Query 018272
Match_columns 358
No_of_seqs 300 out of 1515
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 7.5E-13 2.6E-17 100.2 5.7 52 307-358 11-64 (68)
2 4ic3_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 97.1 2.7 51 307-357 20-72 (74)
3 2yho_A E3 ubiquitin-protein li 99.2 4.1E-12 1.4E-16 98.8 2.3 51 307-357 14-66 (79)
4 2ecg_A Baculoviral IAP repeat- 99.2 4E-12 1.4E-16 97.4 1.9 51 307-357 21-73 (75)
5 2vje_B MDM4 protein; proto-onc 99.1 8.8E-12 3E-16 92.7 -0.0 49 309-357 5-61 (63)
6 2vje_A E3 ubiquitin-protein li 99.0 2E-11 6.9E-16 91.0 -0.4 49 309-357 6-62 (64)
7 1e4u_A Transcriptional repress 98.9 4.6E-10 1.6E-14 87.1 3.3 53 305-357 5-67 (78)
8 2d8t_A Dactylidin, ring finger 98.9 5.6E-10 1.9E-14 84.1 3.7 46 308-353 12-62 (71)
9 3t6p_A Baculoviral IAP repeat- 98.9 4.9E-10 1.7E-14 109.7 3.2 52 306-357 290-343 (345)
10 2djb_A Polycomb group ring fin 98.9 1.2E-09 4E-14 82.6 3.8 53 302-354 6-64 (72)
11 2ea6_A Ring finger protein 4; 98.9 5.4E-10 1.8E-14 83.0 1.8 48 305-352 9-68 (69)
12 2ysl_A Tripartite motif-contai 98.9 1.6E-09 5.4E-14 81.6 4.2 48 305-352 14-69 (73)
13 2ecn_A Ring finger protein 141 98.8 7.5E-10 2.6E-14 82.9 2.1 52 306-357 10-65 (70)
14 2csy_A Zinc finger protein 183 98.8 1.5E-09 5.2E-14 83.7 3.7 47 306-352 10-61 (81)
15 2ecw_A Tripartite motif-contai 98.8 3.6E-09 1.2E-13 81.4 5.5 50 303-352 11-71 (85)
16 2yur_A Retinoblastoma-binding 98.8 2E-09 6.9E-14 81.9 3.7 49 304-352 8-64 (74)
17 2ct2_A Tripartite motif protei 98.8 2.3E-09 8E-14 83.4 3.5 50 303-352 7-68 (88)
18 2ecv_A Tripartite motif-contai 98.8 6E-09 2.1E-13 80.1 5.6 49 304-352 12-71 (85)
19 2egp_A Tripartite motif-contai 98.8 3.3E-09 1.1E-13 81.0 3.7 48 305-352 6-65 (79)
20 4ayc_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 92.5 1.6 45 309-353 51-100 (138)
21 1bor_A Transcription factor PM 98.8 4.6E-09 1.6E-13 75.9 3.7 44 309-352 4-49 (56)
22 1chc_A Equine herpes virus-1 r 98.7 3.8E-09 1.3E-13 78.5 3.2 49 309-357 3-57 (68)
23 2ecy_A TNF receptor-associated 98.7 3.3E-09 1.1E-13 78.6 2.5 48 306-353 10-63 (66)
24 3ng2_A RNF4, snurf, ring finge 98.7 1.7E-09 5.9E-14 80.8 0.5 45 308-352 7-63 (71)
25 2ect_A Ring finger protein 126 98.7 6.5E-09 2.2E-13 79.4 3.6 50 304-353 8-65 (78)
26 3ztg_A E3 ubiquitin-protein li 98.7 3.7E-09 1.3E-13 83.3 2.3 47 305-351 7-61 (92)
27 3l11_A E3 ubiquitin-protein li 98.7 4.8E-09 1.6E-13 86.2 2.3 47 306-352 10-62 (115)
28 1iym_A EL5; ring-H2 finger, ub 98.7 1.4E-08 4.7E-13 72.3 3.6 44 308-351 2-54 (55)
29 1t1h_A Gspef-atpub14, armadill 98.6 8.5E-09 2.9E-13 78.7 2.5 46 307-352 4-55 (78)
30 2xeu_A Ring finger protein 4; 98.6 4.2E-09 1.4E-13 76.9 0.7 48 310-357 2-63 (64)
31 2ecm_A Ring finger and CHY zin 98.6 1.2E-08 4.2E-13 72.4 2.9 42 310-351 4-54 (55)
32 2kiz_A E3 ubiquitin-protein li 98.6 1.9E-08 6.4E-13 75.0 3.9 50 306-355 9-66 (69)
33 2ecj_A Tripartite motif-contai 98.6 1.8E-08 6E-13 72.3 3.6 43 304-346 8-58 (58)
34 3fl2_A E3 ubiquitin-protein li 98.6 5.8E-09 2E-13 86.9 0.9 47 306-352 47-99 (124)
35 2ep4_A Ring finger protein 24; 98.6 1.3E-08 4.4E-13 76.9 2.6 51 305-355 9-67 (74)
36 1g25_A CDK-activating kinase a 98.6 1.1E-08 3.6E-13 75.6 1.0 43 310-352 2-55 (65)
37 2ysj_A Tripartite motif-contai 98.6 3.5E-08 1.2E-12 72.2 3.7 42 305-346 14-63 (63)
38 2y43_A E3 ubiquitin-protein li 98.5 1.1E-08 3.8E-13 81.8 0.7 48 305-352 16-69 (99)
39 1jm7_A BRCA1, breast cancer ty 98.5 1.7E-08 5.9E-13 82.0 1.8 46 307-352 17-70 (112)
40 3lrq_A E3 ubiquitin-protein li 98.5 1.3E-08 4.3E-13 82.0 0.8 47 306-352 17-70 (100)
41 2l0b_A E3 ubiquitin-protein li 98.5 1.7E-08 5.9E-13 79.8 0.9 46 308-353 37-90 (91)
42 1z6u_A NP95-like ring finger p 98.5 1.9E-08 6.5E-13 87.1 0.9 48 306-353 73-126 (150)
43 2ckl_A Polycomb group ring fin 98.5 2.8E-08 9.7E-13 80.7 1.8 47 306-352 10-62 (108)
44 1jm7_B BARD1, BRCA1-associated 98.5 5.2E-08 1.8E-12 80.4 3.1 48 305-352 16-67 (117)
45 1x4j_A Ring finger protein 38; 98.5 2.9E-08 9.8E-13 75.4 1.1 45 308-352 20-72 (75)
46 2ckl_B Ubiquitin ligase protei 98.5 3.4E-08 1.2E-12 86.2 1.5 47 306-352 49-102 (165)
47 2y1n_A E3 ubiquitin-protein li 98.5 6.3E-08 2.2E-12 95.8 3.5 46 311-356 332-383 (389)
48 2kr4_A Ubiquitin conjugation f 98.4 7.5E-08 2.6E-12 75.5 2.3 47 307-353 10-61 (85)
49 3hct_A TNF receptor-associated 98.4 6E-08 2.1E-12 80.2 1.8 48 306-353 13-66 (118)
50 1rmd_A RAG1; V(D)J recombinati 98.4 5.3E-08 1.8E-12 80.0 1.3 47 306-352 18-70 (116)
51 1wgm_A Ubiquitin conjugation f 98.4 1.2E-07 4.3E-12 76.3 3.1 48 306-353 17-70 (98)
52 4hqf_A Thrombospondin-related 98.4 4.3E-06 1.5E-10 78.3 14.1 151 47-226 20-179 (281)
53 2kre_A Ubiquitin conjugation f 98.4 8.6E-08 2.9E-12 77.5 2.0 46 307-352 25-75 (100)
54 3knv_A TNF receptor-associated 98.3 5.6E-08 1.9E-12 83.3 -0.9 45 306-350 26-76 (141)
55 2c2l_A CHIP, carboxy terminus 98.3 2.5E-07 8.5E-12 86.1 3.3 43 310-352 207-255 (281)
56 1v87_A Deltex protein 2; ring- 98.2 1.6E-07 5.5E-12 76.7 0.7 43 311-353 25-95 (114)
57 4hqo_A Sporozoite surface prot 98.2 4.4E-06 1.5E-10 77.9 10.0 151 47-226 17-176 (266)
58 4ap4_A E3 ubiquitin ligase RNF 98.2 1.8E-07 6.2E-12 77.5 0.1 44 309-352 5-60 (133)
59 2ecl_A Ring-box protein 2; RNF 98.2 8.1E-07 2.8E-11 68.7 3.4 43 310-352 14-76 (81)
60 3hcs_A TNF receptor-associated 98.1 6.4E-07 2.2E-11 78.3 1.8 46 307-352 14-65 (170)
61 2yu4_A E3 SUMO-protein ligase 98.1 7.8E-07 2.7E-11 70.8 2.0 42 308-349 4-59 (94)
62 3ibs_A Conserved hypothetical 98.1 1.4E-05 4.6E-10 71.2 10.4 141 47-216 10-150 (218)
63 2f42_A STIP1 homology and U-bo 98.1 1E-06 3.4E-11 78.6 1.9 45 309-353 104-154 (179)
64 4ap4_A E3 ubiquitin ligase RNF 98.1 5.7E-07 1.9E-11 74.5 0.2 49 309-357 70-132 (133)
65 3n2n_F Anthrax toxin receptor 98.0 4.8E-05 1.7E-09 65.7 11.8 148 47-226 6-158 (185)
66 1atz_A VON willebrand factor; 98.0 9E-05 3.1E-09 64.7 12.7 143 48-226 5-157 (189)
67 1shu_X Anthrax toxin receptor 97.9 2.5E-05 8.7E-10 67.3 8.0 148 48-227 6-156 (182)
68 2xgg_A Microneme protein 2; A/ 97.9 0.00011 3.7E-09 63.9 11.4 137 48-216 17-162 (178)
69 3htk_C E3 SUMO-protein ligase 97.8 7.5E-06 2.6E-10 76.9 3.4 46 307-352 177-232 (267)
70 1q0p_A Complement factor B; VO 97.8 4.1E-05 1.4E-09 68.1 8.1 157 47-226 14-191 (223)
71 1n3y_A Integrin alpha-X; alpha 97.8 1.3E-05 4.4E-10 70.2 4.7 144 48-226 9-166 (198)
72 1ijb_A VON willebrand factor; 97.8 0.00012 4.2E-09 64.9 11.2 146 48-225 13-167 (202)
73 3dpl_R Ring-box protein 1; ubi 97.8 6.3E-06 2.2E-10 67.3 2.4 42 310-351 36-100 (106)
74 4b4t_W RPN10, 26S proteasome r 97.8 0.00016 5.5E-09 68.2 11.8 161 51-241 6-174 (268)
75 2b2x_A Integrin alpha-1; compu 97.7 0.00021 7.3E-09 64.1 11.5 133 47-216 21-164 (223)
76 2d8s_A Cellular modulator of i 97.7 3.3E-05 1.1E-09 59.8 4.6 51 306-356 10-74 (80)
77 1pt6_A Integrin alpha-1; cell 97.7 0.00037 1.3E-08 62.0 12.3 133 48-216 7-149 (213)
78 4fx5_A VON willebrand factor t 97.7 0.00017 5.8E-09 72.9 10.7 154 47-226 76-231 (464)
79 1mf7_A Integrin alpha M; cell 97.7 1.7E-05 5.8E-10 69.6 2.9 143 48-226 5-162 (194)
80 2odp_A Complement C2; C3/C5 co 97.7 0.00019 6.6E-09 72.2 10.9 156 46-227 7-186 (509)
81 1wim_A KIAA0161 protein; ring 97.6 8.3E-06 2.8E-10 64.5 0.3 40 310-349 4-61 (94)
82 4a0k_B E3 ubiquitin-protein li 97.6 9.1E-06 3.1E-10 67.6 0.2 41 311-351 48-111 (117)
83 2x5n_A SPRPN10, 26S proteasome 97.6 0.00077 2.7E-08 60.1 12.6 162 50-244 4-173 (192)
84 1v7p_C Integrin alpha-2; snake 97.6 0.0011 3.9E-08 58.2 13.2 132 48-215 6-147 (200)
85 1rrk_A Complement factor B; BB 97.3 0.00076 2.6E-08 67.4 10.1 152 49-226 2-177 (497)
86 2x31_A Magnesium-chelatase 60 97.1 9.9E-05 3.4E-09 64.2 0.8 145 48-225 5-161 (189)
87 2bay_A PRE-mRNA splicing facto 97.1 0.00018 6.1E-09 52.7 1.8 43 311-353 3-51 (61)
88 3hrz_D Complement factor B; se 97.1 0.00099 3.4E-08 70.0 8.1 158 47-227 242-420 (741)
89 3zqk_A VON willebrand factor; 97.0 0.002 6.7E-08 56.9 7.8 139 47-226 20-169 (199)
90 3vk6_A E3 ubiquitin-protein li 96.7 0.00066 2.3E-08 54.6 2.4 42 313-354 3-51 (101)
91 3k6s_A Integrin alpha-X; cell 96.4 0.0033 1.1E-07 69.8 6.6 142 48-226 130-287 (1095)
92 1mjn_A Integrin alpha-L; rossm 96.2 0.016 5.5E-07 50.0 8.7 130 48-217 2-138 (179)
93 1yvr_A RO autoantigen, 60-kDa 96.1 0.032 1.1E-06 57.1 11.2 141 47-219 367-507 (538)
94 1jey_A KU70; double-strand DNA 95.5 0.059 2E-06 56.1 10.8 153 50-219 37-212 (609)
95 2ko5_A Ring finger protein Z; 95.4 0.017 5.6E-07 45.9 4.5 52 305-356 22-77 (99)
96 1jey_B KU80; double-strand DNA 95.3 0.058 2E-06 55.5 9.8 144 49-216 8-170 (565)
97 3k1l_B Fancl; UBC, ring, RWD, 95.2 0.0065 2.2E-07 59.1 2.2 45 309-353 306-374 (381)
98 2nvo_A RO sixty-related protei 95.1 0.084 2.9E-06 54.0 10.1 142 47-218 361-502 (535)
99 2ct0_A Non-SMC element 1 homol 94.8 0.025 8.6E-07 42.9 3.9 45 309-353 13-65 (74)
100 1vyx_A ORF K3, K3RING; zinc-bi 94.2 0.018 6.3E-07 41.7 1.8 44 309-352 4-59 (60)
101 2jun_A Midline-1; B-BOX, TRIM, 89.0 0.13 4.4E-06 40.4 1.3 30 310-339 2-35 (101)
102 2cs3_A Protein C14ORF4, MY039 82.7 0.66 2.3E-05 35.7 2.4 31 309-339 13-48 (93)
103 3rag_A Uncharacterized protein 72.8 2.5 8.4E-05 39.0 3.6 42 172-217 9-50 (242)
104 2ww8_A RRGA, cell WALL surface 72.1 11 0.00039 40.8 9.1 40 147-186 351-392 (893)
105 1z2q_A LM5-1; membrane protein 66.1 4.5 0.00015 30.8 3.2 32 308-339 18-54 (84)
106 3nw0_A Non-structural maintena 65.0 2.7 9.2E-05 38.4 2.1 42 311-352 180-229 (238)
107 1weo_A Cellulose synthase, cat 64.0 6.2 0.00021 30.8 3.6 43 310-352 15-70 (93)
108 2a20_A Regulating synaptic mem 63.9 0.45 1.5E-05 34.4 -2.6 38 309-349 7-60 (62)
109 3i2d_A E3 SUMO-protein ligase 59.7 4.1 0.00014 39.8 2.4 44 309-352 247-300 (371)
110 2fiy_A Protein FDHE homolog; F 57.8 2.8 9.7E-05 39.9 0.9 40 310-349 181-231 (309)
111 4fo9_A E3 SUMO-protein ligase 57.0 4.9 0.00017 39.1 2.4 44 309-352 213-266 (360)
112 3zyq_A Hepatocyte growth facto 53.5 13 0.00045 33.3 4.6 28 312-339 165-197 (226)
113 3mpx_A FYVE, rhogef and PH dom 53.4 4.5 0.00015 39.4 1.5 42 309-350 373-430 (434)
114 3t7l_A Zinc finger FYVE domain 50.7 8 0.00027 29.8 2.3 31 309-339 18-53 (90)
115 1x4u_A Zinc finger, FYVE domai 47.4 11 0.00036 28.6 2.5 31 309-339 12-47 (84)
116 1z60_A TFIIH basal transcripti 46.6 11 0.00037 27.1 2.3 35 312-346 16-58 (59)
117 2zet_C Melanophilin; complex, 45.0 3.8 0.00013 35.1 -0.5 40 310-349 67-117 (153)
118 1joc_A EEA1, early endosomal a 44.4 10 0.00035 31.0 2.1 32 309-340 67-103 (125)
119 2d8v_A Zinc finger FYVE domain 43.0 6.1 0.00021 29.1 0.4 34 307-340 4-38 (67)
120 1dvp_A HRS, hepatocyte growth 42.6 28 0.00096 30.8 4.9 29 311-339 161-194 (220)
121 1wfk_A Zinc finger, FYVE domai 42.2 9.3 0.00032 29.4 1.4 31 309-339 7-42 (88)
122 1zbd_B Rabphilin-3A; G protein 42.0 3.6 0.00012 34.4 -1.1 40 310-349 54-107 (134)
123 2yw8_A RUN and FYVE domain-con 39.8 12 0.00041 28.2 1.7 31 309-339 17-52 (82)
124 2iue_A Pactolus I-domain; memb 34.4 1.5E+02 0.0052 26.3 8.4 108 48-186 3-118 (212)
125 1vfy_A Phosphatidylinositol-3- 33.8 16 0.00054 26.9 1.4 28 312-339 12-44 (73)
126 1y02_A CARP2, FYVE-ring finger 32.9 16 0.00053 29.9 1.4 37 311-347 19-64 (120)
127 2jne_A Hypothetical protein YF 31.3 11 0.00039 29.8 0.3 38 312-352 33-73 (101)
128 1wil_A KIAA1045 protein; ring 29.6 38 0.0013 26.2 2.9 31 309-339 13-46 (89)
129 3fcs_B Integrin beta-3; beta p 29.2 1E+02 0.0035 32.3 7.2 49 137-185 200-255 (690)
130 2lri_C Autoimmune regulator; Z 29.1 72 0.0024 23.0 4.3 40 310-350 11-60 (66)
131 2lze_A A primordial catalytic 28.8 56 0.0019 25.1 3.9 10 311-320 17-26 (87)
132 3rag_A Uncharacterized protein 27.7 88 0.003 28.5 5.7 92 48-168 134-227 (242)
133 2cup_A Skeletal muscle LIM-pro 27.5 32 0.0011 26.0 2.4 40 312-351 34-77 (101)
134 1dl6_A Transcription factor II 27.3 38 0.0013 23.8 2.5 36 303-340 3-40 (58)
135 1wg2_A Zinc finger (AN1-like) 24.0 55 0.0019 23.8 2.8 27 310-336 14-42 (64)
136 3hr4_A Nitric oxide synthase, 21.7 1.1E+02 0.0036 27.3 5.0 51 173-226 89-147 (219)
137 2gmg_A Hypothetical protein PF 21.5 35 0.0012 27.3 1.4 25 327-352 72-96 (105)
138 2jmo_A Parkin; IBR, E3 ligase, 21.3 37 0.0013 25.3 1.5 21 328-349 56-76 (80)
139 1x4w_A Hypothetical protein FL 21.3 44 0.0015 24.6 1.8 27 309-335 13-44 (67)
140 2pv0_B DNA (cytosine-5)-methyl 21.1 40 0.0014 33.0 2.1 39 311-350 93-149 (386)
141 2l7x_A Envelope glycoprotein; 20.7 33 0.0011 25.5 1.0 29 312-340 6-40 (77)
142 2xqn_T Testin, TESS; metal-bin 20.5 33 0.0011 27.1 1.2 43 310-352 29-75 (126)
143 2jrp_A Putative cytoplasmic pr 20.4 19 0.00063 27.6 -0.4 42 313-354 20-65 (81)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.5e-13 Score=100.15 Aligned_cols=52 Identities=21% Similarity=0.570 Sum_probs=47.8
Q ss_pred ccccCCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVYP 358 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f~ 358 (358)
...+...|+||+++.+++++ ||||. +|..|+..+..||+||++|..++++|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 34457899999999999998 99999 999999999999999999999999984
No 2
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=4.5e-12 Score=97.07 Aligned_cols=51 Identities=31% Similarity=0.849 Sum_probs=47.5
Q ss_pred ccccCCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 357 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f 357 (358)
.+.+...|+||++...++++ ||||. +|..|+.++..||+||+++..++++|
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 45567899999999999988 99999 99999999999999999999999987
No 3
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.20 E-value=4.1e-12 Score=98.78 Aligned_cols=51 Identities=39% Similarity=1.046 Sum_probs=47.2
Q ss_pred ccccCCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 357 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f 357 (358)
.+.+...|+||++..+++++ ||||. +|..|+.+++.||+||.++..++++|
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 44566899999999999998 99999 99999999999999999999999887
No 4
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4e-12 Score=97.43 Aligned_cols=51 Identities=31% Similarity=0.882 Sum_probs=47.1
Q ss_pred ccccCCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 357 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f 357 (358)
.+.+..+|+||++..+++++ ||||. ||..|+.++..||+||.++...+++|
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 34556799999999999998 99999 99999999999999999999999987
No 5
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.09 E-value=8.8e-12 Score=92.67 Aligned_cols=49 Identities=31% Similarity=0.842 Sum_probs=43.8
Q ss_pred ccCCCccCcccCCCCeee---cCCCC-CchhhhhcCC----CCCCCccccCCeeecC
Q 018272 309 AEAQRCCICCEDEKDTAF---ECGHM-SCIKCALRMP----QCPFCREEITTRRRVY 357 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~---pCgH~-~C~~C~~~~~----~CP~CR~~i~~~~~~f 357 (358)
+...+|+||+++++++++ ||||. +|..|+.++. .||+||++|..++++|
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 456799999999998653 99999 9999999885 8999999999999987
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.03 E-value=2e-11 Score=90.99 Aligned_cols=49 Identities=31% Similarity=0.789 Sum_probs=43.7
Q ss_pred ccCCCccCcccCCCCeee---cCCCC-CchhhhhcCC----CCCCCccccCCeeecC
Q 018272 309 AEAQRCCICCEDEKDTAF---ECGHM-SCIKCALRMP----QCPFCREEITTRRRVY 357 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~---pCgH~-~C~~C~~~~~----~CP~CR~~i~~~~~~f 357 (358)
.+..+|+||+++++++++ ||||. +|..|+.++. .||+||++|..++++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 356799999999999774 99999 8999999873 5999999999999987
No 7
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=4.6e-10 Score=87.08 Aligned_cols=53 Identities=30% Similarity=0.661 Sum_probs=41.9
Q ss_pred ccccccCCCccCcccCC--CCeee-c--CCCCCchhhhhcCC-----CCCCCccccCCeeecC
Q 018272 305 SAEVAEAQRCCICCEDE--KDTAF-E--CGHMSCIKCALRMP-----QCPFCREEITTRRRVY 357 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~--~~~v~-p--CgH~~C~~C~~~~~-----~CP~CR~~i~~~~~~f 357 (358)
