred EeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 199 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
+|...+++++++|++.++|++++ +|. ..+.|..+.+++.+.+.+..+
T Consensus 153 id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 153 IDGALFQDEVEARNIMAVPTVFL--NGE---EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred EEchhCHhHHHhcCCcccCEEEE--CCc---EEEecCCCHHHHHHHHhcccc
Confidence 99999999999999999999865 332 457899999999999876544
No 179
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.08 E-value=6.6e-10 Score=103.98 Aligned_cols=103 Identities=20% Similarity=0.392 Sum_probs=83.2
Q ss_pred EEcChh-hHHHHhcCCC--cEEEEEECCCChhhhhhhHHHH-HHHHHhhcCCceEEEEEeCccc----hhhHhhcCccCC
Q 018270 26 VVLTED-NFEKEVGQDR--GALVEFYAPWCGHCKKLAPEYE-KLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGY 97 (358)
Q Consensus 26 ~~l~~~-~f~~~~~~~~--~~lv~fya~~c~~C~~~~~~~~-~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~ 97 (358)
..++.. ..++.+.+++ |++|+|||+||-.|+.+.+..- +.....+ ..++.+.++|.+++ .++-++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 555555 7788886666 9999999999999999998753 3322222 26799999999865 567899999999
Q ss_pred CeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
|++++|++++..+....|..+.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999998777767799999999999999764
No 180
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.08 E-value=1.3e-09 Score=88.61 Aligned_cols=84 Identities=14% Similarity=0.232 Sum_probs=66.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------------hhhHhhcCc--cCCCeEEEccCCCC
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------KSLCSKYGV--QGYPTIQWFPKGSL 108 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~P~l~~~~~~~~ 108 (358)
+|.||++||++|++..|.+.+++++++ +.+..|+.+.. ..+.+.|++ .++|+.++++.++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 788999999999999999999999984 44444544422 236678885 69999999988886
Q ss_pred Cc-ccccCCCCHHHHHHHHhccCC
Q 018270 109 EP-KKYEGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 109 ~~-~~~~g~~~~~~i~~~i~~~~~ 131 (358)
.. ..+.|..+.+++.+.+.+...
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHh
Confidence 63 368899999999888877654
No 181
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.07 E-value=9.6e-10 Score=79.54 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 238 (358)
Q Consensus 159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~ 238 (358)
+..-+..|+++||++|+...+.+++++..+ +++.+..+|.++.++++++|||.++||+++ +|. ..+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~---~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~---~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN---PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE---LFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC---CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE---EEEeCCCCH
Confidence 344588899999999999999999999876 479999999999999999999999999975 452 344576666
Q ss_pred HHHH
Q 018270 239 EDFV 242 (358)
Q Consensus 239 ~~l~ 242 (358)
++++
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 6654
No 182
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.6e-09 Score=81.40 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHHHhhhccC-CCeEEcCh-hhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCce
Q 018270 1 MERYQIWLALGTLTLFFVSALA-DDVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSV 75 (358)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~-~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v 75 (358)
|+|.++++++++++++++..+. .....++- ++..++...++..++.|-++.|++|.++...+ .++.+.+. +.+
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf 78 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHF 78 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCe
Confidence 4554444444444444333322 22222221 33444557789999999999999999998877 45555565 446
Q ss_pred EEEEEeCcc----------------chhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270 76 LIGKVDCDE----------------HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 76 ~~~~vd~~~----------------~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
.++.+|... ..++++.|+++++|++++|+..|......+|...++++...+.-
T Consensus 79 ~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 79 SAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred EEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 666666532 24899999999999999999888777788999999988866553
No 183
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.05 E-value=9.2e-10 Score=83.83 Aligned_cols=76 Identities=34% Similarity=0.647 Sum_probs=65.4
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCCC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGVS 214 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~ 214 (358)
.++++++.||++||++|+...+.+.++...+. +.++.++.|+.+.. ..+.+.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 47899999999999999999999999999986 45788888888875 6789999999
Q ss_pred cccEEEEEeCCCcceeeecC
Q 018270 215 GFPTLKFFPKGNKDGEEYGG 234 (358)
Q Consensus 215 ~~Pti~~~~~g~~~~~~~~g 234 (358)
++|+++++.++++....+.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 99999999877666666554
No 184
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.05 E-value=1.1e-09 Score=84.12 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=56.4
Q ss_pred HHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270 33 FEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 33 f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
+..+.+++++++|.|+++||++|+.+.... .++.+..+ .++.++.++.+....-....+ .++||++|+++++..
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~v 92 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCC
Confidence 344447899999999999999999999875 45555554 346666676652211112344 689999999888766
Q ss_pred cccccCCC
Q 018270 110 PKKYEGPR 117 (358)
Q Consensus 110 ~~~~~g~~ 117 (358)
..+..|..
T Consensus 93 i~~i~Gy~ 100 (130)
T cd02960 93 RADITGRY 100 (130)
T ss_pred cccccccc
Confidence 55555543
No 185
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.9e-09 Score=111.60 Aligned_cols=92 Identities=21% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC---------------------------cccHHHHHh
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEK 210 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~ 210 (358)
.+++++|+|||+||++|+...|.++++++.|+. .++.++.|.. +....+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 689999999999999999999999999999963 3577776631 123467789
Q ss_pred cCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270 211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 211 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
|+|.++|+++++...++...++.|....+.+.+++...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 9999999999997666677788999999999999998754
No 186
>smart00594 UAS UAS domain.
Probab=99.01 E-value=3.3e-09 Score=81.97 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=71.8
Q ss_pred hcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccCCC----
Q 018270 37 VGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGS---- 107 (358)
Q Consensus 37 ~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~~~---- 107 (358)
.+++|+++|+|+++||++|+.+.... .++.+.++ .++.+..+|.+ +..+++.+|++.++|++.++.+.+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 37789999999999999999998764 56667776 45777777765 557799999999999999997665
Q ss_pred -CCcccccCCCCHHHHHHHHh
Q 018270 108 -LEPKKYEGPRSTEALAEYVN 127 (358)
Q Consensus 108 -~~~~~~~g~~~~~~i~~~i~ 127 (358)
....+..|..+++++..+++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred EEEeccccCCCCHHHHHHhhC
Confidence 12457789999999988763
No 187
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.4e-10 Score=89.55 Aligned_cols=88 Identities=22% Similarity=0.449 Sum_probs=74.9
Q ss_pred cCCCeEEc-ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--
Q 018270 21 LADDVVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ-- 95 (358)
Q Consensus 21 ~~~~v~~l-~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-- 95 (358)
....+.-+ +.+.+++.+ +....|+|.||+.|.+.|+.+.|.|.++..+|+. +.+.||+||...-++.+.+|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccC
Confidence 45567777 556666666 4556799999999999999999999999999975 57999999999999999999986
Q ss_pred ----CCCeEEEccCCCCC
Q 018270 96 ----GYPTIQWFPKGSLE 109 (358)
Q Consensus 96 ----~~P~l~~~~~~~~~ 109 (358)
..||+++|.+|.+.
T Consensus 201 ~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEV 218 (265)
T ss_pred cccccCCeEEEEccchhh
Confidence 77999999988754
No 188
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.99 E-value=3.4e-09 Score=86.17 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=66.7
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------cHHHHHhcCC--CcccEEEEEeCCCc
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------YKDLAEKYGV--SGFPTLKFFPKGNK 227 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~v--~~~Pti~~~~~g~~ 227 (358)
+|.||++||++|++..|.+.++++.+. +.+.-|+.+. ...+.+.|++ .++|+.++++..++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999983 4444444331 2346778995 69999999987776
Q ss_pred ce-eeecCCCCHHHHHHHHHHhcCC
Q 018270 228 DG-EEYGGGRDLEDFVSFINEKCGT 251 (358)
Q Consensus 228 ~~-~~~~g~~~~~~l~~~i~~~~~~ 251 (358)
.. ..+.|..+.+++.+.|.+.+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 54 4689999999999988877654
No 189
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.98 E-value=1.9e-10 Score=94.60 Aligned_cols=109 Identities=30% Similarity=0.571 Sum_probs=95.2
Q ss_pred CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~ 220 (358)
..++.++.+|+..++ ...+++.|++|||+.|+...|.|+..|.--. +-.+.++.||.+.++.|.-+|-+...|||+
T Consensus 24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~-dL~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSL-DLGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccC-CCceeEEEEEEEeccccceeeEEEecceEE
Confidence 367889999999987 5678999999999999999999999988654 357999999999999999999999999999
Q ss_pred EEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCC
Q 018270 221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 255 (358)
Q Consensus 221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 255 (358)
-..+| +-.+|.|.|+..++++|+...--...++
T Consensus 100 HvkDG--eFrrysgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 100 HVKDG--EFRRYSGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred Eeecc--ccccccCcccchhHHHHHHhhhhhccCC
Confidence 99988 6688999999999999998765544433
No 190
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.97 E-value=1.6e-09 Score=77.52 Aligned_cols=71 Identities=30% Similarity=0.544 Sum_probs=55.2
Q ss_pred hHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccC
Q 018270 32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 105 (358)
Q Consensus 32 ~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~ 105 (358)
.+.++.+++++++|+|+++||++|+.+...+ .++.+.+. .++.++.+|.+.........+ .++|+++++++
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 3445558899999999999999999999988 56666565 668999999987665433222 77999999864
No 191
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.95 E-value=5.3e-09 Score=80.32 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=88.9
Q ss_pred CeEEcChhhHHHHhcCCCcEEEEEECC--CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270 24 DVVVLTEDNFEKEVGQDRGALVEFYAP--WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 24 ~v~~l~~~~f~~~~~~~~~~lv~fya~--~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 101 (358)
....++..+++..+......+|.|-.+ -++.+....-.+.+++++|.+ .++.+++||.+++++++.+|||.++||++
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 455667788999887766666666543 267788888899999999952 35999999999999999999999999999
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNNEGGT 132 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~ 132 (358)
+|++|... ....|.++.+++.++|.+....
T Consensus 97 ~FkdGk~v-~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 97 VFTGGNYR-GVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEECCEEE-EEEeCcCCHHHHHHHHHHHhcC
Confidence 99998754 7888999999999999987653
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.95 E-value=6.5e-08 Score=93.65 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=131.8
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~ 119 (358)
.+++-+.++.+.|+.|.++...++++++.- +++.+-..+.+ ....|++.++.++....++|.|...-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g 84 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLS---DKISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGG 84 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhC---CCeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCc
Confidence 455655555557999999999999988864 45665433321 23569999987665556899888877
Q ss_pred HHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE
Q 018270 120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199 (358)
Q Consensus 120 ~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v 199 (358)
.++..||....+..-. -..|+.+..+.+-.-.+...+-.|.++.|++|......+.+++... +++..-.+
T Consensus 85 ~Ef~s~i~~i~~~~~~-------~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~i 154 (515)
T TIGR03140 85 HEFTSLVLAILQVGGH-------GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN---PNISHTMI 154 (515)
T ss_pred HHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEE
Confidence 8888887764432111 1235555555544223445588999999999999988998888864 57888889
Q ss_pred eCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 200 d~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 249 (358)
|....++++++|++.++|++++ +|. ..+.|..+.+++.+.+.+..
T Consensus 155 d~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 155 DGALFQDEVEALGIQGVPAVFL--NGE---EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred EchhCHHHHHhcCCcccCEEEE--CCc---EEEecCCCHHHHHHHHhhcc
Confidence 9999999999999999999876 332 45789999999988887653
No 193
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.94 E-value=4.2e-09 Score=76.20 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=62.1
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~ 119 (358)
+..-+..|+++||++|....+.+.++++.+ +++.+..+|.++.++++++|||.++|++++ +|. ..+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~---~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~---~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN---PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE---LFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC---CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE---EEEeCCCCH
Confidence 344678899999999999999999999876 569999999999999999999999999975 443 345676665
Q ss_pred HHHH
Q 018270 120 EALA 123 (358)
Q Consensus 120 ~~i~ 123 (358)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 5543
No 194
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.94 E-value=6.7e-09 Score=85.00 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=64.4
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEE------EEEeCcc---------------------------
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI------GKVDCDE--------------------------- 84 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~------~~vd~~~--------------------------- 84 (358)
-.+++.+|.|||.||++|+..+|.+.++.++ .+.+ ..||.++
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 3489999999999999999999999999653 1222 3333332
Q ss_pred --chhhHhhcCccCCCeE-EEccCCCCCcccccCCCCHHHHHHHH
Q 018270 85 --HKSLCSKYGVQGYPTI-QWFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 85 --~~~l~~~~~i~~~P~l-~~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
+..+...|++.+.|+. ++++..|.....+.|..+.+++.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2345678899999888 78888888778889999888877643
No 195
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.94 E-value=1.2e-08 Score=77.93 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=74.1
Q ss_pred cCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeC-CCccee
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPK-GNKDGE 230 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~-g~~~~~ 230 (358)
..+++++|.|+++||++|+.+.. .|. ++.+.+. .++++..+|.+ +...++..|++.++|+++++.+ .+....
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 56899999999999999999855 343 3444443 46888888887 5668999999999999999987 566778
Q ss_pred eecCCCCHHHHHHHHHHhc
Q 018270 231 EYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 231 ~~~g~~~~~~l~~~i~~~~ 249 (358)
+..|..+++++...|++..
T Consensus 93 ~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 93 VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 8999999999999887653
No 196
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.94 E-value=4e-09 Score=80.55 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE-e--CcccHHHHHhcCCCcccE
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-D--ADKYKDLAEKYGVSGFPT 218 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v-d--~~~~~~l~~~~~v~~~Pt 218 (358)
.+++++|.||++||++|+...|.++++++.+.. ++.++.+ + .++...+++++++..+|+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~ 81 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPY 81 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcE
Confidence 478999999999999999999999999988753 3444444 2 223334455555544554
No 197
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.91 E-value=5.2e-09 Score=81.52 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=59.3
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------------cchhhHhh
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------------EHKSLCSK 91 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~ 91 (358)
++++++|+||++||++|....|.+.++.+++++ ..+.++.|+.. .+..+++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 568999999999999999999999999999975 35777766541 12245667
Q ss_pred cCccCCCeEEEccCCCCCcccccC
Q 018270 92 YGVQGYPTIQWFPKGSLEPKKYEG 115 (358)
Q Consensus 92 ~~i~~~P~l~~~~~~~~~~~~~~g 115 (358)
|++.++|+.+++++++.....+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 888899999999877765555554
No 198
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.90 E-value=8.6e-09 Score=80.27 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=60.8
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----c----------------------cHHHHHh
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----K----------------------YKDLAEK 210 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----~----------------------~~~l~~~ 210 (358)
.+++++|.||++||++|....|.+.++.+.++. .++.++.|..+ . ...+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 568999999999999999999999999999974 45777666431 1 1257778
Q ss_pred cCCCcccEEEEEeCCCcceeeecCC
Q 018270 211 YGVSGFPTLKFFPKGNKDGEEYGGG 235 (358)
Q Consensus 211 ~~v~~~Pti~~~~~g~~~~~~~~g~ 235 (358)
|++.++|+.+++..+++....+.|+
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 9999999999997666666666653
No 199
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=4.7e-09 Score=108.76 Aligned_cols=90 Identities=19% Similarity=0.364 Sum_probs=74.4
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC---------------------------ccchhhHhh
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------------------------DEHKSLCSK 91 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~ 91 (358)
++++++|+|||+||++|+...|.+.++.+++++. .+.++.|.+ +.+.++.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 5799999999999999999999999999999753 366666632 223457789
Q ss_pred cCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 92 YGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 92 ~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
|+|.++|+++++++++....++.|....+.+.++++..
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999999999987776767888999999999888764
No 200
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.87 E-value=6.6e-10 Score=91.52 Aligned_cols=103 Identities=24% Similarity=0.538 Sum_probs=91.0
Q ss_pred CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~ 101 (358)
...+..++++|..+.++ .-|+++|+|||||.|+...|+|+..+.--.+ -.|.++.||...++.+.-+|-+...|+|+
T Consensus 23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEE
Confidence 34788999999999884 3599999999999999999999999876443 47999999999999999999999999999
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
-..+|.- -+|+|.|+.+++..|+..+
T Consensus 100 HvkDGeF--rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 100 HVKDGEF--RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred Eeecccc--ccccCcccchhHHHHHHhh
Confidence 9988854 5899999999999999754
No 201
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.85 E-value=5.7e-09 Score=97.81 Aligned_cols=103 Identities=25% Similarity=0.460 Sum_probs=79.7
Q ss_pred EcCcc-cHHHHHh-cCCCcEEEEEcCCCCcccchhhhh-HHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCCCccc
Q 018270 145 VLTAD-NFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPT-YEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFP 217 (358)
Q Consensus 145 ~l~~~-~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~-~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~P 217 (358)
.++.. ..++.+. +++++|+++|||+||..||.+.+. +.+....++ -.+++..+.|.+++ .++.++||+-+.|
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 34433 5666652 233599999999999999999773 333333333 35899999998854 4789999999999
Q ss_pred EEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
++++|+.+++++....|-.+++.+.+++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999997777777789999999999999764
No 202
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.85 E-value=4.9e-09 Score=91.38 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=95.7
Q ss_pred CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchh------hhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC
Q 018270 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNL------APTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 214 (358)
Q Consensus 141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~------~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~ 214 (358)
..+..||.+||.+.+ .+....+|.|+.|-- ..+.. ...+-+|+.+...+.++.|+.||...+..+++++|+.
T Consensus 34 DRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKRAL-KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHHHH-HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHHHH-HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 458899999999988 566667777777752 22322 2334566666555678999999999999999999999
Q ss_pred cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCCCCccccccchhhH--HHHHHHHHhcchhhHHHHHHHHH
Q 018270 215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASL--DALVKEFVAASGDEKKAVFSKIE 292 (358)
Q Consensus 215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~ 292 (358)
..+++++|.+| ..+.|.|.++++.|++||.+.........++.....+.. .+ +..+..|+++.++ +.+++.+
T Consensus 112 E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe-~ied~~klIGyFk~~~s---~~yk~Fe 185 (383)
T PF01216_consen 112 EEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFE-RIEDDIKLIGYFKSEDS---EHYKEFE 185 (383)
T ss_dssp STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHH-H--SS-EEEEE-SSTTS---HHHHHHH
T ss_pred ccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhh-hcccceeEEEEeCCCCc---HHHHHHH
Confidence 99999999998 679999999999999999999886654332222221111 11 1112234444332 3566667
Q ss_pred HHHhhhhc
Q 018270 293 RGVEVLEG 300 (358)
Q Consensus 293 ~~~~~~~~ 300 (358)
+++..+.+
T Consensus 186 eAAe~F~p 193 (383)
T PF01216_consen 186 EAAEHFQP 193 (383)
T ss_dssp HHHHHCTT
T ss_pred HHHHhhcC
Confidence 77777653
No 203
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.84 E-value=6.2e-09 Score=79.53 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=44.4
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEE---eCccchhhHhhcCccCCCeE
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV---DCDEHKSLCSKYGVQGYPTI 100 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~v---d~~~~~~l~~~~~i~~~P~l 100 (358)
++++++|.||++||++|+...|.+.++++.++ +.+.++.+ +.++..++++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~--~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA--DWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhc--CCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 47899999999999999999999999988875 33544444 22234456667777666654
No 204
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.82 E-value=2.4e-08 Score=79.92 Aligned_cols=79 Identities=29% Similarity=0.485 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCC-
Q 018270 158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVS- 214 (358)
Q Consensus 158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~- 214 (358)
.+++++|.||++ ||++|+...|.+.++++.++.. ++.++.|..+.+ ..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 688999999999 9999999999999999987643 455555544422 2789999998
Q ss_pred --------cccEEEEEeCCCcceeeecCCCC
Q 018270 215 --------GFPTLKFFPKGNKDGEEYGGGRD 237 (358)
Q Consensus 215 --------~~Pti~~~~~g~~~~~~~~g~~~ 237 (358)
++|+++++..+++....+.|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99999999888876666666544
No 205
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.80 E-value=3.1e-08 Score=83.21 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=46.0
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------ccHHHHHhcCCCcccE
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLAEKYGVSGFPT 218 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~v~~~Pt 218 (358)
.+++++|.||++||++|+...|.+.++.+.++. .++.++.|+++ +...+++++++. ||.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpv 107 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNF 107 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-cee
Confidence 578999999999999999999999999999964 35777778653 233566676663 553
No 206
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.78 E-value=1.9e-08 Score=77.28 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=53.6
Q ss_pred cHHHHH---hcCCCcEEEEEcCCCCcccchhhhhHH---HHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEe
Q 018270 150 NFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 223 (358)
Q Consensus 150 ~f~~~~---~~~~~~v~v~f~a~~C~~c~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~ 223 (358)
+|++.+ ...+++++|.|++.||++|+.+...+- ++.+.. +.+++.+.++.+....-....+ .++||++|+.
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l--~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld 87 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA--QEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVD 87 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH--HhCeEEEEEEeccCCCCcCccC-cccCeEEEEC
Confidence 444433 367899999999999999999976432 233333 2357777777653211111234 5799999998
Q ss_pred CCCcceeeecC
Q 018270 224 KGNKDGEEYGG 234 (358)
Q Consensus 224 ~g~~~~~~~~g 234 (358)
+.++...+..|
T Consensus 88 ~~g~vi~~i~G 98 (130)
T cd02960 88 PSLTVRADITG 98 (130)
T ss_pred CCCCCcccccc
Confidence 77766655555
No 207
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.78 E-value=1.7e-07 Score=69.70 Aligned_cols=109 Identities=23% Similarity=0.435 Sum_probs=86.4
Q ss_pred CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHH-HHhhcCCceEEEEEeCc-----cchhhHhhcCc--
Q 018270 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLIGKVDCD-----EHKSLCSKYGV-- 94 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i-- 94 (358)
....+|+.-+|+.++...+.+||.|=... |--+-+..|.+++ +.....+++.++.|... ++.+|+++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45689999999999999999999997554 6778889999999 66656678999999775 46789999999
Q ss_pred cCCCeEEEccCCCCCcccc--cCCCCHHHHHHHHhccCCCC
Q 018270 95 QGYPTIQWFPKGSLEPKKY--EGPRSTEALAEYVNNEGGTN 133 (358)
Q Consensus 95 ~~~P~l~~~~~~~~~~~~~--~g~~~~~~i~~~i~~~~~~~ 133 (358)
..||.+++|..+...+..| .|..+.+.|..|+.++++..
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence 5799999999777778888 89999999999999887643
No 208
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.78 E-value=3.8e-08 Score=80.62 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=63.9
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHH-hcCCCCeEEEEEeCcc-----------------------------cHHH
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLDADK-----------------------------YKDL 207 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~-~~~~~~v~~~~vd~~~-----------------------------~~~l 207 (358)
.++.++|.|||+||++|+..+|.+.+++.. +..+.--....||.++ ...+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 589999999999999999999999999753 3210000013333332 2246
Q ss_pred HHhcCCCcccEE-EEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 208 AEKYGVSGFPTL-KFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 208 ~~~~~v~~~Pti-~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
...||+.++|+- ++++..|+....+.|..+.+++.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 778999999777 78887777888899999888876643
No 209
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.76 E-value=3.5e-08 Score=78.93 Aligned_cols=80 Identities=28% Similarity=0.493 Sum_probs=62.2
Q ss_pred cCCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCcc
Q 018270 38 GQDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQ 95 (358)
Q Consensus 38 ~~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~ 95 (358)
-++++++|.||+. |||+|+...|.+.++.+.++.. .+.++.|..+. +..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 4689999999999 9999999999999999887643 35555554432 23578889988
Q ss_pred ---------CCCeEEEccCCCCCcccccCCCC
Q 018270 96 ---------GYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 96 ---------~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
++|+++++..++.......|..+
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99999999888866555556544
No 210
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.75 E-value=8.9e-08 Score=81.93 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--------c---cHHHH-HhcCC------------
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------K---YKDLA-EKYGV------------ 213 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--------~---~~~l~-~~~~v------------ 213 (358)
.+++++|.||++||++|....|.+.++.+.++. .++.++.|+++ + ...++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 568999999999999999999999999999974 35777777753 1 12232 23332
Q ss_pred ----------------------CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270 214 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 214 ----------------------~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 249 (358)
...|+.+++..+|+...+|.|..+.+++.+.|++.+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 123677777766677777888888888888777654
No 211
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.74 E-value=4.9e-08 Score=83.52 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhH-hhcCc------------
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLC-SKYGV------------ 94 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~i------------ 94 (358)
.+++++|.||++||++|....|.+.++.+++++. .+.++.|+++. + .+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 4689999999999999999999999999999753 47888888631 1 2222 23222
Q ss_pred ----------------------cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270 95 ----------------------QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 95 ----------------------~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
...|+.++++++|....+|.|..+.+++.+.|+..+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 224777888777777778888888888888777653
No 212
>smart00594 UAS UAS domain.
Probab=98.74 E-value=1.1e-07 Score=73.53 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=66.7
Q ss_pred cCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCCC-c---
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGN-K--- 227 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~-~--- 227 (358)
..++.++|.|+++||++|+.+.. .|. ++.+.+. .++++..+|.+ +...++.+|+++++|+++++.+.+ .
