Query 018271
Match_columns 358
No_of_seqs 326 out of 2796
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 4.8E-18 1.7E-22 161.7 24.1 185 137-338 245-435 (451)
2 3o7q_A L-fucose-proton symport 99.7 1.1E-15 3.7E-20 144.9 24.6 174 136-329 250-425 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 8.7E-16 3E-20 148.0 22.1 175 144-337 13-197 (491)
4 4gc0_A D-xylose-proton symport 99.7 7.2E-17 2.5E-21 155.5 14.1 185 152-349 285-475 (491)
5 1pw4_A Glycerol-3-phosphate tr 99.7 5.4E-16 1.8E-20 147.5 15.9 178 143-339 27-209 (451)
6 3o7q_A L-fucose-proton symport 99.7 3.7E-15 1.3E-19 141.2 18.0 182 146-334 28-227 (438)
7 2cfq_A Lactose permease; trans 99.6 1.9E-15 6.6E-20 143.0 14.4 183 137-338 213-401 (417)
8 2gfp_A EMRD, multidrug resista 99.6 1.3E-15 4.3E-20 141.7 7.9 167 148-333 4-171 (375)
9 4aps_A DI-OR tripeptide H+ sym 99.6 5.4E-14 1.8E-18 135.4 19.5 184 144-342 283-477 (491)
10 2xut_A Proton/peptide symporte 99.6 1.9E-14 6.4E-19 139.9 14.5 171 144-333 12-195 (524)
11 2gfp_A EMRD, multidrug resista 99.5 7.8E-14 2.7E-18 129.6 8.5 165 137-323 192-363 (375)
12 4gc0_A D-xylose-proton symport 99.4 8.4E-12 2.9E-16 120.0 15.3 156 164-330 32-214 (491)
13 2cfq_A Lactose permease; trans 99.2 1.2E-11 4.1E-16 116.9 4.5 170 140-329 3-180 (417)
14 2xut_A Proton/peptide symporte 99.1 4.4E-10 1.5E-14 109.0 10.8 163 167-342 322-508 (524)
15 2knc_B Integrin beta-3; transm 59.6 38 0.0013 23.0 7.2 21 315-335 11-31 (79)
16 2knc_A Integrin alpha-IIB; tra 22.7 1.5E+02 0.005 18.5 5.1 21 44-64 10-30 (54)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.81 E-value=4.8e-18 Score=161.68 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=148.7
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|.+.+..++.....+.+..++|.+.++ +|++..+++++.+...++..+++++.|+++||+.+ +|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~----~~~ 320 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR----GNR 320 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----TCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCc
Confidence 4677889999999988888888888889999999987 69999999999999999999999999999999811 223
Q ss_pred HHHHHHHHHHH-HHHHHHHh-c--CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh-HHHHHh
Q 018271 216 SFIAITLATMS-VGHIVVAS-G--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYVCS 290 (358)
Q Consensus 216 ~~~~~~~~~~~-~~~~l~~~-~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i-g~~i~g 290 (358)
..+.++..+.. ++.+++.. . +...+.+..++.|++.+...+....++.|.+|++.||+++|+.+....+ |.. ++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~-~~ 399 (451)
T 1pw4_A 321 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV-AA 399 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-HH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH-HH
Confidence 33444444333 44444442 2 3444566677888888887888889999999999999999999999999 984 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|.+.|.+.|..| |+..|++.+++.+++.++.+++.+
T Consensus 400 ~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 400 SAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 999999999988888766655443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.72 E-value=1.1e-15 Score=144.91 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=140.6
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHH-HHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQI-GESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
+.++.++++.+|...+..++.......+..++|.+ .++. |++..+++.+.+...++..+++++.|+++||+ +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~------~ 323 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF------A 323 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 46778899999999888888888888888999999 8876 99999999999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 214 RPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
|+..+..+.++.+++.+++...+.....+..++.|++.+..++...++..|.+|++ ++++.++.. .+.+|+. ++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~-~~~~~ 400 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG-IVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH-HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH-HHHHH
Confidence 66777777777777666655333333445557888888888888889989999966 888888877 5668884 89999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 329 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~ 329 (358)
.|.+.|..|+ |+..|++.+++.++.
