Query 018273
Match_columns 358
No_of_seqs 238 out of 727
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2780 Ribosome biogenesis pr 100.0 2.3E-91 5E-96 652.4 23.8 299 36-358 4-302 (302)
2 KOG2781 U3 small nucleolar rib 100.0 1.1E-68 2.3E-73 495.0 25.7 279 44-358 7-287 (290)
3 KOG2963 RNA-binding protein re 100.0 5.5E-42 1.2E-46 330.3 17.9 219 127-348 24-318 (405)
4 PF04427 Brix: Brix domain; I 100.0 5.5E-41 1.2E-45 303.6 8.7 179 133-329 1-191 (191)
5 smart00879 Brix Brix domain. T 100.0 1.8E-37 4E-42 276.6 18.8 170 132-324 1-180 (180)
6 COG2136 IMP4 Predicted exosome 100.0 1.1E-36 2.4E-41 278.0 17.0 182 128-334 1-189 (191)
7 KOG2971 RNA-binding protein re 100.0 6.8E-37 1.5E-41 284.7 13.9 199 122-352 45-254 (299)
8 COG5154 BRX1 RNA-binding prote 100.0 8E-32 1.7E-36 245.4 14.7 196 128-348 30-236 (283)
9 PRK03972 ribosomal biogenesis 100.0 7.7E-29 1.7E-33 228.1 19.4 125 131-255 2-132 (208)
10 PRK00933 ribosomal biogenesis 99.3 1.7E-11 3.8E-16 110.1 12.3 114 131-253 1-114 (165)
11 KOG3031 Protein required for b 98.7 9.2E-08 2E-12 91.6 9.2 171 141-331 40-228 (307)
12 COG5106 RPF2 Uncharacterized c 96.7 0.0023 4.9E-08 60.9 4.6 142 172-333 77-237 (316)
13 PRK03972 ribosomal biogenesis 95.8 0.051 1.1E-06 50.9 8.5 76 131-211 107-188 (208)
14 PF05508 Ran-binding: RanGTP-b 72.8 1.9 4.1E-05 42.7 1.5 41 315-355 186-228 (302)
15 PF04921 XAP5: XAP5, circadian 68.6 15 0.00032 35.4 6.4 78 118-212 102-186 (239)
16 cd00860 ThrRS_anticodon ThrRS 64.3 20 0.00044 27.5 5.6 77 130-207 3-80 (91)
17 cd00861 ProRS_anticodon_short 56.8 27 0.00058 27.2 5.1 67 142-209 19-85 (94)
18 cd00858 GlyRS_anticodon GlyRS 48.9 65 0.0014 26.9 6.5 78 128-208 26-107 (121)
19 KOG2894 Uncharacterized conser 45.7 50 0.0011 32.6 5.8 78 118-212 190-274 (331)
20 cd00859 HisRS_anticodon HisRS 44.0 56 0.0012 24.4 5.0 78 129-207 2-80 (91)
21 PF03129 HGTP_anticodon: Antic 42.5 39 0.00083 26.4 3.9 82 131-212 2-86 (94)
22 PF08572 PRP3: pre-mRNA proces 37.0 57 0.0012 31.0 4.7 44 55-100 143-188 (223)
23 cd00738 HGTP_anticodon HGTP an 36.8 1.5E+02 0.0033 22.5 6.5 44 164-207 40-83 (94)
24 PF12745 HGTP_anticodon2: Anti 35.9 1.9E+02 0.004 28.3 8.2 78 127-204 4-89 (273)
25 cd02974 AhpF_NTD_N Alkyl hydro 31.5 1.7E+02 0.0038 23.8 6.2 74 118-204 9-84 (94)
26 KOG4709 Uncharacterized conser 31.4 67 0.0015 30.1 4.0 34 38-71 41-75 (217)
27 COG1783 XtmB Phage terminase l 30.9 1.4E+02 0.003 31.0 6.6 79 129-212 24-112 (414)
28 COG0124 HisS Histidyl-tRNA syn 27.1 1.9E+02 0.0041 30.2 6.9 77 126-203 333-410 (429)
29 cd03409 Chelatase_Class_II Cla 26.7 3.1E+02 0.0067 21.3 6.9 44 142-185 18-65 (101)
30 cd08599 PI-PLCc_plant Catalyti 26.4 77 0.0017 30.3 3.7 85 166-255 31-117 (228)
31 PF10673 DUF2487: Protein of u 24.0 1E+02 0.0022 27.4 3.7 38 153-190 54-96 (142)
32 CHL00201 syh histidine-tRNA sy 23.6 1.5E+02 0.0032 30.5 5.4 84 128-212 325-409 (430)
33 PF09805 Nop25: Nucleolar prot 22.6 1.8E+02 0.004 25.3 5.1 37 35-71 22-59 (137)
34 PF14996 RMP: Retinal Maintena 22.2 62 0.0013 29.0 2.0 17 263-279 77-98 (146)
35 KOG3112 Uncharacterized conser 21.6 80 0.0017 30.1 2.7 42 166-209 101-142 (262)
36 TIGR03143 AhpF_homolog putativ 20.7 1.9E+02 0.0042 30.6 5.8 86 116-205 354-445 (555)
No 1
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=2.3e-91 Score=652.36 Aligned_cols=299 Identities=56% Similarity=0.876 Sum_probs=291.0
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhcccCCCcccCCCcccccCCCC
Q 018273 36 ILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGND 115 (358)
Q Consensus 36 ~~~~~i~nk~~R~~~~~k~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~k~~p~tie~~r~~d~t~~~~~d~e~~~~~~ 115 (358)
....+|+||.+|++.|.+.+++|.+++.+.|+++.+++.+.+|+|+.+|+++||+||||+|+||+|+++++|+|++.|++
T Consensus 4 ~~~~~~~n~~~~~~~~~~~k~~k~~~~~~~rk~k~~~~~~~~el~~~~~~~~vp~TIe~~R~yDeT~v~~~deEl~~d~~ 83 (302)
T KOG2780|consen 4 GNDIKIKNKDKRQKSYMKNKHQKNLEKLKMRKEKAKEKRELPELGELRPQKNVPKTIESTRVYDETIVEEEDEELQADLA 83 (302)
T ss_pred cccccccccccchHHHhhhHHHhhhHHHHHHHHHHHHhhhchhhhhccCccCCcchhhhhhhccccccCCCcHHHhhhhh
Confidence 45678999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceE
Q 018273 116 ADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDAL 195 (358)
Q Consensus 116 ~def~~~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L 195 (358)
+|||++||+.+..|||||||+.+|+.++..||.+|+.|||||.+..|++++++.|+++|..++||++|||+|+++.|++|
T Consensus 84 ~deF~~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L 163 (302)
T KOG2780|consen 84 DDEFSPYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGL 163 (302)
T ss_pred hhhhHHHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCceEEEEEeceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCeEEEEEecCCeEE
Q 018273 196 LIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF 275 (358)
Q Consensus 196 ~I~~lP~GPT~~FkI~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rRVvtF~nq~d~I~ 275 (358)
.|+|||+|||++|+++||.+.+||..+|++++|.|+||+|||+|++|+.|++||++|||++|+|.|||||+||||+||||
T Consensus 164 ~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~If 243 (302)
T KOG2780|consen 164 KIIHLPNGPTAYFKLSNVVLTKDIKKHGRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIF 243 (302)
T ss_pred EEEecCCCCceEEEeecccchhhhhhcCCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCCCCccccc
Q 018273 276 FRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRR 355 (358)
Q Consensus 276 FRhhrY~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~~~~~r~~ 355 (358)
||||||+|..++.+ |+||||||||||+|+++|+|+||.+.|+|+|++++ |+++|++
T Consensus 244 FRhhRY~Fkee~~k-----------------------vglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~ 299 (302)
T KOG2780|consen 244 FRHHRYEFKEEEIK-----------------------VGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK-METSRRK 299 (302)
T ss_pred EEEEEEeecccccc-----------------------cchhhcCCceeeeehhhhhccccccceeeeeeecc-cccchhc
Confidence 99999999865443 69999999999999999999999999999999999 9999999
Q ss_pred cCC
Q 018273 356 FFL 358 (358)
Q Consensus 356 f~l 358 (358)
|||
T Consensus 300 f~L 302 (302)
T KOG2780|consen 300 FFL 302 (302)
T ss_pred ccC
Confidence 998
No 2
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=1.1e-68 Score=495.01 Aligned_cols=279 Identities=35% Similarity=0.601 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhc--ccCCCcccCCCcccccCCCCcchhhh
