Query 018272
Match_columns 358
No_of_seqs 300 out of 1515
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 8.8E-74 1.9E-78 576.8 22.2 249 21-278 258-526 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 2.3E-68 4.9E-73 503.6 21.5 217 30-264 19-249 (254)
3 PF07002 Copine: Copine; Inte 100.0 2.1E-49 4.6E-54 346.2 15.1 137 73-214 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 5.9E-28 1.3E-32 219.7 18.7 174 83-275 20-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 1.1E-19 2.5E-24 165.6 14.1 169 50-248 4-188 (199)
6 KOG4172 Predicted E3 ubiquitin 99.0 2.4E-11 5.2E-16 87.8 -2.6 47 312-358 8-61 (62)
7 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.4E-10 3.1E-15 83.2 0.5 43 311-353 2-50 (50)
8 KOG4275 Predicted E3 ubiquitin 98.9 2.3E-10 4.9E-15 108.5 -1.7 48 311-358 300-349 (350)
9 KOG0823 Predicted E3 ubiquitin 98.7 6.3E-09 1.4E-13 96.3 1.8 49 309-357 45-103 (230)
10 smart00327 VWA von Willebrand 98.6 3.5E-07 7.6E-12 79.4 11.8 148 49-229 2-159 (177)
11 KOG4265 Predicted E3 ubiquitin 98.6 1.2E-08 2.7E-13 99.6 1.1 49 309-357 288-342 (349)
12 cd01461 vWA_interalpha_trypsin 98.6 1.4E-06 3E-11 76.1 13.4 147 49-227 3-151 (171)
13 KOG0317 Predicted E3 ubiquitin 98.6 2E-08 4.3E-13 95.6 1.6 45 309-353 237-286 (293)
14 PLN03208 E3 ubiquitin-protein 98.5 3.3E-08 7.1E-13 89.9 2.5 44 309-352 16-80 (193)
15 KOG1571 Predicted E3 ubiquitin 98.5 3.8E-08 8.2E-13 96.3 0.4 48 311-358 305-354 (355)
16 cd00198 vWFA Von Willebrand fa 98.4 7.9E-06 1.7E-10 68.7 13.6 146 50-227 2-154 (161)
17 cd01463 vWA_VGCC_like VWA Volt 98.4 4E-06 8.6E-11 75.7 12.4 149 47-226 12-177 (190)
18 PHA02929 N1R/p28-like protein; 98.4 1.3E-07 2.9E-12 89.0 2.6 47 309-355 172-231 (238)
19 KOG0320 Predicted E3 ubiquitin 98.4 1.4E-07 3E-12 84.2 2.3 47 311-357 131-186 (187)
20 cd01471 vWA_micronemal_protein 98.4 6.4E-06 1.4E-10 73.7 12.5 151 86-245 19-179 (186)
21 cd01464 vWA_subfamily VWA subf 98.3 5.6E-06 1.2E-10 73.7 10.7 144 48-227 3-160 (176)
22 cd01465 vWA_subgroup VWA subgr 98.3 2.6E-05 5.7E-10 68.0 13.7 146 49-225 1-150 (170)
23 cd01450 vWFA_subfamily_ECM Von 98.2 1.3E-05 2.7E-10 68.7 11.1 145 50-227 2-154 (161)
24 PF13923 zf-C3HC4_2: Zinc fing 98.2 2.8E-07 6.1E-12 62.7 0.3 33 314-346 1-39 (39)
25 PF15227 zf-C3HC4_4: zinc fing 98.2 4.3E-07 9.2E-12 63.1 0.8 33 314-346 1-42 (42)
26 PHA02926 zinc finger-like prot 98.2 5E-07 1.1E-11 83.5 0.9 46 309-354 168-233 (242)
27 cd01466 vWA_C3HC4_type VWA C3H 98.2 2.4E-05 5.3E-10 68.4 11.3 141 49-226 1-145 (155)
28 KOG2164 Predicted E3 ubiquitin 98.1 7.6E-07 1.6E-11 90.6 1.6 42 311-352 186-237 (513)
29 TIGR00599 rad18 DNA repair pro 98.1 1.2E-06 2.6E-11 88.2 2.5 50 303-352 18-72 (397)
30 PF14634 zf-RING_5: zinc-RING 98.1 1.6E-06 3.5E-11 60.5 2.0 36 313-348 1-44 (44)
31 cd01454 vWA_norD_type norD typ 98.0 6.1E-05 1.3E-09 66.8 11.6 125 87-218 23-155 (174)
32 cd01456 vWA_ywmD_type VWA ywmD 98.0 5.3E-05 1.1E-09 69.2 11.1 161 48-225 20-189 (206)
33 PF13639 zf-RING_2: Ring finge 98.0 1E-06 2.2E-11 61.3 -0.5 35 313-347 2-44 (44)
34 smart00504 Ubox Modified RING 98.0 3.9E-06 8.4E-11 62.3 2.5 41 312-352 2-47 (63)
35 cd01482 vWA_collagen_alphaI-XI 98.0 0.00015 3.3E-09 63.7 12.8 125 87-227 22-152 (164)
36 KOG1785 Tyrosine kinase negati 98.0 1.7E-06 3.8E-11 85.5 0.3 42 312-353 370-418 (563)
37 cd00162 RING RING-finger (Real 98.0 3.8E-06 8.2E-11 57.0 1.8 38 313-350 1-45 (45)
38 KOG0287 Postreplication repair 97.9 1.4E-06 3.1E-11 84.6 -0.8 51 302-352 14-69 (442)
39 PF13519 VWA_2: von Willebrand 97.9 0.00012 2.7E-09 63.0 11.3 146 50-225 1-148 (172)
40 cd01467 vWA_BatA_type VWA BatA 97.9 0.00031 6.7E-09 62.1 13.5 141 48-215 2-142 (180)
41 KOG0978 E3 ubiquitin ligase in 97.9 2.9E-06 6.3E-11 90.0 -0.1 46 307-352 639-690 (698)
42 PF00097 zf-C3HC4: Zinc finger 97.9 4E-06 8.6E-11 57.2 0.6 33 314-346 1-41 (41)
43 KOG1100 Predicted E3 ubiquitin 97.9 7.1E-06 1.5E-10 76.0 2.3 46 312-357 159-206 (207)
44 TIGR03788 marine_srt_targ mari 97.8 0.00023 4.9E-09 75.6 13.8 129 85-226 288-419 (596)
45 cd01476 VWA_integrin_invertebr 97.8 0.00052 1.1E-08 59.8 13.4 143 49-225 1-154 (163)
46 COG5432 RAD18 RING-finger-cont 97.8 5.1E-06 1.1E-10 79.3 0.7 52 301-352 15-71 (391)
47 KOG2177 Predicted E3 ubiquitin 97.8 4.7E-06 1E-10 77.4 0.3 43 306-348 8-55 (386)
48 COG5574 PEX10 RING-finger-cont 97.8 6.8E-06 1.5E-10 77.6 1.1 44 309-352 213-263 (271)
49 cd01470 vWA_complement_factors 97.8 0.00038 8.2E-09 63.1 12.2 155 49-226 1-176 (198)
50 cd01472 vWA_collagen von Wille 97.7 0.00043 9.4E-09 60.6 11.5 121 89-226 24-151 (164)
51 cd01473 vWA_CTRP CTRP for CS 97.7 0.001 2.2E-08 60.6 14.2 150 89-245 22-180 (192)
52 PF13768 VWA_3: von Willebrand 97.7 0.00035 7.6E-09 60.5 10.5 142 50-225 2-146 (155)
53 PF00092 VWA: von Willebrand f 97.7 0.00052 1.1E-08 59.7 11.7 148 50-226 1-154 (178)
54 smart00184 RING Ring finger. E 97.7 2.9E-05 6.3E-10 50.7 2.3 33 314-346 1-39 (39)
55 PF14835 zf-RING_6: zf-RING of 97.7 2.1E-05 4.6E-10 59.3 1.6 45 308-352 4-52 (65)
56 cd01474 vWA_ATR ATR (Anthrax T 97.6 0.00066 1.4E-08 60.9 11.5 147 48-227 4-156 (185)
57 PF13445 zf-RING_UBOX: RING-ty 97.6 1.9E-05 4.1E-10 55.2 0.3 26 314-340 1-31 (43)
58 PTZ00441 sporozoite surface pr 97.5 0.0017 3.7E-08 68.2 13.2 150 47-224 41-198 (576)
59 cd01462 VWA_YIEM_type VWA YIEM 97.5 0.0036 7.7E-08 54.0 13.3 133 50-216 2-135 (152)
60 cd01453 vWA_transcription_fact 97.4 0.0016 3.5E-08 58.9 11.3 145 49-224 4-154 (183)
61 cd01475 vWA_Matrilin VWA_Matri 97.4 0.0021 4.6E-08 59.6 12.4 142 49-226 3-156 (224)
62 KOG4692 Predicted E3 ubiquitin 97.4 5.6E-05 1.2E-09 74.1 0.7 45 309-353 420-469 (489)
63 cd01480 vWA_collagen_alpha_1-V 97.3 0.0048 1E-07 55.5 13.2 112 104-227 48-162 (186)
64 cd01460 vWA_midasin VWA_Midasi 97.3 0.0033 7.2E-08 60.5 12.4 139 48-216 60-205 (266)
65 cd01477 vWA_F09G8-8_type VWA F 97.3 0.0039 8.5E-08 57.0 12.0 148 48-225 19-182 (193)
66 cd01469 vWA_integrins_alpha_su 97.2 0.0036 7.8E-08 55.9 11.1 119 84-216 16-143 (177)
67 cd01452 VWA_26S_proteasome_sub 97.2 0.0063 1.4E-07 55.6 12.2 160 51-243 6-174 (187)
68 PRK13685 hypothetical protein; 97.1 0.0063 1.4E-07 59.9 12.0 140 49-216 89-239 (326)
69 PF04564 U-box: U-box domain; 97.0 0.0002 4.4E-09 55.4 0.6 44 310-353 3-52 (73)
70 cd01451 vWA_Magnesium_chelatas 97.0 0.026 5.6E-07 50.3 14.3 129 85-225 18-154 (178)
71 COG5243 HRD1 HRD ubiquitin lig 97.0 0.00022 4.7E-09 70.5 0.6 44 308-351 284-345 (491)
72 COG5540 RING-finger-containing 97.0 0.00027 5.8E-09 68.2 1.1 41 311-351 323-372 (374)
73 cd01481 vWA_collagen_alpha3-VI 96.9 0.015 3.3E-07 51.6 12.1 128 84-227 16-155 (165)
74 PF12678 zf-rbx1: RING-H2 zinc 96.9 0.00026 5.6E-09 54.9 0.7 36 312-347 20-73 (73)
75 COG5236 Uncharacterized conser 96.9 0.00051 1.1E-08 67.4 2.6 46 309-354 59-111 (493)
76 KOG0311 Predicted E3 ubiquitin 96.9 4.6E-05 1E-09 74.7 -4.5 49 307-355 39-94 (381)
77 KOG2879 Predicted E3 ubiquitin 96.8 0.001 2.3E-08 63.4 3.2 43 309-351 237-287 (298)
78 PRK13406 bchD magnesium chelat 96.6 0.029 6.2E-07 59.8 13.0 149 47-227 400-559 (584)
79 PF14447 Prok-RING_4: Prokaryo 96.6 0.00095 2.1E-08 48.8 1.3 42 311-352 7-51 (55)
80 PF09967 DUF2201: VWA-like dom 96.6 0.011 2.4E-07 50.4 8.1 121 51-224 1-125 (126)
81 cd01458 vWA_ku Ku70/Ku80 N-ter 96.6 0.066 1.4E-06 49.4 13.7 158 50-224 3-183 (218)
82 KOG0804 Cytoplasmic Zn-finger 96.5 0.0014 3.1E-08 66.2 2.1 46 306-351 170-222 (493)
83 KOG4159 Predicted E3 ubiquitin 96.4 0.0011 2.5E-08 66.9 1.3 44 309-352 82-130 (398)
84 KOG0802 E3 ubiquitin ligase [P 96.4 0.0008 1.7E-08 70.8 -0.1 44 307-350 287-340 (543)
85 TIGR02031 BchD-ChlD magnesium 96.3 0.066 1.4E-06 57.1 13.5 146 49-226 408-571 (589)
86 KOG1039 Predicted E3 ubiquitin 96.1 0.0024 5.1E-08 63.5 1.3 46 309-354 159-224 (344)
87 TIGR03436 acidobact_VWFA VWFA- 96.1 0.14 2.9E-06 49.4 13.5 135 48-215 53-204 (296)
88 KOG4628 Predicted E3 ubiquitin 95.9 0.0034 7.3E-08 62.3 1.6 42 312-353 230-280 (348)
89 cd01455 vWA_F11C1-5a_type Von 95.9 0.1 2.3E-06 47.8 10.9 157 50-226 2-163 (191)
90 KOG3002 Zn finger protein [Gen 95.8 0.0045 9.8E-08 60.5 2.0 47 307-353 44-93 (299)
91 KOG1813 Predicted E3 ubiquitin 95.8 0.0039 8.5E-08 60.1 1.2 43 312-354 242-289 (313)
92 COG5152 Uncharacterized conser 95.7 0.0028 6.1E-08 57.9 -0.1 44 311-354 196-244 (259)
93 TIGR02442 Cob-chelat-sub cobal 95.4 0.21 4.5E-06 53.7 12.7 145 49-224 466-621 (633)
94 PRK10997 yieM hypothetical pro 95.3 0.43 9.3E-06 49.8 14.4 145 47-226 322-469 (487)
95 PF14570 zf-RING_4: RING/Ubox 95.2 0.0067 1.5E-07 43.4 0.6 37 314-350 1-47 (48)
96 PF12861 zf-Apc11: Anaphase-pr 95.1 0.013 2.8E-07 46.8 1.9 40 312-351 33-82 (85)
97 KOG1002 Nucleotide excision re 94.9 0.006 1.3E-07 62.9 -0.5 45 307-351 532-586 (791)
98 KOG0825 PHD Zn-finger protein 94.8 0.0051 1.1E-07 65.9 -1.3 46 310-355 122-175 (1134)
99 KOG0297 TNF receptor-associate 94.7 0.019 4.2E-07 58.2 2.4 47 308-354 18-70 (391)
100 TIGR00868 hCaCC calcium-activa 94.6 0.5 1.1E-05 52.5 13.1 143 50-226 306-451 (863)
101 KOG3039 Uncharacterized conser 93.7 0.037 8.1E-07 52.3 1.9 44 310-353 220-272 (303)
102 KOG1001 Helicase-like transcri 93.6 0.025 5.4E-07 61.1 0.8 40 312-352 455-501 (674)
103 PF05762 VWA_CoxE: VWA domain 93.5 0.8 1.7E-05 42.6 10.6 88 104-201 90-178 (222)
104 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.06 1.3E-06 51.5 3.0 45 308-352 110-162 (260)
105 COG5175 MOT2 Transcriptional r 93.1 0.031 6.7E-07 55.0 0.4 44 309-352 12-65 (480)
106 KOG2660 Locus-specific chromos 92.2 0.029 6.2E-07 55.0 -1.0 48 307-354 11-64 (331)
107 KOG0826 Predicted E3 ubiquitin 91.8 0.11 2.4E-06 51.0 2.4 44 308-351 297-346 (357)
108 KOG0828 Predicted E3 ubiquitin 90.9 0.074 1.6E-06 54.7 0.2 45 308-352 568-635 (636)
109 PF11789 zf-Nse: Zinc-finger o 90.3 0.084 1.8E-06 39.0 0.1 37 309-345 9-53 (57)
110 PF05290 Baculo_IE-1: Baculovi 90.2 0.1 2.2E-06 45.0 0.4 43 311-353 80-134 (140)
111 KOG1814 Predicted E3 ubiquitin 90.0 0.09 1.9E-06 53.0 -0.0 31 310-340 183-217 (445)
112 KOG1734 Predicted RING-contain 89.1 0.17 3.6E-06 48.6 1.0 44 309-352 222-282 (328)
113 COG5222 Uncharacterized conser 89.0 0.16 3.4E-06 49.4 0.7 37 312-348 275-318 (427)
114 KOG2113 Predicted RNA binding 86.4 0.51 1.1E-05 46.2 2.6 48 309-356 341-392 (394)
115 PF03854 zf-P11: P-11 zinc fin 86.2 0.32 6.8E-06 34.7 0.8 43 312-355 3-50 (50)
116 COG1240 ChlD Mg-chelatase subu 85.1 3.7 8.1E-05 39.4 7.6 107 99-217 111-224 (261)
117 COG4245 TerY Uncharacterized p 84.3 3.5 7.5E-05 37.9 6.7 81 145-226 71-160 (207)
118 PF10367 Vps39_2: Vacuolar sor 84.2 0.54 1.2E-05 37.9 1.4 32 308-339 75-109 (109)
119 KOG2932 E3 ubiquitin ligase in 83.7 0.43 9.3E-06 46.7 0.7 40 313-353 92-136 (389)
120 COG5219 Uncharacterized conser 83.3 0.42 9E-06 52.9 0.5 43 310-352 1468-1524(1525)
121 COG2425 Uncharacterized protei 81.0 6.2 0.00013 40.7 7.9 79 127-212 326-405 (437)
122 KOG2068 MOT2 transcription fac 80.5 3.2 7E-05 41.0 5.4 44 310-353 248-300 (327)
123 KOG1493 Anaphase-promoting com 79.9 0.44 9.4E-06 37.4 -0.6 41 311-351 31-81 (84)
124 PF02891 zf-MIZ: MIZ/SP-RING z 78.9 0.95 2.1E-05 32.5 0.9 38 312-349 3-50 (50)
125 PF11793 FANCL_C: FANCL C-term 78.2 0.63 1.4E-05 35.7 -0.2 42 311-352 2-67 (70)
126 PF04710 Pellino: Pellino; In 75.9 0.87 1.9E-05 46.0 0.0 42 311-352 328-402 (416)
127 PF10272 Tmpp129: Putative tra 74.1 2.6 5.6E-05 42.4 2.8 19 310-328 270-290 (358)
128 smart00744 RINGv The RING-vari 73.0 2 4.3E-05 30.6 1.3 35 313-347 1-49 (49)
129 KOG4362 Transcriptional regula 72.4 0.94 2E-05 48.8 -0.7 45 308-352 18-70 (684)
130 PF11775 CobT_C: Cobalamin bio 72.0 15 0.00033 34.5 7.2 43 171-215 134-187 (219)
131 KOG3842 Adaptor protein Pellin 70.3 2.7 5.8E-05 41.4 1.9 43 310-352 340-415 (429)
132 COG4548 NorD Nitric oxide redu 70.2 14 0.00029 39.2 7.0 164 49-240 447-619 (637)
133 PHA03096 p28-like protein; Pro 69.9 1.7 3.6E-05 42.4 0.4 29 312-340 179-216 (284)
134 PF05883 Baculo_RING: Baculovi 69.1 1 2.2E-05 39.1 -1.2 30 311-340 26-65 (134)
135 PF04216 FdhE: Protein involve 68.5 1.8 4E-05 41.9 0.3 48 310-357 171-228 (290)
136 COG5194 APC11 Component of SCF 68.4 2.8 6.1E-05 33.2 1.3 40 312-351 32-81 (88)
137 KOG3799 Rab3 effector RIM1 and 67.8 2 4.2E-05 37.4 0.3 38 309-350 63-117 (169)
138 KOG4445 Uncharacterized conser 65.7 0.97 2.1E-05 44.1 -2.1 42 311-352 115-187 (368)
139 KOG3579 Predicted E3 ubiquitin 63.7 5.1 0.00011 39.0 2.3 31 309-339 266-301 (352)
140 KOG1428 Inhibitor of type V ad 62.4 2.5 5.5E-05 49.1 0.0 45 309-353 3484-3546(3738)
141 PRK03564 formate dehydrogenase 61.8 5.8 0.00013 39.2 2.4 40 310-349 186-235 (309)
142 KOG2817 Predicted E3 ubiquitin 60.0 3.9 8.4E-05 41.4 0.8 41 310-350 333-384 (394)
143 KOG2353 L-type voltage-depende 55.6 87 0.0019 36.3 10.5 146 49-222 226-382 (1104)
144 KOG2113 Predicted RNA binding 54.7 4.8 0.0001 39.7 0.5 45 310-354 135-186 (394)
145 PF01363 FYVE: FYVE zinc finge 53.1 4.8 0.0001 30.1 0.2 32 308-339 6-42 (69)
146 PF07191 zinc-ribbons_6: zinc- 51.2 2.2 4.8E-05 32.9 -1.9 38 312-352 2-42 (70)
147 KOG1812 Predicted E3 ubiquitin 51.0 6 0.00013 40.2 0.5 31 310-340 145-180 (384)
148 PF06415 iPGM_N: BPG-independe 50.4 22 0.00047 33.6 4.1 68 156-226 13-88 (223)
149 TIGR01562 FdhE formate dehydro 49.4 9 0.00019 37.8 1.5 40 310-349 183-233 (305)
150 PF02601 Exonuc_VII_L: Exonucl 49.2 70 0.0015 31.1 7.7 89 128-221 23-123 (319)
151 PF10571 UPF0547: Uncharacteri 48.0 12 0.00026 23.3 1.3 19 313-331 2-23 (26)
152 TIGR01651 CobT cobaltochelatas 46.7 48 0.001 35.7 6.3 47 170-216 513-568 (600)
153 KOG3161 Predicted E3 ubiquitin 46.2 8.2 0.00018 41.5 0.6 28 321-349 25-55 (861)
154 KOG0825 PHD Zn-finger protein 45.9 8.6 0.00019 42.2 0.8 26 327-352 120-155 (1134)
155 KOG1815 Predicted E3 ubiquitin 45.5 13 0.00027 38.4 1.9 31 309-339 68-100 (444)
156 PF09297 zf-NADH-PPase: NADH p 43.9 6.1 0.00013 25.4 -0.4 20 330-349 3-30 (32)
157 PF02601 Exonuc_VII_L: Exonucl 43.7 84 0.0018 30.5 7.3 67 156-227 25-97 (319)
158 PF03731 Ku_N: Ku70/Ku80 N-ter 42.3 2.6E+02 0.0057 25.3 10.0 146 51-213 2-172 (224)
159 COG4306 Uncharacterized protei 42.2 8.8 0.00019 33.0 0.1 24 332-355 30-54 (160)
160 PF10083 DUF2321: Uncharacteri 42.0 8.6 0.00019 34.2 0.0 27 330-356 28-55 (158)
161 PLN02189 cellulose synthase 41.4 17 0.00036 41.4 2.2 42 311-352 34-88 (1040)
162 KOG3039 Uncharacterized conser 40.7 13 0.00029 35.5 1.1 33 307-339 39-72 (303)
163 PF14569 zf-UDP: Zinc-binding 40.5 25 0.00053 27.8 2.3 43 310-352 8-63 (80)
164 KOG3842 Adaptor protein Pellin 40.3 16 0.00034 36.2 1.5 29 322-350 316-351 (429)
165 PF00113 Enolase_C: Enolase, C 39.4 1.2E+02 0.0027 29.7 7.6 152 31-211 80-234 (295)
166 KOG3899 Uncharacterized conser 39.0 10 0.00022 37.1 0.1 20 332-351 329-365 (381)
167 COG2816 NPY1 NTP pyrophosphohy 38.4 15 0.00032 35.8 1.0 24 329-352 110-141 (279)
168 PHA02825 LAP/PHD finger-like p 38.2 17 0.00037 32.5 1.3 44 309-352 6-60 (162)
169 KOG0298 DEAD box-containing he 36.8 5.6 0.00012 45.8 -2.4 44 308-351 1150-1199(1394)
170 KOG2169 Zn-finger transcriptio 36.3 17 0.00037 39.4 1.2 43 307-352 302-357 (636)
171 KOG0781 Signal recognition par 36.0 77 0.0017 33.5 5.7 89 154-246 450-542 (587)
172 PF13240 zinc_ribbon_2: zinc-r 35.4 16 0.00034 22.0 0.4 17 333-349 2-22 (23)
173 PF15039 DUF4530: Domain of un 34.6 42 0.00092 27.5 2.9 34 263-296 1-34 (111)
174 PRK00286 xseA exodeoxyribonucl 34.4 1.3E+02 0.0028 30.8 7.3 65 158-227 148-214 (438)
175 KOG2114 Vacuolar assembly/sort 33.2 13 0.00027 41.3 -0.4 43 312-354 841-886 (933)
176 PF07975 C1_4: TFIIH C1-like d 30.9 37 0.0008 24.6 1.8 21 327-347 26-50 (51)
177 PF10497 zf-4CXXC_R1: Zinc-fin 30.3 32 0.00069 28.5 1.6 38 311-348 7-69 (105)
178 PF06906 DUF1272: Protein of u 30.2 22 0.00047 26.3 0.6 28 326-353 23-54 (57)
179 KOG4146 Ubiquitin-like protein 30.2 2.3E+02 0.005 23.2 6.4 64 150-240 33-96 (101)
180 PLN02436 cellulose synthase A 29.7 30 0.00066 39.5 1.8 41 312-352 37-90 (1094)
181 TIGR02493 PFLA pyruvate format 29.1 3.8E+02 0.0082 24.4 8.8 70 145-225 67-138 (235)
182 KOG4217 Nuclear receptors of t 28.8 32 0.00068 35.9 1.6 33 300-337 258-293 (605)
183 KOG1202 Animal-type fatty acid 28.6 57 0.0012 38.2 3.6 83 90-186 2132-2221(2376)
184 PLN02400 cellulose synthase 28.6 29 0.00062 39.7 1.4 41 312-352 37-90 (1085)
185 PF10764 Gin: Inhibitor of sig 28.1 26 0.00057 24.7 0.6 28 313-340 1-28 (46)
186 TIGR00237 xseA exodeoxyribonuc 28.1 1.9E+02 0.004 29.8 7.1 66 157-227 141-209 (432)
187 PF02318 FYVE_2: FYVE-type zin 28.0 7.6 0.00017 32.6 -2.5 40 310-349 53-103 (118)
188 PF10235 Cript: Microtubule-as 27.4 33 0.00071 27.8 1.2 38 311-352 44-81 (90)
189 COG2956 Predicted N-acetylgluc 27.4 25 0.00053 35.3 0.5 20 329-348 353-376 (389)
190 KOG1729 FYVE finger containing 26.8 14 0.00031 36.1 -1.2 42 309-350 166-224 (288)
191 smart00064 FYVE Protein presen 26.7 52 0.0011 24.3 2.1 30 311-340 10-44 (68)
192 COG1570 XseA Exonuclease VII, 26.7 1.8E+02 0.0038 30.3 6.5 69 156-227 146-215 (440)
193 KOG1941 Acetylcholine receptor 26.2 15 0.00033 37.4 -1.2 31 83-113 19-51 (518)
194 PLN02638 cellulose synthase A 25.9 32 0.00068 39.4 1.1 41 311-351 17-70 (1079)
195 cd00065 FYVE FYVE domain; Zinc 25.8 45 0.00098 23.6 1.6 29 312-340 3-36 (57)
196 COG1488 PncB Nicotinic acid ph 25.8 2.9E+02 0.0062 28.4 7.9 62 144-216 264-325 (405)
197 smart00834 CxxC_CXXC_SSSS Puta 25.7 29 0.00062 22.9 0.5 15 339-353 25-39 (41)
198 PRK14714 DNA polymerase II lar 25.7 56 0.0012 38.1 3.0 42 311-353 667-722 (1337)
199 COG5109 Uncharacterized conser 24.5 31 0.00068 34.2 0.7 39 311-349 336-385 (396)
200 COG4822 CbiK Cobalamin biosynt 24.2 3E+02 0.0064 26.2 6.9 169 28-216 56-242 (265)
201 COG3864 Uncharacterized protei 23.8 73 0.0016 31.8 3.0 50 150-215 325-374 (396)
202 cd00350 rubredoxin_like Rubred 23.7 27 0.00058 22.6 0.0 15 340-354 17-31 (33)
203 KOG3268 Predicted E3 ubiquitin 23.3 33 0.00072 31.3 0.6 45 309-353 163-230 (234)
204 KOG1940 Zn-finger protein [Gen 23.3 19 0.00042 35.0 -1.0 40 314-354 161-209 (276)
205 COG3959 Transketolase, N-termi 23.2 87 0.0019 29.8 3.3 34 169-207 138-171 (243)
206 PRK09004 FMN-binding protein M 23.2 1.8E+02 0.0039 25.0 5.2 51 173-226 47-107 (146)
207 cd08195 DHQS Dehydroquinate sy 23.0 3.5E+02 0.0075 26.6 7.8 67 147-217 28-96 (345)
208 KOG3053 Uncharacterized conser 22.9 26 0.00056 33.8 -0.2 47 307-353 16-84 (293)
209 KOG3113 Uncharacterized conser 22.7 48 0.001 32.0 1.5 42 311-352 111-159 (293)
210 COG1436 NtpG Archaeal/vacuolar 22.0 1.8E+02 0.0038 24.1 4.6 57 158-221 34-90 (104)
211 KOG1815 Predicted E3 ubiquitin 21.6 59 0.0013 33.5 2.1 13 327-339 183-195 (444)
212 PRK00979 tetrahydromethanopter 21.4 1.8E+02 0.0038 28.9 5.2 47 156-208 55-101 (308)
213 TIGR00640 acid_CoA_mut_C methy 21.3 1.4E+02 0.0029 25.6 3.9 34 191-225 70-105 (132)
214 KOG2034 Vacuolar sorting prote 20.9 30 0.00064 38.7 -0.3 31 309-339 815-848 (911)
215 PF13353 Fer4_12: 4Fe-4S singl 20.8 2.1E+02 0.0045 23.6 5.0 51 134-186 42-97 (139)
216 PF00532 Peripla_BP_1: Peripla 20.6 2.8E+02 0.0062 26.2 6.4 81 154-244 15-103 (279)
217 COG3813 Uncharacterized protei 20.6 46 0.00099 26.0 0.7 24 329-352 28-53 (84)
218 PF04423 Rad50_zn_hook: Rad50 20.5 37 0.0008 24.3 0.2 11 342-352 22-32 (54)
219 PF10217 DUF2039: Uncharacteri 20.5 29 0.00063 28.3 -0.4 35 312-349 56-90 (92)
220 PLN02915 cellulose synthase A 20.3 53 0.0012 37.6 1.5 42 310-351 14-68 (1044)
221 cd00729 rubredoxin_SM Rubredox 20.2 38 0.00083 22.2 0.2 13 341-353 19-31 (34)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-74 Score=576.82 Aligned_cols=249 Identities=34% Similarity=0.505 Sum_probs=228.2
Q ss_pred CCCCCCCCCCCCCccchhhhhccCCCceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccccc
Q 018272 21 SVDFAEPPRFDDELPEAPAGVRDPSKVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF 100 (358)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~y 100 (358)
..+...+.+.|+++++++-.+..+|++++||+||||||+||+|+|. +.||||| ++...|+||+||++||++|++|
T Consensus 258 k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi-~p~~~N~Y~~Ai~~vG~~lq~y 332 (529)
T KOG1327|consen 258 KNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYI-DPHQPNPYEQAIRSVGETLQDY 332 (529)
T ss_pred cccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceec-CCCCCCHHHHHHHHHhhhhccc
Confidence 3468889999999999999999999999999999999999999876 4499999 6788999999999999999999
Q ss_pred CCC-ceeEEeecCCCCCC---CCc--cccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC---C
Q 018272 101 DGD-CIRCYGFGDDTTRD---EGV--FSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---G 171 (358)
Q Consensus 101 D~d-~ip~~GFGa~~~~~---~~~--f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~---~ 171 (358)
|+| +||+|||||+.+++ +++ |+|++.||+|.|++||++||++++|+|+|+|||||+|||++|+++|+++. .