T Consensus 401 ~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 401 MGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred HHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 9999999886 778887765544443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=8.7e-16 Score=148.04 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHh------cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHH-HhhhcCCchHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGES------LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPS 216 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr-~~~k~~~gr~~ 216 (358)
+.+|.+++..++.....+.+..+++.+.++ +|++..+.+++.+...++..++.++.|+++|| + |||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~------g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII------GARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cchH
Confidence 456777777777777788888888887765 89999999999999999999999999999999 8 7778
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcc--hHHHHHHHHHHhhhHHHHHhHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~--~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
.+..+.++.+++.+++. .++.+.+++.+++.|++.+...+...++++|.+|+++ |++++++.+.+..+|. +++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 88888888888888777 5677788889999999999999999999999999988 7888888999999999 489999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
+|.+.+..+ |++.|++.++..+++.++.++..
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887 99999998887777766554443
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.71 E-value=7.2e-17 Score=155.55 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=127.4
Q ss_pred HHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHH
Q 018271 152 AMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV 231 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l 231 (358)
..+......+.+..+.+.+.+..+.+............+...++.++.+++.||+ |||..+..+....+++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~------Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 285 SIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh------cCcchhccchHHHHHHHHH
Confidence 3334444455667778888888888888877778888899999999999999999 6666666666666655554
Q ss_pred HH---h-cCchh-HHHHHHHHHhhhh-cccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 232 VA---S-GFPGN-LYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 232 ~~---~-~~~~~-l~~~~~l~g~~~g-~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
+. . ..... ..+..++...+.+ +..++.+.+.+|+||++.|+++.|+.+..+.++++ +++.+.+.+.+....
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~-- 435 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWL-- 435 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHH--
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--
Confidence 43 1 22222 2222222222222 33456778999999999999999999999999985 677777665443210
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVL 349 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (358)
....++...|++.+++++++++..+++.+|||++..++.+
T Consensus 436 ----~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 436 ----VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred ----HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 0000145678888999999988888888999887665543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.68 E-value=5.4e-16 Score=147.49 Aligned_cols=178 Identities=15% Similarity=0.081 Sum_probs=149.0
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
.+.++.+++..++.......+...+|.+.+++ .+..+.+++.+...++..++.+++|+++||+ |||+.+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc------CchHHHHHHH
Confidence 34556666666666666666777889999999 9999999999999999999999999999999 7777888888
Q ss_pred HHHHHHHHHHHh-----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 223 ATMSVGHIVVAS-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 223 ~~~~~~~~l~~~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
++.+++.+++.. .+.+.+++.+++.|++.+...+...++++|.+|+++|++++|+.+.+..+|. +++|.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888887776643 4567788889999999999999999999999999999999999999999999 4899999998
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
.+..++ |++.|++.+++.++..++.++..++
T Consensus 179 ~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 179 MAWFND-----------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTCC-----------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 887764 9999999988887776665555443
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.65 E-value=3.7e-15 Score=141.21 Aligned_cols=182 Identities=12% Similarity=0.056 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
++.+.+.+++...........+|.+.+++|.+..+.+++.+...++..++.+++|+++||+ |||+.+.++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchHHHHHHHHHH
Confidence 3444445555555555667778899999999999999999999999999999999999999 7778888888888
Q ss_pred HHHHHHH---H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 226 SVGHIVV---A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 226 ~~~~~l~---~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
+++.++. . .++.+.+++.+++.|++.+...+...++++|.+|+++|+.+.|+.+.+..+|.. ++|.+++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHHTS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 8888776 5 467778888999999999999999999999999999999999999999999994 8999999988333
Q ss_pred cCCCCC--------------ccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 302 ASGEGN--------------SCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 302 g~~~~~--------------~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
....+. ......+|++.|++.+++.++..++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 210000 000001178888877776666654443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.64 E-value=1.9e-15 Score=143.05 Aligned_cols=183 Identities=12% Similarity=0.070 Sum_probs=133.9
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-C---CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-G---YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G---~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
.++.++++++|.+++..++.......+..++|.+.++. + .+....+...++..++..++.++.|+++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------ 286 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------ 286 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 45678889888777665555545555666788777653 3 2234456677777888899999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH-HHHhhhHHHHHh
Q 018271 213 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCS 290 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~-~~~~~ig~~i~g 290 (358)
+||+.+..+..+.++..+++. ..+...+++..++.+++.+........+++|.+|++.||+++|+. +....+|+. ++
T Consensus 287 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~g 365 (417)
T 2cfq_A 287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FM 365 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-Hh
Confidence 666667666666666655554 334444555555666666555566678999999999999999995 888889984 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|.+.|.+.|..| |...|.+.++++++++++.+++.+
T Consensus 366 p~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 366 SVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp THHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999877 889999988888887766544333
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.59 E-value=1.3e-15 Score=141.72 Aligned_cols=167 Identities=13% Similarity=0.156 Sum_probs=139.0
Q ss_pred HHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHH
Q 018271 148 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~ 227 (358)
.+++..++.......+...+|.+.+++|.+..+.+++.+...++..++.++.|+++||+| ||+.+..+..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchhHHHHHHHHHH
Confidence 345555555556666777888888999999999999999999999999999999999995 44446667677777
Q ss_pred HHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCC
Q 018271 228 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 306 (358)
Q Consensus 228 ~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~ 306 (358)
+.++.. .++.+.+++.+++.|++.+...+...+++.|.+|+++|++.+++.+.+..+|. +++|.+++++.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc----
Confidence 666665 45667788889999999998899999999999999999999999999999999 489999999988777
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHH
Q 018271 307 NSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 307 ~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
|+..|++.+++.++..+..
