Query 018277
Match_columns 358
No_of_seqs 290 out of 801
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gnf_A Transcription factor GA 99.6 1.8E-16 6.3E-21 114.6 4.4 43 222-267 4-46 (46)
2 3dfx_A Trans-acting T-cell-spe 99.6 2.4E-16 8.4E-21 120.8 4.8 53 222-277 7-59 (63)
3 2vut_I AREA, nitrogen regulato 99.6 1.9E-16 6.6E-21 113.0 3.7 41 223-266 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.6 5.4E-16 1.9E-20 119.8 4.7 51 222-275 9-59 (66)
5 2kae_A GATA-type transcription 99.5 1.7E-14 5.7E-19 113.0 2.6 46 222-269 8-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 1.7E-13 5.7E-18 115.9 4.5 52 223-277 60-111 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 6.4E-12 2.2E-16 106.2 5.1 46 222-270 5-50 (115)
8 3ogl_Q JAZ1 incomplete degron 95.9 0.0043 1.5E-07 37.9 2.3 18 151-168 4-21 (21)
9 3ogk_Q JAZ1 incomplete degron 95.9 0.0022 7.6E-08 39.6 1.0 19 153-171 1-19 (22)
10 2pk2_A Cyclin-T1, protein TAT; 48.8 3.7 0.00012 39.9 0.0 9 222-230 314-322 (358)
11 1dl6_A Transcription factor II 39.2 9.6 0.00033 27.9 1.0 32 223-259 12-43 (58)
12 1pft_A TFIIB, PFTFIIBN; N-term 38.9 4.1 0.00014 28.4 -1.0 32 223-259 6-37 (50)
13 2j9u_B VPS36, vacuolar protein 38.9 6 0.00021 31.1 -0.2 34 221-255 16-49 (76)
14 2yrk_A Zinc finger homeobox pr 31.8 3.8 0.00013 30.4 -2.2 7 224-230 15-21 (55)
15 3cw2_K Translation initiation 29.4 19 0.00065 30.9 1.4 30 223-255 104-133 (139)
16 2ctu_A Zinc finger protein 483 28.3 18 0.00063 24.7 1.0 40 222-264 18-57 (73)
17 3cng_A Nudix hydrolase; struct 26.6 20 0.00067 30.5 1.0 31 222-254 3-33 (189)
18 2ds5_A CLPX, ATP-dependent CLP 25.8 34 0.0012 24.7 2.0 31 223-255 12-42 (51)
19 1w7p_D VPS36P, YLR417W; ESCRT- 25.2 15 0.00051 38.3 0.0 38 219-257 114-151 (566)
20 1ovx_A ATP-dependent CLP prote 25.2 34 0.0012 26.2 2.0 32 223-256 19-50 (67)
21 1nee_A EIF-2-beta, probable tr 24.5 20 0.00068 30.8 0.6 29 223-254 103-131 (138)
22 2owa_A Arfgap-like finger doma 24.5 51 0.0017 28.2 3.2 36 222-261 36-71 (138)
23 2d74_B Translation initiation 24.0 22 0.00075 30.9 0.8 30 223-255 105-134 (148)
24 2yrc_A Protein transport prote 22.3 24 0.00081 26.1 0.6 32 222-255 9-42 (59)
25 2lvu_A Zinc finger and BTB dom 27.5 19 0.00065 19.7 0.0 17 247-263 3-19 (26)
26 2iqj_A Stromal membrane-associ 21.8 58 0.002 27.6 3.0 36 222-261 27-62 (134)
27 2crw_A ARF GAP 3, ADP-ribosyla 21.4 59 0.002 28.2 3.0 37 222-262 29-65 (149)
28 2crr_A Stromal membrane-associ 21.4 60 0.002 27.8 3.0 36 222-261 29-64 (141)
29 1k81_A EIF-2-beta, probable tr 20.1 15 0.00051 24.5 -0.8 28 224-255 2-30 (36)
No 1
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.62 E-value=1.8e-16 Score=114.55 Aligned_cols=43 Identities=44% Similarity=0.852 Sum_probs=39.5
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSK 267 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~sk 267 (358)
...|++|+++ .||+||+||.|+ +|||||||+|++++++||++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 3579999995 699999999996 999999999999999999875
No 2
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.62 E-value=2.4e-16 Score=120.78 Aligned_cols=53 Identities=26% Similarity=0.531 Sum_probs=45.8
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCccCCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQL 277 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~sk~~~~~~~~~~ 277 (358)
...|++|+++ .||+||+||+|+ +|||||||+|++++..|+++..+..+.....