Q 018273 44 KEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENT--REPDETVCRPDDDELFAGNDADEFSS 121 (358)
Q Consensus 44 k~~R~~~~~k~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~k~~p~tie~~--r~~d~t~~~~~d~e~~~~~~~def~~ 121 (358)
++||++||+|.+.++.++. .++++..++|++.+ +.+|+.|.+. --.|+-..+....|...-.-+|||.
T Consensus 7 R~RREylyrK~~E~~~k~~----~ekk~~lr~ALe~n-----k~ip~elrkda~~l~d~~~~ed~~~~~~~~~vddEy~- 76 (290)
T KOG2781|consen 7 RERREYLYRKALEEQDKSL----QEKKRRLREALEEN-----KKIPKELRKDALLLKDEIYYEDEGGEADDSHVDDEYR- 76 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcC-----CCCChHHHHhHHHhhhhhhccccccccccccccHHHH-
Confidence 8999999999999887774 33456677888887 8999988774 2222221111111111123358996
Q ss_pred hhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecC
Q 018273 122 ILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 201 (358)
Q Consensus 122 ~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP 201 (358)
++|..+|||+|||||+||+++.+|+|+|+.||||++.++||.+.+.++++.|..+|+|++|||+|++|.|.+|.|||||
T Consensus 77 -~ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlP 155 (290)
T KOG2781|consen 77 -WAGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLP 155 (290)
T ss_pred -hccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCeEEEEEecCCeEEEEeeee
Q 018273 202 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 281 (358)
Q Consensus 202 ~GPT~~FkI~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rRVvtF~nq~d~I~FRhhrY 281 (358)
.|||++|.|.||.+++||++.|+++..+|+||||||+|.+|++++.+|..|||. |+..++|||||.|++|||.||||.|
T Consensus 156 fGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~-pk~ds~Rvvtf~N~~DyIsFRhhvy 234 (290)
T KOG2781|consen 156 FGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPV-PKDDSKRVVTFANRNDYISFRHHVY 234 (290)
T ss_pred CCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCCC-CcCCcccEEEEecCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999995 8889999999999999999999988
Q ss_pred EEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCCCCccccccCC
Q 018273 282 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 358 (358)
Q Consensus 282 ~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~~~~~r~~f~l 358 (358)
.-..... |.|.|+||||.|+|+.|..||++.+.+++||+++|||+|+|+|-||
T Consensus 235 ~~~~~k~------------------------vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~~l 287 (290)
T KOG2781|consen 235 KKTDGKE------------------------VELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRDFL 287 (290)
T ss_pred ecCCCce------------------------EEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhhhh
Confidence 6543221 5799999999999999999999999999999999999999988665
No 3
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-42 Score=330.29 Aligned_cols=219 Identities=24% Similarity=0.324 Sum_probs=186.9
Q ss_pred CCceEEEEecCCCCCcHHHHHHHHHhcC-CCcc--ccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCC
Q 018273 127 CAPKILITTCRFNSNRGPAFISELLSVI-PNSH--YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 203 (358)
Q Consensus 127 ~~PKiLITTSr~pS~r~r~f~kdL~~v~-Pns~--~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~G 203 (358)
..|.|+|.+++-....+.+|..||+.+| ||+. ...|+.++|||++.+|..+|+|||+|++.+..+. +|+|+++|.|
T Consensus 24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~nl-slki~R~PqG 102 (405)
T KOG2963|consen 24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTETNL-SLKIARTPQG 102 (405)
T ss_pred cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccCce-eEEEEecCCC
Confidence 4799999999999999999999999999 9975 5778999999999999999999999999998865 6999999999
Q ss_pred ceEEEEEeceeehhhhccCCC-------CCCCCceeeecCCCCc---hhHHHHHHHHhcCCC-CCC----CCCCeEEEEE
Q 018273 204 PTAHFKLSKLVLRKDIKNHGN-------PTGHIPELVLNNFATR---LGHRVGRLIQSLFPQ-SPE----FRGRRVVTFH 268 (358)
Q Consensus 204 PT~~FkI~n~~l~kdi~~~g~-------~~~~~P~LIlnnF~t~---lg~~i~~mf~~LFP~-~p~----~~~rRVvtF~ 268 (358)
||++|+|..|+|.+||..... .+.|+|+||||||++. +-++++.|||+|||+ ++. .+++||++++
T Consensus 103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin 182 (405)
T KOG2963|consen 103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN 182 (405)
T ss_pred CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence 999999999999999987531 2689999999999954 668999999999999 343 3799999999
Q ss_pred e--cCCeEEEEeeeeEEEeccCCC---------------------------------C-CCCCccccchhhh--------
Q 018273 269 N--QRDFIFFRHHRYIFETKESKG---------------------------------S-DANGKKAKDAKSE-------- 304 (358)
Q Consensus 269 n--q~d~I~FRhhrY~~~~~~~~~---------------------------------~-~~s~s~~~d~~~~-------- 304 (358)
+ +++.|.||| |.|+....+. + ++|+|++++++.-
T Consensus 183 yn~dt~eIdmRH--ysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~ 260 (405)
T KOG2963|consen 183 YNRDTGEIDMRH--YSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDV 260 (405)
T ss_pred cCCCCCeeeeee--eEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccc
Confidence 6 567999999 6776544320 3 5788887766531
Q ss_pred ----------h----ccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCC
Q 018273 305 ----------K----TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE 348 (358)
Q Consensus 305 ----------~----~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~ 348 (358)
. ...++.+|+|+||||||||+|++|++|+|.|++.+|+|+.|++
T Consensus 261 ~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~ 318 (405)
T KOG2963|consen 261 KEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTE 318 (405)
T ss_pred hhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCH
Confidence 0 1123556899999999999999999999999999999999985
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=5.5e-41 Score=303.61 Aligned_cols=179 Identities=41% Similarity=0.650 Sum_probs=80.8
Q ss_pred EEecCCCCCcHHHHHHHHHhcC-CCccccccccc-cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEEE
Q 018273 133 ITTCRFNSNRGPAFISELLSVI-PNSHYYKRGTY-DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL 210 (358)
Q Consensus 133 ITTSr~pS~r~r~f~kdL~~v~-Pns~~~~R~k~-~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~FkI 210 (358)
||||++||.++++|++||+.+| |||.+.+|++. .+++++++|..++|+++++|++++++|++|||+++|+|||++|.|