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 56789999999999999999854 232 2333342 36888888866 556799999999999999996554 1
Q ss_pred -ceeeecCCCCHHHHHHHH
Q 018270 228 -DGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 228 -~~~~~~g~~~~~~l~~~i 245 (358)
...+..|..++++|+.++
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 345678999999999876
No 213
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.71 E-value=4.4e-08 Score=82.29 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=65.2
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------cchhhHhhcCcc------------
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------EHKSLCSKYGVQ------------ 95 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~------------ 95 (358)
.+++++|.|||+||++|+...|.+.++.+++++ ..+.++.|+++ +...+++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 478999999999999999999999999999975 34788888763 123345555431
Q ss_pred ------------------------CCC---eEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270 96 ------------------------GYP---TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 96 ------------------------~~P---~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 130 (358)
.+| +.++++.+|....++.|..+.+.+.+.|....
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 111 45566666655566777777777777777653
No 214
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.71 E-value=2.8e-08 Score=70.97 Aligned_cols=66 Identities=32% Similarity=0.557 Sum_probs=48.9
Q ss_pred hcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270 156 LDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 224 (358)
Q Consensus 156 ~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~ 224 (358)
...+++++|.|+++||++|+.+...+ .++.+.+. .+++.+.+|.++........+ .++|+++++.+
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 36789999999999999999997655 23444332 478999999986654433222 67999999864
No 215
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.2e-08 Score=81.42 Aligned_cols=88 Identities=24% Similarity=0.527 Sum_probs=73.2
Q ss_pred CCCCceEc-CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC--
Q 018270 139 VPSNVVVL-TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS-- 214 (358)
Q Consensus 139 ~~~~v~~l-~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~-- 214 (358)
-|..++.. +.+.+++.+. +....++|.|+|.|.+.|....|.|.+|+.+|. .+.+.|++||+...++.+.+|+|+
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn-~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN-NNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC-CCCCcccceeeccCcChHHheeeccC
Confidence 45566777 4555666552 344678999999999999999999999999996 568999999999999999999986
Q ss_pred ----cccEEEEEeCCCc
Q 018270 215 ----GFPTLKFFPKGNK 227 (358)
Q Consensus 215 ----~~Pti~~~~~g~~ 227 (358)
..||+.+|.+|..
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 4899999998854
No 216
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.68 E-value=1.1e-07 Score=79.37 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=61.4
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC------------------ccchhhHhhcCccCCCeE
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC------------------DEHKSLCSKYGVQGYPTI 100 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~i~~~P~l 100 (358)
.+++++|+||++||++|+...|.+.++.+... .++.++..|. ....++++.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 67899999999999999999999999887642 2344433211 013467788999999999
Q ss_pred EEccCCCCCcccccCC-CCHHHHHHHHhc
Q 018270 101 QWFPKGSLEPKKYEGP-RSTEALAEYVNN 128 (358)
Q Consensus 101 ~~~~~~~~~~~~~~g~-~~~~~i~~~i~~ 128 (358)
+++++++.. .+.|. ...+.+.+.++.
T Consensus 151 ~lID~~G~I--~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKI--RAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeE--EEccCCCCHHHHHHHHHH
Confidence 999877754 34454 345666666654
No 217
>PLN02412 probable glutathione peroxidase
Probab=98.67 E-value=2.1e-07 Score=76.03 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=37.8
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~ 201 (358)
.+++++|.||++||++|+...|.+.++.+.|+.. ++.++.|.+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~ 70 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPC 70 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecc
Confidence 5689999999999999999999999999999743 588887775
No 218
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.1e-07 Score=76.72 Aligned_cols=178 Identities=17% Similarity=0.326 Sum_probs=113.9
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270 30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
.+.| .....+..+++||++||..|.++...++.+++.. .++.+++++.++.++++..+.+...|..+++..+...
T Consensus 9 ~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v 83 (227)
T KOG0911|consen 9 QEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV 83 (227)
T ss_pred HHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh
Confidence 3445 3357888999999999999999999999999988 6689999999999999999999999999999666543
Q ss_pred cccccCCCCHHHHHHH---HhccCCCCccccCCCCCceEc-------CcccHHHHHhcCCCcEEEEE----cCCCCcccc
Q 018270 110 PKKYEGPRSTEALAEY---VNNEGGTNVKIAAVPSNVVVL-------TADNFDEIVLDKSKDVLVEF----YAPWCGHCK 175 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~---i~~~~~~~~~~~~~~~~v~~l-------~~~~f~~~~~~~~~~v~v~f----~a~~C~~c~ 175 (358)
.+..|.........+ ...... .........+.+. ..+..++.+ ..++|++.. -.|.||..+
T Consensus 84 -~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~l~~lv--~a~~v~lFmKG~p~~P~CGFS~ 158 (227)
T KOG0911|consen 84 -DRLSGADPPFLVSKVEKLAESGSA--SLGMGLSTTIRETQTTNETDLDNRLEKLV--KAKPVMLFMKGTPEEPKCGFSR 158 (227)
T ss_pred -hhhhccCcHHHHHHHHHhhhhccc--ccCCCCCcchhcccccchhhHHHHHHHhc--ccCeEEEEecCCCCcccccccH
Confidence 566665544433332 222210 0001111112221 111233333 334444333 246677777
Q ss_pred hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC-CcccEEE-EEeCC
Q 018270 176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV-SGFPTLK-FFPKG 225 (358)
Q Consensus 176 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pti~-~~~~g 225 (358)
++...++.. ++.+...|+-.++++.+..+. +.+||+- +|-+|
T Consensus 159 ~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 159 QLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 776665543 455788888888877665442 3456654 55555
No 219
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.63 E-value=5.4e-07 Score=74.13 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------------------------cHHHH
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDLA 208 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------------~~~l~ 208 (358)
.++++++.||++||+.|....+.+.++.+.+.. .++.++.|..+. ...++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 678999999999999999999999999999963 457777776542 12567
Q ss_pred HhcCCCcccEEEEEeCCCcceeee---------cCCCCHHHHHHHHHHhcCCCCC
Q 018270 209 EKYGVSGFPTLKFFPKGNKDGEEY---------GGGRDLEDFVSFINEKCGTSRD 254 (358)
Q Consensus 209 ~~~~v~~~Pti~~~~~g~~~~~~~---------~g~~~~~~l~~~i~~~~~~~~~ 254 (358)
+.|++...|+++++.++++..... .+..+.+++.+-|+..+.....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 789999999999998666533221 1234678888888887765443
No 220
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.63 E-value=2.1e-07 Score=75.01 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~ 82 (358)
++++++|.||++||++|+...|.+.++.+++++ ..+.+..++|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEec
Confidence 468899999999999999999999999999975 3588888886
No 221
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.62 E-value=2.7e-07 Score=77.09 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=60.4
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc------------------ccHHHHHhcCCCcccEE
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------------------KYKDLAEKYGVSGFPTL 219 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~v~~~Pti 219 (358)
.+++++|.||++||++|+...|.+.++.+... .++.++..|.. ...++.+.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 67899999999999999999999999887642 34555542210 13467889999999998
Q ss_pred EEEeCCCcceeeecCC-CCHHHHHHHHHH
Q 018270 220 KFFPKGNKDGEEYGGG-RDLEDFVSFINE 247 (358)
Q Consensus 220 ~~~~~g~~~~~~~~g~-~~~~~l~~~i~~ 247 (358)
+++.++++ +.+.|. .+.+.+.+.++.
T Consensus 151 ~lID~~G~--I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGK--IRAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCe--EEEccCCCCHHHHHHHHHH
Confidence 88876554 334453 345566666543
No 222
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.7e-07 Score=76.45 Aligned_cols=116 Identities=21% Similarity=0.358 Sum_probs=90.5
Q ss_pred cCCCeEEcChhhHHHHhcC-CC--cEEEEEECC----CChhhhhhhHHHHHHHHHhhcC----C--ceEEEEEeCccchh
Q 018270 21 LADDVVVLTEDNFEKEVGQ-DR--GALVEFYAP----WCGHCKKLAPEYEKLGASFKKA----K--SVLIGKVDCDEHKS 87 (358)
Q Consensus 21 ~~~~v~~l~~~~f~~~~~~-~~--~~lv~fya~----~c~~C~~~~~~~~~~~~~~~~~----~--~v~~~~vd~~~~~~ 87 (358)
+...|+.+++++|..+++. .+ .++|.|.|. .|.-|+.+..+|..++..+... + ++.|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 3567999999999999842 22 367888874 4999999999999999887522 2 78999999999999
Q ss_pred hHhhcCccCCCeEEEccCCCCCc---ccc---cCCCCHHHHHHHHhccCCCCccc
Q 018270 88 LCSKYGVQGYPTIQWFPKGSLEP---KKY---EGPRSTEALAEYVNNEGGTNVKI 136 (358)
Q Consensus 88 l~~~~~i~~~P~l~~~~~~~~~~---~~~---~g~~~~~~i~~~i~~~~~~~~~~ 136 (358)
..+.+++++.|++++|.+....+ ..+ +-...++++.+|+.+.+.....+
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~s 172 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRS 172 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeee
Confidence 99999999999999996643221 111 11334999999999988766653
No 223
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.56 E-value=6.5e-07 Score=72.17 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~ 201 (358)
.+++++|.||++||++|+...|.+.++.+.|+. .++.++.+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEec
Confidence 578899999999999999999999999999974 3677877775
No 224
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=74.16 Aligned_cols=70 Identities=29% Similarity=0.547 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCC---CeEEEEEeCccc-----------------------HHHHHhc
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED---DVVVANLDADKY-----------------------KDLAEKY 211 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~---~v~~~~vd~~~~-----------------------~~l~~~~ 211 (358)
.++.|.+.|.|.||+||+++-|.+.++.+..+.+. .++|+.-|-+.. ++++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 57999999999999999999999998888876442 355555444422 2788999
Q ss_pred CCCcccEEEEEeCCCc
Q 018270 212 GVSGFPTLKFFPKGNK 227 (358)
Q Consensus 212 ~v~~~Pti~~~~~g~~ 227 (358)
+|.+.|++++..+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 9999999998876654
No 225
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.56 E-value=3.6e-07 Score=73.56 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.3
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~ 201 (358)
.+++++|.||++||+ |....|.+.++.+.|+. .++.++.|.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEecc
Confidence 578999999999999 99999999999999964 3577777764
No 226
>PLN02412 probable glutathione peroxidase
Probab=98.56 E-value=3.8e-07 Score=74.58 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 83 (358)
.+++++|.||++||++|+...|.+.++.+++++. .+.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEeccc
Confidence 4689999999999999999999999999999853 4888888763
No 227
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.55 E-value=2.6e-07 Score=74.38 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 83 (358)
.+++++|.||++||+ |....|.+.++.+++++ ..+.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEeccC
Confidence 478999999999999 99999999999999975 34778777653
No 228
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.55 E-value=4.1e-07 Score=69.24 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=66.2
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcC--ccCCCeEEEccCCCCCcccccC-
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYG--VQGYPTIQWFPKGSLEPKKYEG- 115 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~P~l~~~~~~~~~~~~~~g- 115 (358)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+.+...|+ +..+|++.++.++.. ...+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~ 108 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVGG 108 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhhc
Confidence 78899999999999999999999999999863 6889999997 7889999999 999999998877654 244444
Q ss_pred -CCCHHHHHH
Q 018270 116 -PRSTEALAE 124 (358)
Q Consensus 116 -~~~~~~i~~ 124 (358)
......+..
T Consensus 109 ~~~~~~~~~~ 118 (127)
T COG0526 109 KVLPKEALID 118 (127)
T ss_pred ccCCHHHHHH
Confidence 344444443
No 229
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.54 E-value=4.2e-07 Score=69.13 Aligned_cols=67 Identities=42% Similarity=0.818 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcC--CCcccEEEEEeCCCc
Q 018270 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYG--VSGFPTLKFFPKGNK 227 (358)
Q Consensus 159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~--v~~~Pti~~~~~g~~ 227 (358)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..++.. ....+...|+ +..+|++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 77899999999999999999999999999853 6888889986 7888999999 899999998887754
No 230
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.53 E-value=4.5e-07 Score=63.03 Aligned_cols=69 Identities=20% Similarity=0.419 Sum_probs=51.8
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 238 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~ 238 (358)
+..|+++||++|+...+.+.+. ++.+..+|++.++ ++.+.+++.++|++++. | . ...| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~---~~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K---IIVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E---EEee-CCH
Confidence 5689999999999998887652 4667778877554 35677999999999875 3 2 2445 577
Q ss_pred HHHHHHHH
Q 018270 239 EDFVSFIN 246 (358)
Q Consensus 239 ~~l~~~i~ 246 (358)
+.+.+|++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888864
No 231
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.52 E-value=7e-07 Score=73.43 Aligned_cols=92 Identities=14% Similarity=0.262 Sum_probs=68.8
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-----------------------------chhhH
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------------HKSLC 89 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------------~~~l~ 89 (358)
++++++|+||++||+.|....+.+.++.+++.+ .++.++.|..+. +..++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 678999999999999999999999999999864 357777777643 12356
Q ss_pred hhcCccCCCeEEEccCCCCCcccc---------cCCCCHHHHHHHHhccCC
Q 018270 90 SKYGVQGYPTIQWFPKGSLEPKKY---------EGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 90 ~~~~i~~~P~l~~~~~~~~~~~~~---------~g~~~~~~i~~~i~~~~~ 131 (358)
+.|++...|+++++++++...... .+..+.+++.+.|.....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 788999999999998877542221 122356777777776543
No 232
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.46 E-value=2.7e-07 Score=72.32 Aligned_cols=71 Identities=25% Similarity=0.455 Sum_probs=56.3
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC---CceEEEEEeCccc-----------------------hhhHhhc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA---KSVLIGKVDCDEH-----------------------KSLCSKY 92 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~-----------------------~~l~~~~ 92 (358)
+++.+.++|-|.||++|+.|.|.+.++.+.+... -.|.|+.-|-+.. .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5699999999999999999999999999888754 2455554444321 2578899
Q ss_pred CccCCCeEEEccCCCCC
Q 018270 93 GVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 93 ~i~~~P~l~~~~~~~~~ 109 (358)
+|.+.|++++..+.+..
T Consensus 112 ~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTV 128 (157)
T ss_pred ccCcCceeEEecCCCCE
Confidence 99999999999887744
No 233
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.43 E-value=1.1e-06 Score=74.65 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=66.9
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------cchhhHhhcCccCCCeEEEccCCCCC
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------EHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
.++.-|++||.+.|++|+.+.|.+..+++.+. -.|..+.+|.. .+..+++++||..+|++++..+++..
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 36778999999999999999999999999985 23444445432 45788999999999999999887633
Q ss_pred cc-cccCCCCHHHHHHH
Q 018270 110 PK-KYEGPRSTEALAEY 125 (358)
Q Consensus 110 ~~-~~~g~~~~~~i~~~ 125 (358)
.. .-.|..+.++|.+-
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 22 33589998888764
No 234
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.41 E-value=1.5e-06 Score=60.29 Aligned_cols=69 Identities=22% Similarity=0.437 Sum_probs=52.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~ 119 (358)
+..|+++||++|+...+.+.+ ..+.+..+|.++++. +++.+++.++|++++. | . ...| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~--------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~--~--~~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS--------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H--K--IIVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH--------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C--E--EEee-CCH
Confidence 467999999999999888764 236777888876644 5677999999999985 2 1 2555 577
Q ss_pred HHHHHHHh
Q 018270 120 EALAEYVN 127 (358)
Q Consensus 120 ~~i~~~i~ 127 (358)
+.|.++++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888764
No 235
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.40 E-value=1e-06 Score=59.03 Aligned_cols=60 Identities=47% Similarity=0.842 Sum_probs=51.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHh---hcCccCCCeEEEccCC
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS---KYGVQGYPTIQWFPKG 106 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~~ 106 (358)
++.||++||++|+.+.+.+.++ .... ..+.+..++++...+... .+++.++|+++++.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN--KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC--CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 3333 679999999998877665 8899999999999876
No 236
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.39 E-value=2.4e-06 Score=70.94 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=34.8
Q ss_pred CCCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270 158 KSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201 (358)
Q Consensus 158 ~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~ 201 (358)
.++++ ++.+||+||++|+...|.+.++.+.|+. .++.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEec
Confidence 46654 5667999999999999999999999964 3577777765
No 237
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.36 E-value=5.3e-06 Score=68.95 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=88.8
Q ss_pred hccCCCeEEcChhhHHHHhcCCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--
Q 018270 19 SALADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ-- 95 (358)
Q Consensus 19 ~~~~~~v~~l~~~~f~~~~~~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-- 95 (358)
....+.+..+|.+++..+...+.+ +++.|+.........+...+..++..++ +.+.|+.+|++..+.+++.+|++
T Consensus 73 ~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~~~ 150 (184)
T PF13848_consen 73 KNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGIDED 150 (184)
T ss_dssp HHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTTTS
T ss_pred HhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCCCc
Confidence 344567999999999999988876 7777877777888999999999999987 67999999999889999999998
Q ss_pred CCCeEEEccCCCCC-cccccCCCCHHHHHHHHh
Q 018270 96 GYPTIQWFPKGSLE-PKKYEGPRSTEALAEYVN 127 (358)
Q Consensus 96 ~~P~l~~~~~~~~~-~~~~~g~~~~~~i~~~i~ 127 (358)
.+|+++++...... ...+.|..+.++|.+|++
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 99999999854432 122378999999999986
No 238
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.35 E-value=1.8e-06 Score=68.39 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCccC
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQG 96 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~ 96 (358)
.+++++|.|| +.||+.|....+.+.++.+.+.+ ..+.++.|..+. +..+++.||+..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 3789999999 58999999999999999998864 346666665432 234566677776
Q ss_pred C---------CeEEEccCCCCCcccccCCCCHHHHHH
Q 018270 97 Y---------PTIQWFPKGSLEPKKYEGPRSTEALAE 124 (358)
Q Consensus 97 ~---------P~l~~~~~~~~~~~~~~g~~~~~~i~~ 124 (358)
. |+.+++++++.....+.|.....++.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 6 777777766655566666655544444
No 239
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.34 E-value=2.6e-06 Score=74.25 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=75.8
Q ss_pred CCeEEcC-hhhHHHHhcC---CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270 23 DDVVVLT-EDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98 (358)
Q Consensus 23 ~~v~~l~-~~~f~~~~~~---~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (358)
..+.+++ .+.|.+.+.. +..|+|+||-+.++.|..+...|..+|.+| +.+.|++|.....+ +...|.+..+|
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky---p~vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY---PEVKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH----TTSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEEehhccC-cccCCcccCCC
Confidence 4678885 5789888833 446899999999999999999999999999 67999999987765 77899999999
Q ss_pred eEEEccCCCCCcccc-------cCCCCHHHHHHHHhccCC
Q 018270 99 TIQWFPKGSLEPKKY-------EGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 99 ~l~~~~~~~~~~~~~-------~g~~~~~~i~~~i~~~~~ 131 (358)
++++|++|... ..+ ....+..++..|+.++.-
T Consensus 201 tllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 201 TLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp EEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred EEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999987532 222 225678889899887643
No 240
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.32 E-value=2.3e-06 Score=68.18 Aligned_cols=86 Identities=16% Similarity=0.376 Sum_probs=61.5
Q ss_pred CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhH-HH--HHHHHHhhcCCceEEEEEeCccchhhHhhc------
Q 018270 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAP-EY--EKLGASFKKAKSVLIGKVDCDEHKSLCSKY------ 92 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~-~~--~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~------ 92 (358)
.-.+...+++.|..+-+++|+++|.++++||..|..+.. .| .++++.++ ..+.-++||.++.+++...|
T Consensus 19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN--~~FI~VkvDree~Pdid~~y~~~~~~ 96 (163)
T PF03190_consen 19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN--RNFIPVKVDREERPDIDKIYMNAVQA 96 (163)
T ss_dssp SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH--HH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh--CCEEEEEeccccCccHHHHHHHHHHH
Confidence 345677788889999999999999999999999999986 44 57788887 56888899999999998888
Q ss_pred --CccCCCeEEEccCCCCC
Q 018270 93 --GVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 93 --~i~~~P~l~~~~~~~~~ 109 (358)
|..++|+.+++.+.+..
T Consensus 97 ~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 97 MSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp HHS---SSEEEEE-TTS-E
T ss_pred hcCCCCCCceEEECCCCCe
Confidence 78899999999987743
No 241
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.31 E-value=6.1e-06 Score=65.81 Aligned_cols=95 Identities=17% Similarity=0.447 Sum_probs=60.3
Q ss_pred HHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEE
Q 018270 123 AEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANL 199 (358)
Q Consensus 123 ~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~v 199 (358)
.-++.++....+. ....+.+.|+..- ..+++++|.++++||..|..|.. .|. ++|+.+ +.+++-++|
T Consensus 9 Spyl~~ha~~~V~-------W~~w~~ea~~~Ak-~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~l--N~~FI~Vkv 78 (163)
T PF03190_consen 9 SPYLRQHAHNPVN-------WQPWGEEALEKAK-KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYL--NRNFIPVKV 78 (163)
T ss_dssp -HHHHTTTTSSS---------B-SSHHHHHHHH-HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHH--HHH-EEEEE
T ss_pred CHHHHHhccCCCC-------cccCCHHHHHHHH-hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHH--hCCEEEEEe
Confidence 3466666554433 3344556666654 78899999999999999999864 343 456655 357999999
Q ss_pred eCcccHHHHHhc--------CCCcccEEEEEeCCCc
Q 018270 200 DADKYKDLAEKY--------GVSGFPTLKFFPKGNK 227 (358)
Q Consensus 200 d~~~~~~l~~~~--------~v~~~Pti~~~~~g~~ 227 (358)
|.++.+++...| |..|+|+.+|..+.++
T Consensus 79 Dree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 79 DREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp ETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred ccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence 999999998888 7889999999987654
No 242
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.31 E-value=4.3e-06 Score=66.18 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCCc
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVSG 215 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~~ 215 (358)
.+++++|.|| +.||+.|....+.+.++...+.. .++.++.|..+.. ..+++.||+..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 4788999999 58999999999999999998863 3566666654422 26777888877
Q ss_pred c---------cEEEEEeCCCcceeeecCCCCHHHHHH
Q 018270 216 F---------PTLKFFPKGNKDGEEYGGGRDLEDFVS 243 (358)
Q Consensus 216 ~---------Pti~~~~~g~~~~~~~~g~~~~~~l~~ 243 (358)
. |+.+++.++++....+.|....+++.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 7 888888766666667777665555443
No 243
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.30 E-value=4.7e-06 Score=70.70 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=65.6
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------ccHHHHHhcCCCcccEEEEEeCCCc-
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------KYKDLAEKYGVSGFPTLKFFPKGNK- 227 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~Pti~~~~~g~~- 227 (358)
.++.-++.||.+.|+.|..+.|++..+++.+. -.+..+.+|.. .+.++++++||..+|++++...++.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 46778999999999999999999999999984 23444444421 3578999999999999999987764
Q ss_pred ceeeecCCCCHHHHHH
Q 018270 228 DGEEYGGGRDLEDFVS 243 (358)
Q Consensus 228 ~~~~~~g~~~~~~l~~ 243 (358)
....-.|..+.++|.+
T Consensus 197 ~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 197 WYPVSQGFMSLDELED 212 (215)
T ss_pred EEEEeeecCCHHHHHH
Confidence 3334467888888865
No 244
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.29 E-value=3.6e-06 Score=64.01 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=66.9
Q ss_pred cCCCcEEEEEECC----CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccCCC---C
Q 018270 38 GQDRGALVEFYAP----WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGS---L 108 (358)
Q Consensus 38 ~~~~~~lv~fya~----~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~~~---~ 108 (358)
++.|+++|++|++ ||..|+..... .++.+.++ .++.+...|++ +...++..+++.++|++.++.... .
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 7889999999999 88888655311 34445554 45777778876 446799999999999999994322 2
Q ss_pred CcccccCCCCHHHHHHHHhcc
Q 018270 109 EPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 109 ~~~~~~g~~~~~~i~~~i~~~ 129 (358)
...+..|..+++++...++..
