Query 018279
Match_columns 358
No_of_seqs 122 out of 974
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w63_M Adaptor-related protein 100.0 6.6E-88 2.2E-92 665.0 36.2 355 1-358 68-423 (423)
2 2vgl_M AP-2 complex subunit MU 100.0 5.9E-87 2E-91 660.4 41.6 354 1-357 66-435 (435)
3 1i31_A Clathrin coat assembly 100.0 7E-75 2.4E-79 549.9 32.0 298 57-357 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.8E-72 6.1E-77 520.7 29.8 265 90-357 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 4.1E-69 1.4E-73 521.5 32.6 266 89-357 106-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 5.5E-69 1.9E-73 505.0 29.8 270 82-357 15-301 (301)
7 1w63_Q Adapter-related protein 99.7 3E-17 1E-21 139.8 5.9 74 1-74 68-141 (158)
8 2vgl_S AP-2 complex subunit si 99.6 2E-16 6.7E-21 132.4 6.7 72 1-72 68-140 (142)
9 3tjz_C Coatomer subunit zeta-1 99.6 3.9E-15 1.3E-19 125.7 7.7 72 1-72 78-150 (153)
10 3g9h_A Suppressor of yeast pro 99.0 1E-06 3.5E-11 81.9 30.2 226 100-354 67-325 (328)
11 2wl8_A Peroxisomal biogenesis 29.5 78 0.0027 24.8 4.9 21 37-57 88-108 (126)
12 2fcg_F Cationic, antibacterial 25.3 45 0.0015 18.5 1.9 16 17-32 5-20 (26)
13 1wcu_A CBM29_1, non-catalytic 21.8 1.5E+02 0.0052 22.9 5.0 32 311-350 106-137 (153)
No 1
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=6.6e-88 Score=665.04 Aligned_cols=355 Identities=63% Similarity=1.135 Sum_probs=308.0
Q ss_pred CeeecCCCChHHHHHHHHHHHHHHHHHhhccchHHHHhcHHHHHHHHHHHhcCCeeeecChHHHHHhhccccccccccC-
Q 018279 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQ- 79 (358)
Q Consensus 1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~~~l~e~~I~~n~~~i~elldE~id~G~p~~t~~~~Lk~~i~~~s~~~~~~~- 79 (358)
+|+++.|.|++++++|||+|.++|++|||.++|+.|++||+.||++||||+|+|+||+|++++|++++.+++++...++
T Consensus 68 v~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~ 147 (423)
T 1w63_M 68 VATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAP 147 (423)
T ss_dssp EEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC--
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccccccc
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999998743222
Q ss_pred CCCCccccccccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCC
Q 018279 80 RPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST 159 (358)
Q Consensus 80 ~~~~~~~~~~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 159 (358)
.+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++..++ +
T Consensus 148 ~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~ 226 (423)
T 1w63_M 148 RPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-G 226 (423)
T ss_dssp ---------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC---------
T ss_pred CCcccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-c
Confidence 345566778999999999999999999999999999999999999999999999999999999999999876544332 2
Q ss_pred CCceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcce
Q 018279 160 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERST 239 (358)
Q Consensus 160 ~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~ 239 (358)
...++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..||+.+.|+++..+++++||+++++++|+.+..
T Consensus 227 ~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~ 306 (423)
T 1w63_M 227 KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306 (423)
T ss_dssp -----CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSE
T ss_pred ccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcce
Confidence 34567899999999999999999999999999999999999998877666678899987667899999999999998888
Q ss_pred eeeEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCCCCCCCCCceEEEEEECc
Q 018279 240 ATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPY 319 (358)
Q Consensus 240 ~~~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~~ 319 (358)
+++|.|+||+|+++.+++++++.|+++|++++++++|+|++++|+++++++|++++++......+ .++||+|+|++|+
T Consensus 307 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~~ 384 (423)
T 1w63_M 307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPY 384 (423)
T ss_dssp EESCEEEEECCTTCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC------------CCCEEEEBCCSS
T ss_pred eeEEEEEEeCCCCcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCccccc--CCCcEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999765422234 7999999999999
Q ss_pred cccccceEEEEEEeecCCCccccceEEEEEeCcEEEEeC
Q 018279 320 FTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI 358 (358)
Q Consensus 320 ~s~SGl~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~r~~ 358 (358)
+++||++|+++++.++.+|+|+|||||+|+||+|++|+.
