BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018273
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 281 bits (719), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 155/322 (48%), Positives = 206/322 (63%), Gaps = 29/322 (9%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNKE+R + + K Q ++++KL A+ +K LG++ P + P+TI+N R
Sbjct: 55 SEIKNKERRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIPNSH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
HRYIF +++ G +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327
Query: 338 GGEFEWVHKP-EMDTSRRRFFL 358
GE+EWVHKP EMDTSRR+F L
Sbjct: 328 YGEYEWVHKPREMDTSRRKFHL 349
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 280 bits (717), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 206/322 (63%), Gaps = 29/322 (9%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + + K Q ++++KL A+ +K LG++ P + P+TI+N R
Sbjct: 55 SEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIPNSH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
HRYIF +++ G +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327
Query: 338 GGEFEWVHKP-EMDTSRRRFFL 358
GE+EWVHKP EMDTSRR+F L
Sbjct: 328 YGEYEWVHKPREMDTSRRKFHL 349
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 279 bits (714), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 207/322 (64%), Gaps = 29/322 (9%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + + K Q ++++KL A+ +K LG++ P + P+TI+N R
Sbjct: 55 SEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
HRYIF++++ G +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327
Query: 338 GGEFEWVHKP-EMDTSRRRFFL 358
GE+EWVHKP EMDTSRR+F L
Sbjct: 328 YGEYEWVHKPREMDTSRRKFHL 349
>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
Length = 343
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 200/322 (62%), Gaps = 29/322 (9%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + KLK +K+ EK K R E+ AL G++ P + P+TIEN R
Sbjct: 49 SEIKNKQRRQFMFIKLKQEKRKEKLILRKKR-KKEREAL--GDKAPPKPVPKTIENQRVY 105
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P D+E+ DEF+ + PKILITT R F +L S+IPNS
Sbjct: 106 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 165
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAHFK+S + LRK+
Sbjct: 166 VYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKE 225
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
+K G PT H PE++LNNF TRLGH +GR+ SL+P P F GR+V TFHNQRD+IFFR
Sbjct: 226 MKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFR 285
Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
+HRY+F++++ G +QE GPRFTLKL SLQ GTFD+K
Sbjct: 286 YHRYLFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 321
Query: 338 GGEFEWVHK-PEMDTSRRRFFL 358
GE+EWVHK EMDTSRR+F L
Sbjct: 322 YGEYEWVHKRHEMDTSRRKFHL 343
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/309 (46%), Positives = 194/309 (62%), Gaps = 28/309 (9%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + + K Q++ EK K E+ AL G++ P + P+TI+N R
Sbjct: 55 SEIKNKQRRHLMFTRWKQQQRKEKLAAKKKL-KREREAL--GDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
HRYIF++++ G +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327
Query: 338 GGEFEWVHK 346
GE+EWVHK
Sbjct: 328 YGEYEWVHK 336
>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1
Length = 330
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 200/322 (62%), Gaps = 29/322 (9%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R H K+ +++K+++ + +K L ++ P + P+TIEN R
Sbjct: 36 SEIKNKQRR---HTMFLKLKEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIY 92
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEFS+ + PK+LITT R F +L +VIP+++
Sbjct: 93 DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 152
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAHFK+S + LRK+
Sbjct: 153 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 212
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
+K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V TFHNQRDFIFFR
Sbjct: 213 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 272
Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
HRYIF+ ++ G +QE GPRFTLKL SLQ GTFD+K
Sbjct: 273 FHRYIFKNEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 308