T Consensus 333 dsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~ 412 (529)
T KOG1327|consen 333 DSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAG 412 (529)
T ss_pred CCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCc
Confidence 999 99999999998763 454 55678899999999999999999999999999999999999999999885 7
Q ss_pred ceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCCCCC-------cccceeEeeecccc
Q 018272 172 LHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDKIPA-------LQFDNFHFVNFTAI 244 (358)
Q Consensus 172 ~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~~~~-------r~rDnvqFV~f~~~ 244 (358)
+||||||||||+|+| |++|++|||.||+|||||||||||++||+.|++||++.+. +.|||||||+|+|+
T Consensus 413 qY~VLlIitDG~vTd----m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~vQFV~f~~~ 488 (529)
T KOG1327|consen 413 QYHVLLIITDGVVTD----MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDNVQFVPFRDI 488 (529)
T ss_pred ceEEEEEEeCCcccc----HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccccceEeecHHHH
Confidence 999999999999999 9999999999999999999999999999999999987665 78999999999999
Q ss_pred ccccccchhHHHHHHHH-HHH---HHHHHhhhcccccc
Q 018272 245 MSKTTTTAEKAKDFAAA-LIN---ASMAADELGIMSRM 278 (358)
Q Consensus 245 ~~~~~~~~~~~~~la~~-L~E---qy~~~~~~~~l~~~ 278 (358)
++++.+...++++||+. ||| ||..+++++-+..+
T Consensus 489 ~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~ 526 (529)
T KOG1327|consen 489 MNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPK 526 (529)
T ss_pred hhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence 98765555578999999 999 99999999655443
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=2.3e-68 Score=503.60 Aligned_cols=217 Identities=42% Similarity=0.695 Sum_probs=192.1
Q ss_pred CCCCccchhhhhccCCCceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEE
Q 018272 30 FDDELPEAPAGVRDPSKVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCY 108 (358)
Q Consensus 30 ~~~~~~~~~~~l~~~gl~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~ 108 (358)
.+++||++ ++|+ ++||+||||||+||||+++ ++||||+ ++...|+||+||++||+||++||+| +||+|
T Consensus 19 ~~tFldy~-----~~G~-~~nl~vaIDfT~SNg~p~~----~~SLHy~-~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~ 87 (254)
T cd01459 19 QPTFLDYR-----SAGL-ESNLIVAIDFTKSNGWPGE----KRSLHYI-SPGRLNPYQKAIRIVGEVLQPYDSDKLIPAF 87 (254)
T ss_pred CCCHHHHH-----hCCC-eeeEEEEEEeCCCCCCCCC----CCCcccC-CCCCccHHHHHHHHHHHHHHhcCCCCceeeE
Confidence 55556555 4444 5799999999999999765 6899999 5778999999999999999999999 99999
Q ss_pred eecCCCCCCC---CccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCc
Q 018272 109 GFGDDTTRDE---GVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQ 183 (358)
Q Consensus 109 GFGa~~~~~~---~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~--~Y~VLlIiTDG~ 183 (358)
|||++.++.. ++|++++++|+|.|++||+++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+
T Consensus 88 GFGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~ 167 (254)
T cd01459 88 GFGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGE 167 (254)
T ss_pred eecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCC
Confidence 9999987654 44555688999999999999999999999999999999999999999987643 499999999999
Q ss_pred cCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccC-------CCCCcccceeEeeeccccccccccchhHHH
Q 018272 184 VATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHD-------KIPALQFDNFHFVNFTAIMSKTTTTAEKAK 256 (358)
Q Consensus 184 i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~-------~~~~r~rDnvqFV~f~~~~~~~~~~~~~~~ 256 (358)
|+| +++|+++|++||++||||||||||+++|+.|++||+ .++.|.|||||||+|+++.... .++++
T Consensus 168 i~D----~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~---~~~~~ 240 (254)
T cd01459 168 ITD----MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA---GNPEA 240 (254)
T ss_pred ccc----HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc---cccHH
Confidence 999 999999999999999999999999999999999997 3466789999999999997542 13468
Q ss_pred HHHHH-HHH
Q 018272 257 DFAAA-LIN 264 (358)
Q Consensus 257 ~la~~-L~E 264 (358)
+||++ |+|
T Consensus 241 ~La~~~L~E 249 (254)
T cd01459 241 ALATAALAE 249 (254)
T ss_pred HHHHHHHHh
Confidence 99999 999
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=2.1e-49 Score=346.21 Aligned_cols=137 Identities=44% Similarity=0.772 Sum_probs=128.9
Q ss_pred CcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCC---CCccccC--CCCCCCCCHHHHHHHHHhcCCc
Q 018272 73 SLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRD---EGVFSFQ--ENDSPCQGFEHVLECYRKNVPN 146 (358)
Q Consensus 73 sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~---~~~f~~~--~~~~~~~g~~gvl~~Y~~~l~~ 146 (358)
||||+ ++..+|+||+||++||++|++||+| +||+|||||+.+++ +++|+|+ +++|+|.|++||+++|++++++
T Consensus 1 SLH~~-~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~ 79 (146)
T PF07002_consen 1 SLHYI-SPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPK 79 (146)
T ss_pred CcccC-CCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhh
Confidence 89999 5667999999999999999999999 99999999998865 4668876 5789999999999999999999
Q ss_pred eeeccCCChHHHHHHHHHHHHh---cCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeC
Q 018272 147 VQYFGPTSYAPMVEAAVDIVEE---SGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVG 214 (358)
Q Consensus 147 v~l~gpt~fapvI~~a~~~~~~---~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG 214 (358)
|+|+|||+|+|||++|++++++ .+++|+||||||||+|+| |++|++||++||++||||||||||
T Consensus 80 v~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D----~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 80 VQLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD----MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred eEECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc----HHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999999999999999999984 567899999999999999 999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.96 E-value=5.9e-28 Score=219.75 Aligned_cols=174 Identities=23% Similarity=0.307 Sum_probs=147.1
Q ss_pred CChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHH
Q 018272 83 LNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEA 161 (358)
Q Consensus 83 ~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~ 161 (358)
....|++++++..+..+||+| .+++|.||.+..+...+ ....+++.++.....++.+...|.|+++|||++
T Consensus 20 ~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~ 91 (200)
T PF10138_consen 20 DGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------TLDNYEGYVDELHAGLPDWGRMGGTNYAPVMED 91 (200)
T ss_pred CccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------CHHHHHHHHHHHhccccccCCCCCcchHHHHHH
Confidence 578999999999999999999 99999999986655433 223567777666555555666678999999999
Q ss_pred HHHHHHhc-C-CceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCCCCCcccceeEee
Q 018272 162 AVDIVEES-G-GLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDKIPALQFDNFHFV 239 (358)
Q Consensus 162 a~~~~~~~-~-~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~~~~r~rDnvqFV 239 (358)
|++.+.+. . ......|++|||+++| .+++.++|++||++||+|+|||||+.+|+.|++||+ +.+|..||+.||
T Consensus 92 v~~~y~~~~~~~~P~~VlFiTDG~~~~----~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff 166 (200)
T PF10138_consen 92 VLDHYFKREPSDAPALVLFITDGGPDD----RRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFF 166 (200)
T ss_pred HHHHHhhcCCCCCCeEEEEEecCCccc----hHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeE
Confidence 99998743 2 2245557789999999 899999999999999999999999999999999999 588999999999
Q ss_pred eccccccccccchhHHHHHHHH-HHH--HH-HHHhhhccc
Q 018272 240 NFTAIMSKTTTTAEKAKDFAAA-LIN--AS-MAADELGIM 275 (358)
Q Consensus 240 ~f~~~~~~~~~~~~~~~~la~~-L~E--qy-~~~~~~~~l 275 (358)
.+.++...+ |++|+.. |.| +| ++++..|+|
T Consensus 167 ~~~d~~~ls------D~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 167 AIDDIDELS------DEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred ecCCcccCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999986543 7899999 988 77 999999886
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.82 E-value=1.1e-19 Score=165.55 Aligned_cols=169 Identities=20% Similarity=0.174 Sum_probs=126.6
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~ 128 (358)
++++.||.|+|+++. +.+.++| +.+.+++++.+++.++..||.| ...+++||.. .. .++.
T Consensus 4 dvv~~ID~SgSM~~~----~~~~~~~------k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~-~~---~~~~----- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEA----DEAKERS------RWEEAQESTRALARKCEEYDSDGITVYLFSGDF-RR---YDNV----- 64 (199)
T ss_pred CEEEEEECCCcCCCC----CCCCCch------HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCc-cc---cCCc-----
Confidence 678999999999742 1122344 3499999999999999999999 5455555443 11 1111
Q ss_pred CCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc------CCceEEEEEEeCCccCCcchhHHHHHHHHHHhc
Q 018272 129 PCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES------GGLHHVLVIITSGQVATGSQQEQETIRSIVDAS 202 (358)
Q Consensus 129 ~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~------~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS 202 (358)
..+++.++|.+.. ..|+|++.+.|+.+++...+. ...+.+++|||||..+| .+++.++|++|+
T Consensus 65 ---~~~~v~~~~~~~~----p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d----~~~~~~~i~~a~ 133 (199)
T cd01457 65 ---NSSKVDQLFAENS----PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD----KDAVERVIIKAS 133 (199)
T ss_pred ---CHHHHHHHHhcCC----CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc----HHHHHHHHHHHH
Confidence 1667777775544 469999999999997543221 12378889999999998 889999999998
Q ss_pred CC-----CeEEEEEeeCCC--CchhhhhccCCC--CCcccceeEeeecccccccc
Q 018272 203 SY-----PLSIVLVGVGDG--PWESIQKFHDKI--PALQFDNFHFVNFTAIMSKT 248 (358)
Q Consensus 203 ~l-----PlSIiiVGVG~~--~f~~m~~LD~~~--~~r~rDnvqFV~f~~~~~~~ 248 (358)
+. +|.|.|||||++ .|..|++||+.+ .++.||||+||+|+++...+
T Consensus 134 ~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~~ 188 (199)
T cd01457 134 DELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERLT 188 (199)
T ss_pred HhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcCC
Confidence 63 788888888875 899999999864 34679999999999986654
No 6
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.4e-11 Score=87.79 Aligned_cols=47 Identities=40% Similarity=0.987 Sum_probs=43.2
Q ss_pred CCccCcccCCCCeee-cCCCC-CchhhhhcC-----CCCCCCccccCCeeecCC
Q 018272 312 QRCCICCEDEKDTAF-ECGHM-SCIKCALRM-----PQCPFCREEITTRRRVYP 358 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~-----~~CP~CR~~i~~~~~~f~ 358 (358)
.+|.||+|++.|.++ -|||+ +|.+|+.++ ..||+||.+|..+++.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 689999999999998 99999 999999987 359999999999998875
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.95 E-value=1.4e-10 Score=83.22 Aligned_cols=43 Identities=40% Similarity=1.035 Sum_probs=37.6
Q ss_pred CCCccCcccCCCCeee-cCCCC-CchhhhhcC----CCCCCCccccCCe
Q 018272 311 AQRCCICCEDEKDTAF-ECGHM-SCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
+..|.||++...++++ ||||. +|..|+.++ ..||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999988 99999 999999998 7899999999864
No 8
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-10 Score=108.53 Aligned_cols=48 Identities=44% Similarity=1.079 Sum_probs=46.2
Q ss_pred CCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecCC
Q 018272 311 AQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVYP 358 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f~ 358 (358)
..+|.||+|.++|.+| +|||+ .|.+|..+|..||+||+.|.+++|+|+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 6799999999999998 99999 899999999999999999999999986
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.3e-09 Score=96.28 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=42.5
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCCccccCC--eeecC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFCREEITT--RRRVY 357 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-------~~CP~CR~~i~~--~~~~f 357 (358)
.....|-||+|..+++|+ .|||+||+.|+-+| +.||+|+..++. ++.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 446899999999999999 99999999999988 569999998876 45555
No 10
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.65 E-value=3.5e-07 Score=79.35 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=104.9
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccccC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQ 124 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~~ 124 (358)
+++.+.||-|.|.. ......+...+..++..+. ++ .+-+++|++.... .+++.
T Consensus 2 ~~v~l~vD~S~SM~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~ 58 (177)
T smart00327 2 LDVVFLLDGSGSMG--------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN 58 (177)
T ss_pred ccEEEEEeCCCccc--------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc
Confidence 46889999998863 1122334444444444444 47 9999999985321 22221
Q ss_pred CCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc---C--CceEEEEEEeCCccCCcchhHHHHHHHHH
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES---G--GLHHVLVIITSGQVATGSQQEQETIRSIV 199 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~---~--~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv 199 (358)
...+.+.+.+......+. ..|.|++...|+.+++..++. . ....+++|||||...+ .+.+.+++.
T Consensus 59 ----~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~----~~~~~~~~~ 128 (177)
T smart00327 59 ----DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESND----GGDLLKAAK 128 (177)
T ss_pred ----ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCC----CccHHHHHH
Confidence 245777777777765543 578899999999999887521 1 1257889999999887 357788888
Q ss_pred HhcCCCeEEEEEeeCCC-CchhhhhccCCCC
Q 018272 200 DASSYPLSIVLVGVGDG-PWESIQKFHDKIP 229 (358)
Q Consensus 200 ~AS~lPlSIiiVGVG~~-~f~~m~~LD~~~~ 229 (358)
.+....+.|++||+|+. +...|+.|.....
T Consensus 129 ~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~ 159 (177)
T smart00327 129 ELKRSGVKVFVVGVGNDVDEEELKKLASAPG 159 (177)
T ss_pred HHHHCCCEEEEEEccCccCHHHHHHHhCCCc
Confidence 88888899999999998 9999999987533
No 11
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-08 Score=99.57 Aligned_cols=49 Identities=33% Similarity=0.877 Sum_probs=43.2
Q ss_pred ccCCCccCcccCCCCeee-cCCCC-CchhhhhcC----CCCCCCccccCCeeecC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRM----PQCPFCREEITTRRRVY 357 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~----~~CP~CR~~i~~~~~~f 357 (358)
++..+|.||+...+|+++ ||+|+ +|..|+..+ ..||+||++|...+.++
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 446899999999999887 99999 899999976 46999999999877764
No 12
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.57 E-value=1.4e-06 Score=76.08 Aligned_cols=147 Identities=19% Similarity=0.248 Sum_probs=101.9
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
.++.+.+|-|.|=. + ...+.+-.++..++..+..+ .+.+++|+....... +.
T Consensus 3 ~~v~~vlD~S~SM~--------~------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~---~~---- 55 (171)
T cd01461 3 KEVVFVIDTSGSMS--------G------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFS---PS---- 55 (171)
T ss_pred ceEEEEEECCCCCC--------C------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeec---Cc----
Confidence 46788899887742 1 12456677777788888877 999999998743211 11
Q ss_pred CCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeE
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLS 207 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlS 207 (358)
....+.+.+ +...+.+..+...|-|++...|+.+.+..+.....--++++||||...+ ..++.+++.++.+.++.
T Consensus 56 ~~~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~----~~~~~~~~~~~~~~~i~ 130 (171)
T cd01461 56 SVSATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN----ESQILKNVREALSGRIR 130 (171)
T ss_pred ceeCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC----HHHHHHHHHHhcCCCce
Confidence 011122222 2233444455568999999999999888765333346778999999877 67888888888777899
Q ss_pred EEEEeeCC-CCchhhhhccCC
Q 018272 208 IVLVGVGD-GPWESIQKFHDK 227 (358)
Q Consensus 208 IiiVGVG~-~~f~~m~~LD~~ 227 (358)
|..||+|. .+...|+.+-+.
T Consensus 131 i~~i~~g~~~~~~~l~~ia~~ 151 (171)
T cd01461 131 LFTFGIGSDVNTYLLERLARE 151 (171)
T ss_pred EEEEEeCCccCHHHHHHHHHc
Confidence 99999996 467778777653
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2e-08 Score=95.56 Aligned_cols=45 Identities=31% Similarity=0.953 Sum_probs=39.9
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
...+.|.+|+++..++.- ||||.||+.|+..+ ..||+||+++...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 345899999999999887 99999999999988 5799999998874
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.55 E-value=3.3e-08 Score=89.91 Aligned_cols=44 Identities=30% Similarity=0.912 Sum_probs=38.6
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC--------------------CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM--------------------PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~--------------------~~CP~CR~~i~~ 352 (358)
.+...|+||++..+++++ +|||.||+.|+.++ ..||+||.++..
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 456899999999999988 99999999999753 369999999976
No 15
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.8e-08 Score=96.27 Aligned_cols=48 Identities=38% Similarity=1.030 Sum_probs=44.6
Q ss_pred CCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecCC
Q 018272 311 AQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVYP 358 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f~ 358 (358)
...|.||.+.+.+++| ||||+ +|..|...+++||+||+.|...+++|.
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 3599999999999998 99999 899999999999999999999988874
No 16
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.41 E-value=7.9e-06 Score=68.67 Aligned_cols=146 Identities=14% Similarity=0.260 Sum_probs=98.5
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCC---C-ceeEEeecCCCCCCCCccccCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~---d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
++++.||.|.|-. ....+.+...+..++..+.. . .+-+++|+..... .++++.
T Consensus 2 ~v~~viD~S~Sm~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~---~~~~~~ 58 (161)
T cd00198 2 DIVFLLDVSGSMG--------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARV---VLPLTT 58 (161)
T ss_pred cEEEEEeCCCCcC--------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccce---eecccc
Confidence 5788999987731 13344455556666666654 6 9999999974221 122221
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcC
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGSQQEQETIRSIVDASS 203 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~ 203 (358)
. .+.+.+.+.-.. +.. ...|.|++...++.+.+...+. .....++++||||..++. ..+..+.+..+..
T Consensus 59 ~----~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~---~~~~~~~~~~~~~ 129 (161)
T cd00198 59 D----TDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG---PELLAEAARELRK 129 (161)
T ss_pred c----CCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC---cchhHHHHHHHHH
Confidence 1 233444333222 221 4679999999999999998763 446788999999988761 2256666777777
Q ss_pred CCeEEEEEeeCC-CCchhhhhccCC
Q 018272 204 YPLSIVLVGVGD-GPWESIQKFHDK 227 (358)
Q Consensus 204 lPlSIiiVGVG~-~~f~~m~~LD~~ 227 (358)
..+.|.+||+|+ .+-..++.|+..
T Consensus 130 ~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 130 LGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 799999999998 788888888764
No 17
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.41 E-value=4e-06 Score=75.70 Aligned_cols=149 Identities=11% Similarity=0.134 Sum_probs=97.6
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
...++.+.||-|.|=. + +..+.|-.++..++..+..+ .+-++.|+...... +++..
T Consensus 12 ~p~~vv~llD~SgSM~--------~------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~---~~~~~ 68 (190)
T cd01463 12 SPKDIVILLDVSGSMT--------G------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPV---VPCFN 68 (190)
T ss_pred CCceEEEEEECCCCCC--------c------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEE---eeecc
Confidence 4578999999998743 1 12344555566667777777 99999999975422 22211
Q ss_pred C---CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHh---c------CCceEEEEEEeCCccCCcchhHHH
Q 018272 126 N---DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE---S------GGLHHVLVIITSGQVATGSQQEQE 193 (358)
Q Consensus 126 ~---~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~---~------~~~Y~VLlIiTDG~i~d~~~~~~~ 193 (358)
. .......+. ..+.+..++..|.|++...|+.+.+..++ . ...-.++++||||..++ ..+
T Consensus 69 ~~~~~~~~~~~~~----~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----~~~ 140 (190)
T cd01463 69 DTLVQATTSNKKV----LKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN----YKE 140 (190)
T ss_pred cceEecCHHHHHH----HHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc----HhH
Confidence 0 000112233 33445667778999999999999887654 1 11235789999999887 556
Q ss_pred HHHHHHHhc--CCCeEEEEEeeCCC--CchhhhhccC
Q 018272 194 TIRSIVDAS--SYPLSIVLVGVGDG--PWESIQKFHD 226 (358)
Q Consensus 194 t~~aIv~AS--~lPlSIiiVGVG~~--~f~~m~~LD~ 226 (358)
..+++.... ..|+.|..||||.+ +...|+.|=.
T Consensus 141 ~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~ 177 (190)
T cd01463 141 IFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMAC 177 (190)
T ss_pred HHHHhcccccCCCcEEEEEEecCCccccchHHHHHHh
Confidence 666554322 35899999999975 6888887753
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.40 E-value=1.3e-07 Score=88.99 Aligned_cols=47 Identities=30% Similarity=0.759 Sum_probs=38.3
Q ss_pred ccCCCccCcccCCCC--------eee-cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018272 309 AEAQRCCICCEDEKD--------TAF-ECGHMSCIKCALRM----PQCPFCREEITTRRR 355 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~--------~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~ 355 (358)
....+|+||++...+ +++ +|||.||..|+.++ ..||+||.++..+++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 345799999997543 245 89999999999877 679999999998754
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=84.23 Aligned_cols=47 Identities=34% Similarity=0.897 Sum_probs=38.3
Q ss_pred CCCccCcccCCCCee-e--cCCCCCchhhhhcC----CCCCCCccccCC--eeecC
Q 018272 311 AQRCCICCEDEKDTA-F--ECGHMSCIKCALRM----PQCPFCREEITT--RRRVY 357 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v-~--pCgH~~C~~C~~~~----~~CP~CR~~i~~--~~~~f 357 (358)
-..|+|||+....-+ + .|||.||..|+... ..||+||+.|+. .++||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 379999999877644 3 99999999999976 679999988876 34554
No 20
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.36 E-value=6.4e-06 Score=73.73 Aligned_cols=151 Identities=10% Similarity=0.103 Sum_probs=95.7
Q ss_pred HHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHH
Q 018272 86 YQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEA 161 (358)
Q Consensus 86 Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~ 161 (358)
+.++...+..+++.+. ++ .+-++.|+.... .++++... .-...+.+.+.-+........+|-|+++..|+.
T Consensus 19 ~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~--~~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~ 93 (186)
T cd01471 19 VTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP--NSTNKDLALNAIRALLSLYYPNGSTNTTSALLV 93 (186)
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc--cccchHHHHHHHHHHHhCcCCCCCccHHHHHHH
Confidence 4556666667777663 45 899999998643 23444321 111223322222222333345799999999999
Q ss_pred HHHHHHhc----CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCC-CCchhhhhccCCC-CCcccce
Q 018272 162 AVDIVEES----GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGD-GPWESIQKFHDKI-PALQFDN 235 (358)
Q Consensus 162 a~~~~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~-~~f~~m~~LD~~~-~~r~rDn 235 (358)
|.+...+. ...-.+++|||||..++ ..++.++..+..+.++-|.+||||. .+...|+.|-+.. .....++
T Consensus 94 a~~~l~~~~~~r~~~~~~villTDG~~~~----~~~~~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~ 169 (186)
T cd01471 94 VEKHLFDTRGNRENAPQLVIIMTDGIPDS----KFRTLKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPL 169 (186)
T ss_pred HHHHhhccCCCcccCceEEEEEccCCCCC----CcchhHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCe
Confidence 98887541 12235678889999877 4555566666667789999999996 5778888887642 1222567
Q ss_pred eEeeeccccc
Q 018272 236 FHFVNFTAIM 245 (358)
Q Consensus 236 vqFV~f~~~~ 245 (358)
+-..+|+++.
T Consensus 170 ~~~~~~~~~~ 179 (186)
T cd01471 170 YLQSSWSEVQ 179 (186)
T ss_pred eecCCHHHHH
Confidence 7777776664
No 21
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.30 E-value=5.6e-06 Score=73.73 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=94.5
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~ 123 (358)
.+++.+.||-|.|=+ |+ .+ ..-++|+..+...+...+ .+ .+-++.|+.... .++++
T Consensus 3 ~~~v~~llD~SgSM~--~~------~~---------~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l 62 (176)
T cd01464 3 RLPIYLLLDTSGSMA--GE------PI---------EALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPL 62 (176)
T ss_pred CCCEEEEEECCCCCC--Ch------HH---------HHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCC
Confidence 467888999987732 11 11 233456666666555433 34 899999998632 23444
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCc---------eEEEEEEeCCccCCcchhHHHH
Q 018272 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGL---------HHVLVIITSGQVATGSQQEQET 194 (358)
Q Consensus 124 ~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~---------Y~VLlIiTDG~i~d~~~~~~~t 194 (358)
... . ......+...|-|++..-|+++.+...+.... -.++++||||.-+| +....
T Consensus 63 ~~~-------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~---~~~~~ 126 (176)
T cd01464 63 TPL-------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD---DLTAA 126 (176)
T ss_pred ccH-------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc---hHHHH
Confidence 321 1 11234566789999999999998886432111 13678899999877 13444
Q ss_pred HHHHHHhcCCCeEEEEEeeC-CCCchhhhhccCC
Q 018272 195 IRSIVDASSYPLSIVLVGVG-DGPWESIQKFHDK 227 (358)
Q Consensus 195 ~~aIv~AS~lPlSIiiVGVG-~~~f~~m~~LD~~ 227 (358)
.+++.++-..++.|..|||| +.+.+.|++|-+.
T Consensus 127 ~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 127 IERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred HHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 47777777778999999999 4788888888754
No 22
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.25 E-value=2.6e-05 Score=68.02 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=94.7
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
+++.+.+|.|.|=. + ...+.+..++..++..+..+ .+-++.|+..... ++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~--------~------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~---~~~~~~~- 56 (170)
T cd01465 1 LNLVFVIDRSGSMD--------G------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAET---VLPATPV- 56 (170)
T ss_pred CcEEEEEECCCCCC--------C------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccE---EecCccc-
Confidence 57889999998732 1 12556667777788888777 9999999986331 2222211
Q ss_pred CCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCC
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATGSQQEQETIRSIVDASSYP 205 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lP 205 (358)
...+.+.+ .+.+++..|.|++..-++.+.+..++.. ..--.++++|||..++...+.++..+++..+.+..