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 245789999999999988764
No 245
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.29 E-value=4.7e-06 Score=58.42 Aligned_cols=73 Identities=22% Similarity=0.498 Sum_probs=55.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccC-CCCHHHHH
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG-PRSTEALA 123 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g-~~~~~~i~ 123 (358)
|.+++++|++|..+...+.+++..++ +.+-.+|....+++ .+|||.++|++++ +|. ..+.| ..+.+++.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK---VVFVGRVPSKEELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE---EEEESS--HHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHHH
Confidence 44578899999999999999998873 55666677666666 9999999999965 442 67888 77888888
Q ss_pred HHHh
Q 018270 124 EYVN 127 (358)
Q Consensus 124 ~~i~ 127 (358)
+||+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 246
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.28 E-value=3.5e-06 Score=59.13 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=46.6
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHh-----cCCCcccEEEEEeCCCcceeeecCCCC
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK-----YGVSGFPTLKFFPKGNKDGEEYGGGRD 237 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~-----~~v~~~Pti~~~~~g~~~~~~~~g~~~ 237 (358)
++.|+++||++|+.+.+.+.+++.. +-.+|++++...... +++.++|++ ++.+|. . -...+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~--------~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~---l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA--------YEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--F---LTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc--------eEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--E---ecCCC
Confidence 5789999999999999988766433 335677666555554 388899997 465552 1 22445
Q ss_pred HHHHHHHH
Q 018270 238 LEDFVSFI 245 (358)
Q Consensus 238 ~~~l~~~i 245 (358)
..++.+.+
T Consensus 68 ~~~~~~~l 75 (77)
T TIGR02200 68 AAQVKAKL 75 (77)
T ss_pred HHHHHHHh
Confidence 55665554
No 247
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=8.8e-06 Score=63.02 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=68.8
Q ss_pred hcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc----------------cHHHHHhcCCCcc
Q 018270 156 LDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----------------YKDLAEKYGVSGF 216 (358)
Q Consensus 156 ~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~v~~~ 216 (358)
...++..+++|..+.|+.|.++.... .++.+.+. +.+.++.++++. ..+|+..|+|+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 35678999999999999999986533 34444443 456677666652 3489999999999
Q ss_pred cEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270 217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
||+++|+..|+......|...++++..-++
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999887777777889999988876654
No 248
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.26 E-value=5e-06 Score=64.25 Aligned_cols=69 Identities=23% Similarity=0.546 Sum_probs=56.6
Q ss_pred CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCC-
Q 018270 158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVS- 214 (358)
Q Consensus 158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~- 214 (358)
.+++++|.||+. ||++|+...+.+.++...++. .++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 568999999999 999999999999999999973 4677777776532 2678888888
Q ss_pred -----cccEEEEEeCCCc
Q 018270 215 -----GFPTLKFFPKGNK 227 (358)
Q Consensus 215 -----~~Pti~~~~~g~~ 227 (358)
.+|+++++.+++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8898888887764
No 249
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.26 E-value=8.9e-06 Score=66.99 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 208 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 208 (358)
.++.++|.|| +.||++|....+.+.++++.|.. .++.++.|..+. ...++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 4688999999 89999999999999999999964 345555554432 12466
Q ss_pred HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHh
Q 018270 209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 248 (358)
Q Consensus 209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~ 248 (358)
+.||+. ..|+.+++.+.+.....+.+ .++.+++...|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677775 46788888766665555532 34667777777543
No 250
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.26 E-value=2.8e-06 Score=56.82 Aligned_cols=60 Identities=42% Similarity=0.843 Sum_probs=50.0
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHH---hcCCCcccEEEEEeCC
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKG 225 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~---~~~v~~~Pti~~~~~g 225 (358)
++.|+++||++|..+.+.+.++ +.. ..++.+..++++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 222 3578999999987766554 7899999999999876
No 251
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.26 E-value=3.4e-06 Score=65.19 Aligned_cols=69 Identities=20% Similarity=0.518 Sum_probs=54.7
Q ss_pred CCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---------------------hhhHhhcCcc-
Q 018270 39 QDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---------------------KSLCSKYGVQ- 95 (358)
Q Consensus 39 ~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~- 95 (358)
.+++++|.||+. ||++|+...+.+.++..+++. ..+.++.|..+.. .++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 569999999999 999999999999999999874 3577777766533 3456677777
Q ss_pred -----CCCeEEEccCCCC
Q 018270 96 -----GYPTIQWFPKGSL 108 (358)
Q Consensus 96 -----~~P~l~~~~~~~~ 108 (358)
.+|+++++++++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 7788888777654
No 252
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.22 E-value=5.4e-06 Score=68.85 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=35.6
Q ss_pred CCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270 39 QDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83 (358)
Q Consensus 39 ~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 83 (358)
.++++ ++.+||+||++|+...|.+.++.+++++ ..+.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEecc
Confidence 45654 4566999999999999999999999975 35888888763
No 253
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.22 E-value=7.1e-06 Score=70.85 Aligned_cols=88 Identities=22% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------chhhHhhcCccCCCeEEEccCCCCCc
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPKGSLEP 110 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~~~~~~ 110 (358)
.+.-|++||.+.|++|+++.|.+..+++.+. -.|..+.+|..- +..+++++||..+|++++..+++...
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4578999999999999999999999999985 234444444432 24588999999999999998875442
Q ss_pred cc-ccCCCCHHHHHHHHhcc
Q 018270 111 KK-YEGPRSTEALAEYVNNE 129 (358)
Q Consensus 111 ~~-~~g~~~~~~i~~~i~~~ 129 (358)
.. -.|..+.++|.+-+...
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNV 247 (256)
T ss_pred EEEeeccCCHHHHHHHHHHH
Confidence 22 35899999998766543
No 254
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.20 E-value=9.2e-06 Score=56.91 Aligned_cols=71 Identities=24% Similarity=0.536 Sum_probs=53.6
Q ss_pred EcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC-CCCHHHHHHH
Q 018270 166 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSF 244 (358)
Q Consensus 166 f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~ 244 (358)
+++++|+.|..+...+++++..+. +.+-.+|..+.+++ .+|||.++|++++ +| ...|.| ..+.++|.+|
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng---~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NG---KVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TT---EEEEESS--HHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CC---EEEEEecCCCHHHHHHH
Confidence 367889999999999999998872 55555666667777 9999999999854 34 267888 7889999988
Q ss_pred HH
Q 018270 245 IN 246 (358)
Q Consensus 245 i~ 246 (358)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 255
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.20 E-value=2e-05 Score=59.52 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=79.7
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHH---hcCCCCeEEEEEeCcccHHHHHhcCCCc--cc
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA---FTLEDDVVVANLDADKYKDLAEKYGVSG--FP 217 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~---~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P 217 (358)
|.+++.+++..+. +.+.+..++|+.+- .-....+.+.++|+. ++ +++.|+.+|.+......+.||++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDKD--DLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 4568889998777 66666666666331 345678899999999 86 569999999998888999999997 99
Q ss_pred EEEEEeCCCcceee-ecCCCCHHHHHHHHHHhcC
Q 018270 218 TLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 218 ti~~~~~g~~~~~~-~~g~~~~~~l~~~i~~~~~ 250 (358)
.+.+....+...+. +.+..+.++|.+|+++...
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99998765322343 5688999999999988653
No 256
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.20 E-value=1.8e-05 Score=59.74 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=83.1
Q ss_pred eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHH---hhcCCceEEEEEeCccchhhHhhcCccC--CCe
Q 018270 25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGAS---FKKAKSVLIGKVDCDEHKSLCSKYGVQG--YPT 99 (358)
Q Consensus 25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~---~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~ 99 (358)
|.++|.+++......+.+..+.|+.+ ..-..+.+.+.++|+. ++ +.+.|+.+|.++.....+.||+.. +|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 46789999998888888887777733 3457889999999999 87 669999999998877889999997 999
Q ss_pred EEEccCCCCCccc-ccCCCCHHHHHHHHhccC
Q 018270 100 IQWFPKGSLEPKK-YEGPRSTEALAEYVNNEG 130 (358)
Q Consensus 100 l~~~~~~~~~~~~-~~g~~~~~~i~~~i~~~~ 130 (358)
+.+...++...+. +.+..+.++|.+|+++..
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 9998765433344 568889999999998764
No 257
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.20 E-value=2.2e-05 Score=57.83 Aligned_cols=90 Identities=22% Similarity=0.383 Sum_probs=71.9
Q ss_pred hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270 30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE 109 (358)
Q Consensus 30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~ 109 (358)
.+.++.++..+.+++|-|+.++|. .....|.++|..++ +.+.|+.+. +.++++++++.. |++++|++....
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r--~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~ 77 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLR--DDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEE 77 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcc--cCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccC
Confidence 344666778889999999999876 57788999999886 468888777 467778787754 899999876545
Q ss_pred cccccCCCCHHHHHHHHhc
Q 018270 110 PKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 110 ~~~~~g~~~~~~i~~~i~~ 128 (358)
+..|.|..+.++|.+||..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 5789999999999999964
No 258
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.20 E-value=1.5e-05 Score=65.22 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCC-CcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270 158 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202 (358)
Q Consensus 158 ~~~~v~v~f~a~~-C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~ 202 (358)
.+++++|.||++| |++|....|.+.++++.+. ++.++.|..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 5779999999999 9999999999999999883 4666666555
No 259
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.18 E-value=8.5e-06 Score=67.10 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=64.6
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC 89 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (358)
.+++++|.|| +.||++|....+.+.++++++.+ ..+.+..|.++. ...++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 4689999999 89999999999999999999975 345555555432 22355
Q ss_pred hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270 90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE 129 (358)
Q Consensus 90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~ 129 (358)
+.|++. ..|+.+++++++.....+ ...++.+++.+.|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 667775 467888888777654444 2235677788888654
No 260
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.16 E-value=9.1e-06 Score=70.93 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=74.4
Q ss_pred CCCceEcC-cccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270 140 PSNVVVLT-ADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 216 (358)
Q Consensus 140 ~~~v~~l~-~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~ 216 (358)
-..+.+++ ++.|-+.+... +..|+|.||.+.++.|..+...+..||..| +.+.|++|..+..+ +...|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky---p~vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY---PEVKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH----TTSEEEEEEECGCC-TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEEehhccC-cccCCcccCC
Confidence 45678885 47888877333 346899999999999999999999999998 57999999987665 6789999999
Q ss_pred cEEEEEeCCCcceeeec-------CCCCHHHHHHHHHHh
Q 018270 217 PTLKFFPKGNKDGEEYG-------GGRDLEDFVSFINEK 248 (358)
Q Consensus 217 Pti~~~~~g~~~~~~~~-------g~~~~~~l~~~i~~~ 248 (358)
||+++|.+|.. ...+. ...+..+|-.||.++
T Consensus 200 PtllvYk~G~l-~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDL-IGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEE-EEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEE-EEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999998743 22221 247788899898754
No 261
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.16 E-value=2.9e-05 Score=57.18 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=68.9
Q ss_pred ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcc
Q 018270 149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD 228 (358)
Q Consensus 149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~ 228 (358)
+.++.++ .....++|.|+.++|+ .....|.++|..++ +++.|+.+. +.++++++++. -|++++|++....
T Consensus 8 ~~l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r--~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~ 77 (97)
T cd02981 8 EELEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLR--DDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEE 77 (97)
T ss_pred HHHHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhcc--cCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccC
Confidence 3345555 6788889999998776 56779999999885 357777654 56788888876 5899999876556
Q ss_pred eeeecCCCCHHHHHHHHHH
Q 018270 229 GEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 229 ~~~~~g~~~~~~l~~~i~~ 247 (358)
+..|.|..+.++|.+||..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 7789999999999999964
No 262
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.15 E-value=1e-05 Score=56.77 Aligned_cols=70 Identities=26% Similarity=0.486 Sum_probs=46.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhh-----cCccCCCeEEEccCCCCCcccccCCCC
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK-----YGVQGYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
++.|+++||++|+.+.+.+.+.. +.+-.+|.+++...... +++.++|+++ +.+|. . -...+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g~-~----l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK-FADGS-F----LTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCCe-E----ecCCC
Confidence 67899999999999999887553 33446777777665555 3899999974 55542 2 11334
Q ss_pred HHHHHHHHh
Q 018270 119 TEALAEYVN 127 (358)
Q Consensus 119 ~~~i~~~i~ 127 (358)
..++.+.++
T Consensus 68 ~~~~~~~l~ 76 (77)
T TIGR02200 68 AAQVKAKLQ 76 (77)
T ss_pred HHHHHHHhh
Confidence 445555443
No 263
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.15 E-value=4.5e-05 Score=59.35 Aligned_cols=107 Identities=18% Similarity=0.313 Sum_probs=77.5
Q ss_pred CceEcCcccH-HHHHhcCCCcEEEEEcCCC---Ccc-c-chhhhhHHHHHHHhcCCCC-eEEEEEeCcccHHHHHhcCCC
Q 018270 142 NVVVLTADNF-DEIVLDKSKDVLVEFYAPW---CGH-C-KNLAPTYEKVAAAFTLEDD-VVVANLDADKYKDLAEKYGVS 214 (358)
Q Consensus 142 ~v~~l~~~~f-~~~~~~~~~~v~v~f~a~~---C~~-c-~~~~~~~~~la~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~ 214 (358)
.+++|+..++ ++.. ..++..+|.|. |. |.+ + ......+.++|+.|+ ++ +.|+.+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C-~~~~~C~i~~l-~~~~d~~~e~~~~~~~~l~~vAk~~k--gk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 3 EIIELTSEDVFEETC-EEKQLCIIAFL-PHILDCQASCRNKYLEILKSVAEKFK--KKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred ceEEecCHHHHHhhc-cCCCeEEEEEc-CccccCCHHHHHHHHHHHHHHHHHhc--CCcEEEEEEeCcccHHHHHHcCCC
Confidence 5677876554 5566 33444445553 32 222 2 346789999999997 45 999999999998899999995
Q ss_pred --cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270 215 --GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252 (358)
Q Consensus 215 --~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 252 (358)
++|+++++...+.....+.|..+.+++.+|+++.+...
T Consensus 79 ~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 79 GFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 49999999876432222779999999999999987543
No 264
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.14 E-value=1.2e-05 Score=64.25 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=36.2
Q ss_pred CCcEEEE-EECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh
Q 018270 40 DRGALVE-FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87 (358)
Q Consensus 40 ~~~~lv~-fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~ 87 (358)
+++++|. |++.||++|+...|.+.++.+++.. ..+.++.|+.+....
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~~ 70 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPEK 70 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHHH
Confidence 3455555 5699999999999999999999864 458888888765543
No 265
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.14 E-value=3.8e-06 Score=67.50 Aligned_cols=82 Identities=23% Similarity=0.370 Sum_probs=73.3
Q ss_pred CeEEc-ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 24 DVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 24 ~v~~l-~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
...++ ++.+|-+..+.+.-++++||-+.-..|+-+..+++.+|..+ -...|++||++..|-++.+++|...|++.+
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h---~eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH---VETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhc---ccceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 34444 47888888888888999999999999999999999999987 568999999999999999999999999999
Q ss_pred ccCCCC
Q 018270 103 FPKGSL 108 (358)
Q Consensus 103 ~~~~~~ 108 (358)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 998863
No 266
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.13 E-value=2.8e-05 Score=59.09 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=67.5
Q ss_pred hcCCCcEEEEEcCC----CCcccchh--hhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEEEEe---C
Q 018270 156 LDKSKDVLVEFYAP----WCGHCKNL--APTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFFP---K 224 (358)
Q Consensus 156 ~~~~~~v~v~f~a~----~C~~c~~~--~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~~~~---~ 224 (358)
....|.++|.++++ ||..|+.. .|.+.+.-+ .++++...|++. ...++..+++.++|++.++. +
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-----~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-----TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-----cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 35779999999999 89999876 333333322 468888888874 45799999999999999984 2
Q ss_pred CCcceeeecCCCCHHHHHHHHHHhc
Q 018270 225 GNKDGEEYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 225 g~~~~~~~~g~~~~~~l~~~i~~~~ 249 (358)
......+..|..++++|...++...
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 2224567899999999999987653
No 267
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.13 E-value=1.3e-05 Score=66.91 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=63.0
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhc
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKY 92 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~ 92 (358)
.+++++|.|| +.||++|....+.|.++.+.+.+. .+.++.|.++. +.++++.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 4688999999 999999999999999999988643 34455454432 33567788
Q ss_pred Ccc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270 93 GVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 128 (358)
Q Consensus 93 ~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~ 128 (358)
|+. ..|+.+++++++.....+ ...+..+++.+.|+.
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 875 358888887766543332 123577888777754
No 268
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.12 E-value=2.5e-05 Score=65.13 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY 211 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~ 211 (358)
.+++++|.|| +.||++|....|.+.++.+.|... ++.++.|..+. ...+++.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 5678999999 999999999999999999998633 34444443331 23678888
Q ss_pred CCC------cccEEEEEeCCCcceeeec----CCCCHHHHHHHHHH
Q 018270 212 GVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE 247 (358)
Q Consensus 212 ~v~------~~Pti~~~~~g~~~~~~~~----g~~~~~~l~~~i~~ 247 (358)
|+. ..|+.+++...+.....+. ..++.+++.+.|..
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 986 3588888876655444332 13578888887743
No 269
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.11 E-value=1.9e-05 Score=63.12 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=35.6
Q ss_pred CCCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH
Q 018270 158 KSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205 (358)
Q Consensus 158 ~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~ 205 (358)
.++++ ++.|++.||++|+...|.+.++.+.+.. .++.++.|..+...
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~ 69 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE 69 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence 33444 5555699999999999999999999963 45777777776443
No 270
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.7e-05 Score=67.47 Aligned_cols=115 Identities=17% Similarity=0.366 Sum_probs=90.1
Q ss_pred CCCCceEcCcccHHHHHhcCCC--cEEEEEcCC----CCcccchhhhhHHHHHHHhcCC------CCeEEEEEeCcccHH
Q 018270 139 VPSNVVVLTADNFDEIVLDKSK--DVLVEFYAP----WCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKYKD 206 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~~~~~--~v~v~f~a~----~C~~c~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~ 206 (358)
.++.|..+++++|.+++....+ .++|+|.|. .|.-|++...+|.-+|..+..+ .++-|+.||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 3566899999999999964433 468888875 4999999999999999987533 268999999999999
Q ss_pred HHHhcCCCcccEEEEEeCCCc---ceeeec---CCCCHHHHHHHHHHhcCCCC
Q 018270 207 LAEKYGVSGFPTLKFFPKGNK---DGEEYG---GGRDLEDFVSFINEKCGTSR 253 (358)
Q Consensus 207 l~~~~~v~~~Pti~~~~~g~~---~~~~~~---g~~~~~~l~~~i~~~~~~~~ 253 (358)
+.+++++++.|++++|++... ....+. -+..+|.+.+|+.+.+....
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999999999999999954322 222222 23569999999999876554
No 271
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.10 E-value=1.9e-05 Score=64.50 Aligned_cols=43 Identities=9% Similarity=0.305 Sum_probs=35.8
Q ss_pred CCCcEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270 39 QDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84 (358)
Q Consensus 39 ~~~~~lv~fya~~-c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 84 (358)
.+++++|.||+.| |++|....|.|.++++++. .+.++.|.++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 4689999999999 9999999999999998873 46666666653
No 272
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.09 E-value=8.6e-06 Score=63.17 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=52.8
Q ss_pred cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc---CCCcccEEEEE
Q 018270 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFF 222 (358)
Q Consensus 146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~---~v~~~Pti~~~ 222 (358)
++.+....+........++.|..+|||.|....|.+.++++.. +++.+-.+..+++.++.++| |..++|+++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~---p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN---PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH----TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEE
Confidence 3444444443334556788899999999999999999999975 46777777777788877776 56679999999
Q ss_pred eCCCcceeeec
Q 018270 223 PKGNKDGEEYG 233 (358)
Q Consensus 223 ~~g~~~~~~~~ 233 (358)
..++....++.
T Consensus 105 d~~~~~lg~wg 115 (129)
T PF14595_consen 105 DKDGKELGRWG 115 (129)
T ss_dssp -TT--EEEEEE
T ss_pred cCCCCEeEEEc
Confidence 77655444443
No 273
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.09 E-value=1.9e-05 Score=67.84 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=67.5
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------chhhHhhcCccCCCeEEEccCCCCCc
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPKGSLEP 110 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~~~~~~ 110 (358)
++.-|++||.+.|++|+++.|.+..+++.+. -.|.-+.+|..- +...++++||..+|++++.++++...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4578999999999999999999999999985 345555565532 23467899999999999998876442
Q ss_pred c-cccCCCCHHHHHHHHhc
Q 018270 111 K-KYEGPRSTEALAEYVNN 128 (358)
Q Consensus 111 ~-~~~g~~~~~~i~~~i~~ 128 (358)
. .-.|..+.++|.+-+..
T Consensus 221 ~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred EEEeeccCCHHHHHHHHHH
Confidence 2 23589999999876654
No 274
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.05 E-value=3.5e-05 Score=62.09 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc
Q 018270 158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203 (358)
Q Consensus 158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 203 (358)
.+++++|.||+. ||+.|....+.+.++.+.+.. .++.++.|..+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 568899999976 688899999999999998863 357677776653
No 275
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.05 E-value=1.3e-05 Score=63.54 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.3
Q ss_pred CCCcEEEEEECCCChh-hhhhhHHHHHHHHHhhcCC--ceEEEEEeCc
Q 018270 39 QDRGALVEFYAPWCGH-CKKLAPEYEKLGASFKKAK--SVLIGKVDCD 83 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~-C~~~~~~~~~~~~~~~~~~--~v~~~~vd~~ 83 (358)
.+++++|.||++||++ |....+.+.++.+.++..+ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999999997542 5777777664
No 276
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.04 E-value=9e-06 Score=58.12 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=41.8
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-----HHHHhcCCCcccEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLK 220 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~Pti~ 220 (358)
++.|+++||++|+...+.+.++. . .+.+.+..++.+.+. .+.+.+|+.++|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i--~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--V--KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--C--CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 47899999999999999999886 2 234677788776433 367778999999973
No 277
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.03 E-value=4.1e-05 Score=58.00 Aligned_cols=74 Identities=23% Similarity=0.442 Sum_probs=49.8
Q ss_pred hhHHHHh----cCCCcEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-------hhHh--
Q 018270 31 DNFEKEV----GQDRGALVEFYA-------PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-------SLCS-- 90 (358)
Q Consensus 31 ~~f~~~~----~~~~~~lv~fya-------~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~-- 90 (358)
++|.+.+ .++++++|.|++ +|||.|+...|.+.++-.... .+..++.|.+...+ .+-+
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 4555555 456889999996 599999999999998887754 45777777664222 2333
Q ss_pred hcCccCCCeEEEccCC
Q 018270 91 KYGVQGYPTIQWFPKG 106 (358)
Q Consensus 91 ~~~i~~~P~l~~~~~~ 106 (358)
.+++.++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5899999999999765
No 278
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.02 E-value=3e-05 Score=62.48 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270 39 QDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84 (358)
Q Consensus 39 ~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 84 (358)
.+++++|.||+. ||+.|....+.+.++.+.+++ ..+.++.|..+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 468899999975 688899999999999998875 347777776643
No 279
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=3.4e-05 Score=57.01 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=56.0
Q ss_pred hhHHHHh---cCCCcEEEEEEC--------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------hhhHhhc
Q 018270 31 DNFEKEV---GQDRGALVEFYA--------PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------KSLCSKY 92 (358)
Q Consensus 31 ~~f~~~~---~~~~~~lv~fya--------~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~l~~~~ 92 (358)
++|++.+ .+++-++|+|++ +|||.|.+..|.+.+.-+... .++.|+.|++.+- ..+.+..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCC
Confidence 5566665 345559999997 799999999999998888554 6789999988643 3455566
Q ss_pred Cc-cCCCeEEEccC
Q 018270 93 GV-QGYPTIQWFPK 105 (358)
Q Consensus 93 ~i-~~~P~l~~~~~ 105 (358)
++ .++||++=+..
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999998864
No 280
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.99 E-value=1.4e-05 Score=57.17 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=41.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----hhHhhcCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----SLCSKYGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~P~l~~ 102 (358)
++.|+++|||+|+.+.+.+.++. .+ +.+.+..+|.+.+. .+.+.+++.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999999876 22 33667777765443 2667789999999853
No 281
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.97 E-value=7.3e-05 Score=63.06 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=65.0
Q ss_pred CCCcEE-EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------------------------ccHHHHH
Q 018270 158 KSKDVL-VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAE 209 (358)
Q Consensus 158 ~~~~v~-v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 209 (358)
.++.++ +.|++.||+.|....+.+.++..+|+.. ++.++.|.++ .+..+++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 355554 4689999999999999999999988633 3444444333 1237888
Q ss_pred hcCCC------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHhc
Q 018270 210 KYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC 249 (358)
Q Consensus 210 ~~~v~------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~~ 249 (358)
.||+. .+|+.+++.++++..... .++++.+++...|+...
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 88984 489999998776633322 45689999999987654
No 282
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.96 E-value=5.1e-05 Score=62.62 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 83 (358)
.+++++|.|||+||++|.+ .|.+.++.+++++ ..+.+..+.|.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeecc
Confidence 4689999999999999975 8899999999975 35888888884
No 283
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.96 E-value=7.6e-05 Score=64.55 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------ccHHHHHhcCCCcccEEEEEeCCCcc
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------KYKDLAEKYGVSGFPTLKFFPKGNKD 228 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~Pti~~~~~g~~~ 228 (358)
.++.-++.||.+-|+.|.++.|++..+++.++ -.+..+.+|.. .+..+++++||..+|++++...+...
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 45578999999999999999999999999994 23444444433 12568999999999999999877553
Q ss_pred ee-eecCCCCHHHHHHHHHHhc
Q 018270 229 GE-EYGGGRDLEDFVSFINEKC 249 (358)
Q Consensus 229 ~~-~~~g~~~~~~l~~~i~~~~ 249 (358)
.. .-.|..+.++|.+=|-...
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 33 3467889999877665543
No 284
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.96 E-value=4.6e-05 Score=60.94 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=36.0
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 84 (358)
+.++++|.|| ++||+.|....|.+.++.+++.+ ..+.++.|..+.
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~ 72 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVDS 72 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCCC
Confidence 3378888887 89999999999999999999874 357777776643
No 285
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.95 E-value=2.9e-05 Score=61.59 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcCCC--CeEEEEEeCc
Q 018270 158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLED--DVVVANLDAD 202 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~~~--~v~~~~vd~~ 202 (358)
.+++++|.||++||++ |....+.+.++.+.+..++ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999999997542 5777766654
No 286
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.92 E-value=7.1e-05 Score=62.12 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=65.4
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------------------------cchhhHhhc
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------------------------EHKSLCSKY 92 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~ 92 (358)
.++++++.|| +.||+.|....+.|.+..+++... .+.+..|..+ .+.++++.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 4578999999 999999999999999999998643 3444444433 244678888
Q ss_pred Cc----cCC--CeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270 93 GV----QGY--PTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE 129 (358)
Q Consensus 93 ~i----~~~--P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~ 129 (358)
|+ .+. |+.+++++++.....+ ...++.+++.+.+...