Query: 338 GGEFEWVHK-PEMDTSRRRFFL 358
GE+EWVHK EMD+SRR+F L
Sbjct: 309 FGEYEWVHKRHEMDSSRRKFHL 330
>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans
GN=F44G4.1 PE=4 SV=4
Length = 384
Score = 251 bits (641), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 144/335 (42%), Positives = 192/335 (57%), Gaps = 33/335 (9%)
Query: 34 KEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRAL---------ELGEEPP 84
+E+L +K + KH K ++ K LK +KRA ELGE P
Sbjct: 73 QELLEKYEASKATATKTKDDFKHLPKSQRGKALKRALRKDKRARQGERAQIRDELGESAP 132
Query: 85 ARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGP 144
+ P+TIE+ RE D T+ +DDE+ DEF+ + +PK++IT
Sbjct: 133 QKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTF 192
Query: 145 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 204
F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GP
Sbjct: 193 KFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGP 252
Query: 205 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 264
TA+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRV
Sbjct: 253 TAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRV 312
Query: 265 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 324
VTFHNQRD+IFFRHHRY F+ + SK + L E GPRFTL
Sbjct: 313 VTFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTL 349
Query: 325 KLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 358
+L LQ GTFD K GEFEWV K EM+TSRRRFFL
Sbjct: 350 RLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 197/327 (60%), Gaps = 40/327 (12%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S ++NKE+R A++ K+K +K +K ++ +AR A A P TIE+ RE
Sbjct: 101 SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPA------NPGH----TIESLREK 150
Query: 99 DET----VCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVI 154
D+T + D++EL D+FSS ++ PK+LIT + F EL +
Sbjct: 151 DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIF 210
Query: 155 PNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS +
Sbjct: 211 PNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVK 270
Query: 215 LRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF 273
L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR VTFHNQRD+
Sbjct: 271 LTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDY 330
Query: 274 IFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGT 333
IFFRHHRY F TKE GK+ K L+E GPRFTLKL SLQ GT
Sbjct: 331 IFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLKLRSLQEGT 367
Query: 334 FDTKGGEFEWV--HKPEMDTSRRRFFL 358
FD+K G++ W+ +K SRRRFFL
Sbjct: 368 FDSKTGDYAWIISNKRHAMESRRRFFL 394
>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1
Length = 295
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 182/324 (56%), Gaps = 43/324 (13%)
Query: 41 IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDE 100
I NK KR + A +KH+K E+ + R E+ EL E+ +TIENTR DE
Sbjct: 9 ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68
Query: 101 TVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
T+ + D+D+L + ++++E PKI +TT F + L+ ++P
Sbjct: 69 TINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAYEFANILIEILP 119
Query: 156 NSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
N + KR Y LK+I + K++FT I++++ ++++ L I LP+GPT +FKLS V
Sbjct: 120 NVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV 179
Query: 215 LRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFI 274
K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V+T HNQRD+I
Sbjct: 180 EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYI 239
Query: 275 FFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 334
FFR HRY+F+ E G LQE GP+FTLKL LQ G
Sbjct: 240 FFRRHRYVFKDNERVG------------------------LQELGPQFTLKLKRLQRGIK 275
Query: 335 DTKGGEFEWVHKPEMDTSRRRFFL 358
+ E EW HKPEMD +++F+L
Sbjct: 276 E----ETEWEHKPEMDKEKKKFYL 295
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 188/326 (57%), Gaps = 31/326 (9%)
Query: 41 IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRA-----LELGEEPPARMTPRTIENT 95
IKNK R + K HQK +K ++ K R E++ L L E PA TIE+
Sbjct: 4 IKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPA-----TIESK 58
Query: 96 REPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSNRGPAFISELLSV 153