T Consensus 57 ---~~~~~l~~----~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~ 129 (170)
T cd01465 57 ---RDKAAILA----AIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESG 129 (170)
T ss_pred ---chHHHHHH----HHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCC
Confidence 12233332 3334556889999999999988876542 22255688899987641112455666666666678
Q ss_pred eEEEEEeeCCC-Cchhhhhcc
Q 018272 206 LSIVLVGVGDG-PWESIQKFH 225 (358)
Q Consensus 206 lSIiiVGVG~~-~f~~m~~LD 225 (358)
+-|..||+|.. +...|+++=
T Consensus 130 v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 130 ITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred eEEEEEEeCCCcCHHHHHHHH
Confidence 88999999943 556666654
No 23
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.24 E-value=1.3e-05 Score=68.72 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=94.9
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc---cCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~---yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
++.+.+|.|+|=. + ..++.+...+..++.. .+.+ .+.++.|+..... .+++..
T Consensus 2 di~~llD~S~Sm~--------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~---~~~~~~ 58 (161)
T cd01450 2 DIVFLLDGSESVG--------P------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV---EFSLND 58 (161)
T ss_pred cEEEEEeCCCCcC--------H------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE---EEECCC
Confidence 5678888876632 1 1333444444444444 4457 9999999986431 233321
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccCCcchhHHHHHHHHHHh
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG----GLHHVLVIITSGQVATGSQQEQETIRSIVDA 201 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~A 201 (358)
.. ..+.+.+......... .|-|++...++.+.+...+.. ..-.++++||||..++ ..+..+++.+.
T Consensus 59 ~~----~~~~~~~~i~~~~~~~--~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~----~~~~~~~~~~~ 128 (161)
T cd01450 59 YK----SKDDLLKAVKNLKYLG--GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDD----GGDPKEAAAKL 128 (161)
T ss_pred CC----CHHHHHHHHHhcccCC--CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCC----CcchHHHHHHH
Confidence 11 3555555554432211 147999999999998877552 4567889999998887 23456666666
Q ss_pred cCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 202 SSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 202 S~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
.+..+-|+.||+|..+.+.|++|-+.
T Consensus 129 ~~~~v~v~~i~~g~~~~~~l~~la~~ 154 (161)
T cd01450 129 KDEGIKVFVVGVGPADEEELREIASC 154 (161)
T ss_pred HHCCCEEEEEeccccCHHHHHHHhCC
Confidence 66799999999999889999888653
No 24
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.22 E-value=2.8e-07 Score=62.67 Aligned_cols=33 Identities=39% Similarity=1.139 Sum_probs=27.6
Q ss_pred ccCcccCCCCe-ee-cCCCCCchhhhhcC----CCCCCC
Q 018272 314 CCICCEDEKDT-AF-ECGHMSCIKCALRM----PQCPFC 346 (358)
Q Consensus 314 C~IC~~~~~~~-v~-pCgH~~C~~C~~~~----~~CP~C 346 (358)
|+||++...++ ++ +|||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999998 45 99999999999976 679987
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.20 E-value=4.3e-07 Score=63.11 Aligned_cols=33 Identities=42% Similarity=0.900 Sum_probs=26.9
Q ss_pred ccCcccCCCCeee-cCCCCCchhhhhcC--------CCCCCC
Q 018272 314 CCICCEDEKDTAF-ECGHMSCIKCALRM--------PQCPFC 346 (358)
Q Consensus 314 C~IC~~~~~~~v~-pCgH~~C~~C~~~~--------~~CP~C 346 (358)
|+||++..++++. +|||.||..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999887 99999999999976 258887
No 26
>PHA02926 zinc finger-like protein; Provisional
Probab=98.17 E-value=5e-07 Score=83.49 Aligned_cols=46 Identities=28% Similarity=0.676 Sum_probs=36.6
Q ss_pred ccCCCccCcccCCC---------Ceee-cCCCCCchhhhhcCC----------CCCCCccccCCee
Q 018272 309 AEAQRCCICCEDEK---------DTAF-ECGHMSCIKCALRMP----------QCPFCREEITTRR 354 (358)
Q Consensus 309 ~~~~~C~IC~~~~~---------~~v~-pCgH~~C~~C~~~~~----------~CP~CR~~i~~~~ 354 (358)
+.+.+|.||+|... -.++ +|+|.||..|+.++. .||+||..+..++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 45689999998632 2456 999999999999872 2999999988754
No 27
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.16 E-value=2.4e-05 Score=68.40 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=90.9
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
+++.+.||.|.|=. . +..+.|-.++..+++.+.++ .+-+++|+..... .+++.+.+
T Consensus 1 ~~v~~vlD~S~SM~--------~------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~ 57 (155)
T cd01466 1 VDLVAVLDVSGSMA--------G------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMT 57 (155)
T ss_pred CcEEEEEECCCCCC--------c------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccC
Confidence 35778899887632 1 13344445555566666666 8999999986432 23333211
Q ss_pred CCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCC
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATGSQQEQETIRSIVDASSYP 205 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lP 205 (358)
+ .+-+. ..+.+..+...|-|++..-++.+.+..++.. ..-.++++||||..++ . .++..+.+.+
T Consensus 58 ~--~~~~~----~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~----~----~~~~~~~~~~ 123 (155)
T cd01466 58 A--KGKRS----AKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH----G----AVVLRADNAP 123 (155)
T ss_pred H--HHHHH----HHHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc----c----hhhhcccCCC
Confidence 1 11222 2333444667889999999999998876532 2346789999998765 2 3344566779
Q ss_pred eEEEEEeeC-CCCchhhhhccC
Q 018272 206 LSIVLVGVG-DGPWESIQKFHD 226 (358)
Q Consensus 206 lSIiiVGVG-~~~f~~m~~LD~ 226 (358)
+.|..||+| +.+...|++|=+
T Consensus 124 v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 124 IPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred ceEEEEecCCCCCHHHHHHHHh
Confidence 999999999 567777887754
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.6e-07 Score=90.64 Aligned_cols=42 Identities=38% Similarity=0.833 Sum_probs=38.3
Q ss_pred CCCccCcccCCCCeee-cCCCCCchhhhhcC---------CCCCCCccccCC
Q 018272 311 AQRCCICCEDEKDTAF-ECGHMSCIKCALRM---------PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~---------~~CP~CR~~i~~ 352 (358)
...|+||++.+..++. .|||.||..|+.++ .+||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6799999999999988 99999999999865 579999999987
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=1.2e-06 Score=88.18 Aligned_cols=50 Identities=32% Similarity=0.701 Sum_probs=43.0
Q ss_pred CCccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 303 PVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 303 ~~~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
+....+.....|+||.+...++++ +|||.||..|+..+ ..||+||..+..
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 444667788999999999999888 99999999999865 579999998865
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.09 E-value=1.6e-06 Score=60.54 Aligned_cols=36 Identities=39% Similarity=1.095 Sum_probs=30.2
Q ss_pred CccCcccCC---CCeee-cCCCCCchhhhhcCC----CCCCCcc
Q 018272 313 RCCICCEDE---KDTAF-ECGHMSCIKCALRMP----QCPFCRE 348 (358)
Q Consensus 313 ~C~IC~~~~---~~~v~-pCgH~~C~~C~~~~~----~CP~CR~ 348 (358)
.|.||++.. ....+ +|||.+|..|+.++. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999987 23445 999999999999986 8999985
No 31
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.04 E-value=6.1e-05 Score=66.81 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=76.8
Q ss_pred HHHHHHHhhcccccCCCceeEEeecCCCCCCC--CccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHH
Q 018272 87 QEVIYITGKELVLFDGDCIRCYGFGDDTTRDE--GVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVD 164 (358)
Q Consensus 87 q~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~--~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~ 164 (358)
.+++..+...+.. ..|.+-+|+|+...+... ..+...+-+. . +..+.++.+..+...|.|++.+.|+.+.+
T Consensus 23 k~a~~~l~~~l~~-~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~ 95 (174)
T cd01454 23 KKAAVLLAEALEA-CGVPHAILGFTTDAGGRERVRWIKIKDFDE---S---LHERARKRLAALSPGGNTRDGAAIRHAAE 95 (174)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEEecCCCCCccceEEEEecCccc---c---cchhHHHHHHccCCCCCCcHHHHHHHHHH
Confidence 3444444444444 233899999987632111 1111111010 1 01122333445556788999999999998
Q ss_pred HHHhcCCceEEEEEEeCCccCCcch------hHHHHHHHHHHhcCCCeEEEEEeeCCCCc
Q 018272 165 IVEESGGLHHVLVIITSGQVATGSQ------QEQETIRSIVDASSYPLSIVLVGVGDGPW 218 (358)
Q Consensus 165 ~~~~~~~~Y~VLlIiTDG~i~d~~~------~~~~t~~aIv~AS~lPlSIiiVGVG~~~f 218 (358)
...+....--++++||||.-++... ..++.++++.++-+..+.+..||||+...
T Consensus 96 ~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 96 RLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT 155 (174)
T ss_pred HHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence 8775444456788999998876210 13455566888888899999999998764
No 32
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.02 E-value=5.3e-05 Score=69.23 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=94.3
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCC--CC-cccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRD--EG-VFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~--~~-~f~~ 123 (358)
..++.+.||.|.|=.. . +....+..+.|..++..++..+.++ .+-++.|+...... .. +++.
T Consensus 20 ~~~vv~vlD~SgSM~~-------------~-~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~ 85 (206)
T cd01456 20 PPNVAIVLDNSGSMRE-------------V-DGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPK 85 (206)
T ss_pred CCcEEEEEeCCCCCcC-------------C-CCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccc
Confidence 4689999999877421 1 1112456666766777777778667 99999999864321 11 1111
Q ss_pred CCCCCCCCCHH-HHHHHHHhcCCcee-eccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHh
Q 018272 124 QENDSPCQGFE-HVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDA 201 (358)
Q Consensus 124 ~~~~~~~~g~~-gvl~~Y~~~l~~v~-l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~A 201 (358)
.+.-....+.. .-.+...+.+..++ ..|-|++..-|+.+.+..+ . ..-..+++||||.-++ ..+..+..+.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~-~-~~~~~iillTDG~~~~-~~~~~~~~~~~~~~ 162 (206)
T cd01456 86 GCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-P-GRVNVVVLITDGEDTC-GPDPCEVARELAKR 162 (206)
T ss_pred cccccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC-C-CCcceEEEEcCCCccC-CCCHHHHHHHHHHh
Confidence 11000111210 11233344455555 6889999999999988775 2 2335678889998765 11122333444432
Q ss_pred --cCCCeEEEEEeeCCC-Cchhhhhcc
Q 018272 202 --SSYPLSIVLVGVGDG-PWESIQKFH 225 (358)
Q Consensus 202 --S~lPlSIiiVGVG~~-~f~~m~~LD 225 (358)
..-++.|.+||+|.+ +...|+++=
T Consensus 163 ~~~~~~i~i~~igiG~~~~~~~l~~iA 189 (206)
T cd01456 163 RTPAPPIKVNVIDFGGDADRAELEAIA 189 (206)
T ss_pred cCCCCCceEEEEEecCcccHHHHHHHH
Confidence 124788999999975 455666653
No 33
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.99 E-value=1e-06 Score=61.32 Aligned_cols=35 Identities=34% Similarity=0.832 Sum_probs=28.2
Q ss_pred CccCcccCCC--C-eee-cCCCCCchhhhhcC----CCCCCCc
Q 018272 313 RCCICCEDEK--D-TAF-ECGHMSCIKCALRM----PQCPFCR 347 (358)
Q Consensus 313 ~C~IC~~~~~--~-~v~-pCgH~~C~~C~~~~----~~CP~CR 347 (358)
.|+||++... + ++. +|||.||..|+.++ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999763 2 333 99999999999987 6899998
No 34
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.99 E-value=3.9e-06 Score=62.29 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 312 QRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
..|+||.+...+++. +|||.+|+.|+.++ ..||+|++++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 579999999999888 99999999999976 579999999854
No 35
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.97 E-value=0.00015 Score=63.75 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=79.5
Q ss_pred HHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHH
Q 018272 87 QEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDI 165 (358)
Q Consensus 87 q~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~ 165 (358)
.+++..+..-+....++ .+.++.|+.+.. ..|+++. ....+.++++..+... ..|.|+...-|+.+.+.
T Consensus 22 k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~----~~~~~~l~~~l~~~~~---~~g~T~~~~aL~~a~~~ 91 (164)
T cd01482 22 RSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA----YTSKEDVLAAIKNLPY---KGGNTRTGKALTHVREK 91 (164)
T ss_pred HHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC----CCCHHHHHHHHHhCcC---CCCCChHHHHHHHHHHH
Confidence 34444444444333356 999999999742 2244431 2345566665554321 47889999999988765
Q ss_pred HHhc-----CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 166 VEES-----GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 166 ~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
..+. ...-.+++|||||.-+| +.++..+.+. +..+.|..||+|+.+-..|++|-+.
T Consensus 92 ~~~~~~~~r~~~~k~iillTDG~~~~---~~~~~a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~~ 152 (164)
T cd01482 92 NFTPDAGARPGVPKVVILITDGKSQD---DVELPARVLR---NLGVNVFAVGVKDADESELKMIASK 152 (164)
T ss_pred hcccccCCCCCCCEEEEEEcCCCCCc---hHHHHHHHHH---HCCCEEEEEecCcCCHHHHHHHhCC
Confidence 4221 12356888999998765 2334444443 4688999999999887777777654
No 36
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.96 E-value=1.7e-06 Score=85.51 Aligned_cols=42 Identities=43% Similarity=1.027 Sum_probs=38.9
Q ss_pred CCccCcccCCCCeee-cCCCCCchhhhhcC------CCCCCCccccCCe
Q 018272 312 QRCCICCEDEKDTAF-ECGHMSCIKCALRM------PQCPFCREEITTR 353 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~------~~CP~CR~~i~~~ 353 (358)
.+|+||-|+.+|+-+ ||||.+|..|+..| +.||.||..|...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 689999999999999 99999999999987 4699999999874
No 37
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.96 E-value=3.8e-06 Score=57.02 Aligned_cols=38 Identities=37% Similarity=0.987 Sum_probs=30.9
Q ss_pred CccCcccCCCCee-e-cCCCCCchhhhhcC-----CCCCCCcccc
Q 018272 313 RCCICCEDEKDTA-F-ECGHMSCIKCALRM-----PQCPFCREEI 350 (358)
Q Consensus 313 ~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~-----~~CP~CR~~i 350 (358)
.|+||++...+.+ + +|||.+|..|...+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999885544 4 69999999999854 5699999864
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.94 E-value=1.4e-06 Score=84.57 Aligned_cols=51 Identities=31% Similarity=0.644 Sum_probs=44.5
Q ss_pred CCCccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 302 GPVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 302 ~~~~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
.|....+.+...|-||.|.++.+++ ||||.||..|+... +.||.|+.+++.
T Consensus 14 ipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 14 IPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred CchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 4445567788999999999999998 99999999999976 789999998875
No 39
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.93 E-value=0.00012 Score=62.98 Aligned_cols=146 Identities=17% Similarity=0.209 Sum_probs=96.6
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~~~~ 129 (358)
++++.+|-|.|=.+. ....+...++..++..++..+..+.|.++.|+.... ..+++.
T Consensus 1 dvv~v~D~SgSM~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~f~~~~~---~~~~~t----- 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGY---------------DGNRTRIDQAKDALNELLANLPGDRVGLVSFSDSSR---TLSPLT----- 57 (172)
T ss_dssp EEEEEEE-SGGGGTT---------------TSSS-HHHHHHHHHHHHHHHHTTSEEEEEEESTSCE---EEEEEE-----
T ss_pred CEEEEEECCcccCCC---------------CCCCcHHHHHHHHHHHHHHHCCCCEEEEEEeccccc---cccccc-----
Confidence 468889998885421 112578888999999999988644999999998531 123332
Q ss_pred CCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEE
Q 018272 130 CQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIV 209 (358)
Q Consensus 130 ~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIi 209 (358)
.+.+.+.+...+..+.....|.|++...|+.+.+........=-.+++||||.-+. ...+++..+.+..+.|.
T Consensus 58 -~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~------~~~~~~~~~~~~~i~i~ 130 (172)
T PF13519_consen 58 -SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS------SDIEAAKALKQQGITIY 130 (172)
T ss_dssp -SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC------HHHHHHHHHHCTTEEEE
T ss_pred -ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc------chhHHHHHHHHcCCeEE
Confidence 36777777776666666668899999999999999876643345557779997654 33346667778899999
Q ss_pred EEeeCCCCc--hhhhhcc
Q 018272 210 LVGVGDGPW--ESIQKFH 225 (358)
Q Consensus 210 iVGVG~~~f--~~m~~LD 225 (358)
+||+|...- ..|+.|-
T Consensus 131 ~v~~~~~~~~~~~l~~la 148 (172)
T PF13519_consen 131 TVGIGSDSDANEFLQRLA 148 (172)
T ss_dssp EEEES-TT-EHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHH
Confidence 999998765 3555554
No 40
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.90 E-value=0.00031 Score=62.09 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=82.8
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
.+++.+.||.|.|=.. . ++ ...+..+.|...+...+.....|.+-++.|+..... ++++.
T Consensus 2 ~~~vv~vlD~S~SM~~--~--------~~----~~~~r~~~a~~~~~~~~~~~~~~~v~lv~f~~~~~~---~~~~~--- 61 (180)
T cd01467 2 GRDIMIALDVSGSMLA--Q--------DF----VKPSRLEAAKEVLSDFIDRRENDRIGLVVFAGAAFT---QAPLT--- 61 (180)
T ss_pred CceEEEEEECCccccc--c--------cC----CCCCHHHHHHHHHHHHHHhCCCCeEEEEEEcCCeee---ccCCC---
Confidence 3688999999988541 1 11 012444455555656666655458999999886321 22222
Q ss_pred CCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeE
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLS 207 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlS 207 (358)
.+...+.+. -+.+......|.|+...-|+.+.+...+....-.++++||||.-++-..+..+. ...+....+.
T Consensus 62 ---~~~~~~~~~-l~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~---~~~~~~~gi~ 134 (180)
T cd01467 62 ---LDRESLKEL-LEDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATA---AELAKNKGVR 134 (180)
T ss_pred ---ccHHHHHHH-HHHhhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHH---HHHHHHCCCE
Confidence 122222222 122222335788999988988888876544445788999999765410012222 2334456788
Q ss_pred EEEEeeCC
Q 018272 208 IVLVGVGD 215 (358)
Q Consensus 208 IiiVGVG~ 215 (358)
|..||+|.
T Consensus 135 i~~i~ig~ 142 (180)
T cd01467 135 IYTIGVGK 142 (180)
T ss_pred EEEEEecC
Confidence 88888887
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=2.9e-06 Score=90.02 Aligned_cols=46 Identities=30% Similarity=0.767 Sum_probs=41.1
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
..+....|++|.++++++++ .|||.||..|.... .+||.|..+|..
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 34566999999999999999 99999999999864 789999999876
No 42
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.86 E-value=4e-06 Score=57.25 Aligned_cols=33 Identities=39% Similarity=1.015 Sum_probs=29.2
Q ss_pred ccCcccCCCCee-e-cCCCCCchhhhhcC------CCCCCC
Q 018272 314 CCICCEDEKDTA-F-ECGHMSCIKCALRM------PQCPFC 346 (358)
Q Consensus 314 C~IC~~~~~~~v-~-pCgH~~C~~C~~~~------~~CP~C 346 (358)
|+||++...+.+ + +|||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999987 5 99999999999876 469987
No 43
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=7.1e-06 Score=76.00 Aligned_cols=46 Identities=30% Similarity=0.676 Sum_probs=42.6
Q ss_pred CCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018272 312 QRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 357 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f 357 (358)
..|..|.++...+++ ||.|+ +|..|......||+|+.+....+++|
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred ccceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 349999999999988 99999 99999998899999999999999887
No 44
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.85 E-value=0.00023 Score=75.61 Aligned_cols=129 Identities=19% Similarity=0.109 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHH
Q 018272 85 PYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAV 163 (358)
Q Consensus 85 ~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~ 163 (358)
..++|-.++..+|....++ .|-++.|+....... +.. ...+ ++-++...+.+..++..|-|++...|+.+.
T Consensus 288 ~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~---~~~----~~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~ 359 (596)
T TIGR03788 288 SIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLF---PVP----VPAT-AHNLARARQFVAGLQADGGTEMAGALSAAL 359 (596)
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEec---ccc----ccCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Confidence 3556777777788888877 999999998754221 110 0011 122233344455566789999999999998
Q ss_pred HHHHhc-CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCC-CchhhhhccC
Q 018272 164 DIVEES-GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDG-PWESIQKFHD 226 (358)
Q Consensus 164 ~~~~~~-~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~-~f~~m~~LD~ 226 (358)
+..... ...--.+++||||.+.| ..++.+.+..+. -..-|..||||++ +...|+.|-.
T Consensus 360 ~~~~~~~~~~~~~iillTDG~~~~----~~~~~~~~~~~~-~~~ri~tvGiG~~~n~~lL~~lA~ 419 (596)
T TIGR03788 360 RDDGPESSGALRQVVFLTDGAVGN----EDALFQLIRTKL-GDSRLFTVGIGSAPNSYFMRKAAQ 419 (596)
T ss_pred HhhcccCCCceeEEEEEeCCCCCC----HHHHHHHHHHhc-CCceEEEEEeCCCcCHHHHHHHHH
Confidence 763222 12234467789999988 778888776553 2456778999986 6777777653
No 45
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.82 E-value=0.00052 Score=59.75 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=88.1
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCC---C-ceeEEeecCCCCCCCCccccC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSFQ 124 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~---d-~ip~~GFGa~~~~~~~~f~~~ 124 (358)
+++.+.+|-|.|-. ..|+++...+..++..+.. . .+-+.+|+.... ..-.|+++
T Consensus 1 ldv~~llD~S~Sm~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~ 58 (163)
T cd01476 1 LDLLFVLDSSGSVR---------------------GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLP 58 (163)
T ss_pred CCEEEEEeCCcchh---------------------hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCC
Confidence 36778888876632 0134445555555666553 4 999999998522 11124443
Q ss_pred CCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccCCcchhHHHHHHHHHH
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES----GGLHHVLVIITSGQVATGSQQEQETIRSIVD 200 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~ 200 (358)
.. ...+.++++-.. +. ...|.|+....|+.+.+...+. .....+++++|||..++ +..+..+.+.+
T Consensus 59 ~~----~~~~~l~~~i~~-l~--~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~---~~~~~~~~l~~ 128 (163)
T cd01476 59 KH----NDGEELLEKVDN-LR--FIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD---DPEKQARILRA 128 (163)
T ss_pred CC----CCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC---chHHHHHHHhh
Confidence 21 234445444433 22 1367899999999998887421 12237889999998765 24455566655
Q ss_pred hcCCCeEEEEEeeCCC---Cchhhhhcc
Q 018272 201 ASSYPLSIVLVGVGDG---PWESIQKFH 225 (358)
Q Consensus 201 AS~lPlSIiiVGVG~~---~f~~m~~LD 225 (358)
..-+.|+.||+|+. +...|+.+-
T Consensus 129 --~~~v~v~~vg~g~~~~~~~~~L~~ia 154 (163)
T cd01476 129 --VPNIETFAVGTGDPGTVDTEELHSIT 154 (163)
T ss_pred --cCCCEEEEEECCCccccCHHHHHHHh
Confidence 46688999999986 455555553
No 46
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.82 E-value=5.1e-06 Score=79.34 Aligned_cols=52 Identities=33% Similarity=0.601 Sum_probs=44.1
Q ss_pred CCCCccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 301 MGPVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 301 ~~~~~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
..|+...+.....|.||-+..+.++. +|||.||..|+.+. ..||+||.+...
T Consensus 15 ~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 15 KIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 34555566778899999999999999 99999999999986 679999987654
No 47
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=4.7e-06 Score=77.44 Aligned_cols=43 Identities=35% Similarity=0.760 Sum_probs=37.5
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcCC----CCCCCcc
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRMP----QCPFCRE 348 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~~----~CP~CR~ 348 (358)
....+...|+||++..+++.+ +|||.||+.|+..+. .||.||.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 455678999999999999876 999999999999874 7999994
No 48
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=6.8e-06 Score=77.65 Aligned_cols=44 Identities=30% Similarity=0.856 Sum_probs=37.6
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhc-C-----CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALR-M-----PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~-~-----~~CP~CR~~i~~ 352 (358)
..+..|.||++..-+++. +|||.||..|+.. + ..||+||+....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 346899999999999887 9999999999987 3 359999997654
No 49
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.77 E-value=0.00038 Score=63.09 Aligned_cols=155 Identities=14% Similarity=0.200 Sum_probs=89.3
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
+++.+.||-|.|=+ +. ..+.-.+++..+...|..+..+ .+-++.|+.... .+|++..
T Consensus 1 ~di~~vlD~SgSM~--------~~---------~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~-- 58 (198)
T cd01470 1 LNIYIALDASDSIG--------EE---------DFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRD-- 58 (198)
T ss_pred CcEEEEEECCCCcc--------HH---------HHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEeccc--
Confidence 46788899887632 10 1122334555554444445445 999999998643 1344431
Q ss_pred CCCCCHHHHHHHHHhcCCcee-eccCCChHHHHHHHHHHHHhc----C----CceEEEEEEeCCccCCcchhHHHHHHHH
Q 018272 128 SPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEES----G----GLHHVLVIITSGQVATGSQQEQETIRSI 198 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~-l~gpt~fapvI~~a~~~~~~~----~----~~Y~VLlIiTDG~i~d~~~~~~~t~~aI 198 (358)
..-...+.++++-...-.... ..|-|++..-|+.+.+..... . ..-.++++||||+-++- .+..+..+.|
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g-~~~~~~~~~~ 137 (198)
T cd01470 59 FNSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG-GSPLPTVDKI 137 (198)
T ss_pred CCCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC-CChhHHHHHH
Confidence 111234455554433322221 246799999998887654211 0 12378899999987641 1133444555
Q ss_pred HHh----------cCCCeEEEEEeeCCC-CchhhhhccC
Q 018272 199 VDA----------SSYPLSIVLVGVGDG-PWESIQKFHD 226 (358)
Q Consensus 199 v~A----------S~lPlSIiiVGVG~~-~f~~m~~LD~ 226 (358)
.++ ....+.|..||||+. +.+.|+++=.
T Consensus 138 ~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 138 KNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 443 234689999999964 7888888855
No 50
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.73 E-value=0.00043 Score=60.59 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=75.8
Q ss_pred HHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceee-ccCCChHHHHHHHHHHH
Q 018272 89 VIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQY-FGPTSYAPMVEAAVDIV 166 (358)
Q Consensus 89 aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l-~gpt~fapvI~~a~~~~ 166 (358)
++..+..-|.....+ .+-++-|+..... +++++. ....+.+.+.-.+ +.. .|.|+....++.|.+..
T Consensus 24 ~~~~~~~~l~~~~~~~~~giv~Fs~~~~~---~~~~~~----~~~~~~~~~~l~~----l~~~~g~T~~~~al~~a~~~l 92 (164)
T cd01472 24 FVKRVVERLDIGPDGVRVGVVQYSDDPRT---EFYLNT----YRSKDDVLEAVKN----LRYIGGGTNTGKALKYVRENL 92 (164)
T ss_pred HHHHHHhhcccCCCCeEEEEEEEcCceeE---EEecCC----CCCHHHHHHHHHh----CcCCCCCchHHHHHHHHHHHh
Confidence 444443334333345 8999999976432 234431 1234444444333 332 78899999999998876
Q ss_pred Hhc-----CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccC
Q 018272 167 EES-----GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHD 226 (358)
Q Consensus 167 ~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~ 226 (358)
... ...-.++++||||.-++ +..++..+..+..+.|..||+|+.+.+.|+.+=+
T Consensus 93 ~~~~~~~~~~~~~~iiliTDG~~~~------~~~~~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 93 FTEASGSREGVPKVLVVITDGKSQD------DVEEPAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred CCcccCCCCCCCEEEEEEcCCCCCc------hHHHHHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 541 22346778889997654 2233333444578899999999988888888754
No 51
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.72 E-value=0.001 Score=60.61 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=93.3
Q ss_pred HHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHH
Q 018272 89 VIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVD 164 (358)
Q Consensus 89 aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~ 164 (358)
++..+-.+++.|+ .+ .+.+.=|+.... ..++|+.. .-..-+.++++-++..+....+|-|+....|+.+.+
T Consensus 22 ~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~--~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~ 96 (192)
T cd01473 22 VIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE--ERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLK 96 (192)
T ss_pred HHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc--cccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3444555555554 34 899999998642 22444321 112345566655554433334688999999999887
Q ss_pred HHHhcC----CceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCCC-CCcccceeEee
Q 018272 165 IVEESG----GLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDKI-PALQFDNFHFV 239 (358)
Q Consensus 165 ~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~~-~~r~rDnvqFV 239 (358)
...+.. ..--|+++||||.-++. +...+.++...+-+.-+.|..||||..+-..++.+=+.- ......+|-..