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~R 59 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNR 59 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC-
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccC
Confidence 4679999995 699999999997 9999999999999999999887766655443
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.62 E-value=1.9e-16 Score=112.95 Aligned_cols=41 Identities=46% Similarity=0.907 Sum_probs=38.1
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 266 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~s 266 (358)
..|++|+++ .||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 479999995 699999999997 99999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.59 E-value=5.4e-16 Score=119.81 Aligned_cols=51 Identities=37% Similarity=0.689 Sum_probs=44.8
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCccC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMD 275 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~sk~~~~~~~~ 275 (358)
...|++|+++ .||+||+||.|. +|||||||+|++++++|++++....|...
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R 59 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKR 59 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccc
Confidence 4689999995 699999999996 99999999999999999999877655443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.45 E-value=1.7e-14 Score=112.99 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=38.8
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGG 269 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~sk~~ 269 (358)
...|+||+++ .||+||+||.+..+|||||||+|+++++.|+++...
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 4689999995 699999955444499999999999999999986643
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.39 E-value=1.7e-13 Score=115.95 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=45.5
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCccCCC
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQL 277 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~sk~~~~~~~~~~ 277 (358)
..|++|+++ .||+||+||+| ++|||||||||++++..|+++..+..|.....
T Consensus 60 ~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r 111 (115)
T 4hc9_A 60 TSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNR 111 (115)
T ss_dssp CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC-
T ss_pred ccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccc
Confidence 579999995 69999999999 89999999999999999999988776654443
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.23 E-value=6.4e-12 Score=106.24 Aligned_cols=46 Identities=46% Similarity=0.806 Sum_probs=40.6
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGR 270 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~~sk~~~ 270 (358)
.+.|.+|+++ .||+||+||.| .+|||||||+|++++..|++.+.++
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKK 50 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKR 50 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCC
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccc
Confidence 4689999994 69999999999 7999999999999999999876544
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.93 E-value=0.0043 Score=37.91 Aligned_cols=18 Identities=61% Similarity=0.706 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhhhccc.....
Q 018277 151 SRRIASLVRFREKRKERC..... 168 (358)
Q Consensus 151 s~R~AsL~RfREKRKeR~..... 168 (358)
..|.+||.||.||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 579999999999999973
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=95.89 E-value=0.0022 Score=39.64 Aligned_cols=19 Identities=63% Similarity=0.737 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhcccccc
Q 018277 153 RIASLVRFREKRKERCFDK 171 (358)
Q Consensus 153 R~AsL~RfREKRKeR~~~K 171 (358)
|.+||.||.||||+|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999987664
No 10
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=48.78 E-value=3.7 Score=39.87 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=0.0
Q ss_pred ccccccccc
Q 018277 222 VRRCQHCGV 230 (358)
Q Consensus 222 ~~~C~~Cg~ 230 (358)
.|.|.||-.
T Consensus 314 ~~~~~~~~~ 322 (358)
T 2pk2_A 314 ARPNYHCQL 322 (358)
T ss_dssp ---------
T ss_pred CccceecHH
Confidence 577888865
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=39.24 E-value=9.6 Score=27.88 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=23.8
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (358)
..|..|+. ++...+.-.| ...|..||+-+..+
T Consensus 12 ~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 12 VTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 47999987 3466665556 79999999988654
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=38.93 E-value=4.1 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.585 Sum_probs=20.9
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (358)
..|..|+. +++..+--.| ...|..||+.|..+
T Consensus 6 ~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 6 KVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred EeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 46888876 3444443334 78899998877543
No 13
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=38.88 E-value=6 Score=31.14 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=26.0
Q ss_pred ccccccccccCCCCccccccCCCCCcccchHHHHH
Q 018277 221 VVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (358)
Q Consensus 221 ~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (358)
..|.|..|... .-+|.+.+--..+..-|-+||+.
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 47999999976 46777765544667889999974
No 14
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=31.84 E-value=3.8 Score=30.41 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=3.8
Q ss_pred ccccccc
Q 018277 224 RCQHCGV 230 (358)
Q Consensus 224 ~C~~Cg~ 230 (358)
.|..|++
T Consensus 15 eC~lC~v 21 (55)
T 2yrk_A 15 ECTLCGV 21 (55)
T ss_dssp CCTTTTC
T ss_pred cccccCc
Confidence 4555555
No 15
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=29.38 E-value=19 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=19.3
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (358)
..|..|+-++ |-+-+++-. --.-|+|||-.
