Query 018278
Match_columns 358
No_of_seqs 175 out of 1261
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00196 alpha-amylase; Provis 100.0 9E-72 1.9E-76 528.9 33.9 343 7-349 6-353 (428)
2 PLN02361 alpha-amylase 100.0 2.6E-67 5.7E-72 492.6 31.1 317 22-349 10-327 (401)
3 PLN02784 alpha-amylase 100.0 4.4E-65 9.5E-70 501.1 33.1 319 21-348 500-819 (894)
4 PRK09441 cytoplasmic alpha-amy 100.0 1.8E-61 3.9E-66 470.9 31.4 310 22-352 2-374 (479)
5 PRK10785 maltodextrin glucosid 100.0 1.5E-61 3.2E-66 480.6 20.9 302 15-352 113-489 (598)
6 TIGR02456 treS_nterm trehalose 100.0 2.5E-59 5.5E-64 461.2 26.0 312 19-351 1-379 (539)
7 TIGR02403 trehalose_treC alpha 100.0 9.7E-59 2.1E-63 456.2 26.4 312 20-352 1-365 (543)
8 PRK09505 malS alpha-amylase; R 100.0 1.1E-58 2.4E-63 459.3 25.2 308 15-351 181-606 (683)
9 PRK10933 trehalose-6-phosphate 100.0 1.7E-58 3.7E-63 453.7 26.1 315 16-351 3-370 (551)
10 PF00128 Alpha-amylase: Alpha 100.0 2.1E-59 4.5E-64 434.3 12.6 292 40-353 1-314 (316)
11 TIGR02402 trehalose_TreZ malto 100.0 1.1E-51 2.3E-56 405.0 23.1 296 22-355 92-425 (542)
12 TIGR02100 glgX_debranch glycog 100.0 5.2E-50 1.1E-54 400.6 23.7 298 22-352 154-529 (688)
13 TIGR02104 pulA_typeI pullulana 100.0 6.4E-50 1.4E-54 398.7 20.8 297 24-353 128-490 (605)
14 PRK13840 sucrose phosphorylase 100.0 2.9E-48 6.3E-53 369.9 24.4 295 22-353 2-388 (495)
15 PRK03705 glycogen debranching 100.0 1.5E-48 3.2E-53 387.4 22.6 297 22-353 149-524 (658)
16 TIGR01515 branching_enzym alph 100.0 2.6E-48 5.6E-53 387.0 23.7 291 23-354 138-469 (613)
17 TIGR03852 sucrose_gtfA sucrose 100.0 1.3E-48 2.9E-53 370.0 20.0 293 23-353 1-378 (470)
18 PRK12313 glycogen branching en 100.0 2.5E-48 5.5E-53 389.5 22.5 293 22-353 146-481 (633)
19 PRK14510 putative bifunctional 100.0 1.4E-46 2.9E-51 395.0 24.4 296 23-354 158-533 (1221)
20 PRK05402 glycogen branching en 100.0 9.3E-47 2E-51 382.4 21.4 293 23-354 241-578 (726)
21 TIGR02102 pullulan_Gpos pullul 100.0 3.7E-46 8.1E-51 383.1 25.3 300 22-354 450-817 (1111)
22 PRK14706 glycogen branching en 100.0 1.3E-45 2.9E-50 365.6 25.8 291 24-354 145-477 (639)
23 COG0366 AmyA Glycosidases [Car 100.0 1.6E-45 3.6E-50 363.5 17.2 321 24-355 1-364 (505)
24 KOG0471 Alpha-amylase [Carbohy 100.0 7.6E-45 1.7E-49 355.6 17.2 326 17-352 11-395 (545)
25 PRK12568 glycogen branching en 100.0 7.2E-44 1.6E-48 352.6 22.9 293 24-355 247-583 (730)
26 PLN02960 alpha-amylase 100.0 9E-43 1.9E-47 345.2 24.7 190 20-231 392-614 (897)
27 PRK14705 glycogen branching en 100.0 5.6E-43 1.2E-47 361.7 21.5 285 23-355 747-1079(1224)
28 COG0296 GlgB 1,4-alpha-glucan 100.0 2.8E-41 6.1E-46 327.0 21.5 285 25-356 150-479 (628)
29 TIGR02455 TreS_stutzeri trehal 100.0 1.7E-40 3.7E-45 317.9 21.4 266 24-311 52-404 (688)
30 PLN02447 1,4-alpha-glucan-bran 100.0 5.4E-40 1.2E-44 325.7 22.5 284 23-350 229-579 (758)
31 TIGR02103 pullul_strch alpha-1 100.0 5.3E-40 1.2E-44 331.9 20.0 298 37-355 273-714 (898)
32 COG1523 PulA Type II secretory 100.0 2.5E-39 5.3E-44 318.4 14.7 298 22-354 170-551 (697)
33 PLN02877 alpha-amylase/limit d 100.0 5.5E-38 1.2E-42 316.5 23.2 314 23-355 339-783 (970)
34 KOG0470 1,4-alpha-glucan branc 100.0 3E-34 6.5E-39 275.7 15.7 148 39-208 251-408 (757)
35 KOG2212 Alpha-amylase [Carbohy 100.0 4.5E-31 9.8E-36 232.5 19.5 296 21-349 26-362 (504)
36 TIGR02401 trehalose_TreY malto 100.0 2.2E-30 4.7E-35 258.5 19.9 192 39-231 12-287 (825)
37 smart00642 Aamy Alpha-amylase 100.0 4.1E-29 8.8E-34 208.7 10.4 93 24-118 1-97 (166)
38 PLN03244 alpha-amylase; Provis 100.0 2.8E-28 6E-33 238.2 17.5 135 75-231 426-589 (872)
39 PRK14511 maltooligosyl trehalo 99.9 2.3E-24 5E-29 216.4 17.2 191 39-230 16-331 (879)
40 PRK14507 putative bifunctional 99.9 8.4E-22 1.8E-26 209.1 17.7 79 39-118 754-834 (1693)
41 COG3280 TreY Maltooligosyl tre 99.8 6.9E-19 1.5E-23 169.8 13.5 80 39-119 15-96 (889)
42 TIGR01531 glyc_debranch glycog 99.8 8.7E-18 1.9E-22 173.9 21.0 82 39-121 128-215 (1464)
43 PF14872 GHL5: Hypothetical gl 99.4 3.1E-11 6.8E-16 115.6 18.6 151 21-207 176-393 (811)
44 PF14701 hDGE_amylase: glucano 99.0 1.1E-09 2.4E-14 102.8 7.9 95 22-121 5-107 (423)
45 PF02324 Glyco_hydro_70: Glyco 98.9 1.2E-08 2.7E-13 98.9 10.6 170 164-351 138-375 (809)
46 PF02638 DUF187: Glycosyl hydr 98.8 2.1E-08 4.5E-13 92.5 10.7 139 41-203 17-162 (311)
47 PF02324 Glyco_hydro_70: Glyco 98.8 6.9E-09 1.5E-13 100.6 7.4 96 22-118 563-674 (809)
48 PF14871 GHL6: Hypothetical gl 98.6 5.1E-07 1.1E-11 72.2 10.7 129 46-203 3-132 (132)
49 PRK14508 4-alpha-glucanotransf 98.5 3.9E-05 8.4E-10 75.1 21.7 60 22-82 6-67 (497)
50 COG1649 Uncharacterized protei 98.3 3E-06 6.6E-11 79.7 8.6 141 40-207 61-211 (418)
51 PLN02635 disproportionating en 98.3 0.00019 4.1E-09 70.6 21.3 57 23-80 30-92 (538)
52 cd06593 GH31_xylosidase_YicI Y 98.1 4.8E-05 1E-09 70.4 12.0 137 40-210 21-164 (308)
53 PRK14510 putative bifunctional 98.0 0.00026 5.7E-09 76.5 18.1 46 23-68 725-771 (1221)
54 KOG3625 Alpha amylase [Carbohy 97.9 8.8E-06 1.9E-10 81.6 4.5 82 39-121 138-227 (1521)
55 PF02446 Glyco_hydro_77: 4-alp 97.9 4.7E-05 1E-09 75.0 8.9 46 38-83 13-61 (496)
56 cd06592 GH31_glucosidase_KIAA1 97.9 0.00024 5.1E-09 65.6 12.9 134 40-206 27-166 (303)
57 PF02065 Melibiase: Melibiase; 97.8 0.0003 6.6E-09 66.8 12.8 136 42-207 57-195 (394)
58 TIGR02401 trehalose_TreY malto 97.5 2.5E-05 5.4E-10 79.8 0.5 54 303-356 617-681 (825)
59 cd06599 GH31_glycosidase_Aec37 97.5 0.0006 1.3E-08 63.3 9.4 133 43-205 29-168 (317)
60 cd06597 GH31_transferase_CtsY 97.5 0.00029 6.3E-09 66.0 7.3 151 41-206 22-188 (340)
61 PF13200 DUF4015: Putative gly 97.5 0.00096 2.1E-08 61.2 10.2 135 40-207 10-149 (316)
62 PRK14582 pgaB outer membrane N 97.5 0.0018 3.9E-08 65.4 12.9 150 21-204 311-467 (671)
63 PRK14507 putative bifunctional 97.5 0.0039 8.5E-08 68.7 16.3 43 24-66 174-217 (1693)
64 cd06594 GH31_glucosidase_YihQ 97.3 0.0011 2.3E-08 61.6 8.1 138 41-208 21-169 (317)
65 cd06591 GH31_xylosidase_XylS X 97.2 0.0016 3.4E-08 60.6 8.2 132 41-205 22-159 (319)
66 PF13199 Glyco_hydro_66: Glyco 97.1 0.0062 1.3E-07 60.3 11.6 147 41-206 116-269 (559)
67 cd06600 GH31_MGAM-like This fa 96.9 0.0034 7.3E-08 58.3 8.0 132 40-206 21-161 (317)
68 PRK10426 alpha-glucosidase; Pr 96.9 0.013 2.8E-07 59.6 12.3 137 42-208 220-366 (635)
69 TIGR00217 malQ 4-alpha-glucano 96.9 0.041 8.8E-07 54.4 15.4 46 22-68 15-61 (513)
70 PRK10658 putative alpha-glucos 96.7 0.0047 1E-07 62.9 8.0 91 92-208 326-421 (665)
71 PRK14511 maltooligosyl trehalo 96.7 0.001 2.2E-08 68.7 2.7 30 327-356 705-737 (879)
72 cd06602 GH31_MGAM_SI_GAA This 96.6 0.0099 2.2E-07 55.8 8.3 143 41-207 22-167 (339)
73 PF14488 DUF4434: Domain of un 96.5 0.014 3E-07 48.8 7.9 87 24-115 3-89 (166)
74 cd06598 GH31_transferase_CtsZ 96.5 0.0099 2.1E-07 55.3 7.8 133 41-205 22-164 (317)
75 PRK11052 malQ 4-alpha-glucanot 96.4 0.023 5E-07 58.1 10.5 44 24-67 145-189 (695)
76 cd06604 GH31_glucosidase_II_Ma 96.4 0.011 2.3E-07 55.6 7.6 129 41-205 22-159 (339)
77 PF01055 Glyco_hydro_31: Glyco 96.1 0.0078 1.7E-07 58.7 4.9 139 41-207 41-182 (441)
78 cd06542 GH18_EndoS-like Endo-b 95.9 0.04 8.8E-07 49.4 8.5 65 89-204 49-113 (255)
79 cd06562 GH20_HexA_HexB-like Be 95.9 0.082 1.8E-06 49.8 10.6 125 42-194 17-148 (348)
80 PF07745 Glyco_hydro_53: Glyco 95.6 0.048 1E-06 50.6 7.7 56 46-115 27-82 (332)
81 COG1501 Alpha-glucosidases, fa 95.6 0.053 1.2E-06 56.1 8.6 90 93-208 323-418 (772)
82 cd06595 GH31_xylosidase_XylS-l 95.3 0.044 9.5E-07 50.3 6.3 129 41-204 23-158 (292)
83 PF00150 Cellulase: Cellulase 95.2 0.023 5E-07 51.4 4.4 78 24-114 7-85 (281)
84 COG1640 MalQ 4-alpha-glucanotr 95.2 0.32 7E-06 47.7 12.3 45 24-68 15-61 (520)
85 PLN02950 4-alpha-glucanotransf 95.0 0.075 1.6E-06 56.1 7.6 77 17-94 256-339 (909)
86 cd06603 GH31_GANC_GANAB_alpha 94.9 0.09 2E-06 49.4 7.3 136 41-205 22-162 (339)
87 KOG1065 Maltase glucoamylase a 94.9 0.17 3.8E-06 51.6 9.6 135 40-204 308-447 (805)
88 PLN03236 4-alpha-glucanotransf 94.7 0.096 2.1E-06 53.6 7.5 76 18-94 57-139 (745)
89 cd06568 GH20_SpHex_like A subg 94.7 0.41 8.9E-06 44.7 11.2 126 41-194 16-153 (329)
90 cd06569 GH20_Sm-chitobiase-lik 94.7 0.35 7.7E-06 47.1 11.0 77 41-118 20-125 (445)
91 COG3589 Uncharacterized conser 94.7 0.058 1.3E-06 49.2 5.1 58 42-114 15-72 (360)
92 PLN02763 hydrolase, hydrolyzin 94.6 0.085 1.9E-06 55.6 6.9 32 172-204 304-335 (978)
93 PRK09936 hypothetical protein; 94.5 0.16 3.4E-06 45.7 7.4 172 19-221 18-200 (296)
94 PF05913 DUF871: Bacterial pro 94.4 0.066 1.4E-06 50.3 5.1 60 40-114 11-70 (357)
95 cd06563 GH20_chitobiase-like T 94.2 0.48 1E-05 44.8 10.6 126 42-194 17-164 (357)
96 cd06601 GH31_lyase_GLase GLase 94.2 0.18 4E-06 47.1 7.6 109 41-204 22-132 (332)
97 cd02742 GH20_hexosaminidase Be 94.1 0.19 4E-06 46.5 7.5 123 41-194 14-147 (303)
98 cd06564 GH20_DspB_LnbB-like Gl 94.0 0.43 9.3E-06 44.5 9.8 119 41-195 15-155 (326)
99 PRK11052 malQ 4-alpha-glucanot 93.7 0.16 3.4E-06 52.1 6.7 56 40-97 165-223 (695)
100 cd06565 GH20_GcnA-like Glycosy 93.7 0.55 1.2E-05 43.3 9.7 115 41-195 15-131 (301)
101 cd06570 GH20_chitobiase-like_1 93.7 0.65 1.4E-05 43.0 10.1 124 42-193 17-145 (311)
102 TIGR01370 cysRS possible cyste 93.7 0.55 1.2E-05 43.4 9.5 35 172-207 138-172 (315)
103 COG3867 Arabinogalactan endo-1 93.6 0.32 6.9E-06 43.8 7.4 55 47-112 67-125 (403)
104 cd02875 GH18_chitobiase Chitob 93.1 0.25 5.3E-06 46.8 6.6 31 174-204 91-121 (358)
105 cd02871 GH18_chitinase_D-like 93.1 0.51 1.1E-05 43.7 8.6 64 88-205 57-120 (312)
106 cd06545 GH18_3CO4_chitinase Th 92.9 0.47 1E-05 42.5 7.7 30 175-204 79-108 (253)
107 cd06589 GH31 The enzymes of gl 92.3 1.6 3.4E-05 39.5 10.4 64 40-112 21-87 (265)
108 PF00728 Glyco_hydro_20: Glyco 92.1 0.11 2.5E-06 48.8 2.9 136 41-201 16-162 (351)
109 PF10566 Glyco_hydro_97: Glyco 92.0 3.1 6.8E-05 37.6 11.7 65 39-111 28-93 (273)
110 PF14883 GHL13: Hypothetical g 91.8 4.1 8.8E-05 36.9 12.0 123 44-201 18-142 (294)
111 PF02449 Glyco_hydro_42: Beta- 90.7 0.66 1.4E-05 44.2 6.5 123 43-206 10-139 (374)
112 PF03198 Glyco_hydro_72: Gluca 90.4 0.82 1.8E-05 41.8 6.5 54 45-120 55-108 (314)
113 PF14701 hDGE_amylase: glucano 90.2 0.54 1.2E-05 45.0 5.4 52 166-219 360-416 (423)
114 smart00812 Alpha_L_fucos Alpha 90.1 3.4 7.5E-05 39.4 10.7 139 47-229 85-235 (384)
115 PLN03059 beta-galactosidase; P 89.9 1.6 3.5E-05 45.4 8.7 59 43-111 59-118 (840)
116 KOG3625 Alpha amylase [Carbohy 89.8 0.85 1.8E-05 47.2 6.5 65 166-232 495-568 (1521)
117 TIGR03356 BGL beta-galactosida 89.8 1.2 2.6E-05 43.3 7.5 65 40-112 51-115 (427)
118 TIGR03849 arch_ComA phosphosul 89.0 1.4 3.1E-05 38.8 6.6 54 39-111 60-120 (237)
119 COG1306 Uncharacterized conser 88.8 3.3 7.3E-05 37.4 8.8 140 43-206 77-220 (400)
120 PLN03236 4-alpha-glucanotransf 87.9 1.1 2.4E-05 46.2 6.0 24 91-114 274-297 (745)
121 PF01301 Glyco_hydro_35: Glyco 86.8 0.54 1.2E-05 43.7 2.9 61 43-113 24-85 (319)
122 PF13380 CoA_binding_2: CoA bi 86.1 1.9 4.1E-05 33.6 5.2 42 43-109 66-107 (116)
123 PF01120 Alpha_L_fucos: Alpha- 85.7 3.3 7.3E-05 38.9 7.7 144 47-229 95-245 (346)
124 PLN02950 4-alpha-glucanotransf 85.4 2.8 6E-05 44.6 7.5 24 91-114 461-484 (909)
125 COG2342 Predicted extracellula 84.1 28 0.0006 31.4 11.9 123 42-207 29-151 (300)
126 COG2730 BglC Endoglucanase [Ca 83.1 2.6 5.7E-05 40.6 5.8 59 45-111 75-136 (407)
127 PF13204 DUF4038: Protein of u 83.1 3.6 7.8E-05 37.7 6.5 70 41-115 28-110 (289)
128 PRK15447 putative protease; Pr 82.6 5.1 0.00011 36.9 7.3 58 30-110 10-67 (301)
129 PRK09856 fructoselysine 3-epim 82.6 21 0.00045 32.1 11.3 51 44-108 14-64 (275)
130 cd02874 GH18_CFLE_spore_hydrol 82.4 5.7 0.00012 36.7 7.6 31 175-205 83-113 (313)
131 PRK01060 endonuclease IV; Prov 82.1 16 0.00035 33.0 10.4 53 42-107 11-63 (281)
132 PRK14581 hmsF outer membrane N 81.7 24 0.00051 36.3 12.1 131 43-203 334-466 (672)
133 PRK13210 putative L-xylulose 5 81.5 23 0.0005 31.9 11.2 54 44-109 17-70 (284)
134 cd06547 GH85_ENGase Endo-beta- 80.9 3 6.5E-05 39.1 5.2 31 177-207 85-115 (339)
135 PF02679 ComA: (2R)-phospho-3- 80.5 3.6 7.9E-05 36.5 5.2 55 39-112 73-134 (244)
136 cd00598 GH18_chitinase-like Th 79.4 11 0.00024 32.2 8.0 31 175-205 84-114 (210)
137 PF08821 CGGC: CGGC domain; I 77.3 9.3 0.0002 29.3 6.0 67 24-109 37-104 (107)
138 PRK15452 putative protease; Pr 77.2 24 0.00051 34.5 10.2 54 40-109 11-64 (443)
139 KOG2499 Beta-N-acetylhexosamin 76.5 14 0.00031 35.8 8.2 30 89-118 248-278 (542)
140 PRK10076 pyruvate formate lyas 76.1 7.9 0.00017 33.7 6.1 65 43-109 145-211 (213)
141 KOG0496 Beta-galactosidase [Ca 75.8 5.2 0.00011 40.2 5.3 60 45-113 51-110 (649)
142 cd06546 GH18_CTS3_chitinase GH 75.3 20 0.00043 32.2 8.6 33 175-207 92-124 (256)
143 smart00518 AP2Ec AP endonuclea 75.1 43 0.00093 30.0 10.9 53 44-109 11-63 (273)
144 PTZ00445 p36-lilke protein; Pr 74.4 7.6 0.00016 33.6 5.3 63 43-109 29-96 (219)
145 TIGR01210 conserved hypothetic 73.5 7.4 0.00016 36.1 5.5 33 81-115 147-179 (313)
146 cd07944 DRE_TIM_HOA_like 4-hyd 73.3 52 0.0011 29.7 10.8 69 89-219 107-176 (266)
147 PLN02849 beta-glucosidase 73.0 7 0.00015 38.8 5.5 66 41-116 77-142 (503)
148 PRK05939 hypothetical protein; 72.7 13 0.00027 35.8 7.1 62 51-113 105-170 (397)
149 PRK07094 biotin synthase; Prov 72.1 7.6 0.00017 36.0 5.3 32 88-119 162-193 (323)
150 PRK13209 L-xylulose 5-phosphat 70.9 62 0.0014 29.1 11.0 54 44-109 22-75 (283)
151 PF01373 Glyco_hydro_14: Glyco 70.5 5.5 0.00012 37.9 3.9 67 39-119 12-81 (402)
152 PRK05628 coproporphyrinogen II 70.4 9.4 0.0002 36.3 5.6 34 86-119 139-173 (375)
153 PRK08207 coproporphyrinogen II 70.2 11 0.00024 37.3 6.2 63 47-118 270-333 (488)
154 TIGR00217 malQ 4-alpha-glucano 69.7 7.7 0.00017 38.6 5.0 46 184-231 295-363 (513)
155 PRK08208 coproporphyrinogen II 68.8 9.6 0.00021 37.0 5.4 31 89-119 175-206 (430)
156 cd07937 DRE_TIM_PC_TC_5S Pyruv 68.6 92 0.002 28.2 11.7 39 181-220 149-188 (275)
157 PF01212 Beta_elim_lyase: Beta 68.3 5.3 0.00011 36.6 3.3 23 89-111 143-165 (290)
158 PF07555 NAGidase: beta-N-acet 67.6 44 0.00095 30.9 9.1 101 42-205 14-116 (306)
159 PRK05967 cystathionine beta-ly 66.8 21 0.00046 34.3 7.2 63 51-114 123-189 (395)
160 TIGR00539 hemN_rel putative ox 66.4 13 0.00027 35.2 5.6 34 86-119 131-165 (360)
161 PF00724 Oxidored_FMN: NADH:fl 66.4 83 0.0018 29.5 11.0 71 44-120 37-107 (341)
162 cd02877 GH18_hevamine_XipI_cla 65.9 76 0.0016 28.9 10.3 63 47-110 14-78 (280)
163 PRK06256 biotin synthase; Vali 65.9 10 0.00023 35.4 4.9 58 48-115 154-211 (336)
164 PLN02803 beta-amylase 65.7 21 0.00045 35.3 6.8 66 40-119 101-172 (548)
165 KOG0259 Tyrosine aminotransfer 64.8 6.4 0.00014 37.0 3.0 32 89-120 217-248 (447)
166 PRK05904 coproporphyrinogen II 64.7 14 0.00031 34.8 5.6 63 47-118 104-167 (353)
167 TIGR00433 bioB biotin syntheta 64.2 19 0.00041 32.8 6.2 59 47-115 124-182 (296)
168 COG1242 Predicted Fe-S oxidore 63.7 33 0.00071 31.1 7.1 26 89-114 166-191 (312)
169 cd00019 AP2Ec AP endonuclease 62.5 1.2E+02 0.0025 27.3 12.7 54 43-109 10-64 (279)
170 PRK05660 HemN family oxidoredu 62.4 17 0.00038 34.6 5.7 64 47-119 108-172 (378)
171 PF15640 Tox-MPTase4: Metallop 62.1 8.7 0.00019 30.0 2.8 26 85-110 16-41 (132)
172 cd02929 TMADH_HD_FMN Trimethyl 61.2 1.4E+02 0.0031 28.3 11.7 30 89-120 81-110 (370)
173 cd04735 OYE_like_4_FMN Old yel 61.1 1.5E+02 0.0032 28.0 11.8 30 89-120 76-105 (353)
174 PLN02801 beta-amylase 60.9 27 0.00058 34.3 6.6 65 41-119 35-102 (517)
175 TIGR01211 ELP3 histone acetylt 60.9 15 0.00033 36.6 5.1 63 47-118 207-269 (522)
176 PRK13384 delta-aminolevulinic 60.4 1.4E+02 0.0031 27.5 11.0 84 23-116 31-126 (322)
177 PRK12677 xylose isomerase; Pro 60.3 1.5E+02 0.0032 28.4 11.6 53 44-109 32-85 (384)
178 PRK13347 coproporphyrinogen II 60.0 21 0.00045 35.0 5.9 34 86-119 183-217 (453)
179 TIGR03471 HpnJ hopanoid biosyn 59.5 22 0.00047 35.0 6.0 29 89-117 321-349 (472)
180 COG2873 MET17 O-acetylhomoseri 59.3 28 0.00061 32.8 6.2 95 11-118 90-188 (426)
181 TIGR00542 hxl6Piso_put hexulos 58.6 21 0.00045 32.2 5.4 54 43-108 16-69 (279)
182 PLN02905 beta-amylase 58.5 32 0.00068 34.7 6.7 66 40-119 283-351 (702)
183 PRK08446 coproporphyrinogen II 58.2 26 0.00057 32.9 6.1 33 86-118 129-162 (350)
184 PLN02161 beta-amylase 58.0 35 0.00075 33.6 6.8 66 40-119 114-182 (531)
185 TIGR00538 hemN oxygen-independ 57.5 22 0.00047 34.9 5.6 33 87-119 183-216 (455)
186 COG0520 csdA Selenocysteine ly 57.4 9.9 0.00021 36.6 3.1 103 19-132 108-222 (405)
187 cd02931 ER_like_FMN Enoate red 57.4 1.8E+02 0.0039 27.8 12.9 28 90-119 82-110 (382)
188 cd08560 GDPD_EcGlpQ_like_1 Gly 56.7 18 0.0004 34.1 4.7 20 93-112 280-299 (356)
189 COG3345 GalA Alpha-galactosida 55.5 44 0.00095 33.3 7.0 77 41-120 307-384 (687)
190 PRK08599 coproporphyrinogen II 55.3 25 0.00053 33.5 5.5 34 86-119 131-165 (377)
191 PLN00197 beta-amylase; Provisi 55.3 38 0.00083 33.6 6.6 65 41-119 125-192 (573)
192 PRK09249 coproporphyrinogen II 55.2 29 0.00062 34.0 6.0 34 86-119 182-216 (453)
193 TIGR00510 lipA lipoate synthas 54.7 33 0.00071 31.6 5.9 62 40-110 219-280 (302)
194 PLN02389 biotin synthase 54.2 42 0.0009 32.1 6.7 27 89-115 211-237 (379)
195 cd03412 CbiK_N Anaerobic cobal 54.1 16 0.00036 28.8 3.4 61 41-102 54-125 (127)
196 cd04724 Tryptophan_synthase_al 53.7 29 0.00063 30.8 5.3 25 91-115 116-140 (242)
197 cd04734 OYE_like_3_FMN Old yel 53.3 2E+02 0.0043 27.0 12.3 70 45-120 35-104 (343)
198 COG1874 LacA Beta-galactosidas 53.3 25 0.00055 36.1 5.3 59 43-113 30-90 (673)
199 PRK12928 lipoyl synthase; Prov 53.0 50 0.0011 30.2 6.8 63 40-111 216-278 (290)
200 cd00615 Orn_deC_like Ornithine 52.2 12 0.00026 34.1 2.7 26 87-112 166-191 (294)
201 PRK09028 cystathionine beta-ly 51.7 21 0.00045 34.3 4.3 63 51-114 120-186 (394)
202 cd02803 OYE_like_FMN_family Ol 51.7 60 0.0013 30.0 7.3 62 53-120 43-104 (327)
203 PLN02705 beta-amylase 51.6 43 0.00093 33.7 6.3 65 41-119 266-333 (681)
204 cd00945 Aldolase_Class_I Class 51.5 47 0.001 27.8 6.2 59 42-116 64-125 (201)
205 PRK09997 hydroxypyruvate isome 51.4 49 0.0011 29.4 6.5 64 45-109 17-103 (258)
206 PRK07379 coproporphyrinogen II 51.4 28 0.0006 33.5 5.1 34 86-119 146-180 (400)
207 PF03644 Glyco_hydro_85: Glyco 50.7 27 0.00057 32.4 4.7 21 94-114 45-65 (311)
208 COG0041 PurE Phosphoribosylcar 50.3 22 0.00047 29.0 3.4 52 40-111 13-64 (162)
209 PF01791 DeoC: DeoC/LacD famil 50.1 15 0.00032 32.4 2.8 25 90-114 111-135 (236)
210 PRK13125 trpA tryptophan synth 50.1 49 0.0011 29.3 6.2 26 89-114 114-139 (244)
211 PRK05799 coproporphyrinogen II 49.5 38 0.00082 32.1 5.7 64 47-119 100-164 (374)
212 PRK13397 3-deoxy-7-phosphohept 49.3 2E+02 0.0042 25.8 10.4 64 40-118 133-196 (250)
213 PRK09852 cryptic 6-phospho-bet 49.0 35 0.00076 33.6 5.5 66 40-112 68-133 (474)
214 PRK08114 cystathionine beta-ly 49.0 40 0.00086 32.4 5.7 63 50-113 120-188 (395)
215 cd06548 GH18_chitinase The GH1 48.3 24 0.00053 32.7 4.1 30 175-204 105-134 (322)
216 TIGR03234 OH-pyruv-isom hydrox 48.2 56 0.0012 28.9 6.3 22 44-65 15-36 (254)
217 PRK08195 4-hyroxy-2-oxovalerat 47.8 1.2E+02 0.0026 28.4 8.6 50 181-231 144-198 (337)
218 cd07940 DRE_TIM_IPMS 2-isoprop 47.7 1.2E+02 0.0026 27.3 8.4 37 181-218 143-180 (268)
219 PRK06294 coproporphyrinogen II 47.5 43 0.00094 31.8 5.7 64 47-119 104-168 (370)
220 PF04914 DltD_C: DltD C-termin 47.5 4.1 9E-05 32.4 -1.0 59 42-111 35-95 (130)
221 PF07021 MetW: Methionine bios 47.4 54 0.0012 28.0 5.6 64 49-118 95-173 (193)
222 smart00733 Mterf Mitochondrial 47.3 13 0.00029 20.2 1.5 17 42-58 15-31 (31)
223 cd02876 GH18_SI-CLP Stabilin-1 47.3 24 0.00052 32.7 3.9 29 175-203 88-116 (318)
224 COG2200 Rtn c-di-GMP phosphodi 47.3 28 0.0006 31.2 4.2 68 40-114 133-216 (256)
225 TIGR03217 4OH_2_O_val_ald 4-hy 47.2 1.3E+02 0.0027 28.3 8.6 50 181-231 143-197 (333)
226 TIGR03586 PseI pseudaminic aci 46.9 61 0.0013 30.2 6.4 72 39-111 13-97 (327)
227 cd00384 ALAD_PBGS Porphobilino 46.9 2.4E+02 0.0051 26.1 11.2 85 22-116 20-116 (314)
228 PRK06582 coproporphyrinogen II 46.4 47 0.001 31.8 5.8 64 47-119 112-175 (390)
229 TIGR01324 cysta_beta_ly_B cyst 46.2 29 0.00064 33.0 4.4 63 51-114 109-175 (377)
230 KOG2730 Methylase [General fun 46.1 17 0.00036 31.8 2.3 40 39-79 149-188 (263)
231 cd06543 GH18_PF-ChiA-like PF-C 46.0 82 0.0018 28.9 7.1 51 50-109 19-72 (294)
232 smart00636 Glyco_18 Glycosyl h 45.8 28 0.0006 32.3 4.1 30 175-204 87-116 (334)
233 cd02879 GH18_plant_chitinase_c 45.7 26 0.00056 32.2 3.8 30 175-204 88-117 (299)
234 TIGR01162 purE phosphoribosyla 45.6 45 0.00097 27.4 4.7 52 40-111 9-60 (156)
235 cd04747 OYE_like_5_FMN Old yel 45.6 2.7E+02 0.0059 26.4 12.2 30 89-120 76-105 (361)
236 PRK05692 hydroxymethylglutaryl 45.4 1.8E+02 0.0039 26.5 9.2 37 181-218 155-192 (287)
237 cd04795 SIS SIS domain. SIS (S 45.4 25 0.00053 25.0 3.0 66 43-109 10-79 (87)
238 PRK10605 N-ethylmaleimide redu 45.4 2.1E+02 0.0046 27.1 10.0 30 89-120 77-106 (362)
239 cd03315 MLE_like Muconate lact 45.3 32 0.00069 30.9 4.3 71 39-110 139-237 (265)
240 COG0134 TrpC Indole-3-glycerol 45.3 28 0.00061 31.1 3.7 23 89-111 141-163 (254)
241 cd06549 GH18_trifunctional GH1 45.1 27 0.00059 32.0 3.8 31 174-204 83-113 (298)
242 cd01335 Radical_SAM Radical SA 44.8 34 0.00073 28.2 4.2 32 86-117 120-151 (204)
243 TIGR02006 IscS cysteine desulf 44.8 51 0.0011 31.5 5.9 70 42-113 102-181 (402)
244 PLN02814 beta-glucosidase 44.5 48 0.001 33.0 5.7 66 41-116 75-140 (504)
245 PF00682 HMGL-like: HMGL-like 44.3 1.6E+02 0.0035 25.6 8.6 50 181-231 137-190 (237)
246 cd00287 ribokinase_pfkB_like r 44.1 40 0.00086 28.1 4.5 52 49-114 43-94 (196)
247 cd07939 DRE_TIM_NifV Streptomy 43.9 1.7E+02 0.0037 26.1 8.7 37 181-218 139-176 (259)
248 PRK13523 NADPH dehydrogenase N 43.6 2.7E+02 0.0058 26.1 10.3 70 44-119 38-107 (337)
249 COG1105 FruK Fructose-1-phosph 43.5 28 0.00061 32.1 3.6 23 89-111 144-166 (310)
250 cd03174 DRE_TIM_metallolyase D 43.5 1.5E+02 0.0032 26.3 8.3 37 181-218 146-183 (265)
251 PF02836 Glyco_hydro_2_C: Glyc 43.4 88 0.0019 28.5 7.0 65 24-113 14-81 (298)
252 PF07488 Glyco_hydro_67M: Glyc 43.3 87 0.0019 28.8 6.5 104 41-204 55-159 (328)
253 TIGR02666 moaA molybdenum cofa 43.1 71 0.0015 29.7 6.4 59 47-113 103-162 (334)
254 PRK07050 cystathionine beta-ly 42.5 35 0.00075 32.7 4.3 64 51-115 124-191 (394)
255 PLN02428 lipoic acid synthase 42.5 80 0.0017 29.8 6.5 63 41-112 260-322 (349)
256 PF02679 ComA: (2R)-phospho-3- 42.5 64 0.0014 28.7 5.5 79 90-229 53-134 (244)
257 cd04740 DHOD_1B_like Dihydroor 42.4 1.8E+02 0.0038 26.5 8.8 73 23-114 90-164 (296)
258 cd04824 eu_ALAD_PBGS_cysteine_ 42.4 94 0.002 28.7 6.6 88 22-116 20-119 (320)
259 PRK09331 Sep-tRNA:Cys-tRNA syn 42.4 27 0.00058 33.3 3.5 34 80-114 165-198 (387)
260 cd06454 KBL_like KBL_like; thi 42.3 23 0.0005 32.8 3.0 29 85-113 143-171 (349)
261 cd07938 DRE_TIM_HMGL 3-hydroxy 42.3 1.7E+02 0.0036 26.6 8.4 37 181-218 149-186 (274)
262 PF00704 Glyco_hydro_18: Glyco 42.2 31 0.00068 31.9 3.9 33 176-208 96-128 (343)
263 cd03409 Chelatase_Class_II Cla 42.1 23 0.0005 26.2 2.5 28 43-70 45-72 (101)
264 cd06452 SepCysS Sep-tRNA:Cys-t 42.0 22 0.00049 33.3 2.9 33 81-114 147-179 (361)
265 PF01276 OKR_DC_1: Orn/Lys/Arg 41.9 8.6 0.00019 37.1 0.0 28 84-111 177-204 (417)
266 cd05014 SIS_Kpsf KpsF-like pro 41.8 29 0.00063 26.9 3.1 58 51-109 21-79 (128)
267 TIGR01814 kynureninase kynuren 41.7 22 0.00048 34.0 2.9 33 79-112 177-209 (406)
268 TIGR03551 F420_cofH 7,8-dideme 41.7 33 0.00072 32.2 3.9 28 89-116 177-204 (343)
269 PRK14017 galactonate dehydrata 41.6 95 0.0021 29.6 7.1 68 41-109 189-284 (382)
270 PRK08247 cystathionine gamma-s 41.4 39 0.00084 32.0 4.4 62 51-113 110-175 (366)
271 PLN02509 cystathionine beta-ly 41.2 39 0.00084 33.3 4.4 32 81-113 225-256 (464)
272 PF04914 DltD_C: DltD C-termin 41.2 33 0.00071 27.3 3.2 24 90-113 35-58 (130)
273 TIGR02026 BchE magnesium-proto 41.2 54 0.0012 32.5 5.5 30 88-117 320-349 (497)
274 TIGR03849 arch_ComA phosphosul 41.1 1.3E+02 0.0029 26.6 7.2 48 180-228 70-120 (237)
275 cd02872 GH18_chitolectin_chito 41.0 32 0.0007 32.4 3.8 29 175-203 92-120 (362)
276 COG1891 Uncharacterized protei 41.0 17 0.00036 30.4 1.6 22 89-110 165-186 (235)
277 COG1168 MalY Bifunctional PLP- 40.9 32 0.00068 32.5 3.5 73 39-112 90-199 (388)
278 PRK00278 trpC indole-3-glycero 40.8 35 0.00077 30.6 3.8 23 89-111 145-167 (260)
279 PF09445 Methyltransf_15: RNA 40.7 81 0.0018 26.2 5.6 68 40-114 55-122 (163)
280 PRK15014 6-phospho-beta-glucos 40.6 65 0.0014 31.8 5.9 66 40-112 66-131 (477)
281 PRK05613 O-acetylhomoserine am 40.6 70 0.0015 31.2 6.1 64 50-114 127-195 (437)
282 COG2355 Zn-dependent dipeptida 40.5 66 0.0014 29.8 5.5 68 41-119 106-173 (313)
283 cd00614 CGS_like CGS_like: Cys 40.5 26 0.00056 33.2 3.0 29 85-113 136-164 (369)
284 PRK08573 phosphomethylpyrimidi 40.5 30 0.00064 33.9 3.5 73 42-116 16-109 (448)
285 TIGR02631 xylA_Arthro xylose i 40.4 83 0.0018 30.1 6.4 56 42-109 31-86 (382)
286 cd07945 DRE_TIM_CMS Leptospira 39.7 2.6E+02 0.0057 25.3 9.4 37 181-218 147-184 (280)
287 TIGR01108 oadA oxaloacetate de 39.6 3.5E+02 0.0076 27.5 11.0 37 181-218 149-186 (582)
288 PRK07269 cystathionine gamma-s 39.4 28 0.00062 32.9 3.1 32 81-113 144-175 (364)
289 PLN02651 cysteine desulfurase 39.3 28 0.00061 32.7 3.1 67 45-113 101-177 (364)
290 PRK11145 pflA pyruvate formate 39.3 59 0.0013 28.7 5.0 21 88-108 225-245 (246)
291 cd02933 OYE_like_FMN Old yello 39.3 2.4E+02 0.0053 26.4 9.3 29 90-120 76-104 (338)
292 PRK05968 hypothetical protein; 39.2 43 0.00094 32.0 4.4 83 21-113 101-186 (389)
293 PRK13361 molybdenum cofactor b 39.1 78 0.0017 29.4 6.0 59 47-114 105-164 (329)
294 cd03320 OSBS o-Succinylbenzoat 39.0 74 0.0016 28.5 5.6 69 41-110 139-233 (263)
295 TIGR02539 SepCysS Sep-tRNA:Cys 38.8 30 0.00066 32.6 3.2 33 81-114 154-186 (370)
296 smart00729 Elp3 Elongator prot 38.5 77 0.0017 26.4 5.5 29 88-116 133-162 (216)
297 TIGR03699 mena_SCO4550 menaqui 38.2 44 0.00096 31.2 4.2 33 85-118 175-207 (340)
298 PRK00164 moaA molybdenum cofac 38.2 91 0.002 28.9 6.3 58 47-113 109-167 (331)
299 PRK11194 ribosomal RNA large s 38.2 1.3E+02 0.0027 28.7 7.2 56 41-109 276-331 (372)
300 TIGR01140 L_thr_O3P_dcar L-thr 38.1 34 0.00074 31.7 3.4 28 89-116 143-170 (330)
301 PRK09057 coproporphyrinogen II 38.1 59 0.0013 31.0 5.1 64 47-119 105-168 (380)
302 COG1640 MalQ 4-alpha-glucanotr 38.0 93 0.002 31.0 6.4 21 298-318 393-413 (520)
303 PRK13479 2-aminoethylphosphona 37.9 2.1E+02 0.0045 26.7 8.8 86 19-117 77-173 (368)
304 cd00609 AAT_like Aspartate ami 37.9 35 0.00075 31.3 3.5 27 89-115 150-176 (350)
305 PRK09997 hydroxypyruvate isome 37.8 90 0.0019 27.7 6.0 60 42-111 84-144 (258)
306 PTZ00242 protein tyrosine phos 37.7 56 0.0012 27.1 4.3 59 45-103 29-93 (166)
307 PRK12581 oxaloacetate decarbox 37.6 2E+02 0.0044 28.3 8.6 40 179-219 161-201 (468)
308 PRK09283 delta-aminolevulinic 37.5 3.4E+02 0.0074 25.2 11.0 85 22-116 28-124 (323)
309 cd02878 GH18_zymocin_alpha Zym 37.4 40 0.00087 31.6 3.8 29 176-204 88-116 (345)
310 cd03413 CbiK_C Anaerobic cobal 37.2 25 0.00054 26.6 1.9 29 44-72 43-71 (103)
311 PLN00145 tyrosine/nicotianamin 37.2 38 0.00083 32.8 3.7 29 89-117 208-236 (430)
312 cd01494 AAT_I Aspartate aminot 37.1 30 0.00065 27.7 2.6 30 87-116 105-134 (170)
313 PRK09989 hypothetical protein; 36.8 98 0.0021 27.5 6.1 64 45-109 17-103 (258)
314 COG0826 Collagenase and relate 36.7 38 0.00083 31.9 3.5 57 40-112 14-70 (347)
315 cd03316 MR_like Mandelate race 36.6 54 0.0012 30.8 4.6 70 40-110 200-297 (357)
316 PRK08960 hypothetical protein; 36.4 43 0.00092 31.8 3.9 28 89-116 183-210 (387)
317 PRK14012 cysteine desulfurase; 36.3 45 0.00097 31.9 4.0 71 42-113 104-183 (404)
318 PRK07811 cystathionine gamma-s 36.2 33 0.00072 32.7 3.1 33 81-114 154-186 (388)
319 COG1809 (2R)-phospho-3-sulfola 36.0 91 0.002 27.3 5.2 21 90-110 118-138 (258)
320 COG0436 Aspartate/tyrosine/aro 35.9 40 0.00087 32.3 3.6 31 89-119 181-211 (393)
321 PRK07812 O-acetylhomoserine am 35.8 33 0.00071 33.5 3.0 61 51-112 128-193 (436)
322 TIGR03569 NeuB_NnaB N-acetylne 35.8 98 0.0021 28.9 6.0 71 39-110 12-95 (329)
323 cd05017 SIS_PGI_PMI_1 The memb 35.7 43 0.00093 25.8 3.1 55 51-109 20-75 (119)
324 cd07943 DRE_TIM_HOA 4-hydroxy- 35.5 2.7E+02 0.0058 24.9 8.7 37 181-218 141-178 (263)
325 TIGR01329 cysta_beta_ly_E cyst 35.4 34 0.00074 32.6 3.0 62 51-113 105-170 (378)
326 PRK14463 ribosomal RNA large s 35.4 2.6E+02 0.0056 26.4 8.8 73 22-110 248-320 (349)
327 PF00266 Aminotran_5: Aminotra 35.2 19 0.0004 34.0 1.2 70 42-112 98-177 (371)
328 PLN00175 aminotransferase fami 35.2 46 0.00099 32.0 3.9 29 89-117 205-233 (413)
329 TIGR00587 nfo apurinic endonuc 35.1 2.6E+02 0.0056 25.1 8.6 50 44-106 12-61 (274)
330 PRK13561 putative diguanylate 35.0 57 0.0012 33.4 4.8 68 40-114 531-614 (651)
331 PLN02808 alpha-galactosidase 35.0 69 0.0015 30.6 4.9 52 51-109 62-115 (386)
332 TIGR01325 O_suc_HS_sulf O-succ 35.0 34 0.00074 32.6 2.9 63 51-114 113-179 (380)
333 COG3469 Chitinase [Carbohydrat 34.9 1.6E+02 0.0036 26.3 6.7 33 78-111 73-105 (332)
334 TIGR02127 pyrF_sub2 orotidine 34.9 45 0.00098 30.0 3.5 30 85-114 65-96 (261)
335 cd03322 rpsA The starvation se 34.9 1.2E+02 0.0026 28.6 6.6 68 41-109 175-270 (361)
336 PRK14457 ribosomal RNA large s 34.9 2.9E+02 0.0062 26.1 9.0 71 22-108 253-323 (345)
337 PRK07568 aspartate aminotransf 34.8 43 0.00094 31.8 3.7 29 89-117 180-208 (397)
338 cd06502 TA_like Low-specificit 34.8 39 0.00084 31.1 3.2 24 89-112 144-167 (338)
339 PRK13957 indole-3-glycerol-pho 34.7 49 0.0011 29.5 3.6 23 89-111 136-158 (247)
340 PRK09058 coproporphyrinogen II 34.7 85 0.0018 30.7 5.7 32 88-119 196-228 (449)
341 PRK15029 arginine decarboxylas 34.6 30 0.00066 36.2 2.6 29 84-112 321-349 (755)
342 KOG4701 Chitinase [Cell wall/m 34.4 1.1E+02 0.0024 29.0 5.8 21 91-111 90-110 (568)
343 PF01565 FAD_binding_4: FAD bi 34.4 54 0.0012 25.8 3.6 22 88-109 8-29 (139)
344 PRK00125 pyrF orotidine 5'-pho 34.1 44 0.00095 30.4 3.3 27 90-116 72-98 (278)
345 COG1103 Archaea-specific pyrid 34.0 40 0.00087 30.5 2.9 34 79-113 162-195 (382)
346 PF12905 Glyco_hydro_101: Endo 33.8 24 0.00052 33.7 1.6 89 19-111 24-115 (425)
347 PLN02187 rooty/superroot1 33.8 48 0.0011 32.5 3.8 29 89-117 222-250 (462)
348 cd05013 SIS_RpiR RpiR-like pro 33.7 50 0.0011 25.6 3.3 69 40-109 22-92 (139)
349 TIGR03392 FeS_syn_CsdA cystein 33.6 34 0.00073 32.6 2.7 62 51-113 126-196 (398)
350 TIGR03235 DNA_S_dndA cysteine 33.6 38 0.00082 31.6 3.0 72 44-116 100-182 (353)
351 TIGR00423 radical SAM domain p 33.6 66 0.0014 29.6 4.5 29 88-116 142-170 (309)
352 PRK09064 5-aminolevulinate syn 33.6 70 0.0015 30.5 4.9 30 85-114 189-218 (407)
353 PRK08776 cystathionine gamma-s 33.6 39 0.00084 32.6 3.1 33 81-114 153-185 (405)
354 PRK14453 chloramphenicol/florf 33.6 1.8E+02 0.0038 27.5 7.3 74 23-109 247-324 (347)
355 COG1082 IolE Sugar phosphate i 33.5 70 0.0015 28.4 4.6 23 42-64 14-36 (274)
356 PRK14462 ribosomal RNA large s 33.4 1.5E+02 0.0033 28.1 6.8 56 41-109 277-332 (356)
357 cd00617 Tnase_like Tryptophana 33.4 49 0.0011 32.2 3.7 24 89-112 171-194 (431)
358 COG0626 MetC Cystathionine bet 33.4 71 0.0015 30.7 4.7 70 39-112 113-187 (396)
359 PF01261 AP_endonuc_2: Xylose 33.3 1.2E+02 0.0025 25.5 5.8 55 42-110 70-131 (213)
360 PTZ00413 lipoate synthase; Pro 33.3 1.2E+02 0.0027 28.9 6.1 66 39-113 306-371 (398)
361 PF00218 IGPS: Indole-3-glycer 33.2 53 0.0012 29.4 3.6 23 89-111 143-165 (254)
362 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.1 47 0.001 25.6 3.0 58 50-109 19-78 (126)
363 PRK07671 cystathionine beta-ly 33.1 41 0.00088 32.0 3.1 32 82-114 143-174 (377)
364 PRK00955 hypothetical protein; 33.0 1.5E+02 0.0033 30.3 7.1 43 25-70 479-521 (620)
365 PLN02460 indole-3-glycerol-pho 33.0 55 0.0012 30.6 3.8 23 89-111 215-237 (338)
366 PRK14467 ribosomal RNA large s 32.9 3.2E+02 0.0068 25.8 8.9 73 22-109 250-323 (348)
367 TIGR01976 am_tr_V_VC1184 cyste 32.8 40 0.00086 32.0 3.0 60 52-112 125-194 (397)
368 PRK01278 argD acetylornithine 32.8 56 0.0012 31.0 4.0 28 90-117 195-222 (389)
369 PRK08064 cystathionine beta-ly 32.7 44 0.00094 32.0 3.3 82 22-113 92-177 (390)
370 PRK13511 6-phospho-beta-galact 32.7 76 0.0016 31.3 5.0 67 40-116 51-117 (469)
371 PRK05958 8-amino-7-oxononanoat 32.6 37 0.0008 31.9 2.8 29 85-113 179-207 (385)
372 PRK07777 aminotransferase; Val 32.5 51 0.0011 31.2 3.7 29 89-117 177-205 (387)
373 cd04733 OYE_like_2_FMN Old yel 32.5 1.2E+02 0.0026 28.3 6.1 58 49-112 155-224 (338)
374 cd02873 GH18_IDGF The IDGF's ( 32.4 54 0.0012 31.7 3.8 28 175-202 101-128 (413)
375 TIGR01265 tyr_nico_aTase tyros 32.4 54 0.0012 31.3 3.9 33 85-117 180-215 (403)
376 TIGR00262 trpA tryptophan synt 32.3 1.3E+02 0.0029 26.9 6.1 25 90-114 126-150 (256)
377 PRK07324 transaminase; Validat 32.2 56 0.0012 30.9 3.9 28 89-116 171-198 (373)
378 cd00954 NAL N-Acetylneuraminic 32.0 1.6E+02 0.0035 26.7 6.7 27 40-66 80-106 (288)
379 PRK08898 coproporphyrinogen II 31.9 97 0.0021 29.7 5.5 64 47-119 123-186 (394)
380 PLN02656 tyrosine transaminase 31.8 48 0.0011 31.8 3.4 28 90-117 188-215 (409)
381 cd04733 OYE_like_2_FMN Old yel 31.8 4.3E+02 0.0092 24.6 12.7 29 89-119 80-108 (338)
382 TIGR01437 selA_rel uncharacter 31.8 36 0.00078 32.2 2.5 29 86-114 161-189 (363)
383 cd01299 Met_dep_hydrolase_A Me 31.7 2.1E+02 0.0045 26.4 7.6 62 41-110 118-179 (342)
384 PRK13238 tnaA tryptophanase/L- 31.7 65 0.0014 31.6 4.3 23 89-111 196-218 (460)
385 cd06450 DOPA_deC_like DOPA dec 31.6 39 0.00084 31.3 2.7 34 81-115 156-189 (345)
386 COG1448 TyrB Aspartate/tyrosin 31.6 2E+02 0.0043 27.4 7.1 85 15-119 125-220 (396)
387 PLN02368 alanine transaminase 31.6 57 0.0012 31.5 3.8 29 89-117 228-256 (407)
388 PRK13111 trpA tryptophan synth 31.6 1.2E+02 0.0027 27.2 5.7 26 90-115 128-153 (258)
389 TIGR01822 2am3keto_CoA 2-amino 31.4 43 0.00093 31.7 3.0 29 85-113 181-209 (393)
390 PRK14455 ribosomal RNA large s 31.4 3E+02 0.0066 26.0 8.6 72 22-109 260-331 (356)
391 PF13378 MR_MLE_C: Enolase C-t 31.3 21 0.00046 27.1 0.7 34 77-110 19-52 (111)
392 PRK06348 aspartate aminotransf 31.3 56 0.0012 31.0 3.7 29 89-117 180-208 (384)
393 PRK06939 2-amino-3-ketobutyrat 31.2 43 0.00093 31.6 3.0 30 85-114 185-214 (397)
394 cd05710 SIS_1 A subgroup of th 31.2 56 0.0012 25.2 3.1 25 85-109 55-79 (120)
395 COG1441 MenC O-succinylbenzoat 31.1 53 0.0012 28.8 3.1 27 84-110 237-263 (321)
396 COG3661 AguA Alpha-glucuronida 31.1 1.1E+02 0.0024 29.6 5.4 62 41-112 181-242 (684)
397 PRK06108 aspartate aminotransf 31.0 49 0.0011 31.2 3.3 29 89-117 176-204 (382)
398 PRK08133 O-succinylhomoserine 31.0 45 0.00098 31.9 3.0 62 51-113 120-185 (390)
399 PRK06225 aspartate aminotransf 31.0 48 0.001 31.3 3.2 26 89-114 175-200 (380)
400 TIGR01233 lacG 6-phospho-beta- 30.8 84 0.0018 31.0 4.9 67 40-116 50-116 (467)
401 cd03416 CbiX_SirB_N Sirohydroc 30.6 38 0.00083 25.1 2.0 31 42-72 43-73 (101)
402 TIGR03539 DapC_actino succinyl 30.6 53 0.0012 30.7 3.4 29 89-117 160-188 (357)
403 cd06453 SufS_like Cysteine des 30.5 43 0.00092 31.4 2.8 32 81-113 147-178 (373)
404 TIGR01328 met_gam_lyase methio 30.4 49 0.0011 31.7 3.2 32 82-114 153-184 (391)
405 PRK05764 aspartate aminotransf 30.4 57 0.0012 30.9 3.7 27 90-116 183-209 (393)
406 PTZ00125 ornithine aminotransf 30.4 1.6E+02 0.0035 27.9 6.8 61 41-118 166-226 (400)
407 PRK08134 O-acetylhomoserine am 30.4 47 0.001 32.3 3.1 80 22-113 103-188 (433)
408 cd07948 DRE_TIM_HCS Saccharomy 30.4 4E+02 0.0087 23.9 8.9 37 181-218 141-178 (262)
409 PRK07810 O-succinylhomoserine 30.4 47 0.001 31.9 3.1 63 51-114 129-195 (403)
410 cd00958 DhnA Class I fructose- 30.3 61 0.0013 28.4 3.6 23 91-113 109-131 (235)
411 TIGR02326 transamin_PhnW 2-ami 30.3 44 0.00096 31.3 2.9 32 80-112 136-167 (363)
412 PRK02227 hypothetical protein; 30.3 54 0.0012 29.0 3.1 51 47-109 135-185 (238)
413 PTZ00376 aspartate aminotransf 30.3 55 0.0012 31.3 3.5 30 89-118 194-223 (404)
414 PF00232 Glyco_hydro_1: Glycos 30.2 35 0.00075 33.5 2.2 68 40-116 55-122 (455)
415 PLN02591 tryptophan synthase 30.2 1.7E+02 0.0038 26.1 6.4 50 44-116 94-143 (250)
416 TIGR00858 bioF 8-amino-7-oxono 30.2 38 0.00083 31.4 2.4 28 86-113 158-185 (360)
417 TIGR02109 PQQ_syn_pqqE coenzym 30.2 86 0.0019 29.4 4.8 29 88-116 129-157 (358)
418 PRK07683 aminotransferase A; V 30.1 57 0.0012 31.0 3.6 28 89-116 179-206 (387)
419 cd02803 OYE_like_FMN_family Ol 30.1 1.6E+02 0.0034 27.2 6.5 60 49-114 147-218 (327)
420 KOG2584 Dihydroorotase and rel 30.1 30 0.00066 33.2 1.6 86 89-205 84-169 (522)
421 PRK08056 threonine-phosphate d 30.1 57 0.0012 30.5 3.5 28 89-116 160-187 (356)
422 TIGR03301 PhnW-AepZ 2-aminoeth 30.1 66 0.0014 29.7 4.0 32 81-113 133-164 (355)
423 PRK07582 cystathionine gamma-l 30.0 52 0.0011 31.1 3.3 62 51-113 109-171 (366)
424 PHA00450 host dGTPase inhibito 30.0 85 0.0018 22.5 3.4 29 88-116 7-35 (85)
425 PLN02746 hydroxymethylglutaryl 29.9 3.9E+02 0.0085 25.2 8.9 37 181-218 197-234 (347)
426 cd00308 enolase_like Enolase-s 29.9 68 0.0015 27.9 3.8 68 41-109 106-201 (229)
427 PF00834 Ribul_P_3_epim: Ribul 29.8 1.1E+02 0.0024 26.3 4.9 70 43-114 92-176 (201)
428 PF00490 ALAD: Delta-aminolevu 29.7 81 0.0018 29.2 4.2 86 21-116 25-124 (324)
429 PRK08175 aminotransferase; Val 29.6 58 0.0013 31.0 3.6 28 89-116 182-209 (395)
430 PRK13520 L-tyrosine decarboxyl 29.6 41 0.00089 31.5 2.5 29 85-113 162-190 (371)
431 KOG0053 Cystathionine beta-lya 29.5 49 0.0011 31.7 2.9 31 81-112 170-200 (409)
432 PRK09295 bifunctional cysteine 29.5 44 0.00096 31.9 2.7 34 79-113 170-203 (406)
433 PRK05957 aspartate aminotransf 29.5 61 0.0013 30.8 3.7 33 85-117 171-206 (389)
434 PRK09082 methionine aminotrans 29.5 51 0.0011 31.2 3.2 33 85-117 174-209 (386)
435 PRK05839 hypothetical protein; 29.4 55 0.0012 30.9 3.3 29 89-117 173-201 (374)
436 COG1902 NemA NADH:flavin oxido 29.3 5E+02 0.011 24.6 12.2 28 90-119 82-109 (363)
437 TIGR01928 menC_lowGC/arch o-su 29.3 58 0.0013 30.3 3.4 66 42-109 186-279 (324)
438 PRK07503 methionine gamma-lyas 29.1 50 0.0011 31.8 3.0 63 51-114 124-190 (403)
439 cd03329 MR_like_4 Mandelate ra 29.1 2E+02 0.0044 27.1 7.1 68 41-109 201-297 (368)
440 PRK10874 cysteine sulfinate de 29.0 46 0.001 31.7 2.7 62 51-113 129-199 (401)
441 PRK05301 pyrroloquinoline quin 29.0 83 0.0018 29.8 4.5 29 88-116 138-166 (378)
442 TIGR00676 fadh2 5,10-methylene 29.0 1.8E+02 0.004 26.2 6.5 65 42-109 14-91 (272)
443 TIGR00474 selA seryl-tRNA(sec) 28.9 40 0.00088 33.0 2.3 23 89-111 230-252 (454)
444 TIGR01496 DHPS dihydropteroate 28.9 3.6E+02 0.0078 24.1 8.3 66 33-111 11-82 (257)
445 PRK06207 aspartate aminotransf 28.9 67 0.0015 30.8 3.9 29 89-117 196-224 (405)
446 PF11871 DUF3391: Domain of un 28.6 43 0.00093 26.1 2.1 42 12-64 15-56 (128)
447 TIGR03565 alk_sulf_monoox alka 28.6 55 0.0012 30.7 3.1 26 39-64 303-328 (346)
448 PF12683 DUF3798: Protein of u 28.6 1.5E+02 0.0032 26.8 5.6 52 176-230 180-231 (275)
449 PRK05937 8-amino-7-oxononanoat 28.5 52 0.0011 31.1 3.0 33 81-114 151-183 (370)
450 PRK13237 tyrosine phenol-lyase 28.5 65 0.0014 31.6 3.6 22 90-111 197-218 (460)
451 PRK08248 O-acetylhomoserine am 28.5 55 0.0012 31.8 3.2 62 51-113 123-188 (431)
452 PLN02855 Bifunctional selenocy 28.4 48 0.001 31.9 2.8 34 79-113 179-212 (424)
453 TIGR03127 RuMP_HxlB 6-phospho 28.4 64 0.0014 26.8 3.2 55 50-109 50-104 (179)
454 PRK06176 cystathionine gamma-s 28.4 53 0.0012 31.3 3.0 84 21-114 87-174 (380)
455 cd01301 rDP_like renal dipepti 28.4 1.3E+02 0.0027 27.9 5.4 69 40-119 110-178 (309)
456 cd00616 AHBA_syn 3-amino-5-hyd 28.3 43 0.00094 31.0 2.4 30 85-114 114-143 (352)
457 TIGR03550 F420_cofG 7,8-dideme 28.3 95 0.0021 28.8 4.6 28 90-118 148-175 (322)
458 cd03414 CbiX_SirB_C Sirohydroc 28.2 83 0.0018 24.0 3.6 29 44-72 46-74 (117)
459 cd02930 DCR_FMN 2,4-dienoyl-Co 28.2 3.9E+02 0.0084 25.1 8.8 69 45-119 35-103 (353)
460 cd00953 KDG_aldolase KDG (2-ke 28.2 2E+02 0.0044 25.9 6.7 53 40-110 75-127 (279)
461 TIGR03540 DapC_direct LL-diami 28.1 61 0.0013 30.6 3.4 29 89-117 182-210 (383)
462 TIGR03402 FeS_nifS cysteine de 28.1 49 0.0011 31.2 2.7 70 42-113 96-175 (379)
463 PRK05926 hypothetical protein; 28.0 68 0.0015 30.5 3.6 33 85-117 201-233 (370)
464 PLN00143 tyrosine/nicotianamin 27.9 69 0.0015 30.7 3.7 29 89-117 188-216 (409)
465 TIGR01979 sufS cysteine desulf 27.9 50 0.0011 31.4 2.8 34 79-113 165-198 (403)
466 PRK13398 3-deoxy-7-phosphohept 27.9 2.3E+02 0.005 25.5 6.9 59 41-111 39-98 (266)
467 PF01380 SIS: SIS domain SIS d 27.5 72 0.0016 24.5 3.2 68 39-107 13-83 (131)
468 cd04886 ACT_ThrD-II-like C-ter 27.5 1.4E+02 0.0031 19.7 4.4 58 47-108 14-72 (73)
469 cd00378 SHMT Serine-glycine hy 27.4 50 0.0011 31.4 2.7 28 85-112 170-197 (402)
470 PRK10060 RNase II stability mo 27.4 64 0.0014 33.3 3.6 68 40-114 538-621 (663)
471 PF01408 GFO_IDH_MocA: Oxidore 27.3 71 0.0015 24.2 3.1 55 52-110 58-119 (120)
472 PRK09593 arb 6-phospho-beta-gl 27.2 1.6E+02 0.0035 29.1 6.2 68 40-116 70-137 (478)
473 TIGR01825 gly_Cac_T_rel pyrido 27.2 56 0.0012 30.8 3.0 30 86-115 175-204 (385)
474 PLN02721 threonine aldolase 27.2 71 0.0015 29.6 3.6 24 90-113 157-180 (353)
475 KOG4730 D-arabinono-1, 4-lacto 27.2 58 0.0013 31.6 2.9 27 89-116 58-84 (518)
476 TIGR01264 tyr_amTase_E tyrosin 27.1 65 0.0014 30.7 3.4 29 89-117 186-214 (401)
477 TIGR03854 F420_MSMEG_3544 prob 27.0 61 0.0013 29.6 3.1 26 39-64 243-268 (290)
478 PRK09856 fructoselysine 3-epim 26.9 92 0.002 27.8 4.2 59 42-110 89-148 (275)
479 PRK08249 cystathionine gamma-s 26.8 59 0.0013 31.2 3.1 33 81-114 157-189 (398)
480 TIGR01977 am_tr_V_EF2568 cyste 26.8 54 0.0012 30.7 2.8 34 80-114 144-177 (376)
481 PRK08861 cystathionine gamma-s 26.8 61 0.0013 31.0 3.1 33 81-114 146-178 (388)
482 TIGR01037 pyrD_sub1_fam dihydr 26.8 3.9E+02 0.0084 24.3 8.4 72 24-113 92-166 (300)
483 PRK09276 LL-diaminopimelate am 26.8 70 0.0015 30.2 3.6 29 89-117 184-212 (385)
484 TIGR03700 mena_SCO4494 putativ 26.7 1E+02 0.0022 29.0 4.6 34 81-115 179-212 (351)
485 COG0113 HemB Delta-aminolevuli 26.7 2.2E+02 0.0048 26.2 6.3 83 22-114 30-126 (330)
486 PRK15108 biotin synthase; Prov 26.7 2.2E+02 0.0048 26.7 6.8 28 88-115 168-195 (345)
487 TIGR03812 tyr_de_CO2_Arch tyro 26.7 45 0.00098 31.2 2.2 29 85-113 164-192 (373)
488 PRK11658 UDP-4-amino-4-deoxy-L 26.6 49 0.0011 31.4 2.4 30 86-115 130-159 (379)
489 TIGR00288 conserved hypothetic 26.6 69 0.0015 26.5 2.9 22 89-110 114-135 (160)
490 TIGR03841 F420_Rv3093c probabl 26.5 55 0.0012 30.0 2.7 27 39-65 274-300 (301)
491 cd06451 AGAT_like Alanine-glyo 26.5 63 0.0014 30.0 3.2 28 85-112 135-162 (356)
492 COG3222 Uncharacterized protei 26.5 44 0.00095 28.2 1.8 39 71-109 141-184 (211)
493 COG3280 TreY Maltooligosyl tre 26.4 58 0.0012 33.7 2.9 72 157-228 258-332 (889)
494 TIGR03403 nifS_epsilon cystein 26.4 59 0.0013 30.7 2.9 66 45-112 103-178 (382)
495 PRK11572 copper homeostasis pr 26.4 2.9E+02 0.0064 24.6 7.0 57 172-230 65-125 (248)
496 cd07941 DRE_TIM_LeuA3 Desulfob 26.3 4.4E+02 0.0094 23.7 8.5 37 181-218 151-188 (273)
497 PRK06767 methionine gamma-lyas 26.2 61 0.0013 30.9 3.0 33 81-114 154-186 (386)
498 TIGR01927 menC_gamma/gm+ o-suc 26.2 66 0.0014 29.7 3.1 70 40-110 165-263 (307)
499 PRK14340 (dimethylallyl)adenos 26.2 1.4E+02 0.0031 29.1 5.6 31 89-119 281-313 (445)
500 PRK11059 regulatory protein Cs 26.2 85 0.0018 32.2 4.3 91 19-115 513-614 (640)
No 1
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=9e-72 Score=528.91 Aligned_cols=343 Identities=63% Similarity=1.191 Sum_probs=294.3
Q ss_pred hhhhhhhhhh--cCCCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCC
Q 018278 7 FCFLSFLLAI--FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84 (358)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~ 84 (358)
.||++|++++ .|....++||+|.|+|++..+.||++++|+++|+||++||||+|||+|++++.++|||++.|||++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~ 85 (428)
T PLN00196 6 LSMILLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDA 85 (428)
T ss_pred hHHHHHHHHhccCcccCCCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCc
Confidence 5555555544 45555789999999999977778999999999999999999999999999999999999999999982
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCC
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (358)
++|||.+||++||++||++||+||+|+|+||++.++....+.|..|.++.++++.+|.....+.+...|.++.+++..+.
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 165 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGA 165 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCC
Confidence 39999999999999999999999999999999988875555677787777777788877666665556666666777888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCC
Q 018278 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244 (358)
Q Consensus 165 ~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~ 244 (358)
++..+||||++||+||++|+++++||++++||||||+|+|+|++.+|+++++++.+|.|+|||.|.+.+|++.+..++++
T Consensus 166 ~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~ 245 (428)
T PLN00196 166 DFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQ 245 (428)
T ss_pred CCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccc
Confidence 89999999999999999999999999888999999999999999999999999889999999999987666666777776
Q ss_pred CCchhhHHHHHHhcCCc---eeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC
Q 018278 245 DGHRGALKDWVQAAGGA---VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~~~---~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~ 321 (358)
+.+++.+.+|+...++. ..+|||++...+..++.++.+++.+......+.....|..+|+|++|||++|+++.....
T Consensus 246 ~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~ 325 (428)
T PLN00196 246 NAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFP 325 (428)
T ss_pred hhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCc
Confidence 66778888999876543 458999998877777777777776665555566777899999999999999999987767
Q ss_pred cchHHHHHHHHHcCCCeeeeecCccccC
Q 018278 322 SDKVMLGYAYILTHPGTPCIVISVTYPL 349 (358)
Q Consensus 322 ~~~~~~a~a~l~~~pG~P~IyyGdE~G~ 349 (358)
.++.++|+|++||+||+||||||+-++.
T Consensus 326 ~~~~~lAyA~iLT~pG~P~IyYg~~~~~ 353 (428)
T PLN00196 326 SDKVMQGYAYILTHPGNPCIFYDHFFDW 353 (428)
T ss_pred cchHHHHHHHHHcCCCcceEeeCCCcCc
Confidence 7788999999999999999999998764
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=2.6e-67 Score=492.56 Aligned_cols=317 Identities=49% Similarity=0.970 Sum_probs=266.4
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
..+||+|.|+|++.. ...|++|+++|+||++||||+|||+|++++.++|||++.|||+++ ++|||.+||++||++||
T Consensus 10 ~~~v~lQ~F~W~~~~--~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 10 GREILLQAFNWESHK--HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMK 86 (401)
T ss_pred CCcEEEEEEeccCCc--cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHH
Confidence 578999999999974 358999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 018278 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (358)
Q Consensus 102 ~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~ 181 (358)
++||+||+|+|+||++...+...+.|..|.+ .+.+|.....+... .+.++...+..+..+||||++||+||+
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g----~~~~wd~~~~~~~~----~g~~~~~~~~~~~~lpDLd~~np~Vr~ 158 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDG----IPLPWDEHAVTSCT----GGLGNRSTGDNFNGVPNIDHTQHFVRK 158 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCC----CcCCCCcccccccc----CCCCCccCCCCCccCCccCCCCHHHHH
Confidence 9999999999999997654433333433332 12245433322211 122344556678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCC-CCCCCCCCCCchhhHHHHHHhcCC
Q 018278 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP-DGKPDANQDGHRGALKDWVQAAGG 260 (358)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 260 (358)
+++++++||++++||||||+|+|+|++.+||++++++.+|.|+|||.|.+..+.. ++..+|+++.+++.+..|+...++
T Consensus 159 ~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~ 238 (401)
T PLN02361 159 DIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGG 238 (401)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCC
Confidence 9999999888779999999999999999999999999889999999998744322 233567766677889999998878
Q ss_pred ceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeee
Q 018278 261 AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPC 340 (358)
Q Consensus 261 ~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~ 340 (358)
..++|||++...++.++.++.+++.+.....++..+..|.++|+||+|||++|.++.+..+.++.++|+|++||+||+||
T Consensus 239 ~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~ 318 (401)
T PLN02361 239 LSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPT 318 (401)
T ss_pred cceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCe
Confidence 88999999999999999777888888776666777888999999999999999999887777889999999999999999
Q ss_pred eecCccccC
Q 018278 341 IVISVTYPL 349 (358)
Q Consensus 341 IyyGdE~G~ 349 (358)
||||+-++.
T Consensus 319 Vyyg~~~~~ 327 (401)
T PLN02361 319 VFYDHFYDW 327 (401)
T ss_pred EeeccccCC
Confidence 999997653
No 3
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.4e-65 Score=501.11 Aligned_cols=319 Identities=50% Similarity=1.001 Sum_probs=278.7
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
...+||+|.|+|+++.+ +..|++|+++|+||++||||+|||+|++++.+++||++.|||+++ ++|||.+||++||++|
T Consensus 500 ~~~eVmlQgF~Wds~~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~ 577 (894)
T PLN02784 500 SGFEILCQGFNWESHKS-GRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSF 577 (894)
T ss_pred CCceEEEEeEEcCcCCC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHH
Confidence 34589999999999988 456899999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 018278 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (358)
Q Consensus 101 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~ 180 (358)
|++||+||+|+|+||++..+....+.|..|.+ ..+|.....+.+...|. +.++..++..+..+||||++||+||
T Consensus 578 H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-----~~dW~d~~i~~ddp~F~-GrG~~~sgddf~~lPDLDh~npeVR 651 (894)
T PLN02784 578 HEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVR 651 (894)
T ss_pred HHCCCEEEEEECcccccccccCCCCcccccCC-----eecCCCCcccCCCcccC-CcCCcCcccccCcCCcCCCCCHHHH
Confidence 99999999999999998765433444444433 24565554444443443 4456667778899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCC
Q 018278 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG 260 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (358)
++|+++++||++++||||||+|+|+++..+|+++++++.+|.|+|||.|++..|. .+.++|+++.+++.+.+|+...++
T Consensus 652 ~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~-~g~~~Ynqd~~rq~l~dwi~~tgg 730 (894)
T PLN02784 652 KDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYT-YGEMDYNQDAHRQRIVDWINATNG 730 (894)
T ss_pred HHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccc-cCccccCchhHHHHHHHHHHhCCC
Confidence 9999999999988999999999999999999999999999999999999885543 467889999899999999998888
Q ss_pred ceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCee
Q 018278 261 AVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (358)
Q Consensus 261 ~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P 339 (358)
..++|||+++..+..++. ++.+++.+.....+++.+.+|.++|+||+|||+++.++.+.....+..+|||++||+||+|
T Consensus 731 ~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~P 810 (894)
T PLN02784 731 TAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTP 810 (894)
T ss_pred ceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcc
Confidence 899999999999999995 5788888877777888999999999999999999988766667778889999999999999
Q ss_pred eeecCcccc
Q 018278 340 CIVISVTYP 348 (358)
Q Consensus 340 ~IyyGdE~G 348 (358)
||||||.||
T Consensus 811 cVFy~h~y~ 819 (894)
T PLN02784 811 AVFYDHIFS 819 (894)
T ss_pred eEEehhhhh
Confidence 999999886
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.8e-61 Score=470.87 Aligned_cols=310 Identities=30% Similarity=0.511 Sum_probs=228.1
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccC---------CCCCCCCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYGS 89 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~Gt 89 (358)
+++||+|+|+|+++.+ +.+|++|+++||||++||||+|||+||+++.+ +|||++.||| .|| |+|||
T Consensus 2 ~~~~~~q~f~w~~~~~-~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id-~~fGt 79 (479)
T PRK09441 2 RNGTMMQYFEWYLPND-GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR-TKYGT 79 (479)
T ss_pred CCceEEEEEEeccCCC-ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC-cCcCC
Confidence 5789999999999854 56788999999999999999999999999874 6999999999 799 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCC--CC-------------------cceeeccC-CCCCCC----CCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GR-------------------GIYCIFEG-GTSDDR----LDWGP 143 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~--~~-------------------~~~~~~~~-~~~~~~----~~~~~ 143 (358)
++||++||++||++||+||+|+|+||++..+.. .. ..|..|.. +...++ ..|..
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYH 159 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcC
Confidence 999999999999999999999999999964320 00 00111110 000000 01110
Q ss_pred CcccCCC-----------------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCC
Q 018278 144 SFICRGD-----------------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (358)
Q Consensus 144 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (358)
.+... ..|..........+.+..+||||++||+|+++|++++++|++++||||||+|+|+|
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~ 237 (479)
T PRK09441 160 --FSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH 237 (479)
T ss_pred --CCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC
Confidence 00000 00100000011122445699999999999999999999999989999999999999
Q ss_pred CCHHHHHHHHHh---c-CC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-c
Q 018278 207 YAPSITKVYMEN---T-SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E 280 (358)
Q Consensus 207 i~~~~~~~~~~~---~-~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~ 280 (358)
++.+||+++.++ . +| ++++||+|.+. .+.+..|+...+...++|||++...+..++.+ .
T Consensus 238 v~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~---------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~ 302 (479)
T PRK09441 238 IDAWFIKEWIEHVREVAGKDLFIVGEYWSHD---------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGR 302 (479)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeecCCC---------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCC
Confidence 999999999665 2 23 89999999641 35667788765456678999999888888753 2
Q ss_pred hhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc-hHHHHHHHHHcCC-CeeeeecCccccCCCC
Q 018278 281 LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~-~~~~a~a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
...+.+.... ......+..+++|++|||++|+.+....... +.++|+++|||+| |+|+||||||+|+.+.
T Consensus 303 ~~~l~~~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~ 374 (479)
T PRK09441 303 DYDMRNIFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGY 374 (479)
T ss_pred ccchHhhhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCC
Confidence 2233332211 1112346677999999999999887543222 3589999999999 9999999999998764
No 5
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.5e-61 Score=480.64 Aligned_cols=302 Identities=21% Similarity=0.305 Sum_probs=215.3
Q ss_pred hhcCCCCCCceEEEeeecCCC----C-----C------------------------------CCCchHHHHhhhhhHHHc
Q 018278 15 AIFLPFTSPALLFQGFNWESS----N-----K------------------------------AGGWYNSLKNSIPDLSNA 55 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~~----~-----~------------------------------~~G~~~gl~~~L~yl~~L 55 (358)
...|.|.+++||||+|. |.+ + + .||||+||+++|||||+|
T Consensus 113 ~~~P~W~~~~v~YqIfp-DRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFP-DRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEech-hhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHc
Confidence 56799999999999994 221 0 0 179999999999999999
Q ss_pred CCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCC--
Q 018278 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG-- 133 (358)
Q Consensus 56 Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~-- 133 (358)
|||+|||+||++++++|||++.||++|| |+|||++||++||++||++|||||||+|+||+|.+|++... ...+
T Consensus 192 Gv~~I~L~Pif~s~s~hgYd~~Dy~~iD-p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~----~~~~~~ 266 (598)
T PRK10785 192 GVTALYLNPIFTAPSVHKYDTEDYRHVD-PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDR----HNRGTG 266 (598)
T ss_pred CCCEEEeCCcccCCCCCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHH----hhcccc
Confidence 9999999999999999999999999999 99999999999999999999999999999999998862110 0000
Q ss_pred -----CCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-cCCCeEeecc
Q 018278 134 -----TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD----WMNWLKTE-IGFDGWRFDF 203 (358)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~----~~~~w~~~-~gvDGfR~D~ 203 (358)
..+++.+|.. +. ..+.+..+.....+||||++||+|+++|++ ++++|+++ +||||||+|+
T Consensus 267 ga~~~~~spy~dwf~---------~~-~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDv 336 (598)
T PRK10785 267 GACHHPDSPWRDWYS---------FS-DDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDV 336 (598)
T ss_pred ccccCCCCCcceeeE---------EC-CCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEec
Confidence 0112223321 11 112333445567899999999999999995 89999996 8999999999
Q ss_pred CCCCC--------HHHHHHH---HHhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeecc-chH
Q 018278 204 VKGYA--------PSITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF-TTK 270 (358)
Q Consensus 204 a~~i~--------~~~~~~~---~~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df-~~~ 270 (358)
|++++ .+||+++ +++.+| ++++||+|.... +|+.+ +..+.++++ .+.
T Consensus 337 a~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~-------------------~~l~~-~~~d~~mny~~f~ 396 (598)
T PRK10785 337 VHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDAR-------------------QWLQA-DVEDAAMNYRGFA 396 (598)
T ss_pred HhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChh-------------------hhccC-ccccccccchhhh
Confidence 99884 5899988 455677 889999996521 11111 111222222 111
Q ss_pred HHHHHHHcC----------chhhhhhcCCCC-CCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCee
Q 018278 271 GILQAAVQG----------ELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (358)
Q Consensus 271 ~~l~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P 339 (358)
..+...+.+ +...+...+... ...........++|++|||++|+.+.++.+.++.++|++++||+||+|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP 476 (598)
T PRK10785 397 FPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVP 476 (598)
T ss_pred hHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCc
Confidence 111111110 001110000000 000000011246899999999999988767778999999999999999
Q ss_pred eeecCccccCCCC
Q 018278 340 CIVISVTYPLFHP 352 (358)
Q Consensus 340 ~IyyGdE~G~~~~ 352 (358)
+||||||+|+.+.
T Consensus 477 ~IYYGdE~G~~g~ 489 (598)
T PRK10785 477 CIYYGDEVGLDGG 489 (598)
T ss_pred EEEeeeeccccCC
Confidence 9999999999764
No 6
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.5e-59 Score=461.20 Aligned_cols=312 Identities=18% Similarity=0.264 Sum_probs=227.5
Q ss_pred CCCCCceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHH
Q 018278 19 PFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLK 94 (358)
Q Consensus 19 ~~~~~~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~ 94 (358)
.|.+++||||+|. .|+.++++|||+||+++||||++||||+|||+||+++++ +|||++.||++|| |+|||++||+
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd-~~~Gt~~df~ 79 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL-PEFGTIDDFK 79 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC-hhhCCHHHHH
Confidence 4899999999984 245556789999999999999999999999999999986 7999999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCCCCCCCCCCCccc--CCCCccCCCCCCCCC
Q 018278 95 SLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFIC--RGDKEYSDGQGNDDT 162 (358)
Q Consensus 95 ~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (358)
+||++||++||+||+|+|+||+|.+|+. +..+|+.+.+.... ..+....+.. ...+.+....+.++.
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~y~ 158 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEK-YKDTRIIFVDTEKSNWTFDPVAKQYYW 158 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcc-cccccccccccCCCCccccCCcCeeEE
Confidence 9999999999999999999999998852 22355555432111 0000000000 001112222233444
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC-------------CHHHHHHHH---HhcCC-CeEE
Q 018278 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------APSITKVYM---ENTSP-DFAV 225 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i-------------~~~~~~~~~---~~~~p-~~~~ 225 (358)
..+...+||||++||+||++|++++++|++ +||||||||+++++ ..+||+++. ++.+| ++++
T Consensus 159 ~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~i 237 (539)
T TIGR02456 159 HRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLL 237 (539)
T ss_pred ecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 556789999999999999999999999998 99999999999987 257998884 44566 8899
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-C-CceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCce
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-G-GAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNA 302 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (358)
||++.. .+.+.+|++.. + +.+.+|+|++...+...+ .++...+...+....... .+...
T Consensus 238 aE~~~~----------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~--~~~~~ 299 (539)
T TIGR02456 238 AEANQW----------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIP--DSCQW 299 (539)
T ss_pred EEeCCC----------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhcc--CCCce
Confidence 998532 34556776431 2 578899999876554433 233222322211111111 22345
Q ss_pred eecccCCCCC-------------------------------cCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 303 VTFIDNHDTG-------------------------------STQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 303 v~f~~nHD~~-------------------------------r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
++|++|||+. |+.++.+....+.++|++++||+||+|+||||||+||.+
T Consensus 300 ~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~ 379 (539)
T TIGR02456 300 CIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGD 379 (539)
T ss_pred eeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcC
Confidence 6799999984 344444434557899999999999999999999999974
No 7
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=9.7e-59 Score=456.15 Aligned_cols=312 Identities=20% Similarity=0.296 Sum_probs=229.4
Q ss_pred CCCCceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHHH
Q 018278 20 FTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 20 ~~~~~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
|+++.||||+|. -++++++.|||+||+++|+||++|||++|||+||+++++ .+||++.||++|| |+|||.+||++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~ 79 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN-PLFGTMADFEE 79 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC-cccCCHHHHHH
Confidence 889999999984 155667789999999999999999999999999999986 4799999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (358)
||++||++||+||+|+|+||+|.+|++ +..+|+.|.+.....+.+|...+. ...+.+....++++...+.
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~y~~~f~ 158 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFG-GSAWEYFGDTGQYYLHLFD 158 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCC-CcCccccCCCCceEEeccC
Confidence 999999999999999999999998852 234566666533223344533221 1122333345566677788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-----------------------HHHHHHHHHhc--CC
Q 018278 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------------------PSITKVYMENT--SP 221 (358)
Q Consensus 167 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------------------~~~~~~~~~~~--~p 221 (358)
..+||||++||+|+++|++++++|++ .||||||||+|+++. .+||+++.+.. +|
T Consensus 159 ~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (543)
T TIGR02403 159 KTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDN 237 (543)
T ss_pred CcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccC
Confidence 89999999999999999999999998 899999999999985 35888874432 44
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCceeeeccchHHHHHHHHcC--------chhhhhhcCCCC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQG--------ELWRLKDSNGKP 291 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~l~~~~~~--------~~~~~~~~~~~~ 291 (358)
+|+|||+|... .+.+.+|... ...++.+|+|... ......+ +...+.......
T Consensus 238 ~~~lvgE~~~~~---------------~~~~~~y~~~~~~~~d~~~nf~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (543)
T TIGR02403 238 DSVTVGEMSSTT---------------IENCIRYSNPENKELSMVFTFHHL--KVDYPNGEKWTLAKFDFAKLKEIFSTW 300 (543)
T ss_pred CeEEEEEeCCCC---------------HHHHHhhhCCCCCeeCeEEChhhh--hchhccccccccCCCCHHHHHHHHHHH
Confidence 89999998541 3445555532 2346677777531 1111111 111221111000
Q ss_pred -CCccCCCCCceeecccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 292 -PGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 292 -~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
..... .....++|++|||++|..++++... .+.++|+++++|+||+|+||||||+||.+.
T Consensus 301 ~~~~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~ 365 (543)
T TIGR02403 301 QTGMQA-GGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNP 365 (543)
T ss_pred HHhccc-cCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCC
Confidence 00100 1123357999999999999887332 246788899999999999999999999975
No 8
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.1e-58 Score=459.27 Aligned_cols=308 Identities=20% Similarity=0.255 Sum_probs=216.9
Q ss_pred hhcCCCCCCceEEEeeecCCCC--------------C--------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC----
Q 018278 15 AIFLPFTSPALLFQGFNWESSN--------------K--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS---- 68 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~~~--------------~--------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~---- 68 (358)
...|.|++++||||+|. |.+. + .||||+||+++|+||++||||+|||+||+++
T Consensus 181 ~~~~~~W~~aviYqI~~-DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~ 259 (683)
T PRK09505 181 AAAPFDWHNATVYFVLT-DRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGW 259 (683)
T ss_pred CCCChhhccCcEEEEeh-hhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccc
Confidence 45677889999999984 3321 1 1699999999999999999999999999986
Q ss_pred -----------CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC-C--------------
Q 018278 69 -----------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK-D-------------- 122 (358)
Q Consensus 69 -----------~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~-~-------------- 122 (358)
.++|||++.||+.|| ++|||++||++||++||++||+||+|+|+||++..+. +
T Consensus 260 ~~~g~~g~~~~~~yhgY~~~D~~~id-~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~ 338 (683)
T PRK09505 260 VGGGTKGDFPHYAYHGYYTLDWTKLD-ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGD 338 (683)
T ss_pred cccccccCCCcCCCCCCCccccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcc
Confidence 267999999999999 9999999999999999999999999999999995421 0
Q ss_pred -----CCcceeeccCCCCCCCCCCCCCcc---cCCCCccCCC---------C------CCCCCCCCCCCCCCCCCC----
Q 018278 123 -----GRGIYCIFEGGTSDDRLDWGPSFI---CRGDKEYSDG---------Q------GNDDTGEDFQPAPDIDHL---- 175 (358)
Q Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---------~------~~~~~~~~~~~~~dln~~---- 175 (358)
....|..|.+.. ...|++... ..+...|..+ . +.....+....+||||++
T Consensus 339 ~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~ 415 (683)
T PRK09505 339 ENKKTLGERWSDWQPAA---GQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQA 415 (683)
T ss_pred ccccccCcccccccccc---cccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccc
Confidence 011121111100 111211100 0000111100 0 001112234567888776
Q ss_pred -------------------CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHh----------c-------
Q 018278 176 -------------------NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN----------T------- 219 (358)
Q Consensus 176 -------------------n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~----------~------- 219 (358)
||+||++|++++++|++++||||||+|+|+|++.+||+++..+ .
T Consensus 416 ~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~ 495 (683)
T PRK09505 416 SGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALD 495 (683)
T ss_pred cccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4599999999999999989999999999999999999988332 1
Q ss_pred -CCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC--chhhhhhcCCCCCCccC
Q 018278 220 -SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG--ELWRLKDSNGKPPGFIG 296 (358)
Q Consensus 220 -~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 296 (358)
.+++++||+|.... ....|.. .++++++||++...+..++.. .+........ ...
T Consensus 496 ~~~~~~vGEvw~~~~----------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~- 553 (683)
T PRK09505 496 DAPFWMTGEAWGHGV----------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL- 553 (683)
T ss_pred cCCeEEEEEecCCch----------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc-
Confidence 13789999996411 1134443 468889999988665544321 1211111110 000
Q ss_pred CCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 297 ILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 297 ~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
.....++|++|||++|+.+.... ..+.++|++++||+||+|+||||||+|+.+
T Consensus 554 -~~~~~l~FLdNHDt~Rf~s~~~~-~~~~klAaall~tlpGiP~IYYGdEiGm~g 606 (683)
T PRK09505 554 -QDFNVLSYLSSHDTRLFFEGGQS-YAKQRRAAELLLLAPGAVQIYYGDESARPF 606 (683)
T ss_pred -CccceeecccCCChhhhhhhcCc-hHHHHHHHHHHHhCCCCcEEEechhhCccC
Confidence 12345789999999999887763 367899999999999999999999999864
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.7e-58 Score=453.72 Aligned_cols=315 Identities=17% Similarity=0.236 Sum_probs=229.8
Q ss_pred hcCCCCCCceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHH
Q 018278 16 IFLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~ 91 (358)
..|.|++++||||+|. -+++++++|||+||+++|+||++||||+|||+||++++. +|||++.||++|| |+|||++
T Consensus 3 ~~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-~~~Gt~~ 81 (551)
T PRK10933 3 NLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-PTYGTLD 81 (551)
T ss_pred CcchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-cccCCHH
Confidence 3588999999999985 244566789999999999999999999999999999876 6899999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCC-CCCCCCCCcccCCCCccCCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDD 161 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (358)
||++||++||++||+||+|+|+||+|.+|++ +..+|+.|.++.+. .+..|...+ ....+.|....+.+.
T Consensus 82 d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~y 160 (551)
T PRK10933 82 DFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF-GGSAWRWHAESEQYY 160 (551)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC-CCccccccCCCCceE
Confidence 9999999999999999999999999998863 34567666654321 233443322 122344555555666
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-----------------------HHHHHHHHh
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------SITKVYMEN 218 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------------------~~~~~~~~~ 218 (358)
...+...+||||++||+||++|++++++|++ +||||||+|+|+++.. +||+++.+.
T Consensus 161 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 161 LHLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRD 239 (551)
T ss_pred eecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHH
Confidence 6777889999999999999999999999997 9999999999999863 567776443
Q ss_pred c-C--CCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHHHHHcCc--------hhhhhh
Q 018278 219 T-S--PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAVQGE--------LWRLKD 286 (358)
Q Consensus 219 ~-~--p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~~~~~~~--------~~~~~~ 286 (358)
. + .++++||+|... .+.+..|.... ..+...|+|.. .......+. ...+..
T Consensus 240 ~~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~ 302 (551)
T PRK10933 240 VFTPRGLMTVGEMSSTS---------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKT 302 (551)
T ss_pred hhcccCcEEEEeecCCC---------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHH
Confidence 2 2 268999998531 34555664322 33556676642 221111111 111111
Q ss_pred cCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc----hHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 287 SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD----KVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~----~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
.......... .......|++|||++|..++++.+.. .++++.+++||+||+|+||||||+||.+
T Consensus 303 ~~~~~~~~~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~ 370 (551)
T PRK10933 303 LFRHWQQGMH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTN 370 (551)
T ss_pred HHHHHHHhhc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCC
Confidence 1100000000 01223579999999999999874322 3567778899999999999999999998
No 10
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=2.1e-59 Score=434.33 Aligned_cols=292 Identities=24% Similarity=0.410 Sum_probs=210.3
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
|||+||++||||||+|||++|||+||++++ ++|||+|.||++|| |+|||++||++||++||++||+||+|+|+||++.
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-cccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 899999999999999999999999999997 79999999999999 9999999999999999999999999999999999
Q ss_pred cCCC----------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 119 ERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 119 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
+|+. +..+|+.|.+.....+..|... .....|... .......++..++|||++||+||++|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSY---FGGSNWEYD-DWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCS---TTTSSEESC-HHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccc---ccccccccc-ccccccccccccchhhhhhhhhhhhhccccc
Confidence 9862 1234444433212222222210 011111100 0000046788999999999999999999999
Q ss_pred HHHHhcCCCeEeeccCCCCCHHHHHHHHHhc---CC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCcee
Q 018278 189 WLKTEIGFDGWRFDFVKGYAPSITKVYMENT---SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVA 263 (358)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (358)
+|++ +||||||+|+|++++.++|+++.++. .| .+++||.+... ...+..+... ......
T Consensus 156 ~w~~-~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~---------------~~~~~~~~~~~~~~~~~ 219 (316)
T PF00128_consen 156 FWIE-EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD---------------NEDLRQYAYDGYFDLDS 219 (316)
T ss_dssp HHHH-TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS---------------HHHHHHHHHHGTTSHSE
T ss_pred chhh-ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC---------------ccccchhhhccccccch
Confidence 9998 78999999999999999999995543 25 88999999651 2223333222 222333
Q ss_pred eeccchHHHHHHHH----cCc--hhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCC
Q 018278 264 AFDFTTKGILQAAV----QGE--LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPG 337 (358)
Q Consensus 264 ~~df~~~~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG 337 (358)
.+++.......... .++ ...+.......... ...+...++|++|||+.|..+.++....++++|++++||+||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG 298 (316)
T PF00128_consen 220 VFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSS-YPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPG 298 (316)
T ss_dssp EEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHH-STTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSS
T ss_pred hhcccccccccchhhhhccccchhhhhhhhhhhhhhh-hcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCC
Confidence 56665554444333 111 12221111100000 111457799999999999988887444489999999999999
Q ss_pred eeeeecCccccCCCCC
Q 018278 338 TPCIVISVTYPLFHPL 353 (358)
Q Consensus 338 ~P~IyyGdE~G~~~~~ 353 (358)
+|+||||||+|+.+..
T Consensus 299 ~P~iy~G~E~g~~~~~ 314 (316)
T PF00128_consen 299 IPMIYYGDEIGMTGSK 314 (316)
T ss_dssp EEEEETTGGGTBBTSS
T ss_pred ccEEEeChhccCCCCC
Confidence 9999999999998764
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.1e-51 Score=404.96 Aligned_cols=296 Identities=23% Similarity=0.308 Sum_probs=199.7
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
++.|||++...+.. + .|||+||+++|+|||+||||+||||||++++ .+|||++.||++|+ ++|||.+|||+||++
T Consensus 92 ~~~viYE~hv~~f~-~-~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~ 168 (542)
T TIGR02402 92 EEAVIYELHVGTFT-P-EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDA 168 (542)
T ss_pred cccEEEEEEhhhcC-C-CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHH
Confidence 56799999864333 2 6999999999999999999999999998876 47999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH--
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP-- 177 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~-- 177 (358)
||++||+||||+|+||++.++. |.. . ..+ |... .....| .+++|+++|
T Consensus 169 aH~~Gi~VilD~V~NH~~~~~~-----~~~--~---~~~--y~~~---~~~~~w---------------g~~~n~~~~~~ 218 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGPEGN-----YLP--R---YAP--YFTD---RYSTPW---------------GAAINFDGPGS 218 (542)
T ss_pred HHHCCCEEEEEEccCCCCCccc-----ccc--c---cCc--cccC---CCCCCC---------------CCccccCCCcH
Confidence 9999999999999999987643 110 0 000 1100 000111 135999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH----HHHHHH---HHhcCC----CeEEEeccCCCC-CCC-------C
Q 018278 178 -RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP----DFAVGEKWDSLS-YGP-------D 237 (358)
Q Consensus 178 -~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----~~~~~~---~~~~~p----~~~~gE~~~~~~-~~~-------~ 237 (358)
+||++|++++++|++++||||||+|++.++.. +||+++ +++.+| ++++||.+...+ ... .
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~ 298 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYG 298 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccc
Confidence 99999999999999999999999999998853 488776 444443 689999985421 110 0
Q ss_pred CCCCCCCCCchhhHHHHHHhcCC-ceeeeccc---hHHHHHHHH--cCchhhhhh-cCCCCCCccCCCCCceeecccCCC
Q 018278 238 GKPDANQDGHRGALKDWVQAAGG-AVAAFDFT---TKGILQAAV--QGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~df~---~~~~l~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
-+..|++ .++..+..++.+... ....+.-+ +...+...+ .+....... ..+.+.. ...+.+.++|++|||
T Consensus 299 ~d~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~vnfl~nHD 375 (542)
T TIGR02402 299 LDAQWND-DFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSG--DLPPHRFVVFIQNHD 375 (542)
T ss_pred eEEEECc-hHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCC--CCCHHHEEEEccCcc
Confidence 0123332 234444444432110 00000001 111111110 010000000 0000000 013467899999999
Q ss_pred C-------CcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 311 T-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 311 ~-------~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
+ .|+..... .++.++|.+++||+||+||||||||+|+++++..
T Consensus 376 ~~gn~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~f 425 (542)
T TIGR02402 376 QIGNRALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQF 425 (542)
T ss_pred cccccchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCcc
Confidence 7 57766553 4788999999999999999999999999998643
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=5.2e-50 Score=400.60 Aligned_cols=298 Identities=21% Similarity=0.310 Sum_probs=200.6
Q ss_pred CCceEEEeeecCCC-------CCCCCchHHHHhh--hhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCC
Q 018278 22 SPALLFQGFNWESS-------NKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (358)
Q Consensus 22 ~~~v~~q~F~~~~~-------~~~~G~~~gl~~~--L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (358)
++.|||++...+.. .+..|||+||+++ |+|||+||||+||||||+++. .+|||++.|||+
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 45799999753221 2346999999985 999999999999999999874 369999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCC
Q 018278 82 LDASKY---GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (358)
Q Consensus 82 id~~~~---Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (358)
|+ ++| |+.+|||+||++||++||+||||+|+||++..+... ....|++... ..|.... . +..+
T Consensus 234 ~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~--~~~~~~~~d~---~~yy~~~--~------~~~~ 299 (688)
T TIGR02100 234 PE-PRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELG--PTLSFRGIDN---ASYYRLQ--P------DDKR 299 (688)
T ss_pred cC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCC--CcccccCCCC---CcceEec--C------CCCc
Confidence 99 999 679999999999999999999999999999875311 1111221100 0111000 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH---------HHHHHHHHh-cCC-CeEEEe
Q 018278 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------SITKVYMEN-TSP-DFAVGE 227 (358)
Q Consensus 159 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~---------~~~~~~~~~-~~p-~~~~gE 227 (358)
.+. ......++||+++|+||++|++++++|++++||||||+|++..++. ++++++.+. ..| ++++||
T Consensus 300 ~~~--~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE 377 (688)
T TIGR02100 300 YYI--NDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAE 377 (688)
T ss_pred eec--CCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEe
Confidence 010 1112235699999999999999999999989999999999998864 577776553 345 789999
Q ss_pred ccCCCC--CCCC----CCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCc
Q 018278 228 KWDSLS--YGPD----GKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN 301 (358)
Q Consensus 228 ~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (358)
.|.... +..+ ....|| +.+++.+++|+.+..+. ...+...+.+..... . .....|.+
T Consensus 378 ~W~~~~~~~~~~~~~~~~~~~N-d~frd~ir~f~~g~~~~--------~~~~~~~l~gs~~~~-------~-~~~~~~~~ 440 (688)
T TIGR02100 378 PWDIGPGGYQVGNFPPGWAEWN-DRYRDDMRRFWRGDAGM--------IGELANRLTGSSDLF-------E-HNGRRPWA 440 (688)
T ss_pred eecCCCCcccccCCCCceEEec-HHHHHHHHHHHcCCCCc--------HHHHHHHHhCCHhhc-------c-ccCCCcCE
Confidence 997632 2111 112344 34455555555432211 111222222211000 0 01124678
Q ss_pred eeecccCCCCCcCcCCCCC--------------------------------------CcchHHHHHHHHHcCCCeeeeec
Q 018278 302 AVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIVI 343 (358)
Q Consensus 302 ~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~l~~~pG~P~Iyy 343 (358)
+|||+++||+.++..++.+ ..++.|+|++++|++||+|||||
T Consensus 441 ~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~ 520 (688)
T TIGR02100 441 SINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLA 520 (688)
T ss_pred EEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeee
Confidence 8999999999664332110 02367899999999999999999
Q ss_pred CccccCCCC
Q 018278 344 SVTYPLFHP 352 (358)
Q Consensus 344 GdE~G~~~~ 352 (358)
|||+|+++.
T Consensus 521 GdE~g~t~~ 529 (688)
T TIGR02100 521 GDEFGRTQQ 529 (688)
T ss_pred cHhhccCCC
Confidence 999999854
No 13
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=6.4e-50 Score=398.72 Aligned_cols=297 Identities=21% Similarity=0.278 Sum_probs=200.8
Q ss_pred ceEEEeeecCCC---CC---CCCchHHHHhh-----------hhhHHHcCCCEEEeCCCCCCCC----------CCCCCc
Q 018278 24 ALLFQGFNWESS---NK---AGGWYNSLKNS-----------IPDLSNAGITHVWLPPPSQSVA----------PQGYMP 76 (358)
Q Consensus 24 ~v~~q~F~~~~~---~~---~~G~~~gl~~~-----------L~yl~~LGv~~I~l~Pi~~~~~----------~~gY~~ 76 (358)
.|||+....+.. .. ..|+|.|++++ |+|||+||||+||||||+++.+ +|||++
T Consensus 128 ~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~ 207 (605)
T TIGR02104 128 AIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDP 207 (605)
T ss_pred cEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCC
Confidence 589988753322 11 25888888765 9999999999999999998753 499999
Q ss_pred cccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccC
Q 018278 77 GRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 148 (358)
Q Consensus 77 ~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
.|||+|+ ++||+ .+|||+||++||++||+||||+|+||++..... .|.+..+. |. ..
T Consensus 208 ~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~------~f~~~~~~----~~----~~ 272 (605)
T TIGR02104 208 LNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES------PFEKTVPG----YY----YR 272 (605)
T ss_pred ccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC------cccCCCCC----ee----EE
Confidence 9999999 99987 599999999999999999999999999853110 12221111 10 00
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeE
Q 018278 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFA 224 (358)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~ 224 (358)
.+..+.+..+..+ ..++|+++|+||++|++++++|++++||||||+|++++++.+||+++. ++.+| +++
T Consensus 273 -----~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 273 -----YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred -----ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEE
Confidence 0000011101111 136999999999999999999999999999999999999999999884 45566 889
Q ss_pred EEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCceeeeccchHHHHHHHH---------cCc---hhhhhhcCCCC
Q 018278 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAV---------QGE---LWRLKDSNGKP 291 (358)
Q Consensus 225 ~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~l~~~~---------~~~---~~~~~~~~~~~ 291 (358)
+||.|...+... .......... .-.....+++.++..++... .+. ...+...+...
T Consensus 346 igE~w~~~~~~~-----------~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~ 414 (605)
T TIGR02104 346 YGEGWDLGTPLP-----------PEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGS 414 (605)
T ss_pred EEccCCCCCCcc-----------hhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCC
Confidence 999997532100 0000000000 00123457777777665221 111 11222211100
Q ss_pred C-----CccCCCCCceeecccCCCCCcCcCCCCC---------CcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 292 P-----GFIGILPQNAVTFIDNHDTGSTQRLWPF---------PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 292 ~-----~~~~~~~~~~v~f~~nHD~~r~~~~~~~---------~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
. ......|...|+|++|||+.|+..++.. ..++.++|++++||+||+||||||||+|+++..
T Consensus 415 ~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g 490 (605)
T TIGR02104 415 IELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQG 490 (605)
T ss_pred hhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCC
Confidence 0 0112356789999999999887544321 134789999999999999999999999998644
No 14
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=2.9e-48 Score=369.90 Aligned_cols=295 Identities=17% Similarity=0.125 Sum_probs=219.8
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhh-hHHHcCCCEEEeCCCC-CCC-CCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPS-QSV-APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~-~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
+|+|++..|. |+.++ |||+||+++|| ||++| |++|||+|++ +++ +++||+|.||+.|| |+|||++||++|++
T Consensus 2 ~n~~~litY~-Ds~~~--GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VD-P~fGt~eDf~~L~~ 76 (495)
T PRK13840 2 KNKVQLITYA-DRLGD--GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVD-PRLGDWDDVKALGK 76 (495)
T ss_pred CCceEEEEec-cCCCC--CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcC-cccCCHHHHHHHHh
Confidence 7899999997 99974 89999999999 59999 9999999999 444 47999999999999 99999999999985
Q ss_pred HHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCC-CC--CCCCCCCCCcccCCC-----CccCCCCCC
Q 018278 99 AFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGG-TS--DDRLDWGPSFICRGD-----KEYSDGQGN 159 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~-----~~~~~~~~~ 159 (358)
||+||+|+|+||+|.+|++ +..+|+.+.+. .+ .++.+|...+..... +.+.++...
T Consensus 77 -----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~ 151 (495)
T PRK13840 77 -----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTR 151 (495)
T ss_pred -----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCce
Confidence 9999999999999999862 34566665431 11 123344332221111 123445556
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-------------HHHHHHHHhcC--CCeE
Q 018278 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-------------SITKVYMENTS--PDFA 224 (358)
Q Consensus 160 ~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-------------~~~~~~~~~~~--p~~~ 224 (358)
+.+..|...|||||+.||+|++++.+++++|++ .||||||+||+.++.+ +||+++....+ ...+
T Consensus 152 ~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~l 230 (495)
T PRK13840 152 LVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEV 230 (495)
T ss_pred EEeccCCcccceeCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEE
Confidence 677788899999999999999999999999998 8999999999976532 46766633222 3568
Q ss_pred EEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCcee
Q 018278 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAV 303 (358)
Q Consensus 225 ~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 303 (358)
++|++.... . .....++...+|||++...+..++ .++...+..++... |...+
T Consensus 231 l~Ei~~y~~--------------~-----~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~~-------p~~~~ 284 (495)
T PRK13840 231 LVEIHSYYK--------------T-----QIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEIR-------PRNAV 284 (495)
T ss_pred EEeCccccC--------------c-----cccccccccEEecchhhHHHHHHHHhCCchHHHHHHHhC-------CCccE
Confidence 899875310 0 000123578899999998887766 66666666665432 44457
Q ss_pred ecccCCCCCcC----------cCCC--------------------------------------------CCCcchHHHHH
Q 018278 304 TFIDNHDTGST----------QRLW--------------------------------------------PFPSDKVMLGY 329 (358)
Q Consensus 304 ~f~~nHD~~r~----------~~~~--------------------------------------------~~~~~~~~~a~ 329 (358)
+|+.|||.-.+ ..++ +.+.+|..+|.
T Consensus 285 n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ 364 (495)
T PRK13840 285 TVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAAR 364 (495)
T ss_pred EeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHH
Confidence 99999998544 1100 11234788999
Q ss_pred HHHHcCCCeeeeecCccccCCCCC
Q 018278 330 AYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 330 a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
+++|++||||.||||+|+|..+..
T Consensus 365 ai~~~~~GiP~iY~~~ll~~~ND~ 388 (495)
T PRK13840 365 AIQFFAPGIPQVYYVGLLAGPNDM 388 (495)
T ss_pred HHHHcCCCcceeeechhhccCccH
Confidence 999999999999999999986643
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.5e-48 Score=387.39 Aligned_cols=297 Identities=19% Similarity=0.229 Sum_probs=197.1
Q ss_pred CCceEEEeeecCCC-------CCCCCchHHHHh--hhhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCC
Q 018278 22 SPALLFQGFNWESS-------NKAGGWYNSLKN--SIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (358)
Q Consensus 22 ~~~v~~q~F~~~~~-------~~~~G~~~gl~~--~L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (358)
++.|||++...+.. .+..|+|+|+++ +|+|||+||||+||||||+++. .+|||++.|||+
T Consensus 149 ~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 149 GSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA 228 (658)
T ss_pred cccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccc
Confidence 45799998743322 233699999997 4999999999999999999863 469999999999
Q ss_pred CCCCCCCCH-----HHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCC
Q 018278 82 LDASKYGSQ-----ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG 156 (358)
Q Consensus 82 id~~~~Gt~-----~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (358)
|+ ++|||. +|||+||++||++||+||||+|+||++..+. ...+..+.+..... .-|. +.
T Consensus 229 ~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d~~~-yy~~------------~~ 292 (658)
T PRK03705 229 LD-PAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGIDNRS-YYWI------------RE 292 (658)
T ss_pred cc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCCCcc-ceEE------------CC
Confidence 99 999994 7999999999999999999999999986432 11121222111000 0010 01
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--HHH------HHHHH-hcCC-CeEEE
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--SIT------KVYME-NTSP-DFAVG 226 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--~~~------~~~~~-~~~p-~~~~g 226 (358)
.+.+..+ ....++||++||+||++|++++++|++++||||||+|+|.++.+ +|+ +++.. ...+ ++++|
T Consensus 293 ~g~~~~~--~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 293 DGDYHNW--TGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CCCcCCC--CCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEE
Confidence 1111111 12235799999999999999999999999999999999999863 243 33322 1233 78999
Q ss_pred eccCCCC--CCCC----CCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCC
Q 018278 227 EKWDSLS--YGPD----GKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300 (358)
Q Consensus 227 E~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (358)
|.|..+. +..+ +...|| +.+++.+++++...... .. .+...+.+.... . . .....|.
T Consensus 371 E~Wd~~~~~~~~g~~~~~~~~~N-d~fRd~ir~f~~~~~~~-------~~-~~~~~l~gs~~~-~------~-~~~~~p~ 433 (658)
T PRK03705 371 EPWDIGPGGYQVGNFPPPFAEWN-DHFRDAARRFWLHGDLP-------LG-EFAGRFAASSDV-F------K-RNGRLPS 433 (658)
T ss_pred ecccCCCChhhhcCCCcceEEEc-hHHHHHHHHHHccCCCc-------HH-HHHHHHhcchhh-c------c-ccCCCCC
Confidence 9997632 2211 122455 44566666665432211 00 111111221100 0 0 1123578
Q ss_pred ceeecccCCCCCcCcCCCCC--------------------------------------CcchHHHHHHHHHcCCCeeeee
Q 018278 301 NAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIV 342 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~l~~~pG~P~Iy 342 (358)
++||||++||+.++..++.+ ..++.|+|+++||+++|+||||
T Consensus 434 ~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~ 513 (658)
T PRK03705 434 ASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLL 513 (658)
T ss_pred eEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 89999999998554332110 1135688999999999999999
Q ss_pred cCccccCCCCC
Q 018278 343 ISVTYPLFHPL 353 (358)
Q Consensus 343 yGdE~G~~~~~ 353 (358)
+|||+|+++..
T Consensus 514 ~GdE~grtq~G 524 (658)
T PRK03705 514 AGDEHGHSQHG 524 (658)
T ss_pred hhHHhccCCCC
Confidence 99999998444
No 16
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.6e-48 Score=387.02 Aligned_cols=291 Identities=18% Similarity=0.201 Sum_probs=192.9
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
..+||+.-. .+..+ .|+|++|+++| +|||+||||+||||||++++ .+|||+++|||+|+ ++|||.+|||+||++
T Consensus 138 ~~~iYe~hv-~~~~~-~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~ 214 (613)
T TIGR01515 138 PVSIYELHL-GSWRH-GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDA 214 (613)
T ss_pred CceEEEEeh-hhccC-CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHH
Confidence 357888875 33333 49999999996 99999999999999999986 47999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
||++||+||||+|+||++.++.. +..|.+. + .|.. . +..... ...+ +.+++|++||+|
T Consensus 215 ~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~-~----~y~~----~------~~~~~~--~~~w-~~~~~~~~~~~V 272 (613)
T TIGR01515 215 CHQAGIGVILDWVPGHFPKDDHG----LAEFDGT-P----LYEH----K------DPRDGE--HWDW-GTLIFDYGRPEV 272 (613)
T ss_pred HHHCCCEEEEEecccCcCCccch----hhccCCC-c----ceec----c------CCccCc--CCCC-CCceecCCCHHH
Confidence 99999999999999999976421 1112110 0 0000 0 000000 0111 346799999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeeccCCCCC------------------------HHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
|++|++++++|+++|||||||+|+++++. .+||+++ +++.+| +++|||.+..
T Consensus 273 r~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~ 352 (613)
T TIGR01515 273 RNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTE 352 (613)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 99999999999999999999999986542 4799887 555667 8999998743
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccCCC
Q 018278 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
.. . .......+.-+++..+++.++..+...+.. ...+.................+ ..+++|||
T Consensus 353 ~~-------~--------~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~sHD 416 (613)
T TIGR01515 353 WP-------G--------VTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFSEN-FVLPLSHD 416 (613)
T ss_pred Cc-------c--------ccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhhhc-cccCCCCC
Confidence 11 0 011111111123334444444433333211 1101000000000000001111 23678999
Q ss_pred C-----CcCcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 311 T-----GSTQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 311 ~-----~r~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+ +|+....... .++.|++++++||+||+||||||+|+|+..+.+
T Consensus 417 ~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~ 469 (613)
T TIGR01515 417 EVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWN 469 (613)
T ss_pred CcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCC
Confidence 8 4444444432 257889999999999999999999999977643
No 17
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.3e-48 Score=370.02 Aligned_cols=293 Identities=17% Similarity=0.188 Sum_probs=218.8
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
|+|++.+|. |+.+++.|||+|++++ ||++ ||++|||+|++++++++||+|.||+.|| |+|||++||++|+++
T Consensus 1 n~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VD-P~~Gt~~Df~~L~~~--- 72 (470)
T TIGR03852 1 NKAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVD-PAFGDWSDVEALSEK--- 72 (470)
T ss_pred CCceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeC-cccCCHHHHHHHHHh---
Confidence 578999997 9999988999999988 9999 7999999999999999999999999999 999999999999997
Q ss_pred cCCEEEEEeecccccccCC-----------CCCcceee-----ccCCCCCCCCCCCCCcccC-----CCCccCCCCCCCC
Q 018278 103 KGIKCLADMVINHRTAERK-----------DGRGIYCI-----FEGGTSDDRLDWGPSFICR-----GDKEYSDGQGNDD 161 (358)
Q Consensus 103 ~Gi~VilD~V~NH~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 161 (358)
|+||+|+|+||+|.+|+ .+..+|+. |.++.+ +..++...+... ....+.++...++
T Consensus 73 --~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~-~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
T TIGR03852 73 --YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRP-TQEDVDLIYKRKDRAPYQEVTFADGSTEKV 149 (470)
T ss_pred --hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCc-cccccccccCCCCCCCCCceEEcCCCCeEE
Confidence 89999999999999985 23445665 222111 001111111000 1123444555778
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-----------HH---HHHHHHH-hcCC-CeEE
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------PS---ITKVYME-NTSP-DFAV 225 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------~~---~~~~~~~-~~~p-~~~~ 225 (358)
+.+|...|||||+.||+|++++.+++++|++ .||||||+||+.++. ++ +++.+.+ ...| ++++
T Consensus 150 w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll 228 (470)
T TIGR03852 150 WNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEIL 228 (470)
T ss_pred EccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEE
Confidence 8899999999999999999999999999997 999999999995442 33 4454433 2344 8899
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceee
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVT 304 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 304 (358)
+|++..-.+. +. ..+....+|+|++...+-.++ .++...+.+++... |...++
T Consensus 229 ~E~~~~~~~~------------------~~-~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~-------p~~~~n 282 (470)
T TIGR03852 229 PEIHEHYTIQ------------------FK-IAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKS-------PMKQFT 282 (470)
T ss_pred eHhhhhcccc------------------cc-cccceeEEccCccchhhHHHhhccCHHHHHHHHHhC-------cccceE
Confidence 9997431110 00 013567789999988777665 67777777776532 334479
Q ss_pred cccCCCCC--------------------------cCc---------------------CCCCCCcchHHHHHHHHHcCCC
Q 018278 305 FIDNHDTG--------------------------STQ---------------------RLWPFPSDKVMLGYAYILTHPG 337 (358)
Q Consensus 305 f~~nHD~~--------------------------r~~---------------------~~~~~~~~~~~~a~a~l~~~pG 337 (358)
|++|||.- +.. +.++.+.+|..+|.|++|++||
T Consensus 283 fL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpG 362 (470)
T TIGR03852 283 TLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPG 362 (470)
T ss_pred EeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCC
Confidence 99999980 111 0112245678899999999999
Q ss_pred eeeeecCccccCCCCC
Q 018278 338 TPCIVISVTYPLFHPL 353 (358)
Q Consensus 338 ~P~IyyGdE~G~~~~~ 353 (358)
||.||||+|+|+.+..
T Consensus 363 iP~iYy~~llg~~nD~ 378 (470)
T TIGR03852 363 IPQVYYVGLLAGKNDI 378 (470)
T ss_pred CceEEechhhcCCchH
Confidence 9999999999997654
No 18
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.5e-48 Score=389.50 Aligned_cols=293 Identities=20% Similarity=0.255 Sum_probs=190.7
Q ss_pred CCceEEEeeecC---CCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHH
Q 018278 22 SPALLFQGFNWE---SSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 22 ~~~v~~q~F~~~---~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
+..+||++.... ...++.|||++|+++| +|||+||||+||||||++++ .+|||++.|||+|+ ++|||++|||+
T Consensus 146 ~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~-~~~Gt~~d~k~ 224 (633)
T PRK12313 146 RPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT-SRYGTPEDFMY 224 (633)
T ss_pred CCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC-CCCCCHHHHHH
Confidence 345899987522 2223359999999995 99999999999999999987 47999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
||++||++||+||||+|+||++.++.. ...|.+ .+. .. +.+....+. ..+ ..++||++
T Consensus 225 lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~-~~~--~~------------~~~~~~~~~--~~w-~~~~~n~~ 282 (633)
T PRK12313 225 LVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDG-TPL--YE------------YQDPRRAEN--PDW-GALNFDLG 282 (633)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----ccccCC-Ccc--ee------------ecCCCCCcC--CCC-CCcccCCC
Confidence 999999999999999999999876421 111211 000 00 000000000 011 13579999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC-----------------------CHHHHHHH---HHhcCC-CeEEEec
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-----------------------APSITKVY---MENTSP-DFAVGEK 228 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i-----------------------~~~~~~~~---~~~~~p-~~~~gE~ 228 (358)
||+||++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|||.
T Consensus 283 ~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 283 KNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 99999999999999999999999999998754 15788887 556677 8999998
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc-hhhhhhcCCCCCCccCCCCCceeeccc
Q 018278 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQNAVTFID 307 (358)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~f~~ 307 (358)
+...+.. ......+.-+++..+++.+...+...+..+ ..+-................ ..++++
T Consensus 363 ~~~~~~~---------------~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~l~~ 426 (633)
T PRK12313 363 STAWPKV---------------TGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMYAFSE-NFVLPF 426 (633)
T ss_pred CCCCccc---------------cccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhhhhhc-ccccCC
Confidence 7542100 000000011122223333333222222111 00000000000000000111 124678
Q ss_pred CCCC-----CcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 308 NHDT-----GSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 308 nHD~-----~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
|||+ +|+...+..+. .+++++++++||+||+||||||+|+|+..+.
T Consensus 427 sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~ 481 (633)
T PRK12313 427 SHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEW 481 (633)
T ss_pred CCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccC
Confidence 9999 45555544333 5688999999999999999999999987654
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.4e-46 Score=395.00 Aligned_cols=296 Identities=17% Similarity=0.204 Sum_probs=193.7
Q ss_pred CceEEEeeecCC-------CCCCCCchHHHH--hhhhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCCC
Q 018278 23 PALLFQGFNWES-------SNKAGGWYNSLK--NSIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDL 82 (358)
Q Consensus 23 ~~v~~q~F~~~~-------~~~~~G~~~gl~--~~L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~i 82 (358)
+.|||+....+. .++..|++++|. ++|+|||+||||+||||||+++. +||||++.|||+|
T Consensus 158 d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~ 237 (1221)
T PRK14510 158 DSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP 237 (1221)
T ss_pred cCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc
Confidence 468887653211 122345666666 44669999999999999999864 3689999999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCC
Q 018278 83 DASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 83 d~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
+ |+|| +.+|||+||++||++||+||||+|+|||+.++... ....+.+....+++.... .....+
T Consensus 238 d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~--p~~~~~~~d~~~yy~~~~-----------~~~~~y 303 (1221)
T PRK14510 238 D-PRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG--PTLSAYGSDNSPYYRLEP-----------GNPKEY 303 (1221)
T ss_pred C-hhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC--CcccccCCCCCCceEecC-----------CCCCcc
Confidence 9 9999 99999999999999999999999999999875411 000111111111100000 000111
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC---CHHHHHHH---HHhcCC-CeE-----EEec
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY---APSITKVY---MENTSP-DFA-----VGEK 228 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i---~~~~~~~~---~~~~~p-~~~-----~gE~ 228 (358)
.....+..+ +|+++|+|++++++++++|++ +||||||||+|.++ +.+||+++ +++++| .++ +||.
T Consensus 304 ~~~~G~gn~--~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~ 380 (1221)
T PRK14510 304 ENWWGCGNL--PNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEV 380 (1221)
T ss_pred cCCCCCCCc--cccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEec
Confidence 111222222 677799999999999999999 99999999999999 88898775 566655 444 9999
Q ss_pred cCCCC--CCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCCCCCC-c--cCCCCC
Q 018278 229 WDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPG-F--IGILPQ 300 (358)
Q Consensus 229 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~ 300 (358)
|...+ +..+..+. ....+|+.++..++..+.++ ...+...+..... . ....+.
T Consensus 381 Wd~~~~~~~~g~f~~-------------------~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~ 441 (1221)
T PRK14510 381 WDDGLGGYQYGKFPQ-------------------YWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFS 441 (1221)
T ss_pred ccCCCCccccCCCCc-------------------ceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcc
Confidence 97632 22111110 01234555555554444332 1111111110000 0 122467
Q ss_pred ceeecccCCCCCcCcCCCCC--------------------------------------CcchHHHHHHHHHcCCCeeeee
Q 018278 301 NAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIV 342 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~l~~~pG~P~Iy 342 (358)
.++||++|||+.|+..++.+ ..++.++|++++||++||||||
T Consensus 442 ~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy 521 (1221)
T PRK14510 442 RSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLY 521 (1221)
T ss_pred cceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 78999999999886654431 0235789999999999999999
Q ss_pred cCccccCCCCCC
Q 018278 343 ISVTYPLFHPLN 354 (358)
Q Consensus 343 yGdE~G~~~~~n 354 (358)
||||+|.++..|
T Consensus 522 ~GdE~g~tq~Gn 533 (1221)
T PRK14510 522 YGDEAGRSQNGN 533 (1221)
T ss_pred cchhcccccCCC
Confidence 999999655443
No 20
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.3e-47 Score=382.43 Aligned_cols=293 Identities=19% Similarity=0.236 Sum_probs=186.3
Q ss_pred CceEEEeeecCC----CCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHHHH
Q 018278 23 PALLFQGFNWES----SNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 23 ~~v~~q~F~~~~----~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
..+||++...+. .+.+.|||++|+++| +|||+||||+||||||++++. +|||++.|||+|+ |+|||.+|||+
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-~~~Gt~~dfk~ 319 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-SRFGTPDDFRY 319 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-cccCCHHHHHH
Confidence 358888874221 223358999999996 999999999999999998763 7999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
||++||++||+||||+|+||++.++.. +..|.+...+...++. .+.. ..+ +..++|++
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~~~~--------------~~~~---~~w-~~~~~n~~ 377 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHADPR--------------EGEH---PDW-GTLIFNYG 377 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceeccCCc--------------CCcc---CCC-CCccccCC
Confidence 999999999999999999999876421 1112110000000000 0000 001 11258999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-CeEEEe
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGE 227 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p-~~~~gE 227 (358)
||+||++|++++++|++++||||||+|++.++ +.+||+++ +++.+| +++|||
T Consensus 378 ~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 378 RNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999998655 24788887 556677 889999
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHH-HHHHHHcCchhhhhhcCCCCCCccCCCCCceeecc
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-ILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 306 (358)
.+...+.. ..+.+ .+..+++..+++.++. .+.........+.................+ .+++
T Consensus 458 ~~~~~~~~--~~~~~-------------~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~l~ 521 (726)
T PRK05402 458 ESTAWPGV--TRPTE-------------EGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYSEN-FVLP 521 (726)
T ss_pred CCCCCcCc--ccccc-------------CCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhhcc-ccCC
Confidence 76431100 00000 0001122222222221 111111110000000000000000001111 3477
Q ss_pred cCCCCCc-----CcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 307 DNHDTGS-----TQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 307 ~nHD~~r-----~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+|||+.+ +......+ .+++|+|++++||+||+||||||||+|+.++.+
T Consensus 522 ~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~ 578 (726)
T PRK05402 522 LSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWN 578 (726)
T ss_pred CCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCC
Confidence 8999953 33333322 246789999999999999999999999997654
No 21
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=3.7e-46 Score=383.08 Aligned_cols=300 Identities=21% Similarity=0.364 Sum_probs=205.9
Q ss_pred CCceEEEeeecCCCCC---------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-------------------C-CCC
Q 018278 22 SPALLFQGFNWESSNK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------V-APQ 72 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~---------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-------------------~-~~~ 72 (358)
.+.|||++...+...+ ..|+|+||+++|+|||+||||+||||||++. . .+|
T Consensus 450 ~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynW 529 (1111)
T TIGR02102 450 EDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNW 529 (1111)
T ss_pred cceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccccc
Confidence 4579998875433221 3599999999999999999999999999851 1 149
Q ss_pred CCCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCC
Q 018278 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
||+|.+||+++ ++||+ .+|||+||++||++||+||||+|+||++..+. |.+..+. |...
T Consensus 530 GYdp~~yfape-~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~----Yy~~ 596 (1111)
T TIGR02102 530 GYDPQNYFALS-GMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPN----YYHF 596 (1111)
T ss_pred CCCcCcCcccc-cccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCC----ceEe
Confidence 99999999999 99998 58999999999999999999999999987653 2221111 1000
Q ss_pred cccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC
Q 018278 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP 221 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p 221 (358)
.+..+..... ....+++.++++||++|++++++|+++|||||||||++.+++.++++.+. ++.+|
T Consensus 597 ---------~~~~G~~~~~---~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP 664 (1111)
T TIGR02102 597 ---------MDADGTPRTS---FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINP 664 (1111)
T ss_pred ---------eCCCCCcccc---cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCc
Confidence 0000010000 01235899999999999999999999999999999999999999887774 45677
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH---------cC---chhhhhhcC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QG---ELWRLKDSN 288 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~---------~~---~~~~~~~~~ 288 (358)
++++||.|.... +...+. .......++.... ....|+..++..++..+ +| ....+...+
T Consensus 665 ~~~liGE~W~~~~----g~~~~~---~~~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i 736 (1111)
T TIGR02102 665 NIIMIGEGWRTYA----GDEGDP---VQAADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNI 736 (1111)
T ss_pred CEEEEEecccccC----CCCccc---ccccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhh
Confidence 889999997411 000000 0001112222221 24456666666665321 11 112222222
Q ss_pred C-CCCCccCCCCCceeecccCCCCCcCcCCCCC----C----------cchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 289 G-KPPGFIGILPQNAVTFIDNHDTGSTQRLWPF----P----------SDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 289 ~-~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~----~----------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
. .........|.+.|+|++|||+.++...+.. + .+|.++|.+++|+++|||+|++|||++.++..
T Consensus 737 ~g~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~g 816 (1111)
T TIGR02102 737 KAQPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQF 816 (1111)
T ss_pred cCCccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCC
Confidence 1 1111112468899999999999876433221 0 13778999999999999999999999999887
Q ss_pred C
Q 018278 354 N 354 (358)
Q Consensus 354 n 354 (358)
|
T Consensus 817 n 817 (1111)
T TIGR02102 817 R 817 (1111)
T ss_pred C
Confidence 6
No 22
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-45 Score=365.64 Aligned_cols=291 Identities=18% Similarity=0.135 Sum_probs=189.4
Q ss_pred ceEEEeeecCC--CCCC-CCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 24 ALLFQGFNWES--SNKA-GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 24 ~v~~q~F~~~~--~~~~-~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
.+||++-.-.. ..++ -|+|++++++| +|||+||||+|+||||++.+ .+|||++.+||+|+ ++|||.+|||+||
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv 223 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLV 223 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHH
Confidence 58888753111 1222 37999999997 89999999999999999975 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~ 177 (358)
++||++||+||||+|+||++.++.. ...|++...+...++.. . ....|.. ..+|+++|
T Consensus 224 ~~~H~~gi~VilD~v~nH~~~~~~~----l~~~dg~~~y~~~~~~~---------------g--~~~~w~~-~~~~~~~~ 281 (639)
T PRK14706 224 NHLHGLGIGVILDWVPGHFPTDESG----LAHFDGGPLYEYADPRK---------------G--YHYDWNT-YIFDYGRN 281 (639)
T ss_pred HHHHHCCCEEEEEecccccCcchhh----hhccCCCcceeccCCcC---------------C--cCCCCCC-cccCCCCH
Confidence 9999999999999999999876421 11121111000111000 0 0011111 13899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeeccCCCC----------------------CHHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY----------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i----------------------~~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
+||++|++++++|++++||||||+|+++++ ..+||+++ +++.+| +++|||.+++
T Consensus 282 eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~ 361 (639)
T PRK14706 282 EVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTS 361 (639)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 999999999999999999999999999886 23677776 566677 8999999864
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceeecccCCC
Q 018278 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
.+ . ....... ..+++..+++.....+...+ .....+.................+ ..+++|||
T Consensus 362 ~~-------~--------v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~~~e~-~il~~SHD 424 (639)
T PRK14706 362 FP-------G--------VTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYRTSEN-YVLAISHD 424 (639)
T ss_pred Cc-------C--------cccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhhcccc-EecCCCCc
Confidence 21 0 0111111 12233333433333222222 122222111100000011111122 23789999
Q ss_pred CCcCcC--C---CCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 311 TGSTQR--L---WPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 311 ~~r~~~--~---~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+.+... + ...+ .+++++++++++|+||+|+||||+|+|...+.+
T Consensus 425 ev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~ 477 (639)
T PRK14706 425 EVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWN 477 (639)
T ss_pred cccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCC
Confidence 987532 1 1111 256889999999999999999999999765443
No 23
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=363.52 Aligned_cols=321 Identities=22% Similarity=0.308 Sum_probs=205.8
Q ss_pred ceEEEeeec---CCCC------CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHH
Q 018278 24 ALLFQGFNW---ESSN------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADL 93 (358)
Q Consensus 24 ~v~~q~F~~---~~~~------~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~ 93 (358)
+|+||+|.- ++++ +|+|||+||+++||||++|||++|||+||+++ ..+|||++.||+.|| |.|||++||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id-~~~Gt~~d~ 79 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-PHFGTEEDF 79 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcC-cccCCHHHH
Confidence 478888751 4445 55699999999999999999999999999999 679999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccccCCC----------CCc-ceeeccCCCC--CCCCCCCCCcccCCCCccCCCCCCC
Q 018278 94 KSLIQAFRQKGIKCLADMVINHRTAERKD----------GRG-IYCIFEGGTS--DDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
++||++||++||+||+|+|+||+|.+|+. +.. +|+.|.+... ..+.+|...+. ...+.+ ...+.+
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 157 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFG-GDAWTW-GNTGEY 157 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcC-CCCCCc-CCCCce
Confidence 99999999999999999999999999861 122 5555554221 12333322221 111222 334567
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-----------HHHHHH---HHhcCC-CeEE
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------SITKVY---MENTSP-DFAV 225 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------~~~~~~---~~~~~p-~~~~ 225 (358)
..+.+...++|||+.||+||+++.+++++|++ +||||||+|+++++.+ .++..+ +++..+ ++..
T Consensus 158 ~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (505)
T COG0366 158 YLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIY 236 (505)
T ss_pred EEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999 9999999999999987 445444 232222 2222
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceee
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVT 304 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 304 (358)
++.+............. ... ............+++.....-.... ......+....................
T Consensus 237 ~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T COG0366 237 GEAITDVGEAPGAVKED------FAD-NTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNL 309 (505)
T ss_pred Ccceeeeeccccccchh------hhh-ccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhh
Confidence 22222100000000000 000 0000001112222222211100000 000000000000000000000111234
Q ss_pred cccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 305 FIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 305 f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
|.+|||++|..+...... ...+++.+++++++|+|+||||+|+|+.+..+.
T Consensus 310 ~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~ 364 (505)
T COG0366 310 FLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDP 364 (505)
T ss_pred hhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCc
Confidence 899999999998876544 567788888899999999999999999987665
No 24
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-45 Score=355.58 Aligned_cols=326 Identities=27% Similarity=0.334 Sum_probs=227.5
Q ss_pred cCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHH
Q 018278 17 FLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.++|++.+++||++.- ++.+++.||++||++|||||++||||+|||+||++++. ++||++.||+.|+ |+|||++|
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~-p~fGt~ed 89 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLR-PRFGTEED 89 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhc-ccccHHHH
Confidence 6899999999998751 44566789999999999999999999999999999985 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCCCC---------CcceeeccCCCC------CCCCCCCCCcccCCCCccCCCC
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERKDG---------RGIYCIFEGGTS------DDRLDWGPSFICRGDKEYSDGQ 157 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~---------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 157 (358)
|++||.++|++||++|+|+|+||++.+|++. ..+|+.+.++.. .++..|.+.+. ...+.+..+.
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~-~s~~~~~e~~ 168 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFG-GSAWPFDEGR 168 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhc-cccCcccccc
Confidence 9999999999999999999999999877521 224555555432 23556655443 3345666677
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCC
Q 018278 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP 236 (358)
Q Consensus 158 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~-~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~ 236 (358)
..+..+.+...+||||++||+|++.+.++++ +|++ +||||||+|+++++..+++. ..-...|.+.+||.+.+.++..
T Consensus 169 ~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~ 246 (545)
T KOG0471|consen 169 QKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVA 246 (545)
T ss_pred cceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhh
Confidence 8888889999999999999999999999999 7776 99999999999999998888 4445567888999888755332
Q ss_pred CCCCCCCCCCchh--hHHHHHHhcCCceeeeccchHHHHHHHH------------cCchh--------------------
Q 018278 237 DGKPDANQDGHRG--ALKDWVQAAGGAVAAFDFTTKGILQAAV------------QGELW-------------------- 282 (358)
Q Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~df~~~~~l~~~~------------~~~~~-------------------- 282 (358)
.....+..+.... .+..+-.........+.+.-...+.... +....
T Consensus 247 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~ 326 (545)
T KOG0471|consen 247 YQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVA 326 (545)
T ss_pred cccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccch
Confidence 2222222111111 1111111111112222221111111000 11100
Q ss_pred -----hhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 283 -----RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 283 -----~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
.+..++..... ....+...++|||..|..++++... .++..++++++||+|++|+|+|+|+.+-
T Consensus 327 ~~~~~~~~~~~~~~~~----~~~~a~W~~~~~~~~r~~sr~~~~~--~~~~~~l~~tlpG~~~~y~g~e~g~~~~ 395 (545)
T KOG0471|consen 327 SIYKEVEVDWLSNHDT----ENRWAHWVLGNHDQARLASRFGSDS--VDLLNVLLLTLPGTPVTYYGEEIGMDDV 395 (545)
T ss_pred HHHHHHHHHHHhcCCc----cCCceeeeecCccchhhHHHhcchh--HHHHhHHhcccCCCceEEEeEEeeccce
Confidence 00011110000 0011234678888888888876333 6677788999999999999999999865
No 25
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.2e-44 Score=352.59 Aligned_cols=293 Identities=17% Similarity=0.225 Sum_probs=191.1
Q ss_pred ceEEEeee--cC-CCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 24 ALLFQGFN--WE-SSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 24 ~v~~q~F~--~~-~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
-+||+.-. |. ......+++++++++ |+|||+||||+||||||++++ ++|||++.+||+++ ++|||.+|||+||
T Consensus 247 ~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV 325 (730)
T PRK12568 247 LSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFV 325 (730)
T ss_pred cEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHH
Confidence 46777653 11 122235799999998 599999999999999999876 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~ 177 (358)
++||++||+||||+|+||++.+... +..|++...+...+.. .+ ....|..+ .+|+++|
T Consensus 326 ~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~~d~~--------------~g---~~~~W~~~-~~N~~~p 383 (730)
T PRK12568 326 DACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEHADPR--------------EG---MHRDWNTL-IYNYGRP 383 (730)
T ss_pred HHHHHCCCEEEEEeccccCCccccc----cccCCCccccccCCCc--------------CC---ccCCCCCe-ecccCCH
Confidence 9999999999999999999976321 1112221100000000 00 01112222 4899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeeccCCCCC------------------------HHHHHHH---HHhcCC-CeEEEecc
Q 018278 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSITKVY---MENTSP-DFAVGEKW 229 (358)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~---~~~~~p-~~~~gE~~ 229 (358)
+||++|++++++|++++||||||+||++++- .+||+++ +++.+| +++|||.+
T Consensus 384 eVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEes 463 (730)
T PRK12568 384 EVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEES 463 (730)
T ss_pred HHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 9999999999999999999999999987641 3588877 566778 89999986
Q ss_pred CCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccC
Q 018278 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (358)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~n 308 (358)
...+ . .......+.-+++..+++..+.-+...+.. ...+-........++.+.... ...+..|
T Consensus 464 t~~p-------~--------vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~~~e-~fvlp~S 527 (730)
T PRK12568 464 TAWP-------G--------VTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYAFSE-RFVLPLS 527 (730)
T ss_pred CCCc-------c--------ccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhhhhc-cEeccCC
Confidence 4311 0 000111111123333444443333333322 111111111100111111122 2357899
Q ss_pred CCC-----CcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 309 HDT-----GSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 309 HD~-----~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
||+ .++.....++. +.+|+++++|++.||.|+||+|+|+|...+.|.
T Consensus 528 HDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~ 583 (730)
T PRK12568 528 HDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNH 583 (730)
T ss_pred CcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccC
Confidence 999 33333333332 356889999999999999999999999987765
No 26
>PLN02960 alpha-amylase
Probab=100.00 E-value=9e-43 Score=345.23 Aligned_cols=190 Identities=17% Similarity=0.274 Sum_probs=141.2
Q ss_pred CCCCceEEEeeecCCCC-CCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHH
Q 018278 20 FTSPALLFQGFNWESSN-KAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 20 ~~~~~v~~q~F~~~~~~-~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
+....+||++....+.. .+.|+|++++++ |+|||+||||+||||||++.+ .+|||++++||+|+ ++|||++||++
T Consensus 392 ~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~ 470 (897)
T PLN02960 392 VPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKR 470 (897)
T ss_pred CCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHH
Confidence 34556899988632222 235899999976 999999999999999999876 46999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
||++||++||+||||+|+||++.++.... ..|.+ ... .|. ..+ .. .. ...| +.+.+|++
T Consensus 471 LVd~aH~~GI~VILDvV~NH~~~d~~~~L---~~FDG-~~~---~Yf----~~~------~~-g~--~~~W-G~~~fNy~ 529 (897)
T PLN02960 471 LVDEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-SND---CYF----HSG------KR-GH--HKRW-GTRMFKYG 529 (897)
T ss_pred HHHHHHHCCCEEEEEecccccCCccccch---hhcCC-Ccc---cee----ecC------CC-Cc--cCCC-CCcccCCC
Confidence 99999999999999999999998752110 11221 100 000 000 00 00 0111 22458999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------------------HHHHHHH---HHhcCC-CeEEE
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PSITKVY---MENTSP-DFAVG 226 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------------------~~~~~~~---~~~~~p-~~~~g 226 (358)
+++||++|++++++|+++|||||||+||+..|- ..|++.+ +++..| +++||
T Consensus 530 ~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 530 DHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 999999999999999999999999999997631 1355554 455566 89999
Q ss_pred eccCC
Q 018278 227 EKWDS 231 (358)
Q Consensus 227 E~~~~ 231 (358)
|..++
T Consensus 610 Edss~ 614 (897)
T PLN02960 610 EDATF 614 (897)
T ss_pred ECCCC
Confidence 98764
No 27
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.6e-43 Score=361.74 Aligned_cols=285 Identities=19% Similarity=0.182 Sum_probs=185.5
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
..+||++.. .+... +++|++++++ |+|||+||||+||||||++++ ++|||++++||+++ ++|||++|||+||++
T Consensus 747 p~~IYEvHv-gsf~~-~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~ 823 (1224)
T PRK14705 747 PMSVYEVHL-GSWRL-GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDS 823 (1224)
T ss_pred CcEEEEEEe-ccccc-CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHH
Confidence 358888775 44433 5789999988 699999999999999999876 57999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
||++||+||||+|+||++.+... ...|.+...+...+... + ....|. ...+|+++++|
T Consensus 824 ~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~d~~~--------------g---~~~~Wg-~~~fn~~~~eV 881 (1224)
T PRK14705 824 LHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHADPAL--------------G---EHPDWG-TLIFDFGRTEV 881 (1224)
T ss_pred HHHCCCEEEEEeccccCCcchhh----hhhcCCCcccccCCccc--------------C---CCCCCC-CceecCCCHHH
Confidence 99999999999999999765310 00122110000000000 0 011111 13489999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 180 QKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
|++|++++++|+++|||||||+|++++| ..+||+++ +++..| +++|||.+..
T Consensus 882 r~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~ 961 (1224)
T PRK14705 882 RNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTA 961 (1224)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 9999999999999999999999999876 24688887 445567 8999998865
Q ss_pred CCCC-------C-CCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCcee
Q 018278 232 LSYG-------P-DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV 303 (358)
Q Consensus 232 ~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 303 (358)
.+-. + +-+..||.+. +..+.+|+.. ....+-........++.+....+ +
T Consensus 962 ~p~vt~p~~~GGlGFd~kWnmgw-mhd~l~Y~~~---------------------dp~~r~~~~~~ltf~~~ya~~e~-f 1018 (1224)
T PRK14705 962 FPGVTAPTSHGGLGFGLKWNMGW-MHDSLKYASE---------------------DPINRKWHHGTITFSLVYAFTEN-F 1018 (1224)
T ss_pred CcCccccccCCCccCCcEecchh-hHHHHHHhhh---------------------CcchhhcccchHHHHHHHHhhcC-E
Confidence 2100 0 1122333211 2222223221 11100000000000001101111 3
Q ss_pred ecccCCCCCcC-----cCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 304 TFIDNHDTGST-----QRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 304 ~f~~nHD~~r~-----~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.+..|||+... ....+++ -..+++++++++++||+|+||||+|+|...++|.
T Consensus 1019 vl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~ 1079 (1224)
T PRK14705 1019 LLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSE 1079 (1224)
T ss_pred ecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccc
Confidence 35668997421 1111111 1256889999999999999999999999987763
No 28
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=326.98 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=188.2
Q ss_pred eEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 25 v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
|.+-+|.++ ..-|+++..+++|+|||+||||+|+||||.+.+. +|||+++-||++. ++|||++|||+||++||+
T Consensus 150 lHvGs~~~~---~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~-sryGtPedfk~fVD~aH~ 225 (628)
T COG0296 150 LHVGSFTPD---RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPT-SRYGTPEDFKALVDAAHQ 225 (628)
T ss_pred EEeeeccCC---CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccc-ccCCCHHHHHHHHHHHHH
Confidence 344445542 2248999999999999999999999999999884 7999999999999 999999999999999999
Q ss_pred cCCEEEEEeecccccccCCCCCccee-eccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 018278 103 KGIKCLADMVINHRTAERKDGRGIYC-IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (358)
Q Consensus 103 ~Gi~VilD~V~NH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~ 181 (358)
+||.||||+|+||.+.+.. +. .|.+...+...++. .+..+.|+.. -.|++.++||+
T Consensus 226 ~GIgViLD~V~~HF~~d~~-----~L~~fdg~~~~e~~~~~----~~~~~~Wg~~--------------i~~~gr~EVR~ 282 (628)
T COG0296 226 AGIGVILDWVPNHFPPDGN-----YLARFDGTFLYEHEDPR----RGEHTDWGTA--------------IFNYGRNEVRN 282 (628)
T ss_pred cCCEEEEEecCCcCCCCcc-----hhhhcCCccccccCCcc----cccCCCcccc--------------hhccCcHHHHH
Confidence 9999999999999998642 11 12221111111111 0111222211 14556999999
Q ss_pred HHHHHHHHHHHhcCCCeEeeccCCCCCH------------------------HHHHHH---HHhcCC-CeEEEeccCCCC
Q 018278 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAP------------------------SITKVY---MENTSP-DFAVGEKWDSLS 233 (358)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~------------------------~~~~~~---~~~~~p-~~~~gE~~~~~~ 233 (358)
+|++.+.+|+++|+|||||+|||..|.. +|+++. +....| .+.|+|.|+..+
T Consensus 283 Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~ 362 (628)
T COG0296 283 FLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDP 362 (628)
T ss_pred HHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCC
Confidence 9999999999999999999999988721 233332 344456 788999987522
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHH-HHHHHH--cC--chhhhhhcCCCCCCccCCCCCceeecccC
Q 018278 234 YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-ILQAAV--QG--ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (358)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~-~l~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~f~~n 308 (358)
. -.+...+++ ..|+|.... .+.+.+ .+ ...+.........++. ..++..+.+..|
T Consensus 363 ~--------------~t~~~~~gG-----~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~-y~~se~~~l~~s 422 (628)
T COG0296 363 H--------------VTLPVAIGG-----LGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLL-YAFSENVVLPLS 422 (628)
T ss_pred C--------------ceeeecccc-----cchhhhhhhhhHhhHHHhcccCccccccccCCCccccc-cccceeEecccc
Confidence 0 011111111 112222211 233322 11 1111111111111111 235667889999
Q ss_pred CCCC--cCcCCCC-------CCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCCC
Q 018278 309 HDTG--STQRLWP-------FPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNVL 356 (358)
Q Consensus 309 HD~~--r~~~~~~-------~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~~ 356 (358)
||+- -..++.. .....++.++++|++.||+|++|||+|+|...|+|.+
T Consensus 423 HDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~ 479 (628)
T COG0296 423 HDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFF 479 (628)
T ss_pred ccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCccc
Confidence 9985 2222211 1334678899999999999999999999999999865
No 29
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.7e-40 Score=317.87 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=191.2
Q ss_pred ceEEEeeecCCCCCCC-CchHHHHh--hhhhHHHcCCCEEEeCCCCCC---------CC-CCCCCccccCCCCCCCCCCH
Q 018278 24 ALLFQGFNWESSNKAG-GWYNSLKN--SIPDLSNAGITHVWLPPPSQS---------VA-PQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~-G~~~gl~~--~L~yl~~LGv~~I~l~Pi~~~---------~~-~~gY~~~d~~~id~~~~Gt~ 90 (358)
.|++.+++--...+.+ .=|..|.+ ..+||++|||++|||+|++++ +. +.||++.| +.|| |+|||+
T Consensus 52 ~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Id-p~~GT~ 129 (688)
T TIGR02455 52 SVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDID-PLLGSE 129 (688)
T ss_pred CeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccC-cccCCH
Confidence 5777777622222223 33444433 478999999999999999999 65 78999999 6999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCC--------CCCccee-----------eccCCCCC---------------
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK--------DGRGIYC-----------IFEGGTSD--------------- 136 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~--------~~~~~~~-----------~~~~~~~~--------------- 136 (358)
+||++|+++||++||+||+|+|+||||..|+ .++++|| .|.+..+.
T Consensus 130 eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~ 209 (688)
T TIGR02455 130 EELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELK 209 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHh
Confidence 9999999999999999999999999999986 2233444 55442211
Q ss_pred ------C---CCCCCCCcccCCCCccC--------CCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhcCC
Q 018278 137 ------D---RLDWGPSFICRGDKEYS--------DGQGNDDTGEDFQPAPDIDHLNPR--VQKELS-DWMNWLKTEIGF 196 (358)
Q Consensus 137 ------~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~dln~~n~~--v~~~l~-~~~~~w~~~~gv 196 (358)
. +.-|.........+.+. .....++.+.|+..+||||+.||. ||+.|+ +++++|++ .|+
T Consensus 210 ~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~ 288 (688)
T TIGR02455 210 AKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGA 288 (688)
T ss_pred hccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hcc
Confidence 0 00110011111123332 233456678889999999999999 999999 89999998 999
Q ss_pred CeEeeccCCCCC-------------HHH---HHHHHH--hcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh
Q 018278 197 DGWRFDFVKGYA-------------PSI---TKVYME--NTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257 (358)
Q Consensus 197 DGfR~D~a~~i~-------------~~~---~~~~~~--~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (358)
+|||+||+..+. ..+ .++++. ..++ .++++|.--. .+.+..|++
T Consensus 289 ~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~----------------~~d~~~~~g- 351 (688)
T TIGR02455 289 RGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT----------------IDDIAAMSH- 351 (688)
T ss_pred ccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC----------------HHHHHHHhC-
Confidence 999999987662 234 445555 4566 8899997543 688889998
Q ss_pred cCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceeecccCCCC
Q 018278 258 AGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (358)
Q Consensus 258 ~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~ 311 (358)
++.+..|||..+..+..++ .++..-++..+...... +-.+.+.++|+.|||+
T Consensus 352 -~~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~~-gid~~~~~~~LrNHDE 404 (688)
T TIGR02455 352 -GGADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHAF-GIDPASLIHALQNHDE 404 (688)
T ss_pred -CCcceeecccccHHHHHHHHcCCHHHHHHHHHhhhcC-CCCchhhhhhccCccc
Confidence 3788999999988888776 56655555444332221 2235677899999998
No 30
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=5.4e-40 Score=325.67 Aligned_cols=284 Identities=19% Similarity=0.270 Sum_probs=183.7
Q ss_pred CceEEEeeecCCCCC-CCCchHHHHh-hhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNK-AGGWYNSLKN-SIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~-~~G~~~gl~~-~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
..+||++..-.+..+ ..|+++++++ +|+|||+||||+||||||++.+ .+|||++.+||+++ ++|||.+|||+||+
T Consensus 229 ~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd 307 (758)
T PLN02447 229 ALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLID 307 (758)
T ss_pred CCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHH
Confidence 357888765222222 2589999865 5999999999999999999986 47999999999999 99999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 018278 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~ 178 (358)
+||++||+||||+|+||++.++... ...|++ ... .|... ....+ ...+ +...+|+++++
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~g---l~~fDg-~~~---~Yf~~-----------~~~g~--~~~w-~~~~~N~~~~e 366 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLDG---LNGFDG-TDG---SYFHS-----------GPRGY--HWLW-DSRLFNYGNWE 366 (758)
T ss_pred HHHHCCCEEEEEecccccccccccc---ccccCC-CCc---ccccc-----------CCCCC--cCcC-CCceecCCCHH
Confidence 9999999999999999999764311 111221 110 11100 00000 0011 12359999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeeccCCCCC--------------------------HHHHHHH---HHhcCC-CeEEEec
Q 018278 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYA--------------------------PSITKVY---MENTSP-DFAVGEK 228 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------------------------~~~~~~~---~~~~~p-~~~~gE~ 228 (358)
||++|++++++|+++|||||||+|++++|- ..|++.+ +++..| +++|||.
T Consensus 367 Vr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 367 VLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred HHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 999999999999999999999999999772 1245444 566677 8999999
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccch----HHHHHHHHcC---chhhhhhcCCCCCCccC-CCCC
Q 018278 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT----KGILQAAVQG---ELWRLKDSNGKPPGFIG-ILPQ 300 (358)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~----~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~ 300 (358)
+++.+ ..+ +..- .+++ .||+.+ ...+.+.+.. ..+.+..... .+.. ...+
T Consensus 447 ~s~~p-------~l~--------~p~~--~GGl--GFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E 504 (758)
T PLN02447 447 VSGMP-------TLC--------RPVQ--EGGV--GFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTE 504 (758)
T ss_pred CCCCC-------Ccc--------ccCC--CCcC--CcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccC
Confidence 86522 111 0000 1111 244433 2222222211 1111111110 1111 2456
Q ss_pred ceeecccCCCCCcCc--CC----C--------CC-Cc-----ch----HHHHHHHHHcCCCe-eeeecCccccCC
Q 018278 301 NAVTFIDNHDTGSTQ--RL----W--------PF-PS-----DK----VMLGYAYILTHPGT-PCIVISVTYPLF 350 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~--~~----~--------~~-~~-----~~----~~~a~a~l~~~pG~-P~IyyGdE~G~~ 350 (358)
+.|.|.+|||+.... ++ . .. .. .| -|+..++++++||. +++|+|+|+|..
T Consensus 505 ~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ 579 (758)
T PLN02447 505 KCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHP 579 (758)
T ss_pred ceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCc
Confidence 788999999995431 10 1 11 00 11 14455788999999 799999999985
No 31
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=5.3e-40 Score=331.88 Aligned_cols=298 Identities=17% Similarity=0.309 Sum_probs=190.1
Q ss_pred CCCCchHHHHhh-------hhhHHHcCCCEEEeCCCCCCC----------------------------------------
Q 018278 37 KAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV---------------------------------------- 69 (358)
Q Consensus 37 ~~~G~~~gl~~~-------L~yl~~LGv~~I~l~Pi~~~~---------------------------------------- 69 (358)
+..|+|.+++++ |+||++||||+|+|||+++..
T Consensus 273 ~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (898)
T TIGR02103 273 ELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQ 352 (898)
T ss_pred CcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcccccccccccccccccccc
Confidence 347999999886 666678899999999998641
Q ss_pred ------------------------CCCCCCccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 70 ------------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 70 ------------------------~~~gY~~~d~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
.+|||+|..|++++ .+|+| ..|||+||++||++||+||||+|+||++.
T Consensus 353 ~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPe-gSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~ 431 (898)
T TIGR02103 353 LKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPE-GSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNA 431 (898)
T ss_pred ccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcC-hhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccc
Confidence 15999999999999 99988 37999999999999999999999999998
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
.++.... .+..-.+. |..+. +..+..... ....+++.+||+||++|++++++|+++|||||
T Consensus 432 ~g~~~~s---~ld~~~P~----YY~r~---------~~~G~~~n~---~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDG 492 (898)
T TIGR02103 432 SGPNDRS---VLDKIVPG----YYHRL---------NEDGGVENS---TCCSNTATEHRMMAKLIVDSLVVWAKDYKVDG 492 (898)
T ss_pred cCccCcc---cccccCcH----hhEee---------CCCCCeecC---CCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 7642211 11111110 11000 000111111 11245799999999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHH---HHhcCC-CeEEEeccCCCCCCC------CCCCC---CCCCCchhhHHHHHHhcCCcee--
Q 018278 199 WRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDSLSYGP------DGKPD---ANQDGHRGALKDWVQAAGGAVA-- 263 (358)
Q Consensus 199 fR~D~a~~i~~~~~~~~---~~~~~p-~~~~gE~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 263 (358)
||||++++++.+||+++ +++.+| ++++||.|..+.... ....+ -.=+.|.+.+++-+.+.+....
T Consensus 493 FRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~ 572 (898)
T TIGR02103 493 FRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGD 572 (898)
T ss_pred EEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCcccccc
Confidence 99999999999999888 455677 889999997432110 00000 0001222333333332110000
Q ss_pred ------eeccc---------------------hHHHHHHHHcCchhhh--hhcC------------CCCCCccCCCCCce
Q 018278 264 ------AFDFT---------------------TKGILQAAVQGELWRL--KDSN------------GKPPGFIGILPQNA 302 (358)
Q Consensus 264 ------~~df~---------------------~~~~l~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~ 302 (358)
.|--. ..+.++..+.|++... .+.. +.+.+ ....|...
T Consensus 573 ~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~-ya~~P~e~ 651 (898)
T TIGR02103 573 ALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAG-YAADPTET 651 (898)
T ss_pred ccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccc-cccCHHHh
Confidence 00000 1123333344443211 1110 00011 11367889
Q ss_pred eecccCCCCCcCcCCC----C--CC-c---chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 303 VTFIDNHDTGSTQRLW----P--FP-S---DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 303 v~f~~nHD~~r~~~~~----~--~~-~---~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
|+||++||+..+-..+ . .. . ++.++|++++++..|||+|..|+|+..++..++
T Consensus 652 inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~ 714 (898)
T TIGR02103 652 INYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDR 714 (898)
T ss_pred eeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCC
Confidence 9999999996422211 1 11 1 234689999999999999999999988766544
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=318.43 Aligned_cols=298 Identities=21% Similarity=0.295 Sum_probs=201.6
Q ss_pred CCceEEEeeecCC-------CCCCCCchHHHHhh--hhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCC
Q 018278 22 SPALLFQGFNWES-------SNKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (358)
Q Consensus 22 ~~~v~~q~F~~~~-------~~~~~G~~~gl~~~--L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (358)
.+.|||.+=-.+. +...+|||.|+++. |+|||+||||+|+||||+... .+|||+|..||+
T Consensus 170 ~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFA 249 (697)
T COG1523 170 EDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFA 249 (697)
T ss_pred cceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccC
Confidence 4468887642222 23347999999999 999999999999999998632 489999999999
Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 82 LDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 82 id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++ ++|-+ ..|||.||+++|++||.||||||+|||+.... .+.-..|++-.+.++..-.+... ..-.
T Consensus 250 p~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~--~g~t~~f~~id~~~Yyr~~~dg~----~~N~ 322 (697)
T COG1523 250 PE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNE--LGPTLSFRGIDPNYYYRLDPDGY----YSNG 322 (697)
T ss_pred CC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccC--cCcccccccCCcCceEEECCCCC----eecC
Confidence 99 99865 45999999999999999999999999986421 11112344322222211111100 1112
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHH-----HHHHH--hcCC----Ce
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT-----KVYME--NTSP----DF 223 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~-----~~~~~--~~~p----~~ 223 (358)
.+|+|. ||.++|.||++|+|++++|++|++|||||||.+..+..+-. ..++. +..| .-
T Consensus 323 TGcGNt-----------ln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~k 391 (697)
T COG1523 323 TGCGNT-----------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVK 391 (697)
T ss_pred CccCcc-----------cccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCce
Confidence 355555 99999999999999999999999999999999998876544 11221 1222 23
Q ss_pred EEEeccCCC--CCCC------CCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCcc
Q 018278 224 AVGEKWDSL--SYGP------DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFI 295 (358)
Q Consensus 224 ~~gE~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (358)
++||-|+-+ .|+. .++.+|| +.+++.+++|+.++.+ ....+...+.|+. .+. ...
T Consensus 392 liAepwD~g~~gyqvG~Fpd~~~~aewn-g~~rD~vr~F~~G~~~--------~~~~~a~rl~gS~-d~~-------~~~ 454 (697)
T COG1523 392 LIAEPWDIGPGGYQVGNFPDSPRWAEWN-GRFRDDVRRFWRGDAG--------LVGEFAKRLAGSS-DLY-------KRN 454 (697)
T ss_pred eeecchhhcCCCcccccCCCccchhhhC-CcccccccceeeCCCc--------cHHHHHHHhhcCc-chh-------hcc
Confidence 899999654 3433 2344777 6678888888875443 2334444333332 111 112
Q ss_pred CCCCCceeecccCCCCCcCcCCC-----------------------------C---------CCcchHHHHHHHHHcCCC
Q 018278 296 GILPQNAVTFIDNHDTGSTQRLW-----------------------------P---------FPSDKVMLGYAYILTHPG 337 (358)
Q Consensus 296 ~~~~~~~v~f~~nHD~~r~~~~~-----------------------------~---------~~~~~~~~a~a~l~~~pG 337 (358)
+..|.++|+||.+||.-.+...+ + ......+..++.++...|
T Consensus 455 ~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG 534 (697)
T COG1523 455 GRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQG 534 (697)
T ss_pred CCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcC
Confidence 34688999999999982211100 0 011223456677788899
Q ss_pred eeeeecCccccCCCCCC
Q 018278 338 TPCIVISVTYPLFHPLN 354 (358)
Q Consensus 338 ~P~IyyGdE~G~~~~~n 354 (358)
+||+-.|||+|.++.+|
T Consensus 535 ~pml~~gDe~~rtq~gn 551 (697)
T COG1523 535 TPMLLAGDEFGRTQYGN 551 (697)
T ss_pred Ccccccccccccccccc
Confidence 99999999999976655
No 33
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=5.5e-38 Score=316.49 Aligned_cols=314 Identities=18% Similarity=0.251 Sum_probs=193.8
Q ss_pred CceEEEeeecCCC-------CCCCCchHHHHhh-------hhhHHHcCCCEEEeCCCCCCC-------------------
Q 018278 23 PALLFQGFNWESS-------NKAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV------------------- 69 (358)
Q Consensus 23 ~~v~~q~F~~~~~-------~~~~G~~~gl~~~-------L~yl~~LGv~~I~l~Pi~~~~------------------- 69 (358)
+.|||+.=-.|.. .+..|+|.+++++ |+||++||||+|+|||+++..
T Consensus 339 D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~ 418 (970)
T PLN02877 339 DISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEK 418 (970)
T ss_pred ccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcc
Confidence 4577776432221 2346999999876 666777799999999998741
Q ss_pred --------------------CCCCCCccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCCC
Q 018278 70 --------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122 (358)
Q Consensus 70 --------------------~~~gY~~~d~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~ 122 (358)
.+|||+|..|++++ .+|+| ..|||+||++||++||+||||+|+||++..++.
T Consensus 419 ~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPE-gSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~ 497 (970)
T PLN02877 419 LPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPK-GSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPF 497 (970)
T ss_pred ccccchhhhhcccccccCCCCCCCCCccccCCCC-cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCc
Confidence 46999999999999 99998 368999999999999999999999999875431
Q ss_pred CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeec
Q 018278 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D 202 (358)
... ..+++..+.++.... ..+..... ....+.+.+++.||++|++++++|+++|||||||||
T Consensus 498 ~~~--s~ld~~vP~YY~r~~-------------~~G~~~ns---~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFD 559 (970)
T PLN02877 498 DEN--SVLDKIVPGYYLRRN-------------SDGFIENS---TCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFD 559 (970)
T ss_pred chh--hcccCCCCCceEEEC-------------CCCCcccC---CccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 110 012211111110000 00000000 011236789999999999999999999999999999
Q ss_pred cCCCCCHHHHHHH---HHhc--------CC-CeEEEeccCCCCCCCCC---CC-C-----CCCCCchhhHHHHHHhcC--
Q 018278 203 FVKGYAPSITKVY---MENT--------SP-DFAVGEKWDSLSYGPDG---KP-D-----ANQDGHRGALKDWVQAAG-- 259 (358)
Q Consensus 203 ~a~~i~~~~~~~~---~~~~--------~p-~~~~gE~~~~~~~~~~~---~~-~-----~~~~~~~~~~~~~~~~~~-- 259 (358)
.+.+++.+.+.++ +++. .| ++++||.|.-++..... .. . -.-+.|.+.+++-+.+.+
T Consensus 560 lmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F 639 (970)
T PLN02877 560 LMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPF 639 (970)
T ss_pred ccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCC
Confidence 9999999977654 4443 24 88999999753211000 00 0 001223334444443211
Q ss_pred ------Cceee-ec------c-----------chHHHHHHHHcCchhhh--hhcCC------------CCCCccCCCCCc
Q 018278 260 ------GAVAA-FD------F-----------TTKGILQAAVQGELWRL--KDSNG------------KPPGFIGILPQN 301 (358)
Q Consensus 260 ------~~~~~-~d------f-----------~~~~~l~~~~~~~~~~~--~~~~~------------~~~~~~~~~~~~ 301 (358)
++... +. . .+...++..+.|++..+ .+..+ ..+......|.+
T Consensus 640 ~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q 719 (970)
T PLN02877 640 GHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTE 719 (970)
T ss_pred CCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHH
Confidence 11000 00 0 01233444444544221 11100 000011235789
Q ss_pred eeecccCCCCCcCcCCC----CC------CcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 302 AVTFIDNHDTGSTQRLW----PF------PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 302 ~v~f~~nHD~~r~~~~~----~~------~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.|+|+++||+..+-..+ .. ..++.++|++++++..|||+|..|+|+..++..++
T Consensus 720 ~InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~ 783 (970)
T PLN02877 720 TINYVSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDR 783 (970)
T ss_pred heeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCC
Confidence 99999999995432211 10 11345689999999999999999999988766554
No 34
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-34 Score=275.66 Aligned_cols=148 Identities=26% Similarity=0.419 Sum_probs=118.8
Q ss_pred CCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCHH------HHHHHHHHHHHcCCEEE
Q 018278 39 GGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA------DLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 39 ~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~~------d~~~Lv~~~H~~Gi~Vi 108 (358)
+| +++.++| |++||+||+|||+||||+|.. ..+||.|++||++- +||||.+ |||+||++||..||.|+
T Consensus 251 ~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 251 GG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVL 328 (757)
T ss_pred cc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEe
Confidence 45 9999999 999999999999999999994 36999999999999 9999999 99999999999999999
Q ss_pred EEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 109 ADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 109 lD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
||+|.||++.+.. ...+.|++..+..+.--.+++. . .-++.+. +|++.|+|+++|++.++
T Consensus 329 LDVV~sHaa~n~~---d~l~~fdGid~~~Yf~~~~r~~-----h-~~~~~r~-----------fn~~~~~V~rflL~nLr 388 (757)
T KOG0470|consen 329 LDVVHSHAAKNSK---DGLNMFDGIDNSVYFHSGPRGY-----H-NSWCSRL-----------FNYNHPVVLRFLLSNLR 388 (757)
T ss_pred hhhhhhhcccCcC---CcchhccCcCCceEEEeCCccc-----c-ccccccc-----------ccCCCHHHHHHHHHHHH
Confidence 9999999998433 2233455433222211111000 0 0122333 99999999999999999
Q ss_pred HHHHhcCCCeEeeccCCCCC
Q 018278 189 WLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~i~ 208 (358)
||++||+|||||||.+.+|-
T Consensus 389 ~WVtEY~vDGFRFD~~ssm~ 408 (757)
T KOG0470|consen 389 WWVTEYHVDGFRFDLVSSML 408 (757)
T ss_pred HHHHheeccceEEcchhhhh
Confidence 99999999999999998773
No 35
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=4.5e-31 Score=232.48 Aligned_cols=296 Identities=20% Similarity=0.357 Sum_probs=206.1
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhh-hHHHcCCCEEEeCCCCCCCC--------CCCCCccccCCCCCCCCCCHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~Gt~~ 91 (358)
..+..|+|.|+|. |.+|+...+ .|+--|+.+|+++|+.|+-- ...|+|.. |.++ +|-|.++
T Consensus 26 ~~R~tmVHLFEWK--------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~-tRSGNE~ 95 (504)
T KOG2212|consen 26 QGRTTIVHLFEWK--------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLC-TRSGNED 95 (504)
T ss_pred cCcceEEEEEEee--------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEee-ccCCCHH
Confidence 4558999999997 999998877 77889999999999998542 23799996 7899 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCCC-----Ccceeecc-----CCCCCCCCCCCCCcccCCC---CccCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDG-----RGIYCIFE-----GGTSDDRLDWGPSFICRGD---KEYSDGQG 158 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 158 (358)
+|+.||+.|.+.|+++++|+|+|||+....+. .+.+ .++ ++.|++..++++.....+- ..|+ ..
T Consensus 96 eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~-~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~N--da 172 (504)
T KOG2212|consen 96 EFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSY-FNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYN--DA 172 (504)
T ss_pred HHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCc-cCCCCCCCCCCCcccccCCCcccCCCcccccccc--ch
Confidence 99999999999999999999999998632100 0000 011 1233333333332111110 1111 12
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC-----------CCeEEEe
Q 018278 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-----------PDFAVGE 227 (358)
Q Consensus 159 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-----------p~~~~gE 227 (358)
..+..|...++.|||..+..||..|++.+.++++ .||-|||+||+|||.++-+..++...+ ..|++-|
T Consensus 173 ~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qE 251 (504)
T KOG2212|consen 173 TQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQE 251 (504)
T ss_pred hhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhh
Confidence 3456677889999999999999999999999998 999999999999999987777644311 1467777
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecc
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFI 306 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~ 306 (358)
+.+.+. .+. .-.+|.+ ...+.+|.+...+..++.+ +..+....++..-+.. ...++++|+
T Consensus 252 VID~Gg-----E~v--------~~~dY~g----~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~--~s~~~L~Fv 312 (504)
T KOG2212|consen 252 VIDLGG-----EPI--------KSSDYFG----NGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM--PSDRALVFV 312 (504)
T ss_pred hhhcCC-----cee--------ecccccC----CceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC--CCcceEEEe
Confidence 775411 000 0012322 3344566777778888754 3334344444333332 235789999
Q ss_pred cCCCCCcCcCC-----CCC-CcchHHHHHHHHHcCC-CeeeeecCccccC
Q 018278 307 DNHDTGSTQRL-----WPF-PSDKVMLGYAYILTHP-GTPCIVISVTYPL 349 (358)
Q Consensus 307 ~nHD~~r~~~~-----~~~-~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~ 349 (358)
+|||++|.... +.+ ..+++++|.+|||..| |+|.|...--+-.
T Consensus 313 DNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~ 362 (504)
T KOG2212|consen 313 DNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDV 362 (504)
T ss_pred ccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeec
Confidence 99999997654 222 4567899999999999 9999987744433
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.97 E-value=2.2e-30 Score=258.50 Aligned_cols=192 Identities=20% Similarity=0.246 Sum_probs=146.0
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
++||++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id-p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN-PELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6999999999999999999999999999874 57999999999999 99999999999999999999999999999999
Q ss_pred ccc---CCC-----------CCcceee--ccCCC------------CC----------------C--CCCCCCCcccCCC
Q 018278 117 TAE---RKD-----------GRGIYCI--FEGGT------------SD----------------D--RLDWGPSFICRGD 150 (358)
Q Consensus 117 ~~~---~~~-----------~~~~~~~--~~~~~------------~~----------------~--~~~~~~~~~~~~~ 150 (358)
|.+ |++ +..+|+. |.... ++ . ...++...+.-..
T Consensus 91 a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p 170 (825)
T TIGR02401 91 AVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAP 170 (825)
T ss_pred ccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCc
Confidence 987 221 1122321 11100 00 0 0001110000000
Q ss_pred C------------------------------ccC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 151 K------------------------------EYS--DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 151 ~------------------------------~~~--~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
. .|. +..-||........+++|+.++|+|.++..+.+..|+++.-|||
T Consensus 171 ~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdG 250 (825)
T TIGR02401 171 GTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDG 250 (825)
T ss_pred cchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCce
Confidence 0 111 22345555566788999999999999999999999999555999
Q ss_pred EeeccCCCC--CHHHHHHHHHhcCC-CeEEEe-ccCC
Q 018278 199 WRFDFVKGY--APSITKVYMENTSP-DFAVGE-KWDS 231 (358)
Q Consensus 199 fR~D~a~~i--~~~~~~~~~~~~~p-~~~~gE-~~~~ 231 (358)
+|+|++.++ |..+|+++.++..| .+++.| ++..
T Consensus 251 lRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 251 LRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 999999999 78899999887776 888888 5544
No 37
>smart00642 Aamy Alpha-amylase domain.
Probab=99.96 E-value=4.1e-29 Score=208.73 Aligned_cols=93 Identities=28% Similarity=0.554 Sum_probs=88.3
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
+|+++.|. +++++++|||++|+++|+||++|||++|||+|+++++ .++||++.||++++ |+|||++||++||++
T Consensus 1 qi~~~~F~-~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~-~~~Gt~~d~~~lv~~ 78 (166)
T smart00642 1 QIYPDRFA-DGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID-PRFGTMEDFKELVDA 78 (166)
T ss_pred Ceeecccc-CCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC-cccCCHHHHHHHHHH
Confidence 58899999 5677779999999999999999999999999999988 68999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccc
Q 018278 100 FRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~ 118 (358)
||++||+||+|+|+||++.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999974
No 38
>PLN03244 alpha-amylase; Provisional
Probab=99.96 E-value=2.8e-28 Score=238.23 Aligned_cols=135 Identities=20% Similarity=0.320 Sum_probs=96.1
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 75 ~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++++||+++ ++|||++|||+||++||++||+||||+|+||++.+....- ..|.+ .+. .|... +
T Consensus 426 ~vt~fFAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL---~~fDG-t~~---~Yf~~----~----- 488 (872)
T PLN03244 426 KVTNFFAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-SND---CYFHT----G----- 488 (872)
T ss_pred ccCcccccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccch---hhcCC-Ccc---ceecc----C-----
Confidence 488999999 9999999999999999999999999999999997642110 11221 110 01000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------------------H
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------P 209 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------------------~ 209 (358)
..+ .. ..| +...+|+++++|+++|++++++|+++|||||||+|++..|- .
T Consensus 489 -~~g-~~--~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv 563 (872)
T PLN03244 489 -KRG-HH--KHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDAL 563 (872)
T ss_pred -CCC-cc--CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHH
Confidence 000 00 011 11348999999999999999999999999999999994432 1
Q ss_pred HHHH---HHHHhcCC-CeEEEeccCC
Q 018278 210 SITK---VYMENTSP-DFAVGEKWDS 231 (358)
Q Consensus 210 ~~~~---~~~~~~~p-~~~~gE~~~~ 231 (358)
.|++ +.+++..| +++|||..++
T Consensus 564 ~fL~laN~~ih~~~P~~itIAEDsS~ 589 (872)
T PLN03244 564 MYLILANEILHALHPKIITIAEDATY 589 (872)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 2333 33666778 8899998865
No 39
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.92 E-value=2.3e-24 Score=216.38 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=138.5
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id-p~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN-PELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 5899999999999999999999999999875 68999999999999 99999999999999999999999999999999
Q ss_pred cccCC--------------CCCccee--eccC----------CCCCCC------------------C-CCCCCcccCCC-
Q 018278 117 TAERK--------------DGRGIYC--IFEG----------GTSDDR------------------L-DWGPSFICRGD- 150 (358)
Q Consensus 117 ~~~~~--------------~~~~~~~--~~~~----------~~~~~~------------------~-~~~~~~~~~~~- 150 (358)
|.+++ .+..+|+ .|.+ |.++.. . -|...+.-...
T Consensus 95 ~~~~~~n~ww~dvl~~g~~S~y~~~Fdidw~~~~g~~llP~LG~~y~~~l~~g~l~l~~~~~g~~~~~y~d~~fPl~p~t 174 (879)
T PRK14511 95 AVGGPDNPWWWDVLEWGRSSPYADFFDIDWDSGEGKVLLPVLGDQYGEVLAAGELRLAFDDDGAFVLRYYDHRFPIAPGT 174 (879)
T ss_pred cCcCccCHHHHHHHHhCCCCCccCceeeeecCCCCceecCccCCcccchhhCCceEEeecCCCceEEEEcCccCCCCCCc
Confidence 98763 1122333 1211 000000 0 00000000000
Q ss_pred ------------------------------------------------------------------------CccC--CC
Q 018278 151 ------------------------------------------------------------------------KEYS--DG 156 (358)
Q Consensus 151 ------------------------------------------------------------------------~~~~--~~ 156 (358)
..|. +.
T Consensus 175 ~~~il~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~n~~~~~~~~~L~~ll~~Q~YRLa~Wr~a~~ 254 (879)
T PRK14511 175 YALILRHRLDLEALAAEFPALGELESILTAAQHLASPAVRAFIEQALAAFDGRKGDGRSRLDRLLERQHYRLASWRVADD 254 (879)
T ss_pred hhhhhhcchhHHHHHHHHhhhhcccchhhHHHhhcChHHHHHHHHHHHHhcCCCCchhhhHHHHHHhcceeccchhccCc
Confidence 0010 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC--CHHHHHHHHHhc-CCCeEEEeccC
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENT-SPDFAVGEKWD 230 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~-~p~~~~gE~~~ 230 (358)
.-||........++-+.-++|+|.+..-..+..|+++=-|||+|+|++..+ |...++.+-+.. .|.+++.|-+-
T Consensus 255 eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~~~~~~yivvEKIL 331 (879)
T PRK14511 255 EINYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRRTGRGAYIVVEKIL 331 (879)
T ss_pred ccCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhccCCCCeEEEEecc
Confidence 223333444467778888999999999999999999778999999999998 445777764443 35777777653
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.88 E-value=8.4e-22 Score=209.10 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=76.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-p~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-PEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6899999999999999999999999999964 68999999999999 99999999999999999999999999999999
Q ss_pred cc
Q 018278 117 TA 118 (358)
Q Consensus 117 ~~ 118 (358)
|.
T Consensus 833 ~~ 834 (1693)
T PRK14507 833 GV 834 (1693)
T ss_pred CC
Confidence 95
No 41
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=6.9e-19 Score=169.77 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=76.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+=||....+.||||++|||.++|++||+.+. +.|||+|+|...|+ |.+|+.+.|.+||+++|++||.+|+|+|+|||
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~In-PeLGG~egl~rLvaalk~~GlGlI~DIVPNHM 93 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEIN-PELGGEEGLERLVAALKSRGLGLIVDIVPNHM 93 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccC-hhhcChHHHHHHHHHHHhcCCceEEEecccch
Confidence 3469999999999999999999999999875 58999999999999 99999999999999999999999999999999
Q ss_pred ccc
Q 018278 117 TAE 119 (358)
Q Consensus 117 ~~~ 119 (358)
+..
T Consensus 94 av~ 96 (889)
T COG3280 94 AVG 96 (889)
T ss_pred hcc
Confidence 987
No 42
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.79 E-value=8.7e-18 Score=173.94 Aligned_cols=82 Identities=13% Similarity=0.280 Sum_probs=77.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCC-CCCCCCCCccccCCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEEee
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQK-GIKCLADMV 112 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~G----t~~d~~~Lv~~~H~~-Gi~VilD~V 112 (358)
.|+|.+..++|++|++||+|.||++||++ +.+.+.|++.||+.|| |.|| +.+||++||+++|++ ||++|+|+|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id-P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN-QHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC-hhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 59999999999999999999999999995 5578999999999999 9994 899999999999997 999999999
Q ss_pred cccccccCC
Q 018278 113 INHRTAERK 121 (358)
Q Consensus 113 ~NH~~~~~~ 121 (358)
+||||.+|+
T Consensus 207 ~NHTa~ds~ 215 (1464)
T TIGR01531 207 FNHTANNSP 215 (1464)
T ss_pred ecccccCCH
Confidence 999999874
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.38 E-value=3.1e-11 Score=115.58 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=104.5
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHH---------------cCCCEEEeCCCCCCC----------------
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSN---------------AGITHVWLPPPSQSV---------------- 69 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~---------------LGv~~I~l~Pi~~~~---------------- 69 (358)
....-|+|+=.-... ..|+|.||++--..|.+ .|+++|+|+||=+..
T Consensus 176 ~~P~nILQiHv~TAs--p~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 176 PAPRNILQIHVGTAS--PEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CCCceeEEEecCCCC--CCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 445678887642222 26999999876555532 699999999984411
Q ss_pred -----------------------------CCCCCCcc--ccCCCCCCCCCC--HHHHHHHHHHHHH---cCCEEEEEeec
Q 018278 70 -----------------------------APQGYMPG--RLYDLDASKYGS--QADLKSLIQAFRQ---KGIKCLADMVI 113 (358)
Q Consensus 70 -----------------------------~~~gY~~~--d~~~id~~~~Gt--~~d~~~Lv~~~H~---~Gi~VilD~V~ 113 (358)
.+|||++. -.-+++|.-++| ++|+-++|+++|. ..|+||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 24788753 334555334455 8999999999998 67999999999
Q ss_pred ccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.|.-+....- .. ..+..+ ...|+ -|||+.||.||..+.+.-+.=++
T Consensus 334 GHADNQ~~~L------Ln-----------~~flkG-PnMYG---------------Qdlnhq~P~VRAILLEmQRRK~n- 379 (811)
T PF14872_consen 334 GHADNQALDL------LN-----------RRFLKG-PNMYG---------------QDLNHQNPVVRAILLEMQRRKIN- 379 (811)
T ss_pred ccccchhhHh------hh-----------hhhccC-Ccccc---------------ccccccChHHHHHHHHHHHhhcc-
Confidence 9986653210 00 001111 01111 13999999999999999998887
Q ss_pred cCCCeEeeccCCCC
Q 018278 194 IGFDGWRFDFVKGY 207 (358)
Q Consensus 194 ~gvDGfR~D~a~~i 207 (358)
+|+||+|+|.+..+
T Consensus 380 ~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 380 TGADGIRVDGGQDF 393 (811)
T ss_pred cCCceeEecccccc
Confidence 99999999999765
No 44
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.99 E-value=1.1e-09 Score=102.85 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCC------HHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGS------QADLK 94 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt------~~d~~ 94 (358)
.+++-+|+.. ..--|.+....++|..++++|+|.|+++|+++-. +...|++.|...+| |.+.. .++++
T Consensus 5 ld~i~iQTvl----sk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~-~~~~~~~~~~~~~~v~ 79 (423)
T PF14701_consen 5 LDSISIQTVL----SKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFD-PDFFPPGKESTFEDVK 79 (423)
T ss_pred CcceEEEEEh----hhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcC-hhhcCCCccccHHHHH
Confidence 3456666553 1114889999999999999999999999999864 46789999999999 87754 47999
Q ss_pred HHHHHHH-HcCCEEEEEeecccccccCC
Q 018278 95 SLIQAFR-QKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 95 ~Lv~~~H-~~Gi~VilD~V~NH~~~~~~ 121 (358)
++|++++ +.||.+|.|+|+|||+.+++
T Consensus 80 ~~v~~~~~~~~ll~~~DvV~NHtA~nS~ 107 (423)
T PF14701_consen 80 EFVKEAEKKYGLLSMTDVVLNHTANNSP 107 (423)
T ss_pred HHHHHHHHHcCceEEEEEeeccCcCCCh
Confidence 9999995 79999999999999999876
No 45
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.87 E-value=1.2e-08 Score=98.87 Aligned_cols=170 Identities=22% Similarity=0.314 Sum_probs=103.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEeeccCCCCCHHHHHHH---HHh----------cCC
Q 018278 164 EDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVY---MEN----------TSP 221 (358)
Q Consensus 164 ~~~~~~~dln~~n~~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~---~~~----------~~p 221 (358)
..+.--.|+|-+||.|+.+.+.|+.|+++ +..+||||+||+.+++.+.+... .++ ...
T Consensus 138 yEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~ 217 (809)
T PF02324_consen 138 YEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANK 217 (809)
T ss_dssp -S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCT
T ss_pred ceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhh
Confidence 34555668999999999999999999998 56699999999999998876443 222 123
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC------chhhhhhcC-C-CCCC
Q 018278 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDSN-G-KPPG 293 (358)
Q Consensus 222 ~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~------~~~~~~~~~-~-~~~~ 293 (358)
-+.|=|.|+.. -..|+...+.....+|+.++..+..++.. .+..+.... . +...
T Consensus 218 HlSilE~ws~n------------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d 279 (809)
T PF02324_consen 218 HLSILEAWSSN------------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSND 279 (809)
T ss_dssp C--EESSSTTT------------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE
T ss_pred hheeeeccccC------------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccC
Confidence 57788999641 12677777777778999998888887733 233333211 1 1111
Q ss_pred ccCCCCCceeecccCCCCCc-----------Cc---CCC-----------------------CCCcchHHHHHHHHHcC-
Q 018278 294 FIGILPQNAVTFIDNHDTGS-----------TQ---RLW-----------------------PFPSDKVMLGYAYILTH- 335 (358)
Q Consensus 294 ~~~~~~~~~v~f~~nHD~~r-----------~~---~~~-----------------------~~~~~~~~~a~a~l~~~- 335 (358)
..........+||.+||..- +. .-+ .+..-.+..|+|+||+-
T Consensus 280 ~~en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNK 359 (809)
T PF02324_consen 280 STENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNK 359 (809)
T ss_dssp --SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-S
T ss_pred CcCCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCC
Confidence 11112234568999999831 00 000 01222456799999996
Q ss_pred CCeeeeecCccccCCC
Q 018278 336 PGTPCIVISVTYPLFH 351 (358)
Q Consensus 336 pG~P~IyyGdE~G~~~ 351 (358)
..+|.|||||.|-..+
T Consensus 360 DTVPRVYYGDLYtDdG 375 (809)
T PF02324_consen 360 DTVPRVYYGDLYTDDG 375 (809)
T ss_dssp SSEEEEEHHHHBESSS
T ss_pred CCCceEEecccccccc
Confidence 6999999999885443
No 46
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.84 E-value=2.1e-08 Score=92.52 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=82.6
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+-+.+.+.|+.|+++|+|+|.+-=-..... ..-+.+..-+... ...+ +.|=|+.+|++||++||+|..=+.+...
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g-~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~ 95 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTG-KQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFN 95 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCC-CCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecC
Confidence 467888999999999999999753211110 0112221111111 1222 3678999999999999999998855543
Q ss_pred cccCCC---CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 117 TAERKD---GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 117 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
+..... ....|..- ...+|.. .+.+. .....-||-.+|+||+++++.++..++.
T Consensus 96 ~~~~~~~~~~~p~~~~~------~~~~~~~--------~~~~~---------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~ 152 (311)
T PF02638_consen 96 APDVSHILKKHPEWFAV------NHPGWVR--------TYEDA---------NGGYYWLNPGHPEVRDYIIDIVKEIVKN 152 (311)
T ss_pred CCchhhhhhcCchhhee------cCCCcee--------ecccC---------CCCceEECCCCHHHHHHHHHHHHHHHhc
Confidence 321100 00001000 0001100 00000 0111129999999999999999999999
Q ss_pred cCCCeEeecc
Q 018278 194 IGFDGWRFDF 203 (358)
Q Consensus 194 ~gvDGfR~D~ 203 (358)
|.|||+.+|-
T Consensus 153 YdvDGIhlDd 162 (311)
T PF02638_consen 153 YDVDGIHLDD 162 (311)
T ss_pred CCCCeEEecc
Confidence 9999999994
No 47
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.83 E-value=6.9e-09 Score=100.63 Aligned_cols=96 Identities=26% Similarity=0.407 Sum_probs=63.7
Q ss_pred CCceEEEeeecCC---CC-CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---------CCCCCccccCCCC---CC
Q 018278 22 SPALLFQGFNWES---SN-KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLD---AS 85 (358)
Q Consensus 22 ~~~v~~q~F~~~~---~~-~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id---~~ 85 (358)
..+|||+.|- .. +. +..=+-.-|++..+-+|++|||..||.|-+.+.. ..||+-+|-|++. +.
T Consensus 563 DSqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~pt 641 (809)
T PF02324_consen 563 DSQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPT 641 (809)
T ss_dssp HT-EEEE----TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-B
T ss_pred hcchhhcccc-ccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCC
Confidence 3489999993 11 10 1123457788899999999999999999998753 3699999999998 79
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+|||.+||+..|+++|+.||+||.|+|++.+-.
T Consensus 642 KYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 642 KYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp TTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 999999999999999999999999999998743
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.61 E-value=5.1e-07 Score=72.22 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=79.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
.+-+++||++|+++|-+.- .+-+..-|-|+...... |.++ .+-|+++|++||++||+|+.=+-++ .-..-.....
T Consensus 3 ~~~~~~lk~~~v~si~i~a--~~h~g~ayYPt~~~~~h-p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA--KCHGGYAYYPTKVGPRH-PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc--ccccEEEEccCCCCcCC-CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCC
Confidence 3557899999999999752 11112335566666667 8888 8889999999999999998766655 2111111122
Q ss_pred ceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeecc
Q 018278 126 IYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (358)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (358)
+|..-.. |.+.....+ ...+...+..+++. ++++++.++..+++|.+|||=+|.
T Consensus 78 eW~~~~~~G~~~~~~~~-----------------------~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERF-----------------------GYPGWYTCCLNSPY-REFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ceeeECCCCCCcCCCCc-----------------------CCCCceecCCCccH-HHHHHHHHHHHHHcCCCCEEEecC
Confidence 3443221 111000000 00001113344454 489999999999999999998873
No 49
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.47 E-value=3.9e-05 Score=75.12 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=43.2
Q ss_pred CCceEEEeeecCCCCCCCCchH-HHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYN-SLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDL 82 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~-gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~i 82 (358)
..+|++|+|-- ...-|.|||- ++.+-++.+++.|++.|+|+|+.+.. +...|++.+-++.
T Consensus 6 ~~Gv~~~l~SL-~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~al 67 (497)
T PRK14508 6 KSGILLHITSL-PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAG 67 (497)
T ss_pred ceEEEeccccC-CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCccccccc
Confidence 34788999865 2223579995 99999999999999999999998753 1234554443333
No 50
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=3e-06 Score=79.73 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=86.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC----------CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----------GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~----------gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+=..+.+.|+.|+.||||+|+..= ...++- ++.+. ...++ +.-|=|..+|++||++||+|+.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV--~~~G~~lypS~~~p~s~~~~~-~~~~~----~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQV--WNDGDALYPSAVLPWSDGLPG-VLGVD----PGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEE--ecCccccccccccccccCcCc-ccCCC----CCCChHHHHHHHHHhcCCeeee
Confidence 4446788889999999999999542 221211 11111 01122 3457789999999999999999
Q ss_pred EeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 110 DMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 110 D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
-+-+--++...+... .... .|... .+..+.+....+. ....=||-..|+||++|.+.+..
T Consensus 134 Wf~~~~~a~~~s~~~----~~~p-------~~~~~--~~~~~~~~~~~~~-------~~~~~ldPg~Pevq~~i~~lv~e 193 (418)
T COG1649 134 WFNPYRMAPPTSPLT----KRHP-------HWLTT--KRPGWVYVRHQGW-------GKRVWLDPGIPEVQDFITSLVVE 193 (418)
T ss_pred chhhcccCCCCChhH----hhCC-------CCccc--CCCCeEEEecCCc-------eeeeEeCCCChHHHHHHHHHHHH
Confidence 988777776542111 0000 01000 0000000000000 01112899999999999999999
Q ss_pred HHHhcCCCeEeeccCCCC
Q 018278 190 LKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 190 w~~~~gvDGfR~D~a~~i 207 (358)
.+..|.|||+.||---..
T Consensus 194 vV~~YdvDGIQfDd~fy~ 211 (418)
T COG1649 194 VVRNYDVDGIQFDDYFYY 211 (418)
T ss_pred HHhCCCCCceecceeecc
Confidence 999999999999986543
No 51
>PLN02635 disproportionating enzyme
Probab=98.27 E-value=0.00019 Score=70.55 Aligned_cols=57 Identities=11% Similarity=-0.000 Sum_probs=42.5
Q ss_pred CceEEEeeecCCCCCCCCchHHHH-hhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCccccC
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLY 80 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~-~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~~d~~ 80 (358)
..|++|.|--.++ -|.|||-... +.++.+++.|.+.++|+|+.+.. +...|++.+-+
T Consensus 30 ~Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~f 92 (538)
T PLN02635 30 AGILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDAN 92 (538)
T ss_pred eEEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccccc
Confidence 3799999965543 3469998765 78999999999999999998762 24455555433
No 52
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=98.07 E-value=4.8e-05 Score=70.44 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=89.7
Q ss_pred CchHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+-+.+.+.++.+++.| ++.|||=.=+.. +|...| +..|+.+|-+ .++||+++|++|++|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 35677888899999999 777887654432 222233 4566357764 589999999999999999876 565
Q ss_pred ccCCCC----CcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 018278 118 AERKDG----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 192 (358)
Q Consensus 118 ~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~ 192 (358)
.+++.. ...|++... +.......|. ....-+|+.||++++...+.++.+++
T Consensus 92 ~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~------------------------g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 92 QKSPLFKEAAEKGYLVKKPDGSVWQWDLWQ------------------------PGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred CCchhHHHHHHCCeEEECCCCCeeeecccC------------------------CCcccccCCCHHHHHHHHHHHHHHHH
Confidence 544311 112222111 0000000000 11122899999999999999999988
Q ss_pred hcCCCeEeeccCCCCCHH
Q 018278 193 EIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 193 ~~gvDGfR~D~a~~i~~~ 210 (358)
.|||||-+|....+|.+
T Consensus 148 -~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 148 -MGVDCFKTDFGERIPTD 164 (308)
T ss_pred -hCCcEEecCCCCCCCcc
Confidence 99999999988766543
No 53
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=98.03 E-value=0.00026 Score=76.52 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=39.4
Q ss_pred CceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC
Q 018278 23 PALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS 68 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~ 68 (358)
-.|++|.|--.+.++ |.|||.++.+.++.+++.|.+.|.|+|+.+.
T Consensus 725 ~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~ 771 (1221)
T PRK14510 725 CGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPL 771 (1221)
T ss_pred eEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 378999997666444 4699999999999999999999999998863
No 54
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=8.8e-06 Score=81.56 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEE
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYG------SQADLKSLIQAFRQ-KGIKCLAD 110 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~G------t~~d~~~Lv~~~H~-~Gi~VilD 110 (358)
-|.|.....+|.-.|+.|+|.|+++|+++-. +..-|+..|-..++ +.+- +.+|.++||+.||+ -||--|-|
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~-~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELN-PDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcC-hhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 4788888999999999999999999999854 45679999999999 8776 79999999999987 79999999
Q ss_pred eecccccccCC
Q 018278 111 MVINHRTAERK 121 (358)
Q Consensus 111 ~V~NH~~~~~~ 121 (358)
+|+||++.+++
T Consensus 217 vV~NHtAnns~ 227 (1521)
T KOG3625|consen 217 VVYNHTANNSK 227 (1521)
T ss_pred hhhhccccCCc
Confidence 99999999874
No 55
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.90 E-value=4.7e-05 Score=74.95 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCCch-HHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCC
Q 018278 38 AGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLD 83 (358)
Q Consensus 38 ~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id 83 (358)
|.||| .++.+-++.+++.|++.+.|.|+.+... ...|.+.+-+++|
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alN 61 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALN 61 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCC
Confidence 57999 9999999999999999999999997642 3378888877777
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.89 E-value=0.00024 Score=65.62 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=84.1
Q ss_pred CchHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
-+-+.|.+.++.++++| ++.|+|=.-+.. .. .| +..|+.+|-+ .++||+++|++|+|+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~--~~----g~-f~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET--CY----GD-FDFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc--cC----Cc-cccChhhCCC---HHHHHHHHHHCCCeEEEEECC-eeC
Confidence 34678888888999988 567777532321 11 13 4455246754 789999999999999998887 454
Q ss_pred ccCCC----CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 118 AERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 118 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.+++. ....|++-......+. . ..+.. ....-+|+.||++++...+.++.++.+
T Consensus 96 ~~s~~~~e~~~~g~~vk~~~g~~~~---~--------~~~w~-----------g~~~~~Dftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 96 TDSENFREAVEKGYLVSEPSGDIPA---L--------TRWWN-----------GTAAVLDFTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred CCCHHHHhhhhCCeEEECCCCCCCc---c--------cceec-----------CCcceEeCCCHHHHHHHHHHHHHHHHH
Confidence 44321 0112222111000000 0 00000 011228999999999999999999966
Q ss_pred cCCCeEeeccCCC
Q 018278 194 IGFDGWRFDFVKG 206 (358)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (358)
.|||||-+|....
T Consensus 154 ~Gvdg~w~D~~E~ 166 (303)
T cd06592 154 YGIDSFKFDAGEA 166 (303)
T ss_pred hCCcEEEeCCCCc
Confidence 9999999999764
No 57
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.83 E-value=0.0003 Score=66.83 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=81.7
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCC-CCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPS-QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~-~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-+.|.+.++.++++|++.+.|===+ .....+--..-|+ .+|+.+|- +-++.|++.+|++||+.-|=+-+--++.++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4667777888999999988873222 1111110011232 23435664 359999999999999999999887776665
Q ss_pred CC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 121 KD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 121 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
+- ...+|....++.. . . ....+--||+++|+|++++.+.+..++++.|||.
T Consensus 134 ~l~~~hPdw~l~~~~~~----------------~-~----------~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidY 186 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRP----------------P-T----------LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDY 186 (394)
T ss_dssp CHCCSSBGGBTCCTTSE------------------E----------CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHhCccceeecCCCC----------------C-c----------CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 41 1112221111000 0 0 0001112999999999999999999888899999
Q ss_pred EeeccCCCC
Q 018278 199 WRFDFVKGY 207 (358)
Q Consensus 199 fR~D~a~~i 207 (358)
|.+|.-..+
T Consensus 187 iK~D~n~~~ 195 (394)
T PF02065_consen 187 IKWDFNRDI 195 (394)
T ss_dssp EEEE-TS-T
T ss_pred EEeccccCC
Confidence 999997665
No 58
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=97.51 E-value=2.5e-05 Score=79.82 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=41.3
Q ss_pred eecccCCCCCcCcCCCCCC--------cchHHHHHHHHHcCCCeeeeecCcccc---CCCCCCCC
Q 018278 303 VTFIDNHDTGSTQRLWPFP--------SDKVMLGYAYILTHPGTPCIVISVTYP---LFHPLNVL 356 (358)
Q Consensus 303 v~f~~nHD~~r~~~~~~~~--------~~~~~~a~a~l~~~pG~P~IyyGdE~G---~~~~~n~~ 356 (358)
.+.+++||+.|+.+.+... ..+.+.+.++.||+||+|+||||+|++ ..+|.|+-
T Consensus 617 ~~lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~slvDPDNRR 681 (825)
T TIGR02401 617 DAVLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSLVDPDNRR 681 (825)
T ss_pred HHHcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCccC
Confidence 3468999998876655422 345677889999999999999999976 55777763
No 59
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.49 E-value=0.0006 Score=63.35 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=76.4
Q ss_pred HHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 43 NSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
+.+.+.++.+++.|| ++|||-+=+... .+-.-.+ +..|+.+|- +.++||+++|++|+||++-+.+- ++.++
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~~ 101 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQDH 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCCC
Confidence 567777888888775 788876432221 0100111 444524554 46799999999999999966544 33333
Q ss_pred CC----CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 121 KD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 121 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
+. ....|++-..... .+..+..+. .-.-+|+.||++++...+.++..+.+.|
T Consensus 102 ~~y~e~~~~g~~v~~~~g~-----------------------~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 158 (317)
T cd06599 102 PRYKELKEAGAFIKPPDGR-----------------------EPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG 158 (317)
T ss_pred HHHHHHHHCCcEEEcCCCC-----------------------CcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC
Confidence 20 0111221110000 000000000 0112899999999999999965544599
Q ss_pred CCeEeeccCC
Q 018278 196 FDGWRFDFVK 205 (358)
Q Consensus 196 vDGfR~D~a~ 205 (358)
||||=+|...
T Consensus 159 vdg~w~D~~E 168 (317)
T cd06599 159 IDSTWNDNNE 168 (317)
T ss_pred CcEEEecCCC
Confidence 9999999864
No 60
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.49 E-value=0.00029 Score=66.03 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=78.6
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCC-----CCCCCccc---cCCCCCCCCC---CHHHHHHHHHHHHHcCCEE
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVA-----PQGYMPGR---LYDLDASKYG---SQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~-----~~gY~~~d---~~~id~~~~G---t~~d~~~Lv~~~H~~Gi~V 107 (358)
+-+.+.+.++.+++.|| ++|+|=+-..... +..|...| .+..++-+|- .-.+.++||+++|++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 46778888888888775 7888864221100 11121100 0011101110 1125799999999999999
Q ss_pred EEEeeccccccc-CCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHH
Q 018278 108 LADMVINHRTAE-RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT--GEDFQPAPDIDHLNPRVQKELS 184 (358)
Q Consensus 108 ilD~V~NH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dln~~n~~v~~~l~ 184 (358)
++-+.+. +..+ ++. ...+..+..+.... .... +..+.... ........-+|+.||++++...
T Consensus 102 ~l~v~P~-i~~~~~~~-~~~~~~~~~~~~~g-------~~vk------~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~ 166 (340)
T cd06597 102 LLWQIPI-IKLRPHPH-GQADNDEDYAVAQN-------YLVQ------RGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWM 166 (340)
T ss_pred EEEecCc-cccccccc-cccchhHHHHHHCC-------EEEE------cCCCCccccccccCCCceeecCCCHHHHHHHH
Confidence 9865552 2211 110 00000010000000 0000 00000000 0011112239999999999999
Q ss_pred HHHHHHHHhcCCCeEeeccCCC
Q 018278 185 DWMNWLKTEIGFDGWRFDFVKG 206 (358)
Q Consensus 185 ~~~~~w~~~~gvDGfR~D~a~~ 206 (358)
+.++.+++++|||||-+|+...
T Consensus 167 ~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 167 EKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHhcCCcEEEecCCCc
Confidence 9999999779999999998754
No 61
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.47 E-value=0.00096 Score=61.24 Aligned_cols=135 Identities=18% Similarity=0.248 Sum_probs=84.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC----CHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G----t~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
|+=+.+.+.|+.+++-|+|+|.|- -.+++|.-..+.-.......| ...|+++|+++||++||++|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 455667788999999999999874 234455322221111101222 25789999999999999999999862
Q ss_pred ccccCCCCCcceeeccCCCCC-CCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 116 RTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
++.... ...+|.- ...+...|.+..+ ..=+|--+++||+|+++.++..++ .
T Consensus 85 ---------------kD~~la~~~pe~av--~~~~G~~w~d~~~----------~~WvnP~~~evw~Y~i~IA~Eaa~-~ 136 (316)
T PF13200_consen 85 ---------------KDPVLAEAHPEWAV--KTKDGSVWRDNEG----------EAWVNPYSKEVWDYNIDIAKEAAK-L 136 (316)
T ss_pred ---------------cChHHhhhChhhEE--ECCCCCcccCCCC----------CccCCCCCHHHHHHHHHHHHHHHH-c
Confidence 110000 0111110 0111122322211 111888999999999999999997 9
Q ss_pred CCCeEeeccCCCC
Q 018278 195 GFDGWRFDFVKGY 207 (358)
Q Consensus 195 gvDGfR~D~a~~i 207 (358)
|+|.+.||-+..-
T Consensus 137 GFdEIqfDYIRFP 149 (316)
T PF13200_consen 137 GFDEIQFDYIRFP 149 (316)
T ss_pred CCCEEEeeeeecC
Confidence 9999999987644
No 62
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=97.47 E-value=0.0018 Score=65.38 Aligned_cols=150 Identities=16% Similarity=0.147 Sum_probs=85.4
Q ss_pred CCCceEEEe-----eecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHH-HH
Q 018278 21 TSPALLFQG-----FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD-LK 94 (358)
Q Consensus 21 ~~~~v~~q~-----F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d-~~ 94 (358)
.+..+++|+ +. +.+ .-+-+.|...|+.|+++|+|+|+|--+....+ .|....-|| ++ ..+=..+| |-
T Consensus 311 ~~~~r~~h~dld~vyd-~dp---~qq~~~L~~lLdrlk~~G~ntV~lqafadp~g-d~~~~s~yf-P~-~~lp~r~d~f~ 383 (671)
T PRK14582 311 KSPQRVMHIDLDYVYD-ENP---QQQDRNIDVLIQRVKDMQISTVYLQAFADPDG-DGLVKELYF-PN-RLLPMRADLFN 383 (671)
T ss_pred CCCEEEEEeccccccC-CCH---HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCC-Ccccccccc-Cc-cccccccCCcC
Confidence 444678887 32 122 12468888999999999999999986655433 332222122 22 11111111 11
Q ss_pred H-HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCC
Q 018278 95 S-LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (358)
Q Consensus 95 ~-Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (358)
. .-.-+|++|++|..-+.+--++-..+.+.........+..... ..| ...|+
T Consensus 384 ~~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---------------~~rl~ 436 (671)
T PRK14582 384 RVAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH------------PEQ---------------YRRLS 436 (671)
T ss_pred HHHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC------------CCC---------------CcCCC
Confidence 1 1112899999999988665443211100000000000000000 001 11289
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
-.+|+||+.|.++...++..+.|||+-||-=
T Consensus 437 P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 437 PFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 9999999999999999999889999999763
No 63
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.46 E-value=0.0039 Score=68.66 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=38.6
Q ss_pred ceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCC
Q 018278 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPS 66 (358)
Q Consensus 24 ~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~ 66 (358)
+++.|.|--.|.++ |.|||..+.+.++.+++.|.+.|.|+|+.
T Consensus 174 G~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLh 217 (1693)
T PRK14507 174 GLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLH 217 (1693)
T ss_pred EEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 79999997777665 46999999999999999999999999998
No 64
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.26 E-value=0.0011 Score=61.61 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=82.5
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCC--CCCCCCCc-cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQS--VAPQGYMP-GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~--~~~~gY~~-~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+-+.+.+.++.+++.|| ++|||- .+.. ....||.. .+ +..|+.+|- +.++||+++|++|++|++-+. -+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-Cc
Confidence 67888888998888664 778885 3311 11223321 12 355534664 468999999999999999654 34
Q ss_pred ccccCCCC-----CcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 116 RTAERKDG-----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 116 ~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
+..+++.. ...|++-.. +.+....-| . ....-+|+.||++++...+.++.
T Consensus 95 v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w-------------~-----------g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 95 LADDGPLYYEEAKDAGYLVKDADGSPYLVDFG-------------E-----------FDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred eecCCchhHHHHHHCCeEEECCCCCeeeeccC-------------C-----------CCceeeecCCHHHHHHHHHHHHH
Confidence 44332210 011111110 000000000 0 01123899999999999999988
Q ss_pred HHHhcCCCeEeeccCCCCC
Q 018278 190 LKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 190 w~~~~gvDGfR~D~a~~i~ 208 (358)
.+.+.|||||=+|+-..++
T Consensus 151 ~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 151 MLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HhhhcCCcEEEecCCCCCC
Confidence 7555999999999876543
No 65
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=97.17 E-value=0.0016 Score=60.63 Aligned_cols=132 Identities=12% Similarity=0.149 Sum_probs=76.2
Q ss_pred chHHHHhhhhhHHHc--CCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNA--GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~L--Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++. -++.|+|=--+- ...++ . -|+.|+.+|-. .++||+++|++|+||++-+.+ +++.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~--~-~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~P-~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYW--PKQGW--G-EWKFDPERFPD---PKAMVRELHEMNAELMISIWP-TFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhh--cCCCc--e-eEEEChhhCCC---HHHHHHHHHHCCCEEEEEecC-CcCC
Confidence 567777888877765 567787742111 11221 2 24455346654 578999999999999996543 3544
Q ss_pred cCCC----CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 119 ERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 119 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
+++. ....|++-..........| -....-+|+.||++++...+.++..+.+.
T Consensus 93 ~~~~y~e~~~~g~~v~~~~g~~~~~~w------------------------~g~~~~~Dftnp~a~~w~~~~~~~~~~~~ 148 (319)
T cd06591 93 ETENYKEMDEKGYLIKTDRGPRVTMQF------------------------GGNTRFYDATNPEAREYYWKQLKKNYYDK 148 (319)
T ss_pred CChhHHHHHHCCEEEEcCCCCeeeeeC------------------------CCCccccCCCCHHHHHHHHHHHHHHhhcC
Confidence 3321 0111221110000000000 01112399999999999888776544449
Q ss_pred CCCeEeeccCC
Q 018278 195 GFDGWRFDFVK 205 (358)
Q Consensus 195 gvDGfR~D~a~ 205 (358)
|||||=+|...
T Consensus 149 Gvdg~w~D~~E 159 (319)
T cd06591 149 GVDAWWLDAAE 159 (319)
T ss_pred CCcEEEecCCC
Confidence 99999999976
No 66
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=97.07 E-value=0.0062 Score=60.31 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=76.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCc----cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMP----GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~----~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.....+.|+.|+..-||+|+.==.+-. ....+-.. ..+.++- -|-=..+-+|++|++||+.||+.|.=.-+.-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~-~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWA-NRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT---EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhc-CCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 5677788899999999999996321110 00000000 1122233 2333478899999999999999998765543
Q ss_pred ccccCC--CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 116 RTAERK--DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
...+-. .-...|..|.+..... +..... . ..|. +.+-=.|..|++=|++|.+.+...++.
T Consensus 195 a~~~~~~~gv~~eW~ly~d~~~~~---~~~~~l-~--~~w~------------s~lyl~dP~N~~WQ~yI~~q~~~~~~~ 256 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDDSHSN---QDTYDL-P--DGWP------------SDLYLMDPGNPEWQNYIINQMNKAIQN 256 (559)
T ss_dssp EETT--S--SS-GGBEEESSSBTS---B-EEEE-T--T-E--------------EEEEB-TT-HHHHHHHHHHHHHHHHH
T ss_pred cccCcccccCCchhhhhhccCCCc---cceeec-C--cccc------------cceEEecCCCHHHHHHHHHHHHHHHHc
Confidence 322211 1123465555422210 000000 0 0000 001127889999999999999999999
Q ss_pred cCCCeEeeccCCC
Q 018278 194 IGFDGWRFDFVKG 206 (358)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (358)
+|+|||.+|....
T Consensus 257 ~gFDG~hlDq~G~ 269 (559)
T PF13199_consen 257 FGFDGWHLDQLGN 269 (559)
T ss_dssp HT--EEEEE-S--
T ss_pred cCCceEeeeccCC
Confidence 9999999999864
No 67
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.92 E-value=0.0034 Score=58.34 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=78.8
Q ss_pred CchHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+-+.+.+.++.+++.+| +.|||-.=+. .+|. -|+.|+.+|- +.++||+++|++|+||++-+.+. ++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P~-i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDPG-IR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeecc-cc
Confidence 356778888888877664 6777753221 1232 2344523554 45799999999999999976544 33
Q ss_pred ccCCC------CCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 018278 118 AERKD------GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (358)
Q Consensus 118 ~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w 190 (358)
.++.. ....|+.-.. +.+..... |. + .-.-+|+.||++++...+.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~------------w~-G-----------~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 90 VDQNYSPFLSGMDKGKFCEIESGELFVGKM------------WP-G-----------TTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred CCCCChHHHHHHHCCEEEECCCCCeEEEee------------cC-C-----------CccccCCCChHHHHHHHHHHHHH
Confidence 32110 0111211100 00000000 00 0 01128999999999999999988
Q ss_pred HHhcCCCeEeeccCCC
Q 018278 191 KTEIGFDGWRFDFVKG 206 (358)
Q Consensus 191 ~~~~gvDGfR~D~a~~ 206 (358)
+.+.|||||=+|....
T Consensus 146 ~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 146 LNSQGVDGIWLDMNEP 161 (317)
T ss_pred hhcCCCceEEeeCCCC
Confidence 8669999999998764
No 68
>PRK10426 alpha-glucosidase; Provisional
Probab=96.89 E-value=0.013 Score=59.59 Aligned_cols=137 Identities=19% Similarity=0.311 Sum_probs=77.7
Q ss_pred hHHHHhhhhhHHHcC--CCEEEeCCCCCCC--CCCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 42 YNSLKNSIPDLSNAG--ITHVWLPPPSQSV--APQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~--~~~gY~~~-d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-+.+.+.++.+++.| +++|||- -+... ...|.... | +..|+.+|- +.++||+++|++|+||++-+-+. +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 366778888888877 6889985 22211 11221111 1 234423443 46889999999999999987653 2
Q ss_pred cccCCC----CCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 117 TAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 117 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
..+++. ....|+.-.. +..... .+ +.+.. .-+|+.||++|+...+.++..+
T Consensus 294 ~~~~~~y~e~~~~gy~vk~~~g~~~~~-------------~~---------~~~~~--~~~Dftnp~ar~Ww~~~~~~~~ 349 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKDADGGDYLV-------------EF---------GEFYA--GVVDLTNPEAYEWFKEVIKKNM 349 (635)
T ss_pred CCCCHHHHHHHHCCcEEECCCCCEEEe-------------Ee---------cCCCc--eeecCCCHHHHHHHHHHHHHHH
Confidence 222210 0011211110 000000 00 00001 1289999999999999886544
Q ss_pred HhcCCCeEeeccCCCCC
Q 018278 192 TEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 192 ~~~gvDGfR~D~a~~i~ 208 (358)
.+.|||||=.|.-..+|
T Consensus 350 ~~~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 350 IGLGCSGWMADFGEYLP 366 (635)
T ss_pred hhcCCCEEeeeCCCCCC
Confidence 44999999999866543
No 69
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.87 E-value=0.041 Score=54.38 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=37.2
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQS 68 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~ 68 (358)
.-+|++|+|--.|. -|.|||-.++.. .+.+++.|....+|.|+.+.
T Consensus 15 ~~Gvll~l~SL~s~-~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 15 KSGILLQLYSLPSE-WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred ceEEEeccccCCCC-CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 34799999976666 567999999854 68889988988889998874
No 70
>PRK10658 putative alpha-glucosidase; Provisional
Probab=96.74 E-value=0.0047 Score=62.91 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC----CCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (358)
+.++||+++|++|+||++-+.+ +++.+++. ....|++-.. +....-..| .
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W------------~------------ 380 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKW------------Q------------ 380 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCchHHHHHHHCCeEEECCCCCEeeeeec------------C------------
Confidence 3578999999999999998655 34433320 0112221110 100000001 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC
Q 018278 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 167 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
....-+|+.||++|+...+.++.+++ .|||||-.|....+|
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGERIP 421 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCceee
Confidence 11222899999999999999999988 999999999765444
No 71
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=96.68 E-value=0.001 Score=68.67 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCeeeeecCccccC---CCCCCCC
Q 018278 327 LGYAYILTHPGTPCIVISVTYPL---FHPLNVL 356 (358)
Q Consensus 327 ~a~a~l~~~pG~P~IyyGdE~G~---~~~~n~~ 356 (358)
.+.++.||+||+|+||||+|+|+ .+|.|+-
T Consensus 705 aq~lLqlT~PGVPdIYqG~E~wd~slvDPDNRR 737 (879)
T PRK14511 705 AQTLLKLTSPGVPDVYQGTELWDFSLVDPDNRR 737 (879)
T ss_pred HHHHHHHCcCCCCcccCcccchhccCCCCCCCC
Confidence 35677799999999999999864 4888874
No 72
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.56 E-value=0.0099 Score=55.75 Aligned_cols=143 Identities=17% Similarity=0.267 Sum_probs=78.6
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.| ++.|||-.-+.. +|. -++.|+.+|-+.. -++||+++|++|+||++-+.+. +..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P~-v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR---DFTLDPVRFPGLK-MPEFVDELHANGQHYVPILDPA-ISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc---ceecccccCCCcc-HHHHHHHHHHCCCEEEEEEeCc-ccc
Confidence 3567778888887766 467777432211 111 2334423443221 1899999999999999976543 332
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
+.. ...+..|.++..... ... +..+....+..+ ....-+|+.||++++...+.++.++++.|||
T Consensus 93 ~~~--~~~~~~~~e~~~~g~-------~v~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvd 157 (339)
T cd06602 93 NEP--TGSYPPYDRGLEMDV-------FIK------NDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFD 157 (339)
T ss_pred CcC--CCCCHHHHHHHHCCe-------EEE------CCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 210 011212221110000 000 000000000000 0011279999999999999999888878999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
||=+|.....
T Consensus 158 g~w~D~~Ep~ 167 (339)
T cd06602 158 GLWIDMNEPS 167 (339)
T ss_pred EEEecCCCCc
Confidence 9999987643
No 73
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.50 E-value=0.014 Score=48.80 Aligned_cols=87 Identities=13% Similarity=0.218 Sum_probs=59.8
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~ 103 (358)
++++|.+.||. .. .=+-+...+.+.+++++||++|.|. ...-...-+.+..++.-. -..+..+-+..+.++|.+.
T Consensus 3 GtF~q~~~~d~-~~-~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~-~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 3 GTFLQPWSWDI-HQ-NWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGG-FYMPPVDLLEMILDAADKY 77 (166)
T ss_pred eEEEccccchh-hc-CCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCcc-ccCCcccHHHHHHHHHHHc
Confidence 57788877765 21 1234777899999999999999987 222112223344442222 3336678899999999999
Q ss_pred CCEEEEEeeccc
Q 018278 104 GIKCLADMVINH 115 (358)
Q Consensus 104 Gi~VilD~V~NH 115 (358)
||+|++-+-++.
T Consensus 78 Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 78 GMKVFVGLYFDP 89 (166)
T ss_pred CCEEEEeCCCCc
Confidence 999999877663
No 74
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.50 E-value=0.0099 Score=55.26 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=78.5
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCC-C-CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSV-A-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~-~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+-+.+.+.++.+++.| +++|+|-.=+-.. . ...|. + |+.|+.+|-+ .++||+++|++|++|++-+.+- +
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P~-v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEPF-V 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcCc-c
Confidence 4577788888887766 5777776432110 0 01111 2 4455456654 4789999999999999987543 3
Q ss_pred cccCCCC----CcceeeccC--CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 018278 117 TAERKDG----RGIYCIFEG--GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (358)
Q Consensus 117 ~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w 190 (358)
+.+++.. ...|...+. +.+....-| .+ ...-+|+.||++++...+.++.+
T Consensus 95 ~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w-------------~g-----------~~~~~Dftnp~a~~w~~~~~~~~ 150 (317)
T cd06598 95 LKNSKNWGEAVKAGALLKKDQGGVPTLFDFW-------------FG-----------NTGLIDWFDPAAQAWFHDNYKKL 150 (317)
T ss_pred cCCchhHHHHHhCCCEEEECCCCCEeeeecc-------------CC-----------CccccCCCCHHHHHHHHHHHHHh
Confidence 3333210 011111010 000000000 00 11128889999999999999988
Q ss_pred HHhcCCCeEeeccCC
Q 018278 191 KTEIGFDGWRFDFVK 205 (358)
Q Consensus 191 ~~~~gvDGfR~D~a~ 205 (358)
.+ .|||||=+|...
T Consensus 151 ~~-~Gvdg~w~D~~E 164 (317)
T cd06598 151 ID-QGVTGWWGDLGE 164 (317)
T ss_pred hh-CCccEEEecCCC
Confidence 66 999999999975
No 75
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.43 E-value=0.023 Score=58.06 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCC
Q 018278 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67 (358)
Q Consensus 24 ~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~ 67 (358)
+|++|.|--.|..+ |.|||..+.+-++.+++.|.+.+.|+|+..
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 79999997776544 469999999999999999999999999983
No 76
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.42 E-value=0.011 Score=55.56 Aligned_cols=129 Identities=18% Similarity=0.259 Sum_probs=77.8
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.|| ++|||-+-+.. +|.. +..|+.+|- +.++|++++|++|++|++-+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 45777888888888775 77887644332 2321 345523664 3589999999999999987654 2322
Q ss_pred cCC------CCCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 119 ERK------DGRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 119 ~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
+.. .....|++... +.+.....| .+ ...-+|+.||++++...+.++.++
T Consensus 91 ~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w-------------~g-----------~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 91 DPGYDVYEEGLENDYFVKDPDGELYIGRVW-------------PG-----------LSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred CCCChHHHHHHHCCeEEECCCCCEEEEEec-------------CC-----------CccccCCCChHHHHHHHHHHHHHh
Confidence 211 00011221110 000000000 00 011279999999999999999888
Q ss_pred HhcCCCeEeeccCC
Q 018278 192 TEIGFDGWRFDFVK 205 (358)
Q Consensus 192 ~~~gvDGfR~D~a~ 205 (358)
+ .|||||-+|...
T Consensus 147 ~-~Gvdg~w~D~~E 159 (339)
T cd06604 147 D-LGVDGIWNDMNE 159 (339)
T ss_pred h-CCCceEeecCCC
Confidence 6 999999999764
No 77
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=96.08 E-value=0.0078 Score=58.67 Aligned_cols=139 Identities=19% Similarity=0.379 Sum_probs=75.4
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.| +++|+|-.-+.. +|. + +..|+.+|- +.++|++.+|++|++|++-+.+. +..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P~-v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHPF-VSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEESE-EET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeecc-cCC
Confidence 4677777788777655 466666543222 122 2 345523554 67999999999999999998883 433
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
++. .+..|...... ++ ... +..+....+..+ ....-+|+.||++++...+.++.+++.+|||
T Consensus 110 ~~~----~~~~~~~~~~~---~~---~v~-------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 172 (441)
T PF01055_consen 110 DSP----DYENYDEAKEK---GY---LVK-------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD 172 (441)
T ss_dssp TTT----B-HHHHHHHHT---T----BEB-------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S
T ss_pred CCC----cchhhhhHhhc---Cc---eee-------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc
Confidence 322 01111110000 00 000 000000000000 0011288999999999999999999977999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
||-+|.....
T Consensus 173 g~w~D~~E~~ 182 (441)
T PF01055_consen 173 GWWLDFGEPS 182 (441)
T ss_dssp EEEEESTTTB
T ss_pred eEEeecCCcc
Confidence 9999995444
No 78
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=95.93 E-value=0.04 Score=49.44 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (358)
+.+..++.|+.+|++|+||++=+--+|.+...
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------------------------ 80 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------------------------ 80 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------------------------
Confidence 46889999999999999999987655443210
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 169 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
-...+++-++.+.+.+..+++.+|+||+=+|-=
T Consensus 81 ---~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 81 ---ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 011245566777777777777899999999963
No 79
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=95.88 E-value=0.082 Score=49.82 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=73.9
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ecc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD------ASKYGSQADLKSLIQAFRQKGIKCLADM-VIN 114 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id------~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~N 114 (358)
...|.+.++.++...+|.+++- +... ..+.+.+..|=.+. +..+=|.+|+++||+-|.++||.||-.+ ++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PG 94 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH-ITDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPG 94 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe-EEcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCch
Confidence 6777888899999999999874 1111 11222222221111 0112289999999999999999999999 788
Q ss_pred cccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 115 HRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 115 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
|+..-..... . ..+.....+...+.. ...-.||..+|++.+++.+++..+++-+
T Consensus 95 H~~a~~~~~p-------~------------l~~~~~~~~~~~~~~-------~~~~~L~~~~~~t~~fl~~vl~E~~~lF 148 (348)
T cd06562 95 HTGSWGQGYP-------E------------LLTGCYAVWRKYCPE-------PPCGQLNPTNPKTYDFLKTLFKEVSELF 148 (348)
T ss_pred hhHHHHHhCh-------h------------hhCCCCccccccccC-------CCCccccCCChhHHHHHHHHHHHHHHhc
Confidence 8865321000 0 000000000000000 0011289999999999999999998844
No 80
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.59 E-value=0.048 Score=50.63 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=36.7
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+.++.||+.|+|+|-|=- +..|.. .-+-+.++..+|.++|++.||+|+||+=+..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 3568899999999998853 222222 1234577899999999999999999985543
No 81
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.053 Score=56.12 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCCCC----CcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC-
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERKDG----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ- 167 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (358)
.+.|++++|++|||+|.=+-+. ...+++.. ...|+.-. ..+.......+.
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k~------------------------~~g~~~~~~~w~~ 377 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVKD------------------------PDGEIYQADFWPG 377 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEEC------------------------CCCCEeeecccCC
Confidence 4599999999999999988765 32333210 01121100 001111111111
Q ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEeeccCCCCC
Q 018278 168 PAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 168 ~~~dln~~n~~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
..+-+|+.||++|+.-.+ ..+.+++ +|||||-.|.....+
T Consensus 378 ~~a~~DFtnp~~r~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 378 NSAFPDFTNPDAREWWASDKKKNLLD-LGVDGFWNDMNEPEP 418 (772)
T ss_pred cccccCCCCHHHHHHHHHHHHhHHHh-cCccEEEccCCCCcc
Confidence 233389999999999994 5567887 999999999976553
No 82
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.27 E-value=0.044 Score=50.32 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=72.3
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCC-----CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+-+.+.+-++.+++.| +++|||=.=+... ...+|. -++.|+.+|- |.++||+++|++|+|||+-+-+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCC
Confidence 5677777788777655 5677763211110 011222 2445534664 4589999999999999998876
Q ss_pred ccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.. +.+.. ...|..+..+.. . ....+ ...-+|+.||+.++...+.++.-+..
T Consensus 97 ~~-~~~~~--~~~y~~~~~~~~-----------~----~~~~~-----------~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 97 AD-GIRAH--EDQYPEMAKALG-----------V----DPATE-----------GPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred Cc-ccCCC--cHHHHHHHHhcC-----------C----CcccC-----------CeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 43 22110 001111111000 0 00000 00127999999998776666544444
Q ss_pred cCCCeEeeccC
Q 018278 194 IGFDGWRFDFV 204 (358)
Q Consensus 194 ~gvDGfR~D~a 204 (358)
.|||||=.|..
T Consensus 148 ~Gidg~W~D~~ 158 (292)
T cd06595 148 QGVDFWWLDWQ 158 (292)
T ss_pred cCCcEEEecCC
Confidence 99999999964
No 83
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.25 E-value=0.023 Score=51.42 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=49.0
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC-ccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~-~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
.|-.+.|+.. . ..-.-..+-++.++++|+++|-|.-.++. +. +..-+.++ + ...+.|+++|+.|++
T Consensus 7 ~v~~~G~n~~-w----~~~~~~~~~~~~~~~~G~n~VRi~v~~~~-----~~~~~~~~~~~-~--~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 7 PVNWRGFNTH-W----YNPSITEADFDQLKALGFNTVRIPVGWEA-----YQEPNPGYNYD-E--TYLARLDRIVDAAQA 73 (281)
T ss_dssp BEEEEEEEET-T----SGGGSHHHHHHHHHHTTESEEEEEEESTS-----TSTTSTTTSBT-H--HHHHHHHHHHHHHHH
T ss_pred eEEeeeeecc-c----CCCCCHHHHHHHHHHCCCCEEEeCCCHHH-----hcCCCCCcccc-H--HHHHHHHHHHHHHHh
Confidence 4556666533 1 11125566799999999999999765322 11 00000122 1 236889999999999
Q ss_pred cCCEEEEEeecc
Q 018278 103 KGIKCLADMVIN 114 (358)
Q Consensus 103 ~Gi~VilD~V~N 114 (358)
+||+||+|+--.
T Consensus 74 ~gi~vild~h~~ 85 (281)
T PF00150_consen 74 YGIYVILDLHNA 85 (281)
T ss_dssp TT-EEEEEEEES
T ss_pred CCCeEEEEeccC
Confidence 999999996544
No 84
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.32 Score=47.70 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=31.1
Q ss_pred ceEEEeeecCCCCC-CCCchHHHHhhhhh-HHHcCCCEEEeCCCCCC
Q 018278 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPD-LSNAGITHVWLPPPSQS 68 (358)
Q Consensus 24 ~v~~q~F~~~~~~~-~~G~~~gl~~~L~y-l~~LGv~~I~l~Pi~~~ 68 (358)
++-+|.+.-.+++. |.|||-.++-++.- +.+-|.+.+.|+|+...
T Consensus 15 g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 15 GSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred cceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 34444443334443 36999999988654 45999999999998753
No 85
>PLN02950 4-alpha-glucanotransferase
Probab=94.96 E-value=0.075 Score=56.05 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=63.5
Q ss_pred cCCCCCCceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC------CCCCCccccCCCCCCCCCC
Q 018278 17 FLPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt 89 (358)
.+.|-..+|++|.|--.+..+ |.|||.++.+.+|.+++.|.+.|+|+|+.+... +-.|.+.+-++++ |-|=+
T Consensus 256 ~~~~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falN-PlyI~ 334 (909)
T PLN02950 256 EMPWRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALH-PLYLR 334 (909)
T ss_pred CCCccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccC-hhhcC
Confidence 355777899999997776653 469999999999999999999999999988642 2379999999999 98887
Q ss_pred HHHHH
Q 018278 90 QADLK 94 (358)
Q Consensus 90 ~~d~~ 94 (358)
.+++.
T Consensus 335 l~~l~ 339 (909)
T PLN02950 335 VQALS 339 (909)
T ss_pred HHHHH
Confidence 76663
No 86
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=94.87 E-value=0.09 Score=49.36 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=76.5
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.| +++|||-.-+. .+|. .|+.|+.+|- +.++||+++|++|+||++-+.+--. .
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v~-~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHIK-R 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCcee-c
Confidence 4677778888787755 56777753221 1232 2455634665 4588999999999999998865432 2
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH--hcC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKT--EIG 195 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~--~~g 195 (358)
+.. +..|..+.... + ...+ ..+.......+ ....-+|+.||++++...+.++..+. ..|
T Consensus 91 ~~~-----~~~y~e~~~~g---~----~vk~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g 152 (339)
T cd06603 91 DDG-----YYVYKEAKDKG---Y----LVKN------SDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTE 152 (339)
T ss_pred CCC-----CHHHHHHHHCC---e----EEEC------CCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCC
Confidence 110 00111100000 0 0000 00000000000 01122899999999999999998875 368
Q ss_pred CCeEeeccCC
Q 018278 196 FDGWRFDFVK 205 (358)
Q Consensus 196 vDGfR~D~a~ 205 (358)
+|||=+|...
T Consensus 153 ~~g~w~D~~E 162 (339)
T cd06603 153 NLYIWNDMNE 162 (339)
T ss_pred CceEEeccCC
Confidence 9999988753
No 87
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=94.86 E-value=0.17 Score=51.62 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=79.4
Q ss_pred CchHHHHhhhhhHHHcCCC--EEEeCCCCCCCCCCCCC--ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 40 GWYNSLKNSIPDLSNAGIT--HVWLPPPSQSVAPQGYM--PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~--~I~l~Pi~~~~~~~gY~--~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.+..+.+..++.+++||. .+|. +--|. -.|| .+|+..|++ ++++++.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~--------DiDyMd~ykDF-Tvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVI--------DIDYMDGYKDF-TVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeee--------ehhhhhcccce-eeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5677788888888887774 4432 11122 3453 355467777 99999999999999977554331
Q ss_pred ccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 116 RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
.. +. .|..|+.+......--. .++... ..+..++ ..+=+|+.||++.....+.++..-++.
T Consensus 376 s~-~~-----~y~~y~~g~~~~v~I~~-----------~~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~v 437 (805)
T KOG1065|consen 376 ST-NS-----SYGPYDRGVAKDVLIKN-----------REGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEV 437 (805)
T ss_pred cc-Cc-----cchhhhhhhhhceeeec-----------ccCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccC
Confidence 11 11 12223332211110000 000000 1111111 223388999999999999998888889
Q ss_pred CCCeEeeccC
Q 018278 195 GFDGWRFDFV 204 (358)
Q Consensus 195 gvDGfR~D~a 204 (358)
++|||-+|+-
T Consensus 438 p~dg~wiDmn 447 (805)
T KOG1065|consen 438 PFDGFWIDMN 447 (805)
T ss_pred CccceEEECC
Confidence 9999999993
No 88
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=94.73 E-value=0.096 Score=53.62 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=63.1
Q ss_pred CCCCCCceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-----C-CCCCccccCCCCCCCCCCH
Q 018278 18 LPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-----P-QGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-----~-~gY~~~d~~~id~~~~Gt~ 90 (358)
+.|-..+|++|+|--.+..+ |.|||-.+.+.++.+++.|.+.|+|+|+.+... + ..|++.+-++++ |-|=+.
T Consensus 57 ~~~R~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlN-PlyIdl 135 (745)
T PLN03236 57 GAWKGSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALH-PLYLKL 135 (745)
T ss_pred cchhhheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccC-hHHcCH
Confidence 56778899999997777654 469999999999999999999999999988642 2 479999999999 888776
Q ss_pred HHHH
Q 018278 91 ADLK 94 (358)
Q Consensus 91 ~d~~ 94 (358)
+.+.
T Consensus 136 e~L~ 139 (745)
T PLN03236 136 KELV 139 (745)
T ss_pred HHhh
Confidence 6553
No 89
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=94.73 E-value=0.41 Score=44.72 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=74.3
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---------C--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---------D--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---------d--~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.|.+.+|.++..++|.+++--. .. ..+...+..|=.+ . ...+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4677888889999999999998531 11 1122222211111 1 01223799999999999999999999
Q ss_pred Ee-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 110 DM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 110 D~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
.+ ++.|+..--.. |-.+... .+. ...... .-.....||..+|++.+++.+++.
T Consensus 94 EiD~PGH~~a~~~~----~p~l~~~------~~~--------~~~~~~--------~~~~~~~l~~~~~~t~~fl~~v~~ 147 (329)
T cd06568 94 EIDMPGHTNAALAA----YPELNCD------GKA--------KPLYTG--------IEVGFSSLDVDKPTTYEFVDDVFR 147 (329)
T ss_pred ecCCcHHHHHHHHh----ChhhccC------CCC--------Cccccc--------cCCCCcccCCCCHHHHHHHHHHHH
Confidence 98 77887642110 0001000 000 000000 000012389999999999999999
Q ss_pred HHHHhc
Q 018278 189 WLKTEI 194 (358)
Q Consensus 189 ~w~~~~ 194 (358)
.+++-+
T Consensus 148 E~~~~f 153 (329)
T cd06568 148 ELAALT 153 (329)
T ss_pred HHHHhC
Confidence 988743
No 90
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.67 E-value=0.35 Score=47.06 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCC----C--CCC---------CCCCCCCccccCCCCCCCC-------------CCHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPP----P--SQS---------VAPQGYMPGRLYDLDASKY-------------GSQAD 92 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~P----i--~~~---------~~~~gY~~~d~~~id~~~~-------------Gt~~d 92 (358)
+.+.|.+.+|.+.-..+|.++|-= - .+. .++.++...+...+- |.+ =|.+|
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~-~~~~~~~~~~~~~~g~YT~~d 98 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLL-PQLGSGPDTNNSGSGYYSRAD 98 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccc-cccccCcccCcccCCccCHHH
Confidence 467788888888888888888741 0 011 112222222222222 222 17999
Q ss_pred HHHHHHHHHHcCCEEEEEe-ecccccc
Q 018278 93 LKSLIQAFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~-V~NH~~~ 118 (358)
+++||+-|+++||.||-.+ ++.|+..
T Consensus 99 i~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 99 YIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 9999999999999999998 7888865
No 91
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.058 Score=49.23 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=38.5
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
....++-|+.-.+.|++-|..+=.......+ +-..-|++|++.||+.||+||+|+-+.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~---------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE---------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecccCCchHH---------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 3444455666677888888765332221111 123457999999999999999997654
No 92
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=94.59 E-value=0.085 Score=55.58 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.||.||++|+.-.+.++.+++ .|||||=+|+-
T Consensus 304 pDFTnP~ar~WW~~~~k~l~d-~GVDG~W~Dmn 335 (978)
T PLN02763 304 PDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMN 335 (978)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCC
Confidence 689999999999999998888 99999999984
No 93
>PRK09936 hypothetical protein; Provisional
Probab=94.50 E-value=0.16 Score=45.74 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC-HHHHHHHH
Q 018278 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-QADLKSLI 97 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-~~d~~~Lv 97 (358)
+.....++||-++-|+. =+-....+.+.-++++|+++|.+- ..+| -+ +.||+ ..-|.+++
T Consensus 18 ~~a~~g~F~Qp~n~d~~----~~~~qWq~~~~~~~~~G~~tLivQ-------Wt~y-------G~-~~fg~~~g~La~~l 78 (296)
T PRK09936 18 SQAMKGIFYQPQNRDSQ----VTDTQWQGLWSQLRLQGFDTLVVQ-------WTRY-------GD-ADFGGQRGWLAKRL 78 (296)
T ss_pred hhccccceeccccccCC----CCHHHHHHHHHHHHHcCCcEEEEE-------eeec-------cC-CCcccchHHHHHHH
Confidence 66788899998764432 124566777888999999999874 2233 23 45665 45689999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccC---CCCccCCCCCCCCCCCCCCCCCC-CC
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR---GDKEYSDGQGNDDTGEDFQPAPD-ID 173 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d-ln 173 (358)
++|++.||+|++=+-++-- |+.....+......|-...... ....|....+....+++++.-.| ++
T Consensus 79 ~~A~~~Gl~v~vGL~~Dp~----------y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~ 148 (296)
T PRK09936 79 AAAQQAGLKLVVGLYADPE----------FFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLN 148 (296)
T ss_pred HHHHHcCCEEEEcccCChH----------HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhc
Confidence 9999999999988765421 1110000000000000000000 00011111112223444444444 78
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCC------eEeeccCCCCCHHHHHHHHHhcCC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFD------GWRFDFVKGYAPSITKVYMENTSP 221 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvD------GfR~D~a~~i~~~~~~~~~~~~~p 221 (358)
+..++-|+.+...+.-.+. .++ .+-.=....+.++.+..+++...+
T Consensus 149 W~~~~rR~~L~~~L~~~~~--~l~~~~kPv~ISay~~g~~sP~~l~~Wl~~l~~ 200 (296)
T PRK09936 149 WRDEARRQPLLTWLNAAQR--LIDVSAKPVHISAFFAGNMSPDGYRQWLEQLKA 200 (296)
T ss_pred ccCHHHHHHHHHHHHHHHH--hCCCCCCCeEEEeecccCCChHHHHHHHHHHhh
Confidence 8888888888888877765 333 222222234456666666555433
No 94
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=94.39 E-value=0.066 Score=50.32 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=40.5
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++...+-|...+++|++.|+.+=..+- + ..=-..+.|++|++.||++||+||+|+-+.
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------~-~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTSLHIPE--------------D-DPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCcCC--------------C-CHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 35777777788888999999987521111 1 111246889999999999999999998654
No 95
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.20 E-value=0.48 Score=44.83 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=71.9
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCC------CCCCC------CCCCCccc-------cCCCCCC--CCCCHHHHHHHHHHH
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPP------SQSVA------PQGYMPGR-------LYDLDAS--KYGSQADLKSLIQAF 100 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi------~~~~~------~~gY~~~d-------~~~id~~--~~Gt~~d~~~Lv~~~ 100 (358)
.+.|.+.++.++..++|.+++--. +++++ ..+|...+ ..... + .+=|.+|++++|+-|
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~-~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGT-PYGGFYTQEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCC-ccCceECHHHHHHHHHHH
Confidence 677778888999999999998421 01110 00111110 11111 1 122699999999999
Q ss_pred HHcCCEEEEEe-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 101 RQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 101 H~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
+++||.||-.+ ++.|+..--.. +-.+..... ...+ +. .......-||..+|++
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~----~pel~~~~~--~~~~-----------~~---------~~~~~~~~L~~~~~~t 149 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA----YPELGCTGG--PGSV-----------VS---------VQGVVSNVLCPGKPET 149 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh----CccccCCCC--CCcc-----------cc---------ccCcCCCccCCCChhH
Confidence 99999999998 78888643110 000000000 0000 00 0000011289999999
Q ss_pred HHHHHHHHHHHHHhc
Q 018278 180 QKELSDWMNWLKTEI 194 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~ 194 (358)
.+++.+.+..+++-+
T Consensus 150 ~~f~~~ll~E~~~lF 164 (357)
T cd06563 150 YTFLEDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999888733
No 96
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=94.19 E-value=0.18 Score=47.06 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=71.3
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-..+.+.++.+++.+ +++|||=.=+. .+|. .|+.|+.+|-++ ++|++++|++|++|++-+.+- +..
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~ 90 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-ISY 90 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-eec
Confidence 4566777777776655 57777654222 1232 245553466554 789999999999998876542 110
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
...|. +.+. . .|+.||++|+.-.+..+.+.+ .||||
T Consensus 91 -------------------g~~~~-------------~~~~---------~--pDftnp~ar~wW~~~~~~l~~-~Gv~~ 126 (332)
T cd06601 91 -------------------GGGLG-------------SPGL---------Y--PDLGRPDVREWWGNQYKYLFD-IGLEF 126 (332)
T ss_pred -------------------CccCC-------------CCce---------e--eCCCCHHHHHHHHHHHHHHHh-CCCce
Confidence 00110 0000 1 688999999998888888887 89999
Q ss_pred EeeccC
Q 018278 199 WRFDFV 204 (358)
Q Consensus 199 fR~D~a 204 (358)
|=.|+.
T Consensus 127 ~W~Dmn 132 (332)
T cd06601 127 VWQDMT 132 (332)
T ss_pred eecCCC
Confidence 999975
No 97
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=94.13 E-value=0.19 Score=46.47 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=73.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---------C-CCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---------D-ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---------d-~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
+...|.+.++.++..++|.++|-= ... ..+.+....|=.+ . +..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl-~D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHL-TDD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEee-ecC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 467788889999999999998741 111 0122221111111 1 012337899999999999999999999
Q ss_pred e-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 111 M-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 111 ~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
+ ++.|+..--..... ... . +.....+. .....||..+|++.+++.+.+..
T Consensus 92 iD~PGH~~a~~~~~p~----l~~--~-----------~~~~~~~~------------~~~~~l~~~~~~t~~fl~~l~~e 142 (303)
T cd02742 92 IDMPGHSTAFVKSFPK----LLT--E-----------CYAGLKLR------------DVFDPLDPTLPKGYDFLDDLFGE 142 (303)
T ss_pred ccchHHHHHHHHhCHH----hcc--C-----------ccccCCCC------------CCCCccCCCCccHHHHHHHHHHH
Confidence 8 78888653110000 000 0 00000000 00112899999999999999999
Q ss_pred HHHhc
Q 018278 190 LKTEI 194 (358)
Q Consensus 190 w~~~~ 194 (358)
+++-+
T Consensus 143 ~~~lf 147 (303)
T cd02742 143 IAELF 147 (303)
T ss_pred HHHhC
Confidence 98843
No 98
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.05 E-value=0.43 Score=44.53 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=73.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc--------------------cCCCC-CCCCCCHHHHHHHHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR--------------------LYDLD-ASKYGSQADLKSLIQA 99 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d--------------------~~~id-~~~~Gt~~d~~~Lv~~ 99 (358)
+...|.+.++.++..++|.++|-= .. ++++.+.. ..... ...+=|.+|++++|+-
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHl-tD---~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHL-ND---NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEee-cC---CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 467788888999999999999821 00 11111110 01111 0222389999999999
Q ss_pred HHHcCCEEEEEe-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 018278 100 FRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (358)
Q Consensus 100 ~H~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~ 178 (358)
|.++||.||-.+ ++.|+..--.. +.. ..+... ........||..+|+
T Consensus 91 A~~rgI~vIPEID~PGH~~a~~~~-------~pe------------l~~~~~-------------~~~~~~~~l~~~~~~ 138 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLAFTKA-------MPE------------LGLKNP-------------FSKYDKDTLDISNPE 138 (326)
T ss_pred HHHcCCeEeccCCCcHHHHHHHHh-------hHH------------hcCCCc-------------ccCCCcccccCCCHH
Confidence 999999999988 78887653110 000 000000 000011128999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 018278 179 VQKELSDWMNWLKTEIG 195 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~g 195 (358)
+.+++.+++...++-+.
T Consensus 139 t~~f~~~l~~E~~~~f~ 155 (326)
T cd06564 139 AVKFVKALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999988655
No 99
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=93.73 E-value=0.16 Score=52.10 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=37.2
Q ss_pred CchHHHHhhhhhHH--HcCCCEEE-eCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 40 GWYNSLKNSIPDLS--NAGITHVW-LPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 40 G~~~gl~~~L~yl~--~LGv~~I~-l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
|++..+++.+.... -+|++=|. +.|.-+. ....|.+.+-+.+| |-|=+.+++.++.
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alN-PlyI~~e~l~e~~ 223 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLN-VIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccC-hHHcCHHHHhhhh
Confidence 56888877766332 24466666 3443322 46679999999999 8888877766653
No 100
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.69 E-value=0.55 Score=43.30 Aligned_cols=115 Identities=9% Similarity=0.032 Sum_probs=72.4
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEe-ecccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA-SKYGSQADLKSLIQAFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~NH~~~ 118 (358)
+...|.+.++.++.+|+|.++|--- . .|....+-.+.+ ...=|.+|++++++-|.++||.||-.+ ++.|+..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~-D-----~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYE-D-----TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe-c-----ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 4677888899999999999998320 0 011111111220 122279999999999999999999887 6777754
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
--+.+ .+.... +. ... -.-||-.+|++.+.+.+.+...++-+.
T Consensus 89 ~l~~~--~~~~l~--------~~---------~~~---------------~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 89 ILKHP--EFRHLR--------EV---------DDP---------------PQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHhCc--cccccc--------cc---------CCC---------------CCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 21100 000000 00 000 011899999999999999999988443
No 101
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.67 E-value=0.65 Score=43.00 Aligned_cols=124 Identities=13% Similarity=0.182 Sum_probs=73.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---C-CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ecccc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---D-ASKYGSQADLKSLIQAFRQKGIKCLADM-VINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---d-~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~NH~ 116 (358)
.+.|.+.|+.++..++|.+++- +.+. ..+.+.+..|=.+ . ...+=|.+|+++||+-|.++||.||-.+ ++.|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWH-LTDD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEE-EecC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 6778888999999999988874 1111 1122222222111 1 0123379999999999999999999998 78888
Q ss_pred cccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
..--.. |-.+... .... .. . ..+. ..-+-||..||++.+++.+++..+++-
T Consensus 95 ~a~~~~----ypel~~~-~~~~-~~------~--~~~~------------~~~~~l~~~~p~t~~f~~~l~~E~~~l 145 (311)
T cd06570 95 SAIAVA----YPELASG-PGPY-VI------E--RGWG------------VFEPLLDPTNEETYTFLDNLFGEMAEL 145 (311)
T ss_pred HHHHHh----CHHhccC-CCcc-cc------c--cccc------------cCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 652110 0000000 0000 00 0 0000 001138999999999999999988873
No 102
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.67 E-value=0.55 Score=43.36 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
+++.+|+.++.+.+.+...++ .|+|||=+|.+..+
T Consensus 138 vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy 172 (315)
T TIGR01370 138 VKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAF 172 (315)
T ss_pred EecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhh
Confidence 889999999999999888877 89999999987654
No 103
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.56 E-value=0.32 Score=43.78 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=35.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHH---HHHHHHHHHHcCCEEEEEee
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD---LKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d---~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+.-||.-||+.|.|= ++..| ...| + +--|...| ..++.+.|.+.||||++|+-
T Consensus 67 D~~~iLK~~GvNyvRlR-vwndP~dsng---------n-~yggGnnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 67 DALQILKNHGVNYVRLR-VWNDPYDSNG---------N-GYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHcCcCeEEEE-EecCCccCCC---------C-ccCCCcchHHHHHHHHHHHHhcCcEEEeecc
Confidence 45788999999998874 33222 1111 1 22233334 44566788889999999973
No 104
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=93.12 E-value=0.25 Score=46.80 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
..+|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 3478899999888888888899999999974
No 105
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=93.10 E-value=0.51 Score=43.73 Aligned_cols=64 Identities=27% Similarity=0.370 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 167 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (358)
.+.+.+++-|+.||++|+||++-+ +... . .
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~~----------------------~---------------~-------- 86 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGAN----------------------G---------------H-------- 86 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCCC----------------------C---------------c--------
Confidence 356789999999999999999864 2110 0 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 168 ~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
....+++-++.+.+.+..+++++|+||+=+|-=.
T Consensus 87 ----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 87 ----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 1134567788888888888888999999999743
No 106
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.88 E-value=0.47 Score=42.54 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.+++.|+.+++.+..+++++|+||+=+|-=
T Consensus 79 ~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 79 NDPAKRKALVDKIINYVVSYNLDGIDVDLE 108 (253)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCceeEEee
Confidence 478889999998888888899999999974
No 107
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=92.34 E-value=1.6 Score=39.48 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=43.6
Q ss_pred CchHHHHhhhhhHHH--cCCCEEEeCCCCCCCCCCCCCcccc-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSN--AGITHVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~--LGv~~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+-+.+.+.++.+++ +-+++|+|-+-+... | .++ +..|+.+|-+ .++||+++|++|++|++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFPN---PKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCCC---HHHHHHHHHHCCCEEEEEeC
Confidence 467888888888877 455688886544332 1 121 2455346654 57899999999999999653
No 108
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=92.10 E-value=0.11 Score=48.83 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=74.3
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC-----CCC----CCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-----ASK----YGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id-----~~~----~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+.|.+.++.++.+++|.++|-- ... ..+.+....+-.+. ++. +=|.+|+++||+.|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl-~D~-~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHL-SDD-QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEE-ESS-TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEE-ecC-CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 467888889999999999999852 111 11111111111000 011 3478999999999999999999999
Q ss_pred -ecccccccCCCCCcceeeccCCC-CCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 112 -VINHRTAERKDGRGIYCIFEGGT-SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 112 -V~NH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
++.|++.--.. +-.+.... +.. ..+.. ..+ ....-..||..+|++.+++.+.+..
T Consensus 94 d~PGH~~~~l~~----~p~~~~~~~~~~-~~~~~-~~~-----------------~~~~~~~l~~~~~~t~~~~~~l~~e 150 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGCSAWPED-KSWPN-STC-----------------WYPDNGVLDPSNPETYEFLKDLLDE 150 (351)
T ss_dssp EESSS-HHHHHH----HHHHCCCHTTCS-SSCEE-EET-----------------TSEEEEEE-TTSHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHh----Cchhhccccccc-ccccc-ccc-----------------cCCCcccCCCCcHHHHHHHHHHHHH
Confidence 88898763210 00000000 000 00000 000 0000011899999999999999999
Q ss_pred HHHhcCCCeEee
Q 018278 190 LKTEIGFDGWRF 201 (358)
Q Consensus 190 w~~~~gvDGfR~ 201 (358)
+++-+.-.-|.+
T Consensus 151 ~~~~f~~~~iHi 162 (351)
T PF00728_consen 151 VADLFPSKYIHI 162 (351)
T ss_dssp HHHHHTSSEEEE
T ss_pred HHhhCCCCeEEe
Confidence 998666444444
No 109
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=91.98 E-value=3.1 Score=37.59 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=42.3
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCC-CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY-~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-+.+...+-+|+-+++|+..|.+-=-+.. ++. ...|+..+. + ..++++||+-|+++|++|+|=+
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~---~~~~~~~d~~~~~-~----~~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYG---WEKDDDFDFTKPI-P----DFDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCG---S--TTT--TT-B--T----T--HHHHHHHHHHTT-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecccccc---ccccccccccccC-C----ccCHHHHHHHHHHcCCCEEEEE
Confidence 568999999999999999999998211111 111 345555555 3 3789999999999999999864
No 110
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=91.81 E-value=4.1 Score=36.86 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=75.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHH-HHH-HcCCEEEEEeecccccccCC
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ-AFR-QKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~-~~H-~~Gi~VilD~V~NH~~~~~~ 121 (358)
.|-.-++.|+++|+++|+|-++....++.-.+.. |=++ .++=-.+|+-.=|. .++ +.|++|+.-+.+ .+-+-+
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpn-r~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp 92 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPN-RHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLP 92 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCC-CCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCC
Confidence 3445577899999999999988766544333332 3355 55555566544433 444 899999999876 322211
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
+.. .+....... ........|..-+|++|+.|.+..+-+...-.+||+=|
T Consensus 93 ----------~~~-----~~~~~~~~~---------------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 93 ----------KVK-----RADEVRTDR---------------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred ----------Ccc-----hhhhccccC---------------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 000 000000000 00111223777789999999999999998459999988
No 111
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.70 E-value=0.66 Score=44.19 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=67.6
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
+.+.+.++-+|++|||.|-|..+.=+ .++ |.=| +-+.|.++|+.|+++||+|||-+.. +...
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~------------~lE-P~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~P-- 73 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWS------------WLE-PEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAPP-- 73 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHH------------HH--SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechh------------hcc-CCCCeeecHHHHHHHHHHHhccCeEEEEecc-cccc--
Confidence 55677799999999999999775211 111 1111 1334778999999999999997762 2211
Q ss_pred CCCCcceeeccCCCCCC-CCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----
Q 018278 121 KDGRGIYCIFEGGTSDD-RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG---- 195 (358)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g---- 195 (358)
.|.. .. .+.. ..+.... .. ....-...+..+|..|+++.+.++.++++|+
T Consensus 74 -----~Wl~-~~-~Pe~~~~~~~g~-------~~-----------~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~ 128 (374)
T PF02449_consen 74 -----AWLY-DK-YPEILPVDADGR-------RR-----------GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPA 128 (374)
T ss_dssp -----HHHH-CC-SGCCC-B-TTTS-------BE-----------ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred -----cchh-hh-cccccccCCCCC-------cC-----------ccCCccccchhHHHHHHHHHHHHHHHHhhccccce
Confidence 1211 10 0000 0000000 00 0011122577899999999998887777665
Q ss_pred CCeEeeccCCC
Q 018278 196 FDGWRFDFVKG 206 (358)
Q Consensus 196 vDGfR~D~a~~ 206 (358)
|-|+-+|.=..
T Consensus 129 vi~~~i~NE~~ 139 (374)
T PF02449_consen 129 VIGWQIDNEPG 139 (374)
T ss_dssp EEEEEECCSTT
T ss_pred EEEEEeccccC
Confidence 66888887543
No 112
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=90.44 E-value=0.82 Score=41.79 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=32.9
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-..-+++||+||+|+|.+ |+|| |.. +=.+..+.+.+.||.||+|+-.-+.+.+.
T Consensus 55 C~rDi~~l~~LgiNtIRV-----------------Y~vd-p~~----nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRV-----------------YSVD-PSK----NHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp HHHHHHHHHHHT-SEEEE-----------------S----TTS------HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred HHHhHHHHHHcCCCEEEE-----------------EEeC-CCC----CHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 344578999999999986 4455 433 22455566788999999999777666553
No 113
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=90.23 E-value=0.54 Score=44.98 Aligned_cols=52 Identities=12% Similarity=0.284 Sum_probs=43.8
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhc
Q 018278 166 FQPAPDIDH-----LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT 219 (358)
Q Consensus 166 ~~~~~dln~-----~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~ 219 (358)
|++..+|+| .||.++++|.++.+..++ -++|||+|.++.-|..+.+.++++.
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPlhVaeylLd~A 416 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPLHVAEYLLDAA 416 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcHHHHHHHHHHH
Confidence 356777777 678999999999999986 7899999999999998888776543
No 114
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.11 E-value=3.4 Score=39.43 Aligned_cols=139 Identities=19% Similarity=0.143 Sum_probs=79.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCC-CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
+-++-+|+.|...|-|+-=+- ...-|.=..++|..++ ... ..|=+++|+++|+++||++-+= |...+
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~-~~p-krDiv~el~~A~rk~Glk~G~Y----~S~~D------ 152 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVD-TGP-KRDLVGELADAVRKRGLKFGLY----HSLFD------ 152 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccC-CCC-CcchHHHHHHHHHHcCCeEEEE----cCHHH------
Confidence 446678999999988764211 1111111233555555 444 5688999999999999999882 33211
Q ss_pred ceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCCCeEeec
Q 018278 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL---SDWMNWLKTEIGFDGWRFD 202 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l---~~~~~~w~~~~gvDGfR~D 202 (358)
|+... |.+. ... .......+.-.+++ ...++.+++.||-|.+=+|
T Consensus 153 ---------------W~~p~-------y~~~-~~~---------~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD 200 (384)
T smart00812 153 ---------------WFNPL-------YAGP-TSS---------DEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFD 200 (384)
T ss_pred ---------------hCCCc-------cccc-ccc---------ccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 11100 0000 000 00111234456777 8889999999999999999
Q ss_pred cCCCCCHH-----HHHHHHHhcCCCe---EEEecc
Q 018278 203 FVKGYAPS-----ITKVYMENTSPDF---AVGEKW 229 (358)
Q Consensus 203 ~a~~i~~~-----~~~~~~~~~~p~~---~~gE~~ 229 (358)
..-.-+.. -+.+++++..|.. ++.--|
T Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 201 GGWEAPDDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred CCCCCccchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 87433222 2333456666733 554443
No 115
>PLN03059 beta-galactosidase; Provisional
Probab=89.86 E-value=1.6 Score=45.39 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-..++|..+|++|+|+|..==++.. ....| . -.|.+..||.++++.|++.||.||+=.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~--------~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--N--------YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCCC--e--------eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 44567888899999999986433321 01111 1 223457899999999999999999864
No 116
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=89.82 E-value=0.85 Score=47.24 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEeccCCC
Q 018278 166 FQPAPDIDHL-----NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWDSL 232 (358)
Q Consensus 166 ~~~~~dln~~-----n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE~~~~~ 232 (358)
|.+..+|+|. +|.++++|+++...-.. =+||+|+|.++.-|...-+.++ ++.+| .|++||-+.++
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCC
Confidence 4567778885 47889999988876664 6899999999999887666664 45678 88999999874
No 117
>TIGR03356 BGL beta-galactosidase.
Probab=89.77 E-value=1.2 Score=43.25 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=46.2
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+.-..+-++-||+||++++-++=-+..--..|-. .+| -...+-++++|++|+++||++|+++.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~~n---~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----PVN---PKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----CcC---HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 457788899999999999999986433321111210 122 12356789999999999999999975
No 118
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=89.03 E-value=1.4 Score=38.77 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCchHHHH---hhh----hhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLK---NSI----PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~---~~L----~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
||||-.+. .++ ++.|+||+++|+|+- | +..+. .++..++|+.++++|++|+-.+
T Consensus 60 GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~--------G-----~~~i~------~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 60 GGTLFEIAHSKGKFDEYLNECDELGFEAVEISD--------G-----SMEIS------LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred CccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcC--------C-----ccCCC------HHHHHHHHHHHHhCCCeEeccc
Confidence 67775542 334 488999999999872 2 23344 6789999999999999999663
No 119
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=88.82 E-value=3.3 Score=37.43 Aligned_cols=140 Identities=16% Similarity=0.334 Sum_probs=76.6
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS---QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt---~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
+.+.++...||+-|+|++-+-= =.--+.-.|.-.| .+. ...++ .-|.+-+|++|+++||.+|.=+|.---..-
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~-Kdd~G~lty~s~d--~~~-~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~l 152 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDV-KDDYGELTYPSSD--EIN-KYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTIL 152 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEe-cCCCccEeccccc--hhh-hhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeeeE
Confidence 4556677888999999887531 0000122344443 122 22232 456788999999999999999886322111
Q ss_pred CCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ-GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
..+..-.-..+.+++ .|.. +.++. -.+..+..| .+-=++.+++|=+.+++.-++ +|+|-
T Consensus 153 ~~~n~fk~av~~~gK-----pw~~---------~~ngaLrKe~~~ehW-----Vd~y~~~~WeYNvtIAKEa~~-fGfdE 212 (400)
T COG1306 153 AKENPFKIAVYKDGK-----PWKA---------FTNGALRKESDGEHW-----VDAYDKNLWEYNVTIAKEAAK-FGFDE 212 (400)
T ss_pred EeecCceEEEEcCCC-----cchh---------hhcccccccccceee-----ecccchhhhhhhHHHHHHHHH-cCccc
Confidence 000000000111111 1211 00000 001111111 455678999999999999998 99999
Q ss_pred EeeccCCC
Q 018278 199 WRFDFVKG 206 (358)
Q Consensus 199 fR~D~a~~ 206 (358)
+.||-+..
T Consensus 213 iQFDYIRF 220 (400)
T COG1306 213 IQFDYIRF 220 (400)
T ss_pred eeeeEEEc
Confidence 99987643
No 120
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=87.92 E-value=1.1 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++++-+.|+++||+++-|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 467888889999999999999886
No 121
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=86.79 E-value=0.54 Score=43.73 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+-..++|..+|++|+|+|..-=++..- ...| ..||. ...|++++++.|+++||+||+-.=+
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~--------g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT--------GNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S--------GGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCC--ccccc--------chhhHHHHHHHHHHcCcEEEecccc
Confidence 344578888999999999975433210 0111 23322 2368999999999999999988544
No 122
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=86.07 E-value=1.9 Score=33.60 Aligned_cols=42 Identities=26% Similarity=0.586 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.+-++.+.++|+.++|+.|= ..+ +++++.|++.||+|+-
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g---------------~~~----------~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG---------------AES----------EELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT---------------S------------HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc---------------hHH----------HHHHHHHHHcCCEEEe
Confidence 45667788999999999999984 455 8999999999999874
No 123
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=85.71 E-value=3.3 Score=38.94 Aligned_cols=144 Identities=15% Similarity=0.055 Sum_probs=72.4
Q ss_pred hhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
+-++-+|++|...|-|+--+-. ..-|.-..++|..++ .. +..|=+++|+++|+++||++.+= -|.. +
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~-~krDiv~El~~A~rk~Glk~G~Y---~S~~-d------ 162 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SG-PKRDIVGELADACRKYGLKFGLY---YSPW-D------ 162 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GG-GTS-HHHHHHHHHHHTT-EEEEE---EESS-S------
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CC-CCCCHHHHHHHHHHHcCCeEEEE---ecch-H------
Confidence 4456789999999998742211 001111122322222 22 24688999999999999999982 2221 1
Q ss_pred ceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL-NPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
|+........ ..+... .++..-. ...+.++....++.++++|.+|.+=+|..
T Consensus 163 ---------------w~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~ 215 (346)
T PF01120_consen 163 ---------------WHHPDYPPDE--EGDENG----------PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGG 215 (346)
T ss_dssp ---------------CCCTTTTSSC--HCHHCC------------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEEST
T ss_pred ---------------hcCcccCCCc--cCCccc----------ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCC
Confidence 1110000000 000000 0000000 11255588889999999999999999998
Q ss_pred CCCC--H---HHHHHHHHhcCCCeEEEecc
Q 018278 205 KGYA--P---SITKVYMENTSPDFAVGEKW 229 (358)
Q Consensus 205 ~~i~--~---~~~~~~~~~~~p~~~~gE~~ 229 (358)
..-+ . .-+.+.+++..|-.++..-+
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 216 WPDPDEDWDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp TSCCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred CCccccccCHHHHHHHHHHhCCeEEEeccc
Confidence 6532 1 22333466667744444443
No 124
>PLN02950 4-alpha-glucanotransferase
Probab=85.40 E-value=2.8 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++++.+.|+++||+++.|+.+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 468889999999999999999885
No 125
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=84.12 E-value=28 Score=31.45 Aligned_cols=123 Identities=21% Similarity=0.340 Sum_probs=75.6
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~ 121 (358)
++-+-.++..|.+-+++.+-+=|- +...+ .+=.+.++++.+ .+.|.++|.=+-+.....-
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~-~~~~~~eelr~~----~~gg~~pIAYlsIg~ae~y-- 88 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPS-------------YCGPF-NTPWTIEELRTK----ADGGVKPIAYLSIGEAESY-- 88 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecc-------------ccCCC-CCcCcHHHHHHH----hcCCeeEEEEEechhhhhh--
Confidence 444556777777888888877662 11122 333467777755 6678889888877655321
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
+.| |+......+.+|-. ..++.| .+++ ...|..|+=++.+.+.++.+++ .|+||.-+
T Consensus 89 ---R~Y--wd~~w~~~~p~wLg----~edP~W---~Gny----------~VkYW~~eWkdii~~~l~rL~d-~GfdGvyL 145 (300)
T COG2342 89 ---RFY--WDKYWLTGRPDWLG----EEDPEW---PGNY----------AVKYWEPEWKDIIRSYLDRLID-QGFDGVYL 145 (300)
T ss_pred ---hhH--hhhhhhcCCccccc----CCCCCC---CCCc----------eeeccCHHHHHHHHHHHHHHHH-ccCceEEE
Confidence 111 22222222223321 111112 1111 2678889999999999999998 99999999
Q ss_pred ccCCCC
Q 018278 202 DFVKGY 207 (358)
Q Consensus 202 D~a~~i 207 (358)
|.+...
T Consensus 146 D~VD~y 151 (300)
T COG2342 146 DVVDAY 151 (300)
T ss_pred eeechH
Confidence 998765
No 126
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=83.15 E-value=2.6 Score=40.63 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=39.8
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG---SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G---t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.++.+.++|+.|+++|.|+=-+.+- .+... .+ |.+= ...=+.+.|+.|.++||+|++|+
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~------~~-p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QATDG------DN-PYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hccCC------CC-CCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 3566889999999999986332331 11100 33 3332 23356777999999999999996
No 127
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=83.11 E-value=3.6 Score=37.67 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=39.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCc--------cccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMP--------GRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~--------~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~V 107 (358)
+......-|+.+++-|||.|.+.=+-+.. ...|+.+ .|+..++ +.| -+.+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N-~~Y--F~~~d~~i~~a~~~Gi~~ 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN-PAY--FDHLDRRIEKANELGIEA 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT-----H--HHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC-HHH--HHHHHHHHHHHHHCCCeE
Confidence 34555666899999999999996544422 1123333 3445555 433 577899999999999988
Q ss_pred EEEeeccc
Q 018278 108 LADMVINH 115 (358)
Q Consensus 108 ilD~V~NH 115 (358)
++|+=|
T Consensus 105 --~lv~~w 110 (289)
T PF13204_consen 105 --ALVPFW 110 (289)
T ss_dssp --EEESS-
T ss_pred --EEEEEE
Confidence 577766
No 128
>PRK15447 putative protease; Provisional
Probab=82.59 E-value=5.1 Score=36.93 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=40.6
Q ss_pred eecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 30 FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 30 F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
|+|. .|+++.+. ..|++.|+++||+.- +..+ .- ..| +.+++++.|+.||++|.+|++
T Consensus 10 ~~~p-----~~~~~~~~---~~~~~~gaDaVY~g~--~~~~-----------~R-~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP-----KETVRDFY---QRAADSPVDIVYLGE--TVCS-----------KR-REL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC-----CCCHHHHH---HHHHcCCCCEEEECC--ccCC-----------Cc-cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 5575 56666554 457889999999972 1101 11 112 568999999999999999998
Q ss_pred E
Q 018278 110 D 110 (358)
Q Consensus 110 D 110 (358)
=
T Consensus 67 a 67 (301)
T PRK15447 67 S 67 (301)
T ss_pred E
Confidence 3
No 129
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=82.57 E-value=21 Score=32.08 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
.+.+.|+.++++|+++|+|.+-. .+-|. .+ .+..+.++|.+.+.+.||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~----~~~~~------~~----~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR----PHAFA------PD----LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC----ccccc------cc----cCchHHHHHHHHHHHcCCeEE
Confidence 47788999999999999984200 11111 11 134578889999999999984
No 130
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=82.42 E-value=5.7 Score=36.72 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
++++.|+.+++.+..+++++|.||+-+|--.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 4788899899988888888999999999743
No 131
>PRK01060 endonuclease IV; Provisional
Probab=82.13 E-value=16 Score=32.96 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=38.6
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~V 107 (358)
+.++.+.++.++++|+++|+|.+--+ +. .. +..-+.++++++.+.+.+.|+++
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p----~~--------~~-~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNP----QQ--------WK-RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC----CC--------Cc-CCCCCHHHHHHHHHHHHHcCCCC
Confidence 44577889999999999999965211 11 11 21237788899999999999985
No 132
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=81.73 E-value=24 Score=36.34 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHH-HHHHHHHH-HcCCEEEEEeecccccccC
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADL-KSLIQAFR-QKGIKCLADMVINHRTAER 120 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~-~~Lv~~~H-~~Gi~VilD~V~NH~~~~~ 120 (358)
+.|-.-++.++++|+++|+|-.+....++ |=.-. .|=++ .++==.+|+ -+..=.++ +.|++|..-+.+=-..-..
T Consensus 334 ~nl~~l~~ri~~~~~~~VyLqafadp~gd-g~~~~-lYFpn-r~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~ 410 (672)
T PRK14581 334 ENLDKLVQRISDLRVTHVFLQAFSDPKGD-GNIRQ-VYFPN-RWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP 410 (672)
T ss_pred hhHHHHHHHHHhcCCCEEEEEeeeCCCCC-Cceee-EEecC-CcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc
Confidence 34445577899999999999987665443 31111 12244 444444554 44435555 4599999998764221110
Q ss_pred CCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEe
Q 018278 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200 (358)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR 200 (358)
. .+. ...|..... .. ...-.....|.--+|++|+.|.+...-+...-.+||+=
T Consensus 411 ~------------~~~-~~~~~~~~~----~~----------~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gil 463 (672)
T PRK14581 411 S------------LPR-ITRIDPKTG----KT----------SIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGII 463 (672)
T ss_pred c------------cch-hhhcccccC----cc----------ccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 0 000 001100000 00 00001122377778999999999999999844899987
Q ss_pred ecc
Q 018278 201 FDF 203 (358)
Q Consensus 201 ~D~ 203 (358)
|.-
T Consensus 464 fhD 466 (672)
T PRK14581 464 YHD 466 (672)
T ss_pred ecc
Confidence 743
No 133
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.49 E-value=23 Score=31.89 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+.+.++.++++|+++|+|.+.- .+. ..... .+ +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~----~~~-----~~~~~--~~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE----SDE-----RLARL--DW-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC----ccc-----ccccc--cC-CHHHHHHHHHHHHHcCCCceE
Confidence 46688999999999999996421 110 00111 11 356789999999999999874
No 134
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=80.90 E-value=3 Score=39.08 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 177 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 177 ~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
++.+..+.+.+..+++.+|+||+=+|.=...
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4556677788888888899999999987766
No 135
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=80.51 E-value=3.6 Score=36.46 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=38.4
Q ss_pred CCchHHHH-------hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLK-------NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~-------~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
|||+-.+. +-+++.++|||++|+++ .| +..+. .++..++|+.+++.|++|+-.+
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiS--------dG-----ti~l~------~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEIS--------DG-----TIDLP------EEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE----------S-----SS---------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEec--------CC-----ceeCC------HHHHHHHHHHHHHCCCEEeecc
Confidence 67876653 44678899999999987 23 23344 6788999999999999999875
Q ss_pred e
Q 018278 112 V 112 (358)
Q Consensus 112 V 112 (358)
=
T Consensus 134 G 134 (244)
T PF02679_consen 134 G 134 (244)
T ss_dssp S
T ss_pred c
Confidence 3
No 136
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=79.43 E-value=11 Score=32.20 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
.+++.|+.+.+.+..+++++|+||+=+|--.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 4677888888888888888999999999744
No 137
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=77.29 E-value=9.3 Score=29.28 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=43.0
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~ 103 (358)
++-+-+|. .-.+ =.=+++..++..|++-|+++|+|..-......++ .- |. . .++++.+.++
T Consensus 37 ~~elvgf~-~CgG---Cpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~--~C-------P~---~---~~~~~~I~~~ 97 (107)
T PF08821_consen 37 DVELVGFF-TCGG---CPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG--PC-------PH---I---DEIKKIIEEK 97 (107)
T ss_pred CeEEEEEe-eCCC---CChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC--CC-------CC---H---HHHHHHHHHH
Confidence 46666663 3332 1246788889999999999999998776644443 11 22 3 3444455555
Q ss_pred -CCEEEE
Q 018278 104 -GIKCLA 109 (358)
Q Consensus 104 -Gi~Vil 109 (358)
|++||.
T Consensus 98 ~gi~VV~ 104 (107)
T PF08821_consen 98 FGIEVVE 104 (107)
T ss_pred hCCCEee
Confidence 998874
No 138
>PRK15452 putative protease; Provisional
Probab=77.19 E-value=24 Score=34.47 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=34.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
|+++.+..- -+.|.++||+..- .|...- -. ..| +.+++++.|+.||++|.+|.+
T Consensus 11 g~~e~l~aA----i~~GADaVY~G~~-------~~~~R~---~~-~~f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTLKNMRYA----FAYGADAVYAGQP-------RYSLRV---RN-NEF-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCHHHHHHH----HHCCCCEEEECCC-------ccchhh---hc-cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 555554433 3679999999532 111110 01 122 457899999999999999977
No 139
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=76.55 E-value=14 Score=35.82 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~-V~NH~~~ 118 (358)
|.+|..++|+-|+-|||+|+..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999998 7889876
No 140
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=76.15 E-value=7.9 Score=33.70 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcc--ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPG--RLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~--d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.|.+-.+.|+++|+..|.|.|.++.. -+.|.-. +|.--+ ..-=+.++++++.+.+.++|+++++
T Consensus 145 e~i~~ia~~l~~l~~~~~~llpyh~~g-~~Ky~~lg~~y~~~~-~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 145 ENMQQALDVLIPLGIKQIHLLPFHQYG-EPKYRLLGKTWSMKE-VPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCccc-hhHHHHcCCcCccCC-CCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 334444455556666667777655531 1111100 011011 1122578999999999999999864
No 141
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=75.82 E-value=5.2 Score=40.21 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=41.6
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
..++|...|++|+++|.--=++.. |- ...-. -.|...-||.++|+.||+.|+.|+|=+=+
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~---He-----p~~g~-y~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNL---HE-----PSPGK-YDFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeeccc---cc-----CCCCc-ccccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 346677789999999986443331 11 11111 33556778999999999999999997643
No 142
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=75.34 E-value=20 Score=32.19 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
++++-|+.+.+.+..+++++|+||+-+|-=...
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~ 124 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM 124 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC
Confidence 345556666677777777799999999975443
No 143
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=75.10 E-value=43 Score=29.97 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=36.8
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
++.+.++++.++|++.|+|.+.-+. .+. +..-+.++.+++.+.+.+.||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~----~~~---------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPR----SWK---------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCC----CCC---------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4667899999999999999653332 111 1112456678888888899999654
No 144
>PTZ00445 p36-lilke protein; Provisional
Probab=74.41 E-value=7.6 Score=33.63 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHhhhhhHHHcCCCEEEe---CCCCCCCCCCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWL---PPPSQSVAPQGYMPGRLYDLDASKYGS--QADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l---~Pi~~~~~~~gY~~~d~~~id~~~~Gt--~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+-...+.|+++||.+|-. +-+.. ..+.||.--+ +-+ .++++ ..+|+.+++++++.||+|++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~-~HsgG~~~~~--~~~-~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMIT-KHSGGYIDPD--NDD-IRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhh-hhcccccCCC--cch-hhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 33334467899999999975 11111 0234555443 334 44543 46699999999999999974
No 145
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.53 E-value=7.4 Score=36.06 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.++ ..+ |.+++.+.++.+|+.||+|..++.+..
T Consensus 147 ~in-Kg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 147 SIN-KGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred hhC-CCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 355 555 889999999999999999999999873
No 146
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.29 E-value=52 Score=29.68 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (358)
..+..+++|+.++++|++|.+-+.--+. +
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~---~------------------------------------------------ 135 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISG---Y------------------------------------------------ 135 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecC---C------------------------------------------------
Confidence 5788999999999999988766544211 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHhc
Q 018278 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (358)
Q Consensus 169 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~ 219 (358)
-.+++.+.++...+ .|+|.+++ |.+..+.++-..++++..
T Consensus 136 ----------~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 136 ----------SDEELLELLELVNE-IKPDVFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred ----------CHHHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 12557777777776 89999997 777777777777665543
No 147
>PLN02849 beta-glucosidase
Probab=73.01 E-value=7 Score=38.79 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=44.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
.+....+-++-+|+||+++--++=-+..--..|-. .+| + ...+=.++||++|+++||+.|+-+ .|.
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g-----~vN-~--~gl~fY~~lid~l~~~GI~P~VTL--~H~ 142 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRG-----SVN-P--KGLQFYKNFIQELVKHGIEPHVTL--FHY 142 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCC-----CCC-H--HHHHHHHHHHHHHHHcCCeEEEee--cCC
Confidence 45667788899999999998876433221111211 133 1 245668999999999999999765 455
No 148
>PRK05939 hypothetical protein; Provisional
Probab=72.66 E-value=13 Score=35.79 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=41.4
Q ss_pred hHHHcCCCEEEeCCCC-C---CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPS-Q---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~-~---~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++..|+..+++.+.- + ..-...-...-.-.+. ...|...|++++++.||++|+.||+|-+.
T Consensus 105 ~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~-NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIA-NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCC-CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3677899888876531 0 0001111122223455 67899999999999999999999999764
No 149
>PRK07094 biotin synthase; Provisional
Probab=72.07 E-value=7.6 Score=36.02 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
.+.++..+.++.+|+.||.|..++++.+-+..
T Consensus 162 ~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 162 MSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred CCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 67899999999999999999999999876543
No 150
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.91 E-value=62 Score=29.09 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+.+.++-++++|+++|+|.+-- .+. .+. +.--+.++++++.+.+.+.||+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~----~~~-------~~~-~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE----SDE-------RLA-RLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc----ccc-------chh-ccCCCHHHHHHHHHHHHHcCCceeE
Confidence 46678888999999999995311 111 012 1112567889999999999999863
No 151
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=70.47 E-value=5.5 Score=37.89 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=47.8
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.++++++...|..||.+||++|-+-= +.|..+..-|+ ..-+++|.+.+++.|+||..=+-+..
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd--------------Ws~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD--------------WSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB-----------------HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC--------------cHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 47899999999999999999998642 22332222232 44578999999999999999998888
Q ss_pred cccc
Q 018278 116 RTAE 119 (358)
Q Consensus 116 ~~~~ 119 (358)
++.+
T Consensus 78 cGgN 81 (402)
T PF01373_consen 78 CGGN 81 (402)
T ss_dssp BSSS
T ss_pred CCCC
Confidence 8764
No 152
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=70.38 E-value=9.4 Score=36.31 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
+-.+.++..+.++.+++.|+. |-+|++++.-+..
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 335788999999999999999 9999999876554
No 153
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=70.25 E-value=11 Score=37.28 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=43.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEeecccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVINHRTA 118 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi-~VilD~V~NH~~~ 118 (358)
++|..|++.|++.|.|.| ++ .+..-+-.+. |-.|.+++.+.++.|++.|+ .|-+|+.+..-+.
T Consensus 270 e~L~~Lk~~Gv~RISIGv--QS-----~~d~vLk~ig--R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 270 EKLEVLKKYGVDRISINP--QT-----MNDETLKAIG--RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred HHHHHHHhcCCCeEEEcC--Cc-----CCHHHHHHhC--CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 556777777777777665 11 1111122344 33689999999999999999 7889999986554
No 154
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=69.68 E-value=7.7 Score=38.57 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCeEeeccCCCC------C----------------HHHHHHHHHhcCC-CeEEEeccCC
Q 018278 184 SDWMNWLKTEIGFDGWRFDFVKGY------A----------------PSITKVYMENTSP-DFAVGEKWDS 231 (358)
Q Consensus 184 ~~~~~~w~~~~gvDGfR~D~a~~i------~----------------~~~~~~~~~~~~p-~~~~gE~~~~ 231 (358)
++-++.-++ .+|++|+|++..+ | .++++.+..+... ..+|||-...
T Consensus 295 ~~rlr~~~~--~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG~ 363 (513)
T TIGR00217 295 IKRLGANMQ--YADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLGT 363 (513)
T ss_pred HHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCCC
Confidence 334444443 7899999999875 1 2466665555444 6789998853
No 155
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=68.75 E-value=9.6 Score=37.05 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCEEE-EEeeccccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCL-ADMVINHRTAE 119 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~Vi-lD~V~NH~~~~ 119 (358)
+.++..+.|+.+++.|+.+| +|+.++.-+..
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 78899999999999999865 99998876543
No 156
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=68.62 E-value=92 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHhcC
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 220 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 220 (358)
+++.+.++...+ .|+|.+++ |.+..+.++...++++..+
T Consensus 149 ~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (275)
T cd07937 149 EYYVKLAKELED-MGADSICIKDMAGLLTPYAAYELVKALK 188 (275)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 557777777777 99999998 7777778877777765543
No 157
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=68.32 E-value=5.3 Score=36.61 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++++++.+-||++||+|.+|-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 37899999999999999999994
No 158
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=67.58 E-value=44 Score=30.86 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=58.8
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~ 121 (358)
.+.=.+.++.+++.|.|+=.--| -+..|.-..+..+- |. -..++|++||++|++.|++++.=+-+-..
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAP-----KdDpyhr~~Wre~Y-p~-~el~~l~~L~~~a~~~~V~Fv~aisPg~~----- 81 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAP-----KDDPYHRSKWREPY-PE-EELAELKELADAAKANGVDFVYAISPGLD----- 81 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-------TT-TTTTTTTTS----H-HHHHHHHHHHHHHHHTT-EEEEEEBGTTT-----
T ss_pred HHHHHHHHHHHHHcCCceEEECC-----CCChHHHhhhcccC-CH-HHHHHHHHHHHHHHHcCCEEEEEECcccc-----
Confidence 45555667788899998766555 22333332232222 10 14689999999999999998865433211
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
+++++++..+.|+.-+..+.+ .||+-|-+
T Consensus 82 --------------------------------------------------~~~s~~~d~~~L~~K~~ql~~-lGvr~Fai 110 (306)
T PF07555_consen 82 --------------------------------------------------ICYSSEEDFEALKAKFDQLYD-LGVRSFAI 110 (306)
T ss_dssp ----------------------------------------------------TSHHHHHHHHHHHHHHHHC-TT--EEEE
T ss_pred --------------------------------------------------cccCcHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 345567888889998888887 99997765
Q ss_pred --ccCC
Q 018278 202 --DFVK 205 (358)
Q Consensus 202 --D~a~ 205 (358)
|-+.
T Consensus 111 lfDDi~ 116 (306)
T PF07555_consen 111 LFDDID 116 (306)
T ss_dssp E-TS-S
T ss_pred eecCCC
Confidence 5555
No 159
>PRK05967 cystathionine beta-lyase; Provisional
Probab=66.77 E-value=21 Score=34.28 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=42.7
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++..|+...++.|-.. ..-...-...-.-.+. ...++..|++++++.||++|+.||+|-++.
T Consensus 123 ~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPs-NP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 123 MLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPG-SNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCC-CCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 45778998888754210 0001112223234455 557899999999999999999999998874
No 160
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=66.41 E-value=13 Score=35.22 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
|-.+.++..+.++.+++.|+. |-+|+.+...+..
T Consensus 131 R~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 131 RQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 446789999999999999996 7899999876554
No 161
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=66.36 E-value=83 Score=29.47 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=39.5
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
..++.....++=|+..|-.-...-++...++... -.+... -..+.+++|++++|++|-++++= ++|.|...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~--~~i~~d--~~i~~~k~l~~~vh~~Ga~i~~Q--L~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQ--PGIWDD--EQIPGLKKLADAVHAHGAKIIAQ--LWHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTS--EBSSSH--HHHHHHHHHHHHHHHTTSEEEEE--EE--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccccc--chhchh--hHHHHHHHHHHHHHhcCccceee--cccccccc
Confidence 3444444455657776665444333322222111 011101 13678999999999999999976 57888764
No 162
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=65.89 E-value=76 Score=28.90 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=38.6
Q ss_pred hhhh-hHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC-CCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 47 NSIP-DLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 47 ~~L~-yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id-~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
.+|. |-++-.++.|-|.=+...+. .|+-..++-... ...++.-.++.+-|+.|+++|+||+|=
T Consensus 14 ~~L~~~C~~~~~dii~i~Fl~~~~~-~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 14 GSLREYCDTGNYDIVNISFLNVFGS-GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred CCHHHHhCCCCccEEEEEeEcccCC-CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 4444 33455688887765544433 444334433322 011224568999999999999999995
No 163
>PRK06256 biotin synthase; Validated
Probab=65.89 E-value=10 Score=35.36 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=38.5
Q ss_pred hhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 48 ~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+..|++.|++.|.+.. ++ + ..-|-.+. +. .+.++..+.++.+|+.||+|...+++.+
T Consensus 154 ~l~~LkeaG~~~v~~~l--Et-s-----~~~~~~i~-~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 154 QAERLKEAGVDRYNHNL--ET-S-----RSYFPNVV-TT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHhCCCEEecCC--cc-C-----HHHHhhcC-CC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 34455555665555431 22 1 11133455 43 3789999999999999999999999976
No 164
>PLN02803 beta-amylase
Probab=65.75 E-value=21 Score=35.26 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=50.0
Q ss_pred Cch---HHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 40 GWY---NSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 40 G~~---~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
|.+ ++|...|..||.+||++|-+-= |.|..+..-|+ ..-+++|++.+++.|+||..=+-+
T Consensus 101 ~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd--------------WsgY~~l~~mvr~~GLKlq~vmSF 166 (548)
T PLN02803 101 GNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN--------------WEGYAELVQMVQKHGLKLQVVMSF 166 (548)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEe
Confidence 456 8899999999999999997642 23333333333 445688999999999999999999
Q ss_pred cccccc
Q 018278 114 NHRTAE 119 (358)
Q Consensus 114 NH~~~~ 119 (358)
..+|.+
T Consensus 167 HqCGGN 172 (548)
T PLN02803 167 HQCGGN 172 (548)
T ss_pred cccCCC
Confidence 888775
No 165
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=64.81 E-value=6.4 Score=37.05 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
|.+-|+++++.||+.||-||.|-|+.|+--..