T Consensus 97 ~~~~~~~~r~~~~kv~IllTDG~s~~~--~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~ 174 (192)
T cd01473 97 NYTKHGNRRKDAPKVTMLFTDGNDTSA--SKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKT 174 (192)
T ss_pred HhccCCCCcccCCeEEEEEecCCCCCc--chhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEec
Confidence 764321 12678999999988761 123466777777788999999999998877766665431 11122344445
Q ss_pred eccccc
Q 018272 240 NFTAIM 245 (358)
Q Consensus 240 ~f~~~~ 245 (358)
+|+++.
T Consensus 175 ~f~~l~ 180 (192)
T cd01473 175 EWNNLN 180 (192)
T ss_pred chhhHH
Confidence 566553
No 52
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.71 E-value=0.00035 Score=60.52 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=87.7
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~ 128 (358)
++++-||.+.|.. | . . +.+..++-.+++...+. .|-++.||......... +.+ .
T Consensus 2 ~vvilvD~S~Sm~--g---------------~-~---~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~--~~~--~ 56 (155)
T PF13768_consen 2 DVVILVDTSGSMS--G---------------E-K---ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPG--LVP--A 56 (155)
T ss_pred eEEEEEeCCCCCC--C---------------c-H---HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchh--HHH--H
Confidence 5788899998864 1 0 1 22333444455666667 99999999964322110 000 0
Q ss_pred CCCCHHHHHHHHHhcCCceee-ccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeE
Q 018272 129 PCQGFEHVLECYRKNVPNVQY-FGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLS 207 (358)
Q Consensus 129 ~~~g~~gvl~~Y~~~l~~v~l-~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlS 207 (358)
.-.+.+.+ .+.+..+.. .|.|++.+.++.|.+..... ..-..+++||||..++ ..+++.+.+..+. -.+-
T Consensus 57 ~~~~~~~a----~~~I~~~~~~~G~t~l~~aL~~a~~~~~~~-~~~~~IilltDG~~~~---~~~~i~~~v~~~~-~~~~ 127 (155)
T PF13768_consen 57 TEENRQEA----LQWIKSLEANSGGTDLLAALRAALALLQRP-GCVRAIILLTDGQPVS---GEEEILDLVRRAR-GHIR 127 (155)
T ss_pred hHHHHHHH----HHHHHHhcccCCCccHHHHHHHHHHhcccC-CCccEEEEEEeccCCC---CHHHHHHHHHhcC-CCce
Confidence 00133333 333444666 89999999999988765222 3345567789999644 1567777776543 5588
Q ss_pred EEEEeeCC-CCchhhhhcc
Q 018272 208 IVLVGVGD-GPWESIQKFH 225 (358)
Q Consensus 208 IiiVGVG~-~~f~~m~~LD 225 (358)
|..+|+|. .+...|++|=
T Consensus 128 i~~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 128 IFTFGIGSDADADFLRELA 146 (155)
T ss_pred EEEEEECChhHHHHHHHHH
Confidence 88899997 5677777664
No 53
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.71 E-value=0.00052 Score=59.71 Aligned_cols=148 Identities=15% Similarity=0.225 Sum_probs=88.4
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~ 128 (358)
++++.||-|.|-+. . ..+...+++..+..-+...+.. .+-+.-||.... ..|+|+..
T Consensus 1 DivflvD~S~sm~~-----------~------~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~-- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG-----------D------NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY-- 58 (178)
T ss_dssp EEEEEEE-STTSCH-----------H------HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH--
T ss_pred CEEEEEeCCCCCch-----------H------HHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc--
Confidence 46788888877541 0 0123444444444444455666 999999998754 23455321
Q ss_pred CCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcC
Q 018272 129 PCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQETIRSIVDASS 203 (358)
Q Consensus 129 ~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~ 203 (358)
...+.+++.- .......+|.|++...|++|.+..... .....++++||||..++. +...+....+.+.
T Consensus 59 --~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~-~~~~~~~~~~~~~-- 131 (178)
T PF00092_consen 59 --QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDS-DSPSEEAANLKKS-- 131 (178)
T ss_dssp --SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSH-SGHHHHHHHHHHH--
T ss_pred --cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCC-cchHHHHHHHHHh--
Confidence 2344554433 233445679999999999999986533 356899999999999982 1122333333322
Q ss_pred CCeEEEEEeeCCCCchhhhhccC
Q 018272 204 YPLSIVLVGVGDGPWESIQKFHD 226 (358)
Q Consensus 204 lPlSIiiVGVG~~~f~~m~~LD~ 226 (358)
.-+.++.||++..+-..|+.|-+
T Consensus 132 ~~i~~~~ig~~~~~~~~l~~la~ 154 (178)
T PF00092_consen 132 NGIKVIAIGIDNADNEELRELAS 154 (178)
T ss_dssp CTEEEEEEEESCCHHHHHHHHSH
T ss_pred cCcEEEEEecCcCCHHHHHHHhC
Confidence 56666666665567777777654
No 54
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.66 E-value=2.9e-05 Score=50.70 Aligned_cols=33 Identities=42% Similarity=1.053 Sum_probs=28.5
Q ss_pred ccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCC
Q 018272 314 CCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFC 346 (358)
Q Consensus 314 C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~C 346 (358)
|+||++...++++ +|||.+|..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899999888777 99999999999854 569987
No 55
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.65 E-value=2.1e-05 Score=59.27 Aligned_cols=45 Identities=29% Similarity=0.729 Sum_probs=27.0
Q ss_pred cccCCCccCcccCCCCee-e-cCCCCCchhhhhcC--CCCCCCccccCC
Q 018272 308 VAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM--PQCPFCREEITT 352 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~--~~CP~CR~~i~~ 352 (358)
+++...|.+|.+..+.++ + .|.|.||+.|.... ..||+|+.|-..
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~ 52 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWI 52 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHHH
Confidence 456789999999999987 4 99999999999987 779999998743
No 56
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.64 E-value=0.00066 Score=60.94 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=88.0
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC-CC-ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD-GD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD-~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.+++.+.||-|.|=+ ++ + .+++..+-.++..|. ++ ++-++.|+.... .+|+|+.
T Consensus 4 ~~Dvv~llD~SgSm~--~~---------~----------~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~---~~~~l~~ 59 (185)
T cd01474 4 HFDLYFVLDKSGSVA--AN---------W----------IEIYDFVEQLVDRFNSPGLRFSFITFSTRAT---KILPLTD 59 (185)
T ss_pred ceeEEEEEeCcCchh--hh---------H----------HHHHHHHHHHHHHcCCCCcEEEEEEecCCce---EEEeccc
Confidence 478899999887732 10 1 112222333334443 34 999999997632 2456542
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHh--cCCc--eEEEEEEeCCccCCcchhHHHHHHHHHHh
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE--SGGL--HHVLVIITSGQVATGSQQEQETIRSIVDA 201 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~--~~~~--Y~VLlIiTDG~i~d~~~~~~~t~~aIv~A 201 (358)
.. +.+.++.. .++.+...|.|+...-|+.|.+...+ .+.. -.++++||||.-++. ....+.++...+
T Consensus 60 ~~------~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~--~~~~~~~~a~~l 130 (185)
T cd01474 60 DS------SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLN--GHKYPEHEAKLS 130 (185)
T ss_pred cH------HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCC--CCcchHHHHHHH
Confidence 11 12222221 13445557899999999999876532 1111 177889999988430 022344444445
Q ss_pred cCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 202 SSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 202 S~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
-+..+-|..||||+.+...|+.+=+.
T Consensus 131 ~~~gv~i~~vgv~~~~~~~L~~iA~~ 156 (185)
T cd01474 131 RKLGAIVYCVGVTDFLKSQLINIADS 156 (185)
T ss_pred HHcCCEEEEEeechhhHHHHHHHhCC
Confidence 55678899999988888888877653
No 57
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.56 E-value=1.9e-05 Score=55.20 Aligned_cols=26 Identities=35% Similarity=0.881 Sum_probs=16.9
Q ss_pred ccCcccCCCC----ee-ecCCCCCchhhhhcC
Q 018272 314 CCICCEDEKD----TA-FECGHMSCIKCALRM 340 (358)
Q Consensus 314 C~IC~~~~~~----~v-~pCgH~~C~~C~~~~ 340 (358)
|+||.+ ..+ ++ ++|||.+|+.|++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 655 55 499999999999987
No 58
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.46 E-value=0.0017 Score=68.23 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=97.6
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCC---C-ceeEEeecCCCCCCCCccc
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFS 122 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~---d-~ip~~GFGa~~~~~~~~f~ 122 (358)
.++.+.+.||-|+|=+ + .|-.++|...+..++..++. . .+-+..|+.... .+|+
T Consensus 41 ~~lDIvFLLD~SgSMg-------------~------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfp 98 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIG-------------Y------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIR 98 (576)
T ss_pred CCceEEEEEeCCCccC-------------C------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEe
Confidence 3688899999877643 1 13345677777777777743 2 555578887632 2345
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccCCcchhHHHHHHHHH
Q 018272 123 FQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---GLHHVLVIITSGQVATGSQQEQETIRSIV 199 (358)
Q Consensus 123 ~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv 199 (358)
+... .-...+.++.+-.+....+..+|-|++...|+.+.+...+.. ..--++++||||.-++ ..++++++.
T Consensus 99 L~s~--~s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns----~~dvleaAq 172 (576)
T PTZ00441 99 LGSG--ASKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS----KYRALEESR 172 (576)
T ss_pred cCCC--ccccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC----cccHHHHHH
Confidence 5321 112345666666666666667899999999999887765431 1236888999998665 345666666
Q ss_pred HhcCCCeEEEEEeeCCC-Cchhhhhc
Q 018272 200 DASSYPLSIVLVGVGDG-PWESIQKF 224 (358)
Q Consensus 200 ~AS~lPlSIiiVGVG~~-~f~~m~~L 224 (358)
...+..+-|..||||.+ +-..|+.+
T Consensus 173 ~LR~~GVeI~vIGVG~g~n~e~LrlI 198 (576)
T PTZ00441 173 KLKDRNVKLAVIGIGQGINHQFNRLL 198 (576)
T ss_pred HHHHCCCEEEEEEeCCCcCHHHHHHH
Confidence 66677899999999974 33334444
No 59
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.46 E-value=0.0036 Score=53.97 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=76.6
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~~~~ 129 (358)
.+.+.||.|.|=. +.-+ -....++..++..+.. ..+.+-++.|+.... ...+. .
T Consensus 2 ~v~illD~SgSM~--------~~k~---------~~a~~~~~~l~~~~~~-~~~~v~li~F~~~~~----~~~~~----~ 55 (152)
T cd01462 2 PVILLVDQSGSMY--------GAPE---------EVAKAVALALLRIALA-ENRDTYLILFDSEFQ----TKIVD----K 55 (152)
T ss_pred CEEEEEECCCCCC--------CCHH---------HHHHHHHHHHHHHHHH-cCCcEEEEEeCCCce----EEecC----C
Confidence 3678899987732 1001 1223444455554444 223788999998711 11111 1
Q ss_pred CCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCc-cCCcchhHHHHHHHHHHhcCCCeEE
Q 018272 130 CQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQ-VATGSQQEQETIRSIVDASSYPLSI 208 (358)
Q Consensus 130 ~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~-i~d~~~~~~~t~~aIv~AS~lPlSI 208 (358)
-..+..+++... .+...|.|++.+.++.+.+..++....=.+++|||||. -.+ ..++.++...+....+-|
T Consensus 56 ~~~~~~~~~~l~----~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~----~~~~~~~~~~~~~~~~~v 127 (152)
T cd01462 56 TDDLEEPVEFLS----GVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV----SDELLREVELKRSRVARF 127 (152)
T ss_pred cccHHHHHHHHh----cCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----CHHHHHHHHHHHhcCcEE
Confidence 124555555433 34567999999999999988776433335778999994 333 234433333333445667
Q ss_pred EEEeeCCC
Q 018272 209 VLVGVGDG 216 (358)
Q Consensus 209 iiVGVG~~ 216 (358)
..||||++
T Consensus 128 ~~~~~g~~ 135 (152)
T cd01462 128 VALALGDH 135 (152)
T ss_pred EEEEecCC
Confidence 77777764
No 60
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.44 E-value=0.0016 Score=58.86 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=91.7
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccccc---CCC-ceeEEeecCCCCCCCCccccC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVFSFQ 124 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~y---D~d-~ip~~GFGa~~~~~~~~f~~~ 124 (358)
.++++++|-|.|=.. . +..+|..+.|-..+...++.+ .+. ++-++.|++...+. +.+++
T Consensus 4 r~ivi~lD~S~SM~a-------------~--D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT 66 (183)
T cd01453 4 RHLIIVIDCSRSMEE-------------Q--DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLT 66 (183)
T ss_pred eEEEEEEECcHHHhc-------------C--CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCC
Confidence 378999999977320 0 123789999999999999876 344 89999996542211 22333
Q ss_pred CCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccCCcchhHHHHHHHHHHhc
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQVATGSQQEQETIRSIVDAS 202 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS 202 (358)
. ..+.+++.-+.. +...|-|++...|+.|.+..++... +=.|+|++|||.-.| ..+..+++..+.
T Consensus 67 ~------D~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~----~~~~~~~~~~l~ 133 (183)
T cd01453 67 G------NPRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD----PGNIYETIDKLK 133 (183)
T ss_pred C------CHHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC----hhhHHHHHHHHH
Confidence 2 223333333322 2346779999999999888765321 235788899987665 233334455555
Q ss_pred CCCeEEEEEeeCCCCchhhhhc
Q 018272 203 SYPLSIVLVGVGDGPWESIQKF 224 (358)
Q Consensus 203 ~lPlSIiiVGVG~~~f~~m~~L 224 (358)
+..+-|-+||+|.+ ...|+++
T Consensus 134 ~~~I~v~~IgiG~~-~~~L~~i 154 (183)
T cd01453 134 KENIRVSVIGLSAE-MHICKEI 154 (183)
T ss_pred HcCcEEEEEEechH-HHHHHHH
Confidence 66788888999853 3344444
No 61
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.44 E-value=0.0021 Score=59.57 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=88.4
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccccC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQ 124 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~~ 124 (358)
+.+.+.||-|.|=+ ...++++...+..++..++ +. .+-+..|+.... .+|+|+
T Consensus 3 ~DlvfllD~S~Sm~--------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~ 59 (224)
T cd01475 3 TDLVFLIDSSRSVR--------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLG 59 (224)
T ss_pred ccEEEEEeCCCCCC--------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccc
Confidence 56778888765521 1346677777777777774 34 899999999743 245664
Q ss_pred CCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHH----hc-CCc---eEEEEEEeCCccCCcchhHHHHHH
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVE----ES-GGL---HHVLVIITSGQVATGSQQEQETIR 196 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~----~~-~~~---Y~VLlIiTDG~i~d~~~~~~~t~~ 196 (358)
.. ...+.+.++-... +. +.|.|+....|+.+.+.+- .. ... -.|+++||||.-.| +..+..+
T Consensus 60 ~~----~~~~~l~~~i~~i-~~--~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~---~~~~~a~ 129 (224)
T cd01475 60 RF----KSKADLKRAVRRM-EY--LETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD---DVSEVAA 129 (224)
T ss_pred cc----CCHHHHHHHHHhC-cC--CCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc---cHHHHHH
Confidence 21 2344555544432 22 3566777777777766521 11 111 37889999998766 2333333
Q ss_pred HHHHhcCCCeEEEEEeeCCCCchhhhhccC
Q 018272 197 SIVDASSYPLSIVLVGVGDGPWESIQKFHD 226 (358)
Q Consensus 197 aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~ 226 (358)
++-..-+.|..||||+.+...|+++=.
T Consensus 130 ---~lk~~gv~i~~VgvG~~~~~~L~~ias 156 (224)
T cd01475 130 ---KARALGIEMFAVGVGRADEEELREIAS 156 (224)
T ss_pred ---HHHHCCcEEEEEeCCcCCHHHHHHHhC
Confidence 344567899999999987777766654
No 62
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=5.6e-05 Score=74.07 Aligned_cols=45 Identities=29% Similarity=0.748 Sum_probs=40.1
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
.++.+|+||+..+.+++| ||+|..|..|+.+. +.|-.|+..+..+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 456899999999999999 99999999999975 7899999988754
No 63
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.35 E-value=0.0048 Score=55.51 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=73.0
Q ss_pred ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCcee-eccCCChHHHHHHHHHHHHhc--CCceEEEEEEe
Q 018272 104 CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEES--GGLHHVLVIIT 180 (358)
Q Consensus 104 ~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~-l~gpt~fapvI~~a~~~~~~~--~~~Y~VLlIiT 180 (358)
.+-++.|+.... ..+++... -...+.+.++ +.+++ ..|.|+...-|+.|.+..... ...-.++++||
T Consensus 48 rvglv~fs~~~~---~~~~l~~~---~~~~~~l~~~----i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillT 117 (186)
T cd01480 48 RVGVVQYSDQQE---VEAGFLRD---IRNYTSLKEA----VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVIT 117 (186)
T ss_pred EEEEEEecCCce---eeEecccc---cCCHHHHHHH----HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEe
Confidence 899999997643 23444321 1234444333 33343 478999999999998887641 23346778889
Q ss_pred CCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 181 SGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 181 DG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
||.-++. +.....+++.++.+..+.|..||||..+-..|+++=+.
T Consensus 118 DG~~~~~--~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~ 162 (186)
T cd01480 118 DGHSDGS--PDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACD 162 (186)
T ss_pred CCCcCCC--cchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcC
Confidence 9976430 02234556666778899999999999776667666543
No 64
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.32 E-value=0.0033 Score=60.49 Aligned_cols=139 Identities=18% Similarity=0.304 Sum_probs=92.7
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
+.++++|||=|.|=.. . .-.++..+ |+..|.+.+..-..+++-+.+||.... .+.+|+ +
T Consensus 60 ~~qIvlaID~S~SM~~-------~--------~~~~~ale-ak~lIs~al~~Le~g~vgVv~Fg~~~~---~v~Plt--~ 118 (266)
T cd01460 60 DYQILIAIDDSKSMSE-------N--------NSKKLALE-SLCLVSKALTLLEVGQLGVCSFGEDVQ---ILHPFD--E 118 (266)
T ss_pred CceEEEEEecchhccc-------c--------cccccHHH-HHHHHHHHHHhCcCCcEEEEEeCCCce---EeCCCC--C
Confidence 5789999999987431 0 11256665 899999999999888999999999632 122333 1
Q ss_pred CCCCCHHHHHHHHHhcCCceeec-cCCChHHHHHHHHHHHHhcC----C--ceEEEEEEeCCccCCcchhHHHHHHHHHH
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYF-GPTSYAPMVEAAVDIVEESG----G--LHHVLVIITSGQVATGSQQEQETIRSIVD 200 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~-gpt~fapvI~~a~~~~~~~~----~--~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~ 200 (358)
+ +.. ++.-+++....+. +-|+.+..|+.+++..++.. . .--++||||||.-.+ +......++.+
T Consensus 119 d----~~~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~---~e~~~~~~~r~ 189 (266)
T cd01460 119 Q----FSS--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEF---SEGAQKVRLRE 189 (266)
T ss_pred C----chh--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCccc---CccHHHHHHHH
Confidence 1 111 2223333322233 45899999999998866431 1 137899999998443 12333455788
Q ss_pred hcCCCeEEEEEeeCCC
Q 018272 201 ASSYPLSIVLVGVGDG 216 (358)
Q Consensus 201 AS~lPlSIiiVGVG~~ 216 (358)
|....+.+++|||-+.
T Consensus 190 a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 190 AREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHcCCeEEEEEEcCC
Confidence 8888999999999875
No 65
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.28 E-value=0.0039 Score=57.04 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=95.0
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCC--------C--ceeEEeecCCCCCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG--------D--CIRCYGFGDDTTRD 117 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~--------d--~ip~~GFGa~~~~~ 117 (358)
.+.+.+.||-+.|=+ .+.++++..-+..++..++. + ++-+.-|+....
T Consensus 19 ~~DivfvlD~S~Sm~--------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~-- 76 (193)
T cd01477 19 WLDIVFVVDNSKGMT--------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT-- 76 (193)
T ss_pred eeeEEEEEeCCCCcc--------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE--
Confidence 467888888776632 12366676666666665553 2 888899988632
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccCCcchhHH
Q 018272 118 EGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQ 192 (358)
Q Consensus 118 ~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~ 192 (358)
-.|+|+ .....++++++....++.+..+|-|+...-|+.|.+..... ...--|+++||||.-.+. ..
T Consensus 77 -~~~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~---~~ 148 (193)
T cd01477 77 -VVADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG---SN 148 (193)
T ss_pred -EEEecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC---CC
Confidence 125553 12356788887777666665567899999999998876532 123577889999754320 01
Q ss_pred HHHHHHHHhcCCCeEEEEEeeCCC-Cchhhhhcc
Q 018272 193 ETIRSIVDASSYPLSIVLVGVGDG-PWESIQKFH 225 (358)
Q Consensus 193 ~t~~aIv~AS~lPlSIiiVGVG~~-~f~~m~~LD 225 (358)
...++..++.+..+-|.-||||.+ +=..|++|.
T Consensus 149 ~~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L~ 182 (193)
T cd01477 149 DPRPIAARLKSTGIAIITVAFTQDESSNLLDKLG 182 (193)
T ss_pred CHHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHHH
Confidence 233444445577999999999985 223355554
No 66
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.24 E-value=0.0036 Score=55.91 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=79.6
Q ss_pred ChHHHHHHHHhhcccccCC---C-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHH
Q 018272 84 NPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMV 159 (358)
Q Consensus 84 N~Yq~aI~~ig~vl~~yD~---d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI 159 (358)
..++++...+..++..++. . ++-+..|+.... ..|+|+. ....+.++++-+. ++. +.|.|+....|
T Consensus 16 ~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~----~~~~~~~~~~i~~-~~~--~~g~T~~~~AL 85 (177)
T cd01469 16 DDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE----YRTKEEPLSLVKH-ISQ--LLGLTNTATAI 85 (177)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc----cCCHHHHHHHHHh-Ccc--CCCCccHHHHH
Confidence 4567777777777777775 4 899999998742 2355531 1234555554443 332 56789999999
Q ss_pred HHHHHHH--Hhc---CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCC
Q 018272 160 EAAVDIV--EES---GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 160 ~~a~~~~--~~~---~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~ 216 (358)
+.|.+.. ... ...-.|+++||||.-+| -..+.+++..+-..-+-|.-||||+.
T Consensus 86 ~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~----~~~~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 86 QYVVTELFSESNGARKDATKVLVVITDGESHD----DPLLKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHHHhcCcccCCCCCCCeEEEEEeCCCCCC----ccccHHHHHHHHHCCcEEEEEEeccc
Confidence 9998774 221 12356888899999887 23334455556667899999999985
No 67
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.19 E-value=0.0063 Score=55.65 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=102.5
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccccc-CC--C-ceeEEeecCCCCCCCCccccCCC
Q 018272 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF-DG--D-CIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~y-D~--d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
.+|+||.+.|-.. + +..+|.++.+...+..++..| |. . ++-+..|+++.... ..+++
T Consensus 6 ~vi~lD~S~sM~a-------~--------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT-- 66 (187)
T cd01452 6 TMICIDNSEYMRN-------G--------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLT-- 66 (187)
T ss_pred EEEEEECCHHHHc-------C--------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCC--
Confidence 5789999977431 0 224799999999998887444 32 3 88889999853211 12222
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccCCcchhHHHHHHHHHHhcC
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---GLHHVLVIITSGQVATGSQQEQETIRSIVDASS 203 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~ 203 (358)
.....++..- ..+.+.|.+++..-|+.|...-+... ..=-|++|++++.-.| ..+..+++.++.+
T Consensus 67 ----~D~~~~~~~L----~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d----~~~i~~~~~~lkk 134 (187)
T cd01452 67 ----NDQGKILSKL----HDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED----EKDLVKLAKRLKK 134 (187)
T ss_pred ----CCHHHHHHHH----HhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC----HHHHHHHHHHHHH
Confidence 1344444433 34556799999999998887765432 1235667777775555 5666677777777
Q ss_pred CCeEEEEEeeCCC--CchhhhhccCCCCCcccceeEeeeccc
Q 018272 204 YPLSIVLVGVGDG--PWESIQKFHDKIPALQFDNFHFVNFTA 243 (358)
Q Consensus 204 lPlSIiiVGVG~~--~f~~m~~LD~~~~~r~rDnvqFV~f~~ 243 (358)
..+.+-+||+|+. +-+.++.|-+.... -|+-+||....
T Consensus 135 ~~I~v~vI~~G~~~~~~~~l~~~~~~~~~--~~~s~~~~~~~ 174 (187)
T cd01452 135 NNVSVDIINFGEIDDNTEKLTAFIDAVNG--KDGSHLVSVPP 174 (187)
T ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCCceEEEeCC
Confidence 7888888888865 44555555443322 37788887654
No 68
>PRK13685 hypothetical protein; Provisional
Probab=97.09 E-value=0.0063 Score=59.89 Aligned_cols=140 Identities=11% Similarity=0.089 Sum_probs=88.7
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
.+++++||-|.|=. +. +..+|..+.|-.++..+++.+.++ .+-++.|++.... +.+++
T Consensus 89 ~~vvlvlD~S~SM~--~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t--- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMR--AT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT--- 147 (326)
T ss_pred ceEEEEEECCcccc--CC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC---
Confidence 57889999987742 11 123578888989999999998666 9999999986421 12222
Q ss_pred CCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCccCCcc-h-hHHHHHHH
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE--------SGGLHHVLVIITSGQVATGS-Q-QEQETIRS 197 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~-~-~~~~t~~a 197 (358)
...+.+ ...+..++..|-|+...-|..+.+..++ .....-++++||||.-+... + +.....++
T Consensus 148 ---~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~a 220 (326)
T PRK13685 148 ---TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTA 220 (326)
T ss_pred ---CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHH
Confidence 233333 2333345566778888888888877652 11123456788999765310 0 01122345
Q ss_pred HHHhcCCCeEEEEEeeCCC
Q 018272 198 IVDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 198 Iv~AS~lPlSIiiVGVG~~ 216 (358)
...|.+..+.|-.||||..
T Consensus 221 a~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 221 ARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHcCCeEEEEEECCC
Confidence 5666677888888999874
No 69
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.02 E-value=0.0002 Score=55.39 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=34.3
Q ss_pred cCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018272 310 EAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 353 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~~ 353 (358)
+...|+||.+-.+++++ +|||.+++.|+.++ ..||+|++++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46799999999999998 99999999999976 4599999998864
No 70
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.01 E-value=0.026 Score=50.29 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhccc-ccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHH
Q 018272 85 PYQEVIYITGKELV-LFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAA 162 (358)
Q Consensus 85 ~Yq~aI~~ig~vl~-~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a 162 (358)
..+.|..++..++. .+..+ .+-++.|.+...+ .++++. .+.+.+.+ .+..+...|-|++..-|+.+
T Consensus 18 rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~t------~~~~~~~~----~l~~l~~~G~T~l~~aL~~a 85 (178)
T cd01451 18 RMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPPT------RSVELAKR----RLARLPTGGGTPLAAGLLAA 85 (178)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCCC------CCHHHHHH----HHHhCCCCCCCcHHHHHHHH
Confidence 45556666666554 34455 8999999764211 122222 24444433 33445668999999999999
Q ss_pred HHHHH-hc--CCceEEEEEEeCCccCCcchhHHHH-HHHHHHhcCCCeEEEEEeeCCCC--chhhhhcc
Q 018272 163 VDIVE-ES--GGLHHVLVIITSGQVATGSQQEQET-IRSIVDASSYPLSIVLVGVGDGP--WESIQKFH 225 (358)
Q Consensus 163 ~~~~~-~~--~~~Y~VLlIiTDG~i~d~~~~~~~t-~~aIv~AS~lPlSIiiVGVG~~~--f~~m~~LD 225 (358)
.+..+ +. ...-.++++||||.-+......... .++..++....+.|+.||+|..+ -+.|++|=
T Consensus 86 ~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 86 YELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHH
Confidence 98872 21 1223688899999866310012233 55555666778888999998754 34566663
No 71
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00022 Score=70.47 Aligned_cols=44 Identities=25% Similarity=0.764 Sum_probs=34.8
Q ss_pred cccCCCccCcccCCCC-------------ee-ecCCCCCchhhhhcC----CCCCCCccccC
Q 018272 308 VAEAQRCCICCEDEKD-------------TA-FECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~-------------~v-~pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
..++..|.||+|.... +- +||||.+=-+|.+.| +.||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4567899999997222 12 499999999999877 78999999943
No 72
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00027 Score=68.19 Aligned_cols=41 Identities=27% Similarity=0.711 Sum_probs=34.8
Q ss_pred CCCccCcccCCCC----eeecCCCCCchhhhhcC-----CCCCCCccccC
Q 018272 311 AQRCCICCEDEKD----TAFECGHMSCIKCALRM-----PQCPFCREEIT 351 (358)
Q Consensus 311 ~~~C~IC~~~~~~----~v~pCgH~~C~~C~~~~-----~~CP~CR~~i~ 351 (358)
..+|.||+++... +++||.|.|=..|..+| .+||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4799999997654 34499999999999998 57999999875
No 73
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.95 E-value=0.015 Score=51.59 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=81.8
Q ss_pred ChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeecc-CCChHHH
Q 018272 84 NPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFG-PTSYAPM 158 (358)
Q Consensus 84 N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~g-pt~fapv 158 (358)
..++++..-+..++..|+ +. ++.+.-|+.... ..|+|+.- ...++++++-.+. +. ..| .|+-...