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I 80 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI 80 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence 7999999999999999999999 99999999987 999999999999999999999999999999999999999999999
Q ss_pred eceeehhhhccCCC-CCCCCceeeecCCCCch---hHHHHHHHHhcCCCC-----CCCCCCeEEEEEecCCe-EEEEeee
Q 018273 211 SKLVLRKDIKNHGN-PTGHIPELVLNNFATRL---GHRVGRLIQSLFPQS-----PEFRGRRVVTFHNQRDF-IFFRHHR 280 (358)
Q Consensus 211 ~n~~l~kdi~~~g~-~~~~~P~LIlnnF~t~l---g~~i~~mf~~LFP~~-----p~~~~rRVvtF~nq~d~-I~FRhhr 280 (358)
.||++++|+++... +.+++|+|||+||.+++ ++++++||++|||.. +...++|||+|++++|. |||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~-- 158 (191)
T PF04427_consen 81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRH-- 158 (191)
T ss_dssp EEEE-HHHHT-------S---EEEEE------------------------------------------------------
T ss_pred EeEEEhhHhcccccCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 99999999987543 45788999999998766 899999999999993 23579999999999999 99999
Q ss_pred eEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEe
Q 018273 281 YIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 329 (358)
Q Consensus 281 Y~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI 329 (358)
|++....... .+-...|+|+||||||||+|++|
T Consensus 159 Yi~~~~~~~~----------------~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 159 YIFKSGSKNP----------------KKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp -------------------------------------------------
T ss_pred cccccccccc----------------cccccccccccccccccccccCC
Confidence 5221110000 00002369999999999999987
No 5
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=1.8e-37 Score=276.57 Aligned_cols=170 Identities=46% Similarity=0.717 Sum_probs=150.5
Q ss_pred EEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEec--CCCCceEEEeecCCCceEEEE
Q 018273 132 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN--RREPDALLIIGLPDGPTAHFK 209 (358)
Q Consensus 132 LITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~--r~~p~~L~I~~lP~GPT~~Fk 209 (358)
|||||++||.++++|++||+.++|++.+..|+++.+.+++++|...+.+++|++.|. +++|++|||+++|+|||++|.
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~ 80 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK 80 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence 699999999999999999999999999999999999999999999977777777777 899999999999999999999
Q ss_pred Eeceeehhhhcc--CCC-CCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCC-----CCCeEEEEEecCCeEEEEeeee
Q 018273 210 LSKLVLRKDIKN--HGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQRDFIFFRHHRY 281 (358)
Q Consensus 210 I~n~~l~kdi~~--~g~-~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~-----~~rRVvtF~nq~d~I~FRhhrY 281 (358)
|.+|.+.+|+.. .++ ...++|+||||||.+.+|++++.||+.|||..+.. ..+|||+|++++|.||||||+|
T Consensus 81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i 160 (180)
T smart00879 81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI 160 (180)
T ss_pred EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence 999999999987 334 35789999999999999999999999999985443 5799999999999999999776
Q ss_pred EEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeE
Q 018273 282 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 324 (358)
Q Consensus 282 ~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftL 324 (358)
.+..... ++.|+||||||+|
T Consensus 161 ~~~~~~~-----------------------~v~l~eiGPr~~l 180 (180)
T smart00879 161 KFGKKKP-----------------------RVELQEIGPRFTL 180 (180)
T ss_pred EccCCCC-----------------------ceEEEEecCCccC
Confidence 5511111 2699999999986
No 6
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=277.96 Aligned_cols=182 Identities=37% Similarity=0.576 Sum_probs=173.3
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeec-CCCceE
Q 018273 128 APKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGPTA 206 (358)
Q Consensus 128 ~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~l-P~GPT~ 206 (358)
.||+||||||+||.++++||++|..+|||+.+..||++++.++.+.|...|+++++|++|.+|+|..|.++++ |.||++
T Consensus 1 ~~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~ 80 (191)
T COG2136 1 MPKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTF 80 (191)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceE
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEEeceeehhhhccCCC-CCCCCceeeecCCCCchh-HHHHHHHHhc----CCCCCCCCCCeEEEEEecCCeEEEEeee
Q 018273 207 HFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLG-HRVGRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHR 280 (358)
Q Consensus 207 ~FkI~n~~l~kdi~~~g~-~~~~~P~LIlnnF~t~lg-~~i~~mf~~L----FP~~p~~~~rRVvtF~nq~d~I~FRhhr 280 (358)
.|+|+|+++.+++..++. ...|.|++|+|||++.+| +.++++|+.+ |++.|.....+|+++++++++++||+|+
T Consensus 81 ~f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~~ 160 (191)
T COG2136 81 SFKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHR 160 (191)
T ss_pred EEEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEeee
Confidence 999999999999999987 678999999999999999 8999999999 9998888899999999999999999999
Q ss_pred eEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcC
Q 018273 281 YIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 334 (358)
Q Consensus 281 Y~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f 334 (358)
|.+.. .. ++++|+||||+|+|..++.|+.
T Consensus 161 ~~~~~--~~-----------------------~~~~~vgp~~~~r~~~~~~g~~ 189 (191)
T COG2136 161 RVFEE--DG-----------------------IGLEEVGPRLTLRLWRMEDGRG 189 (191)
T ss_pred eEeee--ee-----------------------eeEEEeCceeeeehhhhhhccc
Confidence 99975 22 4899999999999999999964
No 7
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-37 Score=284.69 Aligned_cols=199 Identities=23% Similarity=0.361 Sum_probs=174.6
Q ss_pred hhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCcccccc--ccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEee
Q 018273 122 ILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIG 199 (358)
Q Consensus 122 ~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R--~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~ 199 (358)
-|.+ +.+|||++||+.|.++|+||+||..++||+....+ .+..+..|.++|...+|+.+++|..++....||||+.