...+.+...|+||++.. .++.+ | |||.||..|+.+++ .||+||+++.....+|
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 34567788999999977 34555 5 99999999998763 6999999998765444
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=5.6e-10 Score=84.12 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=40.2
Q ss_pred cccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 308 VAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
..+...|+||++...+++. +|||.||..|+.++ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4566899999999999877 99999999999987 5699999998753
No 9
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.89 E-value=4.9e-10 Score=109.69 Aligned_cols=52 Identities=33% Similarity=0.870 Sum_probs=48.6
Q ss_pred cccccCCCccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 357 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~-~C~~C~~~~~~CP~CR~~i~~~~~~f 357 (358)
..+.+...|+||++...++++ ||||. +|..|+.++..||+||.++..++++|
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 455678999999999999998 99999 99999999999999999999999998
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=82.56 Aligned_cols=53 Identities=26% Similarity=0.528 Sum_probs=43.8
Q ss_pred CCCccccccCCCccCcccCCCCee-e-cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018272 302 GPVSAEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM----PQCPFCREEITTRR 354 (358)
Q Consensus 302 ~~~~~~~~~~~~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~ 354 (358)
+.....+.+...|+||++...+++ + +|||.||..|+.++ ..||+||.++....
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 6 SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 344456677889999999999865 4 99999999999876 67999999998753
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=5.4e-10 Score=82.98 Aligned_cols=48 Identities=29% Similarity=0.712 Sum_probs=39.9
Q ss_pred ccccccCCCccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 305 SAEVAEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~-------v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
.....+...|+||++...+. ++ +|||.||..|+.++ ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34556778999999987664 55 99999999999877 579999999875
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=81.62 Aligned_cols=48 Identities=27% Similarity=0.769 Sum_probs=41.5
Q ss_pred ccccccCCCccCcccCCCCeee-cCCCCCchhhhhcCC-------CCCCCccccCC
Q 018272 305 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRMP-------QCPFCREEITT 352 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~~-------~CP~CR~~i~~ 352 (358)
...+.+...|+||++...+++. +|||.||..|+.++. .||+||.++..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456678899999999999887 999999999998763 69999999875
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=7.5e-10 Score=82.94 Aligned_cols=52 Identities=29% Similarity=0.795 Sum_probs=43.3
Q ss_pred cccccCCCccCcccCCCCeeecCCCCCchhhhhcC----CCCCCCccccCCeeecC
Q 018272 306 AEVAEAQRCCICCEDEKDTAFECGHMSCIKCALRM----PQCPFCREEITTRRRVY 357 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~~f 357 (358)
....+...|+||++...++.++|||.||..|+.++ ..||+||.++.....+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred hcCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 44566789999999999944499999999999987 56999999998765544
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=83.74 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=40.7
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
.+..+...|+||++...++++ +|||.||..|+.++ ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 344567899999999999887 99999999999877 579999999874
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=3.6e-09 Score=81.41 Aligned_cols=50 Identities=30% Similarity=0.580 Sum_probs=42.3
Q ss_pred CCccccccCCCccCcccCCCCeee-cCCCCCchhhhhc----------CCCCCCCccccCC
Q 018272 303 PVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALR----------MPQCPFCREEITT 352 (358)
Q Consensus 303 ~~~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~----------~~~CP~CR~~i~~ 352 (358)
.....+.+...|+||++...+++. +|||.||..|+.. ...||+||.++..
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 344556778999999999999877 9999999999986 3579999999875
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.81 E-value=2e-09 Score=81.87 Aligned_cols=49 Identities=22% Similarity=0.582 Sum_probs=41.4
Q ss_pred CccccccCCCccCcccCCCCeee-c-CCCCCchhhhhcC------CCCCCCccccCC
Q 018272 304 VSAEVAEAQRCCICCEDEKDTAF-E-CGHMSCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 304 ~~~~~~~~~~C~IC~~~~~~~v~-p-CgH~~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
....+.+...|+||++...+++. + |||.||..|+.++ ..||+||+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34556778899999999999877 8 9999999999876 379999998654
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.3e-09 Score=83.35 Aligned_cols=50 Identities=28% Similarity=0.701 Sum_probs=41.8
Q ss_pred CCccccccCCCccCcccCCCC----eee-cCCCCCchhhhhcC-------CCCCCCccccCC
Q 018272 303 PVSAEVAEAQRCCICCEDEKD----TAF-ECGHMSCIKCALRM-------PQCPFCREEITT 352 (358)
Q Consensus 303 ~~~~~~~~~~~C~IC~~~~~~----~v~-pCgH~~C~~C~~~~-------~~CP~CR~~i~~ 352 (358)
.....+.+...|+||++...+ +++ +|||.||..|+.++ ..||+||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344566778899999999887 766 99999999999876 479999998764
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=6e-09 Score=80.13 Aligned_cols=49 Identities=31% Similarity=0.640 Sum_probs=42.0
Q ss_pred CccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----------CCCCCCccccCC
Q 018272 304 VSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----------PQCPFCREEITT 352 (358)
Q Consensus 304 ~~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----------~~CP~CR~~i~~ 352 (358)
....+.+...|+||++...+++. +|||.||..|+..+ ..||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34556778999999999999876 99999999999863 579999999885
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.78 E-value=3.3e-09 Score=80.97 Aligned_cols=48 Identities=31% Similarity=0.634 Sum_probs=41.1
Q ss_pred ccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----------CCCCCCccccCC
Q 018272 305 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----------PQCPFCREEITT 352 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----------~~CP~CR~~i~~ 352 (358)
...+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3456778899999999999876 99999999999964 369999999875
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.76 E-value=1.4e-09 Score=92.51 Aligned_cols=45 Identities=29% Similarity=0.739 Sum_probs=39.7
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
.+...|+||++...+++. ||||.||..|+..+ ..||+||.++...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456789999999999887 99999999999876 5699999999764
No 21
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=4.6e-09 Score=75.85 Aligned_cols=44 Identities=27% Similarity=0.567 Sum_probs=38.9
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC-CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-~~CP~CR~~i~~ 352 (358)
.+...|+||++...+++. +|||.||..|+... ..||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 466899999999999877 99999999999876 579999999875
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.75 E-value=3.8e-09 Score=78.47 Aligned_cols=49 Identities=33% Similarity=0.730 Sum_probs=41.0
Q ss_pred ccCCCccCcccCCCCe-ee-cCCCCCchhhhhcC----CCCCCCccccCCeeecC
Q 018272 309 AEAQRCCICCEDEKDT-AF-ECGHMSCIKCALRM----PQCPFCREEITTRRRVY 357 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~-v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~~f 357 (358)
++...|+||++...+. +. +|||.||..|+.++ ..||+||.++...++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 3457999999999884 55 99999999999876 67999999998876543
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.3e-09 Score=78.63 Aligned_cols=48 Identities=29% Similarity=0.639 Sum_probs=40.7
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 353 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~~ 353 (358)
..+.+...|+||++..++++. +|||.||..|+.++ ..||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 344567899999999999877 99999999999865 4699999998763
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.72 E-value=1.7e-09 Score=80.85 Aligned_cols=45 Identities=31% Similarity=0.762 Sum_probs=38.0
Q ss_pred cccCCCccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 308 VAEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~-------v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
..+...|+||++...+. +. +|||.||..|+.++ ..||+||.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 35678999999987664 55 99999999999876 689999999885
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.71 E-value=6.5e-09 Score=79.37 Aligned_cols=50 Identities=26% Similarity=0.582 Sum_probs=39.4
Q ss_pred CccccccCCCccCcccCCCC---eee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 304 VSAEVAEAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 304 ~~~~~~~~~~C~IC~~~~~~---~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
......+...|+||++...+ +.. +|||.||..|+.++ ..||+||.++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 33445667899999887653 233 99999999999876 5799999998764
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.71 E-value=3.7e-09 Score=83.27 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=40.4
Q ss_pred ccccccCCCccCcccCCCCeee-c-CCCCCchhhhhcC------CCCCCCccccC
Q 018272 305 SAEVAEAQRCCICCEDEKDTAF-E-CGHMSCIKCALRM------PQCPFCREEIT 351 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v~-p-CgH~~C~~C~~~~------~~CP~CR~~i~ 351 (358)
...+.+...|+||++...+++. + |||.||..|+..+ ..||+||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456778999999999999877 8 9999999999866 47999999973
No 27
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.69 E-value=4.8e-09 Score=86.22 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=40.3
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
....+...|+||++...+++. +|||.||..|+.++ ..||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 445667899999999999876 99999999999987 369999998863
No 28
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.65 E-value=1.4e-08 Score=72.25 Aligned_cols=44 Identities=25% Similarity=0.724 Sum_probs=36.3
Q ss_pred cccCCCccCcccCCCC---ee-ec-CCCCCchhhhhcC----CCCCCCccccC
Q 018272 308 VAEAQRCCICCEDEKD---TA-FE-CGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~---~v-~p-CgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
+++...|+||++...+ +. ++ |||.||..|+.++ ..||+||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999998766 44 46 9999999999987 57999999864
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.65 E-value=8.5e-09 Score=78.71 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=40.1
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
.+.+...|+||++...+++. +|||.||+.|+.++ ..||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34567899999999999887 99999999999865 469999999875
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.64 E-value=4.2e-09 Score=76.89 Aligned_cols=48 Identities=31% Similarity=0.777 Sum_probs=38.9
Q ss_pred cCCCccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC--eeecC
Q 018272 310 EAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT--RRRVY 357 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~-------v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~--~~~~f 357 (358)
+...|+||++...+. +. +|||.||..|+.++ ..||+||.++.. ..++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 457899999987653 44 99999999999876 579999999985 45554
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.63 E-value=1.2e-08 Score=72.43 Aligned_cols=42 Identities=31% Similarity=0.707 Sum_probs=35.8
Q ss_pred cCCCccCcccCCCC----eee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018272 310 EAQRCCICCEDEKD----TAF-ECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 310 ~~~~C~IC~~~~~~----~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
+...|+||++...+ +++ +|||.||..|+.++ ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998755 555 99999999999987 68999999875
No 32
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.63 E-value=1.9e-08 Score=74.98 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=39.4
Q ss_pred cccccCCCccCcccCCC---Ceee-cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018272 306 AEVAEAQRCCICCEDEK---DTAF-ECGHMSCIKCALRM----PQCPFCREEITTRRR 355 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~---~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~ 355 (358)
.+..+...|+||++... .++. +|||.||..|+.++ ..||+||..+...+.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 34456689999988653 3444 99999999999976 679999999987653
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=72.29 Aligned_cols=43 Identities=33% Similarity=0.771 Sum_probs=36.3
Q ss_pred CccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCC
Q 018272 304 VSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFC 346 (358)
Q Consensus 304 ~~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-------~~CP~C 346 (358)
....+.+...|+||++...+++. +|||.||..|+.++ ..||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 33456678899999999999877 99999999999876 469998
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.62 E-value=5.8e-09 Score=86.90 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=40.8
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
..+.+...|+||++...+++. +|||.||..|+..+ ..||+||.++..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred HhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345667899999999999887 99999999999865 379999999976
No 35
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=76.91 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=40.5
Q ss_pred ccccccCCCccCcccCCCC---eee-cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018272 305 SAEVAEAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM----PQCPFCREEITTRRR 355 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~---~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~ 355 (358)
..+..+...|+||++...+ +.. +|||.||..|+.++ ..||+||.++.....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455667899999998654 223 99999999999876 579999999987544
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1.1e-08 Score=75.65 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=34.9
Q ss_pred cCCCccCccc-CCCCe----ee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 310 EAQRCCICCE-DEKDT----AF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~-~~~~~----v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
++..|+||++ ...++ ++ +|||.||..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999999 44443 34 99999999999877 469999999976
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3.5e-08 Score=72.23 Aligned_cols=42 Identities=31% Similarity=0.815 Sum_probs=36.1
Q ss_pred ccccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCC
Q 018272 305 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFC 346 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-------~~CP~C 346 (358)
...+.+...|+||++...+++. +|||.||..|+.++ ..||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456778899999999999887 99999999999876 369998
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.55 E-value=1.1e-08 Score=81.77 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=40.7
Q ss_pred ccccccCCCccCcccCCCCee-e-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 305 SAEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
...+.+...|+||++...+++ + +|||.||..|+.++ ..||+||.++..