T Consensus 385 ~t~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~R~~ 423 (423)
T 1w63_M 385 FTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLRTQ 423 (423)
T ss_dssp CCTTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEEECCC
T ss_pred EeCCCCEEEEEEeEccCCCCCcCceEEEEeCCcEEEecC
Confidence 999999999999998778999999999999999999974
No 2
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=5.9e-87 Score=660.42 Aligned_cols=354 Identities=41% Similarity=0.784 Sum_probs=308.5
Q ss_pred CeeecCCCChHHHHHHHHHHHHHHHHHhhccchHHHHhcHHHHHHHHHHHhcCCeeeecChHHHHHhhccccccccc---
Q 018279 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEV--- 77 (358)
Q Consensus 1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~~~l~e~~I~~n~~~i~elldE~id~G~p~~t~~~~Lk~~i~~~s~~~~~--- 77 (358)
+|+++.|.|++++++|||+|.++|++|||.++|+.|++||+.||++||||+|+|+||+|++++|+.++.+++++.+.
T Consensus 66 v~~~~~~~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~ 145 (435)
T 2vgl_M 66 AAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK 145 (435)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC----
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred --cCCCCCccccccccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhc
Q 018279 78 --TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQ 155 (358)
Q Consensus 78 --~~~~~~~~~~~~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~ 155 (358)
++.+|++++++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|||+|+|+||++..++..
T Consensus 146 ~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~ 225 (435)
T 2vgl_M 146 EEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ 225 (435)
T ss_dssp -------------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---
T ss_pred ccccccccccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccc
Confidence 224455667889999999999999999999999999999999999999999999999999999999999998655432
Q ss_pred CCC-----C--CCceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEE
Q 018279 156 GRS-----T--KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV 228 (358)
Q Consensus 156 ~~~-----~--~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~~~~~e~~l 228 (358)
+++ + ...++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..||+.+.|+++..+++++||++
T Consensus 226 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l 305 (435)
T 2vgl_M 226 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 305 (435)
T ss_dssp --------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEE
T ss_pred cccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEE
Confidence 211 0 124678999999999999999999999999999999999999988776666788999876667999999
Q ss_pred EeeecCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCCCCCCCC
Q 018279 229 KARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERK 308 (358)
Q Consensus 229 ~~~~~~~~~~~~~~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (358)
+++++|+++..+++|.|+||+|+++.++.++++.|+++|++++++++|+|++++|+++++++|++++.+......+ .+
T Consensus 306 ~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~--~~ 383 (435)
T 2vgl_M 306 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--AR 383 (435)
T ss_dssp EEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCC--CC
T ss_pred EEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCccc--CC
Confidence 9999999888899999999999999999999999999999999999999999999999999999999875333344 78
Q ss_pred CceEEEEEECccccccceEEEEEEeec----CCCccccceEEEEEeCcEEEEe
Q 018279 309 APIRVKFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 357 (358)
Q Consensus 309 ~pi~v~F~i~~~s~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~ 357 (358)
+||+|+|++| +++||++|++|++.++ ++|+|+|||||+|+||+|++|+
T Consensus 384 ~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 384 PPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp CCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred CcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence 9999999999 9999999999999986 5899999999999999999995
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=7e-75 Score=549.89 Aligned_cols=298 Identities=40% Similarity=0.753 Sum_probs=235.9
Q ss_pred eecChHHHHHhhccccccccc-----cCCCCCccccccccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEE
Q 018279 57 QYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALK 131 (358)
Q Consensus 57 ~~t~~~~Lk~~i~~~s~~~~~-----~~~~~~~~~~~~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~ 131 (358)
|+||++.||+||..+++..+. +..+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 689999999999999876531 234567778899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeccchhhhhcCCC-------CCCceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecC
Q 018279 132 MRTYLSGMPECKLGLNDRILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNT 204 (358)
Q Consensus 132 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~ 204 (358)
|+|+|+|||+|+|+||+...++.++++ ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998665433221 0134678999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCC
Q 018279 205 QVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGG 284 (358)
Q Consensus 205 ~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~ 284 (358)
+..||+.+.|+++..+++++||+++++++|+.+..+++|.|+||+|+++.+++++++.|+++|++++++++|+|++++|+
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~ 240 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM 240 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESS
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCC
Confidence 77666678899987666799999999999998889999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEecCCCCCCCCCCCCCceEEEEEECccccccceEEEEEEeec----CCCccccceEEEEEeCcEEEEe
Q 018279 285 KEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 357 (358)
Q Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~s~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~ 357 (358)
++++++|+++|.+......+ .++||+|+|++| +++|||+|++|++.++ ++|+|+|||||+|+||+|++|+
T Consensus 241 ~e~~l~~~~~l~s~~~~~~~--~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~ 314 (314)
T 1i31_A 241 KESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 314 (314)
T ss_dssp EEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEecCCCcCCcc--CCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence 99999999999875323344 799999999999 9999999999999986 5899999999999999999995
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.8e-72 Score=520.69 Aligned_cols=265 Identities=66% Similarity=1.206 Sum_probs=240.9
Q ss_pred ccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCCCCceeeeccc
Q 018279 90 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 169 (358)
Q Consensus 90 ~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~ 169 (358)
+||+.|++|++|||||||+|+|+++++++|.++.++|.|+|.|+|+|+|+|+|+|+||+...++..++. ...++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~-~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCT-TSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCcccccccccc-ccCccCcccc
Confidence 699999999999999999999999999999999999999999999999999999999998876554432 3456789999
Q ss_pred eeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceeeeEEEEecC
Q 018279 170 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPV 249 (358)
Q Consensus 170 ~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~i~iP~ 249 (358)
+|||||+++.|+++|+|+|+||||+|+||+||++.+..||+.+.|+++..+.+++|+.++++++|+.+..+++|.|+||+
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 99999999999999999999999999999999988877888889999877668999999999999998999999999999
Q ss_pred CCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCCCCCCCCCceEEEEEECccccccceEEE
Q 018279 250 SSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRY 329 (358)
Q Consensus 250 P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~s~SGl~V~~ 329 (358)
|.++..+++.++.|+++|++++++|+|+|++++|+++++++|++++++....+.+ .++||+|+|++|++++|||+|++
T Consensus 160 P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~--~~~pI~v~F~ip~~t~SGl~V~~ 237 (266)
T 4en2_M 160 PNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPYFTTSGIQVRY 237 (266)
T ss_dssp CTTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC------------CCCEEEEEEEESEESSCCCEEE
T ss_pred CCCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcc--cCCcEEEEEEeCCceeCCcEEEE
Confidence 9999999999999999999999999999999999999999999999875333345 79999999999999999999999
Q ss_pred EEEeecCCCccccceEEEEEeCcEEEEe
Q 018279 330 LKIIEKSGYHALPWVRYITMAGEYELRL 357 (358)
Q Consensus 330 l~v~~~~~~~~~k~vrY~t~sg~Y~~r~ 357 (358)
|+|.++.+|+|+|||||+|+||+|++|+
T Consensus 238 L~v~e~~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 238 LKIIEKSGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp EEEECSSCCCEEEEEEEEEECSSEEECC
T ss_pred EEeeccCCCCCCCCEEEEEeCCCEEEec
Confidence 9999888999999999999999999997
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=4.1e-69 Score=521.47 Aligned_cols=266 Identities=40% Similarity=0.748 Sum_probs=236.4
Q ss_pred ccc---ccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCC-------
Q 018279 89 VSW---RSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS------- 158 (358)
Q Consensus 89 ~~w---r~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~------- 158 (358)
+|| |+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||+...++..++.