T Consensus 45 ~w~N--K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~ 122 (299)
T KOG2971|consen 45 KWKN--KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSN 122 (299)
T ss_pred cccc--ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEec
Confidence 3544 67999999999999999999999999999986554 4678999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeceeehhhhccCCCCC-CCCceeeec-CCCC-chhHHHHHHHHhcCCCCCC------CCCCeEEEEEec
Q 018273 200 LPDGPTAHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFAT-RLGHRVGRLIQSLFPQSPE------FRGRRVVTFHNQ 270 (358)
Q Consensus 200 lP~GPT~~FkI~n~~l~kdi~~~g~~~-~~~P~LIln-nF~t-~lg~~i~~mf~~LFP~~p~------~~~rRVvtF~nq 270 (358)
+|+|||+.|.|.|+++|.|++..|||. +++|+|.|+ +|.+ ++-+++++||.+.|.. |. -..++|++|+.-
T Consensus 123 ~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgi-P~~hrkSkpf~Dhvf~Fsi~ 201 (299)
T KOG2971|consen 123 SPNGPSVKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGI-PKHHRKSKPFVDHVFTFSIL 201 (299)
T ss_pred CCCCCceEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCC-CCCCcccCCccceEEEEEEe
Confidence 999999999999999999999999996 789999998 6995 6668999999999966 33 246899999999
Q ss_pred CCeEEEEeeeeEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCCCC
Q 018273 271 RDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMD 350 (358)
Q Consensus 271 ~d~I~FRhhrY~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~~~ 350 (358)
+|.||||+ |+|...+. +.|+||||||+|.+++|.+|+|+| ...|.+..|..
T Consensus 202 D~~IWfRn--yqI~~~ed------------------------~~L~EiGPRfvl~~ikif~gsFgG---~~lYenp~yvs 252 (299)
T KOG2971|consen 202 DGKIWFRN--YQISEEED------------------------KTLIEIGPRFVLNVIKIFEGSFGG---PTLYENPKYVS 252 (299)
T ss_pred cCeEEEEE--eEeccccC------------------------cceeeeccHHHHhHHHHHhccCCC---ceeecCccccC
Confidence 99999999 88864332 389999999999999999999974 56677766654
Q ss_pred cc
Q 018273 351 TS 352 (358)
Q Consensus 351 ~~ 352 (358)
.+
T Consensus 253 pn 254 (299)
T KOG2971|consen 253 PN 254 (299)
T ss_pred HH
Confidence 44
No 8
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8e-32 Score=245.44 Aligned_cols=196 Identities=21% Similarity=0.349 Sum_probs=169.6
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhcCCCcccccc--ccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCce
Q 018273 128 APKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 205 (358)
Q Consensus 128 ~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R--~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT 205 (358)
++++||++||+++.+.|+|++||..++|+|....+ -+..+.++.++|...+|+++++|..++....+||+++.|+|||
T Consensus 30 kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGpt 109 (283)
T COG5154 30 KQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGPT 109 (283)
T ss_pred cceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCCe
Confidence 78999999999999999999999999999987666 3778999999999999999999999999999999999999999
Q ss_pred EEEEEeceeehhhhccCCCCC-CCCceeeecC-CCC-chhHHHHHHHHhcCCCCCC-----CCCCeEEEEEecCCeEEEE
Q 018273 206 AHFKLSKLVLRKDIKNHGNPT-GHIPELVLNN-FAT-RLGHRVGRLIQSLFPQSPE-----FRGRRVVTFHNQRDFIFFR 277 (358)
Q Consensus 206 ~~FkI~n~~l~kdi~~~g~~~-~~~P~LIlnn-F~t-~lg~~i~~mf~~LFP~~p~-----~~~rRVvtF~nq~d~I~FR 277 (358)
+.|+|+|+++|.|+...||+. +++|.|.|+- |.+ |+-+.++++|++.|..-|. -..++|++|...+|.||||
T Consensus 110 vkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWvR 189 (283)
T COG5154 110 VKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVR 189 (283)
T ss_pred EEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEEE
Confidence 999999999999999999986 7899999985 985 6678999999999976221 2468999999999999999
Q ss_pred eeeeEEE-eccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCC
Q 018273 278 HHRYIFE-TKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE 348 (358)
Q Consensus 278 hhrY~~~-~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~ 348 (358)
. |.|. ..+.+ .+. |+|.||||||+|..++|.+|+|+|. ..|.+.++
T Consensus 190 ~--YeI~re~ed~------------------~~d--v~L~EIGPRfVmtvi~iLEgsFgGp---~iYkn~~~ 236 (283)
T COG5154 190 C--YEIGRENEDK------------------SKD--VKLEEIGPRFVMTVIKILEGSFGGP---AIYKNETF 236 (283)
T ss_pred E--Eeeccccccc------------------ccc--ceeeeeccHHHHHHHHHHHhccCCc---eeeecccc
Confidence 9 8884 21111 111 6899999999999999999999754 45555544
No 9
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.96 E-value=7.7e-29 Score=228.08 Aligned_cols=125 Identities=20% Similarity=0.343 Sum_probs=117.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCC---CceEE
Q 018273 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPD---GPTAH 207 (358)
Q Consensus 131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~---GPT~~ 207 (358)
||||||++||+++++||+||..+||||.+++||+++|++|++.|..+|+|++|||+|++|+|++|.|+|||. |||++
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~ 81 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY 81 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999975 55999
Q ss_pred EEEeceeehhhh--ccCCCCCCCCceeeecCCCCchhH-HHHHHHHhcCCC
Q 018273 208 FKLSKLVLRKDI--KNHGNPTGHIPELVLNNFATRLGH-RVGRLIQSLFPQ 255 (358)
Q Consensus 208 FkI~n~~l~kdi--~~~g~~~~~~P~LIlnnF~t~lg~-~i~~mf~~LFP~ 255 (358)
|+|+||.+.+|| ++++.++.|.|+||.+||.+.+|. ..|..+.+.+.-
T Consensus 82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi 132 (208)
T PRK03972 82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGG 132 (208)
T ss_pred EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999 568888999999999999999986 667777777776
No 10
>PRK00933 ribosomal biogenesis protein; Validated
Probab=99.32 E-value=1.7e-11 Score=110.14 Aligned_cols=114 Identities=20% Similarity=0.410 Sum_probs=87.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEEE
Q 018273 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL 210 (358)
Q Consensus 131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~FkI 210 (358)
++||||++||.++++||++|..++ |+.|++|++.++++|++.|.. .+++||+|++++|++|.|+.+-..+.+.+.|
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~ 76 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL 76 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence 489999999999999999999999 999999999999999987654 4999999999999999999998778777765
Q ss_pred eceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcC
Q 018273 211 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF 253 (358)
Q Consensus 211 ~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LF 253 (358)
++.+..++... ......|. .+++... +.-++++|....