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345567789999999999976 4 89999999999876 579999999875
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1.7e-08 Score=81.97 Aligned_cols=46 Identities=35% Similarity=0.845 Sum_probs=39.5
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCCccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFCREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-------~~CP~CR~~i~~ 352 (358)
.+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34566899999999999877 99999999999876 269999999875
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.54 E-value=1.3e-08 Score=82.01 Aligned_cols=47 Identities=36% Similarity=0.902 Sum_probs=40.8
Q ss_pred cccccCCCccCcccCCCCeee--cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
..+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 456678999999999999765 99999999999976 479999999865
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.51 E-value=1.7e-08 Score=79.84 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=37.4
Q ss_pred cccCCCccCcccCCCC---eee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 308 VAEAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~---~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
..+...|+||++.... +.. +|||.||..|+.++ ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 3456789999987655 444 99999999999976 5799999988753
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.50 E-value=1.9e-08 Score=87.13 Aligned_cols=48 Identities=27% Similarity=0.585 Sum_probs=41.3
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 353 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~~ 353 (358)
..+.+...|+||++...+++. +|||.||..|+..+ ..||+||.++...
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345567899999999999887 99999999999876 3699999998864
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.49 E-value=2.8e-08 Score=80.72 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=41.1
Q ss_pred cccccCCCccCcccCCCCee-e-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
..+.+...|+||++...+++ + +|||.||..|+..+ ..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45677899999999999976 4 99999999999877 579999999875
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=5.2e-08 Score=80.42 Aligned_cols=48 Identities=21% Similarity=0.569 Sum_probs=41.5
Q ss_pred ccccccCCCccCcccCCCCee-e-cCCCCCchhhhhcC--CCCCCCccccCC
Q 018272 305 SAEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM--PQCPFCREEITT 352 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~--~~CP~CR~~i~~ 352 (358)
...+.+...|+||++...+++ + +|||.||..|+..+ ..||+||.++..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 345677899999999999976 4 89999999999988 569999999854
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.9e-08 Score=75.35 Aligned_cols=45 Identities=27% Similarity=0.616 Sum_probs=36.6
Q ss_pred cccCCCccCcccCCCCe---ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 308 VAEAQRCCICCEDEKDT---AF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~---v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
..+...|+||++...+. .. +|||.||..|+.++ ..||+||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34567999999876542 33 99999999999987 679999998865
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.46 E-value=3.4e-08 Score=86.21 Aligned_cols=47 Identities=30% Similarity=0.700 Sum_probs=39.1
Q ss_pred cccccCCCccCcccCCCCee-e-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v-~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
..+.+...|+||++...+++ + +|||.||..|+.++ ..||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34456679999999999976 4 99999999999876 459999999854
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.46 E-value=6.3e-08 Score=95.85 Aligned_cols=46 Identities=41% Similarity=0.947 Sum_probs=40.4
Q ss_pred CCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCeeec
Q 018272 311 AQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTRRRV 356 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~~~~~ 356 (358)
...|+||++...++++ ||||.||..|+..+ ..||+||.++.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4699999999999987 99999999999854 6799999999986544
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.41 E-value=7.5e-08 Score=75.45 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=41.3
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
.+.+...|+||++..+++|. +|||.||+.|+.++ ..||+||+++...
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 44567899999999999998 99999999999876 5799999998753
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.41 E-value=6e-08 Score=80.16 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=41.5
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 353 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~~ 353 (358)
..+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345677899999999999887 99999999999876 3899999998763
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.41 E-value=5.3e-08 Score=80.04 Aligned_cols=47 Identities=32% Similarity=0.611 Sum_probs=41.1
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
.++.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 456677899999999999887 99999999999865 479999999875
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.39 E-value=1.2e-07 Score=76.31 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=41.6
Q ss_pred cccccCCCccCcccCCCCeee-cCC-CCCchhhhhcC----CCCCCCccccCCe
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECG-HMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCg-H~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
..+.+...|+||++..+++|. +|| |.||+.|+.++ ..||+||+++...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 345667899999999999998 999 99999999876 4699999998753
No 52
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.39 E-value=4.3e-06 Score=78.29 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=102.3
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChH-HHHHHHHhhcccccCC---C-ceeEEeecCCCCCCCCcc
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPY-QEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVF 121 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Y-q~aI~~ig~vl~~yD~---d-~ip~~GFGa~~~~~~~~f 121 (358)
..+++++.||-|.|=+ . ..+ +.+...+..++..+.. + .+-++.|+.... .+|
T Consensus 20 ~~~div~vlD~SgSM~--------~------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~ 76 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIR--------R------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EII 76 (281)
T ss_dssp SCEEEEEEEECCCCSS--------T------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEE
T ss_pred CceeEEEEEeCCCCcC--------H------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEE
Confidence 4689999999987732 1 122 4455555555555553 6 999999998642 234
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccCCcchhHHHHHHHH
Q 018272 122 SFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---GLHHVLVIITSGQVATGSQQEQETIRSI 198 (358)
Q Consensus 122 ~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~t~~aI 198 (358)
+++... -...+.++++-.+.-......|-|+....|+.|.+.....+ ..-.++|+||||..+| ..++.+++
T Consensus 77 ~l~~~~--~~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d----~~~~~~~~ 150 (281)
T 4hqf_A 77 RLHSDA--SKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS----IQDSLKES 150 (281)
T ss_dssp EECSSC--SSCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC----HHHHHHHH
T ss_pred EccccC--ccCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC----cHHHHHHH
Confidence 554221 12345555444443223346899999999999977766432 2467889999999988 56777777
Q ss_pred HHhcCCCeEEEEEeeCCC-CchhhhhccC
Q 018272 199 VDASSYPLSIVLVGVGDG-PWESIQKFHD 226 (358)
Q Consensus 199 v~AS~lPlSIiiVGVG~~-~f~~m~~LD~ 226 (358)
..+...-+-|..||||++ +-+.|+.+-+
T Consensus 151 ~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 151 RKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 777778899999999985 6666777754
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.38 E-value=8.6e-08 Score=77.55 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=40.8
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
.+.+...|+||++..+++|. +|||.||+.|+.++ ..||+||.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 44567899999999999998 99999999999876 469999999875
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.30 E-value=5.6e-08 Score=83.33 Aligned_cols=45 Identities=22% Similarity=0.528 Sum_probs=39.5
Q ss_pred cccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCcccc
Q 018272 306 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEI 350 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i 350 (358)
..+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999999887 99999999999987 3799999975
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=2.5e-07 Score=86.07 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=38.3
Q ss_pred cCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 310 EAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
+...|+||++..+++|. +|||.||+.|+.++ ..||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 46799999999999998 99999999999876 349999999875
No 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.25 E-value=1.6e-07 Score=76.69 Aligned_cols=43 Identities=30% Similarity=0.685 Sum_probs=34.1
Q ss_pred CCCccCcccCCCCe------------------ee-cCCCCCchhhhhcC---------CCCCCCccccCCe
Q 018272 311 AQRCCICCEDEKDT------------------AF-ECGHMSCIKCALRM---------PQCPFCREEITTR 353 (358)
Q Consensus 311 ~~~C~IC~~~~~~~------------------v~-pCgH~~C~~C~~~~---------~~CP~CR~~i~~~ 353 (358)
...|+||++...+. .+ +|||.||..|+..+ ..||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 35899999986442 14 99999999999865 3699999988653
No 57
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.22 E-value=4.4e-06 Score=77.86 Aligned_cols=151 Identities=12% Similarity=0.153 Sum_probs=102.5
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChH-HHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcc
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPY-QEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVF 121 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Y-q~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f 121 (358)
..+++++.||-|.|=+ ...+ +++...+..++..++ ++ .+-++.|+.... .+|
T Consensus 17 ~~~DivfvlD~SgSM~--------------------~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~ 73 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIG--------------------YPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELI 73 (266)
T ss_dssp CCEEEEEEEECSTTTC--------------------HHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEE
T ss_pred CceeEEEEEECCCCcC--------------------hhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEE
Confidence 3589999999987742 0123 245666666677776 55 999999998632 234
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc---CCceEEEEEEeCCccCCcchhHHHHHHHH
Q 018272 122 SFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES---GGLHHVLVIITSGQVATGSQQEQETIRSI 198 (358)
Q Consensus 122 ~~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~---~~~Y~VLlIiTDG~i~d~~~~~~~t~~aI 198 (358)
+|+... -...+.++++-.+.-......|-|+...-|+.|.+..+.. ...-.++++||||..+| ..++.+++
T Consensus 74 ~l~~~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d----~~~~~~~a 147 (266)
T 4hqo_A 74 RLGSGQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS----KYRALEVA 147 (266)
T ss_dssp CTTSHH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC----HHHHHHHH
T ss_pred ecCCCC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC----chHHHHHH
Confidence 554210 0124455554444322224679999999999998776653 23467889999999988 67788888
Q ss_pred HHhcCCCeEEEEEeeCCCC-chhhhhccC
Q 018272 199 VDASSYPLSIVLVGVGDGP-WESIQKFHD 226 (358)
Q Consensus 199 v~AS~lPlSIiiVGVG~~~-f~~m~~LD~ 226 (358)
..+.+..+.|..||||++. -..|+.+-+
T Consensus 148 ~~l~~~gi~i~~iGiG~~~~~~~L~~iA~ 176 (266)
T 4hqo_A 148 NKLKQRNVRLAVIGIGQGINHQFNRLIAG 176 (266)
T ss_dssp HHHHHTTCEEEEEECSSSCCHHHHHHHHT
T ss_pred HHHHHCCCEEEEEecCcccCHHHHHHhhC
Confidence 8888888999999999864 444466654
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.21 E-value=1.8e-07 Score=77.52 Aligned_cols=44 Identities=32% Similarity=0.793 Sum_probs=37.7
Q ss_pred ccCCCccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~-------v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
.+...|+||++...++ +. +|||.||..|+.++ ..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4568999999987765 55 99999999999876 579999999885
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=8.1e-07 Score=68.70 Aligned_cols=43 Identities=28% Similarity=0.678 Sum_probs=34.5
Q ss_pred cCCCccCcccCCCC--------------e-ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018272 310 EAQRCCICCEDEKD--------------T-AF-ECGHMSCIKCALRM----PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~~~~--------------~-v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~ 352 (358)
+...|.||++...+ + ++ +|||.|+..|+.++ ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45689999987754 3 34 59999999999976 579999998764
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.12 E-value=6.4e-07 Score=78.33 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=41.0
Q ss_pred ccccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
.+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45677899999999999887 99999999999876 389999999876
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=7.8e-07 Score=70.78 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=36.4
Q ss_pred cccCCCccCcccCCCCeee-c-CCCCCchhhhhcC----------CCCCC--Cccc
Q 018272 308 VAEAQRCCICCEDEKDTAF-E-CGHMSCIKCALRM----------PQCPF--CREE 349 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~-p-CgH~~C~~C~~~~----------~~CP~--CR~~ 349 (358)
..+...|+||++...++|. + |||.||+.|+.++ ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999999887 6 9999999999876 27999 9865
No 62
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=1.4e-05 Score=71.18 Aligned_cols=141 Identities=13% Similarity=0.182 Sum_probs=97.9
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
..+++++.||-|.|=.. + ...++..+.|-..+..++..+..+.+-++.|+.... .+++++.
T Consensus 10 ~~~~iv~vlD~SgSM~~--~-------------d~~~~r~~~ak~~~~~~~~~~~~~~v~lv~F~~~~~---~~~~~~~- 70 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLA--Q-------------DVQPSRLEKAKRLISRLVDELDNDKVGMIVFAGDAF---TQLPITS- 70 (218)
T ss_dssp CCCEEEEEEECSGGGGC--C-------------SSSSCHHHHHHHHHHHHHHTCSSCEEEEEEESSSEE---EEEEEES-
T ss_pred CCCcEEEEEECCcCccc--c-------------cCCcCHHHHHHHHHHHHHHhCCCCeEEEEEECCCce---EeCCCCC-
Confidence 45789999999988431 1 112577888888888888888755999999998632 2244432
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCe
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPL 206 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPl 206 (358)
+.+.+.+.-...-+.....|.|++..-|+.|.+........-.++++||||..++ - ...+++..+.+..+
T Consensus 71 -----~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~----~-~~~~~~~~~~~~~i 140 (218)
T 3ibs_A 71 -----DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHE----G-GAVEAAKAAAEKGI 140 (218)
T ss_dssp -----CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCC----S-CHHHHHHHHHTTTE
T ss_pred -----CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCC----C-cHHHHHHHHHhcCC
Confidence 3445444444433444557999999999998877655433456888999998876 1 34555666667889
Q ss_pred EEEEEeeCCC
Q 018272 207 SIVLVGVGDG 216 (358)
Q Consensus 207 SIiiVGVG~~ 216 (358)
.|..||||..
T Consensus 141 ~v~~igig~~ 150 (218)
T 3ibs_A 141 QVSVLGVGMP 150 (218)
T ss_dssp EEEEEEESCT
T ss_pred EEEEEEecCC
Confidence 9999999974
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.06 E-value=1e-06 Score=78.62 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=39.2
Q ss_pred ccCCCccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH~~C~~C~~~~-----~~CP~CR~~i~~~ 353 (358)
.+...|+||++...++|. +|||.||+.|+.++ ..||+||.++...
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 356799999999999998 99999999999876 2599999998753
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.06 E-value=5.7e-07 Score=74.47 Aligned_cols=49 Identities=31% Similarity=0.802 Sum_probs=39.5
Q ss_pred ccCCCccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCCe--eecC
Q 018272 309 AEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITTR--RRVY 357 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~-------v~-pCgH~~C~~C~~~~----~~CP~CR~~i~~~--~~~f 357 (358)
.+...|+||++...+. +. +|||.||..|+.++ ..||+||.++... +++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4567899999976653 54 99999999999876 6899999999863 4444
No 65
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.02 E-value=4.8e-05 Score=65.67 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=93.3
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
..+++++.||-|.|=+ . .+ ....++++.+..-+ ..++ .+-++.|+.... .+++++.