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHCCC
T ss_pred --------HHHHHHHHHHHHHHHHHHH
Confidence 9999998888777666533
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.59 E-value=5.4e-14 Score=135.44 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
...+.+++..++..........++|.+.++ .+.+....+.+.+...++..++.++.|+++||++||+. .+...+..+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHH
Confidence 344555555555555556667778888776 47766677888888899999999999999999977653 2233344555
Q ss_pred HHHHHHHHHHHh----------cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 223 ATMSVGHIVVAS----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 223 ~~~~~~~~l~~~----------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.+.+++.+++.. .+...+.+..++.|++.+...+..+.++.|.+|++.||++.|+.+....+|.. ++|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~~ 440 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNAQ 440 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 555555544331 13445666778888888888888899999999999999999999999999995 7898
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
+.|.+.+. + +...|++.+++++++.++.+++.++.++
T Consensus 441 ~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 441 LVTLYNAK-S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HGGGGGGS-S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHhcc-c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887664 3 6678888888888777666555544443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.57 E-value=1.9e-14 Score=139.91 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcC------CCchhhHHHHHHHHHHHHHhhhHhHHHHHHH-hhhcCCchH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLG------YPTSAINSLVSLWSIWNFLGRFGGGYVSDIV-LHRMGWERP 215 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G------~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~-~~k~~~gr~ 215 (358)
+.+|.+++..++.....+....+++.+++ ++| ++..+++++.+.+.++..++.++.|+++||+ | ||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------KY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------SH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ch
Confidence 45677777777777777888888887765 578 9999999999999999999999999999998 5 34
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHH---HHHHhhhHHHHHh
Q 018271 216 SFIAITLATMSVGHIVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT---IAIASPVGSYVCS 290 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~---~~~~~~ig~~i~g 290 (358)
+.+.++.++.+++.+++. .. +.+.+++.+++.|++.+...+...++++|.+|+++|++..+. .+.+..+|.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 556667777777776666 45 667788889999999999999999999999999999766555 8888999984 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
|.++|.+.+..+ |++.|++.+++.+++.++.
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHH
Confidence 999999998777 9999999888777665543
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.46 E-value=7.8e-14 Score=129.58 Aligned_cols=165 Identities=14% Similarity=0.063 Sum_probs=126.8
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|...+..++.......+..++|.+.++ +|++..+++.+.+...++..+++++.++++||+ +++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~------~~~ 265 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF------STL 265 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH------HHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 3566788899988888888877778888888888776 799999999999999999999999999999998 442
Q ss_pred HHHHHHHHH-HHHHHH--HHHh---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 216 SFIAITLAT-MSVGHI--VVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 216 ~~~~~~~~~-~~~~~~--l~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
.. .+... ...+.. .... .+.+.+++..++.|++.+..++....+..|.+| ++||++.|+.+....+|+. +
T Consensus 266 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~ 341 (375)
T 2gfp_A 266 MW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-V 341 (375)
T ss_dssp HH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-C
T ss_pred HH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-H
Confidence 22 22222 111111 1111 233445566778889988888999999999998 8999999999999999995 8
Q ss_pred hHHHHHHHHhhccCCCCCccccccchHHHHHHHH
Q 018271 290 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMA 323 (358)
Q Consensus 290 gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~ 323 (358)
+|.+.|.+.+..+ |...+++.+
T Consensus 342 ~~~~~g~l~~~~~------------~~~~~~~~~ 363 (375)
T 2gfp_A 342 LASLSAMLPQTGQ------------GSLGLLMTL 363 (375)
T ss_dssp CSTTCTHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCc------------ccHHHHHHH
Confidence 9999999988766 777776543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.36 E-value=8.4e-12 Score=119.96 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=115.7
Q ss_pred HhcHHHHHHhcCC----C----chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH--
Q 018271 164 VNNISQIGESLGY----P----TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-- 233 (358)
Q Consensus 164 ~~~l~~~~~~~G~----s----~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-- 233 (358)
...+|.+.++++. + ....+++++.+.++..+|.+++|+++||+ |||+.+.++.+++.++.++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~------GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655432 2 23456788889999999999999999999 888889888888888877665
Q ss_pred -----------------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 234 -----------------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 234 -----------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
.++...+++.+++.|++.|+..+..+.+++|..|++.|+...++.+.+..+|.. .++.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~ 184 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYF 184 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchh
Confidence 234566889999999999999999999999999999999999999999998884 66655555
Q ss_pred HHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 297 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 297 l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
+....+. ...+...|+..+.+.....++..