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 88 356 9999998777542222 2346889998888653
No 287
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.92 E-value=0.00013 Score=60.46 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY 211 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~ 211 (358)
.++++++.|| +.||+.|....+.+.++..+|... ++.++-|..+. +..+++.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 4678899999 999999999999999999998632 34444444432 34788899
Q ss_pred CC----Ccc--cEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270 212 GV----SGF--PTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 248 (358)
Q Consensus 212 ~v----~~~--Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 248 (358)
|+ .+. |+.+++.+++.....+ ..+++.+++...|...
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 98 355 9999998666633332 2347899998888543
No 288
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.90 E-value=3.7e-05 Score=59.64 Aligned_cols=71 Identities=21% Similarity=0.434 Sum_probs=45.2
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhh---cCccCCCeEEEccCCCCCcccc
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK---YGVQGYPTIQWFPKGSLEPKKY 113 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~---~~i~~~P~l~~~~~~~~~~~~~ 113 (358)
.+..++-|..+|||.|....|.+.++++.. +.+.+-.+.-+++.++..+ .|...+|++++++.++....++
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~---p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN---PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH----TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence 445778899999999999999999999975 3455555555666666554 4688999999998765543444
No 289
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.89 E-value=8.9e-05 Score=58.88 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=35.0
Q ss_pred CCCcEEEEEcCCC-CcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270 158 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202 (358)
Q Consensus 158 ~~~~v~v~f~a~~-C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~ 202 (358)
.++++++.||++| |++|+...|.+.++.+.+. ++.++.|+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 5789999999998 6999999999999999873 4666666664
No 290
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.89 E-value=0.0004 Score=54.02 Aligned_cols=108 Identities=17% Similarity=0.309 Sum_probs=79.7
Q ss_pred CCeEEcChhhH-HHHhcCCCcEEEEEECCC---Ch-hh-hhhhHHHHHHHHHhhcCCc-eEEEEEeCccchhhHhhcCcc
Q 018270 23 DDVVVLTEDNF-EKEVGQDRGALVEFYAPW---CG-HC-KKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQ 95 (358)
Q Consensus 23 ~~v~~l~~~~f-~~~~~~~~~~lv~fya~~---c~-~C-~~~~~~~~~~~~~~~~~~~-v~~~~vd~~~~~~l~~~~~i~ 95 (358)
..+++|+.+++ ++.-.++..=+|-|. |. |. .+ ......+.++|+.++ ++ +.|+.+|.++...+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l-~~~~d~~~e~~~~~~~~l~~vAk~~k--gk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFL-PHILDCQASCRNKYLEILKSVAEKFK--KKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEc-CccccCCHHHHHHHHHHHHHHHHHhc--CCcEEEEEEeCcccHHHHHHcCCC
Confidence 35778887665 444544443344454 42 22 23 456888999999998 55 999999999998899999995
Q ss_pred --CCCeEEEccCCCCCccc-ccCCCCHHHHHHHHhccCCCCc
Q 018270 96 --GYPTIQWFPKGSLEPKK-YEGPRSTEALAEYVNNEGGTNV 134 (358)
Q Consensus 96 --~~P~l~~~~~~~~~~~~-~~g~~~~~~i~~~i~~~~~~~~ 134 (358)
++|++++++..+.. +. +.|..+.+++.+|+++....+.
T Consensus 79 ~~~~P~v~i~~~~~~K-Y~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 79 GFGYPAMVAINFRKMK-FATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred ccCCCEEEEEecccCc-cccccCccCHHHHHHHHHHHHcCCc
Confidence 59999999886532 44 6799999999999999766554
No 291
>PRK15000 peroxidase; Provisional
Probab=97.88 E-value=0.00012 Score=61.51 Aligned_cols=89 Identities=13% Similarity=0.313 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270 158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 208 (358)
Q Consensus 158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 208 (358)
.++.+++.||+. ||+.|....+.+.+++++|+.. ++.++.+.++. ...++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 578999999995 9999999999999999999643 45555555542 12566
Q ss_pred HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHH
Q 018270 209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINE 247 (358)
Q Consensus 209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~ 247 (358)
+.||+. ++|+.+++.+.+.....+.| +++.+++...++.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 778876 68888888866664444333 4788888888864
No 292
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.88 E-value=4.5e-05 Score=60.59 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCCcEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270 39 QDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84 (358)
Q Consensus 39 ~~~~~lv~fya~~-c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 84 (358)
.+++++|.||+.| |++|+...|.+.++.++++ .+.++.|+.+.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence 4688999999998 6999999999999999874 46777777754
No 293
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.86 E-value=0.00019 Score=54.18 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=70.7
Q ss_pred EcCcccHHHHHhcCCCcEEEEEc----CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc----c
Q 018270 145 VLTADNFDEIVLDKSKDVLVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----F 216 (358)
Q Consensus 145 ~l~~~~f~~~~~~~~~~v~v~f~----a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~----~ 216 (358)
+++.+|..... ..+.++.|+ ++.-..-....+.+.++|+.++. +++.|+.+|.++.....+.||++. +
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 45667776664 333344433 22222345678899999999963 469999999998888999999984 9
Q ss_pred cEEEEEeCCCcceeeecCCC-CHHHHHHHHHHh
Q 018270 217 PTLKFFPKGNKDGEEYGGGR-DLEDFVSFINEK 248 (358)
Q Consensus 217 Pti~~~~~g~~~~~~~~g~~-~~~~l~~~i~~~ 248 (358)
|+++++..++ ..+...+.. +.++|.+|+++.
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9999987543 233356777 999999999764
No 294
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.85 E-value=0.00012 Score=52.47 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=55.1
Q ss_pred EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcC--CCcccEEEEEeCCCcceeeecCC
Q 018270 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYG--VSGFPTLKFFPKGNKDGEEYGGG 235 (358)
Q Consensus 162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~--v~~~Pti~~~~~g~~~~~~~~g~ 235 (358)
-++.|+.+||++|+.....++++...+ .++.+..+|++.+ .++....+ +.++|+++ -+|. . ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~-~---ig-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK-H---IG-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE-E---Ec--
Confidence 478899999999999999999998764 3566777777643 35666565 47899975 3442 1 12
Q ss_pred CCHHHHHHHHHHhcC
Q 018270 236 RDLEDFVSFINEKCG 250 (358)
Q Consensus 236 ~~~~~l~~~i~~~~~ 250 (358)
..+++.++++.+++
T Consensus 71 -g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 -GCTDFEAYVKENLG 84 (85)
T ss_pred -CHHHHHHHHHHhcc
Confidence 35788888877654
No 295
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.85 E-value=7.3e-05 Score=63.06 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=63.5
Q ss_pred CCCcEEE-EEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------------cchhhHh
Q 018270 39 QDRGALV-EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------------EHKSLCS 90 (358)
Q Consensus 39 ~~~~~lv-~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 90 (358)
.++.++| .|+++||+.|....+.|.+..++++.. .+.++.|.++ .+.++++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 3565554 689999999999999999999988743 3445544443 2345677
Q ss_pred hcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270 91 KYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE 129 (358)
Q Consensus 91 ~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~ 129 (358)
.||+. .+|+.+++++++...... .++++.+++...++..
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 78874 479999998777542222 4568899998888764
No 296
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.85 E-value=8.7e-05 Score=59.87 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=70.7
Q ss_pred ceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 143 VVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 143 v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
..++ +...|-+.+ ..+.-|++.||-|.-..|+-+...++.||+.+ ....|++||+...+=|+.+++|.-+|++.+
T Consensus 68 y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h---~eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH---VETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhc---ccceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 4445 467777766 57788999999999999999999999999986 467899999999999999999999999999
Q ss_pred EeCCCc
Q 018270 222 FPKGNK 227 (358)
Q Consensus 222 ~~~g~~ 227 (358)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999853
No 297
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.00011 Score=54.83 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=67.0
Q ss_pred hhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 30 EDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 30 ~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
....++++ ...+.++|.|-.+|.|.|.++...+..+++.+. +-..++.+|.++-+++.+-|++...|++++|-++.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 45566777 567889999999999999999999999999997 66888999999999999999999999999886554
No 298
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.84 E-value=0.00013 Score=58.39 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270 159 SKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202 (358)
Q Consensus 159 ~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~ 202 (358)
+++++|.|| ++||+.|....|.+.++.+.+.. .++.++.|..+
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 71 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD 71 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 377777777 99999999999999999999963 35666666554
No 299
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.82 E-value=0.00011 Score=58.00 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=35.9
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~ 202 (358)
.+++++|.|| +.||++|....|.+.++...+. ..++.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 6788999999 7899999999999999999985 335666666654
No 300
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.80 E-value=9.4e-05 Score=58.42 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 84 (358)
.+++++|.|| +.||+.|....|.+.++.++++. ..+.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 5789999999 78999999999999999999853 457777776653
No 301
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.80 E-value=0.00023 Score=53.65 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=73.5
Q ss_pred EEcChhhHHHHhcCCCcEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC----C
Q 018270 26 VVLTEDNFEKEVGQDRGALVEFY----APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG----Y 97 (358)
Q Consensus 26 ~~l~~~~f~~~~~~~~~~lv~fy----a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~ 97 (358)
..+|.+|..... ..+.++.|| +..-..-..+.+.+.++|+.+++ +++.|+.+|.++.....+.||+.. +
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 356778887764 334444444 23334557789999999999983 369999999998877889999984 9
Q ss_pred CeEEEccCCCCCcccccCCC-CHHHHHHHHhcc
Q 018270 98 PTIQWFPKGSLEPKKYEGPR-STEALAEYVNNE 129 (358)
Q Consensus 98 P~l~~~~~~~~~~~~~~g~~-~~~~i~~~i~~~ 129 (358)
|.+.+...++ ..+...+.. +.++|.+|+++.
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9999987544 224456777 999999999753
No 302
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.78 E-value=0.00016 Score=70.76 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=74.2
Q ss_pred EEcChhhHHHHhcCCCcEEEE-EECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270 26 VVLTEDNFEKEVGQDRGALVE-FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 104 (358)
Q Consensus 26 ~~l~~~~f~~~~~~~~~~lv~-fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 104 (358)
..++++..+.+-+=++++-|. |.+++|++|......+.+++... ++|..-.+|....++++++|+|-++|++++
T Consensus 461 ~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~---~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i-- 535 (555)
T TIGR03143 461 QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN---PNVEAEMIDVSHFPDLKDEYGIMSVPAIVV-- 535 (555)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC---CCceEEEEECcccHHHHHhCCceecCEEEE--
Confidence 455665555544445676555 57999999999999999998875 468888999999999999999999999987
Q ss_pred CCCCCcccccCCCCHHHHHHHH
Q 018270 105 KGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 105 ~~~~~~~~~~g~~~~~~i~~~i 126 (358)
++. ..+.|..+.+++.+||
T Consensus 536 ~~~---~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 DDQ---QVYFGKKTIEEMLELI 554 (555)
T ss_pred CCE---EEEeeCCCHHHHHHhh
Confidence 332 4577988999999886
No 303
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.75 E-value=0.00036 Score=50.02 Aligned_cols=96 Identities=17% Similarity=0.351 Sum_probs=73.7
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCcc----CCCe-EE
Q 018270 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQ----GYPT-IQ 101 (358)
Q Consensus 29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P~-l~ 101 (358)
+..+|..++.-...++|.|..+. ..-......+.++|+..++. -.++-|||.. .+++|+++.+. .-|. +.
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~--gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQ--GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCc--eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 34789998977788888887664 44556667889999999844 5667788876 78999999998 5553 45
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhc
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
-|.+|. .+..|+...+..++..|+..
T Consensus 85 HYKdG~-fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGD-FHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCC-ccccccchhhHHHHHHHhhC
Confidence 555555 45899999999999999874
No 304
>PRK15000 peroxidase; Provisional
Probab=97.75 E-value=0.00015 Score=61.01 Aligned_cols=89 Identities=13% Similarity=0.240 Sum_probs=63.2
Q ss_pred CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270 39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC 89 (358)
Q Consensus 39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (358)
++++++|.||+ .||+.|....+.|.+..++++.. ++.++.|.++. +.+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 57899999999 59999999999999999999753 35555555542 22456
Q ss_pred hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270 90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 128 (358)
Q Consensus 90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~ 128 (358)
+.||+. ..|..+++++.+.....+ .-.++.+++.+.++.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 667776 578888887766543322 234677888877764
No 305
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.75 E-value=0.00028 Score=68.56 Aligned_cols=98 Identities=11% Similarity=0.172 Sum_probs=77.6
Q ss_pred EEcChhhHHHHhcCCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270 26 VVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 104 (358)
Q Consensus 26 ~~l~~~~f~~~~~~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 104 (358)
..|+++..+.+-+=++++ +..|++++||+|......+.+++... +.|..-.+|....++++++|++.++|++++
T Consensus 101 ~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 175 (517)
T PRK15317 101 PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN---PNITHTMIDGALFQDEVEARNIMAVPTVFL-- 175 (517)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEEEEchhCHhHHHhcCCcccCEEEE--
Confidence 455555554444434454 77899999999999999999998864 578899999999999999999999999976
Q ss_pred CCCCCcccccCCCCHHHHHHHHhccCC
Q 018270 105 KGSLEPKKYEGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~ 131 (358)
++. ..+.|..+.+++.+.+.+..+
T Consensus 176 ~~~---~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 176 NGE---EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CCc---EEEecCCCHHHHHHHHhcccc
Confidence 332 458899999999999876544
No 306
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.72 E-value=0.00025 Score=61.00 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=68.3
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------ccHHHHHhcCCCcccEEEEEeCCCcc
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------KYKDLAEKYGVSGFPTLKFFPKGNKD 228 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~Pti~~~~~g~~~ 228 (358)
.+..-++.||.+-|++|.++.|++..+++.++ -.+..+.+|.. .+...++++||..+|++++...+...
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 35578999999999999999999999999985 24555555542 13457789999999999999877654
Q ss_pred eee-ecCCCCHHHHHHHHHHh
Q 018270 229 GEE-YGGGRDLEDFVSFINEK 248 (358)
Q Consensus 229 ~~~-~~g~~~~~~l~~~i~~~ 248 (358)
... -.|..+.++|.+=+...
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHH
Confidence 433 46788999987766544
No 307
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.70 E-value=0.00014 Score=62.67 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=59.1
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEE----------------------------------------
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG---------------------------------------- 78 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~---------------------------------------- 78 (358)
+++..++.|.-+.||+|+++.+++.++.+. + -.|.+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 456789999999999999999998876541 0 011111
Q ss_pred --EEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 79 --KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 79 --~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
..+.+++.++++++||+++|+++ +.+| ....|..+.+.|.++|.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence 11112345688999999999999 4444 2458999999999998753
No 308
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.67 E-value=0.00016 Score=49.80 Aligned_cols=67 Identities=16% Similarity=0.322 Sum_probs=42.8
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHh----cCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK----YGVSGFPTLKFFPKGNKDGEEYGGGRDL 238 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~----~~v~~~Pti~~~~~g~~~~~~~~g~~~~ 238 (358)
++.|+++||++|..+.+.+.+. ++.+..++++.+....+. .++.++|++++ +| .... +.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~-g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLS-GFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEe-cCCH
Confidence 5789999999999988877653 344555666654433333 36889999875 23 2223 3455
Q ss_pred HHHHHH
Q 018270 239 EDFVSF 244 (358)
Q Consensus 239 ~~l~~~ 244 (358)
+.|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 566554
No 309
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.65 E-value=0.00011 Score=60.65 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=55.6
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--------cc---HHHHH-hcCCCcccEEEEEeCC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KY---KDLAE-KYGVSGFPTLKFFPKG 225 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--------~~---~~l~~-~~~v~~~Pti~~~~~g 225 (358)
.+++++|.|||+||++|++ .|.++++.+.|+. .++.++.+.|+ .. ..+++ +|+++ +|.+-=..-
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~dv- 99 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIEV- 99 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEcc-
Confidence 5789999999999999975 8899999999964 46888888773 22 34554 57764 663321211
Q ss_pred CcceeeecCCCCHHHHHHHHHHhcC
Q 018270 226 NKDGEEYGGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 226 ~~~~~~~~g~~~~~~l~~~i~~~~~ 250 (358)
.+.....+-+|+.+.++
T Consensus 100 --------nG~~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 100 --------NGEGRHPLYQKLIAAAP 116 (183)
T ss_pred --------CCCCCCHHHHHHHHhCC
Confidence 12335567788887665
No 310
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.63 E-value=0.00027 Score=48.64 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=43.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhh----cCccCCCeEEEccCCCCCcccccCCCCH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK----YGVQGYPTIQWFPKGSLEPKKYEGPRST 119 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~P~l~~~~~~~~~~~~~~g~~~~ 119 (358)
++.|+++||++|..+.+.+.+. .+.+..+|.+.+....+. .++.++|++.+. + ....| .+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~--~----~~i~g-~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIG--D----EHLSG-FRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEEC--C----EEEec-CCH
Confidence 5789999999999988877652 245556676655544333 368899999862 2 12333 455
Q ss_pred HHHHHH
Q 018270 120 EALAEY 125 (358)
Q Consensus 120 ~~i~~~ 125 (358)
+.+.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 566554
No 311
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=5.5e-05 Score=62.63 Aligned_cols=75 Identities=23% Similarity=0.494 Sum_probs=65.1
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~ 235 (358)
.+.+..++.||++||.+|+++...+..+++.+ .++.+++++.+..++++..+.+...|.+.++..|.+ ..+..|.
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~-v~~l~~~ 89 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK-VDRLSGA 89 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh-hhhhhcc
Confidence 47788999999999999999999999999988 578999999999999999999999999999977643 3334443
No 312
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.62 E-value=0.00029 Score=59.56 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=59.5
Q ss_pred cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHhhcCc
Q 018270 42 GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGV 94 (358)
Q Consensus 42 ~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i 94 (358)
.+++.|+++||+.|....+.+.++.++++.. .+.++.|.++. +..+++.||+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 3456799999999999999999999999753 46666665542 2356777886
Q ss_pred c----C----CCeEEEccCCCCCccccc----CCCCHHHHHHHHhc
Q 018270 95 Q----G----YPTIQWFPKGSLEPKKYE----GPRSTEALAEYVNN 128 (358)
Q Consensus 95 ~----~----~P~l~~~~~~~~~~~~~~----g~~~~~~i~~~i~~ 128 (358)
. + .|+.+++++++.....+. ..++.+++.+.+..
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5 2 245777777765433322 25678888887765
No 313
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.60 E-value=0.00019 Score=51.42 Aligned_cols=76 Identities=24% Similarity=0.268 Sum_probs=53.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch----hhHhhcC--ccCCCeEEEccCCCCCcccccCC
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYG--VQGYPTIQWFPKGSLEPKKYEGP 116 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~P~l~~~~~~~~~~~~~~g~ 116 (358)
-++.|+.+||++|.+....++++..++ ..+.+..+|.+.+. ++.+..+ +..+|++++ +|. . . |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~-~---i-g- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQK-H---I-G- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCE-E---E-c-
Confidence 467899999999999999999998765 34677777777542 4555455 478999864 442 1 1 2
Q ss_pred CCHHHHHHHHhccC
Q 018270 117 RSTEALAEYVNNEG 130 (358)
Q Consensus 117 ~~~~~i~~~i~~~~ 130 (358)
..+++.+++....
T Consensus 71 -g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 -GCTDFEAYVKENL 83 (85)
T ss_pred -CHHHHHHHHHHhc
Confidence 3467777776554
No 314
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.60 E-value=0.00056 Score=57.79 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=61.1
Q ss_pred cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHHhcCC
Q 018270 161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEKYGV 213 (358)
Q Consensus 161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~v 213 (358)
.+++.|++.||+.|....+.+.+++..|+. .++.++.|.++. +..+++.||+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 456689999999999999999999999964 345555554442 2367888887
Q ss_pred C----c----ccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHh
Q 018270 214 S----G----FPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 248 (358)
Q Consensus 214 ~----~----~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~ 248 (358)
. + .|+.+++.++++....+.+ +++.+++...|...
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 5 2 3457777666554433333 57888898888664
No 315
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.59 E-value=0.00035 Score=60.20 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=59.4
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEE----------------------------------------
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA---------------------------------------- 197 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~---------------------------------------- 197 (358)
.++.+++.|..+.||+|+.+++.+.++.+. .-.+.+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 467789999999999999998887766431 0111111
Q ss_pred --EEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 198 --NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 198 --~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
..+++++..+++++||++.|+++ +.+| ....|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence 11112334899999999999988 6666 3457999999999999753
No 316
>PRK13189 peroxiredoxin; Provisional
Probab=97.57 E-value=0.00071 Score=57.88 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270 158 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 209 (358)
Q Consensus 158 ~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 209 (358)
.++ .+++.|++.||+.|....+.+.+++..|+. .++.++.|.++. ...+++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~-~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE-LNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 455 455678899999999999999999999963 344444444331 236778
Q ss_pred hcCCC-------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270 210 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 248 (358)
Q Consensus 210 ~~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 248 (358)
.||+. ..|+.+++.+.+...... ..+++.+++...|+..
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88875 468888887666532222 2467888998888754
No 317
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.56 E-value=0.00046 Score=60.11 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270 39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC 89 (358)
Q Consensus 39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (358)
+++++++.|| +.||+.|....+.|.+..+++...+ +.+..|.++. +.+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 4567888888 8999999999999999999987432 4444444332 24577
Q ss_pred hhcCcc-----CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270 90 SKYGVQ-----GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE 129 (358)
Q Consensus 90 ~~~~i~-----~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~ 129 (358)
+.||+. ..|+.+++++++.....+ ...++.+++.+.|+..
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 888875 479999998776543322 3467888888887653
No 318
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.53 E-value=0.00087 Score=56.99 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=64.6
Q ss_pred CCCc-EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270 158 KSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 209 (358)
Q Consensus 158 ~~~~-v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 209 (358)
.++. +++.|++.||+.|....+.+.+++.+|... ++.++.+.++. +..+++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 3454 578999999999999999999999999633 45555555542 125788
Q ss_pred hcCCC-------cccEEEEEeCCCcceee--e--cCCCCHHHHHHHHHHh
Q 018270 210 KYGVS-------GFPTLKFFPKGNKDGEE--Y--GGGRDLEDFVSFINEK 248 (358)
Q Consensus 210 ~~~v~-------~~Pti~~~~~g~~~~~~--~--~g~~~~~~l~~~i~~~ 248 (358)
.||+. ..|+.+++.++++.... | ..+++.+++...|...
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 88873 57999999876663332 2 2347889999888753
No 319
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.52 E-value=0.00095 Score=58.16 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 208 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 208 (358)
.++.+++.|| +.||++|....+.+.++.++|+.. ++.++.|.+|. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 4566777776 899999999999999999999633 34444444332 23688
Q ss_pred HhcCCC-----cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270 209 EKYGVS-----GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 248 (358)
Q Consensus 209 ~~~~v~-----~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 248 (358)
+.||+. ..|+.+++.+++.....+ ..+++.+++...|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 889985 479999998666633332 3457888888887643
No 320
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.52 E-value=0.00022 Score=60.05 Aligned_cols=77 Identities=23% Similarity=0.392 Sum_probs=54.0
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEE----------------------------------------
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG---------------------------------------- 78 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~---------------------------------------- 78 (358)
.++..++.|+.+.||+|+++.+.+.+. . +++.+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----A--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----c--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 357899999999999999999988751 1 112111
Q ss_pred -----EEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270 79 -----KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 79 -----~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
..+.+++..+++++||.++|+++ +.+|. .+.|..+.+++.++|
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 11222345688899999999997 55552 367888888887764
No 321
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.52 E-value=0.00023 Score=53.95 Aligned_cols=67 Identities=19% Similarity=0.445 Sum_probs=43.7
Q ss_pred cCCCcEEEEEcC-------CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-------HHHH--hcCCCcccEEE
Q 018270 157 DKSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAE--KYGVSGFPTLK 220 (358)
Q Consensus 157 ~~~~~v~v~f~a-------~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------~l~~--~~~v~~~Pti~ 220 (358)
..+++++|.|++ +|||.|....|.+++.-.... .+..++.+.+.+-+ .+.. +++++++||++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence 356788999985 499999999999998777653 35556555543221 2333 58999999999
Q ss_pred EEeCC
Q 018270 221 FFPKG 225 (358)
Q Consensus 221 ~~~~g 225 (358)
-+..+
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 99765
No 322
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.50 E-value=0.00041 Score=58.35 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=54.6
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHh------------------------------------cCCC---CeEEEE
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF------------------------------------TLED---DVVVAN 198 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~------------------------------------~~~~---~v~~~~ 198 (358)
.++..++.|+.+.|++|+++.+.+.+....+ .... ....+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~ 155 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD 155 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence 4678999999999999999887776410000 0000 011122
Q ss_pred EeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 199 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
.+.+.+..++.++||.+.|+++ +.+|. ...|..+.++|.++|
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 2233445899999999999997 76663 357888888887764
No 323
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.48 E-value=0.0011 Score=56.46 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCCcEE-EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270 158 KSKDVL-VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 209 (358)
Q Consensus 158 ~~~~v~-v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 209 (358)
.++.++ +.|++.||+.|....+.+.+++.+|+.. ++.++.+.++. +..+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 455544 5889999999999999999999999633 45555555442 125677
Q ss_pred hcCCC-------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270 210 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 248 (358)
Q Consensus 210 ~~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 248 (358)
.||+- ..|+.+++.+++.....+ .-+++.+++...|...