R DET+ D+EL A DEFS+ ++ PK+L+TT + S + F SELL
Sbjct: 59 RVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDC 118
Query: 154 IPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSK 212
PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS
Sbjct: 119 FPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSN 178
Query: 213 LVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRD 272
L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+VVT H QRD
Sbjct: 179 LQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRD 238
Query: 273 FIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHG 332
F+FFR HRY F K S D G T LQE GPRFT++L +Q G
Sbjct: 239 FLFFRRHRYAFREK-SNMPDGIG-----------------TGLQELGPRFTMRLRMVQKG 280
Query: 333 TFDTKGGEFEWVHKPEMDTSRRRFFL 358
+D K GE + ++ RR+F+L
Sbjct: 281 VWDRKEGEVFFESNAGEESDRRKFWL 306
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 125/231 (54%), Gaps = 26/231 (11%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PKI+ITT R S+R F E+ + PN+ RG YD+K++++ +K +D T +I+
Sbjct: 78 PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTET 137
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R PD +L+ LP GPTA F ++ +V+R DI N G + P L+ +N ++LGHR +
Sbjct: 138 RGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTI 197
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
++ LFP P+ +R++TF N D+I FRHH Y K D + E
Sbjct: 198 LKHLFP-VPKPDSKRIITFSNSEDYISFRHHVY--------------KTENDGEVE---- 238
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRRFFL 358
L E GPRF LK ++ GT +T E EWV + +T+R+R FL
Sbjct: 239 ------LTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 113/219 (51%), Gaps = 24/219 (10%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK+L+TT R S+R F E+ +IPNS+ RG + ++E A+ D T I+++H +
Sbjct: 84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEH 143
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R PD L+I LP GPT F L +VLR DI N G + P L+ N ++LG RV
Sbjct: 144 RGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTA 203
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
+ +LFP P+ RVVTF N D+I FRHH Y KT
Sbjct: 204 LSALFPPDPKDTTPRVVTFANTDDYISFRHHIY----------------------AKTGP 241
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 347
+++I L E GPRF +KL + GT D + EW KP
Sbjct: 242 KQII--LSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus
GN=IMP4 PE=2 SV=1
Length = 291
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 26/231 (11%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+++ F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
++ LFP P+ RRV+TF NQ D+I FRHH Y +KT+
Sbjct: 203 LRYLFP-VPKDDSRRVITFANQDDYISFRHHVY----------------------KKTNH 239
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 358
+ V L E GPRF LKL ++ GT + + + EW P +T+ +R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus
norvegicus GN=Imp4 PE=2 SV=1
Length = 291
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 358
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus
GN=Imp4 PE=2 SV=1
Length = 291
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 358
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii
GN=IMP4 PE=2 SV=2
Length = 291
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 358
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens
GN=IMP4 PE=1 SV=1
Length = 291
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 308
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 309 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 358
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 136/286 (47%), Gaps = 36/286 (12%)
Query: 74 KRALELGEEPPARMTPRT-IENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKIL 132
K+AL G+ P + T ++ + DE+ DDE S L PK++
Sbjct: 33 KQALAQGKPLPKEVADDTKLQRDYQYDESAQESIDDEY----------SALSGIVDPKVI 82
Query: 133 ITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREP 192
+TT R S R F E+ + P S RG Y +K +++ +K T ++V+H +R P
Sbjct: 83 VTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVP 142
Query: 193 DALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSL 252
AL I P GPTA F L +VLR DI N GN + P L+ +NF T LG RV ++++ +
Sbjct: 143 TALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHM 202
Query: 253 FPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVI 312