T Consensus 77 -~v~~~~~~~~~-~~~~~~p~--~~~~~~~-~~~~~e~f~~~l 114 (165)
T PRK00933 77 -SVKLQREISGP-VFKNRRPI--KSAFDVG-GDELAELFDYFL 114 (165)
T ss_pred -EeeeecccCcc-eeecCCCc--ccchhhH-HHHHHHHHHHHH
Confidence 46777666432 22233443 3333322 555666665543
No 11
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=9.2e-08 Score=91.60 Aligned_cols=171 Identities=17% Similarity=0.249 Sum_probs=126.1
Q ss_pred CcHHHHHHHHHhc-CCCccccccccc-----cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCc---eEEEEEe
Q 018273 141 NRGPAFISELLSV-IPNSHYYKRGTY-----DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP---TAHFKLS 211 (358)
Q Consensus 141 ~r~r~f~kdL~~v-~Pns~~~~R~k~-----~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GP---T~~FkI~ 211 (358)
..+..-|.||-.+ .|.+..++|+.. .-.-+..+...+.|+-+++-+-+++.|+.|+|.+.=++- .+-+.|.
T Consensus 40 ~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~ 119 (307)
T KOG3031|consen 40 KTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIE 119 (307)
T ss_pred hHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhh
Confidence 4556667777665 388877777631 123356677778888888888889999999999887664 4678899
Q ss_pred ceeehhhhccCCCCCCCCceeeecCC--C-CchhHHHHHHHHhcCCCCC-C---C-CCCeEEEEEecCCe-EEEEeeeeE
Q 018273 212 KLVLRKDIKNHGNPTGHIPELVLNNF--A-TRLGHRVGRLIQSLFPQSP-E---F-RGRRVVTFHNQRDF-IFFRHHRYI 282 (358)
Q Consensus 212 n~~l~kdi~~~g~~~~~~P~LIlnnF--~-t~lg~~i~~mf~~LFP~~p-~---~-~~rRVvtF~nq~d~-I~FRhhrY~ 282 (358)
||...+|+...+-..+..|.|+|+|+ . ++--+++..+|...|--.+ + . .-++|+.|.-.++. |+|||| .
T Consensus 120 ~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y--~ 197 (307)
T KOG3031|consen 120 NYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVY--R 197 (307)
T ss_pred hhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeee--e
Confidence 99999999886645578999999984 4 4555899999999997621 1 2 35799999987765 999994 4
Q ss_pred EEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeec
Q 018273 283 FETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQH 331 (358)
Q Consensus 283 ~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~ 331 (358)
........ .-=++.|.|+||++.|.+++..-
T Consensus 198 lklkKs~~------------------~~PRiELeE~GPsldf~irR~~~ 228 (307)
T KOG3031|consen 198 LKLKKSGT------------------RTPRIELEEMGPSLDFEIRRTKL 228 (307)
T ss_pred eeeeeccC------------------CCCceehhhcCCceeEEEEeccC
Confidence 54333221 01136899999999999998764
No 12
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0023 Score=60.87 Aligned_cols=142 Identities=19% Similarity=0.286 Sum_probs=97.2
Q ss_pred HHHHhCCCceEEEEEecCCCCceEEEeecCCC---ceEEEEEeceeehhhhccCCCCCCCCceeeecC--CCC-chhHHH
Q 018273 172 EYAKKKDFTSIIVVHTNRREPDALLIIGLPDG---PTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNN--FAT-RLGHRV 245 (358)
Q Consensus 172 ~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~G---PT~~FkI~n~~l~kdi~~~g~~~~~~P~LIlnn--F~t-~lg~~i 245 (358)
-+...+.|.-.+++...++.+..|+|.+.=+= -.+-|.|.+|....|....+...+-.|.++|.| |++ |.-++|
T Consensus 77 ffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~i 156 (316)
T COG5106 77 FFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRI 156 (316)
T ss_pred HHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCccCCceEEEEeccccccchHHHHH
Confidence 34556677777888888888888988776432 135678889999999888776678899999985 874 556789
Q ss_pred HHHHHhcCCCCCCC-----CCCeEEEEEecCC----e----EEEEeeeeEEEeccCCCCCCCCccccchhhhhccccccc
Q 018273 246 GRLIQSLFPQSPEF-----RGRRVVTFHNQRD----F----IFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVI 312 (358)
Q Consensus 246 ~~mf~~LFP~~p~~-----~~rRVvtF~nq~d----~----I~FRhhrY~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~ 312 (358)
..+|-..|--.+.. .-..|+....+.+ + +.||- |....-... +.--+
T Consensus 157 ksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRV--yk~k~~kt~------------------~~lpr 216 (316)
T COG5106 157 KSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRV--YKTKLLKTK------------------TNLPR 216 (316)
T ss_pred HHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeee--eeccccccc------------------CCCCc
Confidence 99999988864421 1246666664332 3 46787 433211111 00113
Q ss_pred cceeeeccceeEEEEEeecCc
Q 018273 313 TRLQECGPRFTLKLVSLQHGT 333 (358)
Q Consensus 313 v~L~EIGPRftLkL~kI~~G~ 333 (358)
+.|.|||||+.+++.+++--.
T Consensus 217 ~elee~GPrldf~i~R~~~~s 237 (316)
T COG5106 217 LELEECGPRLDFEIVRSYHCS 237 (316)
T ss_pred eehhhcccceeeEEEeecCCC
Confidence 689999999999999988533
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=95.75 E-value=0.051 Score=50.94 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=59.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeec------CCCc
Q 018273 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL------PDGP 204 (358)
Q Consensus 131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~l------P~GP 204 (358)
.+|||+.+++..+...++.+...+ +..|++|++.++.+|. ...+..+++||.-+-..- .+.++++ |-||
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~-~~~~~~~~~~~~~~~~~ 181 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRGM-AVNFYRLDVTKERPVGP 181 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCce-EEEEEEeccccccccCC
Confidence 589999999998888889888766 7788999999998776 445678888886654432 4666664 7799
Q ss_pred eEEEEEe
Q 018273 205 TAHFKLS 211 (358)
Q Consensus 205 T~~FkI~ 211 (358)
.+.+++-
T Consensus 182 ~~~~~~~ 188 (208)
T PRK03972 182 LIFVKIW 188 (208)
T ss_pred cEEEEEE
Confidence 9988864
No 14
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=72.79 E-value=1.9 Score=42.69 Aligned_cols=41 Identities=34% Similarity=0.369 Sum_probs=33.3
Q ss_pred eeeeccceeEEEEEeecCcCCCC--CceeEEEeCCCCCccccc
Q 018273 315 LQECGPRFTLKLVSLQHGTFDTK--GGEFEWVHKPEMDTSRRR 355 (358)
Q Consensus 315 L~EIGPRftLkL~kI~~G~f~~~--~g~~ew~~k~~~~~~r~~ 355 (358)
-.-|||-|+|.||.|+.|--..+ .+...+.||-.|..+|-+
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~~ka~v~ 228 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVMHKARVR 228 (302)
T ss_pred ccccCCcEEEEeeheecccccccccccccCcceeeeccceEEE
Confidence 35689999999999999987664 477789999888777643
No 15
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=68.63 E-value=15 Score=35.39 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=54.4
Q ss_pred hhhhhhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEE
Q 018273 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 197 (358)
Q Consensus 118 ef~~~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I 197 (358)
-|+ ||.|..-|+.+-+.- ...+.+|+.-.+.++. +++.+++.. ++.+||+|-++--.|....+
T Consensus 102 ~fs-ywDGs~hrr~v~vKK---GdtI~~FL~~~r~~l~------------~~f~el~~v-svd~LM~VkedlIiPHhy~F 164 (239)
T PF04921_consen 102 PFS-YWDGSGHRRTVRVKK---GDTIWQFLEKCRKQLA------------KEFRELRRV-SVDDLMYVKEDLIIPHHYTF 164 (239)
T ss_pred EEE-EECCCCCcceEEEcC---CCCHHHHHHHHHHHHH------------HHhHHHHhc-CHhheeeeccceeccCCcee
Confidence 565 999988899333332 3347788887777665 445666654 88999999887666655555
Q ss_pred eec-------CCCceEEEEEec
Q 018273 198 IGL-------PDGPTAHFKLSK 212 (358)
Q Consensus 198 ~~l-------P~GPT~~FkI~n 212 (358)
+.| +.||-+.|.+..