T Consensus 6 ~~~div~vlD~SgSM~--------~---~~-------~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~---~~~~l~~ 62 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVL--------H---HW-------NEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT---TLMKLTE 62 (185)
T ss_dssp SEEEEEEEEECSGGGG--------G---GH-------HHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE---EEEEEEC
T ss_pred CCeeEEEEEeCCCChh--------h---hH-------HHHHHHHHHHHHHh--CCCCcEEEEEEEecCce---EEeccCC
Confidence 3578999999887632 1 01 11223333333333 2346 999999988642 2344442
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHh--c--CCceEEEEEEeCCccCCcchhHHHHHHHHHHh
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE--S--GGLHHVLVIITSGQVATGSQQEQETIRSIVDA 201 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~--~--~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~A 201 (358)
..+.+.++-.+.- .+...|.|+...-|+.+.+.... . ...-.++++||||..++. . ...+.+++..+
T Consensus 63 ------~~~~~~~~i~~l~-~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~-~-~~~~~~~~~~~ 133 (185)
T 3n2n_F 63 ------DREQIRQGLEELQ-KVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED-L-FFYSEREANRS 133 (185)
T ss_dssp ------CHHHHHHHHHHHH-TCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH-H-HHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHh-hhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC-c-ccchHHHHHHH
Confidence 4444444333322 22457999999999999886521 1 124578899999998761 1 11345666667
Q ss_pred cCCCeEEEEEeeCCCCchhhhhccC
Q 018272 202 SSYPLSIVLVGVGDGPWESIQKFHD 226 (358)
Q Consensus 202 S~lPlSIiiVGVG~~~f~~m~~LD~ 226 (358)
.+..+.|..||||+.+...|+.+=+
T Consensus 134 ~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 134 RDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHCCCEEEEEEeccCCHHHHHHHhC
Confidence 7788999999999888887777754
No 66
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.97 E-value=9e-05 Score=64.69 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=94.2
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~ 123 (358)
.+++++.||-|.|=+ .+.++++...+..++..++ .+ .+-++.|+.... ..|++
T Consensus 5 ~~div~vlD~SgSm~--------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l 61 (189)
T 1atz_A 5 PLDVILLLDGSSSFP--------------------ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPW 61 (189)
T ss_dssp CEEEEEEEECSSSSC--------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred ceeEEEEEeCCCCCC--------------------hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEec
Confidence 578999999987732 1345556666666666664 34 899999987632 23455
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccCCcchhHHHHHHHH
Q 018272 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQETIRSI 198 (358)
Q Consensus 124 ~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aI 198 (358)
+. ....+.+.++..+. +. ..|.|+...-|+.|.+..... ...-.+++|||||..+| +..+..+.+
T Consensus 62 ~~----~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~---~~~~~~~~~ 131 (189)
T 1atz_A 62 NV----VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---SVDAAADAA 131 (189)
T ss_dssp TC----CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---CCHHHHHHH
T ss_pred CC----CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---hHHHHHHHH
Confidence 32 12556666555443 22 368899999999999876542 12356778889997776 244444444
Q ss_pred HHhcCCCeEEEEEeeCC-CCchhhhhccC
Q 018272 199 VDASSYPLSIVLVGVGD-GPWESIQKFHD 226 (358)
Q Consensus 199 v~AS~lPlSIiiVGVG~-~~f~~m~~LD~ 226 (358)
.+..+.|..||||+ .+-..|+.+=+
T Consensus 132 ---~~~gi~v~~igvG~~~~~~~L~~iA~ 157 (189)
T 1atz_A 132 ---RSNRVTVFPIGIGDRYDAAQLRILAG 157 (189)
T ss_dssp ---HHTTEEEEEEEESSSSCHHHHHHHTG
T ss_pred ---HHCCCEEEEEEcCCcCCHHHHHHHHC
Confidence 45688999999998 46666766644
No 67
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.91 E-value=2.5e-05 Score=67.28 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=94.5
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
.+++++.||-|.|=+ + ... ...+.+...+..++. ++ .+-++.|+.... .++++.
T Consensus 6 ~~dvv~vlD~SgSM~--------~---~~~------~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~-- 60 (182)
T 1shu_X 6 AFDLYFVLDKSGSVA--------N---NWI------EIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT-- 60 (182)
T ss_dssp CEEEEEEEECSGGGG--------G---GHH------HHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE--
T ss_pred ceeEEEEEECCCCcc--------c---CHH------HHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC--
Confidence 578999999987742 0 111 122233333333433 45 999999988632 123443
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCC
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSY 204 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~l 204 (358)
.+.+.+.++-.. +..+...|.|++...|+.+.+...+. ...-.++++||||.-++. ......+++..+.+.
T Consensus 61 ----~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~--~~~~~~~~~~~~~~~ 133 (182)
T 1shu_X 61 ----GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL--VPSYAEKEAKISRSL 133 (182)
T ss_dssp ----CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT--HHHHHHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC--CchhHHHHHHHHHhC
Confidence 133333332222 22344679999999999999887654 234578899999998761 123345566666778
Q ss_pred CeEEEEEeeCCCCchhhhhccCC
Q 018272 205 PLSIVLVGVGDGPWESIQKFHDK 227 (358)
Q Consensus 205 PlSIiiVGVG~~~f~~m~~LD~~ 227 (358)
.+.|..||||+.+...|+.+-+.
T Consensus 134 ~i~i~~igvg~~~~~~L~~ia~~ 156 (182)
T 1shu_X 134 GASVYCVGVLDFEQAQLERIADS 156 (182)
T ss_dssp TCEEEEEECSSCCHHHHHHHSSS
T ss_pred CCEEEEEeCCcCCHHHHHHHhCC
Confidence 89999999999888888888653
No 68
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.88 E-value=0.00011 Score=63.88 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=89.6
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~ 123 (358)
.+++++.||-|.|=+ ...++++...+..++..++ +. .+-++.|+.... ..|+|
T Consensus 17 ~~divfvlD~SgSm~--------------------~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l 73 (178)
T 2xgg_A 17 QLDICFLIDSSGSIG--------------------IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDL 73 (178)
T ss_dssp CEEEEEEEECCTTTC--------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred CeeEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeC
Confidence 589999999987742 1235566666666777765 34 999999998642 23455
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccCCcchhHHHHHHHH
Q 018272 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQETIRSI 198 (358)
Q Consensus 124 ~~~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aI 198 (358)
+... ....+.+.++-.+. +. ..|.|+...-|+.|.+..... ...-.++++||||..++ -....+++
T Consensus 74 ~~~~--~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~----~~~~~~~~ 144 (178)
T 2xgg_A 74 QSPN--AVDKQLAAHAVLDM-PY--KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS----DFRTVRAA 144 (178)
T ss_dssp TSGG--GSCHHHHHHHHHHC-CC--CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH----HHHHSHHH
T ss_pred CCCC--ccCHHHHHHHHHhC-CC--CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC----CccHHHHH
Confidence 4211 11455555544433 21 468999999999998874321 12357889999999887 33455555
Q ss_pred HHhcCCCeEEEEEeeCCC
Q 018272 199 VDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 199 v~AS~lPlSIiiVGVG~~ 216 (358)
..+.+..+-|..||||+.
T Consensus 145 ~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 145 KEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHHHHTTCEEEEEECC--
T ss_pred HHHHHCCCEEEEEEcCCc
Confidence 555566899999999975
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.83 E-value=7.5e-06 Score=76.91 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=39.5
Q ss_pred ccccCCCccCcccCCCCeee--cCCCCCchhhhhcC------CCCCC--CccccCC
Q 018272 307 EVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPF--CREEITT 352 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~------~~CP~--CR~~i~~ 352 (358)
.......|+||++..+++|. .|||.||+.|+..+ ..||+ ||+.+..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34677899999999999885 99999999999976 25999 9998765
No 70
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.83 E-value=4.1e-05 Score=68.05 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=98.1
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
..+++++.||-|.|=+. . . .....+++..+..-+..++.+ .+-++.|+.... ..++++
T Consensus 14 ~~~div~vlD~SgSM~~--~---------~------~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~- 72 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGA--S---------N------FTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS- 72 (223)
T ss_dssp -CEEEEEEEECSTTTCH--H---------H------HHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT-
T ss_pred CceeEEEEEeCCCCCch--H---------H------HHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc-
Confidence 46899999999887431 0 0 123344555555556666677 999999998642 123332
Q ss_pred CCCCCCCHHHHHHHHHhcCCce-eeccCCChHHHHHHHHHHHHhcC--------CceEEEEEEeCCccCCcchhHHHHHH
Q 018272 126 NDSPCQGFEHVLECYRKNVPNV-QYFGPTSYAPMVEAAVDIVEESG--------GLHHVLVIITSGQVATGSQQEQETIR 196 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v-~l~gpt~fapvI~~a~~~~~~~~--------~~Y~VLlIiTDG~i~d~~~~~~~t~~ 196 (358)
.+.-...+.+.++-.+.-+.. ...|.|+...-|+.|.+...... ..-.++++||||..+.. .+.....+
T Consensus 73 -~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g-~~~~~~~~ 150 (223)
T 1q0p_A 73 -EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMG-GDPITVID 150 (223)
T ss_dssp -SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSS-SCTHHHHH
T ss_pred -cCCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCC-CChHHHHH
Confidence 222234556655554433321 24799999999999988865321 24578899999988720 01445555
Q ss_pred HHHHh----------cCCCeEEEEEeeCC-CCchhhhhccC
Q 018272 197 SIVDA----------SSYPLSIVLVGVGD-GPWESIQKFHD 226 (358)
Q Consensus 197 aIv~A----------S~lPlSIiiVGVG~-~~f~~m~~LD~ 226 (358)
.+.+. .+..+-|..||||+ .+...|+.+=.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 151 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp HHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred HHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 55442 34578999999996 46777777754
No 71
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.83 E-value=1.3e-05 Score=70.23 Aligned_cols=144 Identities=18% Similarity=0.235 Sum_probs=90.1
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccccc-CCC-ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF-DGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~y-D~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.+++++.||-|.|=+. ..++.+...+-.++..+ .++ .+-++.|+.... ..++++.
T Consensus 9 ~~div~vlD~SgSM~~--------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~ 65 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISS--------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE 65 (198)
T ss_dssp CEEEEEEEECCTTSCH--------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHH
T ss_pred CeeEEEEEECCCCCCH--------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCc
Confidence 4789999999877430 12445666666677777 466 999999998632 1233321
Q ss_pred CCCCCCCHHHHHHHHHhcCCcee-eccCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccC-CcchhHHHHHHHH
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDI-VEES----GGLHHVLVIITSGQVA-TGSQQEQETIRSI 198 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~-l~gpt~fapvI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~-d~~~~~~~t~~aI 198 (358)
... .+...+.+..+. ..|.|+....|+.+.+. .... ...-.++++||||..+ | .....+++
T Consensus 66 -------~~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~----~~~~~~~~ 133 (198)
T 1n3y_A 66 -------FRR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD----SLDYKDVI 133 (198)
T ss_dssp -------HHH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSC----SSCHHHHH
T ss_pred -------cCC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCC----cccHHHHH
Confidence 000 011222333333 57899999999999844 2221 2346788999999887 4 22233444
Q ss_pred HHhcCCCeEEEEEeeCCCC-----chhhhhccC
Q 018272 199 VDASSYPLSIVLVGVGDGP-----WESIQKFHD 226 (358)
Q Consensus 199 v~AS~lPlSIiiVGVG~~~-----f~~m~~LD~ 226 (358)
..+.+..+.|..||||+.. ...|+.+=.
T Consensus 134 ~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~ 166 (198)
T 1n3y_A 134 PMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 166 (198)
T ss_dssp HHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSC
T ss_pred HHHHHCCCEEEEEEccccccccccHHHHHHHHc
Confidence 5555678899999999864 566666654
No 72
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.83 E-value=0.00012 Score=64.87 Aligned_cols=146 Identities=8% Similarity=0.095 Sum_probs=94.4
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~ 123 (358)
.+++.+.||-|.|=+ .+.++++...+..++..++ ++ ++-+..|+.... ..|+|
T Consensus 13 ~~divfvlD~SgSm~--------------------~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l 69 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLS--------------------EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGL 69 (202)
T ss_dssp CEEEEEEEECBTTSC--------------------HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred cccEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEec
Confidence 588999999987732 1235566777777777776 45 999999998632 23455
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeecc-CCChHHHHHHHHHHH-Hhc--CCceEEEEEEeCCccCCcchhHHHHHHHHH
Q 018272 124 QENDSPCQGFEHVLECYRKNVPNVQYFG-PTSYAPMVEAAVDIV-EES--GGLHHVLVIITSGQVATGSQQEQETIRSIV 199 (358)
Q Consensus 124 ~~~~~~~~g~~gvl~~Y~~~l~~v~l~g-pt~fapvI~~a~~~~-~~~--~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv 199 (358)
+.. ...+.+.++-.+ ++. .+| .|+...-|+.|.+.. .+. ...-.++++||||.-++.. .+...+++.
T Consensus 70 ~~~----~~~~~~~~~i~~-l~~--~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~--~~~~~~~a~ 140 (202)
T 1ijb_A 70 KDR----KRPSELRRIASQ-VKY--AGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM--SRNFVRYVQ 140 (202)
T ss_dssp TCC----CCHHHHHHHHHT-CCC--CCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG--CTTHHHHHH
T ss_pred CCC----CCHHHHHHHHHh-CcC--CCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc--hHHHHHHHH
Confidence 421 234555554433 222 245 499999999987543 221 2345788999999876510 123444555
Q ss_pred HhcCCCeEEEEEeeCC-CCchhhhhcc
Q 018272 200 DASSYPLSIVLVGVGD-GPWESIQKFH 225 (358)
Q Consensus 200 ~AS~lPlSIiiVGVG~-~~f~~m~~LD 225 (358)
.+-+..+.|..||||+ .+...|+.+-
T Consensus 141 ~l~~~gi~i~~igvG~~~~~~~L~~iA 167 (202)
T 1ijb_A 141 GLKKKKVIVIPVGIGPHANLKQIRLIE 167 (202)
T ss_dssp HHHHTTEEEEEEEESTTSCHHHHHHHH
T ss_pred HHHHCCCEEEEEecCCcCCHHHHHHHh
Confidence 5556789999999996 5777777774
No 73
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.82 E-value=6.3e-06 Score=67.29 Aligned_cols=42 Identities=29% Similarity=0.596 Sum_probs=33.9
Q ss_pred cCCCccCcccCCCCe------------------ee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018272 310 EAQRCCICCEDEKDT------------------AF-ECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~------------------v~-pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
+...|.||++...+. ++ +|||.|+..|+.++ ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999876532 33 99999999999986 57999999854
No 74
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00016 Score=68.18 Aligned_cols=161 Identities=13% Similarity=0.125 Sum_probs=107.2
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc---cCCC-ceeEEeecCCCCCCCCccccCCC
Q 018272 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~---yD~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
.+|.||-|.|=.. + +..+|.++.+..++-.++.. -++. .+-+..|+++..... .+++
T Consensus 6 tViviD~S~SM~~-------~--------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl--~plT-- 66 (268)
T 4b4t_W 6 TVLVIDNSEYSRN-------G--------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL--STFT-- 66 (268)
T ss_dssp EEEEECCSSTTSS-------T--------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE--EEEE--
T ss_pred EEEEEECCHHHhC-------C--------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec--cCCc--
Confidence 4788998877421 0 12368888777776666664 3455 889999976532110 1221
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCC
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGSQQEQETIRSIVDASSY 204 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~l 204 (358)
.....++. .+..++..|-|++..-|+.|....++. ...-..++|+|||.+.+ +.++.++++.++.+.
T Consensus 67 ----~D~~~il~----aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~---~~~~l~~lak~lkk~ 135 (268)
T 4b4t_W 67 ----AEFGKILA----GLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD---SRDELIRLAKTLKKN 135 (268)
T ss_dssp ----SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS---CHHHHHHHHHHHHHH
T ss_pred ----chHHHHHH----HhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC---CHHHHHHHHHHHHHc
Confidence 23444443 456677899999999999999998754 23455667889998776 367888888888888
Q ss_pred CeEEEEEeeCCC--CchhhhhccCCCCCcccceeEeeec
Q 018272 205 PLSIVLVGVGDG--PWESIQKFHDKIPALQFDNFHFVNF 241 (358)
Q Consensus 205 PlSIiiVGVG~~--~f~~m~~LD~~~~~r~rDnvqFV~f 241 (358)
-|+|=+||+|.+ +-+.|+.|=+......-|+-+||..