FP + RV+TF N+ DFI R H Y+ K +D
Sbjct: 203 FPPGVKKDSPRVITFANRGDFISVRQHVYV--------------KTRDG----------- 237
Query: 313 TRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 358
L E GPRF +KL L GT + K + EW + + T+ R+ +L
Sbjct: 238 VELAEVGPRFEMKLYELTLGTLENKDADVEWQLRRFVRTANRKDYL 283
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 130/253 (51%), Gaps = 29/253 (11%)
Query: 107 DDELFAGNDADEFSSILKQGCA-PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTY 165
D+E AG D DE+S+ G ++++TT R S+R F E+ + PN+ RG Y
Sbjct: 64 DNEDEAGVD-DEYSA--SSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNY 120
Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNP 225
+ ++ KK T +IV+H +R P +L + P GPTA F L +VLR DI N GN
Sbjct: 121 VMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQ 180
Query: 226 TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFET 285
+ P L+ +NF T LG+RV ++++LFP P+ RV+TF N+ DFI R H Y+
Sbjct: 181 SEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYV--- 237
Query: 286 KESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH 345
+ KD + E GPRF ++L L+ GT + K + EW
Sbjct: 238 -----------RTKDG-----------VEMAEVGPRFEMRLFELRLGTLENKDADVEWQL 275
Query: 346 KPEMDTSRRRFFL 358
+ + T+ R+ +L
Sbjct: 276 RRFVRTANRKDYL 288
>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1
SV=1
Length = 290
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 156/319 (48%), Gaps = 39/319 (12%)
Query: 44 KEKRSAVHAKLK--HQKKVEKRKKLKARDAAEKRAL--ELGEEPPARMTPRTIENTREPD 99
+E+R ++ K + ++++++++ + A+ + L EL E+ + R ++ +E +
Sbjct: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESE 66
Query: 100 ETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHY 159
E DDE A S I+ P+I++TT R S R F E+ + PN+
Sbjct: 67 EADDLQVDDEYAAT------SGIMD----PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVR 116
Query: 160 YKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI 219
RG Y + +++ KK T ++V+H +R P +L I P GPTA F L +V+R DI
Sbjct: 117 LNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI 176
Query: 220 KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
N GN + P L+ +NF T LG RV +++ LF P+ RV+TF N+ DFI R H
Sbjct: 177 INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
Query: 280 RYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGG 339
Y+ T+E + E GPRF ++L L+ GT + K
Sbjct: 237 VYV-RTREG------------------------VEIAEVGPRFEMRLFELRLGTLENKDA 271
Query: 340 EFEWVHKPEMDTSRRRFFL 358
+ EW + + T+ ++ +L
Sbjct: 272 DVEWQLRRFIRTANKKDYL 290
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 44/320 (13%)
Query: 42 KNKEKRSAVHAK---LKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
+ +E+R ++ K L+ K++KR++LKA A+ K P+ + + E
Sbjct: 5 QARERREYLYRKSLQLQEATKIQKRQQLKAALASGKP------------LPKDVADDEEL 52
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
+T+ DE DE+S+ + PK+++TT R S R F E+ + P S
Sbjct: 53 RKTIAY---DESVQDEIDDEYSA-MSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSI 108
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
RG L ++ K + +IV+H +R P A+ + P GPTA+F L +VLR D
Sbjct: 109 RLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHD 168
Query: 219 IKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRH 278
+ + GN + P L+ +NF T LG RV ++++ LFP + RV+TF N+ DFI R
Sbjct: 169 LPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQ 228
Query: 279 HRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG 338
H Y+ +T+E L E GPRF ++L L+ GT + K
Sbjct: 229 HVYV-KTREG------------------------VELAEVGPRFEMRLYDLRLGTLENKD 263
Query: 339 GEFEWVHKPEMDTSRRRFFL 358
+ EW M T+ ++ +L
Sbjct: 264 ADVEWRMHGFMRTANKKDYL 283
>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=IMP4 PE=3 SV=2
Length = 284
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 147/319 (46%), Gaps = 46/319 (14%)
Query: 44 KEKRSAVHAK---LKHQKKVEKRKKLKARDAAEK-RALELGEEPPARMTPRTIENTREPD 99
+E+R ++ K L+ EKR++LKA A+ K + EL E+ + ++ D
Sbjct: 7 RERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAED-------KELQKDFIYD 59
Query: 100 ETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHY 159
E+ DDE A + E PK+LITT R S + F E+ + PNS
Sbjct: 60 ESEQTEIDDEYSALSGISE----------PKVLITTSRNPSVKLLQFSKEIKLMFPNSIK 109
Query: 160 YKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI 219
RG Y + ++ ++ + +I++H +R P +L I P GP+ F L + LR D+
Sbjct: 110 LNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDL 169
Query: 220 KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
GN + P LV NF + LG RV ++++ LFP + RV+TF N DFI RHH
Sbjct: 170 PEIGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHH 229
Query: 280 RYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGG 339
Y+ K KD L E GPRF ++L L+ G D K
Sbjct: 230 MYV--------------KTKDT-----------VELSEVGPRFEMRLYELRLGLLDNKDS 264
Query: 340 EFEWVHKPEMDTSRRRFFL 358
E EW + + T R+ +L
Sbjct: 265 EVEWQLRRFIRTGNRKNYL 283
>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3
SV=1
Length = 426
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 68/218 (31%)
Query: 200 LPDGPTAHFKLSKLVLRKDI-KNHGNPTG------HIPELVLNNFATRLGH--RVGRLIQ 250
LP GPT FK+ + ++D+ K PT + P +VLN F H V ++Q
Sbjct: 119 LPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFTRGTPHLEMVQNMVQ 178
Query: 251 SLFPQSPEF-----RGRRVVTFHNQR--DFIFFRHH-------------RYIFETK---- 286
SLFP + +RVV F+ + D + FRH+ + I ++K
Sbjct: 179 SLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVNRSIKRIIQSKIPDI 238
Query: 287 -----------------ESKGSDAN-----------GKKAKDAKSEK------TSQQKVI 312
ES DAN KAK+ K E+ T+Q++ I
Sbjct: 239 SNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKLERKGLDINTTQKRAI 298
Query: 313 TRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMD 350
+L+E GPR L L+ ++ + + +++ K +++
Sbjct: 299 -KLEEIGPRMNLSLLKVEDDLYKGEVLYHQYIKKSDIE 335
>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2
Length = 470
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 79/209 (37%), Gaps = 55/209 (26%)
Query: 195 LLIIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RV 245
L ++ LP GPT F++SK L +D+ + H H P LVLN+F + H +
Sbjct: 97 LKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGPQGMHIKLM 156
Query: 246 GRLIQSLFPQS-------PEFRGRRVVTFHNQRDFIFFRHHRY-IFETKESKGSD----- 292
+ Q+LFP + ++ ++ + FRH+ + S+G
Sbjct: 157 ATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASRGMKKLLQE 216
Query: 293 ---------------ANGKKAKDAKSEKTSQ------------------QKVITRLQECG 319
A G D++ E + Q+ RL E G
Sbjct: 217 KFPNMSRLQDISELLATGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQSAVRLTEIG 276
Query: 320 PRFTLKLVSLQHGTFDTKGGEFEWVHKPE 348
PR TL+L+ +Q G + +VHK E
Sbjct: 277 PRMTLQLIKIQEGVGNGNVLFHSFVHKTE 305
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 130 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYD----LKKIIEYAKKKDFTSIIVV 185
K+L+ + R + R +++L+S++P H K D L ++ E A+ + +I
Sbjct: 44 KVLVLSSRGVTYRQRHLLNDLVSMMP--HSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101
Query: 186 HTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPT-GHIPELVLNNFATRLGHR 244
+ RRE L I P+GPT F + L ++ GN G P L + H
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL 161
Query: 245 --VGRLIQSLFPQSPEFRGR-----RVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 297
V L+Q F R RV T I+FR+ +E +E N K
Sbjct: 162 KVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRN----YEIRE------NEDK 211
Query: 298 AKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 334
+KD + L E GPRF + ++++ G+F
Sbjct: 212 SKDPVT-----------LIEIGPRFVMTIINILEGSF 237
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 195 LLIIGLPDGPTAHFKLSKLVLRKDI----KNHGNPTGHI---PELVLNNFATRLGHR--- 244
L II P GP+ HF++ + +L KD+ KN +PT P LV+N+F
Sbjct: 96 LRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPH 155
Query: 245 ---VGRLIQSLFP----QSPEFRGRRVVTFHNQRD--FIFFRHHRYIFETK 286
+ Q++FP Q + V N+RD +I RH +I TK
Sbjct: 156 EALLTTTFQNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRH--FIISTK 204
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 306 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 346
T ++K I +L E GPR TLKLV ++ G K E+V K
Sbjct: 320 TPRKKAI-KLTELGPRLTLKLVKIEEGICSGKVLHHEFVQK 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,281,758
Number of Sequences: 539616
Number of extensions: 6068046
Number of successful extensions: 30707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 27746
Number of HSP's gapped (non-prelim): 2355
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)