T Consensus 165 Y~fI~nka~GksGpLF~fd~~~ 186 (239)
T PF04921_consen 165 YDFIVNKARGKSGPLFDFDVHD 186 (239)
T ss_pred eeeeeccccCCCCCeeeccCCc
Confidence 443 778888888776
No 16
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=64.26 E-value=20 Score=27.47 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=51.1
Q ss_pred eEEEEecCC-CCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEE
Q 018273 130 KILITTCRF-NSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (358)
Q Consensus 130 KiLITTSr~-pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~ 207 (358)
.|+|+.... .-.....++..|+..==.+....+ ..++..-...|...|+..+|+|..+.-....+.+..+..|-...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 556665432 233566777777754112223234 46999999999999999999999876545567787777665433
No 17
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=56.77 E-value=27 Score=27.18 Aligned_cols=67 Identities=13% Similarity=-0.011 Sum_probs=44.1
Q ss_pred cHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEE
Q 018273 142 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 209 (358)
Q Consensus 142 r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~Fk 209 (358)
....++..|+..==.+....+. .+++.-+..|...|+..+|++.+..-....+.|-.+-.|-.....
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~ 85 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEIS 85 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEe
Confidence 3455555665421112222343 488889999999999999999987644456888888777655443
No 18
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.93 E-value=65 Score=26.86 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=51.6
Q ss_pred CceEEEEecC--CC-CCcHHHHHHHHHhcCCCc-cccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCC
Q 018273 128 APKILITTCR--FN-SNRGPAFISELLSVIPNS-HYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 203 (358)
Q Consensus 128 ~PKiLITTSr--~p-S~r~r~f~kdL~~v~Pns-~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~G 203 (358)
.+.|+|.... .. ......++..|+.- .-+ ....+ .+++.-+..|...|+..+|||.++.-....+.|..+..|
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~-gi~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~ 102 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELREL-GFSVKYDDS--GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSM 102 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHC-CCEEEEeCC--CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCC
Confidence 4567777654 22 22445666666642 111 12223 699999999999999999999987655556888888777
Q ss_pred ceEEE
Q 018273 204 PTAHF 208 (358)
Q Consensus 204 PT~~F 208 (358)
-....
T Consensus 103 ~~~~v 107 (121)
T cd00858 103 RQVRV 107 (121)
T ss_pred ceEEE
Confidence 55443
No 19
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=45.74 E-value=50 Score=32.61 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=43.3
Q ss_pred hhhhhhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEE
Q 018273 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 197 (358)
Q Consensus 118 ef~~~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I 197 (358)
-|| ||.|..--+.+-+.-+++ +.+|+.--...+ -+|+.++ ...++..||+|.|+--.|.+-.+
T Consensus 190 t~s-YWDGsgHRr~v~~rKGnt---i~qfL~~~~e~L------------~kdF~El-rs~~~e~LmyvKEDLIiPH~~sF 252 (331)
T KOG2894|consen 190 TFS-YWDGSGHRRNVKVRKGNT---IQQFLQKALEQL------------RKDFREL-RSAGVEQLMYVKEDLIIPHHHSF 252 (331)
T ss_pred EEE-eecCCCcceeeeecCCCh---HHHHHHHHHHHH------------HHHHHHH-HHhhHHHhhhhhhheecccchhH
Confidence 365 898877666666555554 444443333222 1233333 23456677777775544443333
Q ss_pred eec-------CCCceEEEEEec
Q 018273 198 IGL-------PDGPTAHFKLSK 212 (358)
Q Consensus 198 ~~l-------P~GPT~~FkI~n 212 (358)
+.+ -.||-++|-+++
T Consensus 253 ydfIvtkArGKsGPLF~FDvh~ 274 (331)
T KOG2894|consen 253 YDFIVTKARGKSGPLFHFDVHD 274 (331)
T ss_pred HHHHHHHhccCCCCceeeechh
Confidence 222 469999998864
No 20
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.01 E-value=56 Score=24.39 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=48.2
Q ss_pred ceEEEEecCCCC-CcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEE
Q 018273 129 PKILITTCRFNS-NRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (358)
Q Consensus 129 PKiLITTSr~pS-~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~ 207 (358)
+.|+|.+..... .....++..|+.-==...... ...++++....|...|+..++++.+.......+.+..+..|....
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~-~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~ 80 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDY-GGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQET 80 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec-CCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEE
Confidence 356777654422 356677888875311112212 123688999999999999999998643333347777776665433
No 21
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=42.49 E-value=39 Score=26.42 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=57.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCCcc---ccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEE
Q 018273 131 ILITTCRFNSNRGPAFISELLSVIPNSH---YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (358)
Q Consensus 131 iLITTSr~pS~r~r~f~kdL~~v~Pns~---~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~ 207 (358)
|.|++-..-+.....++.+|...+-+.. .+.-...++..=+..|...|+..+||+.+..-....+.|-.+-.|-..+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~ 81 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQET 81 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEE
Confidence 4444433324456777777777774432 2222778899999999999999999999776444568888888887666
Q ss_pred EEEec
Q 018273 208 FKLSK 212 (358)
Q Consensus 208 FkI~n 212 (358)
..+.+
T Consensus 82 v~~~e 86 (94)
T PF03129_consen 82 VSLEE 86 (94)
T ss_dssp EECCH
T ss_pred EEHHH
Confidence 66554
No 22
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=36.97 E-value=57 Score=30.98 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChh-hHhh-cccCCC
Q 018273 55 KHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPR-TIEN-TREPDE 100 (358)
Q Consensus 55 ~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~k~~p~-tie~-~r~~d~ 100 (358)
++++++-++++|.++.++......+|..+||. |+ .|-| ||++..
T Consensus 143 kkErKKlRr~rR~e~~kEkq~kIrlGL~ppP~--PKVKlSNLMrVL~~ 188 (223)
T PF08572_consen 143 KKERKKLRRQRRQEKQKEKQDKIRLGLEPPPP--PKVKLSNLMRVLGN 188 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CcccHHHHHHHhhc
Confidence 45566666666766666666777888887664 45 6777 577643
No 23
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=36.77 E-value=1.5e+02 Score=22.52 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEE
Q 018273 164 TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (358)
Q Consensus 164 k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~ 207 (358)
..+++.-...|...|+..++++.+..-....+.|..+-.|....
T Consensus 40 ~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~~~~ 83 (94)
T cd00738 40 ERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGESET 83 (94)
T ss_pred CcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCceeE
Confidence 46899999999999999999999765334457777776665443
No 24
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=35.91 E-value=1.9e+02 Score=28.30 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=46.5
Q ss_pred CCceEEEEecCCCCCcH--HHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecC-----C-CCceEEEe
Q 018273 127 CAPKILITTCRFNSNRG--PAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNR-----R-EPDALLII 198 (358)
Q Consensus 127 ~~PKiLITTSr~pS~r~--r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r-----~-~p~~L~I~ 198 (358)
....|||++-....-++ ..++.+|=.-==.+.+......++.|+.+.|...|++++|||.+.. + .-..|.|-
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 35678886554333212 2233333111012344455667999999999999999999999854 1 11126666
Q ss_pred ecCCCc
Q 018273 199 GLPDGP 204 (358)
Q Consensus 199 ~lP~GP 204 (358)
++-.+-
T Consensus 84 ~l~~~~ 89 (273)
T PF12745_consen 84 SLEKKK 89 (273)
T ss_pred ccCCCc
Confidence 665554
No 25
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=31.48 E-value=1.7e+02 Score=23.77 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred hhhhhhhcCCCceEEEE-ec-CCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceE
Q 018273 118 EFSSILKQGCAPKILIT-TC-RFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDAL 195 (358)
Q Consensus 118 ef~~~f~~~~~PKiLIT-TS-r~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L 195 (358)
....+|+.-..|=.|+. +. ...|..+++|++|+..+=|.-......... ....+.+.... +.+++
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~--~~~gI 75 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG--EDTGI 75 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC--CcccE
Confidence 45567777666665543 43 356678999999999887754433222111 24555554332 45678
Q ss_pred EEeecCCCc
Q 018273 196 LIIGLPDGP 204 (358)
Q Consensus 196 ~I~~lP~GP 204 (358)
++.-+|.|-
T Consensus 76 rF~GiP~Gh 84 (94)
T cd02974 76 RFAGIPMGH 84 (94)
T ss_pred EEEecCCch
Confidence 888888883
No 26
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.40 E-value=67 Score=30.14 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=15.4
Q ss_pred cccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 018273 38 PSMIKNKEKRS-AVHAKLKHQKKVEKRKKLKARDA 71 (358)
Q Consensus 38 ~~~i~nk~~R~-~~~~k~~~~k~~~k~~~~~~r~~ 71 (358)
...=++|..|+ .....++++...++.+.|+.+++
T Consensus 41 TGFHKRKveRrK~Aqeqikeq~ReerielRk~~rq 75 (217)
T KOG4709|consen 41 TGFHKRKVERRKAAQEQIKEQLREERIELRKERRQ 75 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444544444 44444444444445555554433
No 27
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=30.88 E-value=1.4e+02 Score=30.96 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=55.5
Q ss_pred ce-EEEEecCCCCCcHHHHHHHHHhcC--CCc-cccccc------cccHHHHHHHHHhCCCceEEEEEecCCCCceEEEe
Q 018273 129 PK-ILITTCRFNSNRGPAFISELLSVI--PNS-HYYKRG------TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLII 198 (358)
Q Consensus 129 PK-iLITTSr~pS~r~r~f~kdL~~v~--Pns-~~~~R~------k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~ 198 (358)
+| .++..+++.+...-...+-+.++| |.+ ...-|. ..+..+|.+.+..+|+++..+|.... +-+.
T Consensus 24 qk~~i~~G~rGS~KSy~~alk~i~kl~~~~~~d~lvIR~v~nt~k~St~~~~~e~l~e~gv~~~f~~~~s~-----pe~i 98 (414)
T COG1783 24 QKYFIAKGGRGSSKSYATALKNIEKLLSEPGIDVLVIREVENTHKQSTYALFKEALSELGVTKFFKISKSS-----PEII 98 (414)
T ss_pred heEEEEEccCCCchhHHHHHHHHHHHHcCCCCcEEEEEEeccccchhHHHHHHHHHHHhCccceeEEecCC-----hhhe
Confidence 45 455566666665555666777777 776 333342 33478899999999999998887743 4477
Q ss_pred ecCCCceEEEEEec
Q 018273 199 GLPDGPTAHFKLSK 212 (358)
Q Consensus 199 ~lP~GPT~~FkI~n 212 (358)
+.+.|--+.|+...
T Consensus 99 ~~~~G~ri~F~G~d 112 (414)
T COG1783 99 LKDTGQRIIFKGLD 112 (414)
T ss_pred ecccCcEEEEecCC
Confidence 89999999998653
No 28
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.09 E-value=1.9e+02 Score=30.23 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=60.7
Q ss_pred CCCceEEEEecCCCC-CcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCC
Q 018273 126 GCAPKILITTCRFNS-NRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 203 (358)
Q Consensus 126 ~~~PKiLITTSr~pS-~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~G 203 (358)
...+.|+|.+..... .....++..||.-=+++......+. ++.-.+.|...|+..+||+.++.-.-..+.|-+|-.|
T Consensus 333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~-~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~ 410 (429)
T COG0124 333 ETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK-LKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG 410 (429)
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecccc-HHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC
Confidence 347888998877665 6888999999987677655443333 9999999999999999999998765566888888777
No 29
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.66 E-value=3.1e+02 Score=21.35 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred cHHHHHHHHHhcCCCcc----ccccccccHHHHHHHHHhCCCceEEEE
Q 018273 142 RGPAFISELLSVIPNSH----YYKRGTYDLKKIIEYAKKKDFTSIIVV 185 (358)
Q Consensus 142 r~r~f~kdL~~v~Pns~----~~~R~k~~Lkdiv~~A~~~~~T~lIi~ 185 (358)
.+..++..|...+|... +..+..-++.+.++.+...|+++++++
T Consensus 18 ~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 18 DIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 55667777777676432 223335779999999999999999997
No 30
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=26.38 E-value=77 Score=30.30 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=50.0
Q ss_pred cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEEEeceeehhhhccCCCCCCCCceee-e-cCCCCchhH
Q 018273 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFATRLGH 243 (358)
Q Consensus 166 ~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~FkI~n~~l~kdi~~~g~~~~~~P~LI-l-nnF~t~lg~ 243 (358)
+... ..-|-..||..+=+ .-..+.....+|+| |-|++-.|.=-.-.+.|+..+-.++++|.++ | |+++.....