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78863 368888887766633322 2347999999988754
No 324
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.47 E-value=0.00081 Score=48.22 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=51.9
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCC--CcccEEEEEeCCCcceeeecCCC
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGV--SGFPTLKFFPKGNKDGEEYGGGR 236 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v--~~~Pti~~~~~g~~~~~~~~g~~ 236 (358)
++.|..+||++|.+....+.++.... ..+.+..+|++. ..++.+.+|- .++|++++ +|. ...
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~----~ig--- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK----HVG--- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE----Eec---
Confidence 57899999999999999888876543 245666667653 3357777774 78998743 341 122
Q ss_pred CHHHHHHHHHHhcC
Q 018270 237 DLEDFVSFINEKCG 250 (358)
Q Consensus 237 ~~~~l~~~i~~~~~ 250 (358)
..++|.++++++.+
T Consensus 70 G~~dl~~~~~~~~~ 83 (86)
T TIGR02183 70 GCTDFEQLVKENFD 83 (86)
T ss_pred CHHHHHHHHHhccc
Confidence 35788888877544
No 325
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.45 E-value=0.0014 Score=49.79 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=59.5
Q ss_pred hhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe-EEEc
Q 018270 30 EDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT-IQWF 103 (358)
Q Consensus 30 ~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~-l~~~ 103 (358)
.-..++++ ..++.++|.|-.+|-+.|.++...+.++++..+ +-..++.||.++-+++.+.|.+. -|. +.+|
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 45677777 678999999999999999999999999999997 67899999999999999999999 665 5555
No 326
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.40 E-value=0.0022 Score=51.92 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=63.1
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--cc--H---------------------------
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KY--K--------------------------- 205 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~--~--------------------------- 205 (358)
...+.+++.|+...|++|..+.+.+.++-+.+-..+++.+...+.- .. .
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3457789999999999999999999999888854567777666542 10 0
Q ss_pred -------------------------------------HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270 206 -------------------------------------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 206 -------------------------------------~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
.++.++||.+.||+++ +|. .+.|..+.+++.+.|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~----~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK----YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC----EEETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE----EeCCCCCHHHHHHHHcC
Confidence 5667789999999888 452 25788999999988864
No 327
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.39 E-value=0.0015 Score=63.45 Aligned_cols=96 Identities=14% Similarity=0.217 Sum_probs=75.8
Q ss_pred EEcChhhHHHHhcCCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270 26 VVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 104 (358)
Q Consensus 26 ~~l~~~~f~~~~~~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~ 104 (358)
..|+++..+.+-+=+++ -+-.|+++.||+|......+.+++... +.|..-.+|....++++++|++.++|++++
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 176 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN---PNISHTMIDGALFQDEVEALGIQGVPAVFL-- 176 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEEEchhCHHHHHhcCCcccCEEEE--
Confidence 55666655544443444 477899999999999999998888874 568888899999999999999999999986
Q ss_pred CCCCCcccccCCCCHHHHHHHHhcc
Q 018270 105 KGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 105 ~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
++. ..+.|..+.+++.+.+...
T Consensus 177 ~~~---~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 177 NGE---EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred CCc---EEEecCCCHHHHHHHHhhc
Confidence 332 4578989999888887655
No 328
>PRK13189 peroxiredoxin; Provisional
Probab=97.38 E-value=0.00087 Score=57.34 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=59.8
Q ss_pred CCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHh
Q 018270 39 QDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCS 90 (358)
Q Consensus 39 ~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 90 (358)
.++. +|+.|+++||+.|....+.|.+.+++++.. ++.++.|.++. +.++++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 3564 455778999999999999999999998743 35555554432 234567
Q ss_pred hcCcc-------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270 91 KYGVQ-------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 128 (358)
Q Consensus 91 ~~~i~-------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~ 128 (358)
.||+. ..|+.+++++++...... ...++.+++...|+.
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 77764 457788887766442221 245677888877765
No 329
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.34 E-value=0.001 Score=48.95 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=64.0
Q ss_pred ChhhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCcc-CCCeEE
Q 018270 29 TEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQ-GYPTIQ 101 (358)
Q Consensus 29 ~~~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~-~~P~l~ 101 (358)
|.+++++++.. .+|++|+=.+..||-+......|++...... +.+.++.+|.-+.++ ++++|||. .-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~--~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP--DEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC--ccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 46778888844 8899999999999999999999999998765 348999999988764 67899987 669999
Q ss_pred EccCCCCCcccccCCCCHHHH
Q 018270 102 WFPKGSLEPKKYEGPRSTEAL 122 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i 122 (358)
++++|.-....-.+..+.+.|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 999986443333345555544
No 330
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.34 E-value=0.00041 Score=49.15 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=38.9
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhcCCCcccEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTL 219 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pti 219 (358)
++.|+++||++|+.+.+.+.++... +.+..++.+.+ ..+.+..|..++|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 5789999999999999999987553 45667776543 235566788899986
No 331
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.34 E-value=0.00049 Score=50.92 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=63.9
Q ss_pred CCeEEcChhhHHHHhcCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270 23 DDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI 100 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l 100 (358)
.....++.++++..+..+...+++|..+. ++.|....=.+-++.+.+. +.+..+.++-..+..+..+||+..+|++
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCeE
Confidence 46778889999999977665555554432 3344444446777777776 5677777787788999999999999999
Q ss_pred EEccCCCCCcccccCCCC
Q 018270 101 QWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~ 118 (358)
++|+.|... ....|.++
T Consensus 87 vf~R~g~~l-G~i~gi~d 103 (107)
T PF07449_consen 87 VFFRDGRYL-GAIEGIRD 103 (107)
T ss_dssp EEEETTEEE-EEEESSST
T ss_pred EEEECCEEE-EEecCeec
Confidence 999987533 44445443
No 332
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.33 E-value=0.0037 Score=46.41 Aligned_cols=95 Identities=13% Similarity=0.233 Sum_probs=66.3
Q ss_pred eEc-CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 144 VVL-TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 144 ~~l-~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
..+ +..++++++ . .+..++|.|+..- -......|.++|..++ .++.|+. ..+.++...+++. .|++++
T Consensus 3 ~~i~~~~~~e~~~-~~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R--~d~~F~~---~~~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFE-NIEDDIKLIGYFKSE---DSEHYKAFEEAAEEFH--PYIKFFA---TFDSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHh-cccCCeEEEEEECCC---CCHHHHHHHHHHHhhh--cCCEEEE---ECcHHHHHHcCCC-CCcEEE
Confidence 344 445678887 4 5566666666542 2245678999999886 4566655 3455677888875 799999
Q ss_pred EeCCCcceeee-cCCCCHHHHHHHHHHh
Q 018270 222 FPKGNKDGEEY-GGGRDLEDFVSFINEK 248 (358)
Q Consensus 222 ~~~g~~~~~~~-~g~~~~~~l~~~i~~~ 248 (358)
+++.......| .|..+.+.|.+||...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 97644455678 7888999999999753
No 333
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.32 E-value=0.0013 Score=43.58 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=38.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 102 (358)
++.|..+||++|+.....|++ ..+.+-.+|.+.+++ +.+..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~--------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE--------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH--------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999999888842 336677777776643 333449999999986
No 334
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.32 E-value=0.0013 Score=55.97 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHhh
Q 018270 40 DRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSK 91 (358)
Q Consensus 40 ~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~ 91 (358)
++. +|+.|+++||+.|....+.|.++.+++... .+.++.+.++. +.++++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 455 467899999999999999999999998743 35666665543 2345667
Q ss_pred cCcc-------CCCeEEEccCCCCCccc--c--cCCCCHHHHHHHHhc
Q 018270 92 YGVQ-------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNN 128 (358)
Q Consensus 92 ~~i~-------~~P~l~~~~~~~~~~~~--~--~g~~~~~~i~~~i~~ 128 (358)
||+. ..|+.+++++++..... | ...++.+++.+.++.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 7763 56888888776644222 2 224677777777764
No 335
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.32 E-value=0.0018 Score=51.78 Aligned_cols=31 Identities=39% Similarity=0.662 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHh
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF 188 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~ 188 (358)
..+.+++.|+.++|++|+.+.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4577899999999999999999999877655
No 336
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.30 E-value=0.0039 Score=46.18 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=57.3
Q ss_pred ceEcCcccHHHHHhcCCCcEEEEEcCCCC---cccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219 (358)
Q Consensus 143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C---~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti 219 (358)
...++..+++.++ ......+ .|++.-| +.+....-++=+|.+.|. +.+..+.++.+.+..|..+||+..+|++
T Consensus 11 ~~~vd~~~ld~~l-~~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 11 WPRVDADTLDAFL-AAPGDAV-LFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp EEEE-CCCHHHHH-HCCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred CeeechhhHHHHH-hCCCcEE-EEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCeE
Confidence 5678899999998 4444444 4544444 444444557778888885 4667777777788899999999999999
Q ss_pred EEEeCCC
Q 018270 220 KFFPKGN 226 (358)
Q Consensus 220 ~~~~~g~ 226 (358)
++|++|.
T Consensus 87 vf~R~g~ 93 (107)
T PF07449_consen 87 VFFRDGR 93 (107)
T ss_dssp EEEETTE
T ss_pred EEEECCE
Confidence 9999884
No 337
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.30 E-value=0.00082 Score=44.48 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=37.1
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 221 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 221 (358)
++.|+.+||++|+.....+++. ++.+-.+|+++++ .+.+..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 4789999999999988877543 3556666666543 4555559999999775
No 338
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.29 E-value=0.00072 Score=47.88 Aligned_cols=79 Identities=28% Similarity=0.401 Sum_probs=59.1
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDF 241 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l 241 (358)
+++|..+.|+-|......+.+++... .+.+-.+|+++++.+.++|+. .+|.+.+-..++. ......+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 67899999999999998888765543 588999999999999999997 5997554432111 23455678899999
Q ss_pred HHHHH
Q 018270 242 VSFIN 246 (358)
Q Consensus 242 ~~~i~ 246 (358)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99874
No 339
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.25 E-value=0.0035 Score=46.73 Aligned_cols=91 Identities=22% Similarity=0.361 Sum_probs=63.1
Q ss_pred CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC-
Q 018270 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG- 225 (358)
Q Consensus 147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g- 225 (358)
+.++.++++ .....++|-|+..- -......|.++|..++ +++.|+. ..+..+.+++++ .|++++|++.
T Consensus 7 s~~~l~~f~-~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R--~d~~F~~---~~~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFL-SDDDASVVGFFEDE---DSKLLSEFLKAADTLR--ESFRFAH---TSDKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHh-ccCCcEEEEEEcCC---CchHHHHHHHHHHhhh--hcCEEEE---EChHHHHHhcCC--CCceEEEechh
Confidence 345567766 45666676776552 1246778999999885 4567765 344677889998 6888888431
Q ss_pred -----CcceeeecCCCCHHHHHHHHHHh
Q 018270 226 -----NKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 226 -----~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
......|.|..+.++|.+||...
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 22345699999999999999764
No 340
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.25 E-value=0.003 Score=53.18 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=62.3
Q ss_pred CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270 158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 208 (358)
Q Consensus 158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 208 (358)
.++.+++.||+ .||+.|....+.+.++++.|... ++.++.|.++. ..+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 46788889995 88999999999999999999643 45555555442 12577
Q ss_pred HhcCCC------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270 209 EKYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 248 (358)
Q Consensus 209 ~~~~v~------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 248 (358)
+.||+. .+|+.+++.+.+.....+ ..+++.++++..|...
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 888874 368888887666533322 2346777777777543
No 341
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.24 E-value=0.0011 Score=46.92 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=60.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC-CCcccccCCCCHHH
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEA 121 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~-~~~~~~~g~~~~~~ 121 (358)
.++.|..+.|+-|..+...+..+.... .+.+-.||.++++++..+|+. .+|.+.+=...+ .......+..+.+.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 368899999999999999998876543 488999999999999999995 899987754221 11244567889999
Q ss_pred HHHHHh
Q 018270 122 LAEYVN 127 (358)
Q Consensus 122 i~~~i~ 127 (358)
+.+||+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999874
No 342
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.23 E-value=0.00077 Score=48.36 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=51.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----hhhHhhcCc--cCCCeEEEccCCCCCcccccCCC
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGV--QGYPTIQWFPKGSLEPKKYEGPR 117 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~P~l~~~~~~~~~~~~~~g~~ 117 (358)
++.|..+|||+|.+....+.++.... ..+.+..+|.+.+ .++.+..+- ..+|++++ ++. +-|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~-----~ig-- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK-----HVG-- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE-----Eec--
Confidence 57889999999999999999876543 2356666676542 346666664 78999954 332 112
Q ss_pred CHHHHHHHHhccCC
Q 018270 118 STEALAEYVNNEGG 131 (358)
Q Consensus 118 ~~~~i~~~i~~~~~ 131 (358)
..+++.+++.+..+
T Consensus 70 G~~dl~~~~~~~~~ 83 (86)
T TIGR02183 70 GCTDFEQLVKENFD 83 (86)
T ss_pred CHHHHHHHHHhccc
Confidence 34778888776544
No 343
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0012 Score=48.90 Aligned_cols=65 Identities=20% Similarity=0.463 Sum_probs=50.0
Q ss_pred CCCcEEEEEcC--------CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------HHHHHhcCC-CcccEEEE
Q 018270 158 KSKDVLVEFYA--------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGV-SGFPTLKF 221 (358)
Q Consensus 158 ~~~~v~v~f~a--------~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~~l~~~~~v-~~~Pti~~ 221 (358)
+++.++|+|++ +|||.|....|.+.+.-+... .++.|+.+++.+- -.+....++ +++||++=
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 45559999986 499999999999999888654 5788888887643 245666677 88999988
Q ss_pred EeC
Q 018270 222 FPK 224 (358)
Q Consensus 222 ~~~ 224 (358)
+..
T Consensus 102 w~~ 104 (128)
T KOG3425|consen 102 WKR 104 (128)
T ss_pred EcC
Confidence 864
No 344
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.22 E-value=0.0046 Score=49.96 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=34.9
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~ 82 (358)
..+++++.|+...||+|..+.+.+.++.+.+-+.+.|.+...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45778999999999999999999999999883336677775544
No 345
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.22 E-value=0.0022 Score=55.91 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=58.3
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe--------------------------------------
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-------------------------------------- 81 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-------------------------------------- 81 (358)
.+.+++.|.-+.||+|+++.+.+..+.+. ++|.+..+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 45678899999999999999998776543 222221110
Q ss_pred --------C----ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270 82 --------C----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127 (358)
Q Consensus 82 --------~----~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~ 127 (358)
| +++..+++++|++++|++++-+..+ .+....|..+.++|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0 0123467789999999999987544 3356789999999988775
No 346
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.21 E-value=0.0018 Score=55.16 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=61.6
Q ss_pred CCCcEE-EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHh
Q 018270 39 QDRGAL-VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCS 90 (358)
Q Consensus 39 ~~~~~l-v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 90 (358)
.+++++ +.|+++||+.|....+.|.+.+++++.. ++.++.+.++. +.++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 355555 4788999999999999999999999743 35555555542 234566
Q ss_pred hcCcc-------CCCeEEEccCCCCCccc--c--cCCCCHHHHHHHHhcc
Q 018270 91 KYGVQ-------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNNE 129 (358)
Q Consensus 91 ~~~i~-------~~P~l~~~~~~~~~~~~--~--~g~~~~~~i~~~i~~~ 129 (358)
.||+. ..|+.+++++++..... + .-.++.+++...|+..
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77763 35788888877654222 1 2357888888888653
No 347
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.16 E-value=0.0011 Score=46.99 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=38.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----hhhHhhcCccCCCeEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----KSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~P~l~ 101 (358)
++.|+++|||+|..+.+.+.++... ..+..++.+.+ ..+.+..|..++|+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~ 58 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF 58 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 5789999999999999999987653 34555665543 2355667889999974
No 348
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.14 E-value=0.0025 Score=53.67 Aligned_cols=89 Identities=15% Similarity=0.217 Sum_probs=59.6
Q ss_pred CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270 39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC 89 (358)
Q Consensus 39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 89 (358)
.+++++|.||+ .||++|....+.+.++++++... .+.++.|+++. +.+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 36788899995 78999999999999999998753 46666665542 22456
Q ss_pred hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270 90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 128 (358)
Q Consensus 90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~ 128 (358)
+.||+. .+|+.+++++++.....+ ...++.+++.+.|..
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 677764 357777777666432211 234566667666654
No 349
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.14 E-value=0.0023 Score=45.94 Aligned_cols=96 Identities=22% Similarity=0.354 Sum_probs=69.7
Q ss_pred CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCC----cccE-E
Q 018270 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVS----GFPT-L 219 (358)
Q Consensus 147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~----~~Pt-i 219 (358)
+..+|.+++ .....|+|+|..+--.. ......+.++|+..++.+ .++.|||.+ ...||+++.|. .-|. +
T Consensus 8 d~KdfKKLL-RTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~g--T~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 8 DHKDFKKLL-RTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQG--TIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred chHHHHHHH-hhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCce--eEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 457888888 56677888888664222 223458889999887554 566677765 78999999998 4554 4
Q ss_pred EEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
.-|.+|. -...|.-..+...+++|+++
T Consensus 84 kHYKdG~-fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDGD-FHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccCCC-ccccccchhhHHHHHHHhhC
Confidence 4677773 56678888999999999864
No 350
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.0044 Score=46.40 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=66.1
Q ss_pred ccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270 149 DNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227 (358)
Q Consensus 149 ~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 227 (358)
...++.+. ...+.+++-|.-.|-+.|-++...+.+.++... .-..+.-+|+++-+++.+-|++...||+.+|-++.-
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 44455553 345788999999999999999999999999885 346788899999999999999999999998876654
Q ss_pred ceeee
Q 018270 228 DGEEY 232 (358)
Q Consensus 228 ~~~~~ 232 (358)
....+
T Consensus 90 mkiD~ 94 (142)
T KOG3414|consen 90 MKIDL 94 (142)
T ss_pred EEEee
Confidence 44444
No 351
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.10 E-value=0.012 Score=43.58 Aligned_cols=95 Identities=15% Similarity=0.274 Sum_probs=68.7
Q ss_pred EEc-ChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270 26 VVL-TEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 26 ~~l-~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~ 103 (358)
..+ +.++++.+++ .+..++|-|+..--. .....|.++|..++ .++.|+... +.++...+++. .|.++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH--PYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhh--cCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 344 5566888888 788888888876433 45678899999886 457776544 35666777765 6999999
Q ss_pred cCCCCCcccc-cCCCCHHHHHHHHhcc
Q 018270 104 PKGSLEPKKY-EGPRSTEALAEYVNNE 129 (358)
Q Consensus 104 ~~~~~~~~~~-~g~~~~~~i~~~i~~~ 129 (358)
++.......| .|..+.+.|.+||...
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 7633344678 7888999999999754
No 352
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.07 E-value=0.009 Score=44.50 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=66.9
Q ss_pred ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC--
Q 018270 29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-- 106 (358)
Q Consensus 29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~-- 106 (358)
+.++++.++..++.++|-|+..--. .....|.++|..++ .++.|+... +..+.+.+++ .|++++|++.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~ 76 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLR--ESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRL 76 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhh--hcCEEEEEC---hHHHHHhcCC--CCceEEEechhh
Confidence 4566778787888888888876433 46788889999886 457776555 3567788888 7888888541
Q ss_pred ----CCCcccccCCCCHHHHHHHHhcc
Q 018270 107 ----SLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 107 ----~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
......|.|..+.+.|.+||...
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 12235689988999999999754
No 353
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.02 E-value=0.0015 Score=45.98 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---HHHHHhcCCCcccEEE
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLK 220 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---~~l~~~~~v~~~Pti~ 220 (358)
....-++.|+.+||++|+.....+.+. ++.+-.+|++.+ ..+.+..|...+|.++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 345568899999999999998888654 233444555433 4566667889999875
No 354
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=97.02 E-value=0.00048 Score=59.96 Aligned_cols=128 Identities=23% Similarity=0.358 Sum_probs=94.0
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-CccchhhHhhcCccCCCeEEEccCCCCCcccccCC
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 116 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~ 116 (358)
++..++-+.||+.|||..+...|.++-....+. .+....++ ...-++...+|++.+.|++.+.... -+..|.|.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~ 148 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGE 148 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeeccc--cchhhccc
Confidence 346778999999999999999999998888775 23333332 2244678899999999999998765 34789999
Q ss_pred CCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHH
Q 018270 117 RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA 187 (358)
Q Consensus 117 ~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~ 187 (358)
++.+++.+|..+.++.... ++. .+...+....+|.+||++-.-..|...-+...
T Consensus 149 r~l~sLv~fy~~i~~~~v~----------ie~-------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 149 RDLASLVNFYTEITPMSVL----------IEI-------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred ccHHHHHHHHHhhccchhc----------ccc-------cCcccceeeeEeccccCcccccCcCCCcchhc
Confidence 9999999999887652110 110 12233788999999999888777765555443
No 355
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.93 E-value=0.0019 Score=44.01 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=35.8
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK 220 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~ 220 (358)
++.|+++||++|+...+.+.+.. +.+..+|++.+. .+.+..+...+|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 57899999999999998888663 445566666544 344455777889764
No 356
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.88 E-value=0.0034 Score=53.22 Aligned_cols=41 Identities=17% Similarity=0.507 Sum_probs=32.6
Q ss_pred CCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeC
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDC 82 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~ 82 (358)
+++.+|+|+...||||.++.+.+ ..+.+.+. +++.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~--~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP--EGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCC--CCCeEEEecc
Confidence 57889999999999999999976 78888876 4455555544
No 357
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.85 E-value=0.0084 Score=52.33 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=57.6
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC------------------------------------
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------------------------ 201 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~------------------------------------ 201 (358)
..+.+++.|+.+.|++|+++++.+.++.+. +++.+..+-.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 456789999999999999998776654332 1122111100
Q ss_pred --------------cccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270 202 --------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 202 --------------~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
+++..+..++||++.|++++-+..+ .+....|..++++|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0122588889999999988876433 5556789999999988763
No 358
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.83 E-value=0.0023 Score=44.08 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=43.4
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc---CCCcccEEEEEeCCCcceeeecCCCCHHH
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPKGNKDGEEYGGGRDLED 240 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~---~v~~~Pti~~~~~g~~~~~~~~g~~~~~~ 240 (358)
..|..++|++|+.....+.+. ++.+-.+|+++++...+.+ |..++|++++ +|. ..-|+.+++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHHH
Confidence 578889999999988877642 4556667777665544444 8788998644 332 1334566665
Q ss_pred HHH
Q 018270 241 FVS 243 (358)
Q Consensus 241 l~~ 243 (358)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 543
No 359
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.82 E-value=0.0038 Score=43.01 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=45.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhc---CccCCCeEEEccCCCCCcccccCCCCHHH
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY---GVQGYPTIQWFPKGSLEPKKYEGPRSTEA 121 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~~~~~~~~~~~~~g~~~~~~ 121 (358)
+.|..++|++|+.....|++ ..+.+-.+|.+++++....+ |..++|++++ +|. ..-|+.+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE--------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHHH
Confidence 56788999999999988873 34667778888776555544 8889999865 232 1234456665
Q ss_pred HHH
Q 018270 122 LAE 124 (358)
Q Consensus 122 i~~ 124 (358)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 554
No 360
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.80 E-value=0.0038 Score=42.47 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=36.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 102 (358)
++.|+++||++|+...+.+.+.. +.+..+|...+.+ +.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56788999999999999888553 4555677766543 344457788898753
No 361
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.76 E-value=0.005 Score=43.27 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---hhhHhhcCccCCCeEEE
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---KSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P~l~~ 102 (358)
.+.-++.|..+||++|......|.+. .+.+-.+|.+++ .++.+..|...+|.+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34457789999999999999988742 244555666554 34555678899999964
No 362
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.75 E-value=0.0024 Score=44.87 Aligned_cols=49 Identities=14% Similarity=0.400 Sum_probs=33.8
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL 219 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti 219 (358)
++.|+.+||++|......+++.. +.+-.+|++.++ ++.+..|..++|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~--------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG--------VTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC--------CCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 36788999999999998887642 334444555443 34445577889986
No 363
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.67 E-value=0.013 Score=41.32 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=49.3
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHH---HhcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA---EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 239 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~---~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~ 239 (358)
+..|..+||++|......+.+. ++.|-.+|++++++.. ...|...+|++++ ++ ..-++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-----~~~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-----LSWSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-----EEEecCCHH
Confidence 6788999999999988777542 4666677777655433 3457778998854 22 123478888
Q ss_pred HHHHHHHHh
Q 018270 240 DFVSFINEK 248 (358)
Q Consensus 240 ~l~~~i~~~ 248 (358)
.|.+.++..
T Consensus 68 ~l~~~~~~~ 76 (81)
T PRK10329 68 MINRLHPAP 76 (81)
T ss_pred HHHHHHHhh
Confidence 888887654
No 364
>PHA03050 glutaredoxin; Provisional
Probab=96.62 E-value=0.0064 Score=45.53 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---c----hhhHhhcCccCCCeEEE
Q 018270 33 FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---H----KSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 33 f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~P~l~~ 102 (358)
.++.+++++ ++.|..+|||+|......|.+..-.. ..+. .+|.++ . ..+.+..|...+|++++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYE--IVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 344555544 67789999999999998887654321 1233 344443 2 23555568889999954
No 365
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.59 E-value=0.0072 Score=43.82 Aligned_cols=59 Identities=31% Similarity=0.399 Sum_probs=42.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC--cc------------------------------chhhHhh
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC--DE------------------------------HKSLCSK 91 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~--~~------------------------------~~~l~~~ 91 (358)
++.|+.+.||+|..+.+.+.++..... +++.+..... .. +...+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 468999999999999999999975544 3454443332 21 1235677
Q ss_pred cCccCCCeEEEcc
Q 018270 92 YGVQGYPTIQWFP 104 (358)
Q Consensus 92 ~~i~~~P~l~~~~ 104 (358)
+|+.++|++++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999999865
No 366
>PHA03050 glutaredoxin; Provisional
Probab=96.57 E-value=0.005 Score=46.11 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=37.5
Q ss_pred EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-c----cHHHHHhcCCCcccEE
Q 018270 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-K----YKDLAEKYGVSGFPTL 219 (358)
Q Consensus 162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~----~~~l~~~~~v~~~Pti 219 (358)
-++.|..+|||+|+.....+.+..-.. ..+....++.. . ...+.+..|..++|++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 378999999999999988887764322 23445555431 1 2346666788899987
No 367
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.57 E-value=0.006 Score=42.23 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=34.5
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCC-cccEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GFPTLK 220 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~-~~Pti~ 220 (358)
++.|..+||++|......+.+. ++.+-.+|++.++ .+.+..|.. ++|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5688999999999988877753 3445556666543 344455766 899763
No 368
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.53 E-value=0.007 Score=41.76 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=35.7
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL 219 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti 219 (358)
++.|+.+||++|+.....+++. ++.+..+|++.++ ++.+..+-..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 6789999999999988877753 3445556666544 46666677889986
No 369
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.49 E-value=0.0065 Score=44.05 Aligned_cols=59 Identities=32% Similarity=0.424 Sum_probs=42.7
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe--Ccc------------------------------cHHHHHh
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--ADK------------------------------YKDLAEK 210 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd--~~~------------------------------~~~l~~~ 210 (358)
+..|+.+.|++|..+.+.+.++..... +++.+.... ... +..++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 367999999999999999999875543 344444433 221 1246778
Q ss_pred cCCCcccEEEEEe
Q 018270 211 YGVSGFPTLKFFP 223 (358)
Q Consensus 211 ~~v~~~Pti~~~~ 223 (358)
+|+.++|++++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998875
No 370
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.48 E-value=0.0043 Score=45.71 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=36.2
Q ss_pred cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-H----HHHHhcCCCcccEEEEEeCC
Q 018270 161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-K----DLAEKYGVSGFPTLKFFPKG 225 (358)
Q Consensus 161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~----~l~~~~~v~~~Pti~~~~~g 225 (358)
.-++.|..+|||+|.+....+.+..- .+....+|.+.. . .+.+..|...+|.+ |-+|
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i------~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGV------NPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 34788999999999999887776532 234455543322 2 23444467889986 4444
No 371
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.48 E-value=0.0096 Score=43.87 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh-------hHhhcCccCCCeEE
Q 018270 35 KEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS-------LCSKYGVQGYPTIQ 101 (358)
Q Consensus 35 ~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~P~l~ 101 (358)
+.+++++ ++.|..+|||+|.+....|.+.. +.+-.+|.+++++ +.+..|...+|+++
T Consensus 3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred hhhccCC--EEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 3454433 66788999999999988776542 3333455544422 33344678999984
No 372
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.48 E-value=0.011 Score=40.71 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=38.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 102 (358)
++.|+.+||++|+.....|++ ..+.+-.+|.++++. +.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~--------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE--------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 567889999999999888884 235566778776654 555567788999854
No 373
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.47 E-value=0.02 Score=42.21 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=59.8
Q ss_pred CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCC-cccEEE
Q 018270 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GFPTLK 220 (358)
Q Consensus 147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~-~~Pti~ 220 (358)
+.+++++++.. ..++++++=.++.|+-.......|++...... +++.++.+|.-+++ .++++|||. .-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~--~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP--DEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC--ccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 45677887743 36788888889999999998888888888764 23778888876554 688999997 589999
Q ss_pred EEeCCCcceeeecCCCCHHHH
Q 018270 221 FFPKGNKDGEEYGGGRDLEDF 241 (358)
Q Consensus 221 ~~~~g~~~~~~~~g~~~~~~l 241 (358)
++++|......-.+..+.++|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 999985333322334555444
No 374
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.39 E-value=0.008 Score=42.14 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=35.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhh----HhhcCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL----CSKYGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~P~l~~ 102 (358)
++.|..+|||+|......+.+. .+.+-.+|.+.+++. .+..|...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3568889999999999998743 244555566655443 34457889999854
No 375
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.34 E-value=0.015 Score=40.17 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=35.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH----hhcCcc-CCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQ-GYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~P~l~~ 102 (358)
++.|..++|++|......|.+. .+.+-.+|.+.+++.. +..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5678889999999998888742 2556667776654433 335666 8998853
No 376
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.33 E-value=0.016 Score=40.88 Aligned_cols=71 Identities=8% Similarity=0.151 Sum_probs=49.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH---hhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~ 120 (358)
++.|..+||++|......|++ ..|.+-.+|.+++++.. +..|...+|++++ ++ ... ++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~----~~~-~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD----LSW-SGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC----EEE-ecCCHH
Confidence 567888999999998888853 34677788888776533 3457789999975 22 122 357778
Q ss_pred HHHHHHhcc
Q 018270 121 ALAEYVNNE 129 (358)
Q Consensus 121 ~i~~~i~~~ 129 (358)
.+.+++...
T Consensus 68 ~l~~~~~~~ 76 (81)
T PRK10329 68 MINRLHPAP 76 (81)
T ss_pred HHHHHHHhh
Confidence 888777543
No 377
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.33 E-value=0.014 Score=48.06 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=80.1
Q ss_pred CCeEEcC-hhhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270 23 DDVVVLT-EDNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP 98 (358)
Q Consensus 23 ~~v~~l~-~~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 98 (358)
..|.+++ .+.|.+.+.+. -.++|++|-+.-+-|..+...+.-+|+.+ +.|.|.++-... .....+|..+.+|
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey---P~vKFckikss~-~gas~~F~~n~lP 213 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY---PIVKFCKIKSSN-TGASDRFSLNVLP 213 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC---CceeEEEeeecc-ccchhhhcccCCc
Confidence 3566664 57899988433 45789999999999999999999999999 678898887653 4466899999999
Q ss_pred eEEEccCCCCCcccc-------cCCCCHHHHHHHHhccCC
Q 018270 99 TIQWFPKGSLEPKKY-------EGPRSTEALAEYVNNEGG 131 (358)
Q Consensus 99 ~l~~~~~~~~~~~~~-------~g~~~~~~i~~~i~~~~~ 131 (358)
++.+|.+|..+ ..| -.......+..|++...-
T Consensus 214 ~LliYkgGeLI-gNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 214 TLLIYKGGELI-GNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred eEEEeeCCchh-HHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 99999888643 222 234566778888887643
No 378
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.30 E-value=0.079 Score=40.43 Aligned_cols=82 Identities=20% Similarity=0.363 Sum_probs=61.4
Q ss_pred cccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE-EEEEeCC
Q 018270 148 ADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT-LKFFPKG 225 (358)
Q Consensus 148 ~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt-i~~~~~g 225 (358)
+-..++.+. ...+.+++-|.-.|-+.|.++...+.+.|...+ .-..++.||+++-+++.+.|.+. -|. +.||-.+
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 344556553 567889999999999999999999999999885 45788899999999999999999 664 5566455
Q ss_pred Ccceeee
Q 018270 226 NKDGEEY 232 (358)
Q Consensus 226 ~~~~~~~ 232 (358)
+.....+
T Consensus 85 khm~vD~ 91 (133)
T PF02966_consen 85 KHMMVDF 91 (133)
T ss_dssp EEEEEES
T ss_pred eEEEEEe
Confidence 4334443
No 379
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.11 E-value=0.014 Score=40.08 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=42.0
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH---HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 239 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~ 239 (358)
++.|..+||+.|......+.+. ++.+-.+|++.+. .+....|...+|.+ |-+|. . . | ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~--~--i-g--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGE--L--I-G--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCE--E--E-e--CHH
Confidence 6789999999999998777753 2334455554332 34444688899986 44442 1 1 2 266
Q ss_pred HHHHHH
Q 018270 240 DFVSFI 245 (358)
Q Consensus 240 ~l~~~i 245 (358)
++.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 777665
No 380
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.04 E-value=0.06 Score=43.99 Aligned_cols=102 Identities=19% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270 23 DDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99 (358)
Q Consensus 23 ~~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~ 99 (358)
..|.+++..+|-.-+ +++-.|+|+.|...-+.|.-+...++.++.+| +.+.|+++-.+... .-|--...||
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~cI---pNYPe~nlPT 164 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF---PQIKFVKIPATTCI---PNYPESNLPT 164 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC---CcceEEeccccccc---CCCcccCCCe
Confidence 467888888876655 45666889999999999999999999999999 55666666544322 3345568899
Q ss_pred EEEccCCCCC-----cccccCC-CCHHHHHHHHhccC
Q 018270 100 IQWFPKGSLE-----PKKYEGP-RSTEALAEYVNNEG 130 (358)
Q Consensus 100 l~~~~~~~~~-----~~~~~g~-~~~~~i~~~i~~~~ 130 (358)
+++|..|... +..+.|. .+.+++..++-+..
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 9999877532 1233443 45777777776543
No 381
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.97 E-value=0.032 Score=40.92 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEE
Q 018270 169 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK 220 (358)
Q Consensus 169 ~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~ 220 (358)
||||+|......+.+.. +.+..+|+++++ .+.+..|...+|.++
T Consensus 25 ~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 25 PQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred CCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 99999999988887653 334456665444 344556777899864
No 382
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.92 E-value=0.018 Score=45.91 Aligned_cols=39 Identities=41% Similarity=0.528 Sum_probs=30.6
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEE
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~v 80 (358)
+.++.++.|+.++||+|+.+.|.+.++...+ +++.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~---~~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED---PDVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC---CCceEEEE
Confidence 3577899999999999999999999887665 33444433
No 383
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.84 E-value=0.026 Score=46.52 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=78.9
Q ss_pred CCceEc-CcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270 141 SNVVVL-TADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217 (358)
Q Consensus 141 ~~v~~l-~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 217 (358)
..|.++ +++.|...+... .-.++|..|-+.-+.|..+...+.=||..| +.+.|+++-.+ +....++|..+.+|
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey---P~vKFckikss-~~gas~~F~~n~lP 213 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY---PIVKFCKIKSS-NTGASDRFSLNVLP 213 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC---CceeEEEeeec-cccchhhhcccCCc
Confidence 357777 568888888322 245689999999999999999999999998 57899998765 34467899999999
Q ss_pred EEEEEeCCCcce------eeecCCCCHHHHHHHHHHh
Q 018270 218 TLKFFPKGNKDG------EEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 218 ti~~~~~g~~~~------~~~~g~~~~~~l~~~i~~~ 248 (358)
++++|++|.-.. ..+.....+.++..|+++.
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999885311 1223346777888888764
No 384
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.82 E-value=0.036 Score=37.99 Aligned_cols=66 Identities=18% Similarity=0.355 Sum_probs=42.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch---hhHhhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK---SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~ 120 (358)
++.|..+|||+|.+....+.+. .+.+-.+|.+++. .+....|...+|.+.+ +|. +-| ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~-----~ig--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGE-----LIG--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCE-----EEe--CHH
Confidence 6778899999999998888742 2445556665543 2334458889999843 332 112 256
Q ss_pred HHHHHH
Q 018270 121 ALAEYV 126 (358)
Q Consensus 121 ~i~~~i 126 (358)
++.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 666665
No 385
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.80 E-value=0.055 Score=44.38 Aligned_cols=32 Identities=28% Similarity=0.582 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhc
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT 189 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~ 189 (358)
.++..++.|+.+.||+|+.+.+.+..+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 56788999999999999999999999888763
No 386
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.031 Score=39.37 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=35.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----hhHhhc-CccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----SLCSKY-GVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~P~l~~ 102 (358)
++.|..++||+|......+.+ ..+.+..+|.+.+. +..++. |...+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567888999999999888872 33445555554443 344454 7899999886
No 387
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.025 Score=39.85 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=33.2
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhc-CCCcccEEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKY-GVSGFPTLKF 221 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~-~v~~~Pti~~ 221 (358)
++.|..++||+|+.....+.+. ++.+..++.+.. .+..++- |..++|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5788899999999988777743 333444443322 2344444 7889997654
No 388
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.61 E-value=0.0075 Score=52.71 Aligned_cols=88 Identities=23% Similarity=0.482 Sum_probs=70.2
Q ss_pred CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-CcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 236 (358)
+..++-..||+.||+..+...|.+.-...-|. .+....++ .....+..++|++.+.|++.+...- .+..|.|.+
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r 149 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGER 149 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeeccc--cchhhcccc
Confidence 35678899999999999999999988888774 22222222 1234578889999999999998754 778999999
Q ss_pred CHHHHHHHHHHhcC
Q 018270 237 DLEDFVSFINEKCG 250 (358)
Q Consensus 237 ~~~~l~~~i~~~~~ 250 (358)
+...|++|..+.++
T Consensus 150 ~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 150 DLASLVNFYTEITP 163 (319)
T ss_pred cHHHHHHHHHhhcc
Confidence 99999999999886
No 389
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.59 E-value=0.065 Score=39.25 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=40.6
Q ss_pred hHHHHhcCCCcEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270 32 NFEKEVGQDRGALVEFY----APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 102 (358)
Q Consensus 32 ~f~~~~~~~~~~lv~fy----a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 102 (358)
-.++.+++ ++++|+-. ++|||+|......|.+.. +.+..+|..++++ +.+..|...+|++++
T Consensus 4 ~v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 4 RIKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 34555655 45666654 389999999988887532 4455667765554 334457778999864
No 390
>PRK10638 glutaredoxin 3; Provisional
Probab=95.58 E-value=0.03 Score=39.66 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=34.8
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 221 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 221 (358)
++.|..+||++|......+++.. +.+..+|++.+. ++.+..|...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g--------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG--------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56788899999999988877542 334445555443 4555567788997633
No 391
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.17 Score=49.41 Aligned_cols=86 Identities=20% Similarity=0.402 Sum_probs=64.9
Q ss_pred CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hH--HHHHHHhcCCCCeEEEEEeCcccHHHHHhcC---
Q 018270 139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TY--EKVAAAFTLEDDVVVANLDADKYKDLAEKYG--- 212 (358)
Q Consensus 139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~--~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~--- 212 (358)
.|-+......+.|.+.- ..++|+++-.-.+||..|.-|.. .| .++|+.+ +.+++-++||.++-+++-+.|.
T Consensus 24 nPV~W~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~l--N~~FV~IKVDREERPDvD~~Ym~~~ 100 (667)
T COG1331 24 NPVDWYPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAIL--NENFVPVKVDREERPDVDSLYMNAS 100 (667)
T ss_pred CCccccccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHH--HhCceeeeEChhhccCHHHHHHHHH
Confidence 34455667888898876 78999999999999999998854 22 3566666 4689999999998877666663
Q ss_pred -----CCcccEEEEEeCCCc
Q 018270 213 -----VSGFPTLKFFPKGNK 227 (358)
Q Consensus 213 -----v~~~Pti~~~~~g~~ 227 (358)
--+.|--+|..++++
T Consensus 101 q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 101 QAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HHhccCCCCceeEEECCCCc
Confidence 447997777765543
No 392
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.50 E-value=0.15 Score=43.44 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=44.3
Q ss_pred cCCCeEEcChhh---HHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC
Q 018270 21 LADDVVVLTEDN---FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA 72 (358)
Q Consensus 21 ~~~~v~~l~~~~---f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~ 72 (358)
....+..++.++ +-+..++++|++|.|-+-.||+-..-.+.|.+++++|.+.
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 355688888766 5556689999999999999999999999999999999743
No 393
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.43 E-value=0.033 Score=45.82 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEcCCCCcccchhhhhHHHHHHHhcCC
Q 018270 165 EFYAPWCGHCKNLAPTYEKVAAAFTLE 191 (358)
Q Consensus 165 ~f~a~~C~~c~~~~~~~~~la~~~~~~ 191 (358)
.|..|.|+.|-...|.+.++...+...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 588999999999999999999998644
No 394
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.40 E-value=0.11 Score=43.98 Aligned_cols=31 Identities=23% Similarity=0.680 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcccchhhhhH---HHHHHHhc
Q 018270 159 SKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFT 189 (358)
Q Consensus 159 ~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~ 189 (358)
+++.+|.|+.-.|+||..+.|.+ ..+.+.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 45679999999999999998865 67777764
No 395
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.37 E-value=0.21 Score=37.34 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=59.1
Q ss_pred CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC-
Q 018270 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG- 225 (358)
Q Consensus 147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g- 225 (358)
+.++++.++......++|-|+..-- ......|.++|..++ +++.|+. ..+..+.+++++. .|.+++|.+.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~---~~~~~~F~~vA~~~R--dd~~F~~---t~~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEE---DPAYQLYQDAANSLR--EDYKFHH---TFDSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCC---CHHHHHHHHHHHhcc--cCCEEEE---EChHHHHHhcCCC-CCceEEECcHH
Confidence 3455677663332566666665421 246678999999885 4567755 3345777888886 5667777433
Q ss_pred -----CcceeeecCC-CCHHH-HHHHHHH
Q 018270 226 -----NKDGEEYGGG-RDLED-FVSFINE 247 (358)
Q Consensus 226 -----~~~~~~~~g~-~~~~~-l~~~i~~ 247 (358)
......|.|. .+.++ |..||++
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 2234678877 56656 9999975
No 396
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.29 E-value=0.07 Score=38.47 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=38.6
Q ss_pred HHhcCCCcEEEEEEC----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270 35 KEVGQDRGALVEFYA----PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 102 (358)
Q Consensus 35 ~~~~~~~~~lv~fya----~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 102 (358)
+.+++ ++++|+-.+ +||++|......|.+.. +.+-.+|..++++ +.+..|-..+|++++
T Consensus 3 ~~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 3 KLIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred hhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 34544 456666543 79999999888887543 4455566655544 344557889999844
No 397
>PRK10638 glutaredoxin 3; Provisional
Probab=95.29 E-value=0.061 Score=38.08 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=36.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~ 102 (358)
++.|..+||++|+.....+++. .+.+..+|.+++++ +.+..+...+|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5677789999999998888853 24455667765543 445567888998854
No 398
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.10 E-value=0.59 Score=34.25 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=76.0
Q ss_pred EcCcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH----HHHhcCCC-cccE
Q 018270 145 VLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVS-GFPT 218 (358)
Q Consensus 145 ~l~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~-~~Pt 218 (358)
.++..+.-+... +-....++.|--+-.+...++.+.+.++|+.+..++++.++.||-++.+- +-+.|+|. .-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 345555555552 22466788888888888999999999999999988999999999997753 44577776 3588
Q ss_pred EEEEeCCCccee--eecCC---CCHHHHHHHHHHh
Q 018270 219 LKFFPKGNKDGE--EYGGG---RDLEDFVSFINEK 248 (358)
Q Consensus 219 i~~~~~g~~~~~--~~~g~---~~~~~l~~~i~~~ 248 (358)
|=+.+-.....+ ...+. .++++|..||.+.
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 888764443333 33333 7899999999764
No 399
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.96 E-value=0.03 Score=40.42 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=29.3
Q ss_pred CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEE
Q 018270 169 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL 219 (358)
Q Consensus 169 ~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti 219 (358)
|||++|+.....+.+.. +.+-.+|++.+. .+.+..|-..+|++
T Consensus 21 ~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 21 PRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred CCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 79999999888877653 334444544333 45555688889986
No 400
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.81 E-value=0.43 Score=35.62 Aligned_cols=91 Identities=8% Similarity=0.093 Sum_probs=61.5
Q ss_pred ChhhHHHHhcCC-CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 29 ~~~~f~~~~~~~-~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
+.++++.++... ..++|-|+...-. .....|.++|..++ .++.|+... +..+.+.+++. .|.+++|++..
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R--dd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLR--EDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcc--cCCEEEEEC---hHHHHHhcCCC-CCceEEECcHH
Confidence 456677777665 7777777766433 46677889999887 557776555 34667788775 56677774432
Q ss_pred ------CCcccccCC-CCHHH-HHHHHhc
Q 018270 108 ------LEPKKYEGP-RSTEA-LAEYVNN 128 (358)
Q Consensus 108 ------~~~~~~~g~-~~~~~-i~~~i~~ 128 (358)
.....|+|. .+.++ |.+|++.
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 122567777 56656 9999975
No 401
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.56 E-value=0.062 Score=44.04 Aligned_cols=41 Identities=27% Similarity=0.492 Sum_probs=33.8
Q ss_pred CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe
Q 018270 39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD 81 (358)
Q Consensus 39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd 81 (358)
.+++.+++|+...||+|+.+.+.+..+..++. +++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~--~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP--KDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC--CCceEEEcC
Confidence 67889999999999999999999999998875 445554433
No 402
>PRK10824 glutaredoxin-4; Provisional
Probab=94.28 E-value=0.11 Score=39.14 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=38.2
Q ss_pred hHHHHhcCCCcEEEEEEC----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH----hhcCccCCCeEEE
Q 018270 32 NFEKEVGQDRGALVEFYA----PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQGYPTIQW 102 (358)
Q Consensus 32 ~f~~~~~~~~~~lv~fya----~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~P~l~~ 102 (358)
-.++.+++ .+++|+--. ||||+|......|.... +.+..+|.+++.++. +.-|-..+|.+++
T Consensus 7 ~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 7 KIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 34556655 556665554 69999999998887653 223334555444433 3346678888765
No 403
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.04 E-value=0.5 Score=38.80 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=74.7
Q ss_pred CCCceEcCcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270 140 PSNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217 (358)
Q Consensus 140 ~~~v~~l~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 217 (358)
-..|..+++..|-+-+... +--|+|..|...-+.|.-+.-.+..+|..| +.+.|+++-.+.. ...|--...|
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF---PQIKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC---CcceEEecccccc---cCCCcccCCC
Confidence 4558888988887777443 345788899999999999999999999999 5788988776543 1244456789
Q ss_pred EEEEEeCCCc-----ceeeecCC-CCHHHHHHHHHH
Q 018270 218 TLKFFPKGNK-----DGEEYGGG-RDLEDFVSFINE 247 (358)
Q Consensus 218 ti~~~~~g~~-----~~~~~~g~-~~~~~l~~~i~~ 247 (358)
|+++|..|.- -+..+.|. .+.+++..++.+
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9999988853 12344554 567777766654
No 404
>PRK10824 glutaredoxin-4; Provisional
Probab=93.75 E-value=0.12 Score=39.09 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEE
Q 018270 169 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 221 (358)
Q Consensus 169 ~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 221 (358)
||||+|+.....+.++...| .. +|.+++. .+.+.-|...+|.+++
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~------~~--idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERF------AY--VDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHcCCCc------eE--EEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 69999999988887764322 23 3444333 3333446667886443
No 405
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.18 Score=49.22 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhhHhhcC-----
Q 018270 22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYG----- 93 (358)
Q Consensus 22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~----- 93 (358)
.-++.....+.|..+-..++|++|-.-.+||.-|.-|..+= .++|+.++ ..++-++||-++-|++-..|.
