Query 018276
Match_columns 358
No_of_seqs 231 out of 1080
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 1E-35 3.5E-40 270.1 15.3 139 201-341 43-182 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 3.3E-32 1.1E-36 251.1 13.7 126 213-343 16-142 (212)
3 3phx_A RNA-directed RNA polyme 100.0 1.2E-29 4E-34 230.0 14.1 126 217-346 31-165 (185)
4 3phu_A RNA-directed RNA polyme 100.0 3.7E-29 1.3E-33 232.4 15.8 126 217-346 31-165 (219)
5 1tff_A Ubiquitin thiolesterase 99.8 6.4E-21 2.2E-25 178.1 14.2 95 245-342 133-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 5.3E-19 1.8E-23 165.0 16.4 93 245-340 136-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 3.4E-18 1.2E-22 164.1 15.9 103 244-348 170-281 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 1.3E-17 4.3E-22 166.1 11.3 94 244-340 300-399 (399)
9 3zrh_A Ubiquitin thioesterase 98.5 1.2E-06 4.2E-11 87.8 13.6 128 216-344 188-352 (454)
10 3dkb_A Tumor necrosis factor, 98.5 9.2E-07 3.1E-11 87.4 11.8 127 216-343 111-285 (390)
11 4aq3_A Apoptosis regulator BCL 26.6 85 0.0029 27.4 5.1 89 206-296 20-119 (169)
12 2nl9_A Fusion protein consisti 22.2 87 0.003 26.6 4.3 55 242-296 38-104 (157)
13 2obb_A Hypothetical protein; s 20.7 21 0.00071 30.3 0.0 18 208-225 32-49 (142)
14 4hw4_A Induced myeloid leukemi 20.3 1E+02 0.0035 26.5 4.3 55 243-297 39-105 (157)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=1e-35 Score=270.05 Aligned_cols=139 Identities=24% Similarity=0.427 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccC
Q 018276 201 EISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKS 280 (358)
Q Consensus 201 ~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~ 280 (358)
...+.+-+.+.|+.+||++++|+|||||||||||+||++++..|..||+.|++||++|++.|.+||+++|++||++|+++
T Consensus 43 ~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~ 122 (185)
T 3pfy_A 43 EQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 122 (185)
T ss_dssp HHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC--------------
T ss_pred HHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCC
Confidence 33344444444479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHhCCeEEEEecCCCceeEEEcC-CCCCCCCeEEEEecCCCcceeeecC
Q 018276 281 GEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILP-HVPKSKRVIFLSFWAEVHYNSIYPE 341 (358)
Q Consensus 281 gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P-~~~~~~~~I~Lsy~~~~HYdSV~p~ 341 (358)
++|||++||+|||++|+++|.|++.... .+.+++ ......++|+|+|++++|||||+..
T Consensus 123 ~~WGg~iEL~AlS~~~~v~I~V~~~~~~--~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p 182 (185)
T 3pfy_A 123 NCHGNHIEMQAMAEMYNRPVEVYQYSTE--PINTFHGIHQNEDEPIRVSYHRNIHYNSVVNP 182 (185)
T ss_dssp ---CCHHHHHHHHHHHTSCEEEESSCSS--CSEEECTTSCCTTSCEEEEEETTTEEEEEECC
T ss_pred CccchHHHHHHHHHhhCCcEEEEECCCC--CeEEecCccCCCCCEEEEEECCCCCcccccCC
Confidence 9999999999999999999999987542 233443 2334678999999999999999854
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.97 E-value=3.3e-32 Score=251.09 Aligned_cols=126 Identities=17% Similarity=0.262 Sum_probs=111.3
Q ss_pred hhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHh-hhcCccHHHHHHhhccCCccCchHHHHH
Q 018276 213 QLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYE-GYVPMAYSDYLKKMNKSGEWGDHVTLQA 291 (358)
Q Consensus 213 ~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~-~fV~~~~~eYl~kM~k~gtWGg~iELqA 291 (358)
...||++++|+|||||||||||+|| +++..|..||+.|++||++||+.|. .|++++|++||++|+++++|||++||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 3457999999999999999999999 9999999999999999999999995 6778999999999999999999999999
Q ss_pred HHHHhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeeecCCC
Q 018276 292 AADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGE 343 (358)
Q Consensus 292 aA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~d 343 (358)
||++|+++|.|++... ...+.|.+.. ..++|+|+|+ ++|||||++..+
T Consensus 95 ls~~~~~~I~V~~~~~-~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~~~d 142 (212)
T 3by4_A 95 ISDALAVAIYVVDIDA-VKIEKFNEDK--FDNYILILFN-GIHYDSLTMNEF 142 (212)
T ss_dssp HHHHHTCEEEEEETTT-TEEEEESTTT--CSEEEEEEEC-SSCEEEEEETTT
T ss_pred HHHHHCCCEEEEECCC-CCeEEeCCCC--CCCeEEEEEc-CCcceEEecCCC
Confidence 9999999999999753 2344555532 5679999997 799999998433
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.96 E-value=1.2e-29 Score=229.95 Aligned_cols=126 Identities=19% Similarity=0.352 Sum_probs=107.9
Q ss_pred cEEEEecCCCChhHHHHHHHHhcC-Chh-----HHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHH
Q 018276 217 LVENKVQGDGNCQFRSLSDQLYRS-PEH-----HMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQ 290 (358)
Q Consensus 217 L~i~~V~GDGNCLFRALS~qL~gs-qd~-----H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELq 290 (358)
+.+.+|+|||||||||||+||+++ +.+ |..||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 678889999999999999999998 666 999999999999999999 457899999999999999999999999
Q ss_pred HHHHHhCCeEEEEecCCCc---eeEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 018276 291 AAADSYGVKVFVLTSFKDT---CYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPL 346 (358)
Q Consensus 291 AaA~~y~v~I~V~ts~~~~---~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~diP~ 346 (358)
|+|++|+++|.|++..... ..+.+.+. ...++|+|+|++++|||+|++..+-+.
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~~~ 165 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET 165 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGGC-
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCCCC
Confidence 9999999999999865543 23445443 347899999988899999998765543
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.96 E-value=3.7e-29 Score=232.37 Aligned_cols=126 Identities=19% Similarity=0.352 Sum_probs=110.0
Q ss_pred cEEEEecCCCChhHHHHHHHHhcC-Chh-----HHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHH
Q 018276 217 LVENKVQGDGNCQFRSLSDQLYRS-PEH-----HMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQ 290 (358)
Q Consensus 217 L~i~~V~GDGNCLFRALS~qL~gs-qd~-----H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELq 290 (358)
+.+.+|+|||||||||||+||+++ +.+ |..||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 778899999999999999999998 666 999999999999999999 457899999999999999999999999
Q ss_pred HHHHHhCCeEEEEecCCC--c-eeEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 018276 291 AAADSYGVKVFVLTSFKD--T-CYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPL 346 (358)
Q Consensus 291 AaA~~y~v~I~V~ts~~~--~-~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~diP~ 346 (358)
|+|++|+++|.|++.... . ..+.+.+. ...++|+|+|++++|||+|++..+.+.
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~ 165 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET 165 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCC
Confidence 999999999999976654 2 23455553 346899999998899999999876543
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.85 E-value=6.4e-21 Score=178.11 Aligned_cols=95 Identities=14% Similarity=0.331 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhChhHHhhhcCc--cHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCCceeEE--EcCCCC
Q 018276 245 MFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIE--ILPHVP 319 (358)
Q Consensus 245 ~~VR~~vV~yL~~n~d~f~~fV~~--~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~--i~P~~~ 319 (358)
..+|..+..||++|++.|.+|+++ ++++||+ .+...++|||+++|+|||++++++|.|+...+....+. .+|.
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~-- 210 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE-- 210 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence 458999999999999999999974 8999999 89999999999999999999999999998765431111 2232
Q ss_pred CCCCeEEEEecCCCcceeeecCC
Q 018276 320 KSKRVIFLSFWAEVHYNSIYPEG 342 (358)
Q Consensus 320 ~~~~~I~Lsy~~~~HYdSV~p~~ 342 (358)
...+.|+|+|.. +|||+|+|.+
T Consensus 211 ~~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 211 AATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp CSSCSEEEEEET-TEEEEEEECC
T ss_pred CCCCeEEEEECC-CCceecccCC
Confidence 346789999974 6999999864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.81 E-value=5.3e-19 Score=164.97 Aligned_cols=93 Identities=17% Similarity=0.345 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhChhHHhhhcCc--cHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCCc---eeEEEcCCC
Q 018276 245 MFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDT---CYIEILPHV 318 (358)
Q Consensus 245 ~~VR~~vV~yL~~n~d~f~~fV~~--~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~---~~I~i~P~~ 318 (358)
..+|..++.||++|++.|.+|+++ ++++||+ .+...++|||+++|+|||++|+++|.|+...+.. .....+|.
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~- 214 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE- 214 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence 378999999999999999999975 8999997 6999999999999999999999999999876542 12223443
Q ss_pred CCCCCeEEEEecCCCcceeeec
Q 018276 319 PKSKRVIFLSFWAEVHYNSIYP 340 (358)
Q Consensus 319 ~~~~~~I~Lsy~~~~HYdSV~p 340 (358)
...+.|+|+|.. +|||+|||
T Consensus 215 -~~~p~I~LlY~p-gHYdiLy~ 234 (234)
T 2zfy_A 215 -GSEPKVYLLYRP-GHYDILYK 234 (234)
T ss_dssp -TCCCSEEEEEET-TEEEEEEC
T ss_pred -CCCCeEEEEECC-CCcccCCC
Confidence 345789999975 69999996
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.77 E-value=3.4e-18 Score=164.08 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhChhHHhhhcC--ccHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCCc----eeEE-Ec
Q 018276 244 HMFVRQQVVNQLKAHPEIYEGYVP--MAYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDT----CYIE-IL 315 (358)
Q Consensus 244 H~~VR~~vV~yL~~n~d~f~~fV~--~~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~----~~I~-i~ 315 (358)
-..||..+..||+.|++.|.+|+. +++++||+ +|...++||||++|+|||++|+++|.|+...+.. .... +
T Consensus 170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f- 248 (284)
T 4dhi_B 170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI- 248 (284)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-
T ss_pred HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-
Confidence 347899999999999999999996 48999999 8999999999999999999999999998765421 1223 4
Q ss_pred CCCCC-CCCeEEEEecCCCcceeeecCCCCCCCc
Q 018276 316 PHVPK-SKRVIFLSFWAEVHYNSIYPEGELPLLD 348 (358)
Q Consensus 316 P~~~~-~~~~I~Lsy~~~~HYdSV~p~~diP~~~ 348 (358)
|.... ..+.|+|.| .+.|||.|||....|.++
T Consensus 249 p~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~~~ 281 (284)
T 4dhi_B 249 PSDDQQIAPEITLLY-RPGHYDVIYKKDSTEASE 281 (284)
T ss_dssp SCCCSCCCCSEEEEE-ETTEEEEEEECC------
T ss_pred CCCCCCCCCEEEEee-cCCCccccccCCCCchhh
Confidence 75432 347799998 579999999998776654
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.72 E-value=1.3e-17 Score=166.12 Aligned_cols=94 Identities=18% Similarity=0.344 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhChhHHhhhcCc--cHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCC---ceeEEEcCC
Q 018276 244 HMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKD---TCYIEILPH 317 (358)
Q Consensus 244 H~~VR~~vV~yL~~n~d~f~~fV~~--~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~---~~~I~i~P~ 317 (358)
...+|..+..||+.|++.|.+|+++ ++++||+ .|...++||||++|+|||+.|+++|.|+...+. ......+|.