T Consensus 16 ~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~----~~~~~l~~~i~~i-~~--~~g~~t~t~~A 85 (165)
T cd01481 16 GNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH----STKADVLGAVRRL-RL--RGGSQLNTGSA 85 (165)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc----CCHHHHHHHHHhc-cc--CCCCcccHHHH
Confidence 456677777777777776 44 899999998643 23566421 1456676665543 22 245 4788888
Q ss_pred HHHHHHHHHh--c-----CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 159 VEAAVDIVEE--S-----GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 159 I~~a~~~~~~--~-----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
|+.+.+..-. . .+--.+|++||||.-.| +..+..+.+. +.-+-|+.||+|..+...|+.+-++
T Consensus 86 L~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d---~~~~~a~~lr---~~gv~i~~vG~~~~~~~eL~~ias~ 155 (165)
T cd01481 86 LDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD---DVERPAVALK---RAGIVPFAIGARNADLAELQQIAFD 155 (165)
T ss_pred HHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc---hHHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHhCC
Confidence 8888765321 1 12247889999998776 2334444444 4567888888887777777666553
No 74
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.95 E-value=0.00026 Score=54.89 Aligned_cols=36 Identities=33% Similarity=0.882 Sum_probs=27.6
Q ss_pred CCccCcccCC-------------CCeee-cCCCCCchhhhhcC----CCCCCCc
Q 018272 312 QRCCICCEDE-------------KDTAF-ECGHMSCIKCALRM----PQCPFCR 347 (358)
Q Consensus 312 ~~C~IC~~~~-------------~~~v~-pCgH~~C~~C~~~~----~~CP~CR 347 (358)
..|.||++.. ..+++ +|||.|-..|+.++ ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3599999876 22344 89999999999976 6799998
No 75
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.93 E-value=0.00051 Score=67.35 Aligned_cols=46 Identities=37% Similarity=0.821 Sum_probs=39.2
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC------CCCCCCccccCCee
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM------PQCPFCREEITTRR 354 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~------~~CP~CR~~i~~~~ 354 (358)
++...|.||-+..+-+.+ ||+|.+|..|+.++ +.||+||..-..++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 456899999998888776 99999999999986 68999999876653
No 76
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=4.6e-05 Score=74.69 Aligned_cols=49 Identities=31% Similarity=0.647 Sum_probs=40.3
Q ss_pred ccccCCCccCcccCCCCeee--cCCCCCchhhhhcC-----CCCCCCccccCCeee
Q 018272 307 EVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM-----PQCPFCREEITTRRR 355 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~-----~~CP~CR~~i~~~~~ 355 (358)
.+..+..|+||++..+.+.. .|+|.||..|+++- ..||.||+.......
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 44567899999998877544 99999999999964 689999999877543
No 77
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.001 Score=63.37 Aligned_cols=43 Identities=28% Similarity=0.758 Sum_probs=36.5
Q ss_pred ccCCCccCcccCCCCeee--cCCCCCchhhhhcC------CCCCCCccccC
Q 018272 309 AEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPFCREEIT 351 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~------~~CP~CR~~i~ 351 (358)
+..-+|++|-+.++.+-. +|||.+|..|+..- -.||.|.++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 456799999999988764 89999999999864 36999998876
No 78
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.60 E-value=0.029 Score=59.76 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=94.7
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccc-ccCCC-ceeEEeecCCCCCCCCccccC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELV-LFDGD-CIRCYGFGDDTTRDEGVFSFQ 124 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~-~yD~d-~ip~~GFGa~~~~~~~~f~~~ 124 (358)
....+++.||.|.|-. .+.-..|-.++..+|. .|-.. .+-++.|++... ..+++..
T Consensus 400 ~~~~vvfvvD~SGSM~--------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a--~~~lppT 457 (584)
T PRK13406 400 SETTTIFVVDASGSAA--------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA--ELLLPPT 457 (584)
T ss_pred CCccEEEEEECCCCCc--------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce--eEEcCCC
Confidence 4577888888887731 1233445555555553 46666 999999965411 1112211
Q ss_pred CCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccCCcc-------hhHHHHH
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGS-------QQEQETI 195 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~-------~~~~~t~ 195 (358)
..++.+ ++.+..+.-.|-|.++.-|..|.+..++. .+.-.++++||||.-+... ....+..
T Consensus 458 ------~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~ 527 (584)
T PRK13406 458 ------RSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDAL 527 (584)
T ss_pred ------cCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHH
Confidence 244444 34445666789999999999998887653 2234677889999876310 0013445
Q ss_pred HHHHHhcCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 196 RSIVDASSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 196 ~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
++...+...-+.+++|++|....+.|++|=+.
T Consensus 528 ~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~~ 559 (584)
T PRK13406 528 AAARALRAAGLPALVIDTSPRPQPQARALAEA 559 (584)
T ss_pred HHHHHHHhcCCeEEEEecCCCCcHHHHHHHHh
Confidence 55555666778999999998887788877543
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.60 E-value=0.00095 Score=48.85 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=33.7
Q ss_pred CCCccCcccCCCCee-ecCCCCCchhhhh--cCCCCCCCccccCC
Q 018272 311 AQRCCICCEDEKDTA-FECGHMSCIKCAL--RMPQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v-~pCgH~~C~~C~~--~~~~CP~CR~~i~~ 352 (358)
...|..|......-+ +||||.+|..|-. +...||+|..+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 457888888766544 4999999999976 55889999998875
No 80
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.58 E-value=0.011 Score=50.43 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=76.3
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCCCCCC
Q 018272 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSPC 130 (358)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~~~~~ 130 (358)
+.||||-|+|=. .....+.+..|..+++.+.. .+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis--------------------~~~l~~fl~ev~~i~~~~~~-~v~vi~~D~~v~~~~~~---~------ 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS--------------------DEELRRFLSEVAGILRRFPA-EVHVIQFDAEVQDVQVF---R------ 50 (126)
T ss_pred CEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhCCC-CEEEEEECCEeeeeeEE---e------
Confidence 468999887732 13567788888899999922 67777787765432211 1
Q ss_pred CCHHHHHHHHHhcCCceee--ccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEE
Q 018272 131 QGFEHVLECYRKNVPNVQY--FGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSI 208 (358)
Q Consensus 131 ~g~~gvl~~Y~~~l~~v~l--~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSI 208 (358)
. ....+..+++ .|-|+|.|+++++.+. .....++++||||..... ..+-.+|+=|
T Consensus 51 -~-------~~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-----------~~~P~~~vlW 107 (126)
T PF09967_consen 51 -S-------LEDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-----------EEAPPYPVLW 107 (126)
T ss_pred -c-------ccccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-----------CCCCCCcEEE
Confidence 1 1111222222 4789999999998654 345678889999987541 0122789999
Q ss_pred EEEe--eCCCCchhhhhc
Q 018272 209 VLVG--VGDGPWESIQKF 224 (358)
Q Consensus 209 iiVG--VG~~~f~~m~~L 224 (358)
++.| -...+|+..-+|
T Consensus 108 vl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 108 VLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred EEeCCCCCCCCCEEEEEe
Confidence 9998 233455544333
No 81
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.55 E-value=0.066 Score=49.35 Aligned_cols=158 Identities=12% Similarity=0.220 Sum_probs=96.1
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc---cCCC-ceeEEeecCCCCCC----CCcc
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRD----EGVF 121 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~---yD~d-~ip~~GFGa~~~~~----~~~f 121 (358)
.++++||.+.|=. . .+ +...++..+.|+..+..+++. ..+. .+-++.||...+.. .+++
T Consensus 3 ~ivf~iDvS~SM~--------~--~~---~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~ 69 (218)
T cd01458 3 SVVFLVDVSPSMF--------E--SK---DGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIY 69 (218)
T ss_pred EEEEEEeCCHHHc--------C--CC---CCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceE
Confidence 3678999986632 0 00 112368999999999999997 5555 99999999975432 3444
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCcee--------eccCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccC---Ccc
Q 018272 122 SFQENDSPCQGFEHVLECYRKNVPNVQ--------YFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVA---TGS 188 (358)
Q Consensus 122 ~~~~~~~~~~g~~gvl~~Y~~~l~~v~--------l~gpt~fapvI~~a~~~~~~~~--~~Y~VLlIiTDG~i~---d~~ 188 (358)
.+.|- ..... ..++.+.+.+.... -++.|.+...|..+.+..++.. ..--.+++||||.=. | .
T Consensus 70 v~~~l--~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~-~ 145 (218)
T cd01458 70 VLLDL--DTPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGD-S 145 (218)
T ss_pred EeecC--CCCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCC-H
Confidence 44321 11122 33344444332221 2457899999999988876521 112456788999533 1 0
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEEeeCCCC--chhhhhc
Q 018272 189 QQEQETIRSIVDASSYPLSIVLVGVGDGP--WESIQKF 224 (358)
Q Consensus 189 ~~~~~t~~aIv~AS~lPlSIiiVGVG~~~--f~~m~~L 224 (358)
...++..+.+.+..+.-+.|..||+|..+ |+..+.+
T Consensus 146 ~~~~~~~~~a~~l~~~gI~i~~i~i~~~~~~f~~~~fy 183 (218)
T cd01458 146 IKDSQAAVKAEDLKDKGIELELFPLSSPGKKFDVSKFY 183 (218)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCCCCCCChhHHH
Confidence 01244555666666778999999998765 5544333
No 82
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.47 E-value=0.0014 Score=66.21 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=36.6
Q ss_pred cccccCCCccCcccCCCC---eee--cCCCCCchhhhhcC--CCCCCCccccC
Q 018272 306 AEVAEAQRCCICCEDEKD---TAF--ECGHMSCIKCALRM--PQCPFCREEIT 351 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~---~v~--pCgH~~C~~C~~~~--~~CP~CR~~i~ 351 (358)
..+.+.++|+||+|+.-. .++ .|-|.|=..|+.++ ..||+||---.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 445788999999997644 334 99999988999999 57999996544
No 83
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0011 Score=66.91 Aligned_cols=44 Identities=32% Similarity=0.927 Sum_probs=38.3
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
..+..|.||+...-.++. ||||.+|..|+.+. ..||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 667899999998888776 99999999997765 679999998875
No 84
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0008 Score=70.82 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=36.2
Q ss_pred ccccCCCccCcccCCCC-----eee-cCCCCCchhhhhcC----CCCCCCcccc
Q 018272 307 EVAEAQRCCICCEDEKD-----TAF-ECGHMSCIKCALRM----PQCPFCREEI 350 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~-----~v~-pCgH~~C~~C~~~~----~~CP~CR~~i 350 (358)
.......|.||.|.... +.. +|||.||..|...+ +.||+||..+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 33456799999997766 444 99999999999988 7899999944
No 85
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.28 E-value=0.066 Score=57.12 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=88.1
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc-cCCC-ceeEEeecCCCCCCCCccccCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL-FDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~-yD~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
..+++.||-|.|=. .+..+.|-.++..++.. |... .+-++.|++... ..++++
T Consensus 408 ~~v~fvvD~SGSM~--------------------~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a--~~~lp~--- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAA--------------------VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAA--EVLLPP--- 462 (589)
T ss_pred ceEEEEEECCCCCC--------------------hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCc--eEECCC---
Confidence 45667788776621 13455566666666653 4444 899999976421 012222
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccCCc---c-----hh---H-H
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATG---S-----QQ---E-Q 192 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~---~-----~~---~-~ 192 (358)
-.+.+.+ ++.+..+..+|.|.++.-|..+.+..++.. ..-.++++||||.-+-. + ++ . +
T Consensus 463 ---t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~ 535 (589)
T TIGR02031 463 ---SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAE 535 (589)
T ss_pred ---CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHH
Confidence 1244443 345667778999999999999998876532 22357788999976421 0 00 1 1
Q ss_pred HHHHHHHHhcCCCeEEEEEeeCCCCc--hhhhhccC
Q 018272 193 ETIRSIVDASSYPLSIVLVGVGDGPW--ESIQKFHD 226 (358)
Q Consensus 193 ~t~~aIv~AS~lPlSIiiVGVG~~~f--~~m~~LD~ 226 (358)
+...+........+.+++||+|.+.. +.+++|=+
T Consensus 536 ~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~ 571 (589)
T TIGR02031 536 EALALARKIREAGMPALVIDTAMRFVSTGFAQKLAR 571 (589)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHH
Confidence 22222333345678999999998744 44776643
No 86
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0024 Score=63.49 Aligned_cols=46 Identities=33% Similarity=0.843 Sum_probs=38.7
Q ss_pred ccCCCccCcccCCCCee-----e----cCCCCCchhhhhcC-----------CCCCCCccccCCee
Q 018272 309 AEAQRCCICCEDEKDTA-----F----ECGHMSCIKCALRM-----------PQCPFCREEITTRR 354 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v-----~----pCgH~~C~~C~~~~-----------~~CP~CR~~i~~~~ 354 (358)
....+|.||++...+.. | +|-|.+|..|+.++ +.||.||.+...++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45679999999888877 4 79999999999976 46999999887654
No 87
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.07 E-value=0.14 Score=49.37 Aligned_cols=135 Identities=14% Similarity=0.064 Sum_probs=75.6
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc-cCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL-FDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~-yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.+++.+.+|.|.|=. +....+..++...++. +.++ .+-++.|+..... ++.++
T Consensus 53 p~~vvlvlD~SgSM~---------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t- 107 (296)
T TIGR03436 53 PLTVGLVIDTSGSMR---------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT- 107 (296)
T ss_pred CceEEEEEECCCCch---------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC-
Confidence 467888888886632 1133455555556655 4556 9999999986432 12232
Q ss_pred CCCCCCCHHHHHHHHHhcCC-----------ceeeccCCChHHHHHHHHH-HHHhcC---CceEEEEEEeCCccCCcchh
Q 018272 126 NDSPCQGFEHVLECYRKNVP-----------NVQYFGPTSYAPMVEAAVD-IVEESG---GLHHVLVIITSGQVATGSQQ 190 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~-----------~v~l~gpt~fapvI~~a~~-~~~~~~---~~Y~VLlIiTDG~i~d~~~~ 190 (358)
...+.+.++-.+.-+ .+...|.|++..-|..++. ...+.. ..=-++++||||.-+..
T Consensus 108 -----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~--- 179 (296)
T TIGR03436 108 -----SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRS--- 179 (296)
T ss_pred -----CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcch---
Confidence 134444444444322 1233678887777765543 322221 01256889999976541
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeeCC
Q 018272 191 EQETIRSIVDASSYPLSIVLVGVGD 215 (358)
Q Consensus 191 ~~~t~~aIv~AS~lPlSIiiVGVG~ 215 (358)
.....+++..+.+.-+.|..||+|+
T Consensus 180 ~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 2223333333445567888888875
No 88
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0034 Score=62.31 Aligned_cols=42 Identities=31% Similarity=0.761 Sum_probs=34.2
Q ss_pred CCccCcccCCCC--e--eecCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018272 312 QRCCICCEDEKD--T--AFECGHMSCIKCALRM-----PQCPFCREEITTR 353 (358)
Q Consensus 312 ~~C~IC~~~~~~--~--v~pCgH~~C~~C~~~~-----~~CP~CR~~i~~~ 353 (358)
.+|.||+|.... - ++||.|.|=..|...| ..||+|++.+.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 499999997665 2 2399999988999988 3499999988764
No 89
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=95.85 E-value=0.1 Score=47.85 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=83.5
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~ 128 (358)
.+++|+|.|+|=.. ++ . . .+..-.-..|...+.+.+..|... .....||++...... ...+ +.|
T Consensus 2 ~l~lavDlSgSM~~-----~~----~-~--dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~-~lt~--d~p 66 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----G-Y--DGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVP-FVKT--NHP 66 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----c-c--CCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccC-cccc--ccC
Confidence 47899999998421 11 0 1 122223344555555555555455 667777766532111 1111 222
Q ss_pred CCCCHH--HHHHHHHhcCCceeeccCCChHHHHHHHHHHHH-hcCCceEEEEEEeCCccCCcchhHHHHHH-HHHHhcCC
Q 018272 129 PCQGFE--HVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVE-ESGGLHHVLVIITSGQVATGSQQEQETIR-SIVDASSY 204 (358)
Q Consensus 129 ~~~g~~--gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~-~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~-aIv~AS~l 204 (358)
.-..-+ .++...-.-+ ++.+.|+..- .-|..+++..+ ++..+=.|+++||||.-+.. .-.-.+ +-.-|.+.
T Consensus 67 ~t~d~~~~~~l~~~l~~~-q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~---~i~P~~aAa~lA~~~ 141 (191)
T cd01455 67 PKNNKERLETLKMMHAHS-QFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLERY---GIQPKKLADALAREP 141 (191)
T ss_pred cccchhHHHHHHHHHHhc-ccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCC---CCChHHHHHHHHHhC
Confidence 222322 2333333222 3445676443 77777777776 55444457788899986542 112233 23335567
Q ss_pred CeEEEEEeeCCCCchhhhhccC
Q 018272 205 PLSIVLVGVGDGPWESIQKFHD 226 (358)
Q Consensus 205 PlSIiiVGVG~~~f~~m~~LD~ 226 (358)
-+=|-.||||..+.+.++.+-.
T Consensus 142 gV~iytIgiG~~d~~~l~~iA~ 163 (191)
T cd01455 142 NVNAFVIFIGSLSDEADQLQRE 163 (191)
T ss_pred CCEEEEEEecCCCHHHHHHHHh
Confidence 7778888888866566655443
No 90
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.82 E-value=0.0045 Score=60.48 Aligned_cols=47 Identities=28% Similarity=0.729 Sum_probs=39.8
Q ss_pred ccccCCCccCcccCCCCeeecC--CCCCchhhhhcC-CCCCCCccccCCe
Q 018272 307 EVAEAQRCCICCEDEKDTAFEC--GHMSCIKCALRM-PQCPFCREEITTR 353 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~pC--gH~~C~~C~~~~-~~CP~CR~~i~~~ 353 (358)
...+-..|+||++....+.+.| ||+.|..|..+. ..||.||.++..+
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccH
Confidence 3456689999999999999955 899999999555 7899999999853
No 91
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0039 Score=60.10 Aligned_cols=43 Identities=28% Similarity=0.643 Sum_probs=37.7
Q ss_pred CCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018272 312 QRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTRR 354 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~ 354 (358)
..|-||.....++|. .|||.||..|+.+. ..|++|.+.+....
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 469999999999888 99999999999865 57999999887754
No 92
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.66 E-value=0.0028 Score=57.88 Aligned_cols=44 Identities=34% Similarity=0.717 Sum_probs=36.8
Q ss_pred CCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018272 311 AQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTRR 354 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~ 354 (358)
...|.||.+....++. .|||.||..|+.+- ..|-+|........
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccce
Confidence 4699999999888888 99999999998753 67999988766543
No 93
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.35 E-value=0.21 Score=53.73 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=85.4
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccc-ccCCC-ceeEEeecCCCCCCCCccccCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELV-LFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~-~yD~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
..+++.||.|+|=. . .+..+.|..++..++. .|-.. .+-+++|++... ..+++++
T Consensus 466 ~~vv~vvD~SgSM~--------~-----------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~t-- 522 (633)
T TIGR02442 466 NLVIFVVDASGSMA--------A-----------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPPT-- 522 (633)
T ss_pred ceEEEEEECCccCC--------C-----------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCCC--
Confidence 46778888887732 0 1345566666666654 45555 999999976411 1122221
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHh----cCCceEEEEEEeCCccCCc---chhHHHHHHHHH
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE----SGGLHHVLVIITSGQVATG---SQQEQETIRSIV 199 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~----~~~~Y~VLlIiTDG~i~d~---~~~~~~t~~aIv 199 (358)
.+.+.+. +.+..+...|.|+++.-|..+.+..++ ....-.++++||||.-+.. ....++..++-.
T Consensus 523 ----~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~ 594 (633)
T TIGR02442 523 ----SSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAA 594 (633)
T ss_pred ----CCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHH
Confidence 2444442 344455678999999999999988763 2223467788999976431 011233333333
Q ss_pred HhcCCCeEEEEEeeCCC--Cchhhhhc
Q 018272 200 DASSYPLSIVLVGVGDG--PWESIQKF 224 (358)
Q Consensus 200 ~AS~lPlSIiiVGVG~~--~f~~m~~L 224 (358)
...+..+-+++|+.+++ +.+.+++|
T Consensus 595 ~l~~~~i~~~vIdt~~~~~~~~~~~~l 621 (633)
T TIGR02442 595 KLAARGILFVVIDTESGFVRLGLAEDL 621 (633)
T ss_pred HHHhcCCeEEEEeCCCCCcchhHHHHH
Confidence 33445677888888765 33444444
No 94
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.33 E-value=0.43 Score=49.78 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=85.4
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHH-HHHHhhcccccCCCceeEEeecCCCCCCCCccccCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEV-IYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~a-I~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
..-.++|.||-|+|=. |. +-.|.+| .-+++.+...=.+ .+-++.|+...... .+.+
T Consensus 322 ~kGpiII~VDtSGSM~--G~----------------ke~~AkalAaAL~~iAl~q~d-r~~li~Fs~~i~~~----~l~~ 378 (487)
T PRK10997 322 PRGPFIVCVDTSGSMG--GF----------------NEQCAKAFCLALMRIALAENR-RCYIMLFSTEVVTY----ELTG 378 (487)
T ss_pred CCCcEEEEEECCCCCC--CC----------------HHHHHHHHHHHHHHHHHhcCC-CEEEEEecCCceee----ccCC
Confidence 3568999999998832 11 1255555 3444444433333 46688898864321 2222
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcC-C
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASS-Y 204 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~-l 204 (358)
-.|+..+++.-.. .+.|.|++++.++.+++..++..-.=-.+|||||+..... .++..++|...-+ .
T Consensus 379 ----~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~---~eel~~~L~~Lk~~~ 446 (487)
T PRK10997 379 ----PDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL---PDELVAKVKELQRQH 446 (487)
T ss_pred ----ccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC---hHHHHHHHHHHHHhc
Confidence 2478887776543 2489999999999999888764223356789999965431 2445555544322 3
Q ss_pred CeEEEEEeeCC-CCchhhhhccC
Q 018272 205 PLSIVLVGVGD-GPWESIQKFHD 226 (358)
Q Consensus 205 PlSIiiVGVG~-~~f~~m~~LD~ 226 (358)
-..+.-|-||+ ++=+.|+.+|.
T Consensus 447 ~~rf~~l~i~~~~~p~l~~ifD~ 469 (487)
T PRK10997 447 QHRFHAVAMSAHGKPGIMRIFDH 469 (487)
T ss_pred CcEEEEEEeCCCCCchHHHhcCe
Confidence 33444444444 44455777774
No 95
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.22 E-value=0.0067 Score=43.36 Aligned_cols=37 Identities=41% Similarity=0.911 Sum_probs=18.4
Q ss_pred ccCcccCC--CCeee---cCCCCCchhhhhcC-----CCCCCCcccc
Q 018272 314 CCICCEDE--KDTAF---ECGHMSCIKCALRM-----PQCPFCREEI 350 (358)
Q Consensus 314 C~IC~~~~--~~~v~---pCgH~~C~~C~~~~-----~~CP~CR~~i 350 (358)
|++|.+.. ++..| +||+.+|+.|..++ ..||.||++-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888754 33344 78999999997765 4699999874
No 96
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.06 E-value=0.013 Score=46.81 Aligned_cols=40 Identities=30% Similarity=0.684 Sum_probs=28.7
Q ss_pred CCccCcccCCCC--eee-cCCCCCchhhhhcC-------CCCCCCccccC
Q 018272 312 QRCCICCEDEKD--TAF-ECGHMSCIKCALRM-------PQCPFCREEIT 351 (358)
Q Consensus 312 ~~C~IC~~~~~~--~v~-pCgH~~C~~C~~~~-------~~CP~CR~~i~ 351 (358)
..|+.|.-.-.+ .++ .|+|.|=..|+.++ ..||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345555544334 345 99999999999876 46999999864
No 97
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.91 E-value=0.006 Score=62.90 Aligned_cols=45 Identities=24% Similarity=0.601 Sum_probs=37.4
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC---------CCCCCCccccC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM---------PQCPFCREEIT 351 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~---------~~CP~CR~~i~ 351 (358)
+-++...|.+|-+...+.+. .|.|.||+.|.... -.||.|....+
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 34566899999999999887 99999999999643 46999987654
No 98
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.83 E-value=0.0051 Score=65.90 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=36.8
Q ss_pred cCCCccCcccCCCCeee----cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018272 310 EAQRCCICCEDEKDTAF----ECGHMSCIKCALRM----PQCPFCREEITTRRR 355 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~----pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~ 355 (358)
....|++|+....+-.. +|+|.||..|...| ..||+||..+.+++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 34678888877666433 89999999999987 679999999988653
No 99
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.67 E-value=0.019 Score=58.18 Aligned_cols=47 Identities=36% Similarity=0.801 Sum_probs=41.1
Q ss_pred cccCCCccCcccCCCCeee--cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018272 308 VAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM----PQCPFCREEITTRR 354 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~----~~CP~CR~~i~~~~ 354 (358)
.+++..|++|.....+++. .|||.||..|...+ ..||.||..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 5678999999999999887 89999999999987 57999998877643
No 100
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=94.55 E-value=0.5 Score=52.47 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=83.5
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~ 128 (358)
.+.+.||-|.|=. |+ ...+.-++|+.... .+.+.++ ++-++.|+...... .+|.+-.
T Consensus 306 ~VVLVLDvSGSM~--g~--------------dRL~~lkqAA~~fL--~~~l~~~DrVGLVtFsssA~vl---~pLt~It- 363 (863)
T TIGR00868 306 IVCLVLDKSGSMT--VE--------------DRLKRMNQAAKLFL--LQTVEKGSWVGMVTFDSAAYIK---NELIQIT- 363 (863)
T ss_pred eEEEEEECCcccc--cc--------------CHHHHHHHHHHHHH--HHhCCCCCEEEEEEECCceeEe---eccccCC-
Confidence 4677888887732 11 11233445554432 1223445 99999999864321 2232111
Q ss_pred CCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCe
Q 018272 129 PCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQVATGSQQEQETIRSIVDASSYPL 206 (358)
Q Consensus 129 ~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPl 206 (358)
. +...++-...++ ....|-|++..-|+.|.+..++... .--.+++||||+-++ ..+..+. +....+
T Consensus 364 ---s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~----~~~~l~~---lk~~gV 431 (863)
T TIGR00868 364 ---S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT----ISSCFEE---VKQSGA 431 (863)
T ss_pred ---c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC----HHHHHHH---HHHcCC
Confidence 1 123334444444 3467899999999999998775421 223567779998665 4444443 344578
Q ss_pred EEEEEeeCCCCchhhhhccC
Q 018272 207 SIVLVGVGDGPWESIQKFHD 226 (358)
Q Consensus 207 SIiiVGVG~~~f~~m~~LD~ 226 (358)
.|-.||+|.+.=..|++|=.
T Consensus 432 tI~TIg~G~dad~~L~~IA~ 451 (863)
T TIGR00868 432 IIHTIALGPSAAKELEELSD 451 (863)
T ss_pred EEEEEEeCCChHHHHHHHHH
Confidence 88899999876555655543
No 101
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.037 Score=52.30 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=36.8
Q ss_pred cCCCccCcccCCCC----eee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 310 EAQRCCICCEDEKD----TAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 310 ~~~~C~IC~~~~~~----~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
....|+||.+...+ +++ ||||.+|.+|..++ ..||+|-.+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 56899999987666 346 99999999999998 4699999988764
No 102
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.60 E-value=0.025 Score=61.07 Aligned_cols=40 Identities=33% Similarity=0.978 Sum_probs=33.8
Q ss_pred CCccCcccCCCCeee-cCCCCCchhhhhcC------CCCCCCccccCC
Q 018272 312 QRCCICCEDEKDTAF-ECGHMSCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
..|.+|.+ ...+++ +|||.+|..|.... ..||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 666666 99999999999875 469999987654
No 103
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=93.51 E-value=0.8 Score=42.63 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=53.4
Q ss_pred ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCC-
Q 018272 104 CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSG- 182 (358)
Q Consensus 104 ~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG- 182 (358)
.+-+|-|+.........+ .. .+..+.+......... ++|-|++...++++.+........-.++||||||
T Consensus 90 ~~~~f~F~~~l~~vT~~l--~~-----~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 90 RVRVFVFSTRLTEVTPLL--RR-----RDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred CEEEEEEeeehhhhhhhh--cc-----CCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccc
Confidence 578899998643222111 11 1344455544433333 8899999999999998877443256888999999
Q ss_pred ccCCcchhHHHHHHHHHHh
Q 018272 183 QVATGSQQEQETIRSIVDA 201 (358)
Q Consensus 183 ~i~d~~~~~~~t~~aIv~A 201 (358)
+-.+ .....+.++.|.+.