T Consensus 136 gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 136 NVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp TEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 888888888864 5566777743222223467777765
No 75
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.75 E-value=0.00021 Score=64.14 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=88.1
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccc
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFS 122 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~ 122 (358)
..+++++.||-|.|=+ .++++...+..++..++ ++ .+-++.|+.... .+++
T Consensus 21 ~~~div~vlD~SgSM~----------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~ 75 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFN 75 (223)
T ss_dssp -CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEEC
T ss_pred CcceEEEEEECCCChh----------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEe
Confidence 3588999999887621 15566677777777775 45 999999987632 2345
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCcee-ecc-CCChHHHHHHHHHH-HHh----cCCceEEEEEEeCCccCCcchhHHHHH
Q 018272 123 FQENDSPCQGFEHVLECYRKNVPNVQ-YFG-PTSYAPMVEAAVDI-VEE----SGGLHHVLVIITSGQVATGSQQEQETI 195 (358)
Q Consensus 123 ~~~~~~~~~g~~gvl~~Y~~~l~~v~-l~g-pt~fapvI~~a~~~-~~~----~~~~Y~VLlIiTDG~i~d~~~~~~~t~ 195 (358)
++. ....+.++++-.. +. ..| .|+...-|+.|.+. ... ....-.++++||||.-++ -....
T Consensus 76 l~~----~~~~~~~~~~i~~----l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~----~~~~~ 143 (223)
T 2b2x_A 76 LNK----YSSTEEVLVAANK----IVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHD----NYRLK 143 (223)
T ss_dssp TTT----CCSHHHHHHHHTT----CCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTT----GGGHH
T ss_pred cCC----CCCHHHHHHHHHh----hhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC----CccHH
Confidence 421 1345566554433 33 256 49999999999875 221 123457889999999887 22345
Q ss_pred HHHHHhcCCCeEEEEEeeCCC
Q 018272 196 RSIVDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 196 ~aIv~AS~lPlSIiiVGVG~~ 216 (358)
+++..+.+..+-|..||||+.
T Consensus 144 ~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 144 QVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp HHHHHHHTTTEEEEEEEECGG
T ss_pred HHHHHHHHCCCEEEEEEecCc
Confidence 555556678899999999964
No 76
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=3.3e-05 Score=59.85 Aligned_cols=51 Identities=18% Similarity=0.467 Sum_probs=38.5
Q ss_pred cccccCCCccCcccCCC--Ceee-cCC-----CCCchhhhhcC------CCCCCCccccCCeeec
Q 018272 306 AEVAEAQRCCICCEDEK--DTAF-ECG-----HMSCIKCALRM------PQCPFCREEITTRRRV 356 (358)
Q Consensus 306 ~~~~~~~~C~IC~~~~~--~~v~-pCg-----H~~C~~C~~~~------~~CP~CR~~i~~~~~~ 356 (358)
....+...|.||++... +.++ ||+ |.|...|+.++ ..||+||..+....++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 33455679999997543 3445 996 99999999988 3799999998765443
No 77
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.70 E-value=0.00037 Score=61.97 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=87.9
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~ 123 (358)
.+.+++.||-|.|=+ .++.+...+..++..++ ++ .+-++.|+.... .++++
T Consensus 7 ~~div~vlD~SgSm~----------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l 61 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNL 61 (213)
T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECT
T ss_pred CccEEEEEECCCChh----------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEec
Confidence 578899999887621 14556666666666665 55 999999998632 23455
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeecc-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccCCcchhHHHHHHH
Q 018272 124 QENDSPCQGFEHVLECYRKNVPNVQYFG-PTSYAPMVEAAVDIV-EE----SGGLHHVLVIITSGQVATGSQQEQETIRS 197 (358)
Q Consensus 124 ~~~~~~~~g~~gvl~~Y~~~l~~v~l~g-pt~fapvI~~a~~~~-~~----~~~~Y~VLlIiTDG~i~d~~~~~~~t~~a 197 (358)
+. ....+.++++-....+ ..| .|+...-|+.|.+.. .. ....-.++++||||.-++ -....++
T Consensus 62 ~~----~~~~~~~~~~i~~l~~---~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~----~~~~~~~ 130 (213)
T 1pt6_A 62 NK----YSSTEEVLVAAKKIVQ---RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHD----NHRLKKV 130 (213)
T ss_dssp TT----CSSHHHHHHHHHTCCC---CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSC----SHHHHHH
T ss_pred cc----cCCHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC----CccHHHH
Confidence 21 1356666665543322 256 499999999998752 21 123467889999999887 3344555
Q ss_pred HHHhcCCCeEEEEEeeCCC
Q 018272 198 IVDASSYPLSIVLVGVGDG 216 (358)
Q Consensus 198 Iv~AS~lPlSIiiVGVG~~ 216 (358)
+..+.+..+-|..||||+.
T Consensus 131 ~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 131 IQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHHTTEEEEEEEECHH
T ss_pred HHHHHHCCCEEEEEEeccc
Confidence 5556667899999999964
No 78
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.67 E-value=0.00017 Score=72.90 Aligned_cols=154 Identities=11% Similarity=0.067 Sum_probs=100.6
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
..+++++.||-|.|=.+ ..+..+.+..++..++..+.++ .+-++.|+.... .+++++.
T Consensus 76 ~~~dvv~VLD~SGSM~~------------------~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~ 134 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDY------------------PRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGG 134 (464)
T ss_dssp CCEEEEEEEECCGGGGT------------------TTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSS
T ss_pred CCceEEEEEEcCcccCC------------------CCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCc
Confidence 34677777777766321 0355677788888888888777 999999998632 1233321
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCC
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYP 205 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lP 205 (358)
.....-..-.+..++.+..+...|-|++..-|+.+.+..++....-.++++||||..++. ..+......++....
T Consensus 135 --~l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~---~~~~l~~~~~a~~~~ 209 (464)
T 4fx5_A 135 --QLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE---TPADLARAIQSSIGN 209 (464)
T ss_dssp --SCEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS---CHHHHHHHHHHHTTT
T ss_pred --ccccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC---ChHHHHHHHHHhcCC
Confidence 000000111233334445566789999999999999987765445577888999998751 223344455566778
Q ss_pred eEEEEEeeCC-CCchhhhhccC
Q 018272 206 LSIVLVGVGD-GPWESIQKFHD 226 (358)
Q Consensus 206 lSIiiVGVG~-~~f~~m~~LD~ 226 (358)
+.|..||+|. .+...|++|-.
T Consensus 210 i~i~tiGiG~~~d~~~L~~IA~ 231 (464)
T 4fx5_A 210 FTADCRGIGEDWEPKELRKIAD 231 (464)
T ss_dssp CEEEEEEESSSSCHHHHHHHHH
T ss_pred CeEEEEEeCCccCHHHHHHHHH
Confidence 9999999995 47777877754
No 79
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.67 E-value=1.7e-05 Score=69.58 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=89.1
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC-CC-ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD-GD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD-~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.+++++.||-|.|=+ ...++++...+..++..++ ++ .+-++.|+.... .+|+++.
T Consensus 5 ~~div~vlD~SgSm~--------------------~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~ 61 (194)
T 1mf7_A 5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKE 61 (194)
T ss_dssp CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHH
T ss_pred CeeEEEEEeCCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCC
Confidence 478899999987742 1234556666666666665 45 999999998642 2344431
Q ss_pred -CCCCCCCHHHHHHHHHhcCCcee-eccCCChHHHHHHHHHHH-Hh-c---CCceEEEEEEeCCccC-CcchhHHHHHHH
Q 018272 126 -NDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIV-EE-S---GGLHHVLVIITSGQVA-TGSQQEQETIRS 197 (358)
Q Consensus 126 -~~~~~~g~~gvl~~Y~~~l~~v~-l~gpt~fapvI~~a~~~~-~~-~---~~~Y~VLlIiTDG~i~-d~~~~~~~t~~a 197 (358)
.+. .. +. +.+..+. ..|.|+...-|+.|.+.. .. . ...-.++++||||..+ | .....++
T Consensus 62 ~~~~--~~---~~----~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d----~~~~~~~ 128 (194)
T 1mf7_A 62 FQNN--PN---PR----SLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGD----PLGYEDV 128 (194)
T ss_dssp HHHS--CC---HH----HHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSC----SSCGGGT
T ss_pred cCCH--HH---HH----HHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC----chhhHHH
Confidence 010 11 22 2223333 479999999999998643 21 1 1235788999999887 5 2222334
Q ss_pred HHHhcCCCeEEEEEeeCCCC-----chhhhhccC
Q 018272 198 IVDASSYPLSIVLVGVGDGP-----WESIQKFHD 226 (358)
Q Consensus 198 Iv~AS~lPlSIiiVGVG~~~-----f~~m~~LD~ 226 (358)
+.++.+..+.|..||||+.. ...|+.+=+
T Consensus 129 ~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~ 162 (194)
T 1mf7_A 129 IPEADREGVIRYVIGVGDAFRSEKSRQELNTIAS 162 (194)
T ss_dssp HHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSC
T ss_pred HHHHHHCCCEEEEEEecccccccccHHHHHHHhC
Confidence 44445678999999999864 456666544
No 80
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.66 E-value=0.00019 Score=72.18 Aligned_cols=156 Identities=13% Similarity=0.205 Sum_probs=99.2
Q ss_pred CceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccccc---CCC-ceeEEeecCCCCCCCCcc
Q 018272 46 KVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVF 121 (358)
Q Consensus 46 l~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~y---D~d-~ip~~GFGa~~~~~~~~f 121 (358)
.+.+++++.||-|.|=+ ...+++|.+.+..+++.+ ..+ ++-+..|+.... .+|
T Consensus 7 ~~~~divfvlD~SgSM~--------------------~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~ 63 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVS--------------------ENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLM 63 (509)
T ss_dssp SSEEEEEEEEECSTTSC--------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEE
T ss_pred CCCeeEEEEEeCCCccc--------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeE
Confidence 35789999999987732 123455666666665555 677 999999988632 124
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCceee-ccCCChHHHHHHHHHHHHhc----C-------CceEEEEEEeCCccCCcch
Q 018272 122 SFQENDSPCQGFEHVLECYRKNVPNVQY-FGPTSYAPMVEAAVDIVEES----G-------GLHHVLVIITSGQVATGSQ 189 (358)
Q Consensus 122 ~~~~~~~~~~g~~gvl~~Y~~~l~~v~l-~gpt~fapvI~~a~~~~~~~----~-------~~Y~VLlIiTDG~i~d~~~ 189 (358)
++. .+.-...+.++++-.+.-..... .|.|+...-|+.|.+..+.. + ..-.++++||||.-++. .
T Consensus 64 ~l~--~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~-~ 140 (509)
T 2odp_A 64 SVL--NDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMG-G 140 (509)
T ss_dssp CTT--SGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSS-S
T ss_pred ecc--CCCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCC-C
Confidence 442 11122455555544433222111 37899999999998876431 1 13378899999977651 2
Q ss_pred hHHHHHHHHHHh------cCCCeEEEEEeeCC--CCchhhhhccCC
Q 018272 190 QEQETIRSIVDA------SSYPLSIVLVGVGD--GPWESIQKFHDK 227 (358)
Q Consensus 190 ~~~~t~~aIv~A------S~lPlSIiiVGVG~--~~f~~m~~LD~~ 227 (358)
+..+..+.+.+. .+..+.|..||||+ .+...|++|-+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~ 186 (509)
T 2odp_A 141 SPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSK 186 (509)
T ss_dssp CTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCC
T ss_pred ChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccC
Confidence 244555555542 25678899999998 588888888653
No 81
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.63 E-value=8.3e-06 Score=64.46 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=32.1
Q ss_pred cCCCccCcccCCCCee---e-cCCCCCchhhhhcC------------CCCCC--Cccc
Q 018272 310 EAQRCCICCEDEKDTA---F-ECGHMSCIKCALRM------------PQCPF--CREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v---~-pCgH~~C~~C~~~~------------~~CP~--CR~~ 349 (358)
+..+|+||++...... + +|||.||..|.... ..||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999876632 3 79999999998753 26999 9998
No 82
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.60 E-value=9.1e-06 Score=67.59 Aligned_cols=41 Identities=32% Similarity=0.656 Sum_probs=0.4
Q ss_pred CCCccCcccCCCC-----------------e-ee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018272 311 AQRCCICCEDEKD-----------------T-AF-ECGHMSCIKCALRM----PQCPFCREEIT 351 (358)
Q Consensus 311 ~~~C~IC~~~~~~-----------------~-v~-pCgH~~C~~C~~~~----~~CP~CR~~i~ 351 (358)
...|.||++...+ . ++ +|||.|+..|+.++ ..||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4689999987654 2 22 89999999999987 57999999854
No 83
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.58 E-value=0.00077 Score=60.11 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=103.9
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccccc---CCC-ceeEEeecCCCCCCCCccccCC
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~y---D~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.++++||.|.|=.. . +..+|..+.+...+..++..| .+. ++-+..|++...+ -+.+++
T Consensus 4 ~lvlvlD~S~SM~~-------------~--D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~--~~~plT- 65 (192)
T 2x5n_A 4 ATMILIDNSEWMIN-------------G--DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ--VLSTLT- 65 (192)
T ss_dssp EEEEEECCSGGGGC-------------T--TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCC--EEEEEE-
T ss_pred EEEEEEECCHhhcc-------------C--CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcE--EecCCC-
Confidence 57889999877321 1 123688888887777666544 344 8999999875221 112333
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC--CceE-EEEEEeCCccCCcchhHHHHHHHHHHhc
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHH-VLVIITSGQVATGSQQEQETIRSIVDAS 202 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~--~~Y~-VLlIiTDG~i~d~~~~~~~t~~aIv~AS 202 (358)
...+.+++ .+..+...|.|++..-|+.|.+..++.. .... |+|+++|+.-.| ..+..+++..+.
T Consensus 66 -----~d~~~i~~----~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~----~~~~~~~a~~lk 132 (192)
T 2x5n_A 66 -----RDYGKFLS----AMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED----EKNLIRLAKRMK 132 (192)
T ss_dssp -----SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSC----HHHHHHHHHHHH
T ss_pred -----CCHHHHHH----HHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCC----chhHHHHHHHHH
Confidence 13444443 3344677899999999999998877642 2233 455555554344 667778888888
Q ss_pred CCCeEEEEEeeCCCCchh-hhhccCCCCCcccceeEeeecccc
Q 018272 203 SYPLSIVLVGVGDGPWES-IQKFHDKIPALQFDNFHFVNFTAI 244 (358)
Q Consensus 203 ~lPlSIiiVGVG~~~f~~-m~~LD~~~~~r~rDnvqFV~f~~~ 244 (358)
+.-+.|.+||+|..+... |+.|=+.... -|+-+||...+.
T Consensus 133 ~~gi~v~~Ig~G~~~~~~~l~~la~~~n~--~~~s~~~~~~~~ 173 (192)
T 2x5n_A 133 KNNVAIDIIHIGELQNESALQHFIDAANS--SDSCHLVSIPPS 173 (192)
T ss_dssp HTTEEEEEEEESCC---CHHHHHHHHHCS--TTCCEEEEECCC
T ss_pred HCCCEEEEEEeCCCCccHHHHHHHHhccC--CCceEEEEecCc
Confidence 889999999999886532 7777432221 278888865544
No 84
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.56 E-value=0.0011 Score=58.21 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=87.9
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCcccc
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~~ 123 (358)
.+++++.||-|.|=+ .++++...+..++..++ ++ ++-++.|+.... .+|+|
T Consensus 6 ~~div~vlD~SgSm~----------------------~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l 60 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY----------------------PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNL 60 (200)
T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred cccEEEEEECCCCcc----------------------cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeC
Confidence 478889999886621 14566677777777776 45 999999998632 23555
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeecc-CCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccCCcchhHHHHHHH
Q 018272 124 QENDSPCQGFEHVLECYRKNVPNVQYFG-PTSYAPMVEAAVDI-VEES----GGLHHVLVIITSGQVATGSQQEQETIRS 197 (358)
Q Consensus 124 ~~~~~~~~g~~gvl~~Y~~~l~~v~l~g-pt~fapvI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~t~~a 197 (358)
+. ....+.++++-.+..+ ..| .|+...-|+.|.+. .... ...-.++++||||.-+| .....++
T Consensus 61 ~~----~~~~~~~~~~i~~l~~---~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~----~~~~~~~ 129 (200)
T 1v7p_C 61 NT----YKTKEEMIVATSQTSQ---YGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHD----GSMLKAV 129 (200)
T ss_dssp TT----CSSHHHHHHHHHHCCC---CCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSC----GGGHHHH
T ss_pred CC----cCCHHHHHHHHHhhhc---cCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCC----cccHHHH
Confidence 41 2356666666554322 235 59999999999885 2221 12457889999999887 3233444
Q ss_pred HHHhcCCCeEEEEEeeCC
Q 018272 198 IVDASSYPLSIVLVGVGD 215 (358)
Q Consensus 198 Iv~AS~lPlSIiiVGVG~ 215 (358)
+..+.+..+.|..||||+
T Consensus 130 ~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 130 IDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp HHHHHHTTEEEEEEEECH
T ss_pred HHHHHHCCCEEEEEEecc
Confidence 555556789999999963
No 85
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.32 E-value=0.00076 Score=67.39 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=96.2
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhccc---ccCCC-ceeEEeecCCCCCCCCccccC
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELV---LFDGD-CIRCYGFGDDTTRDEGVFSFQ 124 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~---~yD~d-~ip~~GFGa~~~~~~~~f~~~ 124 (358)
+++++.||-|.|=+ .+.++.+...+..++. .+..+ .+-++.|+.... ..+.++
T Consensus 2 ~div~vlD~SgSM~--------------------~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIG--------------------ASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS 58 (497)
T ss_dssp EEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTT
T ss_pred eeEEEEEECCCCcc--------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeeccc
Confidence 67889999987742 1334445544444544 45556 999999997532 123332
Q ss_pred CCCCCCCCHHHHHHHHHhcCCce-eeccCCChHHHHHHHHHHHHhc--------CCceEEEEEEeCCccCCcchhHHHHH
Q 018272 125 ENDSPCQGFEHVLECYRKNVPNV-QYFGPTSYAPMVEAAVDIVEES--------GGLHHVLVIITSGQVATGSQQEQETI 195 (358)
Q Consensus 125 ~~~~~~~g~~gvl~~Y~~~l~~v-~l~gpt~fapvI~~a~~~~~~~--------~~~Y~VLlIiTDG~i~d~~~~~~~t~ 195 (358)
.+.-...+.+.++-.+.-+.- ...|.|+...-|+.|.+..... ...-.++++||||.-++ ..+..+..