T Consensus 106 ~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~ 185 (385)
T 3ml6_A 106 PPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK 185 (385)
T ss_dssp CCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC-----------------
T ss_pred CCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccc
Confidence 499 7899999999999999999999999999999999999999999999999999999998765433221
Q ss_pred CCCceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcc
Q 018279 159 TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERS 238 (358)
Q Consensus 159 ~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~ 238 (358)
+...++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..||+.+.|+++..+++++||+++++++|+.++
T Consensus 186 ~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~ 265 (385)
T 3ml6_A 186 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSL 265 (385)
T ss_dssp -----CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTC
T ss_pred cccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcc
Confidence 12356789999999999999999999999999999999999999887766667889999877789999999999999999
Q ss_pred eeeeEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCCCCCCCCCceEEEEEEC
Q 018279 239 TATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIP 318 (358)
Q Consensus 239 ~~~~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~ 318 (358)
.+++|.|+||+|+++.++++.++.|+++|++++++++|+|++++|+++++|+|++++++......+ .++||+|+|++|
T Consensus 266 ~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~--~~~PI~v~F~Ip 343 (385)
T 3ml6_A 266 LAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP 343 (385)
T ss_dssp CEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSC--CCCCEEEEEEES
T ss_pred eEEEEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccc--cCCCEEEEEEEe
Confidence 999999999999999899999999999999999999999999999999999999999875433345 799999999999
Q ss_pred ccccccceEEEEEEeec----CCCccccceEEEEEeCcEEEEe
Q 018279 319 YFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 357 (358)
Q Consensus 319 ~~s~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~ 357 (358)
+++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 344 -~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 344 -FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp -SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred -ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 9999999999999886 5789999999999999999995
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=5.5e-69 Score=504.97 Aligned_cols=270 Identities=28% Similarity=0.535 Sum_probs=222.4
Q ss_pred CCccccc-cccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCCC
Q 018279 82 PMAVTNA-VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTK 160 (358)
Q Consensus 82 ~~~~~~~-~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~ 160 (358)
+.|++++ ++||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..++.+.
T Consensus 15 ~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~ 92 (301)
T 3l81_A 15 SSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGY 92 (301)
T ss_dssp --------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCC
T ss_pred chhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccccc
Confidence 3455555 499985 8999999999999999999999999999999999999999999999999999876654433334
Q ss_pred CceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCC--CCcEEEEEEEEEccc-eEEEEEEEeeecCCCc
Q 018279 161 GKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV--KPLIWVEAQVERHSR-SRVEILVKARSQFKER 237 (358)
Q Consensus 161 ~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~--~P~~~v~~~~~~~~~-~~~e~~l~~~~~~~~~ 237 (358)
..++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+|+.+.|+++..++ +++||+++++++|+.+
T Consensus 93 ~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~ 172 (301)
T 3l81_A 93 GPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSK 172 (301)
T ss_dssp CSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTT
T ss_pred cCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCC
Confidence 4678899999999999999999999999999999999999998754 344467899998754 7999999999999999
Q ss_pred ceeeeEEEEecCCCCCCCce--EEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCC---------CCCC
Q 018279 238 STATNVEIELPVSSDASNPD--VRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEE---------ATPE 306 (358)
Q Consensus 238 ~~~~~v~i~iP~P~~~~~~~--~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~ 306 (358)
..+++|.|+||+|+++.++. +.++.|+++| ++++|+|+|++++|+++.++++++++++..+.+ .+
T Consensus 173 ~~~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~-- 248 (301)
T 3l81_A 173 SQALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPL-- 248 (301)
T ss_dssp CEEEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------C--
T ss_pred cEEEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccc--
Confidence 99999999999999988888 5578999999 999999999999999999999999987643221 33
Q ss_pred CCCceEEEEEECccccccceEEEEEEeec--CCCccccceEEEEEeCcEEEEe
Q 018279 307 RKAPIRVKFEIPYFTVSGIQVRYLKIIEK--SGYHALPWVRYITMAGEYELRL 357 (358)
Q Consensus 307 ~~~pi~v~F~i~~~s~SGl~V~~l~v~~~--~~~~~~k~vrY~t~sg~Y~~r~ 357 (358)
.++||+|+|++|++++|||+|++|+|.++ .+|+|+|||||+|+||+|++|+
T Consensus 249 ~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 249 GLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp CCCCEEEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred cCCCