BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018278
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/319 (68%), Positives = 250/319 (78%), Gaps = 2/319 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES GGWYN L + D++ AGITHVWLPP SQSVA QGYMPGRLYDLDA
Sbjct: 2 VLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDA 61
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG++A LKSLI A KG+K +AD+VINHRTAE KDGRGIYCIFEGGT D RLDWGP
Sbjct: 62 SKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPH 121
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D+ Y+DG GN DTG DF APDIDHLN RVQKEL +W+NWLK +IGFDGWRFDF
Sbjct: 122 MICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFA 181
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA--V 262
KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ NQD HR L +WV GG
Sbjct: 182 KGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVGGKGPA 241
Query: 263 AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
FDFTTKGIL AV+GELWRL+ ++GK PG IG P AVTF+DNHDTGSTQ +WPFPS
Sbjct: 242 TTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHMWPFPS 301
Query: 323 DKVMLGYAYILTHPGTPCI 341
D+VM GYAYILTHPGTPCI
Sbjct: 302 DRVMQGYAYILTHPGTPCI 320
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 250/320 (78%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GGA +A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 265 ---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 250/320 (78%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GGA +A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 265 ---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 250/320 (78%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GGA +A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 265 ---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 250/320 (78%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GGA +A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 265 ---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/320 (65%), Positives = 249/320 (77%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR F
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLAFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GGA +A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 265 ---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/320 (65%), Positives = 249/320 (77%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGI CIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GGA +A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 265 ---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 153/365 (41%), Gaps = 91/365 (24%)
Query: 15 AIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---P 71
A +L ++ Q F W+ G W++ +++ IP+ AGI+ +WLPPPS+ ++
Sbjct: 1 AKYLELEEGGVIMQAFYWDVPG-GGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYS 59
Query: 72 QGYMPGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA---ER 120
GY P +DL +++GS+ +L LIQ GIK +AD+VINHR E
Sbjct: 60 MGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEW 119
Query: 121 KDGRGIYC------IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDH 174
G Y + G + + LD+ P+ + D+ F PDI H
Sbjct: 120 NPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDE------------GTFGGFPDICH 167
Query: 175 LNPRVQKELSDWMNWLKTE--------IGFDGWRFDFVKGYAPSITKVYMENTSPDFAVG 226
KE + W E IGFDGWRFD+VKGY + + ++ N +AVG
Sbjct: 168 -----HKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWL-NWWGGWAVG 221
Query: 227 EKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKD 286
E WD+ N D AL W +G V FDF + A
Sbjct: 222 EYWDT-----------NVD----ALLSWAYESGAKV--FDFPLYYKMDEAFD-------- 256
Query: 287 SNGKPPGFIGIL----------PQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHP 336
N P + L P AVTF+ NHDT +P YA+ILT+
Sbjct: 257 -NNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYP--------AYAFILTYE 307
Query: 337 GTPCI 341
G P I
Sbjct: 308 GQPVI 312
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 155/356 (43%), Gaps = 69/356 (19%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRG 125
Y +D + + +YGS A L+ A G+K L D+V NH D G+G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 126 IY---CIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182
+ C G +D D G FI G D D++ +P+V
Sbjct: 135 FWRNDCADPGNYPNDCDD-GDRFI-----------GGD---------ADLNTGHPQVYGM 173
Query: 183 LSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD 241
D L+++ G G+RFDFV+GYAP +M +++ + F VGE W GP P+
Sbjct: 174 FRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPN 229
Query: 242 ---ANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGI 297
N + +KDW A V FDF K +Q + W+ NG P P + +
Sbjct: 230 WDWRNTASWQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV 285
Query: 298 LPQNAVTFIDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
AVTF+DNHDTG + Q W + YAYILT PGTP + Y
Sbjct: 286 ----AVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 155/348 (44%), Gaps = 53/348 (15%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG 132
Y +D + + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 133 GTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+D D G P+ GD+ + G + +TG +P+V D L
Sbjct: 135 FWRNDCADPGNYPNDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNL 181
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDG 246
+++ G G+RFDFV+GYAP +M +++ + F VGE W GP P+ N
Sbjct: 182 RSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTAS 237
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTF 305
+ +KDW A V FDF K +Q + W+ NG P P + + AVTF
Sbjct: 238 WQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTF 289
Query: 306 IDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
+DNHDTG + Q W + YAYILT PGTP + Y
Sbjct: 290 VDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 155/348 (44%), Gaps = 53/348 (15%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG 132
Y +D + + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 133 GTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+D D G P+ GD+ + G + +TG +P+V D L
Sbjct: 135 FWRNDCADPGNYPNDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNL 181
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDG 246
+++ G G+RFDFV+GYAP +M +++ + F VG+ W GP P+ N
Sbjct: 182 RSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGQLWK----GPSEYPNWDWRNTAS 237
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTF 305
+ +KDW A V FDF K +Q + W+ NG P P + + AVTF
Sbjct: 238 WQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTF 289
Query: 306 IDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
+DNHDTG + Q W + YAYILT PGTP + Y
Sbjct: 290 VDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 155/348 (44%), Gaps = 53/348 (15%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG 132
Y +D + + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 133 GTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+D D G P+ GD+ + G + +TG +P+V D L
Sbjct: 135 FWRNDCADPGNYPNDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNL 181
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDG 246
+++ G G+RF+FV+GYAP +M +++ + F VGE W GP P+ N
Sbjct: 182 RSQYGAGGFRFNFVRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTAS 237
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTF 305
+ +KDW A V FDF K +Q + W+ NG P P + + AVTF
Sbjct: 238 WQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTF 289
Query: 306 IDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
+DNHDTG + Q W + YAYILT PGTP + Y
Sbjct: 290 VDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 155/348 (44%), Gaps = 53/348 (15%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG 132
Y +D + + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 133 GTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+D D G P+ GD+ + G + +TG +P+V D L
Sbjct: 135 FWRNDCADPGNYPNDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNL 181
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDG 246
+++ G G+RFDFV+GYAP +M +++ + F VGE W GP P+ N
Sbjct: 182 RSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTAS 237
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTF 305
+ +KDW A V FDF K +Q + W+ NG P P + + AVTF
Sbjct: 238 WQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTF 289
Query: 306 IDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
+DNH+TG + Q W + YAYILT PGTP + Y
Sbjct: 290 VDNHNTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 153/351 (43%), Gaps = 83/351 (23%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYD 81
++ Q F W+ + G W+++++ IP+ +AGI+ +W+PP S+ + GY P +D
Sbjct: 11 VIMQAFYWDVPS-GGIWWDTIRQKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYDFFD 69
Query: 82 LDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA---ERKDGRGIYC-- 128
L +++GS+ +L ++I G+K +AD+VINHR E Y
Sbjct: 70 LGEYDQKGTVETRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWT 129
Query: 129 ----IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL- 183
+ G + + LD+ P+ + GD F PDI H Q L
Sbjct: 130 DFSKVASGKYTANYLDFHPNELHAGDSG------------TFGGYPDICHDKSWDQYWLW 177
Query: 184 ---SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ +L++ IG D WRFD+VKGYAP + K ++ N +AVGE WD+
Sbjct: 178 ASQESYAAYLRS-IGIDAWRFDYVKGYAPWVVKDWL-NWWGGWAVGEYWDT--------- 226
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL-- 298
N D A+ +W ++G V FDF + A N P + L
Sbjct: 227 --NVD----AVLNWAYSSGAKV--FDFALYYKMDEAFD---------NKNIPALVSALQN 269
Query: 299 --------PQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
P AVTF+ NHDT +P YA+ILT+ G P I
Sbjct: 270 GQTVVSRDPFKAVTFVANHDTDIIWNKYP--------AYAFILTYEGQPTI 312
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 154/348 (44%), Gaps = 53/348 (15%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG 132
Y +D + + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 133 GTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+D D G P+ GD+ + G + +TG +P+V D L
Sbjct: 135 FWRNDCADPGNYPNDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNL 181
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDG 246
+++ G G+RF FV+GYAP +M +++ + F VGE W GP P+ N
Sbjct: 182 RSQYGAGGFRFGFVRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTAS 237
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTF 305
+ +KDW A V FDF K +Q + W+ NG P P + + AVTF
Sbjct: 238 WQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTF 289
Query: 306 IDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
+DNHDTG + Q W + YAYILT PGTP + Y
Sbjct: 290 VDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 154/348 (44%), Gaps = 53/348 (15%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDAS-KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG 132
Y +D + + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQG 134
Query: 133 GTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+D D G P+ GD+ + G + +TG +P+V D L
Sbjct: 135 FWRNDCADPGNYPNDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNL 181
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDG 246
+++ G G+RFDFV+GYAP +M +++ + F VG W GP P+ N
Sbjct: 182 RSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGGLWK----GPSEYPNWDWRNTAS 237
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTF 305
+ +KDW A V FDF K +Q + W+ NG P P + + AVTF
Sbjct: 238 WQQIIKDWSDRAKCPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTF 289
Query: 306 IDNHDTGST------QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTY 347
+DNHDTG + Q W + YAYILT PGTP + Y
Sbjct: 290 VDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 146/368 (39%), Gaps = 74/368 (20%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
+ Q + W N W N L + LS+AGIT +W+PP + S A GY LYDL
Sbjct: 7 MMQYYEWHLENDGQHW-NRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAE 119
+KYG++A L+ I + + I D+V+NH+ T
Sbjct: 66 EFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNR 125
Query: 120 RKDGRGIYCI-------FEG---GTSDDRLDWGPSFICRGDKEYSDGQ------------ 157
+D G Y I F G SD + W D+ Y +
Sbjct: 126 WQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWR 185
Query: 158 -GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG----YAPSIT 212
++ D+ +ID +P VQ EL DW +W E+ DG+R D +K Y
Sbjct: 186 VDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWV 245
Query: 213 KVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF-TTK 270
+ D F VGE W K D GAL+ ++ ++ FD
Sbjct: 246 RHQRNEADQDLFVVGEYW---------KDDV------GALEFYLDEMNWEMSLFDVPLNY 290
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGY 329
+A+ QG + ++ N + P +AVTF+DNHDT + L + +D L Y
Sbjct: 291 NFYRASQQGGSYDMR--NILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAY 348
Query: 330 AYILTHPG 337
A ILT G
Sbjct: 349 ATILTREG 356
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 146/368 (39%), Gaps = 74/368 (20%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
+ Q + W N W N L + LS+AGIT +W+PP + S A GY LYDL
Sbjct: 7 MMQYYEWHLENDGQHW-NRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAE 119
+KYG++A L+ I + + I D+V+NH+ T
Sbjct: 66 EFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNR 125
Query: 120 RKDGRGIYCI-------FEG---GTSDDRLDWGPSFICRGDKEYSDGQ------------ 157
+D G Y I F G SD + W D+ Y +
Sbjct: 126 WQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWR 185
Query: 158 -GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG----YAPSIT 212
++ D+ +ID +P VQ EL DW +W E+ DG+R D +K Y
Sbjct: 186 VDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWV 245
Query: 213 KVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK- 270
+ D F VGE W K D GAL+ ++ ++ FD
Sbjct: 246 RHQRNEADQDLFVVGEYW---------KDDV------GALEFYLDEMNWEMSLFDVPLHY 290
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGY 329
+A+ QG + ++ N + P +AVTF+DNHDT + L + +D L Y
Sbjct: 291 NFYRASQQGGSYDMR--NILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAY 348
Query: 330 AYILTHPG 337
A ILT G
Sbjct: 349 ATILTREG 356
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 153/385 (39%), Gaps = 80/385 (20%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLD 83
+ Q F W N W N L++ +L N GIT +W+PP + + GY LYDL
Sbjct: 9 MMQYFEWHLPNDGQHW-NRLRDDASNLRNRGITAIWIPPAWKGTSQNDVGYGAYDLYDLG 67
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAE 119
+KYG+++ L+S I A + G++ D+V+NH+
Sbjct: 68 EFNQKGTVRTKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNR 127
Query: 120 RKDGRGIYCIF---------EGGT-SD--------DRLDWGPS-------FICRGDKEYS 154
++ G Y I G T SD D +DW S + RGD +
Sbjct: 128 NQEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAW 187
Query: 155 DGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213
D + + + G D+ D+D +P V EL W W + DG+R D VK S T+
Sbjct: 188 DWEVDSENGNYDYLMYADVDMDHPEVVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFTR 247
Query: 214 VYMENT-----SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFT 268
++ + FAV E W K D GAL++++ + FD
Sbjct: 248 DWLTHVRNATGKEMFAVAEFW---------KNDL------GALENYLNKTNWNHSVFDVP 292
Query: 269 TKGILQAAVQ--GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM 326
L A G K NG + P +AVTF+DNHD+ + L F +
Sbjct: 293 LHYNLYNASNSGGNYDMAKLLNGT---VVQKHPMHAVTFVDNHDSQPGESLESFVQEWFK 349
Query: 327 -LGYAYILTHP-GTPCIVISVTYPL 349
L YA ILT G P + Y +
Sbjct: 350 PLAYALILTREQGYPSVFYGDYYGI 374
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 153/385 (39%), Gaps = 80/385 (20%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLD 83
+ Q F W N W N L++ +L N GIT +W+PP + + GY LYDL
Sbjct: 5 MMQYFEWHLPNDGQHW-NRLRDDASNLRNRGITAIWIPPAWKGTSQNDVGYGAYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAE 119
+KYG+++ L+S I A + G++ D+V+NH+
Sbjct: 64 EFNQKGTVRTKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNR 123
Query: 120 RKDGRGIYCIF---------EGGT-SD--------DRLDWGPS-------FICRGDKEYS 154
++ G Y I G T SD D +DW S + RGD +
Sbjct: 124 NQEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAW 183
Query: 155 DGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213
D + + + G D+ D+D +P V EL W W + DG+R D VK S T+
Sbjct: 184 DWEVDSENGNYDYLMYADVDMDHPEVVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFTR 243
Query: 214 VYMENT-----SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFT 268
++ + FAV E W K D GAL++++ + FD
Sbjct: 244 DWLTHVRNATGKEMFAVAEFW---------KNDL------GALENYLNKTNWNHSVFDVP 288
Query: 269 TKGILQAAVQ--GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM 326
L A G K NG + P +AVTF+DNHD+ + L F +
Sbjct: 289 LHYNLYNASNSGGNYDMAKLLNGT---VVQKHPMHAVTFVDNHDSQPGESLESFVQEWFK 345
Query: 327 -LGYAYILTHP-GTPCIVISVTYPL 349
L YA ILT G P + Y +
Sbjct: 346 PLAYALILTREQGYPSVFYGDYYGI 370
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 156/389 (40%), Gaps = 93/389 (23%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
L Q F W + N W L+N LS+ GIT VW+PP + S + GY P LYDL
Sbjct: 5 LMQYFEWYTPNDGQHW-KRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR------------------- 116
+KYG++++L+ I + + ++ D+V+NH+
Sbjct: 64 EFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANR 123
Query: 117 ---TAE----------RKDGRG--------IYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
T+E R GRG + F+G D+ F RG+ + D
Sbjct: 124 NQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWD 183
Query: 156 GQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ + + G D+ D+D+ +P V E W W E+ DG+R D K S +
Sbjct: 184 WEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRD 243
Query: 215 YMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
+++ F V E W + + G L++++ + FD
Sbjct: 244 WVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFNQSVFDVPL 288
Query: 270 KGILQAA-VQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWP 319
LQAA QG ++ RL D + P+ AVTF++NHDT ST + W
Sbjct: 289 HFNLQAASSQGGGYDMRRLLDGT-----VVSRHPEKAVTFVENHDTQPGQSLESTVQTWF 343
Query: 320 FPSDKVMLGYAYILTHP-GTPCIVISVTY 347
P L YA+ILT G P + Y
Sbjct: 344 KP-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 155/387 (40%), Gaps = 89/387 (22%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
L Q F W + N W L+N LS+ GIT VW+PP + S + GY P LYDL
Sbjct: 5 LMQYFEWYTPNDGQHW-KRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR------------------- 116
+KYG++++L+ I + + ++ D+V+NH+
Sbjct: 64 EFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANR 123
Query: 117 ---TAE----------RKDGRG--------IYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
T+E R GRG + F+G D+ F RG+ + D
Sbjct: 124 NQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWD 183
Query: 156 GQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ + + G D+ D+D+ +P V E W W E+ DG+R D K S +
Sbjct: 184 WEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRD 243
Query: 215 YMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
+++ F V E W + + G L++++ + FD
Sbjct: 244 WVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFNQSVFDVPL 288
Query: 270 KGILQAA-VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWPFP 321
LQAA QG + ++ NG + P +VTF+DNHDT ST + W P
Sbjct: 289 HFNLQAASSQGGGYDMRKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKP 345
Query: 322 SDKVMLGYAYILTHP-GTPCIVISVTY 347
L YA+ILT G P + Y
Sbjct: 346 -----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 156/389 (40%), Gaps = 80/389 (20%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRL 79
+ + Q F W N W N L + +L + GIT VW+PP + + GY L
Sbjct: 5 TNGTMMQYFEWYLPNDGNHW-NRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDL 63
Query: 80 YDLDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR--------------- 116
YDL +KYG+++ L++ + + + GI+ D+V+NH+
Sbjct: 64 YDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVN 123
Query: 117 -TAERKDGRGIYCIF---------EGGTSD---------DRLDWGPS-------FICRGD 150
++ G Y I G T D +DW S + RG
Sbjct: 124 PNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGH 183
Query: 151 KEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209
+ D + + + G D+ DID +P V EL +W W +G DG+R D VK
Sbjct: 184 GKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKY 243
Query: 210 SITKVYMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
S T+ ++ + FAV E W K D GA+++++Q +
Sbjct: 244 SFTRDWINHVRSATGKNMFAVAEFW---------KNDL------GAIENYLQKTNWNHSV 288
Query: 265 FDFTTK-GILQAAVQGELWRLKDS-NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
FD + A+ G + +++ NG + P +AVTF+DNHD+ + L F
Sbjct: 289 FDVPLHYNLYNASKSGGNYDMRNIFNGT---VVQRHPSHAVTFVDNHDSQPEEALESFVE 345
Query: 323 DKVM-LGYAYILTHP-GTPCIVISVTYPL 349
+ L YA LT G P + Y +
Sbjct: 346 EWFKPLAYALTLTREQGYPSVFYGDYYGI 374
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 146/376 (38%), Gaps = 80/376 (21%)
Query: 26 LFQGFNWESSN--------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGY 74
+ Q F WE + + +N L P+L+ AG T VWLPP ++ +A GY
Sbjct: 125 ILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGY 184
Query: 75 MPGRLYDLDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------- 116
L+DL +KYG++ +L++ I A IK D V+NHR
Sbjct: 185 GTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVL 244
Query: 117 ---TAERKDGR--------------GIYCIFE-GGTSDDRLDWGPSFICRGDKEYSDGQG 158
+ K G+ G Y F G D DW + K D +
Sbjct: 245 LDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDW-DDYSKESGKYLFDEKS 303
Query: 159 NDDT---GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 215
D T ED+ D+D+ N VQ ++ DW W+ I FDG+R D VK +
Sbjct: 304 WDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKW 363
Query: 216 M---ENTSPD--FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG-AVAAFDFTT 269
M +N+S F VGE W D + LK ++ G + FDF
Sbjct: 364 MSAVQNSSNRDVFFVGEAW---------VEDVDD------LKGFLDTVGNPDLRVFDFPL 408
Query: 270 KGILQAAVQGELWRLKDSNG--KPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SDKVM 326
+ + G + G PG+ AVTF+DNHDT + + +
Sbjct: 409 RSFFVDMLNGAYMADLRNAGLVNSPGY----ENRAVTFVDNHDTDRDEGSYTVSIYSRKY 464
Query: 327 LGYAYILTH-PGTPCI 341
YAYILT G P +
Sbjct: 465 QAYAYILTRAEGVPTV 480
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 151/391 (38%), Gaps = 99/391 (25%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
L Q F W N W L+N L+ GIT VW+PP + S A GY LYDL
Sbjct: 7 LMQYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAERKD---- 122
+KYG++ +L+S I++ + I D+VINH+ TA D
Sbjct: 66 EFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADR 125
Query: 123 -------------------GRGI--------YCIFEGGTSDDRLDWGPSFICRG---DKE 152
GRG + F+G D+ + +G D E
Sbjct: 126 NRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWE 185
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
S+ GN D+ DID+ +P V E+ W W E+ DG+R D VK S
Sbjct: 186 VSNENGN----YDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFL 241
Query: 213 KVYMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ ++ + F V E W + GAL++++ + FD
Sbjct: 242 RDWVNHVREKTGKEMFTVAEYWQN---------------DLGALENYLNKTNFNHSVFDV 286
Query: 268 TTKGILQAA-VQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG------STQRL 317
AA QG ++ +L +S + P AVTF+DNHDT ST +
Sbjct: 287 PLHYQFHAASTQGGGYDMRKLLNST-----VVSKHPLKAVTFVDNHDTQPGQSLESTVQT 341
Query: 318 WPFPSDKVMLGYAYILTHP-GTPCIVISVTY 347
W P L YA+ILT G P + Y
Sbjct: 342 WFKP-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 156/389 (40%), Gaps = 80/389 (20%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRL 79
+ + Q F W N W N L++ +L + GIT VW+PP + + GY L
Sbjct: 5 TNGTMMQYFEWHLPNDGNHW-NRLRDDAANLKSKGITAVWIPPAWKGTSQNDVGYGAYDL 63
Query: 80 YDLDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH---------------- 115
YDL +KYG+++ L+ + + + GI+ D+V+NH
Sbjct: 64 YDLGEFNQKGTVRTKYGTRSQLQGAVTSLKNNGIQVYGDVVMNHKGGADGTEMVNAVEVN 123
Query: 116 RTAERKDGRGIYCIF---------EGGTSD---------DRLDWGPS-------FICRGD 150
R+ ++ G Y I G T D DW S + RG
Sbjct: 124 RSNRNQEISGEYTIEAWTKFDFPGRGNTHSNFKWRWYHFDGTDWDQSRQLQNKIYKFRGT 183
Query: 151 KEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209
+ D + + + G D+ DID +P V EL +W W + DG+R D VK
Sbjct: 184 GKAWDWEVDIENGNYDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAVKHIKY 243
Query: 210 SITK---VYMENTS--PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
S T+ ++ NT+ P FAV E W K D A+++++ +
Sbjct: 244 SYTRDWLTHVRNTTGKPMFAVAEFW---------KNDL------AAIENYLNKTSWNHSV 288
Query: 265 FDFTTK-GILQAAVQGELWRLKDS-NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
FD + A+ G + +++ NG + P +AVTF+DNHD+ + L F
Sbjct: 289 FDVPLHYNLYNASNSGGYFDMRNILNGS---VVQKHPIHAVTFVDNHDSQPGEALESFVQ 345
Query: 323 DKVM-LGYAYILTHP-GTPCIVISVTYPL 349
L YA ILT G P + Y +
Sbjct: 346 SWFKPLAYALILTREQGYPSVFYGDYYGI 374
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 153/389 (39%), Gaps = 95/389 (24%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
L Q F W N W L+N L+ GIT VW+PP + S A GY LYDL
Sbjct: 7 LMQYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAERKD---- 122
+KYG++ +L+S I++ + I D+VINH+ TA D
Sbjct: 66 EFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADR 125
Query: 123 -------------------GRGI--------YCIFEGGTSDDRLDWGPSFICRG---DKE 152
GRG + F+G D+ + +G D E
Sbjct: 126 NRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWE 185
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
S+ GN D+ DID+ +P V E+ W W E+ DG+R D VK S
Sbjct: 186 VSNEFGN----YDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFL 241
Query: 213 KVYM----ENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ ++ E T + F V E W SY GAL++++ + FD
Sbjct: 242 RDWVNHVREKTGKEMFTVAEYW---SYDL------------GALENYLNKTNFNHSVFDV 286
Query: 268 TTKGILQAA-VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWP 319
AA QG + ++ NG + P +VTF+DNHDT ST + W
Sbjct: 287 PLHYQFHAASTQGGGYDMRKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWF 343
Query: 320 FPSDKVMLGYAYILTHP-GTPCIVISVTY 347
P L YA+ILT G P + Y
Sbjct: 344 KP-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 153/389 (39%), Gaps = 95/389 (24%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
L Q F W N W L+N L+ GIT VW+PP + S A GY LYDL
Sbjct: 7 LMQYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAERKD---- 122
+KYG++ +L+S I++ + I D+VINH+ TA D
Sbjct: 66 EFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADR 125
Query: 123 -------------------GRGI--------YCIFEGGTSDDRLDWGPSFICRG---DKE 152
GRG + F+G D+ + +G D E
Sbjct: 126 NRVISGEVLIKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWE 185
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
S+ GN D+ DID+ +P V E+ W W E+ DG+R D VK S
Sbjct: 186 VSNEFGN----YDYLMYADIDYDHPDVVAEIKRWGTWYANELQLDGFRLDAVKHIKFSFL 241
Query: 213 KVYM----ENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ ++ E T + F V E W SY GAL++++ + FD
Sbjct: 242 RDWVNHVREKTGKEMFTVAEYW---SYDL------------GALENYLNKTNFNHSVFDV 286
Query: 268 TTKGILQAA-VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWP 319
AA QG + ++ NG + P +VTF+DNHDT ST + W
Sbjct: 287 PLHYQFHAASTQGGGYDMRKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWF 343
Query: 320 FPSDKVMLGYAYILTHP-GTPCIVISVTY 347
P L YA+ILT G P + Y
Sbjct: 344 KP-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 148/382 (38%), Gaps = 91/382 (23%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
+ Q F W + W + N +LS+ GIT +WLPP + S + GY LYDL
Sbjct: 8 MMQYFEWYLPDDGTLW-TKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLG 66
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAE 119
+KYG++A IQA G++ AD+V +H+ +
Sbjct: 67 EFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDR 126
Query: 120 RKDGRGIYCIFEGGTSD------------------DRLDWGPS------FICRGDKEYSD 155
++ G Y I D D +DW S + RG + D
Sbjct: 127 NQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWD 186
Query: 156 GQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS---- 210
+ + + G D+ D+D +P V EL W W DG+R D VK S
Sbjct: 187 WEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPD 246
Query: 211 -ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
++ V + P F VGE W SY D N+ L +++ G ++ FD
Sbjct: 247 WLSYVRSQTGKPLFTVGEYW---SY------DINK------LHNYIMKTNGTMSLFD--- 288
Query: 270 KGILQAAVQGELWRLKDSNGK-------PPGFIGILPQNAVTFIDNHDTGSTQRL--WPF 320
A + + + S G + P AVTF+DNHDT Q L W
Sbjct: 289 -----APLHNKFYTASKSGGTFDMRTLMTNTLMKDQPTLAVTFVDNHDTEPGQALQSWVD 343
Query: 321 PSDKVMLGYAYILT-HPGTPCI 341
P K L YA+ILT G PC+
Sbjct: 344 PWFKP-LAYAFILTRQEGYPCV 364
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 133/322 (41%), Gaps = 51/322 (15%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQA 99
G + LKN++ L GI VWL P S++ GY Y A +YGS+ + K +I+A
Sbjct: 20 GDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKA-EYGSEREFKEMIEA 78
Query: 100 FRQKGIKCLADMVINH--------RTAERKD--GRGIYCIFEGGTS-DDRLDWGPSFICR 148
F GIK + D+ I+H + A + D R Y T D+R +W
Sbjct: 79 FHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWD------ 132
Query: 149 GDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
G+K + + F P +PD+++ NP+V E+ + L ++G DG+RFD K
Sbjct: 133 GEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHL-LDMGVDGFRFDAAKHM 191
Query: 208 APSIT------KVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261
+I K ++ + F + E W +A G + ++
Sbjct: 192 RDTIEQNVRFWKYFLSDLKGIF-LAEIW----------AEARMVDEHGRIFGYM------ 234
Query: 262 VAAFDFTTKGILQAAVQGELWR-LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLW-P 319
+F T ++ AV E R L +S + LP V F NHD
Sbjct: 235 ---LNFDTSHCIKEAVWKENTRVLIESIERAVIAKDYLP---VNFTSNHDMSRLASFEGG 288
Query: 320 FPSDKVMLGYAYILTHPGTPCI 341
F +K+ L + + T PG P +
Sbjct: 289 FSKEKIKLSISILFTLPGVPLV 310
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 124/307 (40%), Gaps = 27/307 (8%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + + L++ GIT ++L P ++ + Y +++D +G + LK+L++
Sbjct: 172 GGDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEID-PHFGDKETLKTLVK 230
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
+KGI+ + D V NH E + + + G + DW F R ++ +
Sbjct: 231 RCHEKGIRVMLDAVFNHCGYEFAPFQD---VLKNGAASRYKDW---FHIREFPLQTEPRP 284
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN 218
N DT P ++ +P V++ L D + E DGWR D + + +
Sbjct: 285 NYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREFRQA 344
Query: 219 T---SPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQ 274
PD + +GE W D P RG D V A AA F K +
Sbjct: 345 VKALKPDVYILGEIWH------DAMP-----WLRGDQFDAVMNYPLADAALRFFAKEDMS 393
Query: 275 AAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILT 334
A+ + RL P + + A + +HDT + KV L + + LT
Sbjct: 394 ASEFAD--RLMHVLHSYPKQVN---EAAFNLLGSHDTPRLLTVCGGDVRKVKLLFLFQLT 448
Query: 335 HPGTPCI 341
G+PCI
Sbjct: 449 FTGSPCI 455
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 126/312 (40%), Gaps = 37/312 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + + L + GIT ++L P +S + Y +++D +G + LK+LI
Sbjct: 172 GGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPH-FGDKETLKTLID 230
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
+KGI+ + D V NH E + ++ + G S DW F ++ +
Sbjct: 231 RCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDW---FHIHEFPLQTEPRP 284
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN 218
N DT P ++ NP V++ L D + E DGWR D + + +
Sbjct: 285 NYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQE 344
Query: 219 T---SPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGIL 273
PD + +GE W D P W++ AV + F T G+L
Sbjct: 345 VKALKPDVYILGEIWH------DAMP-------------WLRGDQFDAVMNYPF-TDGVL 384
Query: 274 QAAVQGELWRLKDSNGKPPGFIGILPQN----AVTFIDNHDTGSTQRLWPFPSDKVMLGY 329
+ + E+ + +N + + P N A + +HDT + KV L +
Sbjct: 385 RFFAKEEISARQFAN-QMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF 443
Query: 330 AYILTHPGTPCI 341
+ LT G+PCI
Sbjct: 444 LFQLTFTGSPCI 455
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 126/312 (40%), Gaps = 37/312 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + + L + GIT ++L P +S + Y +++D +G + LK+LI
Sbjct: 172 GGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPH-FGDKETLKTLID 230
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
+KGI+ + D V NH E + ++ + G S DW F ++ +
Sbjct: 231 RCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDW---FHIHEFPLQTEPRP 284
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN 218
N DT P ++ NP V++ L D + E DGWR D + + +
Sbjct: 285 NYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQE 344
Query: 219 T---SPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGIL 273
PD + +G+ W D P W++ AV + F T G+L
Sbjct: 345 VKALKPDVYILGQIWH------DAMP-------------WLRGDQFDAVMNYPF-TDGVL 384
Query: 274 QAAVQGELWRLKDSNGKPPGFIGILPQN----AVTFIDNHDTGSTQRLWPFPSDKVMLGY 329
+ + E+ + +N + + P N A + +HDT + KV L +
Sbjct: 385 RFFAKEEISARQFAN-QMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF 443
Query: 330 AYILTHPGTPCI 341
+ LT G+PCI
Sbjct: 444 LFQLTFTGSPCI 455
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 27/307 (8%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + + L++ GIT ++L P ++ + Y +++D +G + LK+L++
Sbjct: 172 GGDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEID-PHFGDKETLKTLVK 230
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
+KGI+ + D V NH E + + + G + DW F R ++ +
Sbjct: 231 RCHEKGIRVMLDAVFNHCGYEFAPFQD---VLKNGAASRYKDW---FHIREFPLQTEPRP 284
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN 218
N DT P ++ +P V++ L D + E DGWR D + + +
Sbjct: 285 NYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREFRQA 344
Query: 219 T---SPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQ 274
PD + +G W D P RG D V A AA F K +
Sbjct: 345 VKALKPDVYILGLIWH------DAMP-----WLRGDQFDAVMNYPLADAALRFFAKEDMS 393
Query: 275 AAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILT 334
A+ + RL P + + A + +HDT + KV L + + LT
Sbjct: 394 ASEFAD--RLMHVLHSYPKQVN---EAAFNLLGSHDTPRLLTVCGGDVRKVKLLFLFQLT 448
Query: 335 HPGTPCI 341
G+PCI
Sbjct: 449 FTGSPCI 455
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGS 89
GG + + + + + G T +W+ P + + A GY +Y L+ YG+
Sbjct: 38 CGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLN-ENYGT 96
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP-SFICR 148
DLK+L A ++G+ + D+V NH + Y +F+ +S D P FI
Sbjct: 97 ADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFH--PFCFI-- 152
Query: 149 GDKEYSDGQGNDDT--GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
+ Y D +D G++ PD+D V+ E DW+ L + DG R D VK
Sbjct: 153 --QNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVK 209
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGS 89
GG + + + + + G T +W+ P + + A GY +Y L+ YG+
Sbjct: 38 CGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQDCAYGDAYTGYWQTDIYSLN-ENYGT 96
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP-SFICR 148
DLK+L A ++G+ + D+V NH + Y +F+ +S D P FI
Sbjct: 97 ADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFH--PFCFI-- 152
Query: 149 GDKEYSDGQGNDDT--GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
+ Y D +D G++ PD+D V+ E DW+ L + DG R D VK
Sbjct: 153 --QNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVK 209
>pdb|1BPL|A Chain A, Glycosyltransferase
Length = 189
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ--SVAPQGYMPGRLYDLD 83
L Q F W N W L+N L+ GIT VW+PP + S A GY LYDL
Sbjct: 7 LMQYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116
+KYG++ +L+S I++ + I D+VINH+
Sbjct: 66 EFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHK 106
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 123/334 (36%), Gaps = 53/334 (15%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPP---------SQSVAPQGYMPGRLYDLDASKYGS 89
GG ++ +P L G+T +WL P + + GY R + +G+
Sbjct: 48 GGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWT-RDFKQIEEHFGN 106
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG 149
+L+ Q GIK + D V NH T + + EGG + + ++
Sbjct: 107 WTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDS---TFAEGGALYNNGTYMGNYFDDA 163
Query: 150 DKEYSDGQGNDDTGEDFQPA-------------PDIDHLNPRVQKELSDWMNWLKTEIGF 196
K Y G+ +D A D+ N + + L+D L G
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAH-GA 222
Query: 197 DGWRFDFVK----GYAPSIT-KVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
DG R D VK G++ S+ K+Y + F VGE W YG D G L
Sbjct: 223 DGLRIDAVKHFNSGFSKSLADKLYQK--KDIFLVGE-W----YGDD-------PGTANHL 268
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNG--KPPGFIGILPQNAVTFIDNH 309
+ A V DF +++ + D N G +N +TFIDNH
Sbjct: 269 EKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFIDNH 328
Query: 310 DTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
D R S+K L A+ILT GTP I
Sbjct: 329 D---MSRFLSVNSNKANLHQALAFILTSRGTPSI 359
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 135/341 (39%), Gaps = 71/341 (20%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + D + D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSSYE--DGIYRNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
G DG R D VK K +M N P F GE + G + + + H+
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK--- 271
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA--------- 302
+ +G ++ F F K + Q +D+ G +L +A
Sbjct: 272 --FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQ 320
Query: 303 VTFIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
VTFIDNHD +R +++ L A+ LT G P I
Sbjct: 321 VTFIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 136/341 (39%), Gaps = 71/341 (20%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
G DG R D VK K +M N P F GE + G + + + H+
Sbjct: 222 GIDGIRMDVVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK--- 271
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA--------- 302
+ +G ++ F F K + Q +D+ G +L +A
Sbjct: 272 --FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQ 320
Query: 303 VTFIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
VTFIDNHD +R +++ L A+ LT G P I
Sbjct: 321 VTFIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLGDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLLDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 116/312 (37%), Gaps = 36/312 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + + LS G+ V+ P ++ Y + +D ++G + LK L+
Sbjct: 168 GGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQID-PQFGDKDTLKKLVD 226
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRG---IYCIFEGGTSDDRLDWGPSFICRG-DKEYS 154
++GI+ L D V NH GR + + G DW F R E
Sbjct: 227 LCHERGIRVLLDAVFNH------SGRTFPPFVDVLKNGEKSKYKDW---FHIRSLPLEVV 277
Query: 155 DGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213
DG DT F+P P ++ +P V++ L + E G DGWR D + +
Sbjct: 278 DGIPTYDTFA-FEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
+ ++ +PD + +GE W S +G D V A DF
Sbjct: 337 EFRRVVKQANPDAYILGEVWHESSIWLEGDQ-----------FDAVMNYPFTNAVLDFFI 385
Query: 270 KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGY 329
I A + K G P ++ +D+HDT K+ L
Sbjct: 386 HQIADAE-KFSFMLGKQLAGYPRQASEVM----FNLLDSHDTARLLTQADGDKRKMKLAV 440
Query: 330 AYILTHPGTPCI 341
+ T+ GTPCI
Sbjct: 441 LFQFTYFGTPCI 452
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLFDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 134/341 (39%), Gaps = 71/341 (20%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + G D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTENGIYKG--LYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
G DG R D VK K +M N P F GE + G + + + H+
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK--- 271
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA--------- 302
+ +G ++ F F K + Q +D+ G +L +A
Sbjct: 272 --FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQ 320
Query: 303 VTFIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
VTFIDNHD +R +++ L A+ LT G P I
Sbjct: 321 VTFIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 136/341 (39%), Gaps = 71/341 (20%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLWDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
G DG R D VK K +M N P F GE + G + + + H+
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK--- 271
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA--------- 302
+ +G ++ F F K + Q +D+ G +L +A
Sbjct: 272 --FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQ 320
Query: 303 VTFIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
VTFIDNHD +R +++ L A+ LT G P I
Sbjct: 321 VTFIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 34/203 (16%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
+++ G+ +WL P +S + GY Y ++ YG+ D L++A Q+GIK + D+
Sbjct: 44 IADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPD-YGTLEDFHKLVEAAHQRGIKVIIDL 102
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG-DKEYSDGQGNDDTGEDFQPA- 169
INH T+ER + F + D ++ ++ G D + + + + + P
Sbjct: 103 PINH-TSER------HPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTG 155
Query: 170 ----------PDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSIT------ 212
PD+++ NP VQ+++ WLK G DG+R D P
Sbjct: 156 MYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ--GVDGFRLDGAMHIFPPAQYDKNFT 213
Query: 213 -----KVYMENTSPDFAVGEKWD 230
+ +E P + VGE WD
Sbjct: 214 WWEKFRQEIEEVKPVYLVGEVWD 236
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINDSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F G+ + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1BPL|B Chain B, Glycosyltransferase
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 41/199 (20%)
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-- 222
D+ DID+ +P V E+ W W E+ DG+R D VK S + ++ +
Sbjct: 5 DYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTG 64
Query: 223 ---FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA-VQ 278
F V E W + GAL++++ + FD AA Q
Sbjct: 65 KEMFTVAEYWQN---------------DLGALENYLNKTNFNHSVFDVPLHYQFHAASTQ 109
Query: 279 G---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWPFPSDKVMLGY 329
G ++ +L +S + P AVTF+DNHDT ST + W P L Y
Sbjct: 110 GGGYDMRKLLNST-----VVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKP-----LAY 159
Query: 330 AYILTHP-GTPCIVISVTY 347
A+ILT G P + Y
Sbjct: 160 AFILTRESGYPQVFYGDMY 178
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + + NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 132/326 (40%), Gaps = 47/326 (14%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + L N I D S+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT-AERKDGRGIY--CIFEGGTSDDRLDW 141
+G+ AD ++LI KGIK + D NH + A+ ++GR +Y GG ++D +
Sbjct: 110 PYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGR-LYDNGTLVGGYTNDTNGY 168
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWR 200
F G ++S + + ++ D +H N + K D + WL ++G DG R
Sbjct: 169 ---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DMGVDGIR 221
Query: 201 FDFVKGYAPSITKVYMENT---SPDFAVGEKW--DSLSYGPDGKPDANQDGHRGALKDWV 255
D VK K +M + P F GE W S + D AN+ G +L D+
Sbjct: 222 VDAVKHMPLGWQKSWMSSIYAHKPVFTFGE-WFLGSAASDADNTDFANKSGM--SLLDF- 277
Query: 256 QAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ 315
F+ + + + N + + Q VTFIDNHD
Sbjct: 278 --------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM-DRF 326
Query: 316 RLWPFPSDKVMLGYAYILTHPGTPCI 341
+ + ++ A+ LT G P I
Sbjct: 327 KTSAVNNRRLEQALAFTLTSRGVPAI 352
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 141/338 (41%), Gaps = 66/338 (19%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDLDAS 85
GG + + N I D L++ G+T +W+ P ++V + GY R +
Sbjct: 48 GGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYW-ARDFKKPNP 106
Query: 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRT-------AERKDGRGIY---CIFEGGTS 135
+G+ +D + L+ A KGIK + D NH + + ++GR +Y + G T+
Sbjct: 107 FFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGR-LYDNGTLLGGYTN 165
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
D + F G +S + D + D++H NP + + L D + W+ ++
Sbjct: 166 DANM----YFHHNGGTTFSSLE--DGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI--DM 217
Query: 195 GFDGWRFDFVK----GYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGA 250
G DG R D VK G+ S+ ++N P F GE W + + + DAN
Sbjct: 218 GIDGIRMDAVKHMPFGWQKSLMD-EIDNYRPVFTFGE-W----FLSENEVDANN------ 265
Query: 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGELW-----RLKDSNGKPPGFIGILPQNAVTF 305
+ +G ++ F F K + W ++D+ + +L Q VTF
Sbjct: 266 -HYFANESGMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDT---ASAYDEVLDQ--VTF 319
Query: 306 IDNHDTGSTQRLWPFPSD--KVMLGYAYILTHPGTPCI 341
IDNHD R D KV + A +LT G P I
Sbjct: 320 IDNHD---MDRFMIDGGDPRKVDMALAVLLTSRGVPNI 354
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 134/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ GIT +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ D K+LI IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A A F T + L+A ++G N + VTFIDN
Sbjct: 280 LLDY-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R D+ L A+ LT G P I
Sbjct: 327 HD---MERFHTSNGDRRKLEQALAFTLTSRGVPAI 358
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R + VK K +M N P F G+ + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMNAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 134/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ GIT +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ D K+LI IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GVDGIRVDAVKNMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A A F T + L+A ++G N + VTFIDN
Sbjct: 280 LLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R D+ L A+ LT G P I
Sbjct: 327 HD---MERFHTSNGDRRKLEQALAFTLTSRGVPAI 358
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 136/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 134/346 (38%), Gaps = 81/346 (23%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY---CIFEGGT 134
YG+ AD ++LI A K IK + D NH + D GR +Y + G T
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 135 SDDR----LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-W 189
+D + + G F + Y ++ D++H N V L D + W
Sbjct: 169 NDTQNLFHHNLGTDFSTTENGIY----------KNLYDLADLNHNNSTVDVYLKDAIKMW 218
Query: 190 LKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDG 246
L ++G DG R D VK K +M N P F GE + G + + +
Sbjct: 219 L--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWF-------LGVNEVSPEN 269
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---- 302
H+ + +G ++ F F K + Q +D+ G +L +A
Sbjct: 270 HK-----FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYA 315
Query: 303 -----VTFIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
VTFIDNHD +R +++ L A+ LT G P I
Sbjct: 316 QVDDQVTFIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 134/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ GIT +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ D K+LI IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A A F T + L+A ++G N + VTFIDN
Sbjct: 280 LLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R D+ L A+ LT G P I
Sbjct: 327 HD---MERFHTSNGDRRKLEQALAFTLTSRGVPAI 358
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 134/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ GIT +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ D K+LI IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE + ++ P+ AN+ G +
Sbjct: 222 GVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D ++ A A F T + L+A ++G N + VTFIDN
Sbjct: 280 LLD-LRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R D+ L A+ LT G P I
Sbjct: 327 HD---MERFHTSNGDRRKLEQALAFTLTSRGVPAI 358
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 132/334 (39%), Gaps = 57/334 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSVAPQGYMPG-----------RLYDLDAS 85
GG + + N I D L+ GIT +W+ P +++ G R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGLWARDFKKTNP 110
Query: 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSD 136
YG+ D K+LI IK + D NH + D GR +Y GG ++
Sbjct: 111 AYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTN 169
Query: 137 DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIG 195
D + F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 170 DTQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLG 222
Query: 196 FDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGAL 251
DG R D VK K +M N P F GE + ++ P+ AN+ G +L
Sbjct: 223 VDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--SL 280
Query: 252 KDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
D+ + A A F T + L+A ++G N + VTFIDNH
Sbjct: 281 LDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNH 327
Query: 310 DTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
D +R D+ L A+ LT G P I
Sbjct: 328 D---MERFHTSNGDRRKLEQALAFTLTSRGVPAI 358
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ AD ++LI A K IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R VK K +M N P F G + ++ P+ AN+ G +
Sbjct: 222 GIDGIRMAAVKHMPFGWQKSFMAAVNNYKPVFTFGAWFLGVNEVSPENHKFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A F T + L+A ++G + + VTFIDN
Sbjct: 280 LLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R +++ L A+ LT G P I
Sbjct: 327 HD---MERFHASNANRRKLEQALAFTLTSRGVPAI 358
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 132/335 (39%), Gaps = 59/335 (17%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + + N I D L+ GIT +W+ P +++ A GY R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTS 135
YG+ D K+LI IK + D NH + D GR +Y GG +
Sbjct: 110 PAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G + S + + ++ D++H N V L D + WL ++
Sbjct: 169 NDTQNL---FHHYGGTDLSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DL 221
Query: 195 GFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGA 250
G DG R D VK K +M N P F GE ++ P+ AN+ G +
Sbjct: 222 GVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWLLGVNEISPEYHQFANESGM--S 279
Query: 251 LKDWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
L D+ + A A F T + L+A ++G N + VTFIDN
Sbjct: 280 LLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDN 326
Query: 309 HDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCI 341
HD +R D+ L A+ LT G P I
Sbjct: 327 HD---MERFHTSNGDRRKLEQALAFTLTSRGVPAI 358
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 131/332 (39%), Gaps = 53/332 (15%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + L N I D S+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIY--CIFEGGTS 135
+G+ AD ++LI KGIK + D NH T+ ++GR +Y GG +
Sbjct: 110 PYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR-LYDNGTLVGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D +H N + K D + WL ++
Sbjct: 169 NDTNGY---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DM 221
Query: 195 GFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKW--DSLSYGPDGKPDANQDGHRG 249
G DG R D VK K +M + P F GE W S + D AN+ G
Sbjct: 222 GVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGE-WFLGSAASDADNTDFANKSGM-- 278
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+L D+ F+ + + + N + + Q VTFIDNH
Sbjct: 279 SLLDF---------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNH 327
Query: 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
D + + ++ A+ LT G P I
Sbjct: 328 DM-DRFKTSAVNNRRLEQALAFTLTSRGVPAI 358
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 129/341 (37%), Gaps = 71/341 (20%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + L N I D S+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIYCIFEGGTSDD 137
+G+ AD ++LI KGIK + D NH T+ ++GR +++ GT
Sbjct: 110 PYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR----LYDNGT--- 162
Query: 138 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-----------APDIDHLNPRVQKELSDW 186
+ G ++G + + G DF D +H N + K D
Sbjct: 163 --------LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDA 214
Query: 187 MN-WLKTEIGFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKW--DSLSYGPDGKP 240
+ WL ++G DG R D VK K +M + P F GE W S + D
Sbjct: 215 IKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGE-WFLGSAASDADNTD 271
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
AN+ G +L D+ F+ + + + N + + Q
Sbjct: 272 FANKSGM--SLLDF---------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ 320
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
VTFIDNHD + + ++ A+ LT G P I
Sbjct: 321 --VTFIDNHDM-DRFKTSAVNNRRLEQALAFTLTSRGVPAI 358
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
+ N GI ++ P QS + Y Y +D G++A K L+ A Q+ IK + D
Sbjct: 65 IQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEA-FKELLDAAHQRNIKVVLDG 123
Query: 112 VINHRTAERKDGRGIYC---IFEGGTSDDRLDW-----GPSFICRGD--KEYSDGQGNDD 161
V NH + RG + + E G ++W P G+ Y GN
Sbjct: 124 VFNHSS------RGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANYVGWAGN-- 175
Query: 162 TGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDF-VKGYAPSITKVYMENT 219
+ P+ +H NP V++ + + WLK G DGWR D + P + + + T
Sbjct: 176 -----RALPEFNHDNPEVREYIMEIAEYWLK--FGIDGWRLDVPFEIKTPGFWQEFRDRT 228
Query: 220 ---SPD-FAVGEKW 229
+P+ + VGE W
Sbjct: 229 KAINPEAYIVGEVW 242
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102
N + + L GI +W+ P S R Y +YG+ D LI ++
Sbjct: 31 NGIIEKLDYLKALGIDAIWINPHYDSPNTDNGYDIRDYRKIMKEYGTMEDFDRLISEMKK 90
Query: 103 KGIKCLADMVINH---------RTAERKDG--RGIYCIFEGGTSDDRLDWGPSFICRGDK 151
+ ++ + D+VINH ++ KD RG Y ++ + PSF G
Sbjct: 91 RNMRLMIDVVINHTSDQNEWFVKSKSSKDNPYRG-YYFWKDAKEGQAPNNYPSFFG-GSA 148
Query: 152 EYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYA- 208
D + N F + PD++ NP+V+++L + WL + G G RFD V Y+
Sbjct: 149 WQKDEKTNQYYLHYFAKQQPDLNWDNPKVRQDLYAMLRFWL--DKGVSGLRFDTVATYSK 206
Query: 209 ----PSITKVYMENTSPDFAVG 226
P++T+ ++N + ++ G
Sbjct: 207 IPDFPNLTQQQLKNFAAEYTKG 228
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 130/332 (39%), Gaps = 53/332 (15%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + L N I D S+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIY--CIFEGGTS 135
+G+ AD ++LI KGIK + D NH T+ ++GR +Y GG +
Sbjct: 110 PYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR-LYDNGTLVGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D +H N + K D + WL ++
Sbjct: 169 NDTNGY---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DM 221
Query: 195 GFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKW--DSLSYGPDGKPDANQDGHRG 249
G DG R D VK K +M + P F G W S + D AN+ G
Sbjct: 222 GVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGA-WFLGSAASDADNTDFANKSGM-- 278
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+L D+ F+ + + + N + + Q VTFIDNH
Sbjct: 279 SLLDF---------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNH 327
Query: 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
D + + ++ A+ LT G P I
Sbjct: 328 DM-DRFKTSAVNNRRLEQALAFTLTSRGVPAI 358
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 27/205 (13%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGS 89
GG + + + + + G T +W+ P ++ + A GY ++YD++ S +G+
Sbjct: 38 CGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVN-SNFGT 96
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL-------DWG 142
+LKSL A +G+ + D+V +H Y +F+ S DW
Sbjct: 97 ADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWD 156
Query: 143 PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ E G+ PD+D V+ DW+ L + DG R D
Sbjct: 157 NLTMVEDCWE----------GDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
Query: 203 FVKGYAPSITKVYMENTSPDFAVGE 227
V P Y S + VGE
Sbjct: 207 SVLEVQPDFFPGY-NKASGVYCVGE 230
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 130/332 (39%), Gaps = 53/332 (15%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDA 84
GG + L N I D S+ G+T +W+ P +++ A GY R +
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYW-ARDFKKTN 109
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIY--CIFEGGTS 135
+G+ AD ++LI KGIK + D NH T+ ++GR +Y GG +
Sbjct: 110 PYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR-LYDNGTLVGGYT 168
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + + ++ D +H N + K D + WL ++
Sbjct: 169 NDTNGY---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DM 221
Query: 195 GFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKW--DSLSYGPDGKPDANQDGHRG 249
G DG R VK K +M + P F GE W S + D AN+ G
Sbjct: 222 GVDGIRVAAVKHMPLGWQKSWMSSIYAHKPVFTFGE-WFLGSAASDADNTDFANKSGM-- 278
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+L D+ F+ + + + N + + Q VTFIDNH
Sbjct: 279 SLLDF---------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNH 327
Query: 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
D + + ++ A+ LT G P I
Sbjct: 328 DM-DRFKTSAVNNRRLEQALAFTLTSRGVPAI 358
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 131/342 (38%), Gaps = 70/342 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
L + GI +W+ P S Y +YG+ D SL+ +++ ++ + D+
Sbjct: 54 LKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV 113
Query: 112 VINHRT----------AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDD 161
VINH + +++ + Y + G + + PSF G D +
Sbjct: 114 VINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFG-GSAWQKDAKSGQY 172
Query: 162 TGEDF-QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYA-----PSITKV 214
F + PD++ NP+V+++L + WL + G G RFD V Y+ P++T
Sbjct: 173 YLHYFARQQPDLNWDNPKVREDLYAMLRFWL--DKGVSGMRFDTVATYSKIPGFPNLTPE 230
Query: 215 YMENTSPDFAVGEKWDSLSYGPDGKPDAN---QDGHRGALKDWVQAAGGAV--------A 263
+N + + +G P+ + Q+ +R L + A G + +
Sbjct: 231 QQKNFAEQYTMG-------------PNIHRYIQEMNRKVLSRYDVATAGEIFGVPLDRSS 277
Query: 264 AFDFTTKGILQAAVQGELWRL-KDSNGK-------PPGFIGILPQNAVT---------FI 306
F + L A +L RL +DSN + F I+ + VT F+
Sbjct: 278 QFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGKYGWNTFFL 337
Query: 307 DNHDT-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
DNHD G + W S K + LT TP I
Sbjct: 338 DNHDNPRAVSHFGDDRPQWREASAKALA--TITLTQRATPFI 377
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
Query: 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS---------- 68
P + +NW +N+LKN++ D+ +AG T + P +Q
Sbjct: 1 PSIKSGTILHAWNWS--------FNTLKNNMKDIHDAGYTAIQTSPINQVKEGNKGDKSM 52
Query: 69 ------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119
P Y G Y GS+ + K + A + G+K + D VINH T++
Sbjct: 53 GNWYWLYQPTSYQIGNRY------LGSEEEFKEMCAAAEEYGVKVIVDAVINHTTSD 103
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR D + +
Sbjct: 282 NYETAAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRG 125
Y +YG+ D L+ +++G++ + D+VINH + A + +
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 125 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYA 184
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RFD V Y+ P +T M+N + + G
Sbjct: 185 MLRFWL--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 229
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRG 125
Y +YG+ D L+ +++G++ + D+VINH + A + +
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 125 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLREELYA 184
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RFD V Y+ P +T M+N + + G
Sbjct: 185 MLRFWL--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 229
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 4 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRG 125
Y +YG+ D L+ +++G++ + D+VINH + A + +
Sbjct: 64 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 124 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYA 183
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RFD V Y+ P +T M+N + + G
Sbjct: 184 MLRFWL--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 228
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 4 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRG 125
Y +YG+ D L+ +++G++ + D+VINH + A + +
Sbjct: 64 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 124 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYA 183
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RFD V Y+ P +T M+N + + G
Sbjct: 184 MLRFWL--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 228
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRG 125
Y +YG+ D L+ +++G++ + D+VINH + A + +
Sbjct: 65 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 125 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYA 184
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RFD V Y+ P +T M+N + + G
Sbjct: 185 MLRFWL--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 229
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 32 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 91
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI------ 126
Y +YG+ D L+ +++G++ + D+VINH + + K R
Sbjct: 92 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 151
Query: 127 -YCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 152 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYA 211
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RFD V Y+ P +T M+N + + G
Sbjct: 212 MLRFWL--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 256
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
L GI +WL P +S Y +++G+ D L+ ++ +K + D+
Sbjct: 40 LKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDL 99
Query: 112 VINHRTAER---------KDG--RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
V+NH + E KD R Y G + +WG +F S Q ++
Sbjct: 100 VVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSG------SAWQYDE 153
Query: 161 DTGEDF-----QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFV 204
T E + + PD++ N +V++++ + M WL E G DG+R D +
Sbjct: 154 MTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL--EKGIDGFRMDVI 201
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR D + +
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR D + +
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR D + +
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR D + +
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR D + +
Sbjct: 282 NYETYAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 40/233 (17%)
Query: 17 FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMP 76
F P+ +P L +GF GG + +P L + G+ ++L P S A Y
Sbjct: 32 FEPWEAPPTL-RGFK-------GGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHT 83
Query: 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYC---IFEGG 133
+ +D G++A L+ L++ G++ + D V NH GRG + + E G
Sbjct: 84 VDYFQVDPILGGNEA-LRHLLEVAHAHGVRVILDGVFNH------TGRGFFAFQHLXENG 136
Query: 134 TSDDRLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE-LSDWM 187
DW P Y GN + P + P V++ L+
Sbjct: 137 EQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNPEL-------PKLKVETPAVREYLLAVAE 189
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSIT-----KVYMENTSPD-FAVGEKWDSLSY 234
+W++ G DGWR D V P T + ++ +P+ + VGE W+ +
Sbjct: 190 HWIR--FGVDGWRLD-VPNEIPDPTFWREFRQRVKGANPEAYIVGEIWEEADF 239
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
L GI +WL P QS Y+ +YG+ AD+ LI ++ IK + D+
Sbjct: 41 LEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDL 100
Query: 112 VINHRTAERK 121
V+NH + + K
Sbjct: 101 VVNHTSDQHK 110
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 52 LSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110
L G+ +WL P S + GY Y+ A +G+ AD+ +L+ + +GIK + D
Sbjct: 40 LQKLGVMAIWLSPVYDSPMDDNGYDIAN-YEAIADIFGNMADMDNLLTQAKMRGIKIIMD 98
Query: 111 MVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN-----DDTGED 165
+V+NH + E E D + C + G DD +
Sbjct: 99 LVVNHTSDEHA------WFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQ 152
Query: 166 F------QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFV 204
+ + PD++ N +++++ D MN W+ IG G+R D +
Sbjct: 153 YYLHFFSKKQPDLNWENANLRQKIYDMMNFWIDKGIG--GFRMDVI 196
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 52 LSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110
L G+ +WL P S + GY Y+ A +G+ AD+ +L+ + +GIK + D
Sbjct: 40 LQKLGVMAIWLSPVYDSPMDDNGYDIAN-YEAIADIFGNMADMDNLLTQAKMRGIKIIMD 98
Query: 111 MVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN-----DDTGED 165
+V+NH + E E D + C + G DD +
Sbjct: 99 LVVNHTSDEHA------WFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQ 152
Query: 166 F------QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFV 204
+ + PD++ N +++++ D MN W+ IG G+R D +
Sbjct: 153 YYLHFFSKKQPDLNWENANLRQKIYDMMNFWIDKGIG--GFRMDVI 196
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 42/178 (23%)
Query: 45 LKNSIPDLSNAGITHVWLPPPSQ-----SVAPQGYMPG---RLYDLDASKYGSQ------ 90
+K I L GIT V L P + P Y G R Y++ Y +
Sbjct: 471 VKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTAR 530
Query: 91 -ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICR 148
+LK LIQ+ Q+ I D+V NH F+ SD D++ P + R
Sbjct: 531 ITELKQLIQSLHQQRIGVNMDVVYNH-------------TFDVMVSDFDKI--VPQYYYR 575
Query: 149 GDKE--YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
D Y++G G G +F +P QK + D +N+ E DG+RFD +
Sbjct: 576 TDSNGNYTNGSG---XGNEFATE------HPMAQKFVLDSVNYWVNEYHVDGFRFDLM 624
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
L++ G+T+ W P +P+ Y G K ++ GI+ + D+
Sbjct: 233 LTDKGLTNYWGYDPINFFSPEC-----RYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDV 287
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE--YSDGQGNDDTGEDFQPA 169
V NH TAE + G F G +D ++ + D + Y D G +T
Sbjct: 288 VYNH-TAE-GNHLGPTLSFRG------IDNTAYYMLQPDNKRYYLDFTGTGNT------- 332
Query: 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT 219
++ +PRV + + D + + TE+ DG+RFD A + V M NT
Sbjct: 333 --LNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALARELYSVNMLNT 380
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 52 LSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110
L G+ VW+ P +S A GY Y + ++G+ D L+ ++G+K + D
Sbjct: 40 LVELGVDIVWICPIYRSPNADNGYDISDYYAI-MDEFGTMDDFDELLAQAHRRGLKVILD 98
Query: 111 MVINHRTAERKDGRGIYCIFEGGTSDD--RLDWGPSFICRGDKE------------YSDG 156
+VINH + E E +S D + DW +I R K+ S
Sbjct: 99 LVINHTSDEHP------WFIESRSSRDNPKRDW---YIWRDGKDGREPNNWESIFGGSAW 149
Query: 157 QGNDDTGEDF-----QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
Q ++ TG+ + PD++ N V++ L + +NW + G DG+R D +
Sbjct: 150 QYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEMVNWW-LDKGIDGFRIDAI 201
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 19/137 (13%)
Query: 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133
+ P R Y + + G A+ ++++QAF GIK D+V NH EGG
Sbjct: 256 FSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTA-------------EGG 302
Query: 134 --TSDDRLDWGPSFICRG---DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188
TS D + RG Y GN ++ + + N Q + D +
Sbjct: 303 TWTSSDPTT-ATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLA 361
Query: 189 WLKTEIGFDGWRFDFVK 205
+ +G DG+RFD
Sbjct: 362 YWANTMGVDGFRFDLAS 378
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/352 (19%), Positives = 128/352 (36%), Gaps = 77/352 (21%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQG-----YMPG 77
++++ F + G + SL+ + L GI VWL P P+ +G Y
Sbjct: 7 IIYEAFARAYPGEKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIR 66
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD 137
Y++D G++ D K ++ + + L DMV+NH +
Sbjct: 67 DYYEIDLL-IGTKGDFKKFVKRAHELNMYVLMDMVLNH----------------AAVDNV 109
Query: 138 RLDWGPSFICRGDKEYSDGQGN-DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196
+ P + R D GN D+ D D+ N +++ + + M + E
Sbjct: 110 LVKKHPEWFLR------DENGNPTRKVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDV 163
Query: 197 DGWRFDFVKGYAP------------SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244
DG+R D V G P + ++ + + D + + +D ++Y DG
Sbjct: 164 DGFRCD-VAGLVPLDFWLQARKNLDPVKRLIWISETHDPYMYQAFD-ITYDYDGY----- 216
Query: 245 DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVT 304
+D+++ DF R++D + P G+I +
Sbjct: 217 ----YRFRDFIEGKNSLREYIDFL--------------RMQD-HMYPRGYI------KMR 251
Query: 305 FIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNVL 356
F++NHD + + +M A++ T G P + Y L L++
Sbjct: 252 FLENHDQPRVAKF--LSRESLMHWIAFLFTVKGVPLVHNGQEYALKEDLDIF 301
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ-SVAPQG---- 73
P + +NW +N+LK+++ D+ +AG T + P +Q QG
Sbjct: 1 PSIKSGTILHAWNWS--------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSM 52
Query: 74 ------YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117
Y P Y + G++ + K + A + GIK + D VINH T
Sbjct: 53 SNWYWLYQPTS-YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTT 101
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ-SVAPQG---- 73
P + +NW +N+LK+++ D+ +AG T + P +Q QG
Sbjct: 4 PSIKSGTILHAWNWS--------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSM 55
Query: 74 ------YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117
Y P Y + G++ + K + A + GIK + D VINH T
Sbjct: 56 SNWYWLYQPTS-YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTT 104
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR + + +
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLNVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITK 213
N +T PA P + NP V++ L D WM E G DGWR + + +
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLNVANEVDHAFWR 336
Query: 214 VY---MENTSPD-FAVGEKWDSLS 233
+ +++ +PD VGE W S
Sbjct: 337 EFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 21/227 (9%)
Query: 19 PFTSPALLFQGF--NWESSNKAG-GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM 75
P+ A+ +Q + +++ +N G G + L + L GI +W+ P S
Sbjct: 4 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRG 125
Y +YG+ D L+ +++G++ + D+VINH + A + +
Sbjct: 64 DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
Y + G + PSF E G + PD++ P++++EL
Sbjct: 124 DYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYA 183
Query: 186 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 226
+ WL + G G RF V Y+ P +T M+N + + G
Sbjct: 184 MLRFWL--DKGVSGMRFATVATYSKTPGFPDLTPEQMKNFAEAYTQG 228
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 17/169 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 227
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + + G DW F +
Sbjct: 228 EAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIEDFPVSKTSRT 281
Query: 159 NDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFD 202
N +T PA P + NP V++ L D WM E G DGWR D
Sbjct: 282 NYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLD 325
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 128/336 (38%), Gaps = 61/336 (18%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQ---SVAPQGYMPG---------RLYDLDA 84
GG + + N I D L+ G+T +W+P P + +V P G R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTN 110
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT-------AERKDGRGIY--CIFEGGTS 135
+GS D ++LI IK + D NH + ++GR +Y GG +
Sbjct: 111 PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGR-LYDNGTLLGGYT 169
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + D + D++ N + L + WL ++
Sbjct: 170 NDTNGY---FHHYGGTDFSSYE--DGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL--DM 222
Query: 195 GFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
G DG R D VK K +M++ P F GE W + + D N
Sbjct: 223 GIDGIRLDAVKHMPFGWQKNFMDSILSYRPVFTFGE-W----FLGTNEIDVNN------- 270
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGKPPGFIGILPQNAVTFI 306
+ +G ++ F F+ K + Q L + S FI + VTFI
Sbjct: 271 TYFANESGMSLLDFRFSQK-VRQVFRDNTDTMYGLDSMIQSTASDYNFI----NDMVTFI 325
Query: 307 DNHDTGSTQRLWPFPSDK-VMLGYAYILTHPGTPCI 341
DNHD R + S + V A+ LT G P I
Sbjct: 326 DNHD---MDRFYNGGSTRPVEQALAFTLTSRGVPAI 358
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 114/315 (36%), Gaps = 51/315 (16%)
Query: 52 LSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
++ G T +W P ++ A GY Y +D +YGS D L R++G+
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGL 215
Query: 108 LADMVINHRTAER---KDGRGIYCIFEGG----TSDDRLDWGPSFICRGDKEYSDGQGND 160
+ D+V++H KD I GG T R+ + + D E N
Sbjct: 216 IQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSE------NF 269
Query: 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----PSITKVY 215
G + PD++ NP V L W G G R D GY+ T+
Sbjct: 270 TKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEYTRRL 328
Query: 216 MENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG 271
M VGE+W + ++ GK AN DG+ L + DF
Sbjct: 329 MAEYPRLNMVGEEWSTRVPVVARWQRGK--ANFDGYTSHLP----------SLMDFP--- 373
Query: 272 ILQAAVQGELWRLKDSNGKPPGFIGI-------LPQNAVTFIDNHDTGSTQRLWPFPSDK 324
L A++ L + + NG + + PQN V F NHD D+
Sbjct: 374 -LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDR 432
Query: 325 VMLGYAYILTHPGTP 339
+ +++T P P
Sbjct: 433 WRMNLVFLMTMPRIP 447
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 20/220 (9%)
Query: 28 QGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY 87
QG + GG +K I L N GI ++L P S+ GY + + A +
Sbjct: 224 QGIAYPKDKYWGGDLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHV-ARRL 282
Query: 88 GSQADLKSLIQAFRQKGIKCLADMVINH------------RTAERKDGRGIYCIFEGGTS 135
G L+ ++ IK + D V +H R E + Y I +
Sbjct: 283 GGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVV 342
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA---PDIDHLNPRVQKELSD-WMNWLK 191
+++Y + E F P ++H NP+V++ + + + W
Sbjct: 343 SKEFLQILHSKSSWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFW-- 400
Query: 192 TEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWD 230
T G DG+R D G P + K E + + +GE D
Sbjct: 401 TNKGVDGFRMDVAHGVPPEVWKEVREALPKEKYLIGEVMD 440
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T+++L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T+++L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 114/315 (36%), Gaps = 51/315 (16%)
Query: 52 LSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
++ G T +W P ++ A GY Y +D +YGS D L R++G+
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGL 215
Query: 108 LADMVINHRTAER---KDGRGIYCIFEGG----TSDDRLDWGPSFICRGDKEYSDGQGND 160
+ D+V++H KD I GG T R+ + + D E N
Sbjct: 216 IQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSE------NF 269
Query: 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----PSITKVY 215
G + PD++ NP V L W G G R D GY+ T+
Sbjct: 270 TKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEYTRRL 328
Query: 216 MENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG 271
M VG++W + ++ GK AN DG+ L + DF
Sbjct: 329 MAEYPRLNMVGQEWSTRVPVVARWQRGK--ANFDGYTSHLP----------SLMDFP--- 373
Query: 272 ILQAAVQGELWRLKDSNGKPPGFIGIL-------PQNAVTFIDNHDTGSTQRLWPFPSDK 324
L A++ L + + NG + + PQN V F NHD D+
Sbjct: 374 -LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDR 432
Query: 325 VMLGYAYILTHPGTP 339
+ +++T P P
Sbjct: 433 WRMNLVFLMTMPRIP 447
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 114/315 (36%), Gaps = 51/315 (16%)
Query: 52 LSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
++ G T +W P ++ A GY Y +D +YGS D L R++G+
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGL 215
Query: 108 LADMVINHRTAER---KDGRGIYCIFEGG----TSDDRLDWGPSFICRGDKEYSDGQGND 160
+ D+V++H KD I GG T R+ + + D E N
Sbjct: 216 IQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSE------NF 269
Query: 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----PSITKVY 215
G + PD++ NP V L W G G R D GY+ T+
Sbjct: 270 TKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID-TYGYSDGAFLTEYTRRL 328
Query: 216 MENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG 271
M VG++W + ++ GK AN DG+ L + DF
Sbjct: 329 MAEYPRLNMVGQEWSTRVPVVARWQRGK--ANFDGYTSHLP----------SLMDFP--- 373
Query: 272 ILQAAVQGELWRLKDSNGKPPGFIGI-------LPQNAVTFIDNHDTGSTQRLWPFPSDK 324
L A++ L + + NG + + PQN V F NHD D+
Sbjct: 374 -LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDR 432
Query: 325 VMLGYAYILTHPGTP 339
+ +++T P P
Sbjct: 433 WRMNLVFLMTMPRIP 447
>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
N-Terminally Truncated Glucansucrase Gtfa
Length = 1049
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 163 GEDFQPAPDIDHLNPRVQKELSDWMNWL----KTEIGFDGWRFDFVKGYAPSITKVYMEN 218
G++F A DID+ NP VQ E +W+ +L D FD V+ AP + N
Sbjct: 238 GQEFLLANDIDNSNPVVQAEQLNWLYYLLNFGTITANNDQANFDSVRVDAPDNIDADLMN 297
Query: 219 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
+ D+ + +YG D DA + H L+DW A
Sbjct: 298 IAQDYF------NAAYGMD--SDAVSNKHINILEDWNHA 328
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 23/109 (21%)
Query: 68 SVAPQGYMPGRLYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMVINH--------- 115
S GY YDL S KYG+ DL++ IQA + G++ +AD V +
Sbjct: 726 STIDNGYAFTDRYDLGMSEPNKYGTDEDLRNAIQALHKAGLQVMADWVPDQIYNLPGKEV 785
Query: 116 RTAERKDGRG-----------IYCIFEGGTSDDRLDWGPSFICRGDKEY 153
T R D RG +Y + G + + +G +F+ + K Y
Sbjct: 786 ATVTRVDDRGNVWKDAIINNNLYVVNTIGGGEYQKKYGGAFLDKLQKLY 834
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 127/336 (37%), Gaps = 61/336 (18%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQ---SVAPQGYMPG---------RLYDLDA 84
GG + + N I D L+ G+T +W+ P + +V P G R +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTN 110
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT-------AERKDGRGIY--CIFEGGTS 135
+GS D ++LI IK + D NH + ++GR +Y GG +
Sbjct: 111 PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGR-LYDNGTLLGGYT 169
Query: 136 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 194
+D + F G ++S + D + D++ N + L + WL ++
Sbjct: 170 NDTNGY---FHHYGGTDFSSYE--DGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL--DM 222
Query: 195 GFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251
G DG R D VK K +M++ P F GE W + + D N
Sbjct: 223 GIDGIRLDAVKHMPFGWQKNFMDSILSYRPVFTFGE-W----FLGTNEIDVNN------- 270
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGKPPGFIGILPQNAVTFI 306
+ +G ++ F F+ K + Q L + S FI + VTFI
Sbjct: 271 TYFANESGMSLLDFRFSQK-VRQVFRDNTDTMYGLDSMIQSTASDYNFI----NDMVTFI 325
Query: 307 DNHDTGSTQRLWPFPSDK-VMLGYAYILTHPGTPCI 341
DNHD R + S + V A+ LT G P I
Sbjct: 326 DNHD---MDRFYNGGSTRPVEQALAFTLTSRGVPAI 358
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 55/320 (17%)
Query: 56 GITHVWLPPPSQSVAPQG------YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109
G V + PP++ + G Y P + + ++ G ++ + + G++
Sbjct: 36 GFGGVQISPPNEYLVADGRPWWERYQP--VSYIINTRSGDESAFTDMTRRCNDAGVRIYV 93
Query: 110 DMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGD----KEYSDGQGNDDTGE 164
D VINH T G G ++D D +++ GD E ++ Q D+
Sbjct: 94 DAVINHMTGMNGVGT------SGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRN 147
Query: 165 -DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---SITKVYMENTS 220
+ D++ + V+ L D+MN + ++G G+R D K +P S+ ++N +
Sbjct: 148 CELVGLRDLNQGSDYVRGVLIDYMNHM-IDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLN 206
Query: 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGI-------- 272
D+ + Y ++ + G A++ ++T G
Sbjct: 207 TDYGFADGARPFIY-----------------QEVIDLGGEAISKNEYTGFGCVLEFQFGV 249
Query: 273 -LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD---TGSTQRLWPFPSDKVMLG 328
L A QG +LK+ P + + +AV F+DNHD TG +Q L +
Sbjct: 250 SLGNAFQGGN-QLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMA 308
Query: 329 YAYILTHP-GTPCIVISVTY 347
A++L HP GT I+ S +
Sbjct: 309 IAFMLAHPYGTTRIMSSFDF 328
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 55/320 (17%)
Query: 56 GITHVWLPPPSQSVAPQG------YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109
G V + PP++ + G Y P + + ++ G+++ + + G++
Sbjct: 36 GFGGVQISPPNEYLVADGRPWWERYQP--VSYIINTRSGNESAFTDMTRRCNDAGVRIYV 93
Query: 110 DMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGD----KEYSDGQGNDDTGE 164
D VINH T G G ++D D +++ GD E ++ Q D+
Sbjct: 94 DAVINHMTGMNGVGT------SGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRN 147
Query: 165 -DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTS 220
+ D++ + V+ L D+MN + ++G G+R D K +P V ++N +
Sbjct: 148 CELVGLRDLNAGSDYVRGVLIDYMNHM-IDLGVAGFRVDAAKHMSPGDLSVIFDGLKNLN 206
Query: 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGI-------- 272
D+ + Y ++ + G A++ ++T G
Sbjct: 207 TDYGFADGARPFIY-----------------QEVIDLGGEAISKNEYTGFGCVLEFQFGV 249
Query: 273 -LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD---TGSTQRLWPFPSDKVMLG 328
L A QG +LK+ P + + +AV F+DNHD TG +Q L +
Sbjct: 250 SLGNAFQGGN-QLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMA 308
Query: 329 YAYILTHP-GTPCIVISVTY 347
A++L HP GT I+ S +
Sbjct: 309 IAFMLAHPYGTTRIMSSFDF 328
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ + G+ DL+ +I A
Sbjct: 119 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 177
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 178 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 237
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 238 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 292
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ + G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA-LGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDDRLDWG-----PSFI 146
+ GI + D + NH + E + + Y IF D+ D P
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQH 233
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
G + DG+ T FQ D+++ NP V + ++ M +L +G D R D V
Sbjct: 234 PGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMDAV 288
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 132/360 (36%), Gaps = 93/360 (25%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPP-----------PSQSVA-------------PQGY- 74
G + + + L G+TH+ L P S+S A PQ Y
Sbjct: 293 GTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYF 352
Query: 75 -MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133
+ G + A+LK LI ++G+ + D+V NH TA+ +FE
Sbjct: 353 ALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNH-TAKT-------YLFE-- 402
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193
D P++ ++ DG + G + + ++ L D + +L +E
Sbjct: 403 ------DIEPNYYHFMNE---DGSPRESFG-----GGRLGTTHAMSRRVLVDSIKYLTSE 448
Query: 194 IGFDGWRFDFVKGY-APSITKVYMENTSPD---FAVGEKWDSLSYGPDGKPDANQDGHRG 249
DG+RFD + + A +I Y E + + +GE W + G GKP +
Sbjct: 449 FKVDGFRFDMMGDHDAAAIELAYKEAKAINPNMIMIGEGWRTFQ-GDQGKP------VKP 501
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQA----------------AVQGELWRLKDSNGKPPG 293
A +DW+++ V F + L++ ++QG +K +P
Sbjct: 502 ADQDWMKST-DTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIK---AQPGN 557
Query: 294 FIGILPQNAVTFIDNHDTGSTQRLWPFPSDK------------VMLGYAYILTHPGTPCI 341
F P + V +I HD + + +K + LG ILT GT I
Sbjct: 558 FEADSPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFI 617
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 131/339 (38%), Gaps = 64/339 (18%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-ADFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSLSYG--PDG-KPDANQ---DGHRGALKDWVQAAGGA 261
AP K A+ +K +L+ P+G KP Q D +K G
Sbjct: 203 APGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDTGSTQRLWP 319
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSALKNWGEGAGF---MPSDRALVFVDNHDNQRGH---- 305
Query: 320 FPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNVLEI 358
G A ILT ++V + L HP +
Sbjct: 306 ------GAGGASILTFADARLYKMAVGFMLAHPYGFTRV 338
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 68 SVAPQGYMPGRLYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMV 112
S+ GY YDL S KYGS DL++ +QA + G++ +AD V
Sbjct: 720 SIIDNGYAFTDRYDLGXSTPNKYGSDEDLRNALQALHKAGLQAIADWV 767
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWR 200
G +F A DID+ NP VQ E +W+ +L E FDG R
Sbjct: 238 GAEFLLANDIDNSNPVVQAEELNWLYYLXNFGTITGNNPEANFDGIR 284
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-MPGRLYDLDASKYGSQADLKSLIQ 98
G + + +P L+ G+T + + P +Q +G+ G L S YG+ D K+ I
Sbjct: 151 GTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFID 210
Query: 99 AFRQKGIKCLADMVINH 115
A G+ + D+V+NH
Sbjct: 211 AAHGYGLSVVLDIVLNH 227
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 33/214 (15%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLI 97
GG + I L + G+ ++L P S + Y +D KY G+ D + L+
Sbjct: 261 GGDLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSID--KYLGTMEDFEKLV 318
Query: 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-----DRLDWGPSFICRGDKE 152
Q + IK + D+ ++H + + + EG S L P I +
Sbjct: 319 QVLHSRKIKIVLDITMHHTNP--CNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLK 376
Query: 153 YSDGQG-------NDDTGEDFQP----------APDIDHLNPRVQKELSDWMN-WLKTEI 194
Y DG+ D + +P +H NPR D W+
Sbjct: 377 YIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDK-- 434
Query: 195 GFDGWRFDFVKGYAPSITKVYME---NTSPDFAV 225
G DG+R D G S K Y E NT PDF V
Sbjct: 435 GIDGFRIDVAMGIHYSWMKQYYEYIKNTYPDFLV 468
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 68 SVAPQGYMPGRLYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMV 112
S+ GY YDL S KYGS DL++ +QA + G++ +AD V
Sbjct: 720 SIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWV 767
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 23/102 (22%)
Query: 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITK 213
G +F A DID+ NP VQ E +W+ +L E FDG R + V
Sbjct: 238 GAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVNAV--------- 288
Query: 214 VYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 254
+N D ++ + + +Y + + DA+ + H L+DW
Sbjct: 289 ---DNVDVDLLSIARDYFNAAYNME-QSDASANKHINILEDW 326
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 68 SVAPQGYMPGRLYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMV 112
S+ GY YDL S KYGS DL++ +QA + G++ +AD V
Sbjct: 720 SIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWV 767
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWR 200
G +F A DID+ NP VQ E +W+ +L E FDG R
Sbjct: 238 GAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIR 284
>pdb|3AIB|A Chain A, Crystal Structure Of Glucansucrase
pdb|3AIB|B Chain B, Crystal Structure Of Glucansucrase
pdb|3AIB|C Chain C, Crystal Structure Of Glucansucrase
pdb|3AIB|D Chain D, Crystal Structure Of Glucansucrase
pdb|3AIB|G Chain G, Crystal Structure Of Glucansucrase
pdb|3AIB|E Chain E, Crystal Structure Of Glucansucrase
pdb|3AIB|F Chain F, Crystal Structure Of Glucansucrase
pdb|3AIB|H Chain H, Crystal Structure Of Glucansucrase
pdb|3AIC|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
Length = 844
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 68 SVAPQGYMPGRLYDLDASK---YGSQADLKSLIQAFRQKGIKCLADMV 112
SV GY YDL SK YG+ DL I+A KGIK +AD V
Sbjct: 667 SVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWV 714
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFV 204
G +F A D+D+ NP VQ E +W+++L + FD R D V
Sbjct: 186 GYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAV 236
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 22/195 (11%)
Query: 52 LSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
++ G T +W P ++ A GY Y +D +YGS D L R++G
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGXGL 215
Query: 108 LADMVINHRTAER---KDGRGIYCIFEGG----TSDDRLDWGPSFICRGDKEYSDGQGND 160
+ D+V++H KD I GG T R+ + + D E N
Sbjct: 216 IQDVVLSHIGKHHWWXKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSE------NF 269
Query: 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS 220
G + PD++ NP V L W G G R D + Y
Sbjct: 270 TKGWFVEGXPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLX 329
Query: 221 PDF----AVGEKWDS 231
++ VGE+W +
Sbjct: 330 AEYPRLNXVGEEWST 344
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 31/175 (17%)
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
W P AP+G +D K +LK +I Q G++ + D+V NH +R
Sbjct: 290 WGYNPLHFFAPEGSYASNPHDPQTRK----TELKQMINTLHQHGLRVILDVVFNH-VYKR 344
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
++ FE P + R D+ G+ ++ TG DI +
Sbjct: 345 ENSP-----FEKTV--------PGYFFRHDE---CGKPSNGTG----VGNDIASERRMAR 384
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-----FAVGEKWD 230
K ++D + + E DG+RFD + G T +YM+ + GE WD
Sbjct: 385 KFIADCVVYWLEEYNVDGFRFDLL-GILDIDTVLYMKEKATKAKPGILLFGEGWD 438
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102
N + + L+ G+ +WL P ++ GY ++ + G+++D L+
Sbjct: 60 NGVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNP-QLGTESDFDRLVTEAHN 118
Query: 103 KGIKCLADMVINH 115
+GIK D V+NH
Sbjct: 119 RGIKIYLDYVMNH 131
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 52 LSNAGITHVWLPPPSQS---------VAPQGYMPGRLYDL---DASKYGSQADLKSLIQA 99
+N GIT + P +S GY YDL +KYG+ DL++ IQA
Sbjct: 862 FNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTKYGTDGDLRATIQA 921
Query: 100 FRQKGIKCLADMVINH 115
++ +AD+V N
Sbjct: 922 LHHANMQVMADVVDNQ 937
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWL---------KTEIGFDGWRFDFV 204
DF A D+D+ NP VQ E +W+++L + + FD R D V
Sbjct: 407 DFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRIDAV 455
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-------GSQADLK 94
++ ++N + G+TH++L P ++ PG + D Y G + +
Sbjct: 14 FSEIRNRLDYFVELGVTHLYLSPVLKA------RPGSTHGYDVVDYNTINDELGGEEEYI 67
Query: 95 SLIQAFRQKGIKCLADMVINHRTAER---------KDGRG--IYCIFEGGTSDDRL---- 139
LI + KG+ + D+V NH K GR Y F+ ++++
Sbjct: 68 RLIDEAKSKGLGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPI 127
Query: 140 --DWGPSFICRGDKEYSDGQGN----DDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189
D D+ Y D GN +D G ++ DI+ L EL DW ++
Sbjct: 128 LGDRNFKITYVNDEPYLDYYGNLFPINDEGRNY--LNDIEKLLKVQYYELVDWRDY 181
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 135/333 (40%), Gaps = 56/333 (16%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDTGSTQRLWP 319
V F + K G + GE + G+ GF +P + A+ F+DNHD +
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHSILT 309
Query: 320 FPSDKVM-LGYAYILTHP-GTPCIVISVTYPLF 350
F ++ + ++L HP G ++ S +P +
Sbjct: 310 FWDARLYKMAVGFMLAHPYGFTRVMSSYRWPRY 342
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-MPGRLYDLDASKYGSQADLKSLIQ 98
G Y + +P L G+T + + P + +G+ G + + YG DL +L+
Sbjct: 141 GTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLXALVD 200
Query: 99 AFRQKGIKCLADMVINH 115
A + G+ D+V NH
Sbjct: 201 AAHRLGLGVFLDVVYNH 217
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
A+ K+LI ++G+ + D+V NH TA+ +FE D P++
Sbjct: 255 AEFKNLINEIHKRGMGAILDVVYNH-TAK-------VDLFE--------DLEPNYY---- 294
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 209
+ D G T H+ R+ L D + +L DG+RFD + + A
Sbjct: 295 -HFMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLVDTYKVDGFRFDMMGDHDAA 350
Query: 210 SITKVYMENTSPD---FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 266
SI + Y + + +GE W + + G + P + A +DW++ VA F
Sbjct: 351 SIEEAYKAARALNPNLIMLGEGWRTYA-GDENMPT------KAADQDWMKHT-DTVAVFS 402
Query: 267 FTTKGILQAAVQGE------LWRLKDSN-------GKPPGFIGILPQNAVTFIDNHDTGS 313
+ L++ E +D N +P F P + + +I HD +
Sbjct: 403 DDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLT 462
Query: 314 -----TQRLWPFPSD---------KVMLGYAYILTHPGTPCI 341
Q + PS ++ LG +LT GTP I
Sbjct: 463 LFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 504
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 21/154 (13%)
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
+S+ G+ DLK L+ G++ L D+V +H + DG Y + +
Sbjct: 244 SSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHE-------- 295
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
S+ GD+ Y + ++ N V + L + + E FDG+RFD
Sbjct: 296 SYFHTGDRGY----------HKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDG 345
Query: 204 VKG---YAPSITKVYMENTSPDFAVGEKWDSLSY 234
V + I K + N F++ D++ Y
Sbjct: 346 VTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVY 379
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 52/309 (16%)
Query: 56 GITHVWLPPPSQSVAPQG----YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
G V + PP++ + Y P Y+L S+ G++A ++ G+ D
Sbjct: 28 GYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDT 85
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ--GNDDTGED---- 165
+INH A G G GT+ + SF +++ + N D G D
Sbjct: 86 LINHMAA----GSGT------GTAGNSFG-NKSFPIYSPQDFHESCTINNSDYGNDRYRV 134
Query: 166 ----FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 221
D+D + VQ ++ ++N L+ IG G+RFD K A S + M +
Sbjct: 135 QNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNG 193
Query: 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL 281
V ++ +Q G +++ G V F ++T+ + G L
Sbjct: 194 SPVVFQEV------------IDQGGEAVGASEYLST--GLVTEFKYSTE-LGNTFRNGSL 238
Query: 282 WRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GSTQRLWPFPSDKVM-LGYAYILTHP 336
L + G+ GF+ +AV F+DNHD G + F ++ L ++L +P
Sbjct: 239 AWLSNF-GEGWGFM--PSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYP 295
Query: 337 -GTPCIVIS 344
G P ++ S
Sbjct: 296 YGYPKVMSS 304
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 21/154 (13%)
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
+S+ G+ DLK L+ G++ L D+V +H + DG Y + +
Sbjct: 244 SSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHE-------- 295
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
S+ GD+ Y + ++ N V + L + + E FDG+RFD
Sbjct: 296 SYFHTGDRGY----------HKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDG 345
Query: 204 VKG---YAPSITKVYMENTSPDFAVGEKWDSLSY 234
V + I K + N F++ D++ Y
Sbjct: 346 VTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVY 379
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-MPGRLYDLDASKYGSQADLKSLIQ 98
G Y + +P L G+T + + P + +G+ G + + YG DL +L+
Sbjct: 141 GTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVD 200
Query: 99 AFRQKGIKCLADMVINH 115
A + G+ D+V NH
Sbjct: 201 AAHRLGLGVFLDVVYNH 217
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRL--YDLDASKYGSQADLKSLIQAFRQKGIKCLA 109
+ G +W+ P S PQ M + Y+ YG+ D +LI+ + G+K +
Sbjct: 49 IKELGADAIWISPFYDS--PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFIT 106
Query: 110 DMVINHRTAERK 121
D+VINH ++E +
Sbjct: 107 DLVINHCSSEHE 118
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 52/309 (16%)
Query: 56 GITHVWLPPPSQSVAPQG----YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
G V + PP++ + Y P Y+L S+ G++A ++ G+ D
Sbjct: 28 GYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDT 85
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ--GNDDTGED---- 165
+INH A G G GT+ + SF +++ + N D G D
Sbjct: 86 LINHMAA----GSGT------GTAGNSFG-NKSFPIYSPQDFHESCTINNSDYGNDRYRV 134
Query: 166 ----FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 221
D+D + VQ ++ ++N L+ IG G+RFD K A S + M +
Sbjct: 135 QNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNG 193
Query: 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL 281
V ++ +Q G +++ G V F ++T+ + G L
Sbjct: 194 SPVVFQEV------------IDQGGEAVGASEYLST--GLVTEFKYSTE-LGNTFRNGSL 238
Query: 282 WRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GSTQRLWPFPSDKVM-LGYAYILTHP 336
L + G+ GF+ +AV F+DNHD G + F ++ L ++L +P
Sbjct: 239 AWLSNF-GEGWGFM--PSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYP 295
Query: 337 -GTPCIVIS 344
G P ++ S
Sbjct: 296 YGYPRVMSS 304
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 52/309 (16%)
Query: 56 GITHVWLPPPSQSVAPQG----YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
G V + PP++ + Y P Y+L S+ G++A ++ G+ D
Sbjct: 28 GYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDT 85
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ--GNDDTGED---- 165
+INH A G G GT+ + SF +++ + N D G D
Sbjct: 86 LINHMAA----GSGT------GTAGNSFG-NKSFPIYSPQDFHESCTINNSDYGNDRYRV 134
Query: 166 ----FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 221
D+D + VQ ++ ++N L+ IG G+RFD K A S + M +
Sbjct: 135 QNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNG 193
Query: 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL 281
V ++ +Q G +++ G V F ++T+ + G L
Sbjct: 194 SPVVFQEV------------IDQGGEAVGASEYLST--GLVTEFKYSTE-LGNTFRNGSL 238
Query: 282 WRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GSTQRLWPFPSDKVM-LGYAYILTHP 336
L + G+ GF+ +AV F+DNHD G + F ++ L ++L +P
Sbjct: 239 AWLSNF-GEGWGFM--PSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYP 295
Query: 337 -GTPCIVIS 344
G P ++ S
Sbjct: 296 YGYPQVMSS 304
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 52/309 (16%)
Query: 56 GITHVWLPPPSQSVAPQG----YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
G V + PP++ + Y P Y+L S+ G++A ++ G+ D
Sbjct: 28 GYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDT 85
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ--GNDDTGED---- 165
+INH A G G GT+ + SF +++ + N D G D
Sbjct: 86 LINHMAA----GSGT------GTAGNSFG-NKSFPIYSPQDFHESCTINNSDYGNDRYRV 134
Query: 166 ----FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 221
D+D + VQ ++ ++N L+ IG G+RFD K A S + M +
Sbjct: 135 QNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNG 193
Query: 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL 281
V ++ +Q G +++ G V F ++T+ + G L
Sbjct: 194 SPVVFQEV------------IDQGGEAVGASEYLST--GLVTEFKYSTE-LGNTFRNGSL 238
Query: 282 WRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GSTQRLWPFPSDKVM-LGYAYILTHP 336
L + G+ GF+ +AV F+DNHD G + F ++ L ++L +P
Sbjct: 239 AWLSNF-GEGWGFM--PSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYP 295
Query: 337 -GTPCIVIS 344
G P ++ S
Sbjct: 296 YGYPKVMSS 304
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGRL--YDLDASKYGSQADLKSLIQAFRQKGIKCLA 109
+ G +W+ P S PQ M + Y+ YG+ D +LI+ + G+K +
Sbjct: 49 IKELGADAIWISPFYDS--PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFIT 106
Query: 110 DMVINHRTAERK 121
D+VINH ++E +
Sbjct: 107 DLVINHCSSEHE 118
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
A+ K+LI ++G+ + D+V NH TA+ +FE D P++
Sbjct: 562 AEFKNLINEIHKRGMGAILDVVYNH-TAK-------VDLFE--------DLEPNYY---- 601
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 209
+ D G T H+ R+ L D + +L DG+RFD + + A
Sbjct: 602 -HFMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLVDTYKVDGFRFDMMGDHDAA 657
Query: 210 SITKVYMENTSPD---FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 266
SI + Y + + +GE W + + G + P + A +DW++ VA F
Sbjct: 658 SIEEAYKAARALNPNLIMLGEGWRTYA-GDENMPT------KAADQDWMKHT-DTVAVFS 709
Query: 267 FTTKGILQAAVQGE------LWRLKDSN-------GKPPGFIGILPQNAVTFIDNHDTGS 313
+ L++ E +D N +P F P + + +I HD +
Sbjct: 710 DDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLT 769
Query: 314 -----TQRLWPFPSD---------KVMLGYAYILTHPGTPCI 341
Q + PS ++ LG +LT GTP I
Sbjct: 770 LFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 811
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
A+ K+LI ++G+ + D+V NH TA+ +FE D P++
Sbjct: 256 AEFKNLINEIHKRGMGAILDVVYNH-TAK-------VDLFE--------DLEPNYY---- 295
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 209
+ D G T H+ R+ L D + +L DG+RFD + + A
Sbjct: 296 -HFMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLVDTYKVDGFRFDMMGDHDAA 351
Query: 210 SITKVYMENTSPD---FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 266
SI + Y + + +GE W + + G + P + A +DW++ VA F
Sbjct: 352 SIEEAYKAARALNPNLIMLGEGWRTYA-GDENMPT------KAADQDWMKHT-DTVAVFS 403
Query: 267 FTTKGILQAAVQGE------LWRLKDSN-------GKPPGFIGILPQNAVTFIDNHDTGS 313
+ L++ E +D N +P F P + + +I HD +
Sbjct: 404 DDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDDLT 463
Query: 314 -----TQRLWPFPSD---------KVMLGYAYILTHPGTPCI 341
Q + PS ++ LG +LT GTP I
Sbjct: 464 LFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 505
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 35 SNKAGGWYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASK--YGS 89
+++ G ++ + L G+ ++ L P P + GY + D A + G+
Sbjct: 103 TDRFAGTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYA---VQDYRAVRPDLGT 159
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119
DL +L +A R +GI + D+V+NH E
Sbjct: 160 MDDLSALARALRGRGISLVLDLVLNHVARE 189
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTAVMSSYRWP 345
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102
N + + L+ G+ +WL P + GY ++ + G+++D L+
Sbjct: 60 NGVTQKLDYLNQLGVKALWLSPIHPCXSYHGYDVTDYTKVNP-QLGTESDFDRLVTEAHN 118
Query: 103 KGIKCLADMVINH 115
+GIK D V NH
Sbjct: 119 RGIKIYLDYVXNH 131
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 34/172 (19%)
Query: 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----ASKYGSQADLKSLIQAFRQK 103
S P L G+++ W GY P ++ L S + + + I+A +
Sbjct: 206 SEPRLQRMGLSNYW-----------GYNPVAMFALHPAYACSPETALDEFRDAIKALHKA 254
Query: 104 GIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTG 163
GI+ + D+V+NH DG +F D+R + R D +Y + G +T
Sbjct: 255 GIEVILDIVLNHSAELDLDGP----LFSLRGIDNR----SYYWIREDGDYHNWTGCGNT- 305
Query: 164 EDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF--VKGYAPSITK 213
++ +P V S + + DG+RFD V G P +
Sbjct: 306 --------LNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQ 349
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 122/309 (39%), Gaps = 52/309 (16%)
Query: 56 GITHVWLPPPSQSVAPQG----YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111
G V + PP++ + Y P Y+L S+ G++A ++ G+ D
Sbjct: 28 GYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDT 85
Query: 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ--GNDDTGED---- 165
+INH A G G GT+ + SF +++ + N D G D
Sbjct: 86 LINHMAA----GSGT------GTAGNSFG-NKSFPIYSPQDFHESCTINNSDYGNDRYRV 134
Query: 166 ----FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 221
D+D + VQ ++ ++N L+ IG G+RF+ K A S + M +
Sbjct: 135 QNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFNASKHVAASDIQSLMAKVNG 193
Query: 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL 281
V ++ +Q G +++ G V F ++T+ + G L
Sbjct: 194 SPVVFQEV------------IDQGGEAVGASEYLST--GLVTEFKYSTE-LGNTFRNGSL 238
Query: 282 WRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GSTQRLWPFPSDKVM-LGYAYILTHP 336
L + G+ GF+ +AV F+DNHD G + F ++ L ++L +P
Sbjct: 239 AWLSNF-GEGWGFM--PSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYP 295
Query: 337 -GTPCIVIS 344
G P ++ S
Sbjct: 296 YGYPKVMSS 304
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 27/192 (14%)
Query: 64 PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL--ADMVINHRTAERK 121
P + VA +GY G L + G+ ADL +L +AF++K + L ADMV + E
Sbjct: 112 PRPEDVAKEGYA-GLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA 170
Query: 122 -DGRGIYCIFEGGTSDDRLDWGPSFI-------------------CRGDKEYSDGQG--N 159
+ G+ G G F+ R K +G+
Sbjct: 171 LEAMGVDAAASGSQXGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWT 230
Query: 160 DDTGEDFQPAPDIDHLNPRVQKELS--DWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME 217
A ++ + PR+++ L+ W N L +G +G K ++P++ Y+
Sbjct: 231 PAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLP 290
Query: 218 NTSPDFAVGEKW 229
P V E +
Sbjct: 291 EGVPYARVKEAF 302
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTQVMSSYRWP 345
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 130/338 (38%), Gaps = 65/338 (19%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEKWDSLSYGPD--GKPDANQDGHRGALKDWVQAAGG 260
P K ++ S F G K D G+P + D G
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQAVIDLGGEPIKSSD----------YFGNG 251
Query: 261 AVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT-------- 311
V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 252 RVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGAGG 309
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 310 ASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 134/341 (39%), Gaps = 71/341 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT----- 311
G V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHG 306
Query: 312 ---GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 307 AGGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 65/340 (19%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPLWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT-------- 311
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHGAGG 309
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350
S W K+ +G ++L HP G ++ S +P +
Sbjct: 310 ASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWPRY 347
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 65/340 (19%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT-------- 311
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHGAGG 309
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350
S W K+ +G ++L HP G ++ S +P +
Sbjct: 310 ASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWPRY 347
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 131/342 (38%), Gaps = 69/342 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGH-RGALKDWVQAA 258
P K ++ S F G K + + G G+P + D G + +W A
Sbjct: 203 WPGDIKAILDKLHNLNSNWFPEGSKPFIYQEVIDLG--GEPIKSSDYFGNGRVTEWKYGA 260
Query: 259 GGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT------ 311
+ + + GE W G +P + A+ F+DNHD
Sbjct: 261 KLGTVIRKWNGEKMSYLKNWGEGW-------------GFMPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350
S W K+ +G ++L HP G ++ S +P +
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWPRY 347
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 65/340 (19%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPAWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT-------- 311
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHGAGG 309
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350
S W K+ +G ++L HP G ++ S +P +
Sbjct: 310 ASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWPRY 347
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 65/340 (19%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT-------- 311
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHGAGG 309
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350
S W K+ +G ++L HP G ++ S +P +
Sbjct: 310 ASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWPRY 347
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINHR 116
+GS+ D SL+Q+ ++K I+ + D+ N+R
Sbjct: 78 FGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 131/339 (38%), Gaps = 64/339 (18%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E++ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDTGSTQRLWP 319
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGH---- 305
Query: 320 FPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNVLEI 358
G A ILT ++V + L HP +
Sbjct: 306 ------GAGGASILTFADARLYKMAVGFMLAHPYGFTRV 338
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINHR 116
+GS+ D SL+Q+ ++K I+ + D+ N+R
Sbjct: 78 FGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117
+YG+ AD K+L + G+K + D+V NH +
Sbjct: 79 EYGTLADFKALTDRAHELGMKVMLDIVYNHTS 110
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLKSLI 97
G + + + L + GIT + + P +Q + GY LY + S YG + L+
Sbjct: 116 GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS-YGGPEGFRKLV 174
Query: 98 QAFRQKGIKCLADMVINH 115
+KG+ + D+V NH
Sbjct: 175 DEAHKKGLGVILDVVYNH 192
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLKSLI 97
G + + + L + GIT + + P +Q + GY LY + S YG + L+
Sbjct: 116 GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS-YGGPEGFRKLV 174
Query: 98 QAFRQKGIKCLADMVINH 115
+KG+ + D+V NH
Sbjct: 175 DEAHKKGLGVILDVVYNH 192
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLKSLI 97
G + + + L + GIT + + P +Q + GY LY + S YG + L+
Sbjct: 116 GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS-YGGPEGFRKLV 174
Query: 98 QAFRQKGIKCLADMVINH 115
+KG+ + D+V NH
Sbjct: 175 DEAHKKGLGVILDVVYNH 192
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLKSLI 97
G + + + L + GIT + + P +Q + GY LY + S YG + L+
Sbjct: 116 GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS-YGGPEGFRKLV 174
Query: 98 QAFRQKGIKCLADMVINH 115
+KG+ + D+V NH
Sbjct: 175 DEAHKKGLGVILDVVYNH 192
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLKSLI 97
G + + + L + GIT + + P +Q + GY LY + S YG + L+
Sbjct: 116 GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS-YGGPEGFRKLV 174
Query: 98 QAFRQKGIKCLADMVINH 115
+KG+ + D+V NH
Sbjct: 175 DEAHKKGLGVILDVVYNH 192
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNH+
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHNNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 129 IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188
I +GG D G IC G+ G++ G+ HL P V ++ D+ N
Sbjct: 168 ILKGGRDTCHGDSGGPLICNGEMHGIVAGGSEPCGQ---------HLKPAVYTKVFDYNN 218
Query: 189 WLKTEIG 195
W+++ I
Sbjct: 219 WIQSIIA 225
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+D+HD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDSHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 317
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 253 DWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 312
DW+ G V A D K L+ + E+ ++ DS+G+P F G ++D +D G
Sbjct: 198 DWI--VGTVVLALDAIKKNGLEGGL-AEVVKVLDSDGRPTPFFGRNIHENCPYLDKYDEG 254
Query: 313 STQRLWPFPSDKVMLGY 329
+ +DKV Y
Sbjct: 255 VMSATF---TDKVGCRY 268
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G++ D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFQLDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 135/340 (39%), Gaps = 65/340 (19%)
Query: 52 LSNAGITHVWLPPPSQSVAPQG--------YMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
L+ G V + PP+++VA Y P Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKL-CTRSGNEDEFRNMVTRCNNV 89
Query: 104 GIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 90 GVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCKT 143
Query: 161 DTG--EDFQPAPDIDHLN-----------PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
+G E+ A + V+ +++++MN L +IG G+R D K
Sbjct: 144 GSGDIENMNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHL-IDIGVAGFRIDASKHM 202
Query: 208 APSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ---DGHRGALKDWVQAAGGA 261
P K A+ +K +L ++ P+G KP Q D +K G
Sbjct: 203 WPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQEVIDLGGEPIKSSDYFGNGR 252
Query: 262 VAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQN-AVTFIDNHDT-------- 311
V F + K G + GE + G+ GF +P + A+ F+DNHD
Sbjct: 253 VTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPSDRALVFVDNHDNQRGHGAGG 309
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350
S W K+ +G ++L HP G ++ S +P +
Sbjct: 310 ASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWPRY 347
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 131/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+R K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFRLAASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 131/340 (38%), Gaps = 69/340 (20%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L+ G V + PP+++VA Y P R Y L ++ G++ + ++++
Sbjct: 32 LAPKGFGGVQVSPPNENVAI--YNPFRPWWERYQPVSYKL-CTRSGNEDEFRNMVTRCNN 88
Query: 103 KGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159
G++ D VINH G C F G+ D P+ G +++DG+
Sbjct: 89 VGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD-----FPAVPYSG-WDFNDGKCK 142
Query: 160 DDTG--EDFQPAP-----------DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+G E++ A D+ V+ +++++MN L +IG G+ D K
Sbjct: 143 TGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHL-IDIGVAGFALDASKH 201
Query: 207 YAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGKPDANQDGHRGALKDWVQAA 258
P K ++ S F G K + + G G+P + D
Sbjct: 202 MWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GEPIKSSD----------YFG 249
Query: 259 GGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT------ 311
G V F + K G + GE + G+ GF + A+ F+DNHD
Sbjct: 250 NGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF--VPSDRALVFVDNHDNQRGHGA 307
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYP 348
S W K+ +G ++L HP G ++ S +P
Sbjct: 308 GGASILTFWDARLYKMAVG--FMLAHPYGFTRVMSSYRWP 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,875,393
Number of Sequences: 62578
Number of extensions: 615859
Number of successful extensions: 1532
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 258
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)