T Consensus 59 --~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~-g~~~~~~~ 135 (497)
T 1rrk_A 59 --EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM-GGDPITVI 135 (497)
T ss_dssp --SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCS-SSCTHHHH
T ss_pred --cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCccc-CCChhHHH
Confidence 233345666666655544322 2567899999999998886311 12356889999998774 11245666
Q ss_pred HHHHHhc----------CCCeEEEEEeeCC-CCchhhhhccC
Q 018272 196 RSIVDAS----------SYPLSIVLVGVGD-GPWESIQKFHD 226 (358)
Q Consensus 196 ~aIv~AS----------~lPlSIiiVGVG~-~~f~~m~~LD~ 226 (358)
+.+.+.. +..+-|..||||+ .+...|+.|=+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 136 DEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp HHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred HHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 6665542 2278899999997 56777777754
No 86
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.10 E-value=9.9e-05 Score=64.22 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=86.0
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc-cCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL-FDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~-yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
..++++.||-|.|=. | +..+.+...+..++.. +..+ .+-++.|+..... .++++.
T Consensus 5 ~~~vv~vlD~SgSM~--~------------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~--~~~~~~- 61 (189)
T 2x31_A 5 DRVLIFAVDASGSAA--V------------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ--VLLQPS- 61 (189)
T ss_dssp CCEEEEEEECCTTSC--C--------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC--BCTTTC-
T ss_pred CeEEEEEEECCCCCC--c------------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce--EecCCC-
Confidence 468899999998732 1 1122333344444433 3566 9999999963221 122222
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccCCcchhH--------HHHH
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATGSQQE--------QETI 195 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~--------~~t~ 195 (358)
.+.+.+.+.- ..+...|-|++..-|+.+.+..++.. ..-.++++||||..++. .+- +++.
T Consensus 62 -----~~~~~~~~~i----~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~-~~~~~~~~~~~~~~~ 131 (189)
T 2x31_A 62 -----RSLTQTKRQL----QGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIA-LDGTANRELAGEQAT 131 (189)
T ss_dssp -----SCHHHHHHHH----HHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSC-CTHHHHHGGGTCCCE
T ss_pred -----CCHHHHHHHH----hcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCC-CCccccccchhHHHH
Confidence 2455554433 33446799999999999999877642 23567889999987752 000 0111
Q ss_pred HHHHHhcCCCeEEEEEeeCCCCchhhhhcc
Q 018272 196 RSIVDASSYPLSIVLVGVGDGPWESIQKFH 225 (358)
Q Consensus 196 ~aIv~AS~lPlSIiiVGVG~~~f~~m~~LD 225 (358)
+++..+.+..+.|+.||+|+.+...|++|-
T Consensus 132 ~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 132 KVARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp EEEECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 222233345678888999987655555553
No 87
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.07 E-value=0.00018 Score=52.72 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=37.4
Q ss_pred CCCccCcccCCCCeee--cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018272 311 AQRCCICCEDEKDTAF--ECGHMSCIKCALRM----PQCPFCREEITTR 353 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~----~~CP~CR~~i~~~ 353 (358)
...|+||++...++++ +|||.+|+.|+.++ ..||++++++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 3689999999999876 79999999999987 5699999998763
No 88
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.06 E-value=0.00099 Score=69.97 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=96.4
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
..+++++.||-|.|=+ .. ....-.+++..+..-|..++.. +|-+.-|+.... .+++|+.
T Consensus 242 ~~~div~vlD~SgSM~--------~~---------~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIG--------AS---------DFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp CEEEEEEEEECSTTTC--------HH---------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred CceeEEEEeccCCccc--------cc---------chHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 4689999999887742 10 0123344444544445555565 899999988532 2344432
Q ss_pred CCCCCCCHHHHHHHHHhcCCcee-eccCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCccCCcchhHHHHHH
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEE--------SGGLHHVLVIITSGQVATGSQQEQETIR 196 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~-l~gpt~fapvI~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~~~~~~t~~ 196 (358)
. .-...+.++++..+.-.... ..|-|+...-|+.|.+.... ....-.++++||||.-+. ..+..+..+
T Consensus 302 ~--~~~~~~~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~-g~~p~~~~~ 378 (741)
T 3hrz_D 302 A--DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM-GGDPITVID 378 (741)
T ss_dssp G--GGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCS-SSCTHHHHH
T ss_pred c--CCcCHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCcccc-CCCchHHHH
Confidence 1 11244555554433221111 67899999999999888621 012357889999997653 112456666
Q ss_pred HHHH----------hcCCCeEEEEEeeCC-CCchhhhhccCC
Q 018272 197 SIVD----------ASSYPLSIVLVGVGD-GPWESIQKFHDK 227 (358)
Q Consensus 197 aIv~----------AS~lPlSIiiVGVG~-~~f~~m~~LD~~ 227 (358)
.|.+ +.+..+.|..||||+ .+...|++|-..
T Consensus 379 ~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~ 420 (741)
T 3hrz_D 379 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASK 420 (741)
T ss_dssp HHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCC
T ss_pred HHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhcC
Confidence 5653 334678999999997 677778777653
No 89
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.95 E-value=0.002 Score=56.86 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=90.4
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccC---CC-ceeEEeecCCCCCCCCccc
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFS 122 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD---~d-~ip~~GFGa~~~~~~~~f~ 122 (358)
..+++.+.||-|.|=+ .+.++++...+-.++..++ ++ ++-+..|+.... ..|+
T Consensus 20 ~~~DivfvlD~S~Sm~--------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~ 76 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIG--------------------EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYP 76 (199)
T ss_dssp CCCEEEEEEECCTTTC--------------------HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEEC
T ss_pred CCcCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEe
Confidence 3478899999886632 1235556666666777774 55 999999998643 2355
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCceeeccC-CChHHHHHHHHHHH-Hh-c---CCceEEEEEEeCCccCCcchhHHHHHH
Q 018272 123 FQENDSPCQGFEHVLECYRKNVPNVQYFGP-TSYAPMVEAAVDIV-EE-S---GGLHHVLVIITSGQVATGSQQEQETIR 196 (358)
Q Consensus 123 ~~~~~~~~~g~~gvl~~Y~~~l~~v~l~gp-t~fapvI~~a~~~~-~~-~---~~~Y~VLlIiTDG~i~d~~~~~~~t~~ 196 (358)
|+. ....+.++++-.+. +. ..|. |+...-|+.+.+.. .. . ...-.++++||||...|- ..
T Consensus 77 l~~----~~~~~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~---v~---- 142 (199)
T 3zqk_A 77 FSE----AQSKGDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDE---IK---- 142 (199)
T ss_dssp TTS----CCCHHHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSC---CC----
T ss_pred cCC----cCCHHHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchH---HH----
Confidence 542 13556666665543 21 3464 99999998887642 11 1 122468899999987771 11
Q ss_pred HHHHhcCCCeEEEEEeeC-CCCchhhhhccC
Q 018272 197 SIVDASSYPLSIVLVGVG-DGPWESIQKFHD 226 (358)
Q Consensus 197 aIv~AS~lPlSIiiVGVG-~~~f~~m~~LD~ 226 (358)
++ ...+.|.-|||| +.+...|+.+=.
T Consensus 143 ---~~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 ---RL-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp ---CC-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred ---HH-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 11 257889999999 678888888865
No 90
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.71 E-value=0.00066 Score=54.57 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=31.5
Q ss_pred CccCcccCCCCee-e-cCCCCCchhhhhc-----CCCCCCCccccCCee
Q 018272 313 RCCICCEDEKDTA-F-ECGHMSCIKCALR-----MPQCPFCREEITTRR 354 (358)
Q Consensus 313 ~C~IC~~~~~~~v-~-pCgH~~C~~C~~~-----~~~CP~CR~~i~~~~ 354 (358)
.|.+|--..+.-. + ||.|.||..|+.. .+.||.||.+|.++-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4777764444422 3 9999999999965 367999999998753
No 91
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.43 E-value=0.0033 Score=69.78 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=93.3
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC--ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD--CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d--~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.+++.+.||-+.|=+ .+.++++...+..+++.|+.+ ++-+..|+.... ..|+|+.
T Consensus 130 ~~DIvfvlD~SgSm~--------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~ 186 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSIS--------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE 186 (1095)
T ss_dssp CEEEEEEEECCTTSC--------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHH
T ss_pred CccEEEEEcCCCCCC--------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcc
Confidence 478888888876632 244667777778888888876 999999998643 2344431
Q ss_pred --CCCCCCCHHHHHHHHHhcCCce-eeccCCChHHHHHHHHHHHH-h-c---CCceEEEEEEeCCccC-CcchhHHHHHH
Q 018272 126 --NDSPCQGFEHVLECYRKNVPNV-QYFGPTSYAPMVEAAVDIVE-E-S---GGLHHVLVIITSGQVA-TGSQQEQETIR 196 (358)
Q Consensus 126 --~~~~~~g~~gvl~~Y~~~l~~v-~l~gpt~fapvI~~a~~~~~-~-~---~~~Y~VLlIiTDG~i~-d~~~~~~~t~~ 196 (358)
+.. .+ .+.+..+ .+.|-|+...-|+.|.+..- . . ...-.|+++||||..+ | .....+
T Consensus 187 ~~~~~---~l-------~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d----~~~~~~ 252 (1095)
T 3k6s_A 187 FRRSS---NP-------LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD----SLDYKD 252 (1095)
T ss_dssp HHSCS---CG-------GGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSC----SSCHHH
T ss_pred cCCHH---HH-------HHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCC----chhHHH
Confidence 111 11 1222233 35788999999999877532 1 1 1235789999999984 4 333444
Q ss_pred HHHHhcCCCeEEEEEeeCCC-----CchhhhhccC
Q 018272 197 SIVDASSYPLSIVLVGVGDG-----PWESIQKFHD 226 (358)
Q Consensus 197 aIv~AS~lPlSIiiVGVG~~-----~f~~m~~LD~ 226 (358)
++.++.+.-+-|..||||+. +.+.|+++=+
T Consensus 253 ~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 253 VIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp HHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred HHHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 55555555788999999997 6777777754
No 92
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.24 E-value=0.016 Score=50.00 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCC-C-ceeEEeecCCCCCCCCccccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG-D-CIRCYGFGDDTTRDEGVFSFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~-d-~ip~~GFGa~~~~~~~~f~~~~ 125 (358)
.+++++.||-|.|=+ ...++++...+..++..+++ + .+-+..|+.... ..|+|+.
T Consensus 2 ~~divfvlD~S~Sm~--------------------~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~ 58 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSD 58 (179)
T ss_dssp CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHH
T ss_pred CccEEEEEeCCCCCC--------------------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcc
Confidence 367889999887742 12345566666666666654 4 899999998643 1244431
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHH-Hhc----CCceEEEEEEeCCccCCcchhHHHHHHHHHH
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIV-EES----GGLHHVLVIITSGQVATGSQQEQETIRSIVD 200 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~-~~~----~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~ 200 (358)
.. .-..+.. ..+.++. +.|.|+...-|+.|.+.. ... ...-.++++||||.-+|. .. .
T Consensus 59 ~~-~~~~~~~----~~~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~---~~-~------ 121 (179)
T 1mjn_A 59 YV-KRKDPDA----LLKHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDS---GN-I------ 121 (179)
T ss_dssp HH-HHCCHHH----HHTTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSC---SC-C------
T ss_pred cC-CHHHHHH----HHHhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCC---cc-h------
Confidence 00 0011222 2233443 358899999999988632 211 124578899999998872 11 0
Q ss_pred hcCCCeEEEEEeeCCCC
Q 018272 201 ASSYPLSIVLVGVGDGP 217 (358)
Q Consensus 201 AS~lPlSIiiVGVG~~~ 217 (358)
+...-+-|..||||+..
T Consensus 122 ~~~~~i~i~~igvG~~~ 138 (179)
T 1mjn_A 122 DAAKDIIRYIIGIGKHF 138 (179)
T ss_dssp GGGTTSEEEEEEESGGG
T ss_pred HHHCCCEEEEEEccccc
Confidence 12345778899999764
No 93
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.06 E-value=0.032 Score=57.06 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=83.7
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
...++++.||-|+|=.. .. . +++ -.+.++...++ .+..-..|.+-++.|+.... ..++.++
T Consensus 367 ~~~~v~lvvD~SgSM~~--~~-~-~~~----------l~~~~~Aa~l~-~~~~~~~d~vglv~Fs~~~~----~~~~t~~ 427 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQ--RV-L-GSI----------LNASVVAAAMC-MLVARTEKDSHMVAFSDEML----PCPITVN 427 (538)
T ss_dssp CCCCEEEEEECSGGGGS--BS-T-TSS----------CBHHHHHHHHH-HHHHHHCSSEEEEEESSSEE----CCSCCTT
T ss_pred CCceEEEEEECccccCC--CC-C-CCc----------HHHHHHHHHHH-HHHhccCCceEEEEECCCce----EcCCCCc
Confidence 35789999999988432 10 0 111 12333322222 22222334788899986321 1233332
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCe
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPL 206 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPl 206 (358)
.++..+++.-.. + ..|-|+++..|..+.+. ....-++++||||..++...+..+..+.+.+..+.++
T Consensus 428 ----~~l~~~l~~l~~----~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v 494 (538)
T 1yvr_A 428 ----MLLHEVVEKMSD----I-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPA 494 (538)
T ss_dssp ----SCHHHHHHHHTT----C-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCC
T ss_pred ----ccHHHHHHHHhc----C-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCc
Confidence 246666554432 2 47889999988888665 2345678899999776411113455666666667889
Q ss_pred EEEEEeeCCCCch
Q 018272 207 SIVLVGVGDGPWE 219 (358)
Q Consensus 207 SIiiVGVG~~~f~ 219 (358)
.+++||+|.....
T Consensus 495 ~l~~igig~~~~~ 507 (538)
T 1yvr_A 495 KLIVCAMTSNGFS 507 (538)
T ss_dssp EEEEEECSSSSEE
T ss_pred EEEEEEecCCCCc
Confidence 9999999987654
No 94
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.54 E-value=0.059 Score=56.06 Aligned_cols=153 Identities=13% Similarity=0.164 Sum_probs=96.5
Q ss_pred eceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc----cCCCceeEEeecCCCCCC----CCcc
Q 018272 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL----FDGDCIRCYGFGDDTTRD----EGVF 121 (358)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~----yD~d~ip~~GFGa~~~~~----~~~f 121 (358)
.++++||.+.|=.. + .. +...++.+.|++.+..+++. -..|++-++.||...+.. .+++
T Consensus 37 ~ivf~IDvS~SM~~---~--------d~--~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~ 103 (609)
T 1jey_A 37 SLIFLVDASKAMFE---S--------QS--EDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIY 103 (609)
T ss_dssp EEEEEEECSGGGGC---C--------CS--SSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEE
T ss_pred EEEEEEECCHHHcC---C--------CC--CCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeE
Confidence 48999999876321 0 00 12468999999999988885 444599999999986421 2332
Q ss_pred ccCC-CCCCCCCHHHHHHHHHhcCC---------ceeeccCCChHHHHHHHHHHHHhcCCc--eEEEEEEeCCccC-Cc-
Q 018272 122 SFQE-NDSPCQGFEHVLECYRKNVP---------NVQYFGPTSYAPMVEAAVDIVEESGGL--HHVLVIITSGQVA-TG- 187 (358)
Q Consensus 122 ~~~~-~~~~~~g~~gvl~~Y~~~l~---------~v~l~gpt~fapvI~~a~~~~~~~~~~--Y~VLlIiTDG~i~-d~- 187 (358)
-+.+ ..+ +.+ .++..++.+. .+.....|.+...|.-|+++.++...+ --++++||||.-. ..
T Consensus 104 v~~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~ 179 (609)
T 1jey_A 104 VLQELDNP---GAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGND 179 (609)
T ss_dssp EEEEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTC
T ss_pred EEecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCc
Confidence 2221 112 222 2233333221 011246799999999999988765332 3588899999643 10
Q ss_pred chhHHHHHHHHHHhcCCCeEEEEEeeCCCC-ch
Q 018272 188 SQQEQETIRSIVDASSYPLSIVLVGVGDGP-WE 219 (358)
Q Consensus 188 ~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~-f~ 219 (358)
.........+..++..+-|.|.+||||..+ |+
T Consensus 180 ~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 180 SAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred hHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 000135677777888899999999999764 44
No 95
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.39 E-value=0.017 Score=45.86 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=39.9
Q ss_pred ccccccCCCccCcccCCCCeeecCCCCCchhhhhcC----CCCCCCccccCCeeec
Q 018272 305 SAEVAEAQRCCICCEDEKDTAFECGHMSCIKCALRM----PQCPFCREEITTRRRV 356 (358)
Q Consensus 305 ~~~~~~~~~C~IC~~~~~~~v~pCgH~~C~~C~~~~----~~CP~CR~~i~~~~~~ 356 (358)
.+.......|+.|+-..+.-+--.-|.+|..|+..| ..||+|..++...+++
T Consensus 22 d~s~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CccccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 344556689999997666333344577999999988 4699999999988775
No 96
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=95.32 E-value=0.058 Score=55.48 Aligned_cols=144 Identities=12% Similarity=0.096 Sum_probs=93.5
Q ss_pred eeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccc---cCCC-ceeEEeecCCCCCC-------
Q 018272 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRD------- 117 (358)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~---yD~d-~ip~~GFGa~~~~~------- 117 (358)
-.++++||.+.|=.. + +....+..+.|...+..+++. ..+. .+-+..||...+..
T Consensus 8 e~iv~~iDvS~SM~~-------~-------d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~ 73 (565)
T 1jey_B 8 AAVVLCMDVGFTMSN-------S-------IPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQ 73 (565)
T ss_dssp EEEEEEEECCGGGGC-------C-------BTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTC
T ss_pred eEEEEEEECChHhcc-------c-------CCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccC
Confidence 478999999877321 0 011468999999999988883 4454 99999999875321
Q ss_pred -CCccccCC-CCCCCCCHHHHHHHHHhcCCceeec-cCCChHHHHHHHHHHHHhc--CCce--EEEEEEeCCccCCcchh
Q 018272 118 -EGVFSFQE-NDSPCQGFEHVLECYRKNVPNVQYF-GPTSYAPMVEAAVDIVEES--GGLH--HVLVIITSGQVATGSQQ 190 (358)
Q Consensus 118 -~~~f~~~~-~~~~~~g~~gvl~~Y~~~l~~v~l~-gpt~fapvI~~a~~~~~~~--~~~Y--~VLlIiTDG~i~d~~~~ 190 (358)
.+++-+.+ ..+ . ..+++...+. ++.+ +.|.+...|..|++..++. ..++ -++++||||.-.- +
T Consensus 74 y~~i~vl~~l~~~---~-~~~l~~l~~~---l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~---~ 143 (565)
T 1jey_B 74 YQNITVHRHLMLP---D-FDLLEDIESK---IQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF---S 143 (565)
T ss_dssp STTEEEEEEEECC---C-HHHHHHHHTT---CCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC---C
T ss_pred CCceEEeecCCCC---C-HHHHHHHHhh---ccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC---C
Confidence 12211111 011 1 1344444442 2333 6799999999999987765 3333 5778889996552 0
Q ss_pred HHHHHHHHHHhcCCCeEEE-EEeeCCC
Q 018272 191 EQETIRSIVDASSYPLSIV-LVGVGDG 216 (358)
Q Consensus 191 ~~~t~~aIv~AS~lPlSIi-iVGVG~~ 216 (358)
..+..+++.++.+.-+.|. +||+|.+
T Consensus 144 ~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 144 KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 2356667777888899999 8999864
No 97
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.25 E-value=0.0065 Score=59.12 Aligned_cols=45 Identities=31% Similarity=0.632 Sum_probs=34.9
Q ss_pred ccCCCccCcccCCCC-ee-------e-cCCCCCchhhhhcC---------------CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKD-TA-------F-ECGHMSCIKCALRM---------------PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~-~v-------~-pCgH~~C~~C~~~~---------------~~CP~CR~~i~~~ 353 (358)
.....|.||++...+ .. - .|||.|-..|+.++ ..||.||++|+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999986555 11 1 69999999999875 2599999998764
No 98
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=95.11 E-value=0.084 Score=54.03 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=83.3
Q ss_pred ceeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCCceeEEeecCCCCCCCCccccCCC
Q 018272 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
...+++|+||-|+|=.+. + ... ....+ +.++...++-++.. ..|.+-++.|++.... .++.+.
T Consensus 361 ~~~~~lv~vDvSgSM~~~------~-~~~----~~k~~-~~e~Aa~la~~~~r-~~d~v~lv~Fs~~~~~----~~~~~~ 423 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCG------D-VAG----VPGLT-PNMAAAAMSLIALR-TEPDALTMGFAEQFRP----LGITPR 423 (535)
T ss_dssp CCSEEEEEECCSGGGGSC------C-GGG----CTTCC-HHHHHHHHHHHHHH-HSSEEEEEEEBSSEEE----CCCCTT
T ss_pred CCceEEEEEECCccccCC------C-CCC----CCccc-HHHHHHHHHHHHcC-cCCceEEEEECCcceE----cCCCcc
Confidence 357899999999884310 0 001 11234 34444455533332 3336788899874321 123222
Q ss_pred CCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCe
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETIRSIVDASSYPL 206 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPl 206 (358)
.++.++++ .+... ..|.|+++..|+.+.+ .....-+++|||||+..+...+..+.++...+..+.++
T Consensus 424 ----~~l~~~l~---~l~~~--~~ggTdi~~~l~~a~~----~~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~ 490 (535)
T 2nvo_A 424 ----DTLESAMQ---KAQSV--SFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAP 490 (535)
T ss_dssp ----CCHHHHHH---HTCCS--SBCCCCTTHHHHHHHH----TTCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCC
T ss_pred ----hhHHHHHH---HHhhC--CCCCccHHHHHHHHHH----hcCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCC
Confidence 35555444 33222 3689999998877633 23456788999999765421113455666666667899
Q ss_pred EEEEEeeCCCCc
Q 018272 207 SIVLVGVGDGPW 218 (358)
Q Consensus 207 SIiiVGVG~~~f 218 (358)
-+++||||....
T Consensus 491 klv~i~l~~~~~ 502 (535)
T 2nvo_A 491 KLIVVGLTATEF 502 (535)
T ss_dssp EEEEEETTCSCC
T ss_pred eEEEEeccCCCc
Confidence 999999998643
No 99
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.80 E-value=0.025 Score=42.92 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=36.1
Q ss_pred ccCCCccCcccCCCCeee--cCCCCCchhhhhcC------CCCCCCccccCCe
Q 018272 309 AEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPFCREEITTR 353 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~------~~CP~CR~~i~~~ 353 (358)
+....|.||++....-.. .|+|.|=..|+.++ ..||+||......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 345799999998876544 89999999999865 5799999987653
No 100
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.18 E-value=0.018 Score=41.74 Aligned_cols=44 Identities=25% Similarity=0.560 Sum_probs=32.2
Q ss_pred ccCCCccCcccCCCCeee-cCCC-----CCchhhhhcC------CCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF-ECGH-----MSCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pCgH-----~~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
++...|.||++...+..+ ||.+ .+=..|+.++ ..||+||..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456799999987655555 8654 3556788876 569999998753
No 101
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.97 E-value=0.13 Score=40.37 Aligned_cols=30 Identities=27% Similarity=0.591 Sum_probs=23.8
Q ss_pred cCCCccCcccC-CCCee---ecCCCCCchhhhhc
Q 018272 310 EAQRCCICCED-EKDTA---FECGHMSCIKCALR 339 (358)
Q Consensus 310 ~~~~C~IC~~~-~~~~v---~pCgH~~C~~C~~~ 339 (358)
+...|.||.+. ..+++ +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35789999974 45544 39999999999986
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.69 E-value=0.66 Score=35.69 Aligned_cols=31 Identities=35% Similarity=0.808 Sum_probs=26.0
Q ss_pred ccCCCccCcccCCCCeee-cC----CCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTAF-EC----GHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-pC----gH~~C~~C~~~ 339 (358)
.....|.+|.++..+.-| .| +|.||..|...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 456899999999999887 66 47799999884
No 103
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=72.83 E-value=2.5 Score=38.99 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=27.2
Q ss_pred ceEEEEEEeCCccCCcchhHHHHHHHHHHhcCCCeEEEEEeeCCCC
Q 018272 172 LHHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSIVLVGVGDGP 217 (358)
Q Consensus 172 ~Y~VLlIiTDG~i~d~~~~~~~t~~aIv~AS~lPlSIiiVGVG~~~ 217 (358)
.--++++||||.-+- .. .-.++...|...-+-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~-g~---~p~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI-GP---DPVEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS-SS---CHHHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC-CC---CHHHHHHHHHHCCCEEEEEEecCCc
Confidence 356788999997542 00 1233334455667999999998653
No 104
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=72.12 E-value=11 Score=40.80 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=30.2
Q ss_pred eeeccCCChHHHHHHHHHHHHh-c-CCceEEEEEEeCCccCC
Q 018272 147 VQYFGPTSYAPMVEAAVDIVEE-S-GGLHHVLVIITSGQVAT 186 (358)
Q Consensus 147 v~l~gpt~fapvI~~a~~~~~~-~-~~~Y~VLlIiTDG~i~d 186 (358)
+...|-|+...-|+.|+++.++ . ...=-++++||||+-+.
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSE
T ss_pred cccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCc
Confidence 3447889999999999998764 2 13345788999998775
No 105
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.11 E-value=4.5 Score=30.78 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=24.1
Q ss_pred cccCCCccCcccCCCCeee-----cCCCCCchhhhhc
Q 018272 308 VAEAQRCCICCEDEKDTAF-----ECGHMSCIKCALR 339 (358)
Q Consensus 308 ~~~~~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~ 339 (358)
-.+...|.+|...+.-..- .||+.||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456789999987654322 8999999999875
No 106
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=64.97 E-value=2.7 Score=38.45 Aligned_cols=42 Identities=24% Similarity=0.600 Sum_probs=33.6
Q ss_pred CCCccCcccCCCCeee--cCCCCCchhhhhcC------CCCCCCccccCC
Q 018272 311 AQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPFCREEITT 352 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~------~~CP~CR~~i~~ 352 (358)
...|.+|.+-...... .|+|.+=..|..++ ..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 6799999998877666 48988878888764 379999998665
No 107
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.00 E-value=6.2 Score=30.83 Aligned_cols=43 Identities=30% Similarity=0.733 Sum_probs=31.0
Q ss_pred cCCCccCcccCC---CC-eee----cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018272 310 EAQRCCICCEDE---KD-TAF----ECGHMSCIKCALRM-----PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~~---~~-~v~----pCgH~~C~~C~~~~-----~~CP~CR~~i~~ 352 (358)
....|.||-+.. .+ -+| .|+--+|+.|..-. +.||.|+....+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 346999999862 11 234 56666999998843 679999988763
No 108
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=63.86 E-value=0.45 Score=34.42 Aligned_cols=38 Identities=37% Similarity=0.933 Sum_probs=25.3
Q ss_pred ccCCCccCcccCC-CCeeecCCCC-------CchhhhhcC--------CCCCCCccc
Q 018272 309 AEAQRCCICCEDE-KDTAFECGHM-------SCIKCALRM--------PQCPFCREE 349 (358)
Q Consensus 309 ~~~~~C~IC~~~~-~~~v~pCgH~-------~C~~C~~~~--------~~CP~CR~~ 349 (358)
.+..+|.||.... .| .|||. +|..|.-++ +.|-+||+.
T Consensus 7 ~d~~~C~iC~KTKFAD---G~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD---GCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCS---SCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceecc---CCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 5678999999422 22 56665 688887654 457777753
No 109
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=59.65 E-value=4.1 Score=39.76 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=33.6
Q ss_pred ccCCCccCcccCCCCeee--cCCCCCchhhhh--------cCCCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF--ECGHMSCIKCAL--------RMPQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~--------~~~~CP~CR~~i~~ 352 (358)
.-...|++-+.....++- .|.|.-|..-.. .-+.||+|.+.+..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 345899999998888886 999996665432 34899999987743
No 110
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=57.80 E-value=2.8 Score=39.88 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=31.5
Q ss_pred cCCCccCcccCCCCeee-c----CCCC--CchhhhhcC----CCCCCCccc
Q 018272 310 EAQRCCICCEDEKDTAF-E----CGHM--SCIKCALRM----PQCPFCREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~-p----CgH~--~C~~C~~~~----~~CP~CR~~ 349 (358)
....|+||-..+.-.++ . =|+. .|..|...| ..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 46799999998877665 2 3433 899999987 579999886
No 111
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.03 E-value=4.9 Score=39.08 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=34.0
Q ss_pred ccCCCccCcccCCCCeee--cCCCCCchhhhh--------cCCCCCCCccccCC
Q 018272 309 AEAQRCCICCEDEKDTAF--ECGHMSCIKCAL--------RMPQCPFCREEITT 352 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~--------~~~~CP~CR~~i~~ 352 (358)
.-...|++-+.....++- .|.|.-|..-.. .-+.||+|.+.+..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 445799999998888886 999996665433 33899999998753
No 112
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.49 E-value=13 Score=33.34 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=21.5
Q ss_pred CCccCcccCCCCee-----ecCCCCCchhhhhc
Q 018272 312 QRCCICCEDEKDTA-----FECGHMSCIKCALR 339 (358)
Q Consensus 312 ~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~ 339 (358)
..|.+|...+.-.. ..||+.||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 58999987665332 28999999999874
No 113
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.36 E-value=4.5 Score=39.38 Aligned_cols=42 Identities=26% Similarity=0.537 Sum_probs=0.0
Q ss_pred ccCCCccCcccCCCCee-----ecCCCCCchhhhhcC-----------CCCCCCcccc
Q 018272 309 AEAQRCCICCEDEKDTA-----FECGHMSCIKCALRM-----------PQCPFCREEI 350 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~~-----------~~CP~CR~~i 350 (358)
.+...|..|.....-.. ..||+.+|..|.... ..|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 44568999998664322 289999999998642 3466665544
No 114
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.73 E-value=8 Score=29.81 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=23.4
Q ss_pred ccCCCccCcccCCCCee-----ecCCCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTA-----FECGHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~ 339 (358)
.+...|.+|...+.-.. -.||+.+|..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45678999997665322 18999999999885
No 115
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.40 E-value=11 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=23.4
Q ss_pred ccCCCccCcccCCCCeee-----cCCCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTAF-----ECGHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~ 339 (358)
.+...|.+|...+.-..- .||+.||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445789999987754322 7999999999874
No 116
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.65 E-value=11 Score=27.08 Aligned_cols=35 Identities=29% Similarity=0.807 Sum_probs=27.4
Q ss_pred CCccCcccCCCCee-e---cCCCCCchhhhhcC----CCCCCC
Q 018272 312 QRCCICCEDEKDTA-F---ECGHMSCIKCALRM----PQCPFC 346 (358)
Q Consensus 312 ~~C~IC~~~~~~~v-~---pCgH~~C~~C~~~~----~~CP~C 346 (358)
..|-.|.....+.. + .|++.||..|-.-+ ..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999988776543 4 79999999998754 789998
No 117
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.02 E-value=3.8 Score=35.06 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=28.9
Q ss_pred cCCCccCcccCCC---C-eee--cCCCCCchhhhhc-----CCCCCCCccc
Q 018272 310 EAQRCCICCEDEK---D-TAF--ECGHMSCIKCALR-----MPQCPFCREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~~---~-~v~--pCgH~~C~~C~~~-----~~~CP~CR~~ 349 (358)
+...|.+|..... + ... .|.|.+|..|... .+.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 4679999998631 1 223 8999999999953 3678888764
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.42 E-value=10 Score=31.03 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=23.9
Q ss_pred ccCCCccCcccCCCCee-----ecCCCCCchhhhhcC
Q 018272 309 AEAQRCCICCEDEKDTA-----FECGHMSCIKCALRM 340 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~~ 340 (358)
.+...|.+|...+.-.. -.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 44568999998765332 189999999998753
No 119
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.04 E-value=6.1 Score=29.12 Aligned_cols=34 Identities=29% Similarity=0.691 Sum_probs=24.1
Q ss_pred ccccCCCccCcccCCCCeeecC-CCCCchhhhhcC
Q 018272 307 EVAEAQRCCICCEDEKDTAFEC-GHMSCIKCALRM 340 (358)
Q Consensus 307 ~~~~~~~C~IC~~~~~~~v~pC-gH~~C~~C~~~~ 340 (358)
...+..-|.||.+..+--.+.| |-++|..|...+
T Consensus 4 ~~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCCCEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCCeEEecCCCCceehHHHHHHH
Confidence 3456789999997633222288 777999998865
No 120
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.57 E-value=28 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=21.9
Q ss_pred CCCccCcccCCCCee-----ecCCCCCchhhhhc
Q 018272 311 AQRCCICCEDEKDTA-----FECGHMSCIKCALR 339 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~ 339 (358)
...|.+|...+.-.. -.||+.+|..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 369999987665322 27999999999875
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.24 E-value=9.3 Score=29.38 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=23.2
Q ss_pred ccCCCccCcccCCCCee-----ecCCCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTA-----FECGHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v-----~pCgH~~C~~C~~~ 339 (358)
.+...|.+|...+.-.. ..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34568999998765432 28999999999874
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.05 E-value=3.6 Score=34.43 Aligned_cols=40 Identities=28% Similarity=0.736 Sum_probs=29.2
Q ss_pred cCCCccCcccCCC---C-eee--cCCCCCchhhhhcC--------CCCCCCccc
Q 018272 310 EAQRCCICCEDEK---D-TAF--ECGHMSCIKCALRM--------PQCPFCREE 349 (358)
Q Consensus 310 ~~~~C~IC~~~~~---~-~v~--pCgH~~C~~C~~~~--------~~CP~CR~~ 349 (358)
+...|.+|..... + ... .|.|.+|..|.... +.|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4578999998762 1 223 89999999998844 558888764
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.79 E-value=12 Score=28.17 Aligned_cols=31 Identities=29% Similarity=0.651 Sum_probs=23.5
Q ss_pred ccCCCccCcccCCCCeee-----cCCCCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTAF-----ECGHMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~ 339 (358)
.+...|.+|...+.-..- .||+.||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445689999987654322 8999999999875
No 124
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=34.40 E-value=1.5e+02 Score=26.26 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=63.1
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCccccCCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (358)
.+.+.+-+|+|.|=+ + ++ +.-++.+..|..-++.+..+ +|-+-+|-++. ..++++|+.