T Consensus 185 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 185 IARSGDA----SWLNTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp HHTTSCT----TTTTTTHHHHHHHTTHHHHHHHH
T ss_pred hcccccc----ccccchhhHHHhhhhhhhhhhhh
Confidence 5443321 11123346666665555444443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.17 E-value=1.2e-11 Score=116.86 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=111.2
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.+|++.+|.+....++...........+|.++++ +|++..+.+++.+...++..++++++|+++||+| ||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G------rr~~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG------LRKYL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST------TCCHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHHH
Confidence 5788999988887777766666777889988875 7999999999999999999999999999999995 44445
Q ss_pred HHHHHHHHHH---HHHHH-hcCc-hhHHHHHHHHHhhhhcccccHHHHHHHhhCC--cchHHHHHHHHHHhhhHHHHHhH
Q 018271 219 AITLATMSVG---HIVVA-SGFP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 219 ~~~~~~~~~~---~~l~~-~~~~-~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~--~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.++..+..+. ..... .... .......++.+++.+..++.......+..+. ++++..+|.....+.+|.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 5444433321 11111 0000 0112233333443333332222333333322 3557778888888888884 799
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 329 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~ 329 (358)
.++|++.+. + |+..|++.++..++.
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence 999999873 4 888888766654433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.07 E-value=4.4e-10 Score=108.95 Aligned_cols=163 Identities=11% Similarity=-0.011 Sum_probs=97.3
Q ss_pred HHHHHHhcCCCc-hhhHHHHHHHHHHHHHhhhHhHHHH----HHHhhhcCCchHHHHHHHHHHHHHHHHHHHh-------
Q 018271 167 ISQIGESLGYPT-SAINSLVSLWSIWNFLGRFGGGYVS----DIVLHRMGWERPSFIAITLATMSVGHIVVAS------- 234 (358)
Q Consensus 167 l~~~~~~~G~s~-~~a~~~~~~~~i~~~~g~~~~G~ls----Dr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~------- 234 (358)
++.+..+.+.+. ...+.+.+...++..++.++.+++. ||.++|. +++..+.++.++.+++.+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (524)
T 2xut_A 322 WILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVVGTIQLMMDG 399 (524)
T ss_dssp HHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT
T ss_pred hHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444443322 1345555555555666666666653 3332221 2234455566666666555442
Q ss_pred ---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccc
Q 018271 235 ---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 311 (358)
Q Consensus 235 ---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g 311 (358)
.+...+.+..++.|++.+...+....++.|.+|++.||+++|+.+....+|+. ++|.+.|.+.+..+.
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~~~~~~~~-------- 470 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL-WVLLANVSVKSPTVT-------- 470 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH-HHHHHHHHTTSCHHH--------
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH-HHHHHHHHhcccccc--------
Confidence 13344566778888888888888888999999999999999999999999995 899999998874310
Q ss_pred ccch---------HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 312 THCF---------MLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 312 ~~~~---------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
+| +..|++.++++++++++.+++.++.++
T Consensus 471 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 471 --EQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp --HHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred --cccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 02 334777777777777665555444433
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.57 E-value=38 Score=23.01 Aligned_cols=21 Identities=10% Similarity=0.426 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 018271 315 FMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 315 ~~~~f~~~~~~~~~~~~~~~~ 335 (358)
+..+..+.+++.++++++.++
T Consensus 11 ~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 333444555555555544433
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.69 E-value=1.5e+02 Score=18.48 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHHhhhh
Q 018271 44 FPLWARIITFLFLLFLLSSPL 64 (358)
Q Consensus 44 ~~~~~~~~~~~~~~~ll~~~~ 64 (358)
...|..+...++.++++.+-.
T Consensus 10 vp~wiIi~svl~GLllL~li~ 30 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILV 30 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 345666555544444444333
Done!