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~ 379 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE 379 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence 4568999999999999999999974 7999999 899999999999999999999999999865542 111123453
Q ss_pred CCCCCCeEEEEecCCCcceeeec
Q 018276 318 VPKSKRVIFLSFWAEVHYNSIYP 340 (358)
Q Consensus 318 ~~~~~~~I~Lsy~~~~HYdSV~p 340 (358)
...+.|+|.| .+.|||.|||
T Consensus 380 --~~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 --GSEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp --TCCCCCEEEE-ETBEEEEEEC
T ss_pred --CCCCEEEEEE-cCCccccCCC
Confidence 3467899998 6789999996
No 9
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.49 E-value=1.2e-06 Score=87.76 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=93.3
Q ss_pred CcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHH-hh---------------hc--C----ccHHHH
Q 018276 216 DLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIY-EG---------------YV--P----MAYSDY 273 (358)
Q Consensus 216 GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f-~~---------------fV--~----~~~~eY 273 (358)
-|......||||||-+|+|..++|-+|....||+.+.+-|++....| .. |. + .+|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999998754433 11 11 1 245555
Q ss_pred HHhhccCCccCchHHHHHHHHHhCCeEEEEecCCCcee-------E----EEcCCCC----CCCCeEEEEecCCCcceee
Q 018276 274 LKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCY-------I----EILPHVP----KSKRVIFLSFWAEVHYNSI 338 (358)
Q Consensus 274 l~kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~-------I----~i~P~~~----~~~~~I~Lsy~~~~HYdSV 338 (358)
++.-+.+|.=--++-+.++|+++++||+|+...--..+ + .+.|-.. -.+.||.|+|.+ .||.+|
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHFsaL 346 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSAL 346 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEEEEE
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cceeee
Confidence 55556677656678899999999999999974221100 1 1344322 235799999975 799999
Q ss_pred ecCCCC
Q 018276 339 YPEGEL 344 (358)
Q Consensus 339 ~p~~di 344 (358)
++..+-
T Consensus 347 V~~~~~ 352 (454)
T 3zrh_A 347 VAMEND 352 (454)
T ss_dssp EEBCCC
T ss_pred eecccc
Confidence 987653
No 10
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.46 E-value=9.2e-07 Score=87.39 Aligned_cols=127 Identities=17% Similarity=0.327 Sum_probs=87.6
Q ss_pred CcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChh-HH-hh----------hc-----------CccHHH
Q 018276 216 DLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPE-IY-EG----------YV-----------PMAYSD 272 (358)
Q Consensus 216 GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d-~f-~~----------fV-----------~~~~~e 272 (358)
-|....+.||||||.+|+|..++|-.|....+|+.+.+-|+.... .| .. |. ..+|+.
T Consensus 111 rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~ 190 (390)
T 3dkb_A 111 KLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDN 190 (390)
T ss_dssp CEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHH
T ss_pred ceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHH
Confidence 367788999999999999999999999999999999999987642 22 11 21 124555
Q ss_pred HHHhhccC------Cc-c--CchHHHHHHHHHhCCeEEEEecC--CC---c-ee--E----EEcCC----CCCCCCeEEE
Q 018276 273 YLKKMNKS------GE-W--GDHVTLQAAADSYGVKVFVLTSF--KD---T-CY--I----EILPH----VPKSKRVIFL 327 (358)
Q Consensus 273 Yl~kM~k~------gt-W--Gg~iELqAaA~~y~v~I~V~ts~--~~---~-~~--I----~i~P~----~~~~~~~I~L 327 (358)
-++.-+.. |. . --++-+.++|++++|||+|+... ++ . .+ + .+.|- ..-.+.||.|
T Consensus 191 Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~L 270 (390)
T 3dkb_A 191 LIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVL 270 (390)
T ss_dssp HHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEE
T ss_pred HHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEE
Confidence 45433322 11 1 24677899999999999999532 11 1 11 1 13342 2234679999
Q ss_pred EecCCCcceeeecCCC
Q 018276 328 SFWAEVHYNSIYPEGE 343 (358)
Q Consensus 328 sy~~~~HYdSV~p~~d 343 (358)
+|.+ +||.+|++..+
T Consensus 271 gY~s-~HFsaLV~me~ 285 (390)
T 3dkb_A 271 GYDS-HHFVPLVTLKD 285 (390)
T ss_dssp EECS-SCEEEEEEBCS
T ss_pred Eecc-Cceeeeeeccc
Confidence 9965 89999998764
No 11
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=26.64 E-value=85 Score=27.38 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcC------c----cHHHHHH
Q 018276 206 QRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP------M----AYSDYLK 275 (358)
Q Consensus 206 qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~------~----~~~eYl~ 275 (358)
+-+.-+|.+.|+.-.+-+ ..=-.++.+-.-...+.-+..||...-+..++++..|..++. . .|..=++
T Consensus 20 ~yi~~kL~q~g~~~~~~~--~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~~~L~it~~~a~~~F~~Va~ 97 (169)
T 4aq3_A 20 KYIHYKLSQRGYEWDAGD--DVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMSSQLHLTPFTARGRFATVVE 97 (169)
T ss_dssp HHHHHHHHHTTCCCC---------------------CHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCccc--ccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 456678888887643211 110112222222345567899999999999999999987642 1 3333344
Q ss_pred hhccCC-ccCchHHHHHHHHHh
Q 018276 276 KMNKSG-EWGDHVTLQAAADSY 296 (358)
Q Consensus 276 kM~k~g-tWGg~iELqAaA~~y 296 (358)
+|-.+| .||--+.|.++|-.+
T Consensus 98 elF~dGiNWGRIVaLfaF~g~L 119 (169)
T 4aq3_A 98 ELFRDGVNWGRIVAFFEFGGVM 119 (169)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHH
Confidence 555555 599999999877554
No 12
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=22.19 E-value=87 Score=26.59 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHhhChhHHhhhcC-------cc---HHHHHHhhccCC--ccCchHHHHHHHHHh
Q 018276 242 EHHMFVRQQVVNQLKAHPEIYEGYVP-------MA---YSDYLKKMNKSG--EWGDHVTLQAAADSY 296 (358)
Q Consensus 242 d~H~~VR~~vV~yL~~n~d~f~~fV~-------~~---~~eYl~kM~k~g--tWGg~iELqAaA~~y 296 (358)
.-+..||+..-+..++|+..|..++. .+ |..=.++|-.+| .||--+.|.|+|-.+
T Consensus 38 ~~~~~Lr~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~l 104 (157)
T 2nl9_A 38 RALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 44678888888888999999887642 22 444455777788 499999999888665
No 13
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=20.73 E-value=21 Score=30.28 Aligned_cols=18 Identities=17% Similarity=-0.237 Sum_probs=12.6
Q ss_pred HHHHHhhCCcEEEEecCC
Q 018276 208 MLDRLQLYDLVENKVQGD 225 (358)
Q Consensus 208 L~~rL~~~GL~i~~V~GD 225 (358)
..++|+..|..+.-+.|=
T Consensus 32 al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 32 TLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp HHHHHHHTTCEEEECCSC
T ss_pred HHHHHHHCCCEEEEEeCC
Confidence 346788889887666653
No 14
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=20.26 E-value=1e+02 Score=26.50 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHhhChhHHhhhcC-------c---cHHHHHHhhccCC--ccCchHHHHHHHHHhC
Q 018276 243 HHMFVRQQVVNQLKAHPEIYEGYVP-------M---AYSDYLKKMNKSG--EWGDHVTLQAAADSYG 297 (358)
Q Consensus 243 ~H~~VR~~vV~yL~~n~d~f~~fV~-------~---~~~eYl~kM~k~g--tWGg~iELqAaA~~y~ 297 (358)
-+..||...-+..++++..|..++. . .|..=+++|-++| .||--+.|.|++-.+-
T Consensus 39 ~~~~Lr~vgdele~~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la 105 (157)
T 4hw4_A 39 ALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 105 (157)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 3567777777788888888876542 1 2333344666676 7999999988776553
Done!