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 57899999999999999999999999997654
No 166
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=64.69 E-value=14 Score=34.79 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=41.3
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~ 118 (358)
++|+.++++|++.|.|.. .. .+..-.-.++ |-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 104 e~l~~lk~~G~nrisiGv-QS------~~d~vL~~l~--R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 104 SQINLLKKNKVNRISLGV-QS------MNNNILKQLN--RTHTIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHcCCCEEEEec-cc------CCHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 455666666666665542 11 1111122333 345789999999999999997 999999987654
No 167
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=64.20 E-value=19 Score=32.79 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=38.2
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.+..||+.|++.|.+. .+. ++.-|-.+. +. .+.++..+.++.+|+.||+|...+++.+
T Consensus 124 e~l~~Lk~aG~~~v~i~--~E~------~~~~~~~i~-~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHN--LDT------SQEFYSNII-ST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHcCCCEEEEc--ccC------CHHHHhhcc-CC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 34555555666655554 111 111122344 43 4789999999999999999999988876
No 168
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=63.71 E-value=33 Score=31.05 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+.+++.+-|+.|+++||+|..=+.++
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~G 191 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLING 191 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeC
Confidence 46788999999999999998655543
No 169
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.47 E-value=1.2e+02 Score=27.26 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK-GIKCLA 109 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~-Gi~Vil 109 (358)
..+.+.++.++++|++.|+|..-.. +++ .. +.. +.++++++.+.+.++ |+.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~----~~~-------~~-~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNP----RSW-------LS-RPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCC----Ccc-------CC-CCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 4566889999999999999975111 111 12 222 568889999999898 777664
No 170
>PRK05660 HemN family oxidoreductase; Provisional
Probab=62.41 E-value=17 Score=34.59 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=43.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE-EEEeeccccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC-LADMVINHRTAE 119 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~V-ilD~V~NH~~~~ 119 (358)
++|..|+++||+.|.|.. ...+..-+..+. +-.+.++..+-++.+++.|++. -+|+.+...+..
T Consensus 108 e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~--r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG--RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC--CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 556666777777776653 112222233444 3468899999999999999975 599998876643
No 171
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=62.10 E-value=8.7 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
.++-+..|++.+-+...++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 77888999999999999999999998
No 172
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=61.23 E-value=1.4e+02 Score=28.28 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
..+.+++|++++|++|-++++=+ +|.|...
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL--~H~G~~~ 110 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIEL--WHGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEec--ccCCCCC
Confidence 36889999999999999998765 4887653
No 173
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.08 E-value=1.5e+02 Score=27.95 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-.+.+++|++++|++|-+++ +-++|.|...
T Consensus 76 ~i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 76 DIPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hhHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 36889999999999999988 6789988753
No 174
>PLN02801 beta-amylase
Probab=60.93 E-value=27 Score=34.30 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=49.2
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+-+++...|..||.+||++|-+-= +.|..+..-|+ ...+++|++.+++.|+||..=+-++.+|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd--------------WsgY~~l~~mvr~~GLKlq~vmSFHqCG 100 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD--------------WSAYRSLFELVQSFGLKIQAIMSFHQCG 100 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC--------------cHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 457889999999999999998642 23332323333 4456889999999999999999998877
Q ss_pred cc
Q 018278 118 AE 119 (358)
Q Consensus 118 ~~ 119 (358)
.+
T Consensus 101 GN 102 (517)
T PLN02801 101 GN 102 (517)
T ss_pred CC
Confidence 75
No 175
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=60.88 E-value=15 Score=36.56 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=47.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
++|+.|+++|++.|+|.. ... ++-. ...++ |--|.++..+.++.+++.|++|.+|+.++--+.
T Consensus 207 e~L~~L~~~G~~rVslGV-QS~-----~d~V-L~~in--Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgq 269 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-QTI-----YNDI-LERTK--RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGS 269 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-ccC-----CHHH-HHHhC--CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCC
Confidence 779999999999999974 111 1111 22334 334788899999999999999999999986654
No 176
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=60.43 E-value=1.4e+02 Score=27.55 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=52.5
Q ss_pred CceEEEeeecCCCCC----------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHH
Q 018278 23 PALLFQGFNWESSNK----------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~----------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d 92 (358)
...||-.|--+..+. ..=.+..+.+.+..+.++||++|-|-|+-+..+..|-... +.+ .-
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~---~~~-------g~ 100 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHHKDAKGSDTW---DDN-------GL 100 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCccccc---CCC-------Ch
Confidence 367777884322211 1234678889999999999999999998443322221111 112 22
Q ss_pred HHHHHHHHHHc--CCEEEEEeecccc
Q 018278 93 LKSLIQAFRQK--GIKCLADMVINHR 116 (358)
Q Consensus 93 ~~~Lv~~~H~~--Gi~VilD~V~NH~ 116 (358)
.++-|+++++. .|-||.|+-+-..
T Consensus 101 v~~air~iK~~~pdl~vi~DVcLc~Y 126 (322)
T PRK13384 101 LARMVRTIKAAVPEMMVIPDICFCEY 126 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeeeecccC
Confidence 35556666665 8999999987543
No 177
>PRK12677 xylose isomerase; Provisional
Probab=60.28 E-value=1.5e+02 Score=28.41 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=34.5
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-t~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+.+.++.++++|+.+|.+..- ++. -.+ .... .....+++.+.+.+.||+|..
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~---------~l~---p~~-~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDD---------DLV---PFG-ATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred CHHHHHHHHHHhCCCEEEeccc---------ccC---CCC-CChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 5788999999999999998320 010 011 1111 123477888888899999653
No 178
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=60.01 E-value=21 Score=35.00 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
+-.+.++..+.++.+++.|+. |-+|+.+..-+..
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 347899999999999999997 8899998866543
No 179
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=59.49 E-value=22 Score=35.02 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++..+.++.||+.||.|..++++..-+
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPG 349 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCC
Confidence 67889999999999999999999987544
No 180
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=59.28 E-value=28 Score=32.84 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=57.5
Q ss_pred hhhhhhcCCCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----CCCCCCccccCCCCCCC
Q 018278 11 SFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----APQGYMPGRLYDLDASK 86 (358)
Q Consensus 11 ~~~~~~~~~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~ 86 (358)
++...+...-..+.++-.+.-. ||++.-+..- ||.+||++.++-|.-+.. =...=...-.-.|. ..
T Consensus 90 ~~~ai~~la~aGD~iVss~~LY------GGT~~lf~~t---l~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~Etig-NP 159 (426)
T COG2873 90 ITYAILNLAGAGDNIVSSSKLY------GGTYNLFSHT---LKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIG-NP 159 (426)
T ss_pred HHHHHHHhccCCCeeEeecccc------CchHHHHHHH---HHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEecc-CC
Confidence 3444445556677777766542 6776544433 699999999997754210 00000001112233 33
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 87 ~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
=++.-|++++.+-||++|+-+|+| |.++.
T Consensus 160 ~~~v~Die~ia~iAh~~gvpliVD---NT~at 188 (426)
T COG2873 160 GLDVLDIEAIAEIAHRHGVPLIVD---NTFAT 188 (426)
T ss_pred CccccCHHHHHHHHHHcCCcEEEe---cCCCc
Confidence 355667899999999999999999 54443
No 181
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=58.65 E-value=21 Score=32.23 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
..+.+.|+.++++|+++|+|.+- .. . ..++ +.--+.++.+++.+.+.++||+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~--~--------~~~~-~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ET--D--------DRLS-RLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cc--c--------chhh-ccCCCHHHHHHHHHHHHHcCCCce
Confidence 45778899999999999999531 11 0 1122 111246788999999999999985
No 182
>PLN02905 beta-amylase
Probab=58.51 E-value=32 Score=34.73 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=50.2
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-+.++|...|..||.+||++|-+-= |.|..+..-|+ ..-+++|++.+++.|+||..=+-+..+
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd--------------WsgY~~L~~mvr~~GLKlqvVMSFHqC 348 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN--------------WNGYKRLFQMVRELKLKLQVVMSFHEC 348 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 4678899999999999999998642 22332222332 445688999999999999999999888
Q ss_pred ccc
Q 018278 117 TAE 119 (358)
Q Consensus 117 ~~~ 119 (358)
|.+
T Consensus 349 GGN 351 (702)
T PLN02905 349 GGN 351 (702)
T ss_pred CCC
Confidence 775
No 183
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=58.23 E-value=26 Score=32.94 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~ 118 (358)
|-.+.++..+.++.+++.|+. |-+|+.++..+.
T Consensus 129 R~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 129 RIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 345789999999999999996 669999987654
No 184
>PLN02161 beta-amylase
Probab=58.03 E-value=35 Score=33.58 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=49.5
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-+.+.+...|..||.+||++|-+-= +.|..+..-|+ ..-+++|++.+++.|+||..=+-++.+
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd--------------WsgY~~l~~mvr~~GLKlq~vmSFHqC 179 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK--------------WSLYEELFRLISEAGLKLHVALCFHSN 179 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 4677889999999999999998642 23332333333 445688999999999999999988876
Q ss_pred ccc
Q 018278 117 TAE 119 (358)
Q Consensus 117 ~~~ 119 (358)
+.+
T Consensus 180 GGN 182 (531)
T PLN02161 180 MHL 182 (531)
T ss_pred CCC
Confidence 654
No 185
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=57.49 E-value=22 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 87 YGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 87 ~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
-.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 183 IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 36789999999999999996 7799988876553
No 186
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=57.41 E-value=9.9 Score=36.64 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC----------CCCCCccccCCCCCCCCC
Q 018278 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA----------PQGYMPGRLYDLDASKYG 88 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~----------~~gY~~~d~~~id~~~~G 88 (358)
.+.+++|++-..+.+++ +.-....-++.|+...|+..- +... +..=...-+..+- ...|
T Consensus 108 ~~~gdeIv~s~~EH~sn---------~~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vS-n~tG 176 (405)
T COG0520 108 LKPGDEIVVSDLEHHSN---------IVPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVS-NVTG 176 (405)
T ss_pred hcCCCEEEEccCcchhh---------HHHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECcc-cccc
Confidence 45566777776653322 222333344568887777653 3211 0111223344555 7889
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee--cccccccCCCCCcceeeccC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMV--INHRTAERKDGRGIYCIFEG 132 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V--~NH~~~~~~~~~~~~~~~~~ 132 (358)
+..+++++++.||++|..|++|.+ .-|.-.+-....-+++.|.+
T Consensus 177 ~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsg 222 (405)
T COG0520 177 TVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSG 222 (405)
T ss_pred ccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcc
Confidence 999999999999999999999986 33443332222334555544
No 187
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.38 E-value=1.8e+02 Score=27.76 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc-ccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHR-TAE 119 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~-~~~ 119 (358)
.+.||+|++++|++|-++++ -++|. |..
T Consensus 82 i~~~k~l~davh~~G~~i~~--QL~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFL--QLTAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEE--EccCcCCCc
Confidence 56899999999999999984 45786 554
No 188
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=56.70 E-value=18 Score=34.12 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCEEEEEee
Q 018278 93 LKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V 112 (358)
..++|++||++|++|+.-=|
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTv 299 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTL 299 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEe
Confidence 47899999999999987644
No 189
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=55.50 E-value=44 Score=33.30 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=49.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCC-CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
|.+.|.+.++..|+.||--..|==-+. ...+.-=+.-|++.-. .+|++ .+..||++.|++|+..=+-+-+--++.+
T Consensus 307 t~e~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~s-eKfPs--giE~li~~I~e~Gl~fGIWlePemvs~d 383 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNS-EKFPS--GIEELIEAIAENGLIFGIWLEPEMVSED 383 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecch-hhccc--cHHHHHHHHHHcCCccceeecchhcccc
Confidence 578899999999999976655522111 1111112233444333 44543 3677899999999999888887766665
Q ss_pred C
Q 018278 120 R 120 (358)
Q Consensus 120 ~ 120 (358)
+
T Consensus 384 S 384 (687)
T COG3345 384 S 384 (687)
T ss_pred h
Confidence 4
No 190
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=55.33 E-value=25 Score=33.48 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
+-.+.++..+.|+.+++.|+. |-+|+.++.-+..
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 345789999999999999998 6789998876654
No 191
>PLN00197 beta-amylase; Provisional
Probab=55.25 E-value=38 Score=33.60 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=48.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+-+++...|..||.+||+.|-+-= |.|..+..-|+ ..-+++|++.+++.|+||..=+-+..+|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd--------------WsgY~~L~~mvr~~GLKlq~VmSFHqCG 190 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN--------------WGGYNELLEMAKRHGLKVQAVMSFHQCG 190 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 456788999999999999997642 23332333332 4456889999999999999999998877
Q ss_pred cc
Q 018278 118 AE 119 (358)
Q Consensus 118 ~~ 119 (358)
.+
T Consensus 191 GN 192 (573)
T PLN00197 191 GN 192 (573)
T ss_pred CC
Confidence 75
No 192
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=55.22 E-value=29 Score=34.00 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC-EEEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGI-KCLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi-~VilD~V~NH~~~~ 119 (358)
+-.+.++..+.++.+++.|+ .|-+|+.++..+..
T Consensus 182 r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 182 RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 34688999999999999999 89999998876654
No 193
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=54.72 E-value=33 Score=31.63 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=47.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
=|.+.+++.|+.|+++|++.|-+.+-+.. +...+-+ .+|=++++|+.+-+.|-+.|.+-+.-
T Consensus 219 ETeee~~etl~~Lrelg~d~v~igqYl~p-~~~~~~v--------~~~~~p~~f~~~~~~a~~~gf~~v~~ 280 (302)
T TIGR00510 219 ETNEEIKQTLKDLRDHGVTMVTLGQYLRP-SRRHLPV--------KRYVSPEEFDYYRSVALEMGFLHAAC 280 (302)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeecccCC-CCCCCcc--------ccCCCHHHHHHHHHHHHHcCChheEe
Confidence 47889999999999999999998876654 2233333 35666779999999999999876554
No 194
>PLN02389 biotin synthase
Probab=54.22 E-value=42 Score=32.07 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.++-.+.++.||+.||+|..=+++.|
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 789999999999999999999999998
No 195
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=54.08 E-value=16 Score=28.79 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=42.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC---------CCCcccc--CCCCCCCCCCHHHHHHHHHHHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---------GYMPGRL--YDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~---------gY~~~d~--~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
....+.+-|+.|.+.|++.|.+.|.+-.++-+ .|. ..+ ..+.+|-+.+.+|++++++++++
T Consensus 54 ~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 54 EVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 35677888999999999999999998776422 122 111 12333556678899999888765
No 196
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=53.74 E-value=29 Score=30.78 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
++++++++.|+++||+.++=+.++-
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5889999999999999998776653
No 197
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=53.30 E-value=2e+02 Score=27.00 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=41.9
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
+++......+=|+..|..-.++-++...++ +.. ..+. .. .-.+.+++|++++|++|-++++ -++|.|...
T Consensus 35 ~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~~-~~l~-~d-~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 35 YIAYHEERARGGAGLIITEGSSVHPSDSPA-FGN-LNAS-DD-EIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CCc-cccC-CH-HHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 334444445567888876555544433332 111 1111 00 1256899999999999999888 678887653
No 198
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=53.26 E-value=25 Score=36.08 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
..+.++|.-.|.+|+++|.+..+.=+.. ..| ..||...| .. +++.|++.|++||+==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG--~fdf~~~D---------~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG--KFDFTWLD---------EI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcccc--ccCcccch---------HH-HHHHHHhcCceEEEecCC
Confidence 6677889999999999999977543211 112 22233344 33 899999999999997544
No 199
>PRK12928 lipoyl synthase; Provisional
Probab=53.00 E-value=50 Score=30.24 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=48.6
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
=|.+.+.+.|+.|+++|++.|.+.|....... +..| .+|=++++|+++-+.+.+.|.+-|.--
T Consensus 216 ET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~-------~~~v--~~~~~~~~f~~~~~~~~~~g~~~~~~~ 278 (290)
T PRK12928 216 ETEDEVIETLRDLRAVGCDRLTIGQYLRPSLA-------HLPV--QRYWTPEEFEALGQIARELGFSHVRSG 278 (290)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc-------CCce--eeccCHHHHHHHHHHHHHcCCceeEec
Confidence 47899999999999999999998875543221 2223 477788899999999999998766543
No 200
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=52.20 E-value=12 Score=34.15 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 87 YGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 87 ~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.|...+++++++.||++|+.|++|-+
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECc
Confidence 68888999999999999999999987
No 201
>PRK09028 cystathionine beta-lyase; Provisional
Probab=51.70 E-value=21 Score=34.29 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=40.4
Q ss_pred hHHHcCCCEEEeCCCCCC----CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 51 DLSNAGITHVWLPPPSQS----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~----~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++..|+...++.|--+. --...-...-.-.+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 120 ~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lesps-NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 120 ILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPG-SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred hhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 446788887776542100 000111122223455 556889999999999999999999997764
No 202
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.65 E-value=60 Score=30.03 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=36.7
Q ss_pred HHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 53 SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 53 ~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
.+=|+.-|..-...-++...+|... -.+. .. ...+.+|++++++|+.|-++++ -++|.|...
T Consensus 43 a~gg~glii~e~~~v~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~vh~~g~~~~~--Ql~h~G~~~ 104 (327)
T cd02803 43 AKGGVGLIITEAAYVDPEGKGYPGQ--LGIY-DD-EQIPGLRKLTEAVHAHGAKIFA--QLAHAGRQA 104 (327)
T ss_pred hCcCCcEEEECcEEEcCcccCCCCC--cCcC-CH-HHHHHHHHHHHHHHhCCCHhhH--HhhCCCcCC
Confidence 3346777766554444333222110 0011 00 1368899999999999999875 468887754
No 203
>PLN02705 beta-amylase
Probab=51.58 E-value=43 Score=33.70 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=48.7
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+-++|...|..||.+||+.|-+-= |.|..+..-|+ ..-+++|++.+++.|+||..=+-+..+|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd--------------WsgY~~L~~mvr~~GLKlqvVmSFHqCG 331 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV--------------WSGYRELFNIIREFKLKLQVVMAFHEYG 331 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEeeccC
Confidence 457889999999999999998642 22332222232 4457889999999999999999988777
Q ss_pred cc
Q 018278 118 AE 119 (358)
Q Consensus 118 ~~ 119 (358)
.+
T Consensus 332 GN 333 (681)
T PLN02705 332 GN 333 (681)
T ss_pred CC
Confidence 75
No 204
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=51.53 E-value=47 Score=27.76 Aligned_cols=59 Identities=7% Similarity=-0.051 Sum_probs=40.0
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH---HcCCEEEEEeecccc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR---QKGIKCLADMVINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H---~~Gi~VilD~V~NH~ 116 (358)
.+...+..++.+++|+++|-+.|++- +..+ . +.+.+.+.++++. +.++-|++...+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~------------~~~~-~---~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG------------SLKE-G---DWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH------------HHhC-C---CHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 78899999999999999999987541 1111 1 2344444444443 459999998876654
No 205
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=51.38 E-value=49 Score=29.44 Aligned_cols=64 Identities=13% Similarity=0.004 Sum_probs=37.3
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCC--------CCCCCCcc-------ccC------CCCCCCC--CCHHHHHHHHHHHH
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPG-------RLY------DLDASKY--GSQADLKSLIQAFR 101 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~--------~~~gY~~~-------d~~------~id~~~~--Gt~~d~~~Lv~~~H 101 (358)
+.+.++.++++|+++|+|....... ..+|-.+. ++. ..+ +.- -..+.+++.|+.|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~a~ 95 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACI-PGREEEFRDGVAAAIRYAR 95 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccC-CCcHHHHHHHHHHHHHHHH
Confidence 5677899999999999986533211 01232222 110 011 110 01355888888888
Q ss_pred HcCCEEEE
Q 018278 102 QKGIKCLA 109 (358)
Q Consensus 102 ~~Gi~Vil 109 (358)
+.|.++|.
T Consensus 96 ~lga~~i~ 103 (258)
T PRK09997 96 ALGNKKIN 103 (258)
T ss_pred HhCCCEEE
Confidence 88888763
No 206
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=51.37 E-value=28 Score=33.49 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
|--|.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 146 R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 146 RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 334788999999999999998 8899999876643
No 207
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=50.67 E-value=27 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCEEEEEeecc
Q 018278 94 KSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD~V~N 114 (358)
...|++||++|++|+-=+.+.
T Consensus 45 ~~widaAHrnGV~vLGTiife 65 (311)
T PF03644_consen 45 AGWIDAAHRNGVKVLGTIIFE 65 (311)
T ss_dssp HHHHHHHHHTT--EEEEEEEE
T ss_pred chhHHHHHhcCceEEEEEEec
Confidence 568999999999999887773
No 208
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=50.32 E-value=22 Score=29.05 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=40.3
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.||.-..+-.+-|+++||..- + .|= +.--|++.+.+.+++++++|++||+=.
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye---------------~----~Vv-SAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYE---------------V----RVV-SAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeE---------------E----EEE-eccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 568888888889999988432 1 133 444578899999999999999999853
No 209
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=50.09 E-value=15 Score=32.43 Aligned_cols=25 Identities=8% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5789999999999999999996664
No 210
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.07 E-value=49 Score=29.31 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+.++.+++++.||++||++++=+-++
T Consensus 114 ~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 114 YPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45788999999999999999966553
No 211
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=49.46 E-value=38 Score=32.14 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=41.3
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
+.|+.|+++|++.|.|.. ++.++ .-.-.++ +-.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 100 e~l~~l~~~G~~rvsiGv--qS~~d-----~~L~~l~--R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL--QAWQN-----SLLKYLG--RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred HHHHHHHHcCCCEEEEEC--ccCCH-----HHHHHcC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 456666666766666553 22111 1112233 334788999999999999997 7799998866553
No 212
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.29 E-value=2e+02 Score=25.78 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=41.7
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
.++..+..-++||++-|..-|.|.- ++..+|....-..+| ++.+...-+.-++-||+|.- |++.
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e----Rg~~~Y~~~~~n~~d---------l~ai~~lk~~~~lPVivd~S--Hs~G 196 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE----RGVRGYDVETRNMLD---------IMAVPIIQQKTDLPIIVDVS--HSTG 196 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc----cccCCCCCccccccC---------HHHHHHHHHHhCCCeEECCC--CCCc
Confidence 5788888999999999988787762 233556543222455 33333333346899999977 7643
No 213
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=49.00 E-value=35 Score=33.65 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=45.5
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+....+-++.+++||+++.-++--+..--..|... .++ -...+=.++||++|+++||++|+.+.
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~----~~n---~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEL----TPN---QQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCC----CCC---HHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 3477778889999999999999875443211112100 112 12356689999999999999998864
No 214
>PRK08114 cystathionine beta-lyase; Provisional
Probab=48.95 E-value=40 Score=32.40 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=42.5
Q ss_pred hhHHHcCCCEEEeCCCCCC----CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC--CEEEEEeec
Q 018278 50 PDLSNAGITHVWLPPPSQS----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG--IKCLADMVI 113 (358)
Q Consensus 50 ~yl~~LGv~~I~l~Pi~~~----~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~G--i~VilD~V~ 113 (358)
..+++.||+..++.|.-.. .-...-...-.-.+- ...|...|++++++.||++| +.||+|-+.
T Consensus 120 ~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~Etps-Np~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPG-SITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 4678899999998763110 001112233334455 66788899999999999985 999999654
No 215
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=48.28 E-value=24 Score=32.68 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.+++.|+.+++.+..+++++|+||+-+|-=
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 468889999999988888899999999953
No 216
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=48.24 E-value=56 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=17.1
Q ss_pred HHHhhhhhHHHcCCCEEEeCCC
Q 018278 44 SLKNSIPDLSNAGITHVWLPPP 65 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi 65 (358)
.+.+.++-++++|++.|+|...
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~ 36 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFP 36 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCC
Confidence 4667777888999999999643
No 217
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=47.79 E-value=1.2e+02 Score=28.40 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHhc----CCCeEEEeccCC
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT----SPDFAVGEKWDS 231 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~----~p~~~~gE~~~~ 231 (358)
+++.+.++...+ +|+|.+++ |.+..+.++...++++.. +|..-+|=+.++
T Consensus 144 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 144 EKLAEQAKLMES-YGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHHHHHHh-CCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 667777887776 99999995 888888887776664432 233445545443
No 218
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=47.70 E-value=1.2e+02 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |++....++-..++++.
T Consensus 143 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~ 180 (268)
T cd07940 143 DFLIEVVEAAIE-AGATTINIPDTVGYLTPEEFGELIKK 180 (268)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 567778888877 99999998 66677777766666544
No 219
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=47.47 E-value=43 Score=31.77 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=42.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTAE 119 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~NH~~~~ 119 (358)
++|+.++++||+.|.|.. ... + ..-.-.++ |--+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 104 ~~l~~l~~~G~nrislGv-QS~-~-----~~~L~~l~--R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 104 SYIRALALTGINRISIGV-QTF-D-----DPLLKLLG--RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHCCCCEEEEcc-ccC-C-----HHHHHHcC--CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 556777777777776652 111 1 11122233 223678888999999999996 8899999876653
No 220
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=47.45 E-value=4.1 Score=32.42 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=34.4
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.-.|+-++++|++.+.++|+.... .+-|+....+... .+.+-..|.+.|+ =|+|+
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~----------y~kI~~~~~~~gf-~v~D~ 95 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEY----------YKKIKYQLKSQGF-NVADF 95 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHH----------HHHHHHHHHTTT---EEE-
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHH----------HHHHHHHHHHCCC-EEEec
Confidence 7888888999999999999999877652 2334333322222 3666677889999 55664
No 221
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=47.38 E-value=54 Score=27.99 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=43.3
Q ss_pred hhhHHHcCCCEEEeCCCCCC---------------CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 49 IPDLSNAGITHVWLPPPSQS---------------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 49 L~yl~~LGv~~I~l~Pi~~~---------------~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
|..+-.-|=.+|---|=|-. ...-.|.-.| +++ -++-|..||++|++ ++||+|+--+++
T Consensus 95 L~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd--TPN-ih~~Ti~DFe~lc~---~~~i~I~~~~~~ 168 (193)
T PF07021_consen 95 LEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD--TPN-IHLCTIKDFEDLCR---ELGIRIEERVFL 168 (193)
T ss_pred HHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC--CCC-cccccHHHHHHHHH---HCCCEEEEEEEE
Confidence 45555566677766663321 0122455544 677 88999999999965 679999999998
Q ss_pred ccccc
Q 018278 114 NHRTA 118 (358)
Q Consensus 114 NH~~~ 118 (358)
+.-..
T Consensus 169 ~~~~~ 173 (193)
T PF07021_consen 169 DGGRR 173 (193)
T ss_pred cCCCC
Confidence 86653
No 222
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=47.34 E-value=13 Score=20.21 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.7
Q ss_pred hHHHHhhhhhHHHcCCC
Q 018278 42 YNSLKNSIPDLSNAGIT 58 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~ 58 (358)
-+.|..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 57788899999999984
No 223
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=47.28 E-value=24 Score=32.66 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeecc
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (358)
++++.|+.+++.+..+++++|.||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 57889999999988888889999999993
No 224
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=47.28 E-value=28 Score=31.16 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=44.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC--------ccccCCCCCCCC--------CCHHHHHHHHHHHHHc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM--------PGRLYDLDASKY--------GSQADLKSLIQAFRQK 103 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~--------~~d~~~id~~~~--------Gt~~d~~~Lv~~~H~~ 103 (358)
.+...+.+.+..|+++||.. .| ..-.-||+ +.|+-.|| ..| ....=++.+|+-||+.
T Consensus 133 ~~~~~~~~~l~~L~~~G~~i-al-----DDFGtG~ssl~~L~~l~~d~iKID-~~fi~~i~~~~~~~~iv~~iv~la~~l 205 (256)
T COG2200 133 DDLDTALALLRQLRELGVRI-AL-----DDFGTGYSSLSYLKRLPPDILKID-RSFVRDLETDARDQAIVRAIVALAHKL 205 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeE-EE-----ECCCCCHHHHHHHhhCCCCeEEEC-HHHHhhcccCcchHHHHHHHHHHHHHC
Confidence 34666777888999999742 22 11133444 34455555 333 2345699999999999
Q ss_pred CCEEEEEeecc
Q 018278 104 GIKCLADMVIN 114 (358)
Q Consensus 104 Gi~VilD~V~N 114 (358)
|++||..-|=+
T Consensus 206 ~~~vvaEGVEt 216 (256)
T COG2200 206 GLTVVAEGVET 216 (256)
T ss_pred CCEEEEeecCC
Confidence 99999987743
No 225
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=47.16 E-value=1.3e+02 Score=28.25 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh----cCCCeEEEeccCC
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN----TSPDFAVGEKWDS 231 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~----~~p~~~~gE~~~~ 231 (358)
+++.+.++...+ +|+|.+++ |.+..+.++-.+++++. ..|..-+|=+.++
T Consensus 143 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 143 EKLAEQAKLMES-YGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 568888887766 99999987 77777777766666443 2333445545443
No 226
>TIGR03586 PseI pseudaminic acid synthase.
Probab=46.92 E-value=61 Score=30.23 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----C-CCCCCccc-cCCCCCCCCC-------CHHHHHHHHHHHHHcCC
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----A-PQGYMPGR-LYDLDASKYG-------SQADLKSLIQAFRQKGI 105 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----~-~~gY~~~d-~~~id~~~~G-------t~~d~~~Lv~~~H~~Gi 105 (358)
.|+++-..+.++-.++.|.++|=..=..... . .-.|...+ .+.-. +.|. +.+++++|.+.|++.||
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~el~~e~~~~L~~~~~~~Gi 91 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGR-TLYDLYQEAHTPWEWHKELFERAKELGL 91 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCc-cHHHHHHHhhCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999997665321100 0 01111110 11111 2222 36788999999999999
Q ss_pred EEEEEe
Q 018278 106 KCLADM 111 (358)
Q Consensus 106 ~VilD~ 111 (358)
.++-..
T Consensus 92 ~~~stp 97 (327)
T TIGR03586 92 TIFSSP 97 (327)
T ss_pred cEEEcc
Confidence 998763
No 227
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=46.89 E-value=2.4e+02 Score=26.06 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=53.3
Q ss_pred CCceEEEeeecCCCCC----------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHH
Q 018278 22 SPALLFQGFNWESSNK----------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~----------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~ 91 (358)
....||-.|--+..+. ..=.+..+.+.+..+.++|+++|-|-|+-+..+..|-... +.+ |-
T Consensus 20 ~~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~---~~~----g~-- 90 (314)
T cd00384 20 PDDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAY---DPD----GI-- 90 (314)
T ss_pred HHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCccccc---CCC----Ch--
Confidence 4467777885333221 1235788899999999999999999999544333332211 122 22
Q ss_pred HHHHHHHHHHHc--CCEEEEEeecccc
Q 018278 92 DLKSLIQAFRQK--GIKCLADMVINHR 116 (358)
Q Consensus 92 d~~~Lv~~~H~~--Gi~VilD~V~NH~ 116 (358)
+++-|+++++. .|-||.|+-+-..
T Consensus 91 -v~~air~iK~~~p~l~vi~DvcLc~Y 116 (314)
T cd00384 91 -VQRAIRAIKEAVPELVVITDVCLCEY 116 (314)
T ss_pred -HHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 34555555553 8999999987543
No 228
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=46.45 E-value=47 Score=31.85 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=44.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
++|..|+++||+-|.|.. ... ++ .-...++ |.-+.++..+.++.|++.+..|-+|++++.-+..
T Consensus 112 e~l~~l~~~GvnRiSiGv-QS~-~d-----~~L~~lg--R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGV-QSL-KE-----DDLKKLG--RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHCCCCEEEEEC-CcC-CH-----HHHHHcC--CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 667777777777777652 111 11 1122233 4457888888999999999999999999887654
No 229
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=46.19 E-value=29 Score=33.01 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=40.7
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++.+|++..++.|-.. ..-...-...=.-.+. ...|...+++++++.||++|+.||.|-+.-
T Consensus 109 ~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~-Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 109 VLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPS-SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 35667888776644211 0001112222223355 567999999999999999999999997754
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=46.09 E-value=17 Score=31.80 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=32.8
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL 79 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~ 79 (358)
.||+..+.+.|.--|+. ++.+.++|++-.+++-+|++.|.
T Consensus 149 ~GD~ld~~~~lq~~K~~-~~~vf~sppwggp~y~~~~~~DL 188 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIK-YDCVFLSPPWGGPSYLRADVYDL 188 (263)
T ss_pred echHHHHHHHHhhhhhe-eeeeecCCCCCCcchhhhhhhhh
Confidence 59999999999988888 99999999887776666665553
No 231
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=45.95 E-value=82 Score=28.91 Aligned_cols=51 Identities=20% Similarity=0.091 Sum_probs=32.4
Q ss_pred hhHHHcCCCEEEeCCCCCCCC---CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 50 PDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 50 ~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
++.++.|+++|-|.=+....+ .|+ -. ....+...+.+-|++|+++|.+|++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~--------g~-~~~~~~~~~~~~i~~lk~~G~kVii 72 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG--------GS-YPLDQGGWIKSDIAALRAAGGDVIV 72 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC--------CC-CCcccchhHHHHHHHHHHcCCeEEE
Confidence 466788999998863322211 111 01 1122356788889999999999988
No 232
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=45.76 E-value=28 Score=32.34 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.+++.|+.+++.+..|++++|.||+-+|-=
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE 116 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWE 116 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCc
Confidence 568889999999988888899999999953
No 233
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=45.74 E-value=26 Score=32.19 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
++++.|+.+++.+..+++++|+||+-+|==
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE 117 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE 117 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc
Confidence 578889999999888888899999999953
No 234
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=45.63 E-value=45 Score=27.42 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=39.5
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.|+.-..+-..-|+++||. |++. |- +..=|.+.+.++++++.++|++||+=+
T Consensus 9 SD~~~~~~a~~~L~~~gi~---------------~dv~----V~-SaHRtp~~~~~~~~~a~~~g~~viIa~ 60 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIP---------------YELR----VV-SAHRTPELMLEYAKEAEERGIKVIIAG 60 (156)
T ss_pred hhHHHHHHHHHHHHHcCCC---------------eEEE----EE-CcccCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3566666777888999986 3332 44 666788999999999999999887643
No 235
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.58 E-value=2.7e+02 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-.+.|++|++++|++|=++++=+ +|.|...
T Consensus 76 ~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 76 ALAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 36789999999999999988764 8887653
No 236
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=45.44 E-value=1.8e+02 Score=26.54 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |.+....+.-..++++.
T Consensus 155 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~ 192 (287)
T PRK05692 155 EAVADVAERLFA-LGCYEISLGDTIGVGTPGQVRAVLEA 192 (287)
T ss_pred HHHHHHHHHHHH-cCCcEEEeccccCccCHHHHHHHHHH
Confidence 668888888887 89999887 67777777666666544
No 237
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.37 E-value=25 Score=24.99 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHHhhhh-hHHHc-CCCEEEeCCCCCCCCC--CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 43 NSLKNSIP-DLSNA-GITHVWLPPPSQSVAP--QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 43 ~gl~~~L~-yl~~L-Gv~~I~l~Pi~~~~~~--~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
..+.+.+. .|..+ |+....+.+....... ..-...|..-+= +.-|...+..++++.|+++|.++|.
T Consensus 10 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i-S~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 10 GAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIAL-SYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34444444 44667 8888776542211000 111222222222 4557778899999999999999874
No 238
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=45.37 E-value=2.1e+02 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-.+.|+++++++|++|-++++ -++|.|...
T Consensus 77 ~i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 77 QIAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 367899999999999999998 678998764
No 239
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=45.30 E-value=32 Score=30.85 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----------------CCC------------CCCccccCCCCCCCCCCH
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----------------APQ------------GYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----------------~~~------------gY~~~d~~~id~~~~Gt~ 90 (358)
+-+.+..++.+..|+++|+..|+- |+.... .+. --...|...++..+.|+.
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 217 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVEQ-PLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGL 217 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCH
Confidence 346788888899999999999985 332210 000 012344556666677999
Q ss_pred HHHHHHHHHHHHcCCEEEEE
Q 018278 91 ADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD 110 (358)
.+.+++++.|+++|+++++=
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred HHHHHHHHHHHHcCCcEEec
Confidence 99999999999999999874
No 240
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=45.29 E-value=28 Score=31.09 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+++++|++.||++||.++..+
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEE
Confidence 36779999999999999999985
No 241
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=45.08 E-value=27 Score=32.02 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.++|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E 113 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE 113 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC
Confidence 3578899999998888888899999999984
No 242
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=44.84 E-value=34 Score=28.22 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.-++.++..+.++.+++.|+.|...+++....
T Consensus 120 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~ 151 (204)
T cd01335 120 SGESFKERLEALKELREAGLGLSTTLLVGLGD 151 (204)
T ss_pred CCcCHHHHHHHHHHHHHcCCCceEEEEEecCC
Confidence 55678999999999999999999999987543
No 243
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=44.81 E-value=51 Score=31.50 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=46.9
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCC--C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV--A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+..+..-+..++..|+..+++.+- +.. . .......-...+. ...|...+++++++.||++|+.|++|.
T Consensus 102 h~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~-n~tG~~~~~~~I~~l~~~~g~~livD~ 179 (402)
T TIGR02006 102 HKAVLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVN-NEIGVIQDIAAIGEICRERKVFFHVDA 179 (402)
T ss_pred cHHHHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCC-cCceecccHHHHHHHHHHcCCEEEEEc
Confidence 444444445567779988887432 111 0 1122333344566 678999999999999999999999998
Q ss_pred ec
Q 018278 112 VI 113 (358)
Q Consensus 112 V~ 113 (358)
+-
T Consensus 180 a~ 181 (402)
T TIGR02006 180 AQ 181 (402)
T ss_pred ch
Confidence 84
No 244
>PLN02814 beta-glucosidase
Probab=44.47 E-value=48 Score=32.98 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=45.2
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
.+....+-++-+|+||+++--++=-+..--..|-. .+| -...+=.++||++|.++||+.|+-+ .|.
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g-----~~N---~~Gl~fY~~lId~l~~~GI~P~VTL--~H~ 140 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRG-----LIN---PKGLLFYKNLIKELRSHGIEPHVTL--YHY 140 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCC-----CCC---HHHHHHHHHHHHHHHHcCCceEEEe--cCC
Confidence 46667788999999999998886533321112211 133 2346678999999999999999764 455
No 245
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.27 E-value=1.6e+02 Score=25.63 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh---cCCCeEEEeccCC
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN---TSPDFAVGEKWDS 231 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~---~~p~~~~gE~~~~ 231 (358)
+++.+.++...+ +|+|.+++ |.+..+.++...++++. .-|..-++=+.++
T Consensus 137 ~~~~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hn 190 (237)
T PF00682_consen 137 EELLELAEALAE-AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHN 190 (237)
T ss_dssp HHHHHHHHHHHH-HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBB
T ss_pred HHHHHHHHHHHH-cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 567788888877 89999997 56777777777776443 2232445545443
No 246
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=44.11 E-value=40 Score=28.11 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=36.8
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 49 L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.--|+.||.....+. .|+..++ ...-..+.+.++++.+++.|++|++|...-
T Consensus 43 a~~l~~LG~~~~~~~-------------~~~v~i~-~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 43 AVALARLGVSVTLVG-------------ADAVVIS-GLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHCCCcEEEEE-------------ccEEEEe-cccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 345677888777777 3444444 322114788999999999999999998753
No 247
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=43.89 E-value=1.7e+02 Score=26.11 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |.+....++-.+++++.
T Consensus 139 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~ 176 (259)
T cd07939 139 DFLIEFAEVAQE-AGADRLRFADTVGILDPFTTYELIRR 176 (259)
T ss_pred HHHHHHHHHHHH-CCCCEEEeCCCCCCCCHHHHHHHHHH
Confidence 567788888776 89999998 66677777766666544
No 248
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=43.56 E-value=2.7e+02 Score=26.07 Aligned_cols=70 Identities=9% Similarity=-0.008 Sum_probs=42.3
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
.+++.....++=|+..|..-...-++...++. .. -.+..+ .-.+.+++|++++|++|-++++= ++|.|..
T Consensus 38 ~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~-~~-~~~~~d--~~i~~~r~l~d~vh~~G~~i~~Q--L~H~G~~ 107 (337)
T PRK13523 38 FHLIHYGTRAAGQVGLVIVEATAVLPEGRISD-KD-LGIWDD--EHIEGLHKLVTFIHDHGAKAAIQ--LAHAGRK 107 (337)
T ss_pred HHHHHHHHHHcCCCeEEEECCeEECccccCCC-Cc-eecCCH--HHHHHHHHHHHHHHhcCCEEEEE--ccCCCCC
Confidence 34444445556688888776555444322221 10 011101 12688999999999999998765 5787764
No 249
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=43.50 E-value=28 Score=32.11 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
..+.|.+|++.|+++|.+|++|.
T Consensus 144 ~~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 144 PPDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEC
Confidence 37889999999999999999993
No 250
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.50 E-value=1.5e+02 Score=26.28 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++.+.+ .|+|.+++ |.+..+.++.++++++.
T Consensus 146 ~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 146 EYVLEVAKALEE-AGADEISLKDTVGLATPEEVAELVKA 183 (265)
T ss_pred HHHHHHHHHHHH-cCCCEEEechhcCCcCHHHHHHHHHH
Confidence 557788888887 99999999 77777777777776544
No 251
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=43.41 E-value=88 Score=28.51 Aligned_cols=65 Identities=11% Similarity=0.221 Sum_probs=38.8
Q ss_pred ceEEEeeecCCCCCCCC---chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGG---WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G---~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
.+.++...+.......| +-+.+...+.-+|++|+|+|-+.- +-.+ .++.+.|
T Consensus 14 ~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h---------------~p~~----------~~~~~~c 68 (298)
T PF02836_consen 14 PIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHH---------------YPPS----------PRFYDLC 68 (298)
T ss_dssp EE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETT---------------S--S----------HHHHHHH
T ss_pred EEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEccc---------------ccCc----------HHHHHHH
Confidence 45566665443322222 456667778899999999999831 1133 5677789
Q ss_pred HHcCCEEEEEeec
Q 018278 101 RQKGIKCLADMVI 113 (358)
Q Consensus 101 H~~Gi~VilD~V~ 113 (358)
-+.||-|+.++..
T Consensus 69 D~~GilV~~e~~~ 81 (298)
T PF02836_consen 69 DELGILVWQEIPL 81 (298)
T ss_dssp HHHT-EEEEE-S-
T ss_pred hhcCCEEEEeccc
Confidence 9999999999876
No 252
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=43.31 E-value=87 Score=28.79 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=56.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
++..+.+-..-++.+|||+|-|.=+.-++ ..+. +. -.+.+++|.+.++..||||.|-+-+ .|...
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt-~~--~l~~v~~lAdvfRpYGIkv~LSvnF--asP~~ 119 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNANP----------KLLT-PE--YLDKVARLADVFRPYGIKVYLSVNF--ASPIE 119 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGS-TT--THHHHHHHHHHHHHTT-EEEEEE-T--THHHH
T ss_pred chhHHHHHHHHHhhcCCceEEecccccCh----------hhcC-HH--HHHHHHHHHHHHhhcCCEEEEEeec--cCCcc
Confidence 44555555667789999999998766553 1222 21 4788999999999999999987533 33221
Q ss_pred CCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeE
Q 018278 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI-GFDGW 199 (358)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~-gvDGf 199 (358)
- .++...|--+|+|++--++.+..+-+.. ++-||
T Consensus 120 l---------------------------------------------ggL~TaDPld~~V~~WW~~k~~eIY~~IPDfgGf 154 (328)
T PF07488_consen 120 L---------------------------------------------GGLPTADPLDPEVRQWWKDKADEIYSAIPDFGGF 154 (328)
T ss_dssp T---------------------------------------------TS-S---TTSHHHHHHHHHHHHHHHHH-TT--EE
T ss_pred c---------------------------------------------CCcCcCCCCCHHHHHHHHHHHHHHHHhCCCccce
Confidence 0 0111134456889888777776655422 78899
Q ss_pred eeccC
Q 018278 200 RFDFV 204 (358)
Q Consensus 200 R~D~a 204 (358)
=+-|=
T Consensus 155 lVKAd 159 (328)
T PF07488_consen 155 LVKAD 159 (328)
T ss_dssp EE--S
T ss_pred EEEec
Confidence 88773
No 253
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=43.12 E-value=71 Score=29.72 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=37.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeec
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVI 113 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~-VilD~V~ 113 (358)
+.++.|++.|++.|.++- ++.+..-|..+. ..-|+.+...+-|+.+.+.|+. |-+-+|+
T Consensus 103 ~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~-~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 103 RHAKDLKEAGLKRVNVSL-------DSLDPERFAKIT-RRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHcCCCeEEEec-------ccCCHHHhheeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 345556666666655542 223332233344 3456889999999999999997 7777665
No 254
>PRK07050 cystathionine beta-lyase; Provisional
Probab=42.49 E-value=35 Score=32.73 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=40.2
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.++.+|++.+++.+-.. ..-...=...-.-.+. ...|...+++++++.||++|+.||+|-.+..
T Consensus 124 ~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~-Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 124 LARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPG-SVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCC-CCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 35667888777654210 0000111111122344 5568999999999999999999999988654
No 255
>PLN02428 lipoic acid synthase
Probab=42.49 E-value=80 Score=29.75 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=46.0
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+.+.+.++.|+++|++.+-+...... +.. +..| .+|=++++|+++-+.+-+.|.+-+.--.
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL~P-s~~------h~~v--~~~v~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYLRP-TKR------HLPV--KEYVTPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeeccccCC-Ccc------eeee--ecccCHHHHHHHHHHHHHcCCceEEecC
Confidence 6788888999999999988877654422 111 2223 4677888999999999999987665433
No 256
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.45 E-value=64 Score=28.71 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
.+-+++.|+.||++||+|..--.+-|.+.
T Consensus 53 ~~~l~eki~l~~~~gV~v~~GGtl~E~a~--------------------------------------------------- 81 (244)
T PF02679_consen 53 EEILKEKIDLAHSHGVYVYPGGTLFEVAY--------------------------------------------------- 81 (244)
T ss_dssp CHHHHHHHHHHHCTT-EEEE-HHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCeEeCCcHHHHHHH---------------------------------------------------
Confidence 46799999999999999987655544431
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC-CCCCHHHHHHHHHhcCC--CeEEEecc
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV-KGYAPSITKVYMENTSP--DFAVGEKW 229 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a-~~i~~~~~~~~~~~~~p--~~~~gE~~ 229 (358)
.+..+.+++++..+ +|+|.+-+..- -.++.+-+.++++..+. +.++.|+-
T Consensus 82 ---------~q~~~~~yl~~~k~-lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 82 ---------QQGKFDEYLEECKE-LGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---------HTT-HHHHHHHHHH-CT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred ---------hcChHHHHHHHHHH-cCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 12335555555555 99999999665 56888888888776554 56888874
No 257
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.40 E-value=1.8e+02 Score=26.46 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=48.5
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCC-CCHHHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFR 101 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~~d~~~Lv~~~H 101 (358)
..++.|++ +.+.+...+....+++.|+++|+|+=-.+. ..+ -. ..+ ++.+.+.+++++++
T Consensus 90 ~p~ivsi~--------g~~~~~~~~~a~~~~~~G~d~iElN~~cP~--~~~--------~g-~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 90 TPVIASIA--------GSTVEEFVEVAEKLADAGADAIELNISCPN--VKG--------GG-MAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CcEEEEEe--------cCCHHHHHHHHHHHHHcCCCEEEEECCCCC--CCC--------Cc-ccccCCHHHHHHHHHHHH
Confidence 34777766 345777777788889999999999732222 111 13 333 45677888888888
Q ss_pred Hc-CCEEEEEeecc
Q 018278 102 QK-GIKCLADMVIN 114 (358)
Q Consensus 102 ~~-Gi~VilD~V~N 114 (358)
+. ++-|.+-+-++
T Consensus 151 ~~~~~Pv~vKl~~~ 164 (296)
T cd04740 151 KATDVPVIVKLTPN 164 (296)
T ss_pred hccCCCEEEEeCCC
Confidence 87 77777765443
No 258
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=42.39 E-value=94 Score=28.66 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred CCceEEEeeecCCCCC----------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHH
Q 018278 22 SPALLFQGFNWESSNK----------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~----------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~ 91 (358)
....||-+|--+..+. ..=.+..+.+.++.+.++||++|-|-|+-+...........-++.+ |
T Consensus 20 ~~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~----g--- 92 (320)
T cd04824 20 KSNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDED----G--- 92 (320)
T ss_pred HHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCC----C---
Confidence 3467777774332211 1234678899999999999999999999532111111111112233 2
Q ss_pred HHHHHHHHHHHc--CCEEEEEeecccc
Q 018278 92 DLKSLIQAFRQK--GIKCLADMVINHR 116 (358)
Q Consensus 92 d~~~Lv~~~H~~--Gi~VilD~V~NH~ 116 (358)
=+++.|+++++. .|-||.|+-+-..
T Consensus 93 ~v~~air~iK~~~pdl~vi~Dvclc~Y 119 (320)
T cd04824 93 PVIQAIKLIREEFPELLIACDVCLCEY 119 (320)
T ss_pred hHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 235555555554 8999999987543
No 259
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=42.38 E-value=27 Score=33.28 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 80 ~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..++ ...|+..+++++++.||++|+.|++|-+.-
T Consensus 165 ~~~~-~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 165 THVD-GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred ECCC-CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 3455 678999999999999999999999998743
No 260
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=42.28 E-value=23 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
..-|...+++++++.||++|+.||+|-+.
T Consensus 143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 143 SMDGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred cCCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 44577778999999999999999999984
No 261
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.27 E-value=1.7e+02 Score=26.55 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |.+....+....++++.
T Consensus 149 ~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~ 186 (274)
T cd07938 149 ERVAEVAERLLD-LGCDEISLGDTIGVATPAQVRRLLEA 186 (274)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCccCHHHHHHHHHH
Confidence 567888888877 99999998 66666777666666544
No 262
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=42.21 E-value=31 Score=31.91 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
|++-|+.+++.+..+++++|+||+-+|-=....
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccc
Confidence 577889999999988888999999998865533
No 263
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=42.12 E-value=23 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCC
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVA 70 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~ 70 (358)
..+.+.++.|++.|++.|.+.|++...+
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~~~g 72 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAPVSG 72 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCccccC
Confidence 4466778889999999999999998743
No 264
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=42.04 E-value=22 Score=33.32 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=28.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++ ...|+..+++++++-||++|+.||+|-+.-
T Consensus 147 ~p~-n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 147 HVD-GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCC-CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 344 568999999999999999999999999865
No 265
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=41.87 E-value=8.6 Score=37.10 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 84 ASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 84 ~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.-+|..-|++++++.||++|+.|++|-
T Consensus 177 PTY~Gv~~di~~I~~~~h~~~~~llvDE 204 (417)
T PF01276_consen 177 PTYYGVCYDIKEIAEICHKHGIPLLVDE 204 (417)
T ss_dssp S-TTSEEE-HHHHHHHHCCTECEEEEE-
T ss_pred CCCCeEEECHHHHHHHhcccCCEEEEEc
Confidence 4566888999999999999999999995
No 266
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.79 E-value=29 Score=26.88 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=37.1
Q ss_pred hHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 51 DLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+..+|...+.+.+...... -......|..-+= +.=|...+..++++.||++|++||.
T Consensus 21 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 21 TLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI-SNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HhhcCCCceEEcccchhhccccCcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 55678999988865321110 0111222222222 5558889999999999999999875
No 267
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=41.72 E-value=22 Score=34.03 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 79 ~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
...+. ..-|...+++++++.||++|+.|++|.+
T Consensus 177 ~~~v~-~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 177 LSGVQ-YYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred Eeccc-cccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 44566 7789999999999999999999999974
No 268
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=41.70 E-value=33 Score=32.18 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++..+.++.||+.||+|-.=+.+.|-
T Consensus 177 ~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 177 STAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred CHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 6778899999999999999888888766
No 269
>PRK14017 galactonate dehydratase; Provisional
Probab=41.61 E-value=95 Score=29.56 Aligned_cols=68 Identities=9% Similarity=-0.071 Sum_probs=49.7
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC-------------------CCC---------CCCccccCCCCCCCCCCHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQ---------GYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-------------------~~~---------gY~~~d~~~id~~~~Gt~~d 92 (358)
+.+..++.+..|+++|+..|+ -|+.... +-+ -....|...++..+.|+..+
T Consensus 189 ~~~~A~~~~~~l~~~~~~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~ 267 (382)
T PRK14017 189 HKPMAKVLAKELEPYRPMFIE-EPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITE 267 (382)
T ss_pred CHHHHHHHHHhhcccCCCeEE-CCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 467777778888899999888 4553311 000 12345666677667899999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 018278 93 LKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~Vil 109 (358)
.+++++.|+++||+++.
T Consensus 268 ~~~ia~~A~~~gi~~~~ 284 (382)
T PRK14017 268 CRKIAAMAEAYDVALAP 284 (382)
T ss_pred HHHHHHHHHHcCCeEee
Confidence 99999999999999876
No 270
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=41.35 E-value=39 Score=31.95 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=39.1
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++.+|++.+++...-. ..-...-...-.-.+. ...|+..+++++++.||++|+.||.|-++
T Consensus 110 ~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~-NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 110 HWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPT-NPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HhhccCceEEEECCCCHHHHHHhcccCceEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 45667887777643200 0000111111112344 44789999999999999999999999876
No 271
>PLN02509 cystathionine beta-lyase
Probab=41.21 E-value=39 Score=33.26 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=27.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.+. ...|...|++++++.||++|+.||+|-..
T Consensus 225 sPs-NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 225 SPT-NPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 455 66789999999999999999999999873
No 272
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=41.19 E-value=33 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
-+||+-|.+.|++.|++|++=+++
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P 58 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP 58 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC
Confidence 479999999999999999986655
No 273
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.18 E-value=54 Score=32.54 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.|.++..+.|+.+++.||.+..++++..-+
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~ 349 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFEN 349 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 378889999999999999999999987544
No 274
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.05 E-value=1.3e+02 Score=26.58 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEeeccC-CCCCHHHHHHHHHhcCC--CeEEEec
Q 018278 180 QKELSDWMNWLKTEIGFDGWRFDFV-KGYAPSITKVYMENTSP--DFAVGEK 228 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a-~~i~~~~~~~~~~~~~p--~~~~gE~ 228 (358)
+..+.+++++..+ +|+|-+-+-.- -.+|.+-+.++++..+. +..+.|.
T Consensus 70 q~~~~~Yl~~~k~-lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 70 KGKFDEYLNECDE-LGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhhHHHHHHHHHH-cCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 3445556666655 88888888654 56788888777665443 4455554
No 275
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=41.03 E-value=32 Score=32.41 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeecc
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (358)
.+++.|+.+++.+..|++++|+||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 46788999999988888889999999994
No 276
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.03 E-value=17 Score=30.37 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q 018278 89 SQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD 110 (358)
++++++++++.||++|+++-+-
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhc
Confidence 4789999999999999998664
No 277
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=40.92 E-value=32 Score=32.53 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=50.9
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC------------------CCCCCCccccCCCC----------------C
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV------------------APQGYMPGRLYDLD----------------A 84 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~------------------~~~gY~~~d~~~id----------------~ 84 (358)
.|=..||...+.-|.+-|=..|-.+|++... .+++| -.||-+++ .
T Consensus 90 p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y-~iD~~~LE~~~~~~~vkl~iLCnPH 168 (388)
T COG1168 90 PGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRY-EIDFDALEKAFVDERVKLFILCNPH 168 (388)
T ss_pred CcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcE-EecHHHHHHHHhcCCccEEEEeCCC
Confidence 3567888888888888887777888887631 23344 12222222 1
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCEEEEEee
Q 018278 85 SKYG---SQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 85 ~~~G---t~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..-| |.++|++|.+-|.++|+.||-|-+
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 3345 489999999999999999998853
No 278
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.83 E-value=35 Score=30.63 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+++++|++.||+.|+.+++|+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 45899999999999999999996
No 279
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=40.66 E-value=81 Score=26.15 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=35.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
||+..+..++..=+ . ++.|.++|++-.++|.. .+-|++. ..+. .-++++|++.+.+.--.|++=+.=|
T Consensus 55 gD~~~~~~~~~~~~-~-~D~vFlSPPWGGp~Y~~---~~~fdL~-~~~~-p~~~~~l~~~~~~~t~nv~l~LPRn 122 (163)
T PF09445_consen 55 GDFFELLKRLKSNK-I-FDVVFLSPPWGGPSYSK---KDVFDLE-KSMQ-PFNLEDLLKAARKITPNVVLFLPRN 122 (163)
T ss_dssp S-HHHHGGGB--------SEEEE---BSSGGGGG---SSSB-TT-TSSS-S--HHHHHHHHHHH-S-EEEEEETT
T ss_pred CCHHHHHhhccccc-c-ccEEEECCCCCCccccc---cCccCHH-HccC-CCCHHHHHHHHHhhCCCEEEEeCCC
Confidence 77777666544311 2 89999999998877544 3344554 3332 2357778888888777777766554
No 280
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=40.60 E-value=65 Score=31.82 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=44.8
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+....+-++.+|+||+++--++=-+..--..|... .++ -...+=.++||++|.++||+.|+.+.
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~----~~N---~~gl~~Y~~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA----QPN---EEGLKFYDDMFDELLKYNIEPVITLS 131 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccceeeccCCCCC----CCC---HHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 3456677889999999999998865333211122110 112 12456689999999999999998863
No 281
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.59 E-value=70 Score=31.17 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=40.6
Q ss_pred hhHHHcCCCEEEeC-CCC-C---CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 50 PDLSNAGITHVWLP-PPS-Q---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 50 ~yl~~LGv~~I~l~-Pi~-~---~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..++..|+...++- |.- + ..-.......-.-.+- ...|...|++++.+.||++|+.||+|-+.-
T Consensus 127 ~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~-Np~~~v~di~~I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 127 VTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFA-NPQADVLDIPAVAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred HHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCC-CCCCcccCHHHHHHHHHHcCCeEEEECCCc
Confidence 35688999999985 420 0 0001112111112232 334678899999999999999999998853
No 282
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=40.53 E-value=66 Score=29.76 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=45.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
-|.+-...|+.|.++|+..+- |.+...+.+|..+..- .+ .|=...=++||++|++.|| |+|+ -|++..
T Consensus 106 ~~~~dl~~L~~~~~~GvR~lg--ltwn~~N~~g~g~~~~--~~---~GLs~~Gk~lV~~~N~LgI--iiDl--SH~s~k 173 (313)
T COG2355 106 PLGDDLDKLELFHALGVRSLG--LTWNRDNLFGDGCYER--TG---GGLTPFGKELVREMNELGI--IIDL--SHLSDK 173 (313)
T ss_pred cccccHHHHHHHHHhCceEEE--eeeccCCcccCccCCC--CC---CCCCHHHHHHHHHHHhcCC--EEEe--cccCCc
Confidence 455667888999999988776 5666666666555431 22 2223333899999999986 5664 677764
No 283
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=40.49 E-value=26 Score=33.16 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
...|...+++++++.||++|+.||+|-..
T Consensus 136 np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 136 NPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 45688888999999999999999999864
No 284
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=40.46 E-value=30 Score=33.86 Aligned_cols=73 Identities=7% Similarity=0.113 Sum_probs=49.4
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCC---------------------CCCCCCCCHHHHHHHHHHH
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYD---------------------LDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~---------------------id~~~~Gt~~d~~~Lv~~~ 100 (358)
=.||+.-|.-+..||+...-+.-.....+..+ +..... +...-+++.+.++.+++.+
T Consensus 16 gaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~--~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~~~e~~~~i~~~~ 93 (448)
T PRK08573 16 GAGIEADLKTFAALGVHGAVAITSVTAQNTYE--VRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLSNREIIEAVAKTV 93 (448)
T ss_pred HHHHHHHHHHHHHcCCeecccceEEEeecCCC--ceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHHHH
Confidence 48999999999999997766544333322211 111111 1112256788999999999
Q ss_pred HHcCCEEEEEeecccc
Q 018278 101 RQKGIKCLADMVINHR 116 (358)
Q Consensus 101 H~~Gi~VilD~V~NH~ 116 (358)
+++|++|++|-|+-..
T Consensus 94 k~~g~~vv~DPv~~~~ 109 (448)
T PRK08573 94 SKYGFPLVVDPVMIAK 109 (448)
T ss_pred HHcCCCEEEcCccccC
Confidence 9999999999887654
No 285
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=40.44 E-value=83 Score=30.09 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=36.0
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.-.+.+.+..++++|+++|.+... + ..+.+.- .. ......+++-+.+.+.||+|..
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~------d-l~P~~~~-~~----e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDD------D-LIPFGAP-PQ----ERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEeccc------c-cCCCCCC-hh----HHHHHHHHHHHHHHHhCCeEEE
Confidence 346778888999999999997421 0 1111100 10 1134467888889999999876
No 286
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.71 E-value=2.6e+02 Score=25.34 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|-+++ |.+....+.-..++++.
T Consensus 147 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~l~~~ 184 (280)
T cd07945 147 DYVFQLVDFLSD-LPIKRIMLPDTLGILSPFETYTYISD 184 (280)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 568888888887 89999987 67766667666666543
No 287
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.63 E-value=3.5e+02 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++.+.+ .|+|.+++ |++....+....+++++
T Consensus 149 ~~~~~~~~~~~~-~Gad~I~i~Dt~G~~~P~~v~~lv~~ 186 (582)
T TIGR01108 149 ETYLDLAEELLE-MGVDSICIKDMAGILTPKAAYELVSA 186 (582)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCCcCHHHHHHHHHH
Confidence 678888888887 99999987 77777777766666544
No 288
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=39.41 E-value=28 Score=32.93 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.+. ...|...|++++++.||++|+.||+|-.+
T Consensus 144 sP~-NPtg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 144 TPT-NPLMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCC-CCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 344 44577788999999999999999999874
No 289
>PLN02651 cysteine desulfurase
Probab=39.34 E-value=28 Score=32.72 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCC----------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVA----------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~----------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
....+..++..|+..+++.. -+... .......-...+. ..-|...+++++++.||++|+.+++|.+-
T Consensus 101 ~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~t~lv~v~~~~-n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 101 VLDSCRHLQQEGFEVTYLPV-KSDGLVDLDELAAAIRPDTALVSVMAVN-NEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHHhcCCEEEEEcc-CCCCcCCHHHHHHhcCCCcEEEEEECCC-CCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 33334455677888777642 21100 1122333344566 77899999999999999999999999874
No 290
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=39.28 E-value=59 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEE
Q 018278 88 GSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
-+.++++++.+.+++.|++|+
T Consensus 225 ~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 225 PSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCHHHHHHHHHHHHHcCCccc
Confidence 358899999999999998874
No 291
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.26 E-value=2.4e+02 Score=26.36 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
.+.|++|++++|++|-++++ -++|.|...
T Consensus 76 i~~lr~la~~vh~~ga~~~~--QL~H~G~~~ 104 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFL--QLWHVGRVS 104 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEE--EcccCccCC
Confidence 57899999999999999888 567987653
No 292
>PRK05968 hypothetical protein; Provisional
Probab=39.18 E-value=43 Score=31.97 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=48.9
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
..++|+.....+ ++++.-+. ..++..|++.+++.+.-... .-......-.-.+. ...+...++++++
T Consensus 101 ~Gd~Vl~~~~~y------~~t~~~~~---~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt-~~~~~~~dl~~i~ 170 (389)
T PRK05968 101 PGDRIVAVRHVY------PDAFRLFE---TILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPT-SWVFELQDVAALA 170 (389)
T ss_pred CCCEEEEeCCCc------hHHHHHHH---HHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCC-CCCCcHHHHHHHH
Confidence 345666654321 34444333 24677888888875420000 00011111112345 6678889999999
Q ss_pred HHHHHcCCEEEEEeec
Q 018278 98 QAFRQKGIKCLADMVI 113 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~ 113 (358)
+.||++|+.||+|-..
T Consensus 171 ~la~~~gi~vivD~a~ 186 (389)
T PRK05968 171 ALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHHcCCEEEEECCC
Confidence 9999999999999754
No 293
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=39.07 E-value=78 Score=29.44 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=38.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEeecc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVIN 114 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi-~VilD~V~N 114 (358)
+.++.|++.|++.|-++ =++.++.-|-.+. . -|+.+...+.++.|.+.|+ .|-+..|+.
T Consensus 105 ~~~~~L~~aGl~~v~IS-------lDs~~~e~~~~i~-~-~g~~~~vl~~i~~~~~~Gi~~v~in~v~~ 164 (329)
T PRK13361 105 RFAAELADAGLKRLNIS-------LDTLRPELFAALT-R-NGRLERVIAGIDAAKAAGFERIKLNAVIL 164 (329)
T ss_pred HHHHHHHHcCCCeEEEE-------eccCCHHHhhhhc-C-CCCHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 45566666666666553 1233333333444 3 4788899999999999999 788887753
No 294
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=39.05 E-value=74 Score=28.48 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=48.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCC------------C-----CCC---------CCCccccCCCCCCCCCCHHHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQS------------V-----APQ---------GYMPGRLYDLDASKYGSQADLK 94 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~------------~-----~~~---------gY~~~d~~~id~~~~Gt~~d~~ 94 (358)
+.+..++.++.|+++++..|+ -|+... + +-+ .....|...++..+.|+..+.+
T Consensus 139 ~~~~A~~~~~~l~~~~i~~iE-qP~~~~d~~~~~~l~~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~ 217 (263)
T cd03320 139 SLEEALAFLEALAAGRIEYIE-QPLPPDDLAELRRLAAGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALL 217 (263)
T ss_pred CHHHHHHHHHhhcccCCceEE-CCCChHHHHHHHHhhcCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHH
Confidence 467777888888888888777 344221 0 100 1224555667745689999999
Q ss_pred HHHHHHHHcCCEEEEE
Q 018278 95 SLIQAFRQKGIKCLAD 110 (358)
Q Consensus 95 ~Lv~~~H~~Gi~VilD 110 (358)
++++.|+++|+++++-
T Consensus 218 ~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 218 ELAEEARARGIPAVVS 233 (263)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999874
No 295
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=38.85 E-value=30 Score=32.64 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=29.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++ ...|+..+++++++-||++|..||+|-..-
T Consensus 154 ~p~-~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 154 HVD-GEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCC-CCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 456 778999999999999999999999998754
No 296
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=38.49 E-value=77 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcC-CEEEEEeecccc
Q 018278 88 GSQADLKSLIQAFRQKG-IKCLADMVINHR 116 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~G-i~VilD~V~NH~ 116 (358)
++.+++.+.++.+++.| +.|-..++++..
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 46799999999999999 899999988765
No 297
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=38.22 E-value=44 Score=31.22 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+.-.|.++..+.++.||+.||+|..-+.+.| +.
T Consensus 175 ~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gE 207 (340)
T TIGR03699 175 PKKISSEEWLEVMETAHKLGLPTTATMMFGH-VE 207 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CC
Confidence 4445888999999999999999999999997 44
No 298
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.19 E-value=91 Score=28.91 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=38.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEeec
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVI 113 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi-~VilD~V~ 113 (358)
+.++.|++.|++.|.++. ++.+..-|..+. .. ++.+.+.+-++.|.+.|+ .|.+-+|+
T Consensus 109 ~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~-~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 109 RRAAALKDAGLDRVNVSL-------DSLDPERFKAIT-GR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHcCCCEEEEEe-------ccCCHHHhccCC-CC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 445566666666665543 223333344455 43 788999999999999999 77777765
No 299
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.19 E-value=1.3e+02 Score=28.74 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=38.0
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.+.+-.+.++.+++ .|.|.|..+... .+|..+ +.++++++.+.+.++|+.|.+
T Consensus 276 s~e~a~~La~ll~~l~~-~VnLIPYN~~~~------~~~~~p------s~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 276 GTEHAHQLAELLKDTPC-KINLIPWNPFPG------APYGRS------SNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CHHHHHHHHHHHhcCCc-eEEEecCCCCCC------CCCCCC------CHHHHHHHHHHHHHCCCeEEE
Confidence 34555555567777775 999999776431 222222 367888888889999999864
No 300
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=38.15 E-value=34 Score=31.68 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++++++++.|+++|+.||+|-++-..
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 170 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDF 170 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECccccc
Confidence 4788999999999999999999887533
No 301
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=38.10 E-value=59 Score=30.97 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=42.3
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
++|..|+++||+.|.|.- ... + ..-...++ |--+.++..+.++.+++.++.|-+|+.++--+..
T Consensus 105 e~L~~l~~~GvnrislGv-QS~-~-----d~vL~~l~--R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV-QAL-N-----DADLRFLG--RLHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred HHHHHHHHcCCCEEEEec-ccC-C-----HHHHHHcC--CCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 566677777777776652 111 1 11122333 3347888899999999999999999999865543
No 302
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=38.01 E-value=93 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=15.8
Q ss_pred CCCceeecccCCCCCcCcCCC
Q 018278 298 LPQNAVTFIDNHDTGSTQRLW 318 (358)
Q Consensus 298 ~~~~~v~f~~nHD~~r~~~~~ 318 (358)
.+.++|.++++||++.+..-+
T Consensus 393 ~~~nsva~tsTHD~ptl~gww 413 (520)
T COG1640 393 YPPNSVATTSTHDLPTLRGWW 413 (520)
T ss_pred cccceeEEeccCCChhHHHHH
Confidence 456789999999997655533
No 303
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=37.93 E-value=2.1e+02 Score=26.69 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-CC----------CCCCCccccCCCCCCCC
Q 018278 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VA----------PQGYMPGRLYDLDASKY 87 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~----------~~gY~~~d~~~id~~~~ 87 (358)
.+.++.+++.... .+-... ....+..|+..+.+..-... .. .......-...++ ..-
T Consensus 77 ~~~~~~vlv~~~~---------~~~~~~--~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~-~~t 144 (368)
T PRK13479 77 VPRDGKVLVPDNG---------AYGARI--AQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCE-TTT 144 (368)
T ss_pred cCCCCeEEEEeCC---------chHHHH--HHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEccc-Ccc
Confidence 4566777776431 122211 34566789988877432111 00 0112222244555 678
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
|...+++++++.||++|+.||+|-+ .+.+
T Consensus 145 G~~~~~~~i~~l~~~~~~~livDa~-~~~g 173 (368)
T PRK13479 145 GILNPLDEIAAVAKRHGKRLIVDAM-SSFG 173 (368)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEcc-cccC
Confidence 9989999999999999999999955 3444
No 304
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=37.87 E-value=35 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.++++++++-||++|+.||+|-+...
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 367899999999999999999998654
No 305
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=37.79 E-value=90 Score=27.69 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=33.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.+.+.++.-+.||+..|-+.+-... .++. .+ ..+ -..+.|+++.+.|.+.||++.+.-
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~---~~~~------~~-~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTP---AGFS------SE-QIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC---CCCC------HH-HHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 344667788889999999876432110 1111 01 000 012445666666667777776664
No 306
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=37.69 E-value=56 Score=27.10 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHhhhhhHHHcCCCEEEeC--CCCCCC--CCCCCCccccCCCC--CCCCCCHHHHHHHHHHHHHc
Q 018278 45 LKNSIPDLSNAGITHVWLP--PPSQSV--APQGYMPGRLYDLD--ASKYGSQADLKSLIQAFRQK 103 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~--Pi~~~~--~~~gY~~~d~~~id--~~~~Gt~~d~~~Lv~~~H~~ 103 (358)
+.+-+..|++.||++|--. |-++.. ...|....++-..| +|.....++|.++++++.+.
T Consensus 29 ~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~ 93 (166)
T PTZ00242 29 LPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAK 93 (166)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3356899999999999954 222110 12455555544333 12223346777777777655
No 307
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=37.58 E-value=2e+02 Score=28.33 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHhc
Q 018278 179 VQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~ 219 (358)
..+++.+.++...+ .|+|.+++ |++..+.+....+++++.
T Consensus 161 t~~y~~~~a~~l~~-~Gad~I~IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 161 TLNYYLSLVKELVE-MGADSICIKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred cHHHHHHHHHHHHH-cCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 34778888888887 99999998 777777777777765553
No 308
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=37.52 E-value=3.4e+02 Score=25.20 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCceEEEeeecCCCCC----------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHH
Q 018278 22 SPALLFQGFNWESSNK----------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~----------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~ 91 (358)
....||-+|--+..+. ..=.+..+.+.+..+.++|+++|-|-|+-+..+..|-...| .+ |-
T Consensus 28 ~~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~---~~----g~-- 98 (323)
T PRK09283 28 PNDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYN---PD----GL-- 98 (323)
T ss_pred HHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccC---CC----CH--
Confidence 3467888885333221 12257888999999999999999999993332222321111 12 22
Q ss_pred HHHHHHHHHHH--cCCEEEEEeecccc
Q 018278 92 DLKSLIQAFRQ--KGIKCLADMVINHR 116 (358)
Q Consensus 92 d~~~Lv~~~H~--~Gi~VilD~V~NH~ 116 (358)
+.+.|+.+++ -.|-||.|+-+-..
T Consensus 99 -v~rair~iK~~~p~l~vi~DVcLc~Y 124 (323)
T PRK09283 99 -VQRAIRAIKKAFPELGVITDVCLDEY 124 (323)
T ss_pred -HHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 3444444444 48999999988543
No 309
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=37.45 E-value=40 Score=31.64 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
+++.|+.+++.+..+++++|+||+-+|-=
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 68889999998888888899999999975
No 310
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.23 E-value=25 Score=26.64 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~ 72 (358)
.+.+-++.+.+-|++.|+|.|++-..+.|
T Consensus 43 ~i~~~l~~l~~~G~~~i~lvPl~L~~G~H 71 (103)
T cd03413 43 GLDDVLAKLKKAGIKKVTLMPLMLVAGDH 71 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEehhheeccc
Confidence 35566667889999999999999886665
No 311
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=37.17 E-value=38 Score=32.83 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+.||.|-++.|..
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 47889999999999999999999998864
No 312
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=37.08 E-value=30 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 87 YGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 87 ~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-|...+++++++.||++|+.+|+|....-.
T Consensus 105 ~g~~~~~~~l~~~~~~~~~~li~D~a~~~~ 134 (170)
T cd01494 105 GGVLVPLKEIRKIAKEYGILLLVDAASAGG 134 (170)
T ss_pred CCeEcCHHHHHHHHHHcCCEEEEecccccc
Confidence 355566799999999999999999766543
No 313
>PRK09989 hypothetical protein; Provisional
Probab=36.76 E-value=98 Score=27.45 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCC--------CCCCCCccccCCCCCCCC--CC-------------HHHHHHHHHHHH
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKY--GS-------------QADLKSLIQAFR 101 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~--------~~~gY~~~d~~~id~~~~--Gt-------------~~d~~~Lv~~~H 101 (358)
+.+.++.++++|+++|+|.-+.... ..+|-.+..+-..- ..+ |. .+++++.|+.|+
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~ 95 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAP-GDINAGEWGLSALPGREHEARADIDLALEYAL 95 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCC-CccCCCCCcccCCCccHHHHHHHHHHHHHHHH
Q ss_pred HcCCEEEE
Q 018278 102 QKGIKCLA 109 (358)
Q Consensus 102 ~~Gi~Vil 109 (358)
+.|.+.|.
T Consensus 96 ~lg~~~v~ 103 (258)
T PRK09989 96 ALNCEQVH 103 (258)
T ss_pred HhCcCEEE
No 314
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=36.67 E-value=38 Score=31.87 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=36.0
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
|+++.+.. .-+-|+++|++.=- +. +..+.. .+ =+.+++++.|+.||++|.|+++=+-
T Consensus 14 g~l~~l~~----ai~~GADaVY~G~~-~~-~~R~~a-~n---------fs~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 14 GNLEDLKA----AIAAGADAVYIGEK-EF-GLRRRA-LN---------FSVEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred CCHHHHHH----HHHcCCCEEEeCCc-cc-cccccc-cc---------CCHHHHHHHHHHHHHcCCeEEEEec
Confidence 45544443 34567999998732 11 122222 21 2456799999999999999986543
No 315
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=36.64 E-value=54 Score=30.77 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=50.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCC-----------------CCC-----------CCCccccCCCCCCCCCCHH
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV-----------------APQ-----------GYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----------------~~~-----------gY~~~d~~~id~~~~Gt~~ 91 (358)
=+.+..++.++.|+++|+..|+ -|+.... +.. .-...|+..++..+.|+..
T Consensus 200 ~~~~~a~~~~~~l~~~~i~~iE-qP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 200 WDLAEAIRLARALEEYDLFWFE-EPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred CCHHHHHHHHHHhCccCCCeEc-CCCCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 3577888888888888988777 3443311 000 1235667777766679999
Q ss_pred HHHHHHHHHHHcCCEEEEE
Q 018278 92 DLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD 110 (358)
+.+++++.|+++||+|+.=
T Consensus 279 ~~~~i~~~a~~~g~~~~~~ 297 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPH 297 (357)
T ss_pred HHHHHHHHHHHcCCeEecc
Confidence 9999999999999998764
No 316
>PRK08960 hypothetical protein; Provisional
Probab=36.40 E-value=43 Score=31.79 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++++++++.||++|+-||.|-++.+.
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDEIYHGL 210 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 3789999999999999999999988655
No 317
>PRK14012 cysteine desulfurase; Provisional
Probab=36.28 E-value=45 Score=31.88 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=45.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCC-C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.....-...++..|++.+++.+--... . ...-...-...+. ...|...+++++.+.||++|+.|+.|-+
T Consensus 104 ~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~-n~tG~~~~~~~I~~la~~~g~~vivD~a 182 (404)
T PRK14012 104 HKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVN-NEIGVIQDIAAIGEICRERGIIFHVDAA 182 (404)
T ss_pred cHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcC-CCccchhhHHHHHHHHHHcCCEEEEEcc
Confidence 4444444445666799888874321110 0 0111222234455 6679999999999999999999999987
Q ss_pred c
Q 018278 113 I 113 (358)
Q Consensus 113 ~ 113 (358)
-
T Consensus 183 ~ 183 (404)
T PRK14012 183 Q 183 (404)
T ss_pred h
Confidence 4
No 318
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=36.18 E-value=33 Score=32.74 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+. ...|+..+++++++.||++|+.||.|-+.-
T Consensus 154 ~p~-NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 154 TPT-NPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCC-CCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 344 556889999999999999999999997653
No 319
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=36.03 E-value=91 Score=27.25 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEE
Q 018278 90 QADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD 110 (358)
.++.++||+.+-+.|..|.-.
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred hHHHHHHHHHHHhcccEEehh
Confidence 678999999999999988654
No 320
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=35.86 E-value=40 Score=32.31 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
+.++|+++++-|.++|+-||.|-++.+..-+
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd 211 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYD 211 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccC
Confidence 5899999999999999999999999988655
No 321
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.83 E-value=33 Score=33.46 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=40.0
Q ss_pred hHHHcCCCEEEeC-CCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 51 DLSNAGITHVWLP-PPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 51 yl~~LGv~~I~l~-Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.++..|+..+++. |.-. ..-...-...-.-.+. ...|...|++++++.||++|+.||+|-.
T Consensus 128 ~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~s-Np~G~v~Dl~~I~~la~~~gi~liVD~t 193 (436)
T PRK07812 128 TLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETIS-NPQIDVLDIPGVAEVAHEAGVPLIVDNT 193 (436)
T ss_pred HhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCC-CCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 3567899888874 3100 0001111122233455 6679999999999999999999999975
No 322
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.83 E-value=98 Score=28.93 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCC----CCC-CC-CCCccc------cCCCCCCCCC-CHHHHHHHHHHHHHcCC
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQ----SVA-PQ-GYMPGR------LYDLDASKYG-SQADLKSLIQAFRQKGI 105 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~----~~~-~~-gY~~~d------~~~id~~~~G-t~~d~~~Lv~~~H~~Gi 105 (358)
.|+++-..+.++-.++.|+++|=+.-... .+. .. .|...+ .|.+- .++. +.++++.|.+.|++.||
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~e~~~~L~~~~~~~Gi 90 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEML-KKLELSEEDHRELKEYCESKGI 90 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHH-HHhCCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999998765211 001 11 232222 12211 2222 37899999999999999
Q ss_pred EEEEE
Q 018278 106 KCLAD 110 (358)
Q Consensus 106 ~VilD 110 (358)
.++-.
T Consensus 91 ~~~st 95 (329)
T TIGR03569 91 EFLST 95 (329)
T ss_pred cEEEE
Confidence 99865
No 323
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=35.71 E-value=43 Score=25.81 Aligned_cols=55 Identities=20% Similarity=0.068 Sum_probs=35.4
Q ss_pred hHHH-cCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 51 DLSN-AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 51 yl~~-LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
++.. +|+..+...+.... . .-...|..-+= +.-|...+..+.++.|+++|+++|.
T Consensus 20 ~l~~~~~~~~~~~~~~~~~-~--~~~~~dl~I~i-S~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 20 LLLDEAKIPVYVVKDYTLP-A--FVDRKTLVIAV-SYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHhccCCCEEEecCccCc-C--CCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4555 48888876542211 0 11122333333 6678999999999999999999873
No 324
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.51 E-value=2.7e+02 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |++..+.++...++++.
T Consensus 141 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~ 178 (263)
T cd07943 141 EELAEQAKLMES-YGADCVYVTDSAGAMLPDDVRERVRA 178 (263)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCcCHHHHHHHHHH
Confidence 667777887776 89999998 66677777777776554
No 325
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=35.42 E-value=34 Score=32.55 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=40.1
Q ss_pred hHHHcCCCEEEeCCCCCC----CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQS----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~----~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++..|++.+++.+.-.. .-...-...-.-.+. ...|..-+++++++.||++|+.||+|-..
T Consensus 105 ~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~ps-nptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 105 VVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPT-NPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred HHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCC-CCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 346689998887642100 001111111123355 66788889999999999999999999863
No 326
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.36 E-value=2.6e+02 Score=26.39 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=46.4
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
+..|.++........| +-+.+.+-.+.++++++ .|.|.|..+..+ .+|..+ +.+.++++.+.+.
T Consensus 248 ~~~v~ieyvLI~GvND---s~e~~~~L~~ll~~l~~-~vnlIPyn~~~~------~~~~~p------s~e~i~~f~~~L~ 311 (349)
T PRK14463 248 RRKITIEYVMIRGLND---SLEDAKRLVRLLSDIPS-KVNLIPFNEHEG------CDFRSP------TQEAIDRFHKYLL 311 (349)
T ss_pred CCeEEEEEEEeCCCCC---CHHHHHHHHHHHhccCc-eEEEEecCCCCC------CCCCCC------CHHHHHHHHHHHH
Confidence 4567776655444433 24445555556667765 788888766532 222222 4788889999999
Q ss_pred HcCCEEEEE
Q 018278 102 QKGIKCLAD 110 (358)
Q Consensus 102 ~~Gi~VilD 110 (358)
++||.|.+=
T Consensus 312 ~~gi~v~vR 320 (349)
T PRK14463 312 DKHVTVITR 320 (349)
T ss_pred HCCceEEEe
Confidence 999999653
No 327
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=35.22 E-value=19 Score=33.98 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=48.7
Q ss_pred hHHHHhhhhhHH-HcCCCEEEeCCCCCCCC---------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 42 YNSLKNSIPDLS-NAGITHVWLPPPSQSVA---------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 42 ~~gl~~~L~yl~-~LGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+...-+..+. ..|+...++..-....- .......-+..++ ..-|...+++++.+.||++|+.+++|.
T Consensus 98 ~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~-~~tG~~~pi~~I~~~~~~~~~~~~vD~ 176 (371)
T PF00266_consen 98 HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVE-NSTGVRNPIEEIAKLAHEYGALLVVDA 176 (371)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBE-TTTTBBSSHHHHHHHHHHTTSEEEEE-
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeeccc-ccccEEeeeceehhhhhccCCceeEec
Confidence 555554455444 67887777743222111 1345566677888 889999999999999999999999998
Q ss_pred e
Q 018278 112 V 112 (358)
Q Consensus 112 V 112 (358)
+
T Consensus 177 ~ 177 (371)
T PF00266_consen 177 A 177 (371)
T ss_dssp T
T ss_pred h
Confidence 6
No 328
>PLN00175 aminotransferase family protein; Provisional
Probab=35.16 E-value=46 Score=32.04 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 37899999999999999999999987764
No 329
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.07 E-value=2.6e+02 Score=25.15 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=32.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~ 106 (358)
++.+.+++++++|+++++|.+ .+|..|. .+.-+.++.+++.+.+.++++.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~--~~P~~w~-----------~~~~~~~~~~~~~~~~~~~~~~ 61 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFL--KSPRWWR-----------RPMLEEEVIDWFKAALETNKNL 61 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEe--cCccccC-----------CCCCCHHHHHHHHHHHHHcCCC
Confidence 567789999999999999932 2222221 2233455566666667777776
No 330
>PRK13561 putative diguanylate cyclase; Provisional
Probab=35.03 E-value=57 Score=33.43 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=47.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC-----------ccccCCCCCCCC-----CCHHHHHHHHHHHHHc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM-----------PGRLYDLDASKY-----GSQADLKSLIQAFRQK 103 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~-----------~~d~~~id~~~~-----Gt~~d~~~Lv~~~H~~ 103 (358)
.+...+.+.+..|+++||.--- +. -..||. +.|+-.|| ..| .+..-++.+++.||+.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-----dd-fG~g~ssl~~L~~l~~l~~d~lKiD-~s~i~~i~~~~~~v~~i~~~a~~l 603 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-----DD-FGMGYAGLRQLQHMKSLPIDVLKID-KMFVDGLPEDDSMVAAIIMLAQSL 603 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-----EC-CCCCcccHHHHhhcCCCCCcEEEEC-HHHHhcCCCCHHHHHHHHHHHHHC
Confidence 4577888889999999996433 11 122332 45666666 333 3456789999999999
Q ss_pred CCEEEEEeecc
Q 018278 104 GIKCLADMVIN 114 (358)
Q Consensus 104 Gi~VilD~V~N 114 (358)
||+||..-|=+
T Consensus 604 ~i~viAegVE~ 614 (651)
T PRK13561 604 NLQVIAEGVET 614 (651)
T ss_pred CCcEEEecCCC
Confidence 99999997654
No 331
>PLN02808 alpha-galactosidase
Probab=35.03 E-value=69 Score=30.64 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=33.7
Q ss_pred hHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 51 DLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
-|+++|++.|.|=--+... ...|.. .+|+.+|- .-++.|++.+|++|||.=+
T Consensus 62 Gl~~~Gy~yv~iDd~W~~~~rd~~G~~-----~~d~~rFP--~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 62 GLAALGYKYINLDDCWAELKRDSQGNL-----VPKASTFP--SGIKALADYVHSKGLKLGI 115 (386)
T ss_pred chHHhCCEEEEEcCCcCCCCcCCCCCE-----eeChhhcC--ccHHHHHHHHHHCCCceEE
Confidence 3799999999984444322 122322 22323443 3599999999999998755
No 332
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=34.96 E-value=34 Score=32.55 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=39.7
Q ss_pred hHHHcCCCEEEeCCCC-C---CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 51 DLSNAGITHVWLPPPS-Q---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~-~---~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++.+|+..+++...- + ..-...-...-.-.+. ...|+..+++++++.||++|+.||+|-+.-
T Consensus 113 ~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~-np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 113 ILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPS-NPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred HHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 4566788777664320 0 0000111112122345 567888899999999999999999998853
No 333
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=34.94 E-value=1.6e+02 Score=26.29 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 78 d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
|.+... |..-+..+||+=|.++++.|-.|++-+
T Consensus 73 ~iptf~-P~~~~daeFr~~v~aLnaeGkavllsL 105 (332)
T COG3469 73 DIPTFK-PYNDPDAEFRAQVGALNAEGKAVLLSL 105 (332)
T ss_pred CCcccC-cCCCCHHHHHHHHHHhhccCcEEEEEc
Confidence 344445 555567999999999999999998753
No 334
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=34.94 E-value=45 Score=30.02 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 85 SKYGS--QADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 85 ~~~Gt--~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++|. ...|+++++.++++|..||+|+=++
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 44454 6788999999999999999998654
No 335
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=34.91 E-value=1.2e+02 Score=28.59 Aligned_cols=68 Identities=9% Similarity=-0.085 Sum_probs=50.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC-------------------CCC---------CCCccccCCCCCCCCCCHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQ---------GYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-------------------~~~---------gY~~~d~~~id~~~~Gt~~d 92 (358)
+.+..++.+..|+++|+..|+ -|+-... +-. .....|...+|..+.|+..+
T Consensus 175 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 253 (361)
T cd03322 175 TPNQAARFGKDVEPYRLFWME-DPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITP 253 (361)
T ss_pred CHHHHHHHHHHhhhcCCCEEE-CCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 467777888888899998888 4543211 000 24457777888457799999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 018278 93 LKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~Vil 109 (358)
.+++++.|+++|++++.
T Consensus 254 ~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 254 ARKIADLASLYGVRTGW 270 (361)
T ss_pred HHHHHHHHHHcCCeeec
Confidence 99999999999999985
No 336
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.89 E-value=2.9e+02 Score=26.05 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
+..|++..-......| +-+.+.+-.+.|+.+++ .|.|.|..+... .+| ..+ +.++++++.+.++
T Consensus 253 gr~I~iey~LIpGvND---s~e~a~~La~~l~~l~~-~VnLIPynp~~~-~~~-----~~p------s~e~i~~f~~~L~ 316 (345)
T PRK14457 253 GRRVSFEYILLGGVND---LPEHAEELANLLRGFQS-HVNLIPYNPIDE-VEF-----QRP------SPKRIQAFQRVLE 316 (345)
T ss_pred CCEEEEEEEEECCcCC---CHHHHHHHHHHHhcCCC-eEEEecCCCCCC-CCC-----CCC------CHHHHHHHHHHHH
Confidence 4456666554333333 34555555566777776 799999777532 233 222 4678888999999
Q ss_pred HcCCEEE
Q 018278 102 QKGIKCL 108 (358)
Q Consensus 102 ~~Gi~Vi 108 (358)
++|+.|.
T Consensus 317 ~~Gi~vt 323 (345)
T PRK14457 317 QRGVAVS 323 (345)
T ss_pred HCCCeEE
Confidence 9999985
No 337
>PRK07568 aspartate aminotransferase; Provisional
Probab=34.83 E-value=43 Score=31.76 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.||++|+.||.|-++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 47899999999999999999999887553
No 338
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=34.82 E-value=39 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 578999999999999999999964
No 339
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=34.71 E-value=49 Score=29.48 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+++++|++.|++.||.+++.+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 46789999999999999999985
No 340
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=34.67 E-value=85 Score=30.72 Aligned_cols=32 Identities=3% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcC-CEEEEEeeccccccc
Q 018278 88 GSQADLKSLIQAFRQKG-IKCLADMVINHRTAE 119 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~G-i~VilD~V~NH~~~~ 119 (358)
-+.++..+.++.+++.| +.|.+|++++.-+..
T Consensus 196 ~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 196 DDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 36888999999999999 899999999876653
No 341
>PRK15029 arginine decarboxylase; Provisional
Probab=34.65 E-value=30 Score=36.17 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 84 ASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 84 ~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.-+|...|++.+++.||++|+.|++|-.
T Consensus 321 PTY~Gv~~di~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 321 CTYDGVCYNAKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred CCCcceeeCHHHHHHHHHhcCCeEEEECc
Confidence 45679999999999999999999999953
No 342
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=34.45 E-value=1.1e+02 Score=29.01 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEe
Q 018278 91 ADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
..+.+=|+.|+.+||||+|-+
T Consensus 90 Tqi~~di~~CQS~GiKVlLSL 110 (568)
T KOG4701|consen 90 TQIETDIQVCQSNGIKVLLSL 110 (568)
T ss_pred chhhhHHHHHHhcCeEEEEec
Confidence 456677889999999999975
No 343
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=34.44 E-value=54 Score=25.83 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEE
Q 018278 88 GSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+.+|++++++.|++++++|.+
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEE
Confidence 3789999999999999999875
No 344
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=34.12 E-value=44 Score=30.41 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
.+.|+++|++++++|+.||+|+=.+=.
T Consensus 72 ~~~l~~~i~~l~~~g~~VilD~K~~DI 98 (278)
T PRK00125 72 LAQLERTIAYLREAGVLVIADAKRGDI 98 (278)
T ss_pred hhHHHHHHHHHHHCCCcEEEEeecCCh
Confidence 567899999999999999999866533
No 345
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=33.98 E-value=40 Score=30.48 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=30.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 79 ~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.+.+| ..||+..|-+...+-||+.|+-++|.-.+
T Consensus 162 lTh~D-g~YGNl~Dakkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 162 LTHVD-GEYGNLADAKKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred EeccC-CCcCCchhhHHHHHHHHHcCCceEeecce
Confidence 46789 99999999999999999999999987544
No 346
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=33.80 E-value=24 Score=33.69 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=50.6
Q ss_pred CCCCCceEEEe-eecCCCCCCCCchHHHHhhhh--hHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHH
Q 018278 19 PFTSPALLFQG-FNWESSNKAGGWYNSLKNSIP--DLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 19 ~~~~~~v~~q~-F~~~~~~~~~G~~~gl~~~L~--yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
.-+++.|.+++ |+..|-+. -.|-...+.+. +|.--|....-|+==+.+. .|--.=-||-+++ +|.|..+||+.
T Consensus 24 e~v~~~v~~rI~~nf~sqa~--~PFl~tlD~vKkv~l~TDGlgQ~vllKGY~~E-GHDS~hpdy~~~~-~R~GG~~D~~~ 99 (425)
T PF12905_consen 24 EEVPDLVVYRIAMNFGSQAQ--NPFLRTLDNVKKVSLATDGLGQSVLLKGYQSE-GHDSAHPDYGNIN-KRAGGAEDFNT 99 (425)
T ss_dssp GGGGGEEEEEEEE--TT--S--S-HHHHHHHHHHHHHHHTS-EEEEEEET-BTT-STTSSTT-TT-B--GGGTHHHHHHH
T ss_pred cccccceEEEeccchhhccc--ChHHHHHHHHHHHhhhcCCccceEEEeecccC-CccCCCcchhhhc-cccccHHHHHH
Confidence 33455677744 55333322 34544444443 4555666666665544442 2333345677899 99999999999
Q ss_pred HHHHHHHcCCEEEEEe
Q 018278 96 LIQAFRQKGIKCLADM 111 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~ 111 (358)
|+++.|+.|-++=+=+
T Consensus 100 L~~~g~~yna~~GvHV 115 (425)
T PF12905_consen 100 LLEEGRKYNAKFGVHV 115 (425)
T ss_dssp HHHHHHTTTEEEEEEE
T ss_pred HHHHHHhhCCeEEEEE
Confidence 9999999998776543
No 347
>PLN02187 rooty/superroot1
Probab=33.76 E-value=48 Score=32.49 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~ 250 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEVYDRTI 250 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 48899999999999999999999998753
No 348
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.73 E-value=50 Score=25.59 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=40.7
Q ss_pred CchHHHHhhh-hhHHHcCCCEEEeCCCCCCCCCC-CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 40 GWYNSLKNSI-PDLSNAGITHVWLPPPSQSVAPQ-GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 40 G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~~~-gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
|.-..+...+ .+++.+|....-+.......... .-...|..-+= +.-|...+..++++.|+++|+++|+
T Consensus 22 g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i-S~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 22 GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAI-SFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 4455555554 47788888666553322211100 11223333333 5567778999999999999999854
No 349
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=33.64 E-value=34 Score=32.57 Aligned_cols=62 Identities=19% Similarity=0.100 Sum_probs=42.0
Q ss_pred hHHHcCCCEEEeCCCCCCC-C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
..+..|++.+++..-.... . ...-...-...++ ..-|+..+++++++.||++|+.|++|.+.
T Consensus 126 ~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 126 VAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMS-NVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred HHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECcc-ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 3467899888875311110 0 0111222234566 77899999999999999999999999986
No 350
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=33.63 E-value=38 Score=31.59 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCC-C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee--
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV-- 112 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V-- 112 (358)
.+..-+..++..|+..+.+..-.... . ...-...-...+. ..-|...+++++++.||++|+.|++|-+
T Consensus 100 s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~-n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~ 178 (353)
T TIGR03235 100 AVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVN-NETGSIQPIREIAEVLEAHEAFFHVDAAQV 178 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEccc-CCceeccCHHHHHHHHHHcCCEEEEEchhh
Confidence 33344455677798888875321110 0 0111122234455 6678999999999999999999999997
Q ss_pred cccc
Q 018278 113 INHR 116 (358)
Q Consensus 113 ~NH~ 116 (358)
+.+.
T Consensus 179 ~g~~ 182 (353)
T TIGR03235 179 VGKI 182 (353)
T ss_pred cCCc
Confidence 4444
No 351
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=33.61 E-value=66 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-+.++..+.++.||+.||++..-+.+.|-
T Consensus 142 ~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 142 LSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 36788889999999999999999999876
No 352
>PRK09064 5-aminolevulinate synthase; Validated
Probab=33.60 E-value=70 Score=30.50 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..-|+..+++++++-|+++|+-||+|-+.-
T Consensus 189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 189 SMDGDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 334666678999999999999999998864
No 353
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=33.60 E-value=39 Score=32.55 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+. ...|...+++++++.||++|+.||.|-++-
T Consensus 153 ~P~-NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 153 TPS-NPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCC-CCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 344 557888899999999999999999998863
No 354
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=33.55 E-value=1.8e+02 Score=27.46 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=46.9
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcC----CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAG----ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LG----v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
..|.+..-.....+| +.+.+.+-.++++.++ +..|.|.|.++.... ..+|-.+ +.++++++.+
T Consensus 247 ~~V~iry~LI~GvND---s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~----~~~~~~p------s~e~v~~f~~ 313 (347)
T PRK14453 247 RKVYIAYIMLEGVND---SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT----PFKFQSS------SAGQIKQFCS 313 (347)
T ss_pred CcEEEEEEeECCCCC---CHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC----CccCCCC------CHHHHHHHHH
Confidence 455555433232222 4566666667777774 578999998776331 1122222 4788999999
Q ss_pred HHHHcCCEEEE
Q 018278 99 AFRQKGIKCLA 109 (358)
Q Consensus 99 ~~H~~Gi~Vil 109 (358)
.+.++|+.|.+
T Consensus 314 ~L~~~Gi~vti 324 (347)
T PRK14453 314 TLKSAGISVTV 324 (347)
T ss_pred HHHHCCCcEEE
Confidence 99999998863
No 355
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=33.50 E-value=70 Score=28.40 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPP 64 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~P 64 (358)
...+.+.|+.++++|++.|.|.|
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~ 36 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP 36 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC
Confidence 35567889999999999999997
No 356
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.42 E-value=1.5e+02 Score=28.06 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=38.0
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.+.+-.+.|+.+++ .|.|.|..+. ...+|..++ .+.++++.+.+.++|+.|.+
T Consensus 277 s~e~a~~La~llk~l~~-~VnLIPyn~~------~~~~~~~ps------~e~i~~f~~~l~~~gi~vtv 332 (356)
T PRK14462 277 DLKSAKKLVKLLNGIKA-KVNLILFNPH------EGSKFERPS------LEDMIKFQDYLNSKGLLCTI 332 (356)
T ss_pred CHHHHHHHHHHHhhcCc-EEEEEeCCCC------CCCCCCCCC------HHHHHHHHHHHHHCCCcEEE
Confidence 45566666677788875 8999997753 222233333 57788888888899998854
No 357
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=33.37 E-value=49 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
++++++++.+-|+++||.||.|-.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEch
Confidence 378899999999999999999998
No 358
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.35 E-value=71 Score=30.67 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
||+++-+... +++.||+..+.-|--... ......+.-.-.+- ...-..-|++++++.||++|+.||+|-.
T Consensus 113 G~t~~~~~~~---l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPs-NP~l~v~DI~~i~~~A~~~g~~vvVDNT 187 (396)
T COG0626 113 GGTYRLFEKI---LQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPS-NPLLEVPDIPAIARLAKAYGALVVVDNT 187 (396)
T ss_pred chHHHHHHHH---HHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCC-CcccccccHHHHHHHHHhcCCEEEEECC
Confidence 6776655544 355999999887743311 11234444444555 6666778899999999999999999933
No 359
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.30 E-value=1.2e+02 Score=25.45 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=41.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEE
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD 110 (358)
++.+.+.++..+.||+..|.+.|.- +... +...+ .+.|+++++.|.++|++|.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~-------------~~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR-------------YPSG-PEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT-------------ESSS-TTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc-------------cccc-cCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 6778888999999999999988642 0011 11111 457899999999999999998
No 360
>PTZ00413 lipoate synthase; Provisional
Probab=33.26 E-value=1.2e+02 Score=28.88 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=46.6
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
|=+.+.+++.+..|+++|++.+=|.-.... +.. +..| .+|=++++|+++-+.+-+.|.+-+.--.+
T Consensus 306 GET~eEvie~m~dLrelGVDivtIGQYL~P-s~~------h~~V--~~yv~P~~F~~~~~~a~~~Gf~~v~sgPl 371 (398)
T PTZ00413 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQP-TKT------RLKV--SRYAHPKEFEMWEEEAMKMGFLYCASGPL 371 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccccCC-Ccc------cCCc--eeccCHHHHHHHHHHHHHcCCceEEecCc
Confidence 347888999999999999988866332221 111 2223 46778889999999999999987654433
No 361
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=33.17 E-value=53 Score=29.43 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+.+++|++.||+.||.+++.+
T Consensus 143 ~~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 143 SDDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEE
Confidence 36789999999999999999996
No 362
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.13 E-value=47 Score=25.61 Aligned_cols=58 Identities=21% Similarity=0.044 Sum_probs=34.7
Q ss_pred hhHHHcC-CCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 50 PDLSNAG-ITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 50 ~yl~~LG-v~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+|..+| +.+.... ..+... ...-...|..-+= +.=|...+..+.++.|+++|.+||.
T Consensus 19 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~I~i-S~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 19 YLLERLAGIPVEVEA-ASEFRYRRPLLDEDTLVIAI-SQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHhcCCceEEEe-hhHhhhcCCCCCCCcEEEEE-eCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 3567776 6666544 222110 0111223322233 5568888999999999999999875
No 363
>PRK07671 cystathionine beta-lyase; Provisional
Probab=33.10 E-value=41 Score=32.01 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 82 id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+. ...|...+++++++.||++|+.||+|-++.
T Consensus 143 P~-NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 143 PT-NPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CC-CCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 44 556888999999999999999999998764
No 364
>PRK00955 hypothetical protein; Provisional
Probab=33.03 E-value=1.5e+02 Score=30.31 Aligned_cols=43 Identities=5% Similarity=-0.136 Sum_probs=33.1
Q ss_pred eEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC
Q 018278 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA 70 (358)
Q Consensus 25 v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~ 70 (358)
.+.-.|....++ =|.+.+.+-+++++++|++.+.+.+..+.++
T Consensus 479 ~I~~yfIvGfPG---ETeEDf~et~eflkel~~~~~qV~~fTP~PG 521 (620)
T PRK00955 479 YLVPYLMSSHPG---STLEDAIELAEYTKDLGYQPEQVQDFYPTPG 521 (620)
T ss_pred cEEEEEEEECCC---CCHHHHHHHHHHHHHcCCCcceeeeeecCCC
Confidence 344445444454 3789999999999999999999999888775
No 365
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=32.96 E-value=55 Score=30.60 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+++++|++.||+.||.+++.+
T Consensus 215 ~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 215 PDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 36789999999999999999985
No 366
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.94 E-value=3.2e+02 Score=25.80 Aligned_cols=73 Identities=8% Similarity=-0.021 Sum_probs=45.1
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcC-CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAG-ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LG-v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
+..|++..-..+...| +...+.+-.+.|+.+. +..|.|.|..+.+ ..+|..+ +.++++++.+.+
T Consensus 250 g~~V~ieyvLIpGvND---s~e~a~~La~~l~~l~~~~~VnLIPynp~~------~~~~~~p------s~e~i~~f~~~L 314 (348)
T PRK14467 250 GRRIMLEYVLIKGVND---SPEDALRLAQLIGKNKKKFKVNLIPFNPDP------ELPYERP------ELERVYKFQKIL 314 (348)
T ss_pred CCeEEEEEEEECCccC---CHHHHHHHHHHHhcCCCceEEEEecCCCCC------CCCCCCC------CHHHHHHHHHHH
Confidence 4455555443333322 4555556666777774 6789999977532 2233222 367788888888
Q ss_pred HHcCCEEEE
Q 018278 101 RQKGIKCLA 109 (358)
Q Consensus 101 H~~Gi~Vil 109 (358)
.++|+.|.+
T Consensus 315 ~~~gi~v~v 323 (348)
T PRK14467 315 WDNGISTFV 323 (348)
T ss_pred HHCCCcEEE
Confidence 999999854
No 367
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=32.81 E-value=40 Score=32.00 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHcCCCEEEeCCCCCCC--C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 52 LSNAGITHVWLPPPSQSV--A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 52 l~~LGv~~I~l~Pi~~~~--~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+..|++.+++..-.+.. . ...-...-+..++ ..-|...+++++++.||++|+.|++|-+
T Consensus 125 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 125 AERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAAS-NTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred HHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCC-CCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 456788887764211110 0 1122233344566 7789999999999999999999999996
No 368
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=32.78 E-value=56 Score=30.98 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+.+++|++-|+++|+-+|.|-|.-..+
T Consensus 195 ~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 195 DEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 5789999999999999999999986554
No 369
>PRK08064 cystathionine beta-lyase; Provisional
Probab=32.74 E-value=44 Score=31.98 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=49.4
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCC----CCCCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP----SQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi----~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
+++|+.....+ ++++.-+.+ .++..|++.+++... .+..-...-...-.-.+. ...|...|+++++
T Consensus 92 Gd~Vlv~~~~y------~~~~~~~~~---~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~-NptG~~~dl~~I~ 161 (390)
T PRK08064 92 GDHVLISEDVY------GGTYRMITE---VLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPS-NPLLKVTDIRGVV 161 (390)
T ss_pred CCEEEEccCcc------chHHHHHHH---HHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCcEeccHHHHH
Confidence 45677665432 344543332 356678887776431 000001111222233455 6689999999999
Q ss_pred HHHHHcCCEEEEEeec
Q 018278 98 QAFRQKGIKCLADMVI 113 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~ 113 (358)
+.||++|+.||+|-..
T Consensus 162 ~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 162 KLAKAIGCLTFVDNTF 177 (390)
T ss_pred HHHHHcCCEEEEECCC
Confidence 9999999999999663
No 370
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=32.74 E-value=76 Score=31.27 Aligned_cols=67 Identities=10% Similarity=0.286 Sum_probs=47.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
..+....+-++-+|+||+++--++=-+..--..|.. .+| + ...+=.++||++|.++||+.|+-+ .|.
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g-----~vN-~--~gl~~Y~~lid~l~~~GI~P~VTL--~H~ 117 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYG-----EVN-P--KGVEYYHRLFAECHKRHVEPFVTL--HHF 117 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCC-----CcC-H--HHHHHHHHHHHHHHHcCCEEEEEe--cCC
Confidence 467778888999999999999887544322112211 133 2 356778999999999999999875 465
No 371
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=32.62 E-value=37 Score=31.89 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
...|+..+++++++.||++|+.||.|-+.
T Consensus 179 ~~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 179 SMDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred cCCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 44577788999999999999999999986
No 372
>PRK07777 aminotransferase; Validated
Probab=32.51 E-value=51 Score=31.20 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.+++++|++.|+++|+.||.|-++.+..
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 36899999999999999999999887654
No 373
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.48 E-value=1.2e+02 Score=28.29 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=38.3
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC----CCCCCC-----HHHHHHHHHHHHHc---CCEEEEEee
Q 018278 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----ASKYGS-----QADLKSLIQAFRQK---GIKCLADMV 112 (358)
Q Consensus 49 L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id----~~~~Gt-----~~d~~~Lv~~~H~~---Gi~VilD~V 112 (358)
....++.|++.|+|. ..|||-+.-|...- ..+||. ..-..+.|++.++. ++.|.+++-
T Consensus 155 A~ra~~aGfDgVeih------~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris 224 (338)
T cd04733 155 ARLAQEAGFDGVQIH------AAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLN 224 (338)
T ss_pred HHHHHHcCCCEEEEc------hhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEc
Confidence 447789999999987 35777666555543 135654 23355667777753 578888864
No 374
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=32.43 E-value=54 Score=31.71 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeec
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFD 202 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D 202 (358)
.+++.|+.+++.+..++.++|+||+-+|
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 4688899898888888888999999998
No 375
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=32.35 E-value=54 Score=31.31 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.5
Q ss_pred CCCCC---HHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 85 SKYGS---QADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 85 ~~~Gt---~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
...|+ .++++++++.|+++|+.||.|-++.+..
T Consensus 180 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 180 NPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 34454 5889999999999999999999987664
No 376
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.35 E-value=1.3e+02 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++..++++.|+++|++.++=+.++
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3788999999999999998655554
No 377
>PRK07324 transaminase; Validated
Probab=32.20 E-value=56 Score=30.91 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++++++++.|+++|+.||.|-++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 5888999999999999999999987554
No 378
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=32.01 E-value=1.6e+02 Score=26.75 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=24.2
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCC
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPS 66 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~ 66 (358)
.+.+..++...+.+++|+++|-++|++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 568999999999999999999998865
No 379
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=31.93 E-value=97 Score=29.69 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=44.2
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
++|..|+++||+.|.|.- ... ++.- +-.++ |--+.++..+.|+.+++.+..|-+|++++.-+..
T Consensus 123 e~L~~l~~~GvnrisiGv-QS~-~~~~-----L~~l~--R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 186 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGI-QSF-NDAH-----LKALG--RIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQT 186 (394)
T ss_pred HHHHHHHHcCCCeEEEec-ccC-CHHH-----HHHhC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCC
Confidence 778888888888888752 222 1111 22233 2235678888899999999999999999876654
No 380
>PLN02656 tyrosine transaminase
Probab=31.82 E-value=48 Score=31.77 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.++++++++.|+++|+-||.|-++.+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 5899999999999999999999998764
No 381
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.82 E-value=4.3e+02 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
-.+.|++|++++|++|-++++= ++|.|..
T Consensus 80 ~i~~~~~l~~~vh~~G~~~~~Q--l~h~G~~ 108 (338)
T cd04733 80 DLEAFREWAAAAKANGALIWAQ--LNHPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHHhcCCEEEEE--ccCCCcC
Confidence 3678999999999999998765 5788765
No 382
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=31.81 E-value=36 Score=32.16 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..|+..+++++++-||++|+.||.|.+-.
T Consensus 161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred CcCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 35777788999999999999999998753
No 383
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=31.69 E-value=2.1e+02 Score=26.42 Aligned_cols=62 Identities=11% Similarity=0.240 Sum_probs=40.2
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
+.+.+.+.+..+++.|++.|=+.--..... +.+ ... -..=+.+.+++++++||++|+.|.+=
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~-----~~~--~~~-~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLS-----PGD--PPP-DTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCC-----CCC--CCc-ccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 456677788888888999987653110000 000 111 12335789999999999999987653
No 384
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=31.67 E-value=65 Score=31.62 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
++++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58899999999999999999997
No 385
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=31.63 E-value=39 Score=31.27 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=28.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+. ...|..++++++++-||++|+.|++|-+...
T Consensus 156 ~~~-~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 156 AGT-TDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred ccc-CCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 344 5678888999999999999999999988543
No 386
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=31.60 E-value=2e+02 Score=27.45 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=53.8
Q ss_pred hhcCCCCCC---------ce-EEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEe-CCCCCCCCCCCCCccccCCCC
Q 018278 15 AIFLPFTSP---------AL-LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWL-PPPSQSVAPQGYMPGRLYDLD 83 (358)
Q Consensus 15 ~~~~~~~~~---------~v-~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l-~Pi~~~~~~~gY~~~d~~~id 83 (358)
.+.|+|... +| -|+.| |.... +=||+++++. |+.+.-+.|.| .+.+-+| +-+|
T Consensus 125 is~PtW~NH~~If~~aGl~v~~Y~Yy--d~~~~-~~df~~mla~---L~~a~~~~vvLLH~CcHNP----------TG~D 188 (396)
T COG1448 125 ISDPTWPNHKAIFEAAGLEVETYPYY--DAETK-GLDFDGMLAD---LKTAPEGSVVLLHGCCHNP----------TGID 188 (396)
T ss_pred eCCCCcHhHHHHHHhcCCceeeeecc--ccccc-cccHHHHHHH---HHhCCCCCEEEEecCCCCC----------CCCC
Confidence 467888655 22 34433 33322 3456666555 45554454544 4444332 2266
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 84 ~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
+ |.++.+++++-..++|+=.++|+.+.-.+..
T Consensus 189 -~---t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G 220 (396)
T COG1448 189 -P---TEEQWQELADLIKERGLIPFFDIAYQGFADG 220 (396)
T ss_pred -C---CHHHHHHHHHHHHHcCCeeeeehhhhhhccc
Confidence 5 6889999999999999999999998776654
No 387
>PLN02368 alanine transaminase
Probab=31.59 E-value=57 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++-|+++|+-||.|-++.+..
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 57899999999999999999999988764
No 388
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.56 E-value=1.2e+02 Score=27.17 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.++.+++++.|.++||..|+=+.++.
T Consensus 128 ~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 37889999999999999995455543
No 389
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=31.44 E-value=43 Score=31.70 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+..|...+++++++-||++|+.||.|-+.
T Consensus 181 ~~tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred cCCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 44566677999999999999999999995
No 390
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.39 E-value=3e+02 Score=25.99 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
...+.+.....+...| +.+.+.+-.+.+++++ ..|.|.|..+... ..|. .+ +.+.+.++.+.++
T Consensus 260 ~~~v~iey~lI~gvND---s~ed~~~La~ll~~l~-~~VnLIPynp~~~-~ky~-----~p------s~e~l~~f~~~L~ 323 (356)
T PRK14455 260 NRRVTFEYILLGGVND---QVEHAEELADLLKGIK-CHVNLIPVNPVPE-RDYV-----RT------PKEDIFAFEDTLK 323 (356)
T ss_pred CCeEEEEEEEeCCCCC---CHHHHHHHHHHHhcCC-CcEEEEecCcCCC-CCCc-----CC------CHHHHHHHHHHHH
Confidence 3456665544333333 3455555556667776 4688888776532 2332 22 4678889999999
Q ss_pred HcCCEEEE
Q 018278 102 QKGIKCLA 109 (358)
Q Consensus 102 ~~Gi~Vil 109 (358)
++|+.|.+
T Consensus 324 ~~gi~v~i 331 (356)
T PRK14455 324 KNGVNCTI 331 (356)
T ss_pred HCCCcEEE
Confidence 99999854
No 391
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=31.33 E-value=21 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=26.6
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 77 ~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
.|+..++..+.|...+.+++++.|+++||.++.=
T Consensus 19 ~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h 52 (111)
T PF13378_consen 19 VDIVQIDPTRCGGITEALRIAALAEAHGIPVMPH 52 (111)
T ss_dssp CSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEB
T ss_pred CCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEec
Confidence 3555566567799999999999999999997653
No 392
>PRK06348 aspartate aminotransferase; Provisional
Probab=31.27 E-value=56 Score=30.97 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 57899999999999999999999887664
No 393
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=31.22 E-value=43 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+..|+.++++++++-|+++|+-||.|-+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 445777889999999999999999999974
No 394
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.18 E-value=56 Score=25.24 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.-|...+..+.++.|+++|++||.
T Consensus 55 S~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 55 SHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred eCCCCChHHHHHHHHHHHcCCeEEE
Confidence 6668899999999999999999887
No 395
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=31.15 E-value=53 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 84 ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 84 ~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
+.--|+.+-.++||++||..|+.-++-
T Consensus 237 PTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 237 PTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ccchhhHHHHHHHHHHHHhcCceeEee
Confidence 344589999999999999999987765
No 396
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=31.06 E-value=1.1e+02 Score=29.63 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=42.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+.+.+-..-|+.+|||++-|+-+.-... .-|- |+ ..| ..+.++|.+..+..||||.|-+-
T Consensus 181 n~qR~kDYAR~laSiGINg~v~NNVNvk~~-e~~l------it-~~f--l~k~aklAdiFR~YGIK~yLsin 242 (684)
T COG3661 181 NDQRMKDYARALASIGINGTVLNNVNVKKA-ESYL------IT-APF--LAKAAKLADIFRPYGIKVYLSIN 242 (684)
T ss_pred chHHHHHHHHHHhhcCcceEEecccccchh-hhhe------ec-hHh--HHHHHHHHHHhhhccceEEEEec
Confidence 345666666677899999999987654321 1232 33 222 45578999999999999998753
No 397
>PRK06108 aspartate aminotransferase; Provisional
Probab=31.04 E-value=49 Score=31.15 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+-||.|-++-+..
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 204 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLY 204 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhc
Confidence 68899999999999999999998877654
No 398
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.98 E-value=45 Score=31.87 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=38.9
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++.+|++.+++..--. ..-...=...-.-.+. ...|...+++++++.||++|+.||.|-+.
T Consensus 120 ~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~-NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 120 IFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPS-NPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCC-CCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 45678888777643100 0000000111112345 56788889999999999999999999875
No 399
>PRK06225 aspartate aminotransferase; Provisional
Probab=30.97 E-value=48 Score=31.31 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+.++++++++.|+++|+.+|.|-++.
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHH
Confidence 37899999999999999999998864
No 400
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.83 E-value=84 Score=30.96 Aligned_cols=67 Identities=10% Similarity=0.246 Sum_probs=46.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
..+....+-++-+|+||+++--++=-+.---..|.. .++ -...+=.++||++|.++||+.|+-+ .|.
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~-----~~N---~~gl~~Y~~lid~l~~~GI~P~VTL--~H~ 116 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-----EVN---EKGVEFYHKLFAECHKRHVEPFVTL--HHF 116 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCC-----CcC---HHHHHHHHHHHHHHHHcCCEEEEec--cCC
Confidence 467778888999999999999887533322122221 133 1245668999999999999999764 565
No 401
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=30.59 E-value=38 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.5
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~ 72 (358)
-..+.+.++.+.+.|++.|.+.|.+=.++.|
T Consensus 43 ~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h 73 (101)
T cd03416 43 EPSLAEALDELAAQGATRIVVVPLFLLAGGH 73 (101)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeeEeCCCcc
Confidence 3456667888888999999999998886543
No 402
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=30.55 E-value=53 Score=30.75 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 57899999999999999999999886554
No 403
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=30.46 E-value=43 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=27.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++ ...|...+++++++.|+++|+.|++|...
T Consensus 147 ~~~-~~tG~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 147 HVS-NVLGTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred Ccc-cccCCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 444 55788888999999999999999999753
No 404
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=30.45 E-value=49 Score=31.65 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 82 id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+. ...|...+++++++-||++|+.||+|-..-
T Consensus 153 p~-Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 153 PA-NPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CC-CCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 44 556888889999999999999999998753
No 405
>PRK05764 aspartate aminotransferase; Provisional
Probab=30.45 E-value=57 Score=30.88 Aligned_cols=27 Identities=15% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
.++++++++.||++|+.||.|-++...
T Consensus 183 ~~~~~~l~~~a~~~~~~ii~De~y~~~ 209 (393)
T PRK05764 183 PEELEAIADVAVEHDIWVLSDEIYEKL 209 (393)
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccce
Confidence 689999999999999999999876543
No 406
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=30.43 E-value=1.6e+02 Score=27.90 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=39.6
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
|++.+.+.+. .-.+.+|++.|++ ++ .|. .+-+.+.++++.+-|+++|+-+|+|-|.-..+.
T Consensus 166 d~~~le~~l~---~~~~~~v~~ep~~-~~--~G~-----------~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~ 226 (400)
T PTZ00125 166 DVEALEKLLQ---DPNVAAFIVEPIQ-GE--AGV-----------IVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGR 226 (400)
T ss_pred CHHHHHHHhC---CCCeEEEEEcCcc-CC--CCC-----------ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 4555554443 1247778887763 22 221 111345699999999999999999999865543
No 407
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.42 E-value=47 Score=32.35 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=48.8
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC------CCCCCccccCCCCCCCCCCHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
.++|+.....+ +++..-+.. .++..|++.+++-+- ... ...=...-.-.+. ...|...|+++
T Consensus 103 Gd~Vi~~~~~y------~~t~~~~~~---~l~~~Gi~v~~vd~~--d~~~l~~~i~~~TklV~~e~~~-np~g~v~Di~~ 170 (433)
T PRK08134 103 GSHIVASSALY------GGSHNLLHY---TLRRFGIETTFVKPG--DIDGWRAAIRPNTRLLFGETLG-NPGLEVLDIPT 170 (433)
T ss_pred CCEEEEeCCcc------HHHHHHHHH---HHhhCCeEEEEECCC--CHHHHHHhcCCCCeEEEEECCC-cccCcccCHHH
Confidence 45676665532 233333332 367899988888752 100 0011111123344 55677789999
Q ss_pred HHHHHHHcCCEEEEEeec
Q 018278 96 LIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~ 113 (358)
+++.||++|+.||+|-..
T Consensus 171 I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 171 VAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHHHHcCCEEEEECCC
Confidence 999999999999999763
No 408
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.37 E-value=4e+02 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |++....++...++++.
T Consensus 141 ~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~~~~~ 178 (262)
T cd07948 141 VDLLRVYRAVDK-LGVNRVGIADTVGIATPRQVYELVRT 178 (262)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCcCCCCCHHHHHHHHHH
Confidence 346666777666 89998887 66666677766666544
No 409
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.35 E-value=47 Score=31.94 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=40.8
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++..|++.+++.+.-. ..-...-...-.-.+. ...|..-|++++++.||++|+.||+|-..-
T Consensus 129 ~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~-Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 129 ILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPS-NPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCC-CCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 34567888887754200 0001111222223455 667888899999999999999999998754
No 410
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=30.35 E-value=61 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeec
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
++++++++.||+.|+++|+|...
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEec
Confidence 48899999999999999997543
No 411
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=30.33 E-value=44 Score=31.27 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 80 ~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..++ ..-|...+++++++.||++|+.|++|.+
T Consensus 136 ~~~~-~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 136 VHCE-TTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred Eeec-CCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 3456 7789999999999999999999999975
No 412
>PRK02227 hypothetical protein; Provisional
Probab=30.30 E-value=54 Score=28.97 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=34.8
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+-++.+++.|+..+-| .+....|=...|+. +.++|+++|++||++|+..=|
T Consensus 135 ~l~~~a~~aGf~g~Ml----DTa~Kdg~~Lfd~l--------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 135 SLPAIAADAGFDGAML----DTAIKDGKSLFDHM--------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHcCCCEEEE----ecccCCCcchHhhC--------CHHHHHHHHHHHHHcccHhHh
Confidence 4466778899998887 22222333333333 466999999999999997644
No 413
>PTZ00376 aspartate aminotransferase; Provisional
Probab=30.29 E-value=55 Score=31.32 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 588999999999999999999999987754
No 414
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=30.24 E-value=35 Score=33.45 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=41.6
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
..+.-..+-++.+|+||+++.-++--+.---..| . --.+| --..+=.++||++|.++||+.|+.+ .|.
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g--~--~g~~n---~~~~~~Y~~~i~~l~~~gi~P~vtL--~H~ 122 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDG--F--EGKVN---EEGLDFYRDLIDELLENGIEPIVTL--YHF 122 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTS--S--SSSS----HHHHHHHHHHHHHHHHTT-EEEEEE--ESS
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecc--c--ccccC---HhHhhhhHHHHHHHHhhccceeeee--eec
Confidence 3466677889999999999998865322111111 0 00122 1135568999999999999999875 454
No 415
>PLN02591 tryptophan synthase
Probab=30.23 E-value=1.7e+02 Score=26.08 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
|+.+-+..+++.|++.|-++ | = ..++..++++.|+++||..|+=+.++..
T Consensus 94 G~~~F~~~~~~aGv~Gviip-------------------D-L---P~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP-------------------D-L---PLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC-------------------C-C---CHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 55566666677777766655 2 1 1378899999999999999995546543
No 416
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=30.18 E-value=38 Score=31.36 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.-|+..+++++++.||++|+.||.|-+.
T Consensus 158 ~~G~~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 158 MDGDIAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CCCCCcCHHHHHHHHHHcCcEEEEECcc
Confidence 4466778999999999999999999985
No 417
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=30.16 E-value=86 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
|+.+...+.|+.+++.|++|.+-+|++..
T Consensus 129 g~f~~v~~~i~~l~~~g~~v~v~~vv~~~ 157 (358)
T TIGR02109 129 NAFEQKLAMARAVKAAGLPLTLNFVIHRH 157 (358)
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEEeccC
Confidence 45566677778889999999888887643
No 418
>PRK07683 aminotransferase A; Validated
Probab=30.14 E-value=57 Score=30.99 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++++++++.||++|+-||.|-++-..
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 4799999999999999999999888654
No 419
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.13 E-value=1.6e+02 Score=27.23 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=36.9
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC----CCCCCC-----HHHHHHHHHHHHHc---CCEEEEEeecc
Q 018278 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----ASKYGS-----QADLKSLIQAFRQK---GIKCLADMVIN 114 (358)
Q Consensus 49 L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id----~~~~Gt-----~~d~~~Lv~~~H~~---Gi~VilD~V~N 114 (358)
....++.|++.|+|.. .|||-..-|.... ...||. ..-+.+.|+++++. ++.|.+++-..
T Consensus 147 A~~a~~aGfDgveih~------~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~ 218 (327)
T cd02803 147 ARRAKEAGFDGVEIHG------AHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHcCCCEEEEcc------hhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechh
Confidence 4467889999999974 4777433332221 145664 23345667777664 67788876553
No 420
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=30.11 E-value=30 Score=33.22 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (358)
+.|||..=.++|=.=|--.|+|+|++-.+...- ..|..|+ +|- +...+|+++.
T Consensus 84 s~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv---~afe~wr--------~~A----------------d~k~cCDygl 136 (522)
T KOG2584|consen 84 SVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLV---EAFEKWR--------EWA----------------DPKVCCDYGL 136 (522)
T ss_pred chhhhhcccHHHhcCCceEEEEEecCCCCchHH---HHHHHHH--------hhc----------------CCceeeeeee
Confidence 378898888999999999999999987633210 1111111 111 1222344444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 169 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
-.++-+.++.|.++|-- ++.++||-+|-+++|.
T Consensus 137 hv~It~W~~~v~eem~~----l~~ekGvnsF~~fmay 169 (522)
T KOG2584|consen 137 HVGITWWSPSVKEEMEI----LVKEKGVNSFKFFMAY 169 (522)
T ss_pred eEeeeecCcchHHHHHH----HhhhcCcceEEeeeee
Confidence 44566666777666543 3366999999999985
No 421
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=30.10 E-value=57 Score=30.55 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++++++++.|+++|+.||.|-++-+.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~ 187 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDF 187 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhcc
Confidence 4788999999999999999999987554
No 422
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=30.08 E-value=66 Score=29.71 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++ +..|+..+++++++.||++|+-+|+|-+.
T Consensus 133 ~~~-~~~G~~~~~~~i~~l~~~~~~~livD~~~ 164 (355)
T TIGR03301 133 HHE-TTTGILNPLEAIAKVARSHGAVLIVDAMS 164 (355)
T ss_pred ecC-CcccchhHHHHHHHHHHHcCCEEEEEecc
Confidence 355 67799999999999999999999999753
No 423
>PRK07582 cystathionine gamma-lyase; Validated
Probab=30.04 E-value=52 Score=31.11 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=38.3
Q ss_pred hHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++.+|++.+++..--.. .....-...-.-.+. ..-|...+++++++.||++|+.||+|-+.
T Consensus 109 ~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le~p~-NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 109 YLAPLGVTVREAPTAGMAEAALAGADLVLAETPS-NPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred HHhcCeEEEEEECCCChHHHhccCceEEEEECCC-CCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 456788888776431100 000011111112344 44577889999999999999999999875
No 424
>PHA00450 host dGTPase inhibitor
Probab=30.04 E-value=85 Score=22.48 Aligned_cols=29 Identities=7% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
|...+||+.++.+.++.+.||.+--..+.
T Consensus 7 GNL~afKaA~~RL~q~D~aVi~e~~~~~~ 35 (85)
T PHA00450 7 GNLNAFKAATARLFEHDVAVIVEEFYYEN 35 (85)
T ss_pred CcHHHHHHHHHHHHhcceeEEEeehhccc
Confidence 78999999999999999999988554433
No 425
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.93 E-value=3.9e+02 Score=25.18 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++..++ .|+|-+++ |.+....+.-..++++.
T Consensus 197 ~~l~~~~~~~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~ 234 (347)
T PLN02746 197 SKVAYVAKELYD-MGCYEISLGDTIGVGTPGTVVPMLEA 234 (347)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCcCCcCHHHHHHHHHH
Confidence 568888888887 99999887 67766667666666544
No 426
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=29.87 E-value=68 Score=27.94 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=49.6
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC----------------CCC------------CCCccccCCCCCCCCCCHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV----------------APQ------------GYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----------------~~~------------gY~~~d~~~id~~~~Gt~~d 92 (358)
+.+...+.++.|+++++..|+ -|+.... .+. .-...|...++..+.|+..+
T Consensus 106 ~~~~a~~~~~~l~~~~i~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~ 184 (229)
T cd00308 106 TPKEAIRLIRALEKYGLAWIE-EPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTE 184 (229)
T ss_pred CHHHHHHHHHHhhhcCCCeEE-CCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 467778888888899998888 5654321 000 01245556676667799999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 018278 93 LKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~Vil 109 (358)
.+++++.|+++|++++.
T Consensus 185 ~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 185 SRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHHHHcCCEEee
Confidence 99999999999998876
No 427
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=29.78 E-value=1.1e+02 Score=26.31 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=41.7
Q ss_pred HHHHhhhhhHHHcCCC-EEEeCCCCCCCCCCCC----CccccCCCCCCCCCC----------HHHHHHHHHHHHHcCCEE
Q 018278 43 NSLKNSIPDLSNAGIT-HVWLPPPSQSVAPQGY----MPGRLYDLDASKYGS----------QADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~-~I~l~Pi~~~~~~~gY----~~~d~~~id~~~~Gt----------~~d~~~Lv~~~H~~Gi~V 107 (358)
+.+.+.+.++|+.|+. .|-|.|-.+-.....| +..-...++ |-||. .+++++++.+.+ .++.+
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~-PG~~Gq~f~~~~~~KI~~l~~~~~~~~-~~~~I 169 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVE-PGFGGQKFIPEVLEKIRELRKLIPENG-LDFEI 169 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS--TTTSSB--HGGHHHHHHHHHHHHHHHT-CGSEE
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEec-CCCCcccccHHHHHHHHHHHHHHHhcC-CceEE
Confidence 4556778999999998 7888885443221112 334467788 88886 334444444333 67888
Q ss_pred EEEeecc
Q 018278 108 LADMVIN 114 (358)
Q Consensus 108 ilD~V~N 114 (358)
.+|-=+|
T Consensus 170 ~vDGGI~ 176 (201)
T PF00834_consen 170 EVDGGIN 176 (201)
T ss_dssp EEESSES
T ss_pred EEECCCC
Confidence 8885443
No 428
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=29.73 E-value=81 Score=29.16 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=49.1
Q ss_pred CCCceEEEeeecCCCCC----------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC--CCCCCCCccccCCCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNK----------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYDLDASKYG 88 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~----------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~--~~~~gY~~~d~~~id~~~~G 88 (358)
..+..||-.|--+..+. ..=.+..+.+.++.+.++||.+|-|-|+.+. .+..|-.. ++.+ |
T Consensus 25 ~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a---~~~~----g 97 (324)
T PF00490_consen 25 SPSDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEA---YNPD----G 97 (324)
T ss_dssp -GGGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGG---GSTT----S
T ss_pred CHHHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcc---cCCC----C
Confidence 34577888884333321 1235788999999999999999999988533 22333222 1222 2
Q ss_pred CHHHHHHHHHHHHH--cCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQ--KGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~--~Gi~VilD~V~NH~ 116 (358)
- .++.|+++++ -.|-||.|+-+-..
T Consensus 98 ~---v~~air~iK~~~pdl~vi~Dvclc~Y 124 (324)
T PF00490_consen 98 L---VQRAIRAIKKAFPDLLVITDVCLCEY 124 (324)
T ss_dssp H---HHHHHHHHHHHSTTSEEEEEE-STTT
T ss_pred h---HHHHHHHHHHhCCCcEEEEecccccc
Confidence 2 2444444444 47999999987543
No 429
>PRK08175 aminotransferase; Validated
Probab=29.62 E-value=58 Score=30.99 Aligned_cols=28 Identities=4% Similarity=0.090 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.++++++++.|+++|+.||.|-++-+.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l 209 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADI 209 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence 5789999999999999999999887654
No 430
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=29.58 E-value=41 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
...|+..+++++.+.||++|+.|++|-+.
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~ 190 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAF 190 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecc
Confidence 56799999999999999999999999964
No 431
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.54 E-value=49 Score=31.72 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+- ..+.+.-|++++++-||++|+-||+|-.
T Consensus 170 SPs-NPll~v~DI~~l~~la~~~g~~vvVDnT 200 (409)
T KOG0053|consen 170 SPS-NPLLKVPDIEKLARLAHKYGFLVVVDNT 200 (409)
T ss_pred CCC-CCccccccHHHHHHHHhhCCCEEEEeCC
Confidence 344 5667777899999999999999999943
No 432
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=29.53 E-value=44 Score=31.92 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=29.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 79 ~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+..++ ..-|+..+++++++.||++|+.|++|-+-
T Consensus 170 l~~~~-n~tG~~~~~~~i~~~~~~~~~~vivD~a~ 203 (406)
T PRK09295 170 ITHVS-NVLGTENPLAEMIALAHQHGAKVLVDGAQ 203 (406)
T ss_pred Eecch-hcccccCCHHHHHHHHHHcCCEEEEEccc
Confidence 34556 77799999999999999999999999873
No 433
>PRK05957 aspartate aminotransferase; Provisional
Probab=29.51 E-value=61 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 85 SKYG---SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 85 ~~~G---t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
...| +.++++++++.||++|+.||.|-++-+..
T Consensus 171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 3456 57899999999999999999999887653
No 434
>PRK09082 methionine aminotransferase; Validated
Probab=29.51 E-value=51 Score=31.25 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=27.7
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 85 SKYG---SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 85 ~~~G---t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
...| +.++++++++-|+++|+.||.|-++.+..
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 174 NPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 3445 46999999999999999999999986653
No 435
>PRK05839 hypothetical protein; Provisional
Probab=29.39 E-value=55 Score=30.92 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDECYSEIY 201 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence 47999999999999999999999988764
No 436
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=29.30 E-value=5e+02 Score=24.64 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
.+.|+++++++|+.|-++++= ++|.|..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQ--L~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQ--LWHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEE--eccCccc
Confidence 678999999999999998875 6899865
No 437
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=29.29 E-value=58 Score=30.25 Aligned_cols=66 Identities=11% Similarity=0.205 Sum_probs=46.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCC-----------------CCC-----------CCCccccCCCCCCCCCCHHHH
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-----------------APQ-----------GYMPGRLYDLDASKYGSQADL 93 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----------------~~~-----------gY~~~d~~~id~~~~Gt~~d~ 93 (358)
.+.+ ..+..|.++++..|+ -|+.... +-. .-...|...++..+.|+..++
T Consensus 186 ~~~a-~~~~~l~~~~~~~iE-eP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~ 263 (324)
T TIGR01928 186 LQDF-PRLKELDRYQLLYIE-EPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEV 263 (324)
T ss_pred HHHH-HHHHHHhhCCCcEEE-CCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHH
Confidence 3443 457788888888887 5554210 000 123456666776677999999
Q ss_pred HHHHHHHHHcCCEEEE
Q 018278 94 KSLIQAFRQKGIKCLA 109 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~Vil 109 (358)
+++++.|+++|++|++
T Consensus 264 ~~~~~~A~~~gi~~~~ 279 (324)
T TIGR01928 264 QKAIETCREHGAKVWI 279 (324)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 9999999999999986
No 438
>PRK07503 methionine gamma-lyase; Provisional
Probab=29.07 E-value=50 Score=31.76 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=38.9
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.++..|++.+++...-. ..-...-...-.-.+. ...|...+++++++.||++|+.||.|-..-
T Consensus 124 ~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~-NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 124 GLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPA-NPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred HHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCC-CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 35567887777643200 0001111122122344 556888889999999999999999998764
No 439
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.06 E-value=2e+02 Score=27.13 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=49.6
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC-----------------C--CCC----------CCccccCCCCCCCCCCHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-----------------A--PQG----------YMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----------------~--~~g----------Y~~~d~~~id~~~~Gt~~ 91 (358)
+++..++.+..|+++|+..|+ -|+.... + -++ -...|...+|..+.|+..
T Consensus 201 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit 279 (368)
T cd03329 201 SRADALRLGRALEELGFFWYE-DPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGIT 279 (368)
T ss_pred CHHHHHHHHHHhhhcCCCeEe-CCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 577778888899999988777 4553211 0 111 124667777755569999
Q ss_pred HHHHHHHHHHHcCCEEEE
Q 018278 92 DLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+++++.|+++|++++.
T Consensus 280 ~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 280 GAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 999999999999999976
No 440
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=29.02 E-value=46 Score=31.69 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=41.7
Q ss_pred hHHHcCCCEEEeCCCCCCC-C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
..+..|+..+++..-.... . ...-...-+..++ ..-|...+++++++.||++|+.|++|.+-
T Consensus 129 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~-n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 129 VAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMS-NVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred HHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCc-ccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 3466798888875421100 0 0111222245566 77788999999999999999999999985
No 441
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=28.97 E-value=83 Score=29.83 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
|+.+...+-++.+++.|++|.+-+|++-.
T Consensus 138 g~f~~~~~~i~~l~~~g~~v~i~~vv~~~ 166 (378)
T PRK05301 138 GAFAKKLAVARLVKAHGYPLTLNAVIHRH 166 (378)
T ss_pred chHHHHHHHHHHHHHCCCceEEEEEeecC
Confidence 67788888889999999999888887543
No 442
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.97 E-value=1.8e+02 Score=26.17 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=47.0
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCC-------------CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-------------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-------------~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
.+.+.+.++.|+++|+++|-++=---+. ...|+.+.=+...- . =+..+++..+..+|+.||+=|
T Consensus 14 ~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-~--~n~~~l~~~L~~~~~~Gi~nv 90 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-G--ATREEIREILREYRELGIRHI 90 (272)
T ss_pred HHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-C--CCHHHHHHHHHHHHHCCCCEE
Confidence 6889999999999999999985311110 12477766444433 3 378899999999999999855
Q ss_pred E
Q 018278 109 A 109 (358)
Q Consensus 109 l 109 (358)
|
T Consensus 91 L 91 (272)
T TIGR00676 91 L 91 (272)
T ss_pred E
Confidence 5
No 443
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=28.91 E-value=40 Score=33.02 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 89 SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
..-+++++++.||++|+.||+|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 56789999999999999999995
No 444
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=28.89 E-value=3.6e+02 Score=24.10 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=44.9
Q ss_pred CCCCCCC--CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHH---HHHHHHHHHHc-CCE
Q 018278 33 ESSNKAG--GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD---LKSLIQAFRQK-GIK 106 (358)
Q Consensus 33 ~~~~~~~--G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d---~~~Lv~~~H~~-Gi~ 106 (358)
||+-|++ -+.+.+.++.....+-|.+.|=+......++ . ......+| ++.+|+++++. ++.
T Consensus 11 dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~---~----------~~i~~~~E~~rl~~~v~~~~~~~~~p 77 (257)
T TIGR01496 11 DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG---A----------DRVSPEEELNRVVPVIKALRDQPDVP 77 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC---C----------CCCCHHHHHHHHHHHHHHHHhcCCCe
Confidence 6666654 2457888888888899999999954322221 1 11122345 78888999988 999
Q ss_pred EEEEe
Q 018278 107 CLADM 111 (358)
Q Consensus 107 VilD~ 111 (358)
|.+|-
T Consensus 78 lsiDT 82 (257)
T TIGR01496 78 ISVDT 82 (257)
T ss_pred EEEeC
Confidence 98885
No 445
>PRK06207 aspartate aminotransferase; Provisional
Probab=28.86 E-value=67 Score=30.77 Aligned_cols=29 Identities=14% Similarity=0.246 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.+++++|++.|+++|+-||.|-++....
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~De~Y~~~~ 224 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIVDQLYSRLL 224 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 47899999999999999999999987653
No 446
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=28.62 E-value=43 Score=26.10 Aligned_cols=42 Identities=29% Similarity=0.523 Sum_probs=30.6
Q ss_pred hhhhhcCCCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCC
Q 018278 12 FLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP 64 (358)
Q Consensus 12 ~~~~~~~~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~P 64 (358)
++..+.-.|.++-.+.|.|.-.+. +.++.|+.+||..||+-|
T Consensus 15 ~V~~~~~~w~~~pfl~~~f~I~s~-----------~~I~~L~~~gi~~V~Id~ 56 (128)
T PF11871_consen 15 YVSRLDRSWLEHPFLFQGFLIKSQ-----------ADIEKLRRLGIQEVYIDP 56 (128)
T ss_pred EEEecCCCccCCCeeeeceeECCH-----------HHHHHHHHCCCcEEEEEC
Confidence 333444578888888898863322 457789999999999965
No 447
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=28.61 E-value=55 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCC
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPP 64 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~P 64 (358)
.||.+.++++|..++++||+.+.|.+
T Consensus 303 VGtpe~Va~~l~~~~~~Gv~~~~L~~ 328 (346)
T TIGR03565 303 VGDPETVAARIREYQDLGIDTFILSG 328 (346)
T ss_pred eCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 59999999999999999999999984
No 448
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=28.59 E-value=1.5e+02 Score=26.77 Aligned_cols=52 Identities=13% Similarity=-0.107 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccC
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWD 230 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~ 230 (358)
.+.++++|.+-+-.|++.||=|=-=+=.-..+....++.++... .++.|...
T Consensus 180 v~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~g---~i~~e~~~ 231 (275)
T PF12683_consen 180 VAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEYG---GIFPEADL 231 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH-----BB---SS
T ss_pred cHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHcC---CEEEeCCC
Confidence 35799999999999999999764333222223334555555431 34555543
No 449
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=28.54 E-value=52 Score=31.05 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+. ..-|+..+++++++.||++|+.+++|-+--
T Consensus 151 ~v~-s~~G~i~pl~eI~~l~~~~~~~livDea~~ 183 (370)
T PRK05937 151 SVY-SFKGTLAPLEQIIALSKKYHAHLIVDEAHA 183 (370)
T ss_pred cCC-CCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 344 556777779999999999999999998764
No 450
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=28.46 E-value=65 Score=31.57 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q 018278 90 QADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+++++++.+-|+++||+|++|-
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~Da 218 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDA 218 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEEC
Confidence 7899999999999999999995
No 451
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.46 E-value=55 Score=31.80 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=41.0
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++..|++.+++.+.-. ..-...-...-.-.+. ...|..-+++++++.||++|+.||.|-+.
T Consensus 123 ~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~-NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 123 TLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIG-NPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred HHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCC-CCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 35678998888854210 0001111222223455 66788889999999999999999999874
No 452
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=28.43 E-value=48 Score=31.90 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 79 ~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+..+. ..-|+..+++++++.||++|+.|++|.+.
T Consensus 179 i~~~~-n~tG~~~~~~~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 179 THHVS-NVLGSILPVEDIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred EeCcc-ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 44566 77899999999999999999999999874
No 453
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.43 E-value=64 Score=26.83 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=37.1
Q ss_pred hhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 50 PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 50 ~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
..|..+|.++..+...... .-...|..-+= +.-|...+..++++.||++|++||.
T Consensus 50 ~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~i-S~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP----SIKKGDLLIAI-SGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCcccC----CCCCCCEEEEE-eCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3578899999887653211 11122222222 4558889999999999999999975
No 454
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=28.39 E-value=53 Score=31.26 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCC----CCCCCCCCccccCCCCCCCCCCHHHHHHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSL 96 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~~d~~~L 96 (358)
+.++|+.....+ ++++.-+.. .++..|+...++.+.-. ..-...-...-.-.+. ...|...+++++
T Consensus 87 pGd~Vi~~~~~y------~~t~~~~~~---~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~-Nptg~~~di~~I 156 (380)
T PRK06176 87 SGDHVLLGDDVY------GGTFRLFDK---VLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPS-NPLLKITDLAQC 156 (380)
T ss_pred CCCEEEEcCCCh------hHHHHHHHH---HHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCC-CCCceecCHHHH
Confidence 356676653321 344433322 36778888777644210 0001111112122345 567888889999
Q ss_pred HHHHHHcCCEEEEEeecc
Q 018278 97 IQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 97 v~~~H~~Gi~VilD~V~N 114 (358)
++-||++|+.||+|-+.-
T Consensus 157 ~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 157 ASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHHHcCCEEEEECCcc
Confidence 999999999999997753
No 455
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=28.37 E-value=1.3e+02 Score=27.90 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=43.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
..+.+-.++|+.+.++|+..|-|+ +...+..|-... -. ..-|=.+.=+++|++++++|| |+|+ -|++..
T Consensus 110 ~~l~~~~~~l~~~~~lGvR~i~Lt--~n~~N~~a~g~~----~~-~~~GLt~~G~~vv~~mn~lGm--iiDv--SH~s~~ 178 (309)
T cd01301 110 HALGGDLALLRLLYRLGVRYLGLT--WNGDNKFADGCG----EK-RGGGLTPFGKELVREMNRLGI--IIDL--SHLSER 178 (309)
T ss_pred ccccCCHHHHHHHHHcCCeEEEee--ecCCCccccCCC----CC-CCCCCCHHHHHHHHHHHHcCC--EEEc--CCCCHH
Confidence 345556789999999999888766 443333222111 12 233445566899999999887 5563 577654
No 456
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=28.33 E-value=43 Score=31.00 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..+|...+++++++-|+++|+.||.|-+-.
T Consensus 114 ~~~G~~~~~~~i~~l~~~~~i~li~D~a~~ 143 (352)
T cd00616 114 HLYGNPADMDAIMAIAKRHGLPVIEDAAQA 143 (352)
T ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 347888889999999999999999998743
No 457
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=28.27 E-value=95 Score=28.81 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
.++-.+.++.||+.||++-.++.+.| +.
T Consensus 148 ~~~~l~~i~~a~~~Gi~~~s~~i~G~-gE 175 (322)
T TIGR03550 148 PAVRLETIEDAGRLKIPFTTGILIGI-GE 175 (322)
T ss_pred HHHHHHHHHHHHHcCCCccceeeEeC-CC
Confidence 35678999999999999999999998 44
No 458
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=28.22 E-value=83 Score=23.98 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~ 72 (358)
.+.+.|+.+++.|++.|.+.|.+=+++.|
T Consensus 46 ~~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 46 SLPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 46677777888999999999998876543
No 459
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.22 E-value=3.9e+02 Score=25.10 Aligned_cols=69 Identities=17% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
+++.....++=|+.-|..-...-++...++. .. ..+. .. .-.+.+++|++++|+.|-++++= ++|.|..
T Consensus 35 ~~~~y~~rA~gG~glii~~~~~v~~~~~~~~-~~-~~~~-~~-~~i~~~~~l~~~vh~~g~~~~~Q--L~h~G~~ 103 (353)
T cd02930 35 LAAFYAERARGGVGLIVTGGFAPNEAGKLGP-GG-PVLN-SP-RQAAGHRLITDAVHAEGGKIALQ--ILHAGRY 103 (353)
T ss_pred HHHHHHHHhcCCceEEEEeeEEeCCcccCCC-CC-cccC-CH-HHHHHHHHHHHHHHHcCCEEEee--ccCCCCC
Confidence 3333334444577777665544333323321 10 1122 10 24788999999999999998876 4688765
No 460
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.22 E-value=2e+02 Score=25.94 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=37.1
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
.+.+..++...+.+++|+++|-++|++ |+.. + +.+++.+..++..+ ++.||+=
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~------------y~~~--~---~~~~i~~yf~~v~~-~lpv~iY 127 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPY------------YFPG--I---PEEWLIKYFTDISS-PYPTFIY 127 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCc------------CCCC--C---CHHHHHHHHHHHHh-cCCEEEE
Confidence 468999999999999999999998865 1111 0 23555555555555 7777664
No 461
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=28.15 E-value=61 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii~De~y~~l~ 210 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVCHDNAYSEIT 210 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence 47899999999999999999999987553
No 462
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=28.10 E-value=49 Score=31.21 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=44.4
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCC--C--------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV--A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~--------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.....-...++..|+..+++. +-+.. . .......-...+. ...|+..+++++.+.||++|+.|++|.
T Consensus 96 ~~s~~~~~~~~~~~G~~v~~v~-~~~~g~~~~~~l~~~i~~~~~lv~i~~~~-n~tG~~~~~~~I~~l~~~~g~~vivD~ 173 (379)
T TIGR03402 96 HPAVLSLCQHLEKQGYKVTYLP-VDEEGRLDLEELRAAITDDTALVSVMWAN-NETGTIFPIEEIGEIAKERGALFHTDA 173 (379)
T ss_pred cHHHHHHHHHHHHcCCEEEEEc-cCCCCcCCHHHHHHhcCCCcEEEEEEccc-CCeeecccHHHHHHHHHHcCCEEEEEC
Confidence 3444444455666898887764 22110 0 1112222233445 667889999999999999999999998
Q ss_pred ec
Q 018278 112 VI 113 (358)
Q Consensus 112 V~ 113 (358)
+-
T Consensus 174 ~~ 175 (379)
T TIGR03402 174 VQ 175 (379)
T ss_pred cc
Confidence 64
No 463
>PRK05926 hypothetical protein; Provisional
Probab=28.03 E-value=68 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
|.--|.++..+.++.||+.||++-.=+++.|.-
T Consensus 201 p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gE 233 (370)
T PRK05926 201 PGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRE 233 (370)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEeCCC
Confidence 444467889999999999999999888888763
No 464
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=27.95 E-value=69 Score=30.75 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEVYGHIV 216 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 47899999999999999999999988764
No 465
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=27.94 E-value=50 Score=31.42 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=28.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 79 ~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+..+. ..-|...+++++++.||++|+.|++|.+.
T Consensus 165 ~~~~~-~~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 165 ITHVS-NVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198 (403)
T ss_pred EEccc-ccccccCCHHHHHHHHHHcCCEEEEEchh
Confidence 34455 66789999999999999999999999864
No 466
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.87 E-value=2.3e+02 Score=25.54 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=41.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+.+.+....||++|+..+... .++..+. +. +--| ..+.++.|.+.|++.||.++-++
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~-~~kpRTs----------~~-s~~G~g~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGG-AFKPRTS----------PY-SFQGLGEEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-eecCCCC----------CC-ccCCcHHHHHHHHHHHHHHcCCCEEEee
Confidence 46677778889999999866544 3332221 22 1112 27889999999999999999875
No 467
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.53 E-value=72 Score=24.53 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=42.6
Q ss_pred CCchHHHHhhhh-hHHHcCCCEEEeCCCCCCC-C-CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 018278 39 GGWYNSLKNSIP-DLSNAGITHVWLPPPSQSV-A-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 39 ~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~~~~-~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~V 107 (358)
.|+=..+...+. +|+++|.......+..+.. + -......|..-+= +.=|...++.++++.|+++|.+|
T Consensus 13 ~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~i-s~sg~~~~~~~~~~~ak~~g~~v 83 (131)
T PF01380_consen 13 SGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIII-SYSGETRELIELLRFAKERGAPV 83 (131)
T ss_dssp STHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEE-ESSSTTHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEee-eccccchhhhhhhHHHHhcCCeE
Confidence 366666777665 6778888777765543311 1 1112222322222 34477899999999999999999
No 468
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.45 E-value=1.4e+02 Score=19.70 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=37.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
+-+..|++.|++-+.+....... ...++.... ..++ - ...++++++++++.+.|.+|.
T Consensus 14 ~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~-i~v~-~--~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 14 KLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVE-LTLE-T--RGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred HHHHHHHHcCCCEEEEEEEeccCCCCCceEEEE-EEEE-e--CCHHHHHHHHHHHHHcCCEEe
Confidence 33556788888887665322211 124554443 3455 3 357889999999999999874
No 469
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=27.45 E-value=50 Score=31.38 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+|+..+++++++-||++|+.||+|-+
T Consensus 170 ~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 170 SAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 6667777899999999999999999987
No 470
>PRK10060 RNase II stability modulator; Provisional
Probab=27.45 E-value=64 Score=33.27 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=46.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC--------ccccCCCCCCCC--------CCHHHHHHHHHHHHHc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM--------PGRLYDLDASKY--------GSQADLKSLIQAFRQK 103 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~--------~~d~~~id~~~~--------Gt~~d~~~Lv~~~H~~ 103 (358)
.+...+.+.+..|+++||..-- - .-..||. +.|+-.|| ..| ....-++.+++.||+.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-D-----dfGtg~ssl~~L~~l~~d~iKiD-~sfv~~i~~~~~~~~~v~~ii~~a~~l 610 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-D-----DFGTGYSSLSQLARFPIDAIKLD-QSFVRDIHKQPVSQSLVRAIVAVAQAL 610 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E-----CCCCchhhHHHHHhCCCCEEEEC-HHHHhccccCcchHHHHHHHHHHHHHC
Confidence 4567788888999999985332 1 1122333 45666666 433 3456789999999999
Q ss_pred CCEEEEEeecc
Q 018278 104 GIKCLADMVIN 114 (358)
Q Consensus 104 Gi~VilD~V~N 114 (358)
||+||.+-|=+
T Consensus 611 g~~viAeGVEt 621 (663)
T PRK10060 611 NLQVIAEGVET 621 (663)
T ss_pred CCcEEEecCCC
Confidence 99999997754
No 471
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.27 E-value=71 Score=24.22 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=36.5
Q ss_pred HHHcCCCEEEeCCCCCCCC-------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 52 LSNAGITHVWLPPPSQSVA-------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 52 l~~LGv~~I~l~Pi~~~~~-------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
+++-.++.|.+.-+...-. ..|..+. ++.|---+.+++++|++.++++|..|++.
T Consensus 58 l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~----~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSSHAEIAKKALEAGKHVL----VEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHTTESEEEEESSGGGHHHHHHHHHHTTSEEE----EESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHhhcCCEEEEecCCcchHHHHHHHHHcCCEEE----EEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 3445788888854332210 2354333 45344457999999999999999998864
No 472
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=27.24 E-value=1.6e+02 Score=29.08 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=46.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
..+....+-++.+|+||+++--++=-+..--..|... .++ =...+=.++||++|+++||+.|+-+ .|.
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~----~~N---~~gl~~Y~~lId~L~~~GI~P~VTL--~H~ 137 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDEL----EPN---EAGLQFYEDIFKECHKYGIEPLVTI--THF 137 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCC----CCC---HHHHHHHHHHHHHHHHcCCEEEEEe--ccc
Confidence 4677788899999999999998875443211112100 122 1235668999999999999999865 354
No 473
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=27.22 E-value=56 Score=30.78 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.-|...+++++++-||++|+.||+|-+..+
T Consensus 175 ~tG~~~~~~~i~~l~~~~~~~li~De~~~~ 204 (385)
T TIGR01825 175 MDGDVAPLPEIVELAERYGAVTYVDDAHGS 204 (385)
T ss_pred CCCCccCHHHHHHHHHHhCCEEEEECcccc
Confidence 335566789999999999999999999743
No 474
>PLN02721 threonine aldolase
Probab=27.20 E-value=71 Score=29.56 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.++++++++.||++|+.||+|-..
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 577999999999999999999753
No 475
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=27.16 E-value=58 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
|++||.++|++||++|.|+-.=- ..|+
T Consensus 58 teaeL~~lVa~A~~a~~kirvVg-~gHS 84 (518)
T KOG4730|consen 58 TEAELVELVAAATEAGKKIRVVG-SGHS 84 (518)
T ss_pred CHHHHHHHHHHHHHcCceEEEec-ccCC
Confidence 79999999999999999886533 4444
No 476
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=27.07 E-value=65 Score=30.71 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 36899999999999999999999988764
No 477
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=27.02 E-value=61 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.8
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCC
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPP 64 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~P 64 (358)
.|+...++++|+.+.++|++.|.|.|
T Consensus 243 ~g~~~~v~~~l~~~~~aG~~~~~l~~ 268 (290)
T TIGR03854 243 AVGWAQLHRRIDAYLDAGLTKFVIRP 268 (290)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEcC
Confidence 57789999999999999999999986
No 478
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.93 E-value=92 Score=27.80 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=40.2
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEE
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-QADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-~~d~~~Lv~~~H~~Gi~VilD 110 (358)
++-+.+.++.-+.||+..|-+.|... +|... -+ ..+-. .+.+++|++.|.++||++.+.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~-~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PN-VIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HH-HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 34555667888999999998877533 22211 12 21211 356899999999999999988
No 479
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=26.83 E-value=59 Score=31.19 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=27.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+. ...|..-+++++++.||++|+.||+|-..-
T Consensus 157 ~p~-NPtg~v~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 157 TPT-NPTLKIVDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCC-CCCCccCCHHHHHHHHHHcCCEEEEECCcC
Confidence 345 557888889999999999999999998743
No 480
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=26.79 E-value=54 Score=30.75 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 80 ~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..++ ...|...+++++++-||++|+.||+|.+--
T Consensus 144 ~~~~-n~tG~~~~~~~i~~l~~~~~~~livD~a~~ 177 (376)
T TIGR01977 144 SHAS-NVTGTILPIEEIGELAQENGIFFILDAAQT 177 (376)
T ss_pred ECCC-CCccccCCHHHHHHHHHHcCCEEEEEhhhc
Confidence 3455 678888889999999999999999998763
No 481
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=26.78 E-value=61 Score=31.01 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+. ...|+.-+++++++.||++|+.||+|-.+-
T Consensus 146 sP~-NPtG~v~dl~~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 146 TPS-NPLVRVVDIAELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred CCC-CCCCcccCHHHHHHHHHHcCCEEEEECCcc
Confidence 456 667888889999999999999999998764
No 482
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=26.78 E-value=3.9e+02 Score=24.27 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=46.8
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHc--CCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNA--GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~L--Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
.+++|++ +.+.+.+.+..+.+++. +++.|.|+==+++ ..|| -+ .-.++.+.+.+++++++
T Consensus 92 pl~~qi~--------g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~--~~~~-------g~-~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 92 PLIASVY--------GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPH--VKGG-------GI-AIGQDPELSADVVKAVK 153 (300)
T ss_pred cEEEEee--------cCCHHHHHHHHHHHHhccCccCEEEEECCCCC--CCCC-------cc-ccccCHHHHHHHHHHHH
Confidence 4788876 35677788888888876 3999999733333 2221 12 23345677788888887
Q ss_pred Hc-CCEEEEEeec
Q 018278 102 QK-GIKCLADMVI 113 (358)
Q Consensus 102 ~~-Gi~VilD~V~ 113 (358)
+. ++-|.+-+-.
T Consensus 154 ~~~~~pv~vKi~~ 166 (300)
T TIGR01037 154 DKTDVPVFAKLSP 166 (300)
T ss_pred HhcCCCEEEECCC
Confidence 65 6777766643
No 483
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=26.76 E-value=70 Score=30.20 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 212 (385)
T PRK09276 184 DLEFFEEVVDFAKKYDIIVCHDAAYSEIA 212 (385)
T ss_pred CHHHHHHHHHHHHHCCcEEEEecchhhee
Confidence 47889999999999999999999987653
No 484
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.71 E-value=1e+02 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+. +.-.+.++..+.++.||+.||++-.=+.+.|
T Consensus 179 ~i~-~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 179 QIC-PEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred hcC-CCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 344 4434577888999999999999999999987
No 485
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=26.68 E-value=2.2e+02 Score=26.20 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=51.7
Q ss_pred CCceEEEeeecCCCC----------CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC--CCCCCCCccccCCCCCCCCCC
Q 018278 22 SPALLFQGFNWESSN----------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~----------~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~--~~~~gY~~~d~~~id~~~~Gt 89 (358)
.+..||-+|--+..+ -..=.+..+.+.+..+.+|||.+|-|-|+-+. .+..|-...| .+ |-
T Consensus 30 ~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~---~~----gi 102 (330)
T COG0113 30 PNDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYD---PD----GI 102 (330)
T ss_pred HHHeeEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccC---CC----Ch
Confidence 456788888432221 11234778889999999999999999998854 2333322221 22 11
Q ss_pred HHHHHHHHHHHHHc--CCEEEEEeecc
Q 018278 90 QADLKSLIQAFRQK--GIKCLADMVIN 114 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~--Gi~VilD~V~N 114 (358)
.++-|+++++. .+-||-|+-+.
T Consensus 103 ---vqravr~ik~~~p~l~iitDvcLc 126 (330)
T COG0113 103 ---VQRAVRAIKEAFPELVVITDVCLC 126 (330)
T ss_pred ---HHHHHHHHHHhCCCeEEEeeeccc
Confidence 25555555542 78999998764
No 486
>PRK15108 biotin synthase; Provisional
Probab=26.66 E-value=2.2e+02 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
++.++..+.++.||+.|++|-.=+.+.|
T Consensus 168 ~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 168 RTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred CCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 4889999999999999999988888887
No 487
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=26.65 E-value=45 Score=31.22 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
...|+..+++++++.||++|+.|++|-..
T Consensus 164 ~~tG~~~~~~~i~~l~~~~~~~livD~a~ 192 (373)
T TIGR03812 164 TELGQIDDIEELSKIALENGIYLHVDAAF 192 (373)
T ss_pred CCCCccCCHHHHHHHHHHcCCeEEEEcCc
Confidence 56788899999999999999999999964
No 488
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=26.61 E-value=49 Score=31.44 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+|...+++++++.|+++|+.||.|-+--+
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~ 159 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAV 159 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCcc
Confidence 478888999999999999999999987654
No 489
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=26.59 E-value=69 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q 018278 89 SQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD 110 (358)
+..||..||..++++|.+|+.=
T Consensus 114 gD~DF~~Lv~~lre~G~~V~v~ 135 (160)
T TIGR00288 114 RDADFLPVINKAKENGKETIVI 135 (160)
T ss_pred ccHhHHHHHHHHHHCCCEEEEE
Confidence 4789999999999999999873
No 490
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=26.55 E-value=55 Score=30.01 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCC
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPP 65 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi 65 (358)
.||-..++++|..++++|++.|.|.|.
T Consensus 274 ~Gtpe~v~~~l~~~~~aGvd~~~l~~~ 300 (301)
T TIGR03841 274 HGDAAQVRARLEAYVDAGVDTVVLVPE 300 (301)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999999999883
No 491
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=26.54 E-value=63 Score=30.01 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
...|+..+++++.+.||++|+.|++|-+
T Consensus 135 ~~~G~~~~~~~i~~~a~~~~~~li~D~~ 162 (356)
T cd06451 135 TSTGVLNPLEGIGALAKKHDALLIVDAV 162 (356)
T ss_pred CCcccccCHHHHHHHHHhcCCEEEEeee
Confidence 5589988999999999999999999986
No 492
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.45 E-value=44 Score=28.15 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=30.4
Q ss_pred CCCCCccccCCCC-----CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 71 PQGYMPGRLYDLD-----ASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 71 ~~gY~~~d~~~id-----~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.||...-....+ .-.+||.+-++.-++++|++|+++.+
T Consensus 141 dGGy~llgLrr~~pe~fe~ipwg~~~v~~lTl~~lrqng~~~~l 184 (211)
T COG3222 141 DGGYYLLGLRRFAPELFEAIPWGTPDVLELTLKALRQNGIDVYL 184 (211)
T ss_pred cCcEEEEEeeccCHHHHhcCCCCCchHHHHHHHHHHHcCCcccc
Confidence 4578776666666 23479999999999999999998753
No 493
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=26.45 E-value=58 Score=33.74 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC--CHHHHHHHHHhcCC-CeEEEec
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSP-DFAVGEK 228 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~~p-~~~~gE~ 228 (358)
.-||.......++.-+.-+.++|.+.--..+..|+++==|||.|+|++..+ |...++.+-+...| .+++-|-
T Consensus 258 ~inyRRFF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VEK 332 (889)
T COG3280 258 EINYRRFFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVEK 332 (889)
T ss_pred ccCeeeeeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEeh
Confidence 345555556678888999999999999999999998666999999999988 34455655544443 4554444
No 494
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=26.42 E-value=59 Score=30.72 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=43.4
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCC----------CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVA----------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~----------~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
...-+.+++..|++.+++.. -+... ...-...-...++ ...|...+++++++.||++|+.+++|-+
T Consensus 103 ~~~~~~~~~~~G~~v~~v~~-~~~g~~d~~~l~~~i~~~t~lv~~~~~~-n~tG~~~~~~~I~~la~~~g~~~ivD~a 178 (382)
T TIGR03403 103 VRATCAFLESLGVEVTYLPI-NEQGTITAEQVREAITEKTALVSVMWAN-NETGMIFPIKEIGEICKERGVLFHTDAV 178 (382)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCCCCCCHHHHHHhcccCCeEEEEEccc-CCCccccCHHHHHHHHHHcCCEEEEech
Confidence 33444567778998887743 21100 0011112233455 6789988999999999999999999998
No 495
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.38 E-value=2.9e+02 Score=24.65 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeecc---CCCCCHHHHHHHHHhcCC-CeEEEeccC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF---VKGYAPSITKVYMENTSP-DFAVGEKWD 230 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~---a~~i~~~~~~~~~~~~~p-~~~~gE~~~ 230 (358)
+-|+..|+.. |.+-++...+ .|+|||=+=+ -..++.+.++++++..++ -.++--.++
T Consensus 65 F~Ys~~E~~~-M~~di~~~~~-~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD 125 (248)
T PRK11572 65 FCYSDGEFAA-MLEDIATVRE-LGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFD 125 (248)
T ss_pred CCCCHHHHHH-HHHHHHHHHH-cCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhh
Confidence 5566666644 4455666666 9999998844 457899999999888776 444444443
No 496
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.26 E-value=4.4e+02 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCeEee-ccCCCCCHHHHHHHHHh
Q 018278 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~ 218 (358)
+++.+.++...+ .|+|.+++ |++....++...++++.
T Consensus 151 ~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~ 188 (273)
T cd07941 151 EYALATLKAAAE-AGADWLVLCDTNGGTLPHEIAEIVKE 188 (273)
T ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 557777777776 89999984 78887877777776554
No 497
>PRK06767 methionine gamma-lyase; Provisional
Probab=26.19 E-value=61 Score=30.90 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+. ...|+.-+++++++.||++|+.||+|-.+.
T Consensus 154 sp~-NptG~v~dl~~I~~la~~~g~~vivD~a~a 186 (386)
T PRK06767 154 TPI-NPTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186 (386)
T ss_pred CCC-CCCceecCHHHHHHHHHHcCCEEEEECCCc
Confidence 344 556888889999999999999999998863
No 498
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=26.19 E-value=66 Score=29.66 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=48.0
Q ss_pred CchHHHHhhhhhHHH---cCCCEEEeCCCCC-----------------CCCCC---------CCCccccCCCCCCCCCCH
Q 018278 40 GWYNSLKNSIPDLSN---AGITHVWLPPPSQ-----------------SVAPQ---------GYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 40 G~~~gl~~~L~yl~~---LGv~~I~l~Pi~~-----------------~~~~~---------gY~~~d~~~id~~~~Gt~ 90 (358)
=+.+..++.+..|.+ +++..|+= |+.. .-+-+ .-...|...++..+.|+.
T Consensus 165 w~~~~A~~~~~~l~~~~~~~i~~iEq-P~~~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi 243 (307)
T TIGR01927 165 LSPDEAQQFLKALDPNLRGRIAFLEE-PLPDADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSP 243 (307)
T ss_pred CCHHHHHHHHHhcccccCCCceEEeC-CCCCHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCH
Confidence 356777777888886 66777762 3311 00101 123455666776678999
Q ss_pred HHHHHHHHHHHHcCCEEEEE
Q 018278 91 ADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD 110 (358)
.+.+++++.|+++||++++-
T Consensus 244 ~~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 244 AKLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999874
No 499
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.19 E-value=1.4e+02 Score=29.09 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEeeccccccc
Q 018278 89 SQADLKSLIQAFRQK--GIKCLADMVINHRTAE 119 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~--Gi~VilD~V~NH~~~~ 119 (358)
|.++++++|+.++++ ||.|..|+++.+-+..
T Consensus 281 t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET 313 (445)
T PRK14340 281 TIEEYLEKIALIRSAIPGVTLSTDLIAGFCGET 313 (445)
T ss_pred CHHHHHHHHHHHHHhCCCCEEeccEEEECCCCC
Confidence 688999999999999 9999999999887654
No 500
>PRK11059 regulatory protein CsrD; Provisional
Probab=26.18 E-value=85 Score=32.19 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccCCCCCCCC--------
Q 018278 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYDLDASKY-------- 87 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~~-------- 87 (358)
......+++++=.-.. ..+...+...+..|+++||.... -=+-...+ +-..-+.|+-.+| +.|
T Consensus 513 ~~~~~~l~~Ei~E~~~----~~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid-~s~v~~i~~~~ 586 (640)
T PRK11059 513 RSQRKRLIFELAEADV----CQHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLH-PSLVRNIHKRT 586 (640)
T ss_pred CCCcceEEEEEechhh----hcCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEEC-HHHHhhhhcCc
Confidence 3344566666543111 24578889999999999996443 11111101 1111245566666 433
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+..-++.+++.||+.|++||..-|=+.
T Consensus 587 ~~~~~v~sli~~a~~~~i~viAegVEt~ 614 (640)
T PRK11059 587 ENQLFVRSLVGACAGTETQVFATGVESR 614 (640)
T ss_pred hhHHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 2334589999999999999999977653
Done!