T Consensus 25 PV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN--~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 25 PVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN--ENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH--hCceeeeEChhhccCHHHHHHHHHHH
Confidence 34678888999999999999999999999999999997754 68888887 568888999999888876664
Q ss_pred ---ccCCCeEEEccCCCC
Q 018270 94 ---VQGYPTIQWFPKGSL 108 (358)
Q Consensus 94 ---i~~~P~l~~~~~~~~ 108 (358)
--+.|-.+|+.++++
T Consensus 103 ~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hccCCCCceeEEECCCCc
Confidence 569999999988764
No 406
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=93.62 E-value=0.079 Score=43.58 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=21.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhc
Q 018270 46 EFYAPWCGHCKKLAPEYEKLGASFKK 71 (358)
Q Consensus 46 ~fya~~c~~C~~~~~~~~~~~~~~~~ 71 (358)
+|.-|.|+.|-...|.+.++...++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58899999999999999999999974
No 407
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.58 E-value=0.8 Score=39.07 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCCCCceEcCccc---HHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE
Q 018270 138 AVPSNVVVLTADN---FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199 (358)
Q Consensus 138 ~~~~~v~~l~~~~---f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v 199 (358)
...+.+..+++.+ +-++. .+++|.++.|-+-.||+-..-.+.|+++++.|....++.++.|
T Consensus 79 APns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 3556688888766 33333 6789999999998899999999999999999975445555543
No 408
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.32 Score=35.99 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=36.6
Q ss_pred cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-H----HHHhcCCCcccEEEE
Q 018270 161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-D----LAEKYGVSGFPTLKF 221 (358)
Q Consensus 161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-~----l~~~~~v~~~Pti~~ 221 (358)
.-+|.|..+||+.|..+...|.. + .....++.+|-..+. + +.+.-+-+.+|.+++
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~----~--~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSD----L--GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHh----C--CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 34678899999999998777776 2 345678888866432 3 333334557886443
No 409
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=2.1 Score=34.27 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270 158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202 (358)
Q Consensus 158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~ 202 (358)
.++.|++.|| ..+++.|-...-.|++...+|... +..+..|..|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~D 73 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPD 73 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 5668888888 478999999999999999888643 4555555554
No 410
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.80 E-value=0.31 Score=39.11 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCcEEEE-EECCCChhhhhh-hHHHHHHHHHhhcCCceEEEEEeCcc---chhhHhhcCc-cCCC
Q 018270 40 DRGALVE-FYAPWCGHCKKL-APEYEKLGASFKKAKSVLIGKVDCDE---HKSLCSKYGV-QGYP 98 (358)
Q Consensus 40 ~~~~lv~-fya~~c~~C~~~-~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i-~~~P 98 (358)
++++++. |-+.||+.|... .+.|.+..+++...+-..+..|.++. ...+++++++ ..+|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 3445544 557899999998 99999999998754421355555543 3457778776 2444
No 411
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.48 E-value=0.2 Score=47.08 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=35.1
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH---HHHh---------cCCCcccEEEE
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---LAEK---------YGVSGFPTLKF 221 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~v~~~Pti~~ 221 (358)
++.|..+|||+|+.....+.+. ++.+-.+|+++.+. +.++ .|..++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999987776654 35555666665442 2222 36778999855
No 412
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.97 Score=36.12 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270 39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82 (358)
Q Consensus 39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~ 82 (358)
.+++++++||- .++|-|....-.|.+...+++..+ ..+..|..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~-a~V~GIS~ 72 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG-AVVLGISP 72 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 46689999995 778899999999999999888654 44444433
No 413
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.94 E-value=0.36 Score=45.43 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=36.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH---hh---------cCccCCCeEEE
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SK---------YGVQGYPTIQW 102 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~i~~~P~l~~ 102 (358)
++.|..+|||+|......+.+. .|.+-.+|.++++... ++ .|...+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999888877742 3666677777665322 22 36789999976
No 414
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.73 E-value=0.76 Score=31.33 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=50.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~ 106 (358)
.+..|-+...+.++.....+.++-+.+. .+.+.+-.||..+++++++.++|-..||++=..+.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 3445556666888999888988888775 36789999999999999999999999998754443
No 415
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.70 E-value=1.9 Score=31.31 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270 40 DRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 40 ~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
.+++ ++.|..+. ..|.++...++++++.- +.+.+-..+... ..|++.+..++....++|.|...
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 3444 55555555 89999999998888764 445553332211 47999998776544588988777
Q ss_pred HHHHHHHHhc
Q 018270 119 TEALAEYVNN 128 (358)
Q Consensus 119 ~~~i~~~i~~ 128 (358)
=.++..||..
T Consensus 83 GhEf~Slila 92 (94)
T cd02974 83 GHEFTSLVLA 92 (94)
T ss_pred chhHHHHHHH
Confidence 7777777653
No 416
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=91.62 E-value=0.75 Score=36.90 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCcccchh-hhhHHHHHHHhcCCCCe-EEEEEeCc---ccHHHHHhcCC
Q 018270 160 KDVLVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDV-VVANLDAD---KYKDLAEKYGV 213 (358)
Q Consensus 160 ~~v~v~f~a~~C~~c~~~-~~~~~~la~~~~~~~~v-~~~~vd~~---~~~~l~~~~~v 213 (358)
..+++.|...||+.|... .+.|.+...+|...+ + .++.+..+ ....+++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCHHHHHHHHHhhCC
Confidence 344555557999999998 999999999986443 3 34444444 34567788777
No 417
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=1.2 Score=32.95 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=39.4
Q ss_pred hHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-hh----HhhcCccCCCeEEE
Q 018270 32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SL----CSKYGVQGYPTIQW 102 (358)
Q Consensus 32 ~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l----~~~~~i~~~P~l~~ 102 (358)
.+.+.+.++. +|.|-.+||++|..+...|.. +. ....+..+|-..+. ++ .+.-+-..+|.+++
T Consensus 6 ~v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISENP--VVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcCC--EEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3555565433 445778999999998888876 32 34556666665443 33 23334568888775
No 418
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=90.21 E-value=2.2 Score=35.99 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=47.3
Q ss_pred hhhHHHHhcCCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhh-cC-Cce--EEEEEeCcc-chhhHhhcCc-cCCCeEE
Q 018270 30 EDNFEKEVGQDRGALVEFYAPWCG-HCKKLAPEYEKLGASFK-KA-KSV--LIGKVDCDE-HKSLCSKYGV-QGYPTIQ 101 (358)
Q Consensus 30 ~~~f~~~~~~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~-~~-~~v--~~~~vd~~~-~~~l~~~~~i-~~~P~l~ 101 (358)
.+.|...--++++++|.|.=..|| -|-.....+..+.+++. +. .+| .++.+|-+. .++..++|.. ...|.+.
T Consensus 57 G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 57 GKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence 333444334789999999988888 79999999999988887 32 344 455555543 2566677765 3334333
No 419
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.61 E-value=5 Score=29.07 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=50.9
Q ss_pred CCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCC
Q 018270 159 SKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237 (358)
Q Consensus 159 ~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~ 237 (358)
.++| ++.|..+. ..|.++...++++|+.- +.+.+-..+.+. ..|++.+..+|....++|.|-..
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 3444 55666554 88999888888888754 344443322211 47999998777445689999988
Q ss_pred HHHHHHHHHH
Q 018270 238 LEDFVSFINE 247 (358)
Q Consensus 238 ~~~l~~~i~~ 247 (358)
-.++..||..
T Consensus 83 GhEf~Slila 92 (94)
T cd02974 83 GHEFTSLVLA 92 (94)
T ss_pred chhHHHHHHH
Confidence 8888888753
No 420
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=88.39 E-value=1.6 Score=30.93 Aligned_cols=75 Identities=12% Similarity=0.047 Sum_probs=57.0
Q ss_pred CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
..++=.|.+..-+.+++....+.++-+..-. +...+-.||..+++++++.++|-..||++=..+... -+.-|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~--rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPV--RKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCc--ceeecccc
Confidence 3455567788888999999999888776543 458888999999999999999999999875545432 34455543
No 421
>PRK09301 circadian clock protein KaiB; Provisional
Probab=88.06 E-value=1.7 Score=31.86 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=58.7
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270 40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
...++=.|.+..-+.+++....+.++-+.+-. +...+-.||..+++.+++.++|-..||++=..+... -+.-|..+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~--rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPV--RKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCc--ceeecccc
Confidence 34566678888889999999999888776544 458888999999999999999999999875545432 34556553
No 422
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=3.9 Score=35.41 Aligned_cols=39 Identities=33% Similarity=0.447 Sum_probs=30.0
Q ss_pred cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
+..++.++||.+.||+++-.. .+.|..+.++|.+.|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGK------LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCe------eecCCCCHHHHHHHHHHh
Confidence 346788899999999777532 678888888888887653
No 423
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.93 E-value=1.7 Score=34.42 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=34.1
Q ss_pred EEEEcCC------CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCC----CcccEEEE
Q 018270 163 LVEFYAP------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGV----SGFPTLKF 221 (358)
Q Consensus 163 ~v~f~a~------~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v----~~~Pti~~ 221 (358)
+|.|+++ +|++|......|+.. .+.+-.+|++.+. +|.+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4677778 899999988877754 3556667776443 45555554 56886543
No 424
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.06 E-value=4.7 Score=31.18 Aligned_cols=23 Identities=9% Similarity=0.288 Sum_probs=20.8
Q ss_pred cHHHHHhcCCCcccEEEEEeCCC
Q 018270 204 YKDLAEKYGVSGFPTLKFFPKGN 226 (358)
Q Consensus 204 ~~~l~~~~~v~~~Pti~~~~~g~ 226 (358)
++.+.++|+|+.+|++++.+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 68899999999999999998763
No 425
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.03 E-value=16 Score=28.38 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=49.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc----CCCeEEEccCCCCCcccccCCCC
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ----GYPTIQWFPKGSLEPKKYEGPRS 118 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~P~l~~~~~~~~~~~~~~g~~~ 118 (358)
-++.|++|.|+=|......++ . +.+.+-.+..++-..+-+++||. +==|.++ +| ...+|-..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk----~----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHVP 92 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK----A----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHVP 92 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH----h----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccCC
Confidence 577899999999977666655 1 33555556666666666778764 2223332 22 45678889
Q ss_pred HHHHHHHHhccC
Q 018270 119 TEALAEYVNNEG 130 (358)
Q Consensus 119 ~~~i~~~i~~~~ 130 (358)
.+.|..++.+..
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 999999998764
No 426
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.93 E-value=4 Score=27.93 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=43.2
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~ 242 (358)
+.+|+.+.|+.|+...-.+.+..-.| .+..+|.....++ +.-+...+|++..-..|+.. .. .+...+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y------~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~l----~eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY------EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-QL----VDSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce------EEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-EE----EcHHHHH
Confidence 45788899999999886666553333 3334443322333 23345568987643211111 11 3467888
Q ss_pred HHHHHhcC
Q 018270 243 SFINEKCG 250 (358)
Q Consensus 243 ~~i~~~~~ 250 (358)
+|+.+.+|
T Consensus 70 ~yL~~~~~ 77 (77)
T cd03040 70 STLKTYLG 77 (77)
T ss_pred HHHHHHcC
Confidence 88887654
No 427
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.62 E-value=7.8 Score=30.05 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc----ccEEEEEeCCCcceeeecCCC
Q 018270 161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----FPTLKFFPKGNKDGEEYGGGR 236 (358)
Q Consensus 161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~----~Pti~~~~~g~~~~~~~~g~~ 236 (358)
.-++.|+.|.|+-|......++. ..+.+-.+..++...+-+++||.. =-|.++ +| ...+|..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccC
Confidence 35788999999999987665551 256677777788888888999862 233332 23 4568899
Q ss_pred CHHHHHHHHHHhc
Q 018270 237 DLEDFVSFINEKC 249 (358)
Q Consensus 237 ~~~~l~~~i~~~~ 249 (358)
.++++..++++.-
T Consensus 92 Pa~aI~~ll~~~p 104 (149)
T COG3019 92 PAEAIARLLAEKP 104 (149)
T ss_pred CHHHHHHHHhCCC
Confidence 9999999998754
No 428
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=84.53 E-value=3.3 Score=28.25 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=47.4
Q ss_pred EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEe
Q 018270 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 223 (358)
Q Consensus 162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~ 223 (358)
.+.+|-+...+...+....+.++-+.+. .+.+.+=.+|..+++.+++.++|-..||++=..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 4566767666666666667777666665 568888899999999999999999999977443
No 429
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=82.70 E-value=3.1 Score=34.02 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=37.9
Q ss_pred EcChhhHHHHhcCCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcC-CceEEEEEeCc
Q 018270 27 VLTEDNFEKEVGQDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKA-KSVLIGKVDCD 83 (358)
Q Consensus 27 ~l~~~~f~~~~~~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~ 83 (358)
+-+.+.|...--.+++++|.|.-..|+ .|-.....+.++.+.+... .++.++.|-.|
T Consensus 39 d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 39 DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 333333433323689999999888997 7999999999998887653 35555555443
No 430
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=81.29 E-value=3.2 Score=27.95 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=32.8
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHHhcCCCcccEEE
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~Pti~ 220 (358)
++|+.+||+.|.+..-.+.+..- .+....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999988766665533 34455666442 34555555566789874
No 431
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.18 E-value=2 Score=32.05 Aligned_cols=29 Identities=21% Similarity=0.621 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCcccchhhhhHHHHHHHh
Q 018270 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAF 188 (358)
Q Consensus 160 ~~v~v~f~a~~C~~c~~~~~~~~~la~~~ 188 (358)
+.++++|..|.|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998887766
No 432
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=81.00 E-value=6 Score=31.36 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=33.7
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCc----cCCCeEEE
Q 018270 44 LVEFYAP------WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGV----QGYPTIQW 102 (358)
Q Consensus 44 lv~fya~------~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i----~~~P~l~~ 102 (358)
+|.|+++ +|++|......|+.. .|.+-.+|.+.+++ +.+..+- ..+|++++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3455566 899999888888743 36667778776654 3334443 57888765
No 433
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=80.81 E-value=22 Score=27.73 Aligned_cols=91 Identities=7% Similarity=-0.008 Sum_probs=60.8
Q ss_pred hcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccch------------------hhHhhcCcc
Q 018270 37 VGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHK------------------SLCSKYGVQ 95 (358)
Q Consensus 37 ~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~------------------~l~~~~~i~ 95 (358)
.++.|+++|+.+++....+..+-... +.+.+-++ .++.+-.-|.+... ...+.++..
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~ 95 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD 95 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC
Confidence 45689999999998875554443333 44555555 44666666665432 234567899
Q ss_pred CCCeEEEccCCCC---CcccccCCCCHHHHHHHHhcc
Q 018270 96 GYPTIQWFPKGSL---EPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 96 ~~P~l~~~~~~~~---~~~~~~g~~~~~~i~~~i~~~ 129 (358)
.+|.+.+...... ...+.+|..+++++.+-+...
T Consensus 96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 9999988854432 234668999999999877653
No 434
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=80.46 E-value=5.4 Score=30.05 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270 176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 224 (358)
Q Consensus 176 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~ 224 (358)
.+.+.+..+.+.....+.. .+..=++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4555555555554333222 22223588999999999999999987
No 435
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=80.35 E-value=11 Score=34.92 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=67.3
Q ss_pred hhHHHHh---cCCCcEEEEEECCCChhhhhhh-HHHH-HHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEEEc
Q 018270 31 DNFEKEV---GQDRGALVEFYAPWCGHCKKLA-PEYE-KLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWF 103 (358)
Q Consensus 31 ~~f~~~~---~~~~~~lv~fya~~c~~C~~~~-~~~~-~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~ 103 (358)
.++.+.| +.++.++|.|-+......+.+. -.|. +..... ....++.++|+... ...++.-|-+..+|++++.
T Consensus 6 GnipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~-ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffI 84 (506)
T KOG2507|consen 6 GNIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDS-LSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFI 84 (506)
T ss_pred cchHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhh-hhcceEEEEeccCchhhhhhhhhcccccccceeee
Confidence 4555555 5677788888888888888887 3343 333222 12456666776643 3456778889999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHhc
Q 018270 104 PKGSLEPKKYEGPRSTEALAEYVNN 128 (358)
Q Consensus 104 ~~~~~~~~~~~g~~~~~~i~~~i~~ 128 (358)
...|.......|...++++..-|..
T Consensus 85 g~sGtpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 85 GFSGTPLEVITGFVTADELASSIEK 109 (506)
T ss_pred cCCCceeEEeeccccHHHHHHHHHH
Confidence 8777555677898899998877665
No 436
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=79.75 E-value=0.93 Score=33.59 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=43.1
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcccEEEEEeCCCccee----eecCC
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKFFPKGNKDGE----EYGGG 235 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~Pti~~~~~g~~~~~----~~~g~ 235 (358)
..|+.|+|+.|+.....+++. ++.+-.+|..+ ..++.+..+-.+.+.--+++..+.... .-...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578899999999987666654 23333444432 234444444433333334433322111 10245
Q ss_pred CCHHHHHHHHHHhcC
Q 018270 236 RDLEDFVSFINEKCG 250 (358)
Q Consensus 236 ~~~~~l~~~i~~~~~ 250 (358)
.+.+++.++|.++-.
T Consensus 74 ls~~e~~~~l~~~p~ 88 (105)
T cd02977 74 LSDEEALELMAEHPK 88 (105)
T ss_pred CCHHHHHHHHHhCcC
Confidence 678888888876533
No 437
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.39 E-value=1.7 Score=29.53 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=33.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----------------hhhHhhcCccCCCeEEE
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----------------KSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------~~l~~~~~i~~~P~l~~ 102 (358)
+.|++..||.|..+..+++.+.-.| -.|+.... =+-.+.+|--++|++.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y--------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~ 70 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY--------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT 70 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc--------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe
Confidence 7899999999998888887654443 23333322 12346677778899876
No 438
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.79 E-value=4 Score=30.44 Aligned_cols=30 Identities=20% Similarity=0.592 Sum_probs=25.7
Q ss_pred CcEEEEEECCCChhhhhhhHHHHHHHHHhh
Q 018270 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFK 70 (358)
Q Consensus 41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~ 70 (358)
+.+++.|--|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999877776663
No 439
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.59 E-value=15 Score=24.90 Aligned_cols=75 Identities=11% Similarity=0.103 Sum_probs=42.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 123 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~ 123 (358)
+..|+.+.|+.|+...-.+....-. .....+|.....++ +..+...+|++..=..++.. . -.+...|.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~----l~eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-Q----LVDSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-E----EEcHHHHH
Confidence 3467788999999988666644322 22223343222333 34566789988753211111 1 23456777
Q ss_pred HHHhccC
Q 018270 124 EYVNNEG 130 (358)
Q Consensus 124 ~~i~~~~ 130 (358)
+|+.+..
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 8877653
No 440
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=76.08 E-value=1.9 Score=30.38 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=46.0
Q ss_pred EECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccC
Q 018270 47 FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 105 (358)
Q Consensus 47 fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~ 105 (358)
|-+..-+.+......+..+.+..- .+.+.+-.||..+++++++.++|-..||++=..+
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~P 60 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL-GGRYELEVIDVLEQPELAEEDRIVATPTLIKESP 60 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC-TTTEEEEEEETTTSHSHHTTTEEECHHHHHTTSS
T ss_pred EECCCChHHHHHHHHHHHHHHhhC-CCcEEEEEEEcccCHhHHhHCCeeecceEeeccC
Confidence 444555667888888888887643 2679999999999999999999999999874433
No 441
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=75.70 E-value=10 Score=28.48 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccC
Q 018270 57 KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 105 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~ 105 (358)
.+.+....+.+.....+.. .+..=++.+.++|+|+.+|++++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 6666666666655433222 22223599999999999999999876
No 442
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=75.58 E-value=8.4 Score=29.79 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=34.0
Q ss_pred chhhHhhcCccCCCeEEEccCCC----------CCcccccCCCCHHHHHHHHhcc
Q 018270 85 HKSLCSKYGVQGYPTIQWFPKGS----------LEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 85 ~~~l~~~~~i~~~P~l~~~~~~~----------~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
++.+.++|+|+.+|++++..++. .......|..+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 59999999999999999997663 0113445888888777777654
No 443
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=75.32 E-value=4.3 Score=26.45 Aligned_cols=52 Identities=12% Similarity=0.124 Sum_probs=31.6
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH--HHHHhcCCCcccEEEE
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK--DLAEKYGVSGFPTLKF 221 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pti~~ 221 (358)
.+|+.++|+.|....-.+....-. +....++..... .+.+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 367789999999887666655332 344445543222 2444556667897653
No 444
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=74.88 E-value=19 Score=33.46 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=61.1
Q ss_pred cCCCcEEEEEcCCCCcccchhh-hhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCCCcceeeec
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLA-PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~-~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~ 233 (358)
..++.+||.|-+.--.....+. -.|......-.....++-++|+.. ....++.-|.+..+|+++|+...|.......
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4567788888876544444443 123222111111246788888865 3456788889999999999987776667778
Q ss_pred CCCCHHHHHHHHHHh
Q 018270 234 GGRDLEDFVSFINEK 248 (358)
Q Consensus 234 g~~~~~~l~~~i~~~ 248 (358)
|-.++++|..-|.+.
T Consensus 96 g~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 96 GFVTADELASSIEKV 110 (506)
T ss_pred ccccHHHHHHHHHHH
Confidence 888899888776553
No 445
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=74.64 E-value=4.8 Score=27.65 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=40.2
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 240 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~ 240 (358)
+.+++.++|+.|....-.+.+..-.| ....++... .+++.+.-+-..+|+++. .+|+. .. .....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y------~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~--~l----~es~~ 68 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDV------ILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV--QM----FESAD 68 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcE------EEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe--EE----EcHHH
Confidence 35677899999998876666553333 333333221 234443334456898743 22221 11 34677
Q ss_pred HHHHHHHh
Q 018270 241 FVSFINEK 248 (358)
Q Consensus 241 l~~~i~~~ 248 (358)
+..|+.+.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 77777653
No 446
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=74.62 E-value=17 Score=31.44 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcCCce----EEEEEeCc
Q 018270 39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKAKSV----LIGKVDCD 83 (358)
Q Consensus 39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~~~v----~~~~vd~~ 83 (358)
.++.++++|--+.|| -|=.....+.++.++++....+ .|+.+|-+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 367899999999999 5888888888888877654322 46677763
No 447
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.48 E-value=6 Score=26.60 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=33.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-chhhHhhcCccCCCeEEE
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P~l~~ 102 (358)
+.|+.++|++|++..-.+.+..- .+.+..+|... ..++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 45778999999888766664432 24444555543 245555566778899863
No 448
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=74.31 E-value=6.2 Score=32.48 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=30.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~ 82 (358)
.+.+||...||+|....+.+.++.+.+.+ -.|.+..+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~-~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD-VEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT-CEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CcEEEecccc
Confidence 36789999999999999999999999832 3455555544
No 449
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=74.18 E-value=13 Score=26.47 Aligned_cols=75 Identities=17% Similarity=0.053 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCC
Q 018270 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237 (358)
Q Consensus 160 ~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~ 237 (358)
..++=+|.+...+..++....+.++-+... .+.+.+=.+|..+++.+++.++|-..||++=-.++ ...+.-|+.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l-~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~--P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEF-QGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP--PVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhc-CCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC--Ccceeecccc
Confidence 345667777777777777667777666554 34588888999999999999999999997744433 2345556543
No 450
>PRK09301 circadian clock protein KaiB; Provisional
Probab=73.84 E-value=13 Score=27.38 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCC
Q 018270 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237 (358)
Q Consensus 159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~ 237 (358)
+..++=+|.+..-+..++....+.++-+.+.. +.+.+=.||..+++.+++.++|-..||++=..+. ...+..|+.+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~--P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPP--PVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC--Ccceeecccc
Confidence 45677788888777777777777777665543 4588888999999999999999999997744333 3345566643
No 451
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.81 E-value=9.3 Score=32.51 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=35.1
Q ss_pred HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 253 (358)
Q Consensus 206 ~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 253 (358)
..+.+.||+++|++++ +| .+...|..+.+.+..-|.+..+...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~---~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DG---KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cC---cEeecCCCCHHHHHHHHHHHHhccc
Confidence 5678999999999998 33 2556899999999999998876554
No 452
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.23 E-value=81 Score=29.02 Aligned_cols=175 Identities=12% Similarity=0.189 Sum_probs=111.1
Q ss_pred CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270 41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120 (358)
Q Consensus 41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~ 120 (358)
.++.+.--.+....++++...+++++..- +.+.+-.. . ....-|.+.+=++|.....+|.|..---
T Consensus 19 ~~i~l~asldds~~s~~~~~ll~eia~~S---~kis~~~~-----~------~~~RkpSF~i~r~g~~~gv~FAglPlGH 84 (520)
T COG3634 19 QPIELVASLDDSEKSKEIKELLDEIASLS---DKISLEED-----S------DLVRKPSFSINRPGEDQGVRFAGLPLGH 84 (520)
T ss_pred CCeEEEEecCcccccHHHHHHHHHHHhhc---cceeeeec-----C------ccccCCceeecCCCcccceEEecCcccc
Confidence 45555555566677888888888888764 33443221 1 2235688888888876667887754333
Q ss_pred HHHHH---HhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEE
Q 018270 121 ALAEY---VNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197 (358)
Q Consensus 121 ~i~~~---i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~ 197 (358)
++..+ +.+-.+..++ ++.+-.+++-.-.+...|=-|++-.|..|......+.-++-. ++++.-.
T Consensus 85 EftSlVLaLlqv~G~ppk----------~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl---Np~I~H~ 151 (520)
T COG3634 85 EFTSLVLALLQVGGHPPK----------EDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL---NPRIKHT 151 (520)
T ss_pred hHHHHHHHHHHhcCCCCc----------hhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc---CCCceeE
Confidence 44443 3333333222 334444554434566677788888899999988777766653 4788888
Q ss_pred EEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270 198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247 (358)
Q Consensus 198 ~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 247 (358)
.+|-...++-.+.-+|-++||+++ +|.. --.|..+.+++..-|..
T Consensus 152 ~IdGa~Fq~Evear~IMaVPtvfl--nGe~---fg~GRmtleeilaki~~ 196 (520)
T COG3634 152 AIDGALFQDEVEARNIMAVPTVFL--NGEE---FGQGRMTLEEILAKIDT 196 (520)
T ss_pred EecchhhHhHHHhccceecceEEE--cchh---hcccceeHHHHHHHhcC
Confidence 888776666666778889999655 3421 12566788888877653
No 453
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.13 E-value=6.5 Score=26.99 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=38.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHH
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i 122 (358)
..++.++|++|++..-.+.+..-.+ .+..++-.. ..++.+..+-..+|+++. .+++ . . ......|
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi~y------~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~-~-~----l~es~~I 69 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELELDV------ILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTG-V-Q----MFESADI 69 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCCcE------EEEECCCChHHHHHHHHhCCCCcccEEEe-CCCC-e-E----EEcHHHH
Confidence 4567789999998776666443222 222222221 234444445678898853 2222 1 1 2345677
Q ss_pred HHHHhc
Q 018270 123 AEYVNN 128 (358)
Q Consensus 123 ~~~i~~ 128 (358)
.+|+.+
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 777765
No 454
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.83 E-value=6.5 Score=33.42 Aligned_cols=43 Identities=16% Similarity=0.361 Sum_probs=34.6
Q ss_pred hhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCc
Q 018270 87 SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV 134 (358)
Q Consensus 87 ~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~ 134 (358)
..+++.||+++|++++ .++ +..+|..+.+.+..-|.+..+...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~---~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK---YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cCc---EeecCCCCHHHHHHHHHHHHhccc
Confidence 3578899999999998 332 678999999999999988766543
No 455
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=70.35 E-value=65 Score=27.12 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc-CCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270 170 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248 (358)
Q Consensus 170 ~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~-~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 248 (358)
-|+.|+++.- .|..+ ...+.+-.||...-++..... .-...|. +.|.. .+..+.+.+..||.+.