T Consensus 161 ~~~~-~~~~~~~l~~l~~r 178 (222)
T PF05762_consen 161 DTND-PEPLAEELRRLRRR 178 (222)
T ss_pred ccCC-hHHHHHHHHHHHHh
Confidence 4444 22233444444443
No 104
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.41 E-value=0.06 Score=51.54 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=36.9
Q ss_pred cccCCCccCcccCCC----Ceee-cCCCCCchhhhhcCC---CCCCCccccCC
Q 018272 308 VAEAQRCCICCEDEK----DTAF-ECGHMSCIKCALRMP---QCPFCREEITT 352 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~----~~v~-pCgH~~C~~C~~~~~---~CP~CR~~i~~ 352 (358)
......|||...... -+++ +|||.++..++..+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 345689999997653 2455 999999999999986 79999999886
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.07 E-value=0.031 Score=55.01 Aligned_cols=44 Identities=32% Similarity=0.745 Sum_probs=32.4
Q ss_pred ccCCCccCcccCC--CCeee---cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDE--KDTAF---ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~--~~~v~---pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
+++..|+.|+|.. .|--| |||-.+|+.|...+ ..||.||.....
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3445699999853 23334 78888999999876 579999987654
No 106
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.24 E-value=0.029 Score=55.01 Aligned_cols=48 Identities=27% Similarity=0.568 Sum_probs=41.1
Q ss_pred ccccCCCccCcccCCCCeee--cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018272 307 EVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM----PQCPFCREEITTRR 354 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~----~~CP~CR~~i~~~~ 354 (358)
++....+|.+|-....|++. -|=|.||+.|+-+. ..||.|...|.+..
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 34566899999999999764 99999999999875 68999999888764
No 107
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.11 Score=50.98 Aligned_cols=44 Identities=16% Similarity=0.520 Sum_probs=34.0
Q ss_pred cccCCCccCcccCCCCe-ee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018272 308 VAEAQRCCICCEDEKDT-AF-ECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~-v~-pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
..+...|+||+....++ ++ --|-.||..|+-.. .+||+-.-+..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 34567999999877764 45 77999999999864 78998665543
No 108
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.074 Score=54.71 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=33.8
Q ss_pred cccCCCccCcccCC-----------------CCeee-cCCCCCchhhhhcC----C-CCCCCccccCC
Q 018272 308 VAEAQRCCICCEDE-----------------KDTAF-ECGHMSCIKCALRM----P-QCPFCREEITT 352 (358)
Q Consensus 308 ~~~~~~C~IC~~~~-----------------~~~v~-pCgH~~C~~C~~~~----~-~CP~CR~~i~~ 352 (358)
.....-|+||+..- ++-.+ ||-|.+=+.|+.++ + .||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34567899999631 12234 99999999999987 3 79999998753
No 109
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=90.33 E-value=0.084 Score=39.04 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=25.9
Q ss_pred ccCCCccCcccCCCCeee--cCCCCCchhhhhcC------CCCCC
Q 018272 309 AEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPF 345 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~------~~CP~ 345 (358)
.-...|+|.+....+++. .|||.|.++.+..+ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 446899999999999987 99999999998876 35998
No 110
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.16 E-value=0.1 Score=45.03 Aligned_cols=43 Identities=30% Similarity=0.802 Sum_probs=36.3
Q ss_pred CCCccCcccCCCCeee-----cCCCCCchhhhhcC-------CCCCCCccccCCe
Q 018272 311 AQRCCICCEDEKDTAF-----ECGHMSCIKCALRM-------PQCPFCREEITTR 353 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~~-------~~CP~CR~~i~~~ 353 (358)
-.+|-||.|...+.-| -||-..|..|...+ +.||+|+..+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4689999999999776 38988999998776 5799999998764
No 111
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=0.09 Score=53.04 Aligned_cols=31 Identities=32% Similarity=0.842 Sum_probs=25.4
Q ss_pred cCCCccCcccCCCC---eee-cCCCCCchhhhhcC
Q 018272 310 EAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM 340 (358)
Q Consensus 310 ~~~~C~IC~~~~~~---~v~-pCgH~~C~~C~~~~ 340 (358)
....|.||++...- ..+ ||+|.+|..|+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 34799999998766 455 99999999999853
No 112
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.17 Score=48.62 Aligned_cols=44 Identities=20% Similarity=0.633 Sum_probs=33.3
Q ss_pred ccCCCccCcccCCCCee-----------ecCCCCCchhhhhcC------CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTA-----------FECGHMSCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v-----------~pCgH~~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
.++..|.||-......+ +.|+|.|=..|+..+ +.||.|++.++.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45679999987543322 399999877787765 689999998865
No 113
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.98 E-value=0.16 Score=49.43 Aligned_cols=37 Identities=27% Similarity=0.641 Sum_probs=32.5
Q ss_pred CCccCcccCCCCeee--cCCCCCchhhhhcC-----CCCCCCcc
Q 018272 312 QRCCICCEDEKDTAF--ECGHMSCIKCALRM-----PQCPFCRE 348 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~-----~~CP~CR~ 348 (358)
+.|+.|-...++++- -|||.||.+|+... ..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 789999999999876 68999999999953 68999976
No 114
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=86.40 E-value=0.51 Score=46.23 Aligned_cols=48 Identities=13% Similarity=-0.043 Sum_probs=39.3
Q ss_pred ccCCCccCcccCCCCeee-cCCCC-CchhhhhcC--CCCCCCccccCCeeec
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRM--PQCPFCREEITTRRRV 356 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~--~~CP~CR~~i~~~~~~ 356 (358)
-..++|.+|-+......+ +|||+ +|.+|+..- ..||.|.......+++
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 345899999999988888 99999 999999854 6899998766555543
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.21 E-value=0.32 Score=34.71 Aligned_cols=43 Identities=30% Similarity=0.785 Sum_probs=22.4
Q ss_pred CCccCcccCCCCeeecCC-CCCchhhhhcC----CCCCCCccccCCeee
Q 018272 312 QRCCICCEDEKDTAFECG-HMSCIKCALRM----PQCPFCREEITTRRR 355 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~pCg-H~~C~~C~~~~----~~CP~CR~~i~~~~~ 355 (358)
..|+-|+-..+. .+.|. |.+|..|+..| ..||+|..++...++
T Consensus 3 ~nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 3 YNCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ----SS-S--SS-EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred ccChhhhhcCCC-eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 358888843333 33675 66999999988 469999999887653
No 116
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=85.11 E-value=3.7 Score=39.41 Aligned_cols=107 Identities=12% Similarity=0.219 Sum_probs=69.9
Q ss_pred ccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC----Cce
Q 018272 99 LFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG----GLH 173 (358)
Q Consensus 99 ~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~----~~Y 173 (358)
.|-.- ++.+.+|=+... ++ =+.|. ..++.+ .+.+..+...|-|-+++-|+.+.+...+.. ..-
T Consensus 111 AYq~RdkvavI~F~G~~A---~l-ll~pT----~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~ 178 (261)
T COG1240 111 AYQRRDKVAVIAFRGEKA---EL-LLPPT----SSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRR 178 (261)
T ss_pred HHHccceEEEEEecCCcc---eE-EeCCc----ccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcc
Confidence 45554 888999965321 11 11222 234443 333444556899999999999988865432 356
Q ss_pred EEEEEEeCCccCCcchh--HHHHHHHHHHhcCCCeEEEEEeeCCCC
Q 018272 174 HVLVIITSGQVATGSQQ--EQETIRSIVDASSYPLSIVLVGVGDGP 217 (358)
Q Consensus 174 ~VLlIiTDG~i~d~~~~--~~~t~~aIv~AS~lPlSIiiVGVG~~~ 217 (358)
.++++||||..++..+. ..+|..+-......++-+++|....+.
T Consensus 179 ~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 179 PVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred eEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 78889999987664221 467777777777788888888887766
No 117
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=84.33 E-value=3.5 Score=37.95 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=47.0
Q ss_pred CceeeccCCChHHHHHHHHHHHHhc--------CCce-EEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCC
Q 018272 145 PNVQYFGPTSYAPMVEAAVDIVEES--------GGLH-HVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGD 215 (358)
Q Consensus 145 ~~v~l~gpt~fapvI~~a~~~~~~~--------~~~Y-~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~ 215 (358)
|.+.-.|-|....-|+.+++.+++. .+.| .+.++||||..+| .....+++..--++++--+-+..||+-+
T Consensus 71 p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD-~w~~~~~~~~~~~~~~k~v~a~~~G~~~ 149 (207)
T COG4245 71 PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD-DWQAGAALVFQGERRAKSVAAFSVGVQG 149 (207)
T ss_pred CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch-HHHhHHHHhhhcccccceEEEEEecccc
Confidence 3344568888888888888886643 1222 3446779999998 1111122222333444444455555555
Q ss_pred CCchhhhhccC
Q 018272 216 GPWESIQKFHD 226 (358)
Q Consensus 216 ~~f~~m~~LD~ 226 (358)
++-..++++-+
T Consensus 150 ad~~~L~qit~ 160 (207)
T COG4245 150 ADNKTLNQITE 160 (207)
T ss_pred cccHHHHHHHH
Confidence 67777777764
No 118
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.24 E-value=0.54 Score=37.93 Aligned_cols=32 Identities=28% Similarity=0.815 Sum_probs=24.9
Q ss_pred cccCCCccCcccCCCCeee---cCCCCCchhhhhc
Q 018272 308 VAEAQRCCICCEDEKDTAF---ECGHMSCIKCALR 339 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~---pCgH~~C~~C~~~ 339 (358)
+++...|.+|.....+.+| ||||.+-..|..+
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 4556789999998776443 9999998888754
No 119
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=83.74 E-value=0.43 Score=46.69 Aligned_cols=40 Identities=25% Similarity=0.670 Sum_probs=28.7
Q ss_pred CccCcccCCCCee--e-cCCCCCchhhhhcC--CCCCCCccccCCe
Q 018272 313 RCCICCEDEKDTA--F-ECGHMSCIKCALRM--PQCPFCREEITTR 353 (358)
Q Consensus 313 ~C~IC~~~~~~~v--~-pCgH~~C~~C~~~~--~~CP~CR~~i~~~ 353 (358)
.|--| +.+..+. + ||.|.||.+|+..- +.||.|-..+.++
T Consensus 92 fCd~C-d~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 92 FCDRC-DFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred eeccc-CCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHH
Confidence 34444 4444443 3 99999999999876 5899998877653
No 120
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.27 E-value=0.42 Score=52.91 Aligned_cols=43 Identities=30% Similarity=0.750 Sum_probs=31.4
Q ss_pred cCCCccCcccCCC--Ceee------cCCCCCchhhhhcC------CCCCCCccccCC
Q 018272 310 EAQRCCICCEDEK--DTAF------ECGHMSCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~~~--~~v~------pCgH~~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
...+|.||+.-.. +-.+ -|.|-|=..|+-+| ..||+||..|+-
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4579999996322 1122 57788888999887 579999988764
No 121
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=80.98 E-value=6.2 Score=40.75 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC-CceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCC
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG-GLHHVLVIITSGQVATGSQQEQETIRSIVDASSYP 205 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~-~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lP 205 (358)
.+...|++++++--..... +| |+|...|+.|++..++.. .+|-+ |+||||.-.- +.+....++.+.++++.=
T Consensus 326 ~~k~~~~~e~i~fL~~~f~----GG-TD~~~~l~~al~~~k~~~~~~adi-v~ITDg~~~~-~~~~~~~v~e~~k~~~~r 398 (437)
T COG2425 326 YEKKIDIEELIEFLSYVFG----GG-TDITKALRSALEDLKSRELFKADI-VVITDGEDER-LDDFLRKVKELKKRRNAR 398 (437)
T ss_pred cCCccCHHHHHHHHhhhcC----CC-CChHHHHHHHHHHhhcccccCCCE-EEEeccHhhh-hhHHHHHHHHHHHHhhce
Confidence 3455689998875544433 46 999999999999998652 24454 6779994322 011355666666666655
Q ss_pred eEEEEEe
Q 018272 206 LSIVLVG 212 (358)
Q Consensus 206 lSIiiVG 212 (358)
+--|+||
T Consensus 399 l~aV~I~ 405 (437)
T COG2425 399 LHAVLIG 405 (437)
T ss_pred EEEEEec
Confidence 5444433
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=80.54 E-value=3.2 Score=41.02 Aligned_cols=44 Identities=32% Similarity=0.739 Sum_probs=34.0
Q ss_pred cCCCccCcccCC--CC-eee--cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 310 EAQRCCICCEDE--KD-TAF--ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 310 ~~~~C~IC~~~~--~~-~v~--pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
-...|++|.+.. .+ ..+ ||||..|..|.... ..||.||.+...-
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 347999999854 33 334 89999999999876 5799999877653
No 123
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.90 E-value=0.44 Score=37.38 Aligned_cols=41 Identities=29% Similarity=0.592 Sum_probs=30.0
Q ss_pred CCCccCcccCCCC-ee-e-cCCCCCchhhhhcC-------CCCCCCccccC
Q 018272 311 AQRCCICCEDEKD-TA-F-ECGHMSCIKCALRM-------PQCPFCREEIT 351 (358)
Q Consensus 311 ~~~C~IC~~~~~~-~v-~-pCgH~~C~~C~~~~-------~~CP~CR~~i~ 351 (358)
+..|+-|.-..-+ ++ + -|.|.|=..|+.++ ..||+||+...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3567777655555 33 3 89999999999876 46999999754
No 124
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.93 E-value=0.95 Score=32.45 Aligned_cols=38 Identities=21% Similarity=0.568 Sum_probs=19.0
Q ss_pred CCccCcccCCCCeee--cCCCCCchhhhh--------cCCCCCCCccc
Q 018272 312 QRCCICCEDEKDTAF--ECGHMSCIKCAL--------RMPQCPFCREE 349 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~--pCgH~~C~~C~~--------~~~~CP~CR~~ 349 (358)
..|++.......++- .|.|.-|..=.. ..+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 579999988888886 999996643211 22789999874
No 125
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=78.23 E-value=0.63 Score=35.70 Aligned_cols=42 Identities=26% Similarity=0.656 Sum_probs=17.9
Q ss_pred CCCccCcccCCC-C---eee-----cCCCCCchhhhhcC---------------CCCCCCccccCC
Q 018272 311 AQRCCICCEDEK-D---TAF-----ECGHMSCIKCALRM---------------PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~-~---~v~-----pCgH~~C~~C~~~~---------------~~CP~CR~~i~~ 352 (358)
+..|.||++... + +.+ .|++.+=..|+.++ ..||.|+.+|+-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998654 2 222 35544444666654 259999998864
No 126
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=75.87 E-value=0.87 Score=46.01 Aligned_cols=42 Identities=31% Similarity=0.721 Sum_probs=0.0
Q ss_pred CCCccCcccC-------------------CCCeee-cCCCCCchhhhhcC-------------CCCCCCccccCC
Q 018272 311 AQRCCICCED-------------------EKDTAF-ECGHMSCIKCALRM-------------PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~-------------------~~~~v~-pCgH~~C~~C~~~~-------------~~CP~CR~~i~~ 352 (358)
..+|++|+.. +..-+| ||||+.-.+.+.-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6899999842 223467 99999777766644 359999999875
No 127
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.06 E-value=2.6 Score=42.40 Aligned_cols=19 Identities=21% Similarity=0.665 Sum_probs=12.4
Q ss_pred cCCCccCcccCCCCeee--cC
Q 018272 310 EAQRCCICCEDEKDTAF--EC 328 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~--pC 328 (358)
+...|.-|+....++.+ .|
T Consensus 270 e~e~CigC~~~~~~vkl~k~C 290 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRC 290 (358)
T ss_pred ccCCccccccCCCCcEEEecc
Confidence 44567777776666665 66
No 128
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=73.02 E-value=2 Score=30.61 Aligned_cols=35 Identities=31% Similarity=0.751 Sum_probs=24.8
Q ss_pred CccCccc--CCCCeee-cCC-----CCCchhhhhcC------CCCCCCc
Q 018272 313 RCCICCE--DEKDTAF-ECG-----HMSCIKCALRM------PQCPFCR 347 (358)
Q Consensus 313 ~C~IC~~--~~~~~v~-pCg-----H~~C~~C~~~~------~~CP~CR 347 (358)
.|.||++ ...+..+ ||. |.+=..|+.++ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 3334555 985 55667888876 4699995
No 129
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.45 E-value=0.94 Score=48.82 Aligned_cols=45 Identities=27% Similarity=0.708 Sum_probs=37.3
Q ss_pred cccCCCccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCCccccCC
Q 018272 308 VAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFCREEITT 352 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-------~~CP~CR~~i~~ 352 (358)
+.-..+|+||+......+. .|-|.||..|.... ..||+|+..+++
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 3456799999998888766 99999999998865 469999977665
No 130
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=72.02 E-value=15 Score=34.47 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=28.3
Q ss_pred CceEEEEEEeCCccCCc-----------chhHHHHHHHHHHhcCCCeEEEEEeeCC
Q 018272 171 GLHHVLVIITSGQVATG-----------SQQEQETIRSIVDASSYPLSIVLVGVGD 215 (358)
Q Consensus 171 ~~Y~VLlIiTDG~i~d~-----------~~~~~~t~~aIv~AS~lPlSIiiVGVG~ 215 (358)
.+=-||++|+||...|. ..+++++++.|- ..-++-++-||||.
T Consensus 134 e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie--~~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 134 EQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIE--TRSDVELIAIGIGH 187 (219)
T ss_pred ccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHh--ccCCcEEEEEEcCC
Confidence 34569999999988863 122344444443 23488899999986
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=70.29 E-value=2.7 Score=41.42 Aligned_cols=43 Identities=28% Similarity=0.677 Sum_probs=28.7
Q ss_pred cCCCccCcccC-------------------CCCeee-cCCCCCchhhhhcC-------------CCCCCCccccCC
Q 018272 310 EAQRCCICCED-------------------EKDTAF-ECGHMSCIKCALRM-------------PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~-------------------~~~~v~-pCgH~~C~~C~~~~-------------~~CP~CR~~i~~ 352 (358)
..++|++|+.. +.+-+| ||||++-..-..-+ ..||.|-..+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 46899999853 223457 99998554443322 359999887765
No 132
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=70.16 E-value=14 Score=39.20 Aligned_cols=164 Identities=11% Similarity=0.143 Sum_probs=98.6
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccC-CCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCC---CCCccccC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVD-GDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTR---DEGVFSFQ 124 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~-~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~---~~~~f~~~ 124 (358)
+-+++-||.|+|-.. +++. ....--..+|+..++.-++--.+- ..+|+|-.+..+ -+.|-+|+
T Consensus 447 la~TLLvD~S~St~a------------~mdetrRvidl~~eaL~~la~~~qa~gd~-~~~~~fts~rr~~vri~tvk~FD 513 (637)
T COG4548 447 LAFTLLVDVSASTDA------------KMDETRRVIDLFHEALLVLAHGHQALGDS-EDILDFTSRRRPWVRINTVKDFD 513 (637)
T ss_pred ceeEEEeecccchHH------------HhhhhhhhHHHHHHHHHHhhchhhhhCCH-HHhcCchhhcCcceeeeeeeccc
Confidence 567778888888541 2310 111345566777766655554333 345666654332 12233332
Q ss_pred CCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcc-----hhHHHHHHHHH
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGS-----QQEQETIRSIV 199 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~-----~~~~~t~~aIv 199 (358)
.. .-..+ ...+..+++.--|--...|++|.+.--+.+++=-.|+++|||...|.. ...+.|.+|++
T Consensus 514 es--~~~~~-------~~RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~ 584 (637)
T COG4548 514 ES--MGETV-------GPRIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVI 584 (637)
T ss_pred cc--ccccc-------chhheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHH
Confidence 11 00001 111222344455677788999877755444556778899999999862 12468999999
Q ss_pred HhcCCCeEEEEEeeCCCCchhhhhccCCCCCcccceeEeee
Q 018272 200 DASSYPLSIVLVGVGDGPWESIQKFHDKIPALQFDNFHFVN 240 (358)
Q Consensus 200 ~AS~lPlSIiiVGVG~~~f~~m~~LD~~~~~r~rDnvqFV~ 240 (358)
+|-+.-|+++-|=|..+.-+.+..+-+. |..-||+
T Consensus 585 eaRk~Gi~VF~Vtld~ea~~y~p~~fgq------ngYa~V~ 619 (637)
T COG4548 585 EARKSGIEVFNVTLDREAISYLPALFGQ------NGYAFVE 619 (637)
T ss_pred HHHhcCceEEEEEecchhhhhhHHHhcc------CceEEcc
Confidence 9999999999999988776666555442 6666665
No 133
>PHA03096 p28-like protein; Provisional
Probab=69.93 E-value=1.7 Score=42.44 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCccCcccCCCC--------eee-cCCCCCchhhhhcC
Q 018272 312 QRCCICCEDEKD--------TAF-ECGHMSCIKCALRM 340 (358)
Q Consensus 312 ~~C~IC~~~~~~--------~v~-pCgH~~C~~C~~~~ 340 (358)
..|.||+++... ..+ .|-|.||..|...+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 589999986432 345 89999999999966
No 134
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=69.06 E-value=1 Score=39.08 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=23.7
Q ss_pred CCCccCcccCCCC--ee-e-cCC------CCCchhhhhcC
Q 018272 311 AQRCCICCEDEKD--TA-F-ECG------HMSCIKCALRM 340 (358)
Q Consensus 311 ~~~C~IC~~~~~~--~v-~-pCg------H~~C~~C~~~~ 340 (358)
..+|.||++.--+ .+ . +|| |+||..|..++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 5799999997655 33 3 888 44899999988
No 135
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=68.45 E-value=1.8 Score=41.90 Aligned_cols=48 Identities=17% Similarity=0.497 Sum_probs=24.6
Q ss_pred cCCCccCcccCCCCeee-cC---CCC--CchhhhhcC----CCCCCCccccCCeeecC
Q 018272 310 EAQRCCICCEDEKDTAF-EC---GHM--SCIKCALRM----PQCPFCREEITTRRRVY 357 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~-pC---gH~--~C~~C~~~~----~~CP~CR~~i~~~~~~f 357 (358)
....||||-..+.-.++ .= |+. .|..|...+ ..||.|-..-...+..|
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 35799999998888777 32 544 899999987 57999988777665544
No 136
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=68.44 E-value=2.8 Score=33.20 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCccCcccCC-----CCeee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018272 312 QRCCICCEDE-----KDTAF-ECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 312 ~~C~IC~~~~-----~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
..|+-|.... ..++. .|.|.|=..|+.++ ..||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4666666521 22344 89999999999998 56999999764
No 137
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.75 E-value=2 Score=37.36 Aligned_cols=38 Identities=37% Similarity=0.924 Sum_probs=27.0
Q ss_pred ccCCCccCcccCCCCeee--cCCCC-------CchhhhhcC--------CCCCCCcccc
Q 018272 309 AEAQRCCICCEDEKDTAF--ECGHM-------SCIKCALRM--------PQCPFCREEI 350 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--pCgH~-------~C~~C~~~~--------~~CP~CR~~i 350 (358)
.+..+|-||.. +-| .|||. +|..|.-+. +.|-.||...
T Consensus 63 ~ddatC~IC~K----TKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHK----TKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhh----cccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 45679999983 234 78987 477777654 5698998653
No 138
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=65.67 E-value=0.97 Score=44.12 Aligned_cols=42 Identities=36% Similarity=0.789 Sum_probs=29.6
Q ss_pred CCCccCcccCCCC-eee---cCCCCCchhhhhcC---------------------------CCCCCCccccCC
Q 018272 311 AQRCCICCEDEKD-TAF---ECGHMSCIKCALRM---------------------------PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~~-~v~---pCgH~~C~~C~~~~---------------------------~~CP~CR~~i~~ 352 (358)
...|.||+=-+.+ ..| +|-|.+=..|+.+. ..||+||..|..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4689999865544 223 99999766665542 249999998865
No 139
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.70 E-value=5.1 Score=38.97 Aligned_cols=31 Identities=32% Similarity=0.804 Sum_probs=26.1
Q ss_pred ccCCCccCcccCCCCeee-cC----CCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTAF-EC----GHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pC----gH~~C~~C~~~ 339 (358)
.....|.+|.|+..|+-| .| .|.||.-|...
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSRe 301 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRE 301 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHH
Confidence 345899999999999988 77 47799999875
No 140
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=62.42 E-value=2.5 Score=49.08 Aligned_cols=45 Identities=27% Similarity=0.767 Sum_probs=31.1
Q ss_pred ccCCCccCcccCCCC--eee--cCCCCCchhhhhcC--------------CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKD--TAF--ECGHMSCIKCALRM--------------PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~--~v~--pCgH~~C~~C~~~~--------------~~CP~CR~~i~~~ 353 (358)
+....|.||+..... +.+ .|+|.|=..|..+. -.||+|..+|...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 345699999975433 333 99999655554432 3699999998753
No 141
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=61.81 E-value=5.8 Score=39.17 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=30.4
Q ss_pred cCCCccCcccCCCCeee----cCCCC--CchhhhhcC----CCCCCCccc
Q 018272 310 EAQRCCICCEDEKDTAF----ECGHM--SCIKCALRM----PQCPFCREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~----pCgH~--~C~~C~~~~----~~CP~CR~~ 349 (358)
....|+||-..+.-.++ .=|+. .|..|...+ ..||.|-..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45799999998876544 23444 799999988 479999863
No 142
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.96 E-value=3.9 Score=41.37 Aligned_cols=41 Identities=27% Similarity=0.555 Sum_probs=31.0
Q ss_pred cCCCccCcccCCCC----eeecCCCCCchhhhhcC-------CCCCCCcccc
Q 018272 310 EAQRCCICCEDEKD----TAFECGHMSCIKCALRM-------PQCPFCREEI 350 (358)
Q Consensus 310 ~~~~C~IC~~~~~~----~v~pCgH~~C~~C~~~~-------~~CP~CR~~i 350 (358)
.-..|||=.+...+ +-+.|||..|..=+.++ -+||.|-...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 34789987765443 33499999999999887 3699997654
No 143
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.55 E-value=87 Score=36.29 Aligned_cols=146 Identities=13% Similarity=0.190 Sum_probs=93.8
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (358)
-.+.|-+|-++|= .+..+| + |-..+..+|.-+.++ -+-..-|+........||+ +
T Consensus 226 KdiviLlD~SgSm--------~g~~~~-l-----------ak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~----~ 281 (1104)
T KOG2353|consen 226 KDIVILLDVSGSM--------SGLRLD-L-----------AKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFN----G 281 (1104)
T ss_pred cceEEEEeccccc--------cchhhH-H-----------HHHHHHHHHHhcccCCeEEEEeeccccCccccccc----C
Confidence 4667778877662 233344 3 444556677777777 7888888877555544432 3
Q ss_pred CCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc---------CCceEEEEEEeCCccCCcchhHHHHHHHH
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES---------GGLHHVLVIITSGQVATGSQQEQETIRSI 198 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~---------~~~Y~VLlIiTDG~i~d~~~~~~~t~~aI 198 (358)
+-+++--.-.+..++.+..++..|-+++.-..+.|-+.-.+. +.-+.+.++||||...+ .+++.+.-
T Consensus 282 ~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~----~~~If~~y 357 (1104)
T KOG2353|consen 282 TLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN----AKEIFEKY 357 (1104)
T ss_pred ceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc----HHHHHHhh
Confidence 444554455677788888888889999999999987764421 12478888999998877 55555544
Q ss_pred HHhc-CCCeEEEEEeeCCCCchhhh
Q 018272 199 VDAS-SYPLSIVLVGVGDGPWESIQ 222 (358)
Q Consensus 199 v~AS-~lPlSIiiVGVG~~~f~~m~ 222 (358)
..-. ..-++=..||-+..+|..++
T Consensus 358 n~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 358 NWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred ccCCCceEEEEEEecccccccccch
Confidence 4321 23445556666666666543
No 144
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=54.70 E-value=4.8 Score=39.67 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=35.4
Q ss_pred cCCCccCcccCCCCeee-cCCCC-CchhhhhcC-----CCCCCCccccCCee
Q 018272 310 EAQRCCICCEDEKDTAF-ECGHM-SCIKCALRM-----PQCPFCREEITTRR 354 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~-----~~CP~CR~~i~~~~ 354 (358)
....|.+|+++..-++. +|||. ||..|..+. ..|++|...+.+..