T Consensus 31 s~~~-y~~aL~~GcRcvEl-D~Wdg~~~ep~V~H---G~t~ts~i~f~dvl~~I~~~aF~~s~yPvILslE~hcs~~qQ~ 105 (228)
T cd08599 31 STAP-IIEALLRGCRVIEL-DLWPGGRGDICVLH---GGTLTKPVKFEDCIKAIKENAFTASEYPVIITLENHLSPELQA 105 (228)
T ss_pred CHHH-HHHHHHhCCCEEEE-EeecCCCCCeEEEe---CCCCcCCcCHHHHHHHHHHHhccCCCCCEEEEEecCCCHHHHH
Confidence 3444 44455789887654 22333333456666 7665543332233344444455567899553 4 468888777
Q ss_pred HHHHHHHhcCCC
Q 018273 244 RVGRLIQSLFPQ 255 (358)
Q Consensus 244 ~i~~mf~~LFP~ 255 (358)
.++.+|...|..
T Consensus 106 ~~a~~l~~~lGd 117 (228)
T cd08599 106 KAAQILRETLGD 117 (228)
T ss_pred HHHHHHHHHHhh
Confidence 888888877764
No 31
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=23.96 E-value=1e+02 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.3
Q ss_pred cCCCccccccccc-----cHHHHHHHHHhCCCceEEEEEecCC
Q 018273 153 VIPNSHYYKRGTY-----DLKKIIEYAKKKDFTSIIVVHTNRR 190 (358)
Q Consensus 153 v~Pns~~~~R~k~-----~Lkdiv~~A~~~~~T~lIi~~E~r~ 190 (358)
++|...|..-... .|.+.+......||.|+++++.+..
T Consensus 54 l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 54 LFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred ecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcc
Confidence 4588887665422 3778888889999999999998754
No 32
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=23.56 E-value=1.5e+02 Score=30.55 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=55.2
Q ss_pred CceEEEEecC-CCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceE
Q 018273 128 APKILITTCR-FNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 206 (358)
Q Consensus 128 ~PKiLITTSr-~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~ 206 (358)
.+.|+|+... .......+++..|+.-=-.+....+ ..++++.+..|...|+..++|+.++.-....+.|-++-.|-..
T Consensus 325 ~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~-~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~ 403 (430)
T CHL00201 325 SIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS-SSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQE 403 (430)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC-CCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcE
Confidence 3457777532 2223456677777653112222222 3568999999999999999999987666667888888777665
Q ss_pred EEEEec
Q 018273 207 HFKLSK 212 (358)
Q Consensus 207 ~FkI~n 212 (358)
...+.+
T Consensus 404 ~i~~~~ 409 (430)
T CHL00201 404 NAQYSN 409 (430)
T ss_pred EEcHHH
Confidence 554443
No 33
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=22.59 E-value=1.8e+02 Score=25.34 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=17.1
Q ss_pred cCCcccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 018273 35 EILPSMIKNKEKRSAVHAKLKHQKKV-EKRKKLKARDA 71 (358)
Q Consensus 35 ~~~~~~i~nk~~R~~~~~k~~~~k~~-~k~~~~~~r~~ 71 (358)
-.++..=|+|..|.....+..+++.+ ++.+.|++.+.
T Consensus 22 eyLTGFhKRK~~Rrk~Aqe~~~~k~r~er~eeRk~~R~ 59 (137)
T PF09805_consen 22 EYLTGFHKRKKQRRKKAQEQAEEKEREERIEERKEIRE 59 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665555554444333333 33444444333
No 34
>PF14996 RMP: Retinal Maintenance
Probab=22.24 E-value=62 Score=28.95 Aligned_cols=17 Identities=47% Similarity=1.030 Sum_probs=13.9
Q ss_pred eEEEEEe-----cCCeEEEEee
Q 018273 263 RVVTFHN-----QRDFIFFRHH 279 (358)
Q Consensus 263 RVvtF~n-----q~d~I~FRhh 279 (358)
+||.|.+ .-||+|||++
T Consensus 77 ~V~~f~~~~W~~~~DYLFfRNn 98 (146)
T PF14996_consen 77 RVVRFDDYKWDKSCDYLFFRNN 98 (146)
T ss_pred EEEEeCCCccCCCCCEEEEecC
Confidence 7888875 3589999995
No 35
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=80 Score=30.14 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=32.8
Q ss_pred cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEE
Q 018273 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 209 (358)
Q Consensus 166 ~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~Fk 209 (358)
--++|++++..-|+.++||++...+. ......+..||.+|.-
T Consensus 101 F~e~l~~~~kSSG~~~VIVLSss~~~--~~~~L~~srgP~~Y~l 142 (262)
T KOG3112|consen 101 FQEELVELLKSSGARRVIVLSSSFGF--EKRVLEESRGPWAYRL 142 (262)
T ss_pred HHHHHHHHHHhcCCceEEEEecchHH--HhhhhhhccCCeeEEc
Confidence 34678999999999999999987752 3555667789988764
No 36
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=20.70 E-value=1.9e+02 Score=30.61 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=52.9
Q ss_pred cchhhhhhhcCCCc-eEEEEecCC--CCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCC---ceEEEEEecC
Q 018273 116 ADEFSSILKQGCAP-KILITTCRF--NSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDF---TSIIVVHTNR 189 (358)
Q Consensus 116 ~def~~~f~~~~~P-KiLITTSr~--pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~---T~lIi~~E~r 189 (358)
-+....||..-..| .+.++++.. -|..+++|+++|..+=|.-++......+= -+.+...|+ ..++++ ...
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~---~~~~~~~~v~~~P~~~i~-~~~ 429 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE---PESETLPKITKLPTVALL-DDD 429 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc---hhhHhhcCCCcCCEEEEE-eCC
Confidence 34677888877778 454555432 56789999999998877654432222221 233334444 334443 334
Q ss_pred CCCceEEEeecCCCce
Q 018273 190 REPDALLIIGLPDGPT 205 (358)
Q Consensus 190 ~~p~~L~I~~lP~GPT 205 (358)
+...+++++-+|.|--
T Consensus 430 ~~~~~i~f~g~P~G~E 445 (555)
T TIGR03143 430 GNYTGLKFHGVPSGHE 445 (555)
T ss_pred CcccceEEEecCccHh
Confidence 5567799999999854
Done!