T Consensus 20 dcpf~qr~~m---~L~~k---~~~f~vttVd~~~kp~~f~~~sp~~~~P~-l~~d~--------~~~tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFM---TLELK---GVPFKVTTVDLSRKPEWFLDISPGGKPPV-LKFDE--------KWVTDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHH---HHHHc---CCCceEEEeecCCCcHHHHhhCCCCCCCe-EEeCC--------ceeccHHHHHHHHHHh
Confidence 3666665544 33332 236778888888666555332 2233443 22321 1235678899999998
Q ss_pred cCCCCCCCCCccccccchhhHHHHHHHHHhcchhh-----HHHHHHHHHHHHhhh
Q 018270 249 CGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDE-----KKAVFSKIERGVEVL 298 (358)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~~ 298 (358)
+...+-........+.....+-.....|+..+.+. ...++++++.+-+.+
T Consensus 85 l~~p~~~~~~~~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL 139 (221)
T KOG1422|consen 85 LPPPKLPTLAPPESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYL 139 (221)
T ss_pred cCCCCCcccCCHHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHh
Confidence 88776655444444444445555556665333221 134555554443333
No 456
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=70.21 E-value=6.9 Score=25.42 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch--hhHhhcCccCCCeEEE
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK--SLCSKYGVQGYPTIQW 102 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~P~l~~ 102 (358)
..|+.++|+.|+...-.+....-. +....++..... ++-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357788999999887777655322 333344433322 2444566778898764
No 457
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=70.12 E-value=8.9 Score=25.62 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=32.2
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc----ccHHHHHhcCCCcccEEEE
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pti~~ 221 (358)
.+|+.++|++|+...-.+....-.| ....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~------~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV------PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc------eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4678899999999887766653333 33444432 2234555445557898754
No 458
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.88 E-value=17 Score=31.52 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=41.9
Q ss_pred HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270 36 EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 107 (358)
Q Consensus 36 ~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~ 107 (358)
+...+|+.+++.-+.|||.|-..+=.+-.+-..| +.+.+...-.+. .-.-...|++.|.....
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf---Gn~~l~~~~S~~------~d~~pn~Ptl~F~~~~~ 116 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRF---GNFSLEYHYSDP------YDNYPNTPTLIFNNYTP 116 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhc---CCeeeEEeecCc------ccCCCCCCeEEEecCcC
Confidence 4478899999999999999988766666555656 445332222221 11235889999886643
No 459
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=69.77 E-value=43 Score=24.85 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=74.1
Q ss_pred EEcChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhh----HhhcCcc-CCC
Q 018270 26 VVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL----CSKYGVQ-GYP 98 (358)
Q Consensus 26 ~~l~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~-~~P 98 (358)
..++.+++-+.= .-+...+|.|--+..+.-.+|.+.+.++|+.....++..|+=||-++-+-+ -+.|+|+ .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 345566655543 234567888888999999999999999999988778999999998876644 3456766 348
Q ss_pred eEEEccCCC--CCcccccC---CCCHHHHHHHHhc
Q 018270 99 TIQWFPKGS--LEPKKYEG---PRSTEALAEYVNN 128 (358)
Q Consensus 99 ~l~~~~~~~--~~~~~~~g---~~~~~~i~~~i~~ 128 (358)
+|=+.+-.. ..+.+-.+ ..+++++.+||..
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~Wied 118 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIED 118 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHh
Confidence 887775432 23333333 3678999999875
No 460
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=69.61 E-value=27 Score=23.67 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=46.9
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-hhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHH
Q 018270 46 EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 124 (358)
Q Consensus 46 ~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~ 124 (358)
.++.++|+.|++..-.+.... -.+.+..++..+. ..+.+...-..+|++. .+|. . ..+...|.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~------i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~-~------l~dS~~I~~ 65 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG------IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE-V------LTDSAAIIE 65 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT------EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE-E------EESHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcC------CeEEEeccCcccchhHHHhhcccccceEEE--ECCE-E------EeCHHHHHH
Confidence 367889999988776655332 1355556665543 5566666777999997 3332 1 235678999
Q ss_pred HHhccCCC
Q 018270 125 YVNNEGGT 132 (358)
Q Consensus 125 ~i~~~~~~ 132 (358)
++.+..+.
T Consensus 66 yL~~~~~~ 73 (75)
T PF13417_consen 66 YLEERYPG 73 (75)
T ss_dssp HHHHHSTS
T ss_pred HHHHHcCC
Confidence 99887653
No 461
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=69.42 E-value=4.5 Score=29.84 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----hhhHhhcCccCCCeEEEccCCCCCcc----cccCC
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFPKGSLEPK----KYEGP 116 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~l~~~~~~~~~~~----~~~g~ 116 (358)
..|+.++|+.|+.....+++. .+.+-.+|..++ .++.+-.+-.+.+.--+++..+.... .....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 568899999999998777642 244445555432 23333333334334444443321100 10234
Q ss_pred CCHHHHHHHHhcc
Q 018270 117 RSTEALAEYVNNE 129 (358)
Q Consensus 117 ~~~~~i~~~i~~~ 129 (358)
.+.+++.+++.+.
T Consensus 74 ls~~e~~~~l~~~ 86 (105)
T cd02977 74 LSDEEALELMAEH 86 (105)
T ss_pred CCHHHHHHHHHhC
Confidence 5677777777664
No 462
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=69.22 E-value=6.4 Score=26.39 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=29.0
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~ 220 (358)
.+++.++|++|....-.+....-. +....++........+.-+-..+|++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~------~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIP------VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCC------eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 367789999999887666655333 333344433333333333344578763
No 463
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=68.35 E-value=10 Score=32.34 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=40.7
Q ss_pred cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC--CceEEEEEeCccc
Q 018270 38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA--KSVLIGKVDCDEH 85 (358)
Q Consensus 38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~--~~v~~~~vd~~~~ 85 (358)
..+..++|.+-..+|..|..-...++.+..++... .+|.|..||-...
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 45688899999999999999999999999888754 4899999997644
No 464
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.23 E-value=2 Score=32.23 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=41.9
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcccEEEEEeCCCcceee--ec---C
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKFFPKGNKDGEE--YG---G 234 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~Pti~~~~~g~~~~~~--~~---g 234 (358)
..|+.++|+.|+.....+++- ++.+-.+|..+ ..++.+-.+..+.|.--+++..+..... .. .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999987666543 23344444432 2334443344444544455433321110 11 1
Q ss_pred CCCHHHHHHHHHHhcC
Q 018270 235 GRDLEDFVSFINEKCG 250 (358)
Q Consensus 235 ~~~~~~l~~~i~~~~~ 250 (358)
..+.+++.+.|.++-.
T Consensus 74 ~~s~~e~~~~l~~~p~ 89 (111)
T cd03036 74 SLSEEEALELLSSDGM 89 (111)
T ss_pred cCCHHHHHHHHHhCcC
Confidence 3466777777776543
No 465
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=66.78 E-value=7.9 Score=25.93 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=29.5
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270 46 EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 46 ~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~ 102 (358)
.++.++|++|+...-.+....-.+ ....++........+..+-..+|++..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~------~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV------EQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe------EEEECCCCchHHHHHhcCCCccCEEEe
Confidence 567789999998877776443322 233344333323334444567888753
No 466
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=65.90 E-value=34 Score=28.87 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=43.7
Q ss_pred CCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhc-CC-CC--eEEEEEeCc-ccHHHHHhcCC-CcccEEEEE
Q 018270 158 KSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFT-LE-DD--VVVANLDAD-KYKDLAEKYGV-SGFPTLKFF 222 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~-~~-~~--v~~~~vd~~-~~~~l~~~~~v-~~~Pti~~~ 222 (358)
.+++++|.|.-+.|+ -|......+..+-+... .. .+ +.++.+|-+ +.++..++|.. ...|.+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 788999999888887 47777777777777665 22 23 566666644 55778888887 444544333
No 467
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=65.45 E-value=57 Score=24.66 Aligned_cols=90 Identities=10% Similarity=0.157 Sum_probs=53.4
Q ss_pred hcCCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEE-eCccch-----------hhHhhcCcc--CCCeEE
Q 018270 37 VGQDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKV-DCDEHK-----------SLCSKYGVQ--GYPTIQ 101 (358)
Q Consensus 37 ~~~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~v-d~~~~~-----------~l~~~~~i~--~~P~l~ 101 (358)
...+++++ .|- ++..+.-+.....+.+....+.+ .++.+..+ +-.... .+.+.|++. ++-.++
T Consensus 7 ~w~~R~lv-v~aps~~d~~~~~q~~~L~~~~~~l~e-Rdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vL 84 (118)
T PF13778_consen 7 RWKNRLLV-VFAPSADDPRYQQQLEELQNNRCGLDE-RDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVL 84 (118)
T ss_pred cCcCceEE-EECCCCCCHHHHHHHHHHHhhhhcccc-CceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEE
Confidence 34444444 443 34455566667777765555554 34554444 333333 677888854 433444
Q ss_pred EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270 102 WFPKGSLEPKKYEGPRSTEALAEYVNNE 129 (358)
Q Consensus 102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 129 (358)
+=++|+ ...++....+.++|-..|+..
T Consensus 85 iGKDG~-vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 85 IGKDGG-VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EeCCCc-EEEecCCCCCHHHHHHHHhCC
Confidence 434554 447889999999999999864
No 468
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=64.75 E-value=12 Score=28.23 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=23.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 85 (358)
..|+.++|+.|++....+++ ..+.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA--------NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH--------cCCceEEEecCCC
Confidence 46789999999998887775 2345556666544
No 469
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.58 E-value=14 Score=30.55 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.5
Q ss_pred HHHHHhcCCCcccEEEEEeCCCcceeeecC--CCCHHHHHHHHHHhc
Q 018270 205 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINEKC 249 (358)
Q Consensus 205 ~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g--~~~~~~l~~~i~~~~ 249 (358)
..+++++|+.+|||+.+-.+|.- ...-.| -.+.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~-~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTM-YVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCce-EeccCCcccCCcHHHHHHHHHHH
Confidence 46889999999999999997743 222244 367788888887653
No 470
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=64.41 E-value=20 Score=29.26 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhcCC-CCe--EEEEEeCc-ccHHHHHhc
Q 018270 158 KSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDV--VVANLDAD-KYKDLAEKY 211 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~~~-~~v--~~~~vd~~-~~~~l~~~~ 211 (358)
.++.++|.|.-+.|+ .|......+.++.+.+..+ .++ .++.+|-+ +.++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 688999999888885 5887777777777766532 244 44444433 334444444
No 471
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=64.25 E-value=12 Score=25.13 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=32.3
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcccEEE
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLK 220 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~Pti~ 220 (358)
.+|+.++|+.|+...-.+.+..-. +....++... .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC------CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468889999999877666655333 3444555322 24555554556789885
No 472
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=64.20 E-value=13 Score=24.84 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=32.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc----cchhhHhhcCccCCCeEEE
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD----EHKSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~P~l~~ 102 (358)
..|+.++|++|+...-.+....-.+ ....++.. ...++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~------~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV------PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc------eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3577789999999888877553332 23334432 2244555556668899874
No 473
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=63.62 E-value=8.2 Score=25.86 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=39.7
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHH
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~ 242 (358)
.+|+.++|+.|....-.+++..-. +....++... .+++.+......+|++. .+| . . -.....+.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~-~--~----l~es~aI~ 66 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRD-L--V----LYESRIIM 66 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC-E--E----EEcHHHHH
Confidence 567889999999987666555433 3344455432 23444444455788663 222 1 1 13456677
Q ss_pred HHHHH
Q 018270 243 SFINE 247 (358)
Q Consensus 243 ~~i~~ 247 (358)
.|+.+
T Consensus 67 ~yL~~ 71 (73)
T cd03059 67 EYLDE 71 (73)
T ss_pred HHHHh
Confidence 77654
No 474
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=63.14 E-value=13 Score=28.13 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=41.3
Q ss_pred EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-------HHHHhcCCCcccEEEEEeCCCcceeee----
Q 018270 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKGNKDGEEY---- 232 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------~l~~~~~v~~~Pti~~~~~g~~~~~~~---- 232 (358)
..|+.++|+.|+.....+++- ++.+-.+|..+.+ .+.+..|. ..--+++..+......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~~ 70 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTSN 70 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCchh
Confidence 468899999999987666652 3444455554322 34444442 1112343332211111
Q ss_pred -cCCCCHHHHHHHHHHhcC
Q 018270 233 -GGGRDLEDFVSFINEKCG 250 (358)
Q Consensus 233 -~g~~~~~~l~~~i~~~~~ 250 (358)
....+.+++.++|.++-.
T Consensus 71 ~~~~ls~~e~~~~i~~~p~ 89 (117)
T TIGR01617 71 TFLDLSDKEALELLAEDPA 89 (117)
T ss_pred hcccCCHHHHHHHHHhCcc
Confidence 134677888888877543
No 475
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=61.82 E-value=7.9 Score=28.67 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=16.5
Q ss_pred EEEECCCChhhhhhhHHHHH
Q 018270 45 VEFYAPWCGHCKKLAPEYEK 64 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~ 64 (358)
..|+.++|+.|++....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999998877763
No 476
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=58.91 E-value=9.5 Score=28.52 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=41.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch----hhHhhcCccCCCeEEEccCCCCCcccc---c---
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYGVQGYPTIQWFPKGSLEPKKY---E--- 114 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~P~l~~~~~~~~~~~~~---~--- 114 (358)
..|+.++|+.|+.....+++ ..+.+-.+|..+++ ++..-.+..+.|..-+++..+.. ++- .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~-~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE--------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKS-YRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH--------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCch-HHhCCccccc
Confidence 46788999999998877764 23455556654432 33333344455655555544322 111 0
Q ss_pred CCCCHHHHHHHHhcc
Q 018270 115 GPRSTEALAEYVNNE 129 (358)
Q Consensus 115 g~~~~~~i~~~i~~~ 129 (358)
...+.+++.+.+.+.
T Consensus 73 ~~~s~~e~~~~l~~~ 87 (111)
T cd03036 73 PSLSEEEALELLSSD 87 (111)
T ss_pred ccCCHHHHHHHHHhC
Confidence 123556666666654
No 477
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=58.76 E-value=21 Score=29.79 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=29.9
Q ss_pred cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
++.+.++|+|+.+|++++.... ......|..+...-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~--~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ--GYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC--CCCEEEecccHHHHHHHHH
Confidence 5889999999999999997543 2334566666666665554
No 478
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=58.34 E-value=12 Score=29.05 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=15.9
Q ss_pred EEEEECCCChhhhhhhHHHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYE 63 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~ 63 (358)
+..|+.++|+.|+.....++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~ 21 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE 21 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH
Confidence 45688899999998776665
No 479
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.11 E-value=15 Score=24.50 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-hhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHH
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 123 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~ 123 (358)
..|+.++|+.|+...-.+....-. +....+|.... +++.+......+|++.. ++ .. ......|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~-~~------l~es~aI~ 66 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLVD--RD-LV------LYESRIIM 66 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CC-EE------EEcHHHHH
Confidence 467789999999887776544332 23334454332 34545555668897742 22 11 23456677
Q ss_pred HHHhc
Q 018270 124 EYVNN 128 (358)
Q Consensus 124 ~~i~~ 128 (358)
+|+.+
T Consensus 67 ~yL~~ 71 (73)
T cd03059 67 EYLDE 71 (73)
T ss_pred HHHHh
Confidence 77654
No 480
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=57.83 E-value=80 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=30.3
Q ss_pred HHHHhcCCCc-ccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270 206 DLAEKYGVSG-FPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 206 ~l~~~~~v~~-~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
.+.++|++.. .-++++...+|....++....+.++|...|.
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID 109 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTID 109 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHh
Confidence 7899999763 3455555544456777889999999998885
No 481
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.44 E-value=6.6 Score=29.11 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=15.5
Q ss_pred EEEcCCCCcccchhhhhHHH
Q 018270 164 VEFYAPWCGHCKNLAPTYEK 183 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~ 183 (358)
..|+.|+|+.|+.....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 57889999999997655543
No 482
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=57.19 E-value=41 Score=29.21 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=35.5
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC-CcccEEEEEeC
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV-SGFPTLKFFPK 224 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pti~~~~~ 224 (358)
..+++.++...+.||+.|...+=.+-.+-..| +++ -..-+.++. .+. ...|++.|...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf---Gn~-~l~~~~S~~------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF---GNF-SLEYHYSDP------YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc---CCe-eeEEeecCc------ccCCCCCCeEEEecC
Confidence 57899999999999999998643333333334 455 222222211 222 35899888754
No 483
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.49 E-value=25 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=16.7
Q ss_pred EEEcCCCCcccchhhhhHHHH
Q 018270 164 VEFYAPWCGHCKNLAPTYEKV 184 (358)
Q Consensus 164 v~f~a~~C~~c~~~~~~~~~l 184 (358)
++|++..||.|......++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 789999999998776666655
No 484
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=53.63 E-value=18 Score=24.24 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=32.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----chhhHhhcCccCCCeEE
Q 018270 45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQ 101 (358)
Q Consensus 45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~ 101 (358)
..|+.++|++|+...-.+....-. +....+|..+ ..++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC------CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 467889999999777666654332 3344455322 24555555566889986
No 485
>PRK12559 transcriptional regulator Spx; Provisional
Probab=53.26 E-value=9.1 Score=29.67 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=42.1
Q ss_pred EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCCCcceeee---cCCCC
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEY---GGGRD 237 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~---~g~~~ 237 (358)
+..|+.|+|+.|+.....+++-.- .+.+..+.-+ ...++..-+...+.|.--+++..+...... ....+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi------~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls 75 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQI------DYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEELS 75 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC------CeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCcccCC
Confidence 467889999999997655554321 2333333222 233444444333344334454433311111 12356
Q ss_pred HHHHHHHHHHhcCC
Q 018270 238 LEDFVSFINEKCGT 251 (358)
Q Consensus 238 ~~~l~~~i~~~~~~ 251 (358)
.+++++.|.++-..
T Consensus 76 ~~e~i~ll~~~P~L 89 (131)
T PRK12559 76 LNEFYKLIIEHPLM 89 (131)
T ss_pred HHHHHHHHHhCcce
Confidence 67788888765443
No 486
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.51 E-value=19 Score=29.86 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=27.9
Q ss_pred cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245 (358)
Q Consensus 204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 245 (358)
+...+.+.||.++||+++ +|+ ....|..+.+.+.+-|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~---~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK---YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe---EeecCCCCHHHHHHHh
Confidence 456778899999999888 332 3468889988887654
No 487
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=50.19 E-value=19 Score=27.00 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=16.8
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYEK 64 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~~ 64 (358)
+..|+.++|+.|++....+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 346778999999998887774
No 488
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=37 Score=29.19 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=23.6
Q ss_pred CcEEEEEECCCChhhhhhhHHHHHHHHHh
Q 018270 41 RGALVEFYAPWCGHCKKLAPEYEKLGASF 69 (358)
Q Consensus 41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~ 69 (358)
+..++.|+...||+|++..|.+.+.....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 56899999999999988888888754443
No 489
>PRK12559 transcriptional regulator Spx; Provisional
Probab=49.84 E-value=19 Score=27.82 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=15.9
Q ss_pred EEEEECCCChhhhhhhHHHH
Q 018270 44 LVEFYAPWCGHCKKLAPEYE 63 (358)
Q Consensus 44 lv~fya~~c~~C~~~~~~~~ 63 (358)
+..|+.++|+.|+.....++
T Consensus 2 i~iY~~~~C~~crkA~~~L~ 21 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE 21 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH
Confidence 45788899999998776655
No 490
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=48.89 E-value=25 Score=28.78 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=29.9
Q ss_pred cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246 (358)
Q Consensus 204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 246 (358)
+...+.++||.++|++++ +| + ..+.|....+.|.+.|+
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g-~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NG-K--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TT-T--EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHcCCcccCEEEE--CC-E--EEEECCCCHHHHHHHhC
Confidence 446788999999999999 44 2 67789999988887763
No 491
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=48.80 E-value=6.6 Score=27.62 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=42.0
Q ss_pred EcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270 166 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 166 f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 221 (358)
|-+...+........+..+.+... ...+.+--||..+++.+++.++|-..||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL-GGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC-TTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhC-CCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 444444555666667777777653 4678999999999999999999999998763
No 492
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=48.72 E-value=34 Score=24.13 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-HHHHHhcCCCcccEEEE
Q 018270 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKF 221 (358)
Q Consensus 162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pti~~ 221 (358)
.+.+|+.+.|+.|....-.+....- .+....++.... ..+.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3566778889999987665555432 344555554433 33555445667898753
No 493
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=47.94 E-value=14 Score=28.61 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=16.8
Q ss_pred EEEEcCCCCcccchhhhhHHHH
Q 018270 163 LVEFYAPWCGHCKNLAPTYEKV 184 (358)
Q Consensus 163 ~v~f~a~~C~~c~~~~~~~~~l 184 (358)
+..|+.|+|+.|+.....+++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999976555543
No 494
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=47.84 E-value=43 Score=23.60 Aligned_cols=54 Identities=6% Similarity=0.081 Sum_probs=33.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-hhhHhhcCccCCCeEEE
Q 018270 43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQW 102 (358)
Q Consensus 43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~ 102 (358)
.+..|+.+.|++|+...-.+....- .+.+..++.... .++.+......+|.+..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3555678889999987666654332 234445554433 33555556678899874
No 495
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=47.83 E-value=1e+02 Score=22.15 Aligned_cols=71 Identities=23% Similarity=0.190 Sum_probs=37.9
Q ss_pred cCCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270 157 DKSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235 (358)
Q Consensus 157 ~~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~ 235 (358)
+.++ .++..|-..- ......|+++|..++.+-++-++--+... ...-.+-|.+++-+++......|.|.
T Consensus 14 d~~kr~iIgYF~~~~----~~eY~~f~kvA~~lr~dC~F~v~~G~~~~------~~~~~~~~~i~frp~~~~~~~~y~G~ 83 (91)
T cd03070 14 DRSKRNIIGYFESKD----SDEYDNFRKVANILRDDCSFLVGFGDVTK------PERPPGDNIIYFPPGHNAPDMVYLGS 83 (91)
T ss_pred CcCCceEEEEEcCCC----ChhHHHHHHHHHHHhhcCeEEEEeccccc------cccCCCCCeEEECCCCCCCceEEccC
Confidence 3444 4555554322 23455889999999865555444423221 11233455555444434455788887
Q ss_pred CC
Q 018270 236 RD 237 (358)
Q Consensus 236 ~~ 237 (358)
.+
T Consensus 84 ~t 85 (91)
T cd03070 84 LT 85 (91)
T ss_pred CC
Confidence 63
No 496
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=47.73 E-value=28 Score=25.89 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=36.8
Q ss_pred EcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--ccEEEEE-eCC
Q 018270 166 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFF-PKG 225 (358)
Q Consensus 166 f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~Pti~~~-~~g 225 (358)
||..+|+-|......+... ...+.+.++.+......++...++++. ..+.++. .+|
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 60 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG 60 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC
Confidence 7889999999988777666 223467777665455555667788763 4444443 444
No 497
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.56 E-value=26 Score=28.98 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=27.4
Q ss_pred hhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270 86 KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126 (358)
Q Consensus 86 ~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i 126 (358)
...+.+.||.++|++++ +|+ ....|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~---~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGK---YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCe---EeecCCCCHHHHHHHh
Confidence 45677889999999998 332 3467888888887765
No 498
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=44.25 E-value=1.6e+02 Score=25.69 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcCCCCe----EEEEEeCc
Q 018270 158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDV----VVANLDAD 202 (358)
Q Consensus 158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~~~~v----~~~~vd~~ 202 (358)
.++-+++.|--+.||. |.+....+..+-........+ +|+.+|-+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 4677899999898874 666554444444444333222 67777764
No 499
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=41.78 E-value=41 Score=28.80 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=38.5
Q ss_pred cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC--CCeEEEEEeCc
Q 018270 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE--DDVVVANLDAD 202 (358)
Q Consensus 157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~--~~v~~~~vd~~ 202 (358)
..+..++|.+-..+|..|..-...++.|..++..+ .++.|..|+-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 46788899999999999999999999998887654 37889888855
No 500
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=41.52 E-value=46 Score=24.64 Aligned_cols=53 Identities=13% Similarity=0.331 Sum_probs=34.6
Q ss_pred EECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--CCCeEEEc
Q 018270 47 FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWF 103 (358)
Q Consensus 47 fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~P~l~~~ 103 (358)
||-.+|+.|......+.... ..+.+.+..+....+.++...++++ ...+.+.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 56 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD----RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL 56 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC----CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE
Confidence 68889999999888887662 2256777766545555555666654 34444443
Done!