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~ 186 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAG 186 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhh
Confidence 34689999998877777 99999 999987654 56999987666543
No 145
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=53.06 E-value=4.8 Score=30.10 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=17.3
Q ss_pred cccCCCccCcccCCCCeee-----cCCCCCchhhhhc
Q 018272 308 VAEAQRCCICCEDEKDTAF-----ECGHMSCIKCALR 339 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~ 339 (358)
..+...|.+|...+.-..- .||+.+|..|...
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3567899999988743321 8999999999874
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=51.22 E-value=2.2 Score=32.92 Aligned_cols=38 Identities=24% Similarity=0.603 Sum_probs=18.0
Q ss_pred CCccCcccCCCCeeecCCCCCchhhhhcC---CCCCCCccccCC
Q 018272 312 QRCCICCEDEKDTAFECGHMSCIKCALRM---PQCPFCREEITT 352 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~pCgH~~C~~C~~~~---~~CP~CR~~i~~ 352 (358)
..|+.|.....+. . ||..|..|.... ..||-|.++++.
T Consensus 2 ~~CP~C~~~L~~~--~-~~~~C~~C~~~~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--G-GHYHCEACQKDYKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEE--T-TEEEETTT--EEEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEe--C-CEEECccccccceecccCCCcccHHHH
Confidence 4688887542221 2 666777777765 457777776653
No 147
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=6 Score=40.16 Aligned_cols=31 Identities=35% Similarity=0.868 Sum_probs=22.1
Q ss_pred cCCCccCcc-cCCCC-eee---cCCCCCchhhhhcC
Q 018272 310 EAQRCCICC-EDEKD-TAF---ECGHMSCIKCALRM 340 (358)
Q Consensus 310 ~~~~C~IC~-~~~~~-~v~---pCgH~~C~~C~~~~ 340 (358)
...+|.||+ +.... -.+ .|+|.||..|..+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHH
Confidence 356899999 33322 222 79999999999864
No 148
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=50.42 E-value=22 Score=33.57 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCC---CeEEEEEeeCCC--C---chhhhhccC
Q 018272 156 APMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSY---PLSIVLVGVGDG--P---WESIQKFHD 226 (358)
Q Consensus 156 apvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~l---PlSIiiVGVG~~--~---f~~m~~LD~ 226 (358)
-|++..+++.++++++.-|++=+++||+|+-- .+-....|.-|.+. ++.|-.+.=|.. | .+.+++|..
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh---~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~ 88 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH---IDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEE 88 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-----HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCcccc---HHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHH
Confidence 37899999999988888999999999999972 34444444444443 355666655533 3 345555543
No 149
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.44 E-value=9 Score=37.76 Aligned_cols=40 Identities=25% Similarity=0.547 Sum_probs=30.7
Q ss_pred cCCCccCcccCCCCeee-c----CCCC--CchhhhhcC----CCCCCCccc
Q 018272 310 EAQRCCICCEDEKDTAF-E----CGHM--SCIKCALRM----PQCPFCREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~-p----CgH~--~C~~C~~~~----~~CP~CR~~ 349 (358)
....|+||-..+.-.++ . =|+. .|..|...+ ..||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45699999998876554 3 3444 899999988 479999875
No 150
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=49.16 E-value=70 Score=31.11 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHhcCCceeec-cCCCh-----HHHHHHHHHHHHhcC--CceEEEEEEeCCcc--CCc-chhHHHHHH
Q 018272 128 SPCQGFEHVLECYRKNVPNVQYF-GPTSY-----APMVEAAVDIVEESG--GLHHVLVIITSGQV--ATG-SQQEQETIR 196 (358)
Q Consensus 128 ~~~~g~~gvl~~Y~~~l~~v~l~-gpt~f-----apvI~~a~~~~~~~~--~~Y~VLlIiTDG~i--~d~-~~~~~~t~~ 196 (358)
+.-.|+.+++..-++-.|.+.+. -|+.+ ++=|-.|++.+.+.+ ..|=|++| +-|+= .|+ ..|.++..+
T Consensus 23 ~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii-~RGGGs~eDL~~FN~e~var 101 (319)
T PF02601_consen 23 PTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIII-IRGGGSIEDLWAFNDEEVAR 101 (319)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEE-ecCCCChHHhcccChHHHHH
Confidence 34457888888877777755443 34432 333445555554432 24666444 55533 343 234567777
Q ss_pred HHHHhcCCCeEEEEEeeCCC-Cchhh
Q 018272 197 SIVDASSYPLSIVLVGVGDG-PWESI 221 (358)
Q Consensus 197 aIv~AS~lPlSIiiVGVG~~-~f~~m 221 (358)
+|. +|..| ||.|||=+ ||...
T Consensus 102 ai~-~~~~P---visaIGHe~D~ti~ 123 (319)
T PF02601_consen 102 AIA-ASPIP---VISAIGHETDFTIA 123 (319)
T ss_pred HHH-hCCCC---EEEecCCCCCchHH
Confidence 777 45678 78999943 55444
No 151
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.98 E-value=12 Score=23.27 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=9.1
Q ss_pred CccCcccCCCCee-e-c-CCCC
Q 018272 313 RCCICCEDEKDTA-F-E-CGHM 331 (358)
Q Consensus 313 ~C~IC~~~~~~~v-~-p-CgH~ 331 (358)
.|+-|.......+ + | |||.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 4556655443332 3 3 6654
No 152
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=46.73 E-value=48 Score=35.66 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=32.2
Q ss_pred CCceEEEEEEeCCccCCcc--------hhHHHHHHHHHHhcCC-CeEEEEEeeCCC
Q 018272 170 GGLHHVLVIITSGQVATGS--------QQEQETIRSIVDASSY-PLSIVLVGVGDG 216 (358)
Q Consensus 170 ~~~Y~VLlIiTDG~i~d~~--------~~~~~t~~aIv~AS~l-PlSIiiVGVG~~ 216 (358)
..+=-||++|+||...|-+ +-.+..++.|....+- |+-++-||||..
T Consensus 513 ~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 513 PEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred cccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeecccc
Confidence 4456899999999887621 1122245555556664 899999999985
No 153
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.16 E-value=8.2 Score=41.49 Aligned_cols=28 Identities=25% Similarity=0.772 Sum_probs=21.8
Q ss_pred CCCeee-cCCCCCchhhhhcC--CCCCCCccc
Q 018272 321 EKDTAF-ECGHMSCIKCALRM--PQCPFCREE 349 (358)
Q Consensus 321 ~~~~v~-pCgH~~C~~C~~~~--~~CP~CR~~ 349 (358)
...+++ -|||..|+.|++.+ ..|| |...
T Consensus 25 ~~~Pvsl~cghtic~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 25 RLEPVSLQCGHTICGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred hcCcccccccchHHHHHHHhHhhccCC-CCcc
Confidence 344555 99999999999988 7899 6543
No 154
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=45.91 E-value=8.6 Score=42.25 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=20.3
Q ss_pred cCCCCCchhhhhcC----------CCCCCCccccCC
Q 018272 327 ECGHMSCIKCALRM----------PQCPFCREEITT 352 (358)
Q Consensus 327 pCgH~~C~~C~~~~----------~~CP~CR~~i~~ 352 (358)
.|+|.+|..|+..+ ..|+.|..-|..
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 49999999999875 458888766543
No 155
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.49 E-value=13 Score=38.42 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=26.0
Q ss_pred ccCCCccCcccCCCC-eee-cCCCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKD-TAF-ECGHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~-~v~-pCgH~~C~~C~~~ 339 (358)
.....|-||++.... ++. .|||.+|..|...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~ 100 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTG 100 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHH
Confidence 445799999999886 555 9999999999885
No 156
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=43.94 E-value=6.1 Score=25.37 Aligned_cols=20 Identities=35% Similarity=0.865 Sum_probs=11.9
Q ss_pred CCCchhhhhcC--------CCCCCCccc
Q 018272 330 HMSCIKCALRM--------PQCPFCREE 349 (358)
Q Consensus 330 H~~C~~C~~~~--------~~CP~CR~~ 349 (358)
|.||..|...+ ..||.|...
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 67899998875 358888753
No 157
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.66 E-value=84 Score=30.55 Aligned_cols=67 Identities=12% Similarity=0.317 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEEE--EeCCccCCcchhHHHHHHHHHHhcCCC----eEEEEEeeCCCCchhhhhccCC
Q 018272 156 APMVEAAVDIVEESGGLHHVLVI--ITSGQVATGSQQEQETIRSIVDASSYP----LSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 156 apvI~~a~~~~~~~~~~Y~VLlI--iTDG~i~d~~~~~~~t~~aIv~AS~lP----lSIiiVGVG~~~f~~m~~LD~~ 227 (358)
+-.+++.+...++......|.++ ..-|.-. ..++++||..+...+ .-+||||=|+|.++.|--||+.
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A-----~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e 97 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPASVQGEGA-----AASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDE 97 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccccch-----HHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChH
Confidence 44566666666664433444443 3334322 679999999998765 9999999999999999999975
No 158
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=42.25 E-value=2.6e+02 Score=25.27 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=71.7
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc---cCC-CceeEEeecCCCCCC-------CC
Q 018272 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDG-DCIRCYGFGDDTTRD-------EG 119 (358)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~---yD~-d~ip~~GFGa~~~~~-------~~ 119 (358)
+++.||.+.|=.. ++- .. ..+.+.|++.+-.+++. ..+ |.+-++.||...+.. .+
T Consensus 2 ~vflID~s~sM~~-----------~~~--~~-~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~ 67 (224)
T PF03731_consen 2 TVFLIDVSPSMFE-----------PSS--ES-ESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYEN 67 (224)
T ss_dssp EEEEEE-SCGGGS------------BT--TC-S-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STT
T ss_pred EEEEEECCHHHCC-----------CCC--Cc-chhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCc
Confidence 4688999866431 111 11 12788888888877664 233 499999999876543 34
Q ss_pred ccccCCCCCCCCCHHHHHHHHHhcCCc-------eeeccCCChHHHHHHHHHHHHh--cCCc--eEEEEEEeCCccCC-c
Q 018272 120 VFSFQENDSPCQGFEHVLECYRKNVPN-------VQYFGPTSYAPMVEAAVDIVEE--SGGL--HHVLVIITSGQVAT-G 187 (358)
Q Consensus 120 ~f~~~~~~~~~~g~~gvl~~Y~~~l~~-------v~l~gpt~fapvI~~a~~~~~~--~~~~--Y~VLlIiTDG~i~d-~ 187 (358)
++.+.+-++ -+++.+.+. .+.+.. -.-....++..++-.+..+.++ ...+ .--+++|||+.--. .
T Consensus 68 i~~l~~l~~--~~~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~ 144 (224)
T PF03731_consen 68 IFVLQPLDP--PSAERLKEL-EELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHED 144 (224)
T ss_dssp EEEEEECC----BHHHHHHH-HTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-
T ss_pred eEEeecCCc--cCHHHHHHH-HHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCC
Confidence 554442211 133333221 111111 0012345677777778777654 2222 24456779873221 0
Q ss_pred chhHHHHHHH--HHHhcCCCeEEEEEee
Q 018272 188 SQQEQETIRS--IVDASSYPLSIVLVGV 213 (358)
Q Consensus 188 ~~~~~~t~~a--Iv~AS~lPlSIiiVGV 213 (358)
..+.+.+++. ..+....-+.+..+.+
T Consensus 145 ~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 145 DDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHHHHhhccccchhcCcceeEeec
Confidence 1124455555 5556667777777777
No 159
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.18 E-value=8.8 Score=33.02 Aligned_cols=24 Identities=33% Similarity=0.712 Sum_probs=19.1
Q ss_pred CchhhhhcC-CCCCCCccccCCeee
Q 018272 332 SCIKCALRM-PQCPFCREEITTRRR 355 (358)
Q Consensus 332 ~C~~C~~~~-~~CP~CR~~i~~~~~ 355 (358)
||..|...- ..||+|..+|.....
T Consensus 30 fcskcgeati~qcp~csasirgd~~ 54 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYY 54 (160)
T ss_pred HHhhhchHHHhcCCccCCcccccce
Confidence 788888754 789999999987543
No 160
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.03 E-value=8.6 Score=34.19 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=22.2
Q ss_pred CCCchhhhhcC-CCCCCCccccCCeeec
Q 018272 330 HMSCIKCALRM-PQCPFCREEITTRRRV 356 (358)
Q Consensus 330 H~~C~~C~~~~-~~CP~CR~~i~~~~~~ 356 (358)
+.||..|..+. ..||.|..+|....++
T Consensus 28 ~~fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 28 EKFCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHHHhhHHHHHHCcCCCCCCCCceec
Confidence 34999999976 8899999999986543
No 161
>PLN02189 cellulose synthase
Probab=41.41 E-value=17 Score=41.37 Aligned_cols=42 Identities=31% Similarity=0.721 Sum_probs=30.3
Q ss_pred CCCccCcccCCC----Ceee----cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 311 AQRCCICCEDEK----DTAF----ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~----~~v~----pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
...|.||-|..- .-.| -||--+|+.|.+-- +.||.|+....+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 348999998732 2234 46666999999743 679999987763
No 162
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.73 E-value=13 Score=35.50 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.5
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhc
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALR 339 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~ 339 (358)
.+++...|+.|+...+++++ |=||.||++|+..
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe 72 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILE 72 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHH
Confidence 45677899999999999999 9999999999874
No 163
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.47 E-value=25 Score=27.81 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=17.2
Q ss_pred cCCCccCcccCCC----Ceee----cCCCCCchhhhhc-----CCCCCCCccccCC
Q 018272 310 EAQRCCICCEDEK----DTAF----ECGHMSCIKCALR-----MPQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~~~----~~v~----pCgH~~C~~C~~~-----~~~CP~CR~~i~~ 352 (358)
+...|.||-+..- --+| .|+-.+|+.|..- .+.||.|+.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3468999998532 1234 5666689999872 2789999977654
No 164
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=40.29 E-value=16 Score=36.23 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=18.2
Q ss_pred CCeeecCCCC---Cchhhhh----cCCCCCCCcccc
Q 018272 322 KDTAFECGHM---SCIKCAL----RMPQCPFCREEI 350 (358)
Q Consensus 322 ~~~v~pCgH~---~C~~C~~----~~~~CP~CR~~i 350 (358)
..+.+.|||. -=+-|.. +-.+||+||..=
T Consensus 316 P~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 316 PWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred CeEEEeccccccccccccccccCcccCcCCeeeeec
Confidence 3455699998 2223333 237899999743
No 165
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=39.37 E-value=1.2e+02 Score=29.70 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=78.3
Q ss_pred CCCccchhhhhccCCCceeeceEEEeccCCCCC---CCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeE
Q 018272 31 DDELPEAPAGVRDPSKVRYKLIFGIDFTASNLW---AGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRC 107 (358)
Q Consensus 31 ~~~~~~~~~~l~~~gl~~~~~~vaIDfT~SN~~---~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~ 107 (358)
..-|+-|..|++++|++- .+.+|+|+.+|--+ .|+..+...+... ++...=.=.+-|.-..+++.. +|+
T Consensus 80 eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~--~~~~~~s~delid~y~~li~~-----YPI 151 (295)
T PF00113_consen 80 EEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEK--DPSRYKSSDELIDYYKDLIKK-----YPI 151 (295)
T ss_dssp HHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSS--TGGGEEEHHHHHHHHHHHHHH-----S-E
T ss_pred hHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeeccccc--ccccccCHHHHHHHHHHHHHh-----cCe
Confidence 456788899999999987 99999999999764 2221111111000 000000112333334444443 455
Q ss_pred EeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCc
Q 018272 108 YGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATG 187 (358)
Q Consensus 108 ~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~ 187 (358)
...-+ +|.++ ..+++.+.=++.-.++++-|--.|.--.+.+.+-.++.. .=.++|-=.||.-
T Consensus 152 vsIED---------pf~ed-----D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~---~na~llK~NQigT- 213 (295)
T PF00113_consen 152 VSIED---------PFDED-----DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKA---CNALLLKPNQIGT- 213 (295)
T ss_dssp EEEES---------SS-TT------HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT-----SEEEE-HHHHSS-
T ss_pred EEEEc---------ccccc-----chHHHHHHHHhhhcceeeecccccccchhhhhccchhhh---ccchhhhhhhhHH-
Confidence 54433 22222 466665555555567888887555433333333233221 1124456667776
Q ss_pred chhHHHHHHHHHHhcCCCeEEEEE
Q 018272 188 SQQEQETIRSIVDASSYPLSIVLV 211 (358)
Q Consensus 188 ~~~~~~t~~aIv~AS~lPlSIiiV 211 (358)
.-||++++.-|...-..+|+=
T Consensus 214 ---vte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 214 ---VTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp ---HHHHHHHHHHHHHTT-EEEEE
T ss_pred ---HHHHHHHHHHHHHCCceeecc
Confidence 789999999998877776663
No 166
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.98 E-value=10 Score=37.07 Aligned_cols=20 Identities=35% Similarity=0.961 Sum_probs=14.9
Q ss_pred CchhhhhcC-----------------CCCCCCccccC
Q 018272 332 SCIKCALRM-----------------PQCPFCREEIT 351 (358)
Q Consensus 332 ~C~~C~~~~-----------------~~CP~CR~~i~ 351 (358)
-|++|+.++ ..||+||+.+-
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 477887754 36999999764
No 167
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=38.44 E-value=15 Score=35.83 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=17.6
Q ss_pred CCCCchhhhhcC--------CCCCCCccccCC
Q 018272 329 GHMSCIKCALRM--------PQCPFCREEITT 352 (358)
Q Consensus 329 gH~~C~~C~~~~--------~~CP~CR~~i~~ 352 (358)
.|.||..|..++ ..||.|+...-.
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fP 141 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEHFP 141 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCccCC
Confidence 477888888877 358888876544
No 168
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=38.20 E-value=17 Score=32.53 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=30.5
Q ss_pred ccCCCccCcccCCCCeeecCCCC-----CchhhhhcC------CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAFECGHM-----SCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~pCgH~-----~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
.....|-||.+...+-..||.-. +=.+|..++ ..|++|+.+..-
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45679999998865432377543 345788876 579999987643
No 169
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=36.78 E-value=5.6 Score=45.76 Aligned_cols=44 Identities=25% Similarity=0.656 Sum_probs=34.6
Q ss_pred cccCCCccCcccCCCC--eeecCCCCCchhhhhcC----CCCCCCccccC
Q 018272 308 VAEAQRCCICCEDEKD--TAFECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~--~v~pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
+.+...|.||.+-.++ ..+.|||.+|..|...+ ..||+|..-+.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 3455699999998775 34499999999999877 67999985443
No 170
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=36.27 E-value=17 Score=39.40 Aligned_cols=43 Identities=14% Similarity=0.402 Sum_probs=28.9
Q ss_pred ccccCCCccCcccCCCCeeecCCCCCch--hhhhcC-----------CCCCCCccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAFECGHMSCI--KCALRM-----------PQCPFCREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~pCgH~~C~--~C~~~~-----------~~CP~CR~~i~~ 352 (358)
++.-...|+++. +.+.+||.+..|. .|.... |.||+|.+.+.-
T Consensus 302 ~~~vSL~CPl~~---~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 302 SLRVSLNCPLSK---MRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred cceeEecCCccc---ceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 344568999999 5555566666665 554432 789999887653
No 171
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.03 E-value=77 Score=33.50 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEe---eCCCCchhhhhccCCCCC
Q 018272 154 SYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVG---VGDGPWESIQKFHDKIPA 230 (358)
Q Consensus 154 ~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVG---VG~~~f~~m~~LD~~~~~ 230 (358)
.-+-|-++|++++++. .|-|.||=|-|.-+|-.+-|....+.|. .+-|==|++|| ||+..-+-+++|...+..
T Consensus 450 d~a~vak~AI~~a~~~--gfDVvLiDTAGR~~~~~~lm~~l~k~~~--~~~pd~i~~vgealvg~dsv~q~~~fn~al~~ 525 (587)
T KOG0781|consen 450 DAAGVAKEAIQEARNQ--GFDVVLIDTAGRMHNNAPLMTSLAKLIK--VNKPDLILFVGEALVGNDSVDQLKKFNRALAD 525 (587)
T ss_pred ChHHHHHHHHHHHHhc--CCCEEEEeccccccCChhHHHHHHHHHh--cCCCceEEEehhhhhCcHHHHHHHHHHHHHhc
Confidence 3567888999999875 4899999999999883222233333332 25788999999 999999999998754322
Q ss_pred c-ccceeEeeecccccc
Q 018272 231 L-QFDNFHFVNFTAIMS 246 (358)
Q Consensus 231 r-~rDnvqFV~f~~~~~ 246 (358)
+ .--+..++-+.++..
T Consensus 526 ~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 526 HSTPRLIDGILLTKFDT 542 (587)
T ss_pred CCCccccceEEEEeccc
Confidence 1 123555666666644
No 172
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=35.36 E-value=16 Score=21.96 Aligned_cols=17 Identities=29% Similarity=0.903 Sum_probs=8.3
Q ss_pred chhhhhcC----CCCCCCccc
Q 018272 333 CIKCALRM----PQCPFCREE 349 (358)
Q Consensus 333 C~~C~~~~----~~CP~CR~~ 349 (358)
|..|...+ ..||.|-.+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 44555444 345555443
No 173
>PF15039 DUF4530: Domain of unknown function (DUF4530)
Probab=34.58 E-value=42 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcccccccCCCCccCCCCCCCCCCC
Q 018272 263 INASMAADELGIMSRMTGRAKKITPKPPPVLSSH 296 (358)
Q Consensus 263 ~Eqy~~~~~~~~l~~~~~~~~~~~p~PpP~~~~~ 296 (358)
||+|+..+..|++...-+..+++...+||...+.
T Consensus 1 MElW~QL~QaGLvppgLGppp~ALr~vpp~~~pg 34 (111)
T PF15039_consen 1 MELWRQLRQAGLVPPGLGPPPRALRGVPPVERPG 34 (111)
T ss_pred ChHHHHHHHcCCCCCCCCCCcHHHccCCCCCCCc
Confidence 5789999999999777666666555555554444
No 174
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=34.45 E-value=1.3e+02 Score=30.75 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCceEEEEE--EeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCC
Q 018272 158 MVEAAVDIVEESGGLHHVLVI--ITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 158 vI~~a~~~~~~~~~~Y~VLlI--iTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
.++++++.+++......|.++ ..-|.-. ..++++||..+.....=+||||=|+|.++.|--||+.
T Consensus 148 a~~D~~~~~~~r~p~~~~~~~~~~vQG~~A-----~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e 214 (438)
T PRK00286 148 AIRDILTVLRRRFPLVEVIIYPTLVQGEGA-----AASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDE 214 (438)
T ss_pred HHHHHHHHHHhcCCCCeEEEecCcCcCccH-----HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcH
Confidence 555555555554322333332 2233211 4566777766666556677777777777777777654
No 175
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.17 E-value=13 Score=41.28 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCccCcccCCCC-eee-cCCCCCchhhhhc-CCCCCCCccccCCee
Q 018272 312 QRCCICCEDEKD-TAF-ECGHMSCIKCALR-MPQCPFCREEITTRR 354 (358)
Q Consensus 312 ~~C~IC~~~~~~-~v~-pCgH~~C~~C~~~-~~~CP~CR~~i~~~~ 354 (358)
..|..|--..-- +|. .|||.+=..|..+ ..+||-|+.......
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRGVM 886 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhhhH
Confidence 489999865433 444 9999988888874 478999998665543
No 176
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=30.95 E-value=37 Score=24.61 Aligned_cols=21 Identities=33% Similarity=0.989 Sum_probs=13.4
Q ss_pred cCCCCCchhhhhcC----CCCCCCc
Q 018272 327 ECGHMSCIKCALRM----PQCPFCR 347 (358)
Q Consensus 327 pCgH~~C~~C~~~~----~~CP~CR 347 (358)
.|++.||..|-.-+ ..||.|-
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 68899999998754 6799984
No 177
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.26 E-value=32 Score=28.51 Aligned_cols=38 Identities=26% Similarity=0.543 Sum_probs=24.1
Q ss_pred CCCccCcccCCCCeeecC------------CCCCchhhhhcC-------------CCCCCCcc
Q 018272 311 AQRCCICCEDEKDTAFEC------------GHMSCIKCALRM-------------PQCPFCRE 348 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~pC------------gH~~C~~C~~~~-------------~~CP~CR~ 348 (358)
...|-.|.....+....| .=.||..|+.+- +.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 356777776555543334 222889996632 67999986
No 178
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.18 E-value=22 Score=26.33 Aligned_cols=28 Identities=36% Similarity=0.825 Sum_probs=22.5
Q ss_pred ecCCCC--CchhhhhcC--CCCCCCccccCCe
Q 018272 326 FECGHM--SCIKCALRM--PQCPFCREEITTR 353 (358)
Q Consensus 326 ~pCgH~--~C~~C~~~~--~~CP~CR~~i~~~ 353 (358)
+-|-+- ||..|+..+ ..||.|...+..+
T Consensus 23 ~ICSfECTFC~~C~e~~l~~~CPNCgGelv~R 54 (57)
T PF06906_consen 23 YICSFECTFCADCAETMLNGVCPNCGGELVRR 54 (57)
T ss_pred eEEeEeCcccHHHHHHHhcCcCcCCCCccccC
Confidence 356655 999999988 7899999887664
No 179
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.17 E-value=2.3e+02 Score=23.23 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=45.6
Q ss_pred ccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccCCCC
Q 018272 150 FGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHDKIP 229 (358)
Q Consensus 150 ~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~~~~ 229 (358)
.+|+.....|.+.....-++... +++-+|.|.- =|||=|-+.||+-+++.|-.+.
T Consensus 33 e~~~tvgdll~yi~~~~ie~r~~----lFi~~gsvrp---------------------Gii~lINd~DWEllekedy~le 87 (101)
T KOG4146|consen 33 ESPATVGDLLDYIFGKYIETRDS----LFIHHGSVRP---------------------GIIVLINDMDWELLEKEDYPLE 87 (101)
T ss_pred CCcccHHHHHHHHHHHHhcCCcc----eEeeCCcCcC---------------------cEEEEEeccchhhhcccccCcc
Confidence 36888888888877644333333 5567776654 1677789999999999997654
Q ss_pred CcccceeEeee
Q 018272 230 ALQFDNFHFVN 240 (358)
Q Consensus 230 ~r~rDnvqFV~ 240 (358)
.. |.+-|+.
T Consensus 88 dg--D~ivfiS 96 (101)
T KOG4146|consen 88 DG--DHIVFIS 96 (101)
T ss_pred cC--CEEEEEE
Confidence 43 8888875
No 180
>PLN02436 cellulose synthase A
Probab=29.71 E-value=30 Score=39.52 Aligned_cols=41 Identities=32% Similarity=0.741 Sum_probs=30.0
Q ss_pred CCccCcccCC---CC-eee----cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 312 QRCCICCEDE---KD-TAF----ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 312 ~~C~IC~~~~---~~-~v~----pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
..|.||-|.. .+ -+| -||--+|+.|.+-- +.||.|+....+
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 4999999863 23 134 56666999999743 679999987663
No 181
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=29.12 E-value=3.8e+02 Score=24.38 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=41.2
Q ss_pred Cceeecc--CCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhh
Q 018272 145 PNVQYFG--PTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQ 222 (358)
Q Consensus 145 ~~v~l~g--pt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~ 222 (358)
..|.++| |+.-.+.+.++++.+++.+ .. +.|.|.|-... ..+..+.+.+. +.++.|++-..+-+..+
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g--~~-~~i~TNG~~~~----~~~~~~~ll~~----~d~v~isl~~~~~~~~~ 135 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELG--IH-TCLDTSGFLGG----CTEAADELLEY----TDLVLLDIKHFNPEKYK 135 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCC--CC-EEEEcCCCCCc----cHHHHHHHHHh----CCEEEEeCCCCCHHHHH
Confidence 3577775 7777777777888877653 22 35679995543 23444444443 34677777554444444
Q ss_pred hcc
Q 018272 223 KFH 225 (358)
Q Consensus 223 ~LD 225 (358)
++.