T Consensus 3 pvDl~fl~D~S~SM~--------~----di------~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~- 61 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQ--------G----HL------SNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA- 61 (212)
T ss_dssp CEEEEEEEECCGGGT--------T----TH------HHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES-
T ss_pred ceEEEEEEeCCCcch--------h----HH------HHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC-
Confidence 478899999998843 1 23 55667777788788888788 87655566651 123344431
Q ss_pred CCCCCCHHHHHHHHHhcCCceeecc----CCC-hHHHHHHHHHHHH--hcCCceEEEEEEeCCccCC
Q 018272 127 DSPCQGFEHVLECYRKNVPNVQYFG----PTS-YAPMVEAAVDIVE--ESGGLHHVLVIITSGQVAT 186 (358)
Q Consensus 127 ~~~~~g~~gvl~~Y~~~l~~v~l~g----pt~-fapvI~~a~~~~~--~~~~~Y~VLlIiTDG~i~d 186 (358)
..+.. ++.+.+...+| |-. |.-+++.+....+ =.+ .-.+||++||+..+.
T Consensus 62 -----d~~~F----~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 62 -----DSSQF----QRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp -----CHHHH----HHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred -----CHHHH----HHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 33333 33334455555 333 3334443322111 112 568999999998775
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.85 E-value=16 Score=26.89 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=21.3
Q ss_pred CCccCcccCCCCeee-----cCCCCCchhhhhc
Q 018272 312 QRCCICCEDEKDTAF-----ECGHMSCIKCALR 339 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~ 339 (358)
..|.+|...+.-..- .||+.+|..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 489999987654322 7999999999864
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.90 E-value=16 Score=29.95 Aligned_cols=37 Identities=24% Similarity=0.668 Sum_probs=25.4
Q ss_pred CCCccCcccCCCCeee-----cCCCCCchhhhhcC----CCCCCCc
Q 018272 311 AQRCCICCEDEKDTAF-----ECGHMSCIKCALRM----PQCPFCR 347 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~-----pCgH~~C~~C~~~~----~~CP~CR 347 (358)
...|..|...+.-..- .||..||..|.... ..|-.|-
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 4689999987754322 89999999998753 3455553
No 127
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.35 E-value=11 Score=29.80 Aligned_cols=38 Identities=24% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCccCcccCCCCeeecCCCCCchhhhhcC---CCCCCCccccCC
Q 018272 312 QRCCICCEDEKDTAFECGHMSCIKCALRM---PQCPFCREEITT 352 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~pCgH~~C~~C~~~~---~~CP~CR~~i~~ 352 (358)
..||+|.....+ .=|+..|..|.... ..||-|.++++.
T Consensus 33 ~~CP~Cq~eL~~---~g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ---DNGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE---ETTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCccee---cCCEEECccccchhhccccCcchhhHHHH
Confidence 689999843222 22333466666654 347777766543
No 128
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.64 E-value=38 Score=26.17 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=21.9
Q ss_pred ccCCCccCcccCCCCeeecCC---CCCchhhhhc
Q 018272 309 AEAQRCCICCEDEKDTAFECG---HMSCIKCALR 339 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v~pCg---H~~C~~C~~~ 339 (358)
..+..|.||-.......+||. -.|=..|+.+
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCcccCccccccccceeccccccccccHhhccc
Confidence 356799999988877788665 3344567765
No 129
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=29.22 E-value=1e+02 Score=32.33 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHhcCCceeeccCCC-----hHHHHHHHHH--HHHhcCCceEEEEEEeCCccC
Q 018272 137 LECYRKNVPNVQYFGPTS-----YAPMVEAAVD--IVEESGGLHHVLVIITSGQVA 185 (358)
Q Consensus 137 l~~Y~~~l~~v~l~gpt~-----fapvI~~a~~--~~~~~~~~Y~VLlIiTDG~i~ 185 (358)
+..+++.+.++..+|--. |.-|++.|.- ...=.....++||++||..-+
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccc
Confidence 456666666676766432 4444443321 111112458999999998766
No 130
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.12 E-value=72 Score=22.96 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=27.2
Q ss_pred cCCCccCcccCCCCeee--cCCCCCchhhhhcC--------CCCCCCcccc
Q 018272 310 EAQRCCICCEDEKDTAF--ECGHMSCIKCALRM--------PQCPFCREEI 350 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~--------~~CP~CR~~i 350 (358)
....|.||.+. .++++ .|...|=..|.... +.||.|+..-
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999864 34555 77766777777522 6899998643
No 131
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=28.76 E-value=56 Score=25.08 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=7.2
Q ss_pred CCCccCcccC
Q 018272 311 AQRCCICCED 320 (358)
Q Consensus 311 ~~~C~IC~~~ 320 (358)
...|.||-+.
T Consensus 17 ~h~c~vCgd~ 26 (87)
T 2lze_A 17 KHICAICGNN 26 (87)
T ss_dssp SSSCSSSSSS
T ss_pred CEEccCCCCc
Confidence 4579999763
No 132
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=27.71 E-value=88 Score=28.51 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=54.4
Q ss_pred eeeceEEEeccCCCCCCCCCCCCCCCcccccCCCCCChHHHHHHHHhhcccccCCC-ceeEEeecCCCCCCCCcc-ccCC
Q 018272 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVF-SFQE 125 (358)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~sLH~~~~~~~~N~Yq~aI~~ig~vl~~yD~d-~ip~~GFGa~~~~~~~~f-~~~~ 125 (358)
.+.+++-||-|+|=. + +......++..+..-+..+-.. .|-++.|+.+...-..+. +|+.
T Consensus 134 ~~~vvfLVDtSgSM~--------~----------kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~ 195 (242)
T 3rag_A 134 ALHLVVCLDTSASMR--------D----------KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSS 195 (242)
T ss_dssp CEEEEEEEECSGGGT--------T----------THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEES
T ss_pred CCCEEEEEECcccHH--------H----------HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCC
Confidence 478888899887731 1 1233344555544444444445 999999998743222222 3332
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeeccCCChHHHHHHHHHHHHh
Q 018272 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE 168 (358)
Q Consensus 126 ~~~~~~g~~gvl~~Y~~~l~~v~l~gpt~fapvI~~a~~~~~~ 168 (358)
. . -+. +.++.+...|-|...+-|+.|.++.++
T Consensus 196 ~---~-~~~-------~~l~~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 196 E---V-NVA-------ALEAELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp S---C-CHH-------HHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred h---H-HHH-------HHHhhCCCCCCCcHHHHHHHHHHHHHH
Confidence 1 1 222 223344568999999999999888754
No 133
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.50 E-value=32 Score=25.97 Aligned_cols=40 Identities=30% Similarity=0.678 Sum_probs=30.5
Q ss_pred CCccCcccCCCCeee--cCCCCCchhhhhcC--CCCCCCccccC
Q 018272 312 QRCCICCEDEKDTAF--ECGHMSCIKCALRM--PQCPFCREEIT 351 (358)
Q Consensus 312 ~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~--~~CP~CR~~i~ 351 (358)
..|..|........+ .=|..+|..|..+. ..|..|.++|.
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 667777766655433 45666899999887 68999999998
No 134
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.27 E-value=38 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCccccccCCCccCcccCCCCeee--cCCCCCchhhhhcC
Q 018272 303 PVSAEVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM 340 (358)
Q Consensus 303 ~~~~~~~~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~ 340 (358)
++.+.+.....|+.|-... .++ .-|-.+|..|..-+
T Consensus 3 ~~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 3 TSRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp TCSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred cchhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 3445566677899997544 455 55666899997644
No 135
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.04 E-value=55 Score=23.81 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=19.6
Q ss_pred cCCCccCcccCCCCeee--cCCCCCchhh
Q 018272 310 EAQRCCICCEDEKDTAF--ECGHMSCIKC 336 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~--pCgH~~C~~C 336 (358)
....|..|.....-+.| -||..||..-
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSSS
T ss_pred cCCcChhhCCcccccCeEeecCCEecccC
Confidence 45789999987554556 7888898754
No 136
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=21.74 E-value=1.1e+02 Score=27.33 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=33.4
Q ss_pred eEEEEEEe--CCccCCcchhHHHHHHHHHHhcC--CCeEEEEEeeCCCCch----hhhhccC
Q 018272 173 HHVLVIIT--SGQVATGSQQEQETIRSIVDASS--YPLSIVLVGVGDGPWE----SIQKFHD 226 (358)
Q Consensus 173 Y~VLlIiT--DG~i~d~~~~~~~t~~aIv~AS~--lPlSIiiVGVG~~~f~----~m~~LD~ 226 (358)
..|++.=| +|++.| +++...+.|..... --+..-++|.||..|. .++.||.
T Consensus 89 ~vI~~tsTyG~Ge~Pd---na~~F~~~L~~~~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~ 147 (219)
T 3hr4_A 89 LLLVVTSTFGNGDCPG---NGEKLKKSLFMLKELNNKFRYAVFGLGSSMYPRFCAFAHDIDQ 147 (219)
T ss_dssp EEEEEEECBTTTBCCG---GGHHHHHHHHHCCCCSSCCEEEEEEEECTTSSSTTHHHHHHHH
T ss_pred eEEEEEeccCCCcCCH---HHHHHHHHHHhcchhhcCCEEEEEeCCCcchHHHhHHHHHHHH
Confidence 34444334 677777 47788888876531 2466888899999983 4566664
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.47 E-value=35 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=15.3
Q ss_pred cCCCCCchhhhhcCCCCCCCccccCC
Q 018272 327 ECGHMSCIKCALRMPQCPFCREEITT 352 (358)
Q Consensus 327 pCgH~~C~~C~~~~~~CP~CR~~i~~ 352 (358)
.||+.|+ .=..+-..||.|+..--.
T Consensus 72 ~CG~~F~-~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-ccCCCCCCCcCCCCCccC
Confidence 6888882 111122679999976443
No 138
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.33 E-value=37 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=17.1
Q ss_pred CCCCCchhhhhcCCCCCCCccc
Q 018272 328 CGHMSCIKCALRMPQCPFCREE 349 (358)
Q Consensus 328 CgH~~C~~C~~~~~~CP~CR~~ 349 (358)
|||.||..|...+.. -.|...
T Consensus 56 C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 56 CGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CSCCEETTTTEECCS-SCSSSC
T ss_pred CCCeeccccCccccC-Cccccc
Confidence 899999999998866 666553
No 139
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.30 E-value=44 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=19.4
Q ss_pred ccCCCccCcccCCCCee---e--cCCCCCchh
Q 018272 309 AEAQRCCICCEDEKDTA---F--ECGHMSCIK 335 (358)
Q Consensus 309 ~~~~~C~IC~~~~~~~v---~--pCgH~~C~~ 335 (358)
.....|..|....--+- | -||..||..
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 44578999987665441 5 788889974
No 140
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.14 E-value=40 Score=32.99 Aligned_cols=39 Identities=26% Similarity=0.727 Sum_probs=29.1
Q ss_pred CCCccCcccCCCCeee----cCCCCCchhhhhcC--------------CCCCCCcccc
Q 018272 311 AQRCCICCEDEKDTAF----ECGHMSCIKCALRM--------------PQCPFCREEI 350 (358)
Q Consensus 311 ~~~C~IC~~~~~~~v~----pCgH~~C~~C~~~~--------------~~CP~CR~~i 350 (358)
+..|.+|-+.. +.++ .|...||..|+.++ +.|-+|...-
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 56999999765 3333 56677999999864 7899998653
No 141
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=20.67 E-value=33 Score=25.51 Aligned_cols=29 Identities=31% Similarity=0.690 Sum_probs=24.3
Q ss_pred CCccCcccCCCCee---e---cCCCCCchhhhhcC
Q 018272 312 QRCCICCEDEKDTA---F---ECGHMSCIKCALRM 340 (358)
Q Consensus 312 ~~C~IC~~~~~~~v---~---pCgH~~C~~C~~~~ 340 (358)
..|.+|-....+.. + .|.-+.|-.|+.++
T Consensus 6 ~~C~kCEq~~vn~~DqelHdlnCs~NiCPYC~nRl 40 (77)
T 2l7x_A 6 QTCTICETTPVNAIDAEMHDLNCSYNICPYCASRL 40 (77)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHTTTCCTTTCCCC
T ss_pred ceeeeeccccccHHHHHHHHcCCCcccChhhhccC
Confidence 48999998777743 3 89999999999998
No 142
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.47 E-value=33 Score=27.15 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=31.9
Q ss_pred cCCCccCcccCCCCeee--cCCCCCchhhhhcC--CCCCCCccccCC
Q 018272 310 EAQRCCICCEDEKDTAF--ECGHMSCIKCALRM--PQCPFCREEITT 352 (358)
Q Consensus 310 ~~~~C~IC~~~~~~~v~--pCgH~~C~~C~~~~--~~CP~CR~~i~~ 352 (358)
+-..|..|........+ .=|..+|..|..+. ..|..|.++|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 34677788776655433 55666899998875 789999999984
No 143
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.36 E-value=19 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=29.5
Q ss_pred CccCcccCCCCeee--cCCCC--CchhhhhcCCCCCCCccccCCee
Q 018272 313 RCCICCEDEKDTAF--ECGHM--SCIKCALRMPQCPFCREEITTRR 354 (358)
Q Consensus 313 ~C~IC~~~~~~~v~--pCgH~--~C~~C~~~~~~CP~CR~~i~~~~ 354 (358)
.|.-|-.......| .||.. .|..|...--.|+.|..-|++..
T Consensus 20 ~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSkkr 65 (81)
T 2jrp_A 20 HCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISKKR 65 (81)
T ss_dssp ECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCCCCTTS
T ss_pred ECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCEeecce
Confidence 47777766555556 57777 47777766667899988888753
Done!