T Consensus 104 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKKS-WYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCST-TTSSCCC----
T ss_pred eECCCCCCcC--cEEEEeCCe-EEEEecCCCCC
Confidence 5799999975 777776522 24789999964
No 16
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.28 E-value=18 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=27.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRD 264 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~r~ 264 (358)
+..|..|+..-.....++. .....|..||..|..+..++.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 5689999865323333344 446899999999887765543
No 17
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=26.64 E-value=20 Score=30.51 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=23.7
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHH
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (358)
.+.|..||.. .+...-+|..+.+..|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 3589999984 455556677777889999994
No 18
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=25.83 E-value=34 Score=24.65 Aligned_cols=31 Identities=26% Similarity=0.674 Sum_probs=21.0
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (358)
.+|+-||.+...+...=.|| | ...|+.|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 57999998654444444455 2 4899999654
No 19
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=25.22 E-value=15 Score=38.29 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCccccccCCCCCcccchHHHHHHH
Q 018277 219 ETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (358)
Q Consensus 219 e~~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (358)
....|.|..|.++ .-+|...+--..+..-|-+||+.-.
T Consensus 114 ~~~tWvC~ICsfs-N~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 114 VVSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp ---------------------------------------
T ss_pred cccceeccccccC-CCCCCCCCcccCCCCcccccCCCCc
Confidence 3458999999986 4566655433355678999999753
No 20
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=25.20 E-value=34 Score=26.17 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=21.7
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (358)
.+|+-||.+...+...=.|| | ...|+.|=...
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 57999998644344444465 2 58999997544
No 21
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=24.50 E-value=20 Score=30.78 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=21.3
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHH
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (358)
..|..|+-++ |-+-+++-. --.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGRI-SLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETTT-TEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCCe-EEEEccCCCC
Confidence 4699999975 777776522 2478999985
No 22
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=24.47 E-value=51 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.3
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (358)
...|..|+.. -|.|=.-..| ..+|-.|.-..+.-|.
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 4689999985 6999998889 7899999988876654
No 23
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.00 E-value=22 Score=30.91 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=21.6
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 018277 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (358)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (358)
..|..|+-+. |-+-+++- ---.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~r-~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRDR-FHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSSS-SBCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeCC-EEEEEecCCCCC
Confidence 4799999975 77777652 224789999854
No 24
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.28 E-value=24 Score=26.09 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.2
Q ss_pred cccccc--cccCCCCccccccCCCCCcccchHHHHH
Q 018277 222 VRRCQH--CGVSENNTPAMRRGPAGPRTLCNACGLM 255 (358)
Q Consensus 222 ~~~C~~--Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (358)
+.+|.. |++ -.-|.|+-...|.+..||-|+..
T Consensus 9 pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCe--EECCceEEECCCCEEEcccCCCc
Confidence 568998 998 46899999888889999999854
No 25
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.54 E-value=19 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.3
Q ss_pred ccchHHHHHHHhcCCCC
Q 018277 247 TLCNACGLMWANKGTLR 263 (358)
Q Consensus 247 ~LCNACGl~~~~~~~~r 263 (358)
..|..||..|.....++
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46888998887765543
No 26
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=21.83 E-value=58 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=30.6
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (358)
...|..|+.. -|.|=.-..| ..+|-.|.-..+.-|.
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 4689999985 6999998888 7899999988887664
No 27
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=59 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~ 262 (358)
...|..|+.. -|.|=.-..| ..+|-.|--..+.-|.+
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 4689999984 7999998888 78999999888876653
No 28
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.39 E-value=60 Score=27.76 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=30.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 018277 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (358)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (358)
...|..|+.. -|.|=.-..| ..||-.|.-..+.-|.
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 4689999984 6999888888 7899999888887664
No 29
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.07 E-value=15 Score=24.55 Aligned_cols=28 Identities=32% Similarity=0.792 Sum_probs=18.8
Q ss_pred cccccccCCCCccccccCCCCC-cccchHHHHH
Q 018277 224 RCQHCGVSENNTPAMRRGPAGP-RTLCNACGLM 255 (358)
Q Consensus 224 ~C~~Cg~~~~~TP~WR~GP~G~-~~LCNACGl~ 255 (358)
.|..|+-++ |-+-++. +. -.-|+|||-.
T Consensus 2 lC~~C~~pe--T~l~~~~--~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPD--TKIIKEG--RVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCE--EEEEEET--TEEEEEEETTTEE
T ss_pred CCcCCCCCC--cEEEEeC--CcEEEEhhcCCCc
Confidence 488898875 6666654 22 2459999964
Done!