T Consensus 136 ~~~ 138 (235)
T TIGR02493 136 KLT 138 (235)
T ss_pred HHH
Confidence 443
No 182
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=28.76 E-value=32 Score=35.95 Aligned_cols=33 Identities=21% Similarity=0.706 Sum_probs=24.9
Q ss_pred CCCCCccccccCCCccCcccCCCCeeecCCCC---Cchhhh
Q 018272 300 QMGPVSAEVAEAQRCCICCEDEKDTAFECGHM---SCIKCA 337 (358)
Q Consensus 300 ~~~~~~~~~~~~~~C~IC~~~~~~~v~pCgH~---~C~~C~ 337 (358)
.++|+..++..+.+|.||-|+.. |-|. .|..|-
T Consensus 258 ~s~psrs~~~~e~~CAVCgDnAa-----CqHYGvRTCEGCK 293 (605)
T KOG4217|consen 258 PSPPSRSSLSAEGLCAVCGDNAA-----CQHYGVRTCEGCK 293 (605)
T ss_pred CCCccccCCCccceeeecCChHH-----hhhcCccccccch
Confidence 44556667777899999998764 8887 687774
No 183
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=28.63 E-value=57 Score=38.23 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=54.3
Q ss_pred HHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCC-----ChHHHHHHHH
Q 018272 90 IYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPT-----SYAPMVEAAV 163 (358)
Q Consensus 90 I~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt-----~fapvI~~a~ 163 (358)
|+.+...++..-.. .+|+|||-... +-+...++.+-..|-+.+++||+.||- .|.-.|-+++
T Consensus 2132 IEG~tt~l~~la~rle~PaYglQ~T~------------~vP~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~m 2199 (2376)
T KOG1202|consen 2132 IEGFTTALESLASRLEIPAYGLQCTE------------AVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEM 2199 (2376)
T ss_pred cccchHHHHHHHhhcCCcchhhhccc------------cCCcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHH
Confidence 34444455555556 79999996531 122247899999999999999999996 4555555554
Q ss_pred HHH-HhcCCceEEEEEEeCCccCC
Q 018272 164 DIV-EESGGLHHVLVIITSGQVAT 186 (358)
Q Consensus 164 ~~~-~~~~~~Y~VLlIiTDG~i~d 186 (358)
.-. +++ +.-.-||+-||.-+-
T Consensus 2200 a~~Lqe~--~~~~~lillDGspty 2221 (2376)
T KOG1202|consen 2200 ASQLQEQ--QSPAPLILLDGSPTY 2221 (2376)
T ss_pred HHHHHhh--cCCCcEEEecCchHH
Confidence 433 332 223338889998765
No 184
>PLN02400 cellulose synthase
Probab=28.60 E-value=29 Score=39.75 Aligned_cols=41 Identities=32% Similarity=0.710 Sum_probs=29.4
Q ss_pred CCccCcccCC---CC-eee----cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 312 QRCCICCEDE---KD-TAF----ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 312 ~~C~IC~~~~---~~-~v~----pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
..|.||-|.. .+ -+| .||--+|+.|.+-= +.||.|+....+
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 4999999863 22 123 66666999999632 679999987663
No 185
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=28.07 E-value=26 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.713 Sum_probs=23.9
Q ss_pred CccCcccCCCCeeecCCCCCchhhhhcC
Q 018272 313 RCCICCEDEKDTAFECGHMSCIKCALRM 340 (358)
Q Consensus 313 ~C~IC~~~~~~~v~pCgH~~C~~C~~~~ 340 (358)
.|.||-....+...-.|+..|..|-.++
T Consensus 1 ~CiiC~~~~~~GI~I~~~fIC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHIYGKFICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEEECeEehHHHHHHh
Confidence 4889998888877788999999998876
No 186
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.05 E-value=1.9e+02 Score=29.85 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCceEEEE--EEeCCccCCcchhHHHHHHHHHHhcCCC-eEEEEEeeCCCCchhhhhccCC
Q 018272 157 PMVEAAVDIVEESGGLHHVLV--IITSGQVATGSQQEQETIRSIVDASSYP-LSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 157 pvI~~a~~~~~~~~~~Y~VLl--IiTDG~i~d~~~~~~~t~~aIv~AS~lP-lSIiiVGVG~~~f~~m~~LD~~ 227 (358)
-.|++++...++......|.+ ...-|.-. ..++++||..+...+ .=+||||=|+|..+.|--||+.
T Consensus 141 aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a-----~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e 209 (432)
T TIGR00237 141 AALADILHILKRRDPSLKVVIYPTLVQGEGA-----VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDE 209 (432)
T ss_pred HHHHHHHHHHHhhCCCceEEEecccccCccH-----HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcH
Confidence 466777666665433233433 33344322 467788887777654 6788888888888888888874
No 187
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.99 E-value=7.6 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.619 Sum_probs=26.1
Q ss_pred cCCCccCcccCC---CC-eee--cCCCCCchhhhhcC-----CCCCCCccc
Q 018272 310 EAQRCCICCEDE---KD-TAF--ECGHMSCIKCALRM-----PQCPFCREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~---~~-~v~--pCgH~~C~~C~~~~-----~~CP~CR~~ 349 (358)
+...|..|.... .+ ... .|+|.+|..|.... +.|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 345899997643 11 223 89999999998754 458888753
No 188
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.44 E-value=33 Score=27.83 Aligned_cols=38 Identities=26% Similarity=0.667 Sum_probs=29.6
Q ss_pred CCCccCcccCCCCeeecCCCCCchhhhhcCCCCCCCccccCC
Q 018272 311 AQRCCICCEDEKDTAFECGHMSCIKCALRMPQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~pCgH~~C~~C~~~~~~CP~CR~~i~~ 352 (358)
...|.+|-.... .=||.+|..|+-+-..|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~----q~g~~YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVH----QPGAKYCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Cccccccccccc----cCCCccChhhhcccCcccccCCeecc
Confidence 357999974322 44788999999999999999988743
No 189
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=27.36 E-value=25 Score=35.28 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=15.5
Q ss_pred CCCCchhhhhcC----CCCCCCcc
Q 018272 329 GHMSCIKCALRM----PQCPFCRE 348 (358)
Q Consensus 329 gH~~C~~C~~~~----~~CP~CR~ 348 (358)
-|..|..|.-+. |+||.||.
T Consensus 353 ~~YRC~~CGF~a~~l~W~CPsC~~ 376 (389)
T COG2956 353 PRYRCQNCGFTAHTLYWHCPSCRA 376 (389)
T ss_pred CCceecccCCcceeeeeeCCCccc
Confidence 355788887764 88999986
No 190
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=26.81 E-value=14 Score=36.08 Aligned_cols=42 Identities=29% Similarity=0.703 Sum_probs=29.3
Q ss_pred ccCCCccCccc-CCCCeee-----cCCCCCchhhhhcC-----------CCCCCCcccc
Q 018272 309 AEAQRCCICCE-DEKDTAF-----ECGHMSCIKCALRM-----------PQCPFCREEI 350 (358)
Q Consensus 309 ~~~~~C~IC~~-~~~~~v~-----pCgH~~C~~C~~~~-----------~~CP~CR~~i 350 (358)
++...|.+|.. .+....- .||+.+|..|..+. ..|+.|=...
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 35679999998 3333332 89999999998862 3577775544
No 191
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.67 E-value=1.8e+02 Score=30.32 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCC-eEEEEEeeCCCCchhhhhccCC
Q 018272 156 APMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYP-LSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 156 apvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lP-lSIiiVGVG~~~f~~m~~LD~~ 227 (358)
+-+|++++..+++.-....|+++=|-=|=.+ .-.+++++|..|...+ +-+||||=|+|.-+.+=-|.++
T Consensus 146 gAairDIl~~~~rR~P~~~viv~pt~VQG~~---A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE 215 (440)
T COG1570 146 GAALRDILHTLSRRFPSVEVIVYPTLVQGEG---AAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDE 215 (440)
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEeccccCCC---cHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChH
Confidence 4588888888876544466666544333333 1689999999999887 9999999999999888888775
No 193
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.16 E-value=15 Score=37.35 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=25.9
Q ss_pred CChHHHHHHHHhhcccccCCC--ceeEEeecCC
Q 018272 83 LNPYQEVIYITGKELVLFDGD--CIRCYGFGDD 113 (358)
Q Consensus 83 ~N~Yq~aI~~ig~vl~~yD~d--~ip~~GFGa~ 113 (358)
.|+|++||..-..+|...|+- +|-+||.-..
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~ 51 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVT 51 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 689999999999999999887 8888877654
No 194
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.86 E-value=32 Score=39.42 Aligned_cols=41 Identities=29% Similarity=0.699 Sum_probs=29.3
Q ss_pred CCCccCcccCC---CC-eee----cCCCCCchhhhhcC-----CCCCCCccccC
Q 018272 311 AQRCCICCEDE---KD-TAF----ECGHMSCIKCALRM-----PQCPFCREEIT 351 (358)
Q Consensus 311 ~~~C~IC~~~~---~~-~v~----pCgH~~C~~C~~~~-----~~CP~CR~~i~ 351 (358)
...|.||-|.. .+ -.| -||--+|+.|.+-= +.||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34999999863 22 123 56666999998632 67999998765
No 195
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.79 E-value=45 Score=23.61 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=20.2
Q ss_pred CCccCcccCCCCee-----ecCCCCCchhhhhcC
Q 018272 312 QRCCICCEDEKDTA-----FECGHMSCIKCALRM 340 (358)
Q Consensus 312 ~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~~ 340 (358)
..|.+|-....... ..||+.+|..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 46778875443322 289999999998864
No 196
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=25.78 E-value=2.9e+02 Score=28.39 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=39.2
Q ss_pred CCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCC
Q 018272 144 VPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 144 l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~ 216 (358)
+-.|++.. -++.-+.+++.....+.+.+- +.+|.+||..+ +.+++.+. +...| +..-|||..
T Consensus 264 ~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld------e~~i~~l~-~~g~~--~d~FGvGT~ 325 (405)
T COG1488 264 LDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD------EKIIALLR-AFGAR--NDAFGVGTN 325 (405)
T ss_pred ceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch------HHHHHHHH-HhCCC--ccEeccchh
Confidence 44455543 566677777777666655433 88999999653 34444444 46666 777888864
No 197
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.75 E-value=29 Score=22.93 Aligned_cols=15 Identities=20% Similarity=0.674 Sum_probs=10.3
Q ss_pred cCCCCCCCccccCCe
Q 018272 339 RMPQCPFCREEITTR 353 (358)
Q Consensus 339 ~~~~CP~CR~~i~~~ 353 (358)
....||.|...++++
T Consensus 25 ~~~~CP~Cg~~~~r~ 39 (41)
T smart00834 25 PLATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCCCcceec
Confidence 346799999865443
No 198
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.67 E-value=56 Score=38.10 Aligned_cols=42 Identities=29% Similarity=0.721 Sum_probs=31.1
Q ss_pred CCCccCcccCCCCeee-c-CCCC-----CchhhhhcC-------CCCCCCccccCCe
Q 018272 311 AQRCCICCEDEKDTAF-E-CGHM-----SCIKCALRM-------PQCPFCREEITTR 353 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-p-CgH~-----~C~~C~~~~-------~~CP~CR~~i~~~ 353 (358)
...|+-|-..... .+ | ||+. .|..|.... ..||.|..+....
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 3799999975333 36 4 9977 499998875 2799999877663
No 199
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.52 E-value=31 Score=34.21 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=28.3
Q ss_pred CCCccCcccCCCC---ee-ecCCCCCchhhhhcC-------CCCCCCccc
Q 018272 311 AQRCCICCEDEKD---TA-FECGHMSCIKCALRM-------PQCPFCREE 349 (358)
Q Consensus 311 ~~~C~IC~~~~~~---~v-~pCgH~~C~~C~~~~-------~~CP~CR~~ 349 (358)
-..|||=.+..++ ++ +.|||..-.+-+.++ .+||.|...
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4688886664433 34 499999888887776 469999764
No 200
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=24.19 E-value=3e+02 Score=26.23 Aligned_cols=169 Identities=18% Similarity=0.311 Sum_probs=97.4
Q ss_pred CCCCCCccchhhhhccCCCc-----eeeceEEEeccC--------CCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHh
Q 018272 28 PRFDDELPEAPAGVRDPSKV-----RYKLIFGIDFTA--------SNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITG 94 (358)
Q Consensus 28 ~~~~~~~~~~~~~l~~~gl~-----~~~~~vaIDfT~--------SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig 94 (358)
...|+|-.+.-+.|..-|.+ .+++|=|+.|-. ||... +- -=++.|=|. .|+|++.+++|-
T Consensus 56 gi~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~-~l-kig~PlLy~-----k~DYe~~v~aik 128 (265)
T COG4822 56 GIDFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFK-RL-KIGRPLLYY-----KNDYEICVEAIK 128 (265)
T ss_pred CcccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhh-ee-ecCCceeec-----hhhHHHHHHHHH
Confidence 34567777777777776765 355666665542 22110 00 002223333 599999999999
Q ss_pred hcccccCCC-ceeEEeecCCCCCCCCccccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCc-
Q 018272 95 KELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGL- 172 (358)
Q Consensus 95 ~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~- 172 (358)
..+-+...| ..-..|=|..++-.. . -.-++.++..|.- .+|.+ +-+.=-|-+..++++.++++-+
T Consensus 129 ~~~ppl~k~e~~vlmgHGt~h~s~~-~---------YacLd~~~~~~~f--~~v~v-~~ve~yP~~d~vi~~l~~~~~~~ 195 (265)
T COG4822 129 DQIPPLNKDEILVLMGHGTDHHSNA-A---------YACLDHVLDEYGF--DNVFV-AAVEGYPLVDTVIEYLRKNGIKE 195 (265)
T ss_pred HhcCCcCcCeEEEEEecCCCccHHH-H---------HHHHHHHHHhcCC--CceEE-EEecCCCcHHHHHHHHHHcCCce
Confidence 999888888 666678887643111 0 0123444443321 11111 1122245667777777766321
Q ss_pred -eEEEEEEeCC--ccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCC
Q 018272 173 -HHVLVIITSG--QVATGSQQEQETIRSIVDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 173 -Y~VLlIiTDG--~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~ 216 (358)
-.+=|.++-| .+.||.-|-+++-+.|-++..++.-...=|+|.-
T Consensus 196 v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~~l~GLGE~ 242 (265)
T COG4822 196 VHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEVYLHGLGEN 242 (265)
T ss_pred EEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEEEeecCCCc
Confidence 2222344555 6777322223888888889999999999999964
No 201
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.75 E-value=73 Score=31.79 Aligned_cols=50 Identities=24% Similarity=0.219 Sum_probs=32.3
Q ss_pred ccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCC
Q 018272 150 FGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGD 215 (358)
Q Consensus 150 ~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~ 215 (358)
.|-|.|.||++.. ++... =.+|+.+|||--+- .. .+-.-|+=|+.-|-|.
T Consensus 325 gG~Tdf~Pvfeyl----ek~~~-~~~lIyfTDG~gd~-----p~------~~r~~~~lwVl~~~~~ 374 (396)
T COG3864 325 GGGTDFSPVFEYL----EKNRM-ECFLIYFTDGMGDQ-----PL------VFRPKVLLWVLTGAKG 374 (396)
T ss_pred CCCccccHHHHHH----Hhhcc-cceEEEEccCCCCc-----cc------ccCCcceEEEecCCcc
Confidence 5779999999865 33322 27888999996543 11 1234467888877553
No 202
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.66 E-value=27 Score=22.60 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=10.2
Q ss_pred CCCCCCCccccCCee
Q 018272 340 MPQCPFCREEITTRR 354 (358)
Q Consensus 340 ~~~CP~CR~~i~~~~ 354 (358)
-..||+|..+-..+.
T Consensus 17 ~~~CP~Cg~~~~~F~ 31 (33)
T cd00350 17 PWVCPVCGAPKDKFE 31 (33)
T ss_pred CCcCcCCCCcHHHcE
Confidence 367999987655443
No 203
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=33 Score=31.33 Aligned_cols=45 Identities=27% Similarity=0.655 Sum_probs=30.7
Q ss_pred ccCCCccCcccCCCCeee--------cCCCCCchhhhhcC---------------CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKDTAF--------ECGHMSCIKCALRM---------------PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--------pCgH~~C~~C~~~~---------------~~CP~CR~~i~~~ 353 (358)
++..-|-||+....+.+. .||..|=.-|+..| ..||.|-.+|.-.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 345789999987766443 46655555566543 4699999998754
No 204
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=23.28 E-value=19 Score=34.98 Aligned_cols=40 Identities=30% Similarity=0.610 Sum_probs=28.3
Q ss_pred ccCcccCCCC----ee-ecCCCCCchhhhhcC----CCCCCCccccCCee
Q 018272 314 CCICCEDEKD----TA-FECGHMSCIKCALRM----PQCPFCREEITTRR 354 (358)
Q Consensus 314 C~IC~~~~~~----~v-~pCgH~~C~~C~~~~----~~CP~CR~~i~~~~ 354 (358)
|+||.+.... +. ++|||..=..|.+.+ -.||+|.. +....
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHH
Confidence 9999985333 33 399999657777765 46999998 54443
No 205
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=23.23 E-value=87 Score=29.80 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=28.2
Q ss_pred cCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeE
Q 018272 169 SGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLS 207 (358)
Q Consensus 169 ~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlS 207 (358)
.+.+|+|.+|+-||+.+ +-++-+|+..|+++-|.
T Consensus 138 ~~~~~~VyvilGDGEl~-----EG~~WEAam~Aah~~L~ 171 (243)
T COG3959 138 KGSPYRVYVILGDGELD-----EGQVWEAAMTAAHYKLD 171 (243)
T ss_pred cCCCceEEEEecCcccc-----cccHHHHHHHHHHhccC
Confidence 35689999999999987 47889999999986554
No 206
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.16 E-value=1.8e+02 Score=25.04 Aligned_cols=51 Identities=16% Similarity=0.434 Sum_probs=32.7
Q ss_pred eEEEEEEe----CCccCCcchhHHHHHHHHHHhc-CC-CeEEEEEeeCCCCchh----hhhccC
Q 018272 173 HHVLVIIT----SGQVATGSQQEQETIRSIVDAS-SY-PLSIVLVGVGDGPWES----IQKFHD 226 (358)
Q Consensus 173 Y~VLlIiT----DG~i~d~~~~~~~t~~aIv~AS-~l-PlSIiiVGVG~~~f~~----m~~LD~ 226 (358)
+-+++|+| ||+..| +.+...+.|.+.+ .+ -+.+-+.|+|+..|.. .+.||.
T Consensus 47 ~~~li~~~sT~G~Ge~p~---~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~ 107 (146)
T PRK09004 47 SGLWLIVTSTHGAGDLPD---NLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQ 107 (146)
T ss_pred CCeEEEEECCCCCCCCCh---hHHHHHHHHHhcCCCCCCCEEEEEeecCCCHHHHhHHHHHHHH
Confidence 44445554 888877 4677777776542 23 3678999999997643 245554
No 207
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=22.98 E-value=3.5e+02 Score=26.65 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=35.9
Q ss_pred eeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCe--EEEEEeeCCCC
Q 018272 147 VQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPL--SIVLVGVGDGP 217 (358)
Q Consensus 147 v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPl--SIiiVGVG~~~ 217 (358)
+-+.+++......+.+.+..+..+..+.+ +++.+|+-+. +.+...+++..+..... .=.|||||+|.
T Consensus 28 livtd~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~e~~~---~~~~v~~~~~~~~~~~~~r~d~IIaiGGGs 96 (345)
T cd08195 28 LIVTDENVAPLYLEKLKAALEAAGFEVEV-IVIPAGEASK---SLETLEKLYDALLEAGLDRKSLIIALGGGV 96 (345)
T ss_pred EEEECCchHHHHHHHHHHHHHhcCCceEE-EEeCCCCCcC---CHHHHHHHHHHHHHcCCCCCCeEEEECChH
Confidence 44556665555555555555554334544 3456676543 24444444444444444 24677888774
No 208
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=26 Score=33.78 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=32.8
Q ss_pred ccccCCCccCcccCCCCee---e--cCCCC-----CchhhhhcC------------CCCCCCccccCCe
Q 018272 307 EVAEAQRCCICCEDEKDTA---F--ECGHM-----SCIKCALRM------------PQCPFCREEITTR 353 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v---~--pCgH~-----~C~~C~~~~------------~~CP~CR~~i~~~ 353 (358)
..+.++.|-||+....|-- + ||... +=..|+.++ -.||.|+..-..+
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 3456789999998776632 3 88644 556788766 1499999865443
No 209
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.69 E-value=48 Score=31.96 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCccCcccC----CCCeee-cCCCCCchhhhhcC--CCCCCCccccCC
Q 018272 311 AQRCCICCED----EKDTAF-ECGHMSCIKCALRM--PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~----~~~~v~-pCgH~~C~~C~~~~--~~CP~CR~~i~~ 352 (358)
...|+|=--. .+-.++ +|||.|-..=+..+ ..|++|.+....
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 4678876532 233445 99999988888776 679999998765
No 210
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=22.02 E-value=1.8e+02 Score=24.14 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhh
Q 018272 158 MVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESI 221 (358)
Q Consensus 158 vI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m 221 (358)
.++++.+...+. .|-|+ ++|+....+ +++.++.+...+-+|+-+.|=+-|......+
T Consensus 34 ~~~~~~~~l~~~--~~~iI-iite~~a~~----i~~~i~~~~~~~~~P~iv~IPs~~~~~~~~~ 90 (104)
T COG1436 34 ELRAALRVLAED--DVGII-LITEDLAEK----IREEIRRIIRSSVLPAIVEIPSPGKEEEEPL 90 (104)
T ss_pred HHHHHHHhhccC--CceEE-EEeHHHHhh----hHHHHHHHhhccCccEEEEeCCCCCCccchH
Confidence 444554444443 68884 458888777 8999999999999999887755444444333
No 211
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=59 Score=33.51 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=10.0
Q ss_pred cCCCCCchhhhhc
Q 018272 327 ECGHMSCIKCALR 339 (358)
Q Consensus 327 pCgH~~C~~C~~~ 339 (358)
.|||.||..|...
T Consensus 183 ~~g~~FC~~C~~~ 195 (444)
T KOG1815|consen 183 GCGHEFCFACGEE 195 (444)
T ss_pred CCCchhHhhcccc
Confidence 7888888888663
No 212
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.42 E-value=1.8e+02 Score=28.87 Aligned_cols=47 Identities=9% Similarity=0.263 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEE
Q 018272 156 APMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSI 208 (358)
Q Consensus 156 apvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSI 208 (358)
..+|++..+++.+++.++.+ =|+.|+.- + |+..++.+.+.+++|++|
T Consensus 55 e~Li~~~~elsd~tg~p~~~-~v~~~~~e-a----m~k~I~~v~~~~d~Pl~I 101 (308)
T PRK00979 55 EALINRQEELSDKTGNPALL-DVVGESPE-A----MEKYIDFVSEITDLPFLI 101 (308)
T ss_pred HHHHHHHHHHHHHhCCCeEE-EEecChHH-H----HHHHHHHHHhcCCCCEEE
Confidence 45888888999988765555 45566532 2 899999999999999996
No 213
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.28 E-value=1.4e+02 Score=25.59 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEEe--eCCCCchhhhhcc
Q 018272 191 EQETIRSIVDASSYPLSIVLVG--VGDGPWESIQKFH 225 (358)
Q Consensus 191 ~~~t~~aIv~AS~lPlSIiiVG--VG~~~f~~m~~LD 225 (358)
+++++++|.++. ++--.|+|| +.+.++..++++.
T Consensus 70 ~~~~~~~L~~~g-~~~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 70 VPALRKELDKLG-RPDILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCChHhHHHHHHCC
Confidence 788888887764 443347777 6666777666654
No 214
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.87 E-value=30 Score=38.66 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=23.0
Q ss_pred ccCCCccCcccCCCC---eeecCCCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKD---TAFECGHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~---~v~pCgH~~C~~C~~~ 339 (358)
+.+..|-+|.-..-. .+|||||.|=+.|..+
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~ 848 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIR 848 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHH
Confidence 345689999865333 5569999999999774
No 215
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=20.77 E-value=2.1e+02 Score=23.55 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHH-HhcCCceeecc--CCC--hHHHHHHHHHHHHhcCCceEEEEEEeCCccCC
Q 018272 134 EHVLECY-RKNVPNVQYFG--PTS--YAPMVEAAVDIVEESGGLHHVLVIITSGQVAT 186 (358)
Q Consensus 134 ~gvl~~Y-~~~l~~v~l~g--pt~--fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d 186 (358)
+.+++.+ ......|.+.| |+. ..+.|.++++.+++... ....+.|.|...+
T Consensus 42 ~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~--~~~~~~tng~~~~ 97 (139)
T PF13353_consen 42 EEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP--KKIIILTNGYTLD 97 (139)
T ss_dssp HHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT---SEEEEEETT--HH
T ss_pred hhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC--CCeEEEECCCchh
Confidence 3444444 23357788888 887 67888888888887643 2345779998765
No 216
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=20.61 E-value=2.8e+02 Score=26.18 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCCchhhhhccC-CCC---
Q 018272 154 SYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGPWESIQKFHD-KIP--- 229 (358)
Q Consensus 154 ~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD~-~~~--- 229 (358)
.|+.+++-+.+.+++. .|.++|+-|++... .++.++.+. ++-.=.||+.+.... ++.+..+-. ..|
T Consensus 15 ff~~ii~gIe~~a~~~--Gy~l~l~~t~~~~~-----~e~~i~~l~--~~~vDGiI~~s~~~~-~~~l~~~~~~~iPvV~ 84 (279)
T PF00532_consen 15 FFAEIIRGIEQEAREH--GYQLLLCNTGDDEE-----KEEYIELLL--QRRVDGIILASSEND-DEELRRLIKSGIPVVL 84 (279)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEEETTTHH-----HHHHHHHHH--HTTSSEEEEESSSCT-CHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEecCCCchH-----HHHHHHHHH--hcCCCEEEEecccCC-hHHHHHHHHcCCCEEE
Confidence 3888888888888875 49998888887543 235555554 345667777766554 555555432 222
Q ss_pred -Ccc--cc-eeEeeecccc
Q 018272 230 -ALQ--FD-NFHFVNFTAI 244 (358)
Q Consensus 230 -~r~--rD-nvqFV~f~~~ 244 (358)
.|. .+ .+.+|-.+++
T Consensus 85 ~~~~~~~~~~~~~V~~D~~ 103 (279)
T PF00532_consen 85 IDRYIDNPEGVPSVYIDNY 103 (279)
T ss_dssp ESS-SCTTCTSCEEEEEHH
T ss_pred EEeccCCcccCCEEEEcch
Confidence 121 23 5667766655
No 217
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=46 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=18.3
Q ss_pred CCCCchhhhhcC--CCCCCCccccCC
Q 018272 329 GHMSCIKCALRM--PQCPFCREEITT 352 (358)
Q Consensus 329 gH~~C~~C~~~~--~~CP~CR~~i~~ 352 (358)
-|.||..|+... ..||.|-..+..
T Consensus 28 EcTFCadCae~~l~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLHGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhcCcCCCCCchhhc
Confidence 356999999954 679999776544
No 218
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.54 E-value=37 Score=24.30 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=5.1
Q ss_pred CCCCCccccCC
Q 018272 342 QCPFCREEITT 352 (358)
Q Consensus 342 ~CP~CR~~i~~ 352 (358)
.||+|..++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 58888877754
No 219
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=20.52 E-value=29 Score=28.25 Aligned_cols=35 Identities=26% Similarity=0.623 Sum_probs=27.3
Q ss_pred CCccCcccCCCCeeecCCCCCchhhhhcCCCCCCCccc
Q 018272 312 QRCCICCEDEKDTAFECGHMSCIKCALRMPQCPFCREE 349 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~pCgH~~C~~C~~~~~~CP~CR~~ 349 (358)
..|..|.+...--+ =|.+|..|+.....|+-|..+
T Consensus 56 ~kC~~C~qktVk~A---Yh~iC~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 56 KKCNKCQQKTVKHA---YHVICDPCAKELKVCAKCGKP 90 (92)
T ss_pred ccccccccchHHHH---HHHHHHHHHHhhccCcccCCC
Confidence 48999986544433 377999999999999999875
No 220
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.29 E-value=53 Score=37.55 Aligned_cols=42 Identities=26% Similarity=0.672 Sum_probs=29.9
Q ss_pred cCCCccCcccCCCC----eee----cCCCCCchhhhhcC-----CCCCCCccccC
Q 018272 310 EAQRCCICCEDEKD----TAF----ECGHMSCIKCALRM-----PQCPFCREEIT 351 (358)
Q Consensus 310 ~~~~C~IC~~~~~~----~v~----pCgH~~C~~C~~~~-----~~CP~CR~~i~ 351 (358)
....|.||-|..-- -.| -||--+|+.|.+-- +.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34689999986322 123 56666999998632 67999998766
No 221
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.18 E-value=38 Score=22.19 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=9.5
Q ss_pred CCCCCCccccCCe
Q 018272 341 PQCPFCREEITTR 353 (358)
Q Consensus 341 ~~CP~CR~~i~~~ 353 (358)
..||+|..+-..+
T Consensus 19 ~~CP~Cg~~~~~F 31 (34)
T cd00729 19 EKCPICGAPKEKF 31 (34)
T ss_pred CcCcCCCCchHHc
Confidence 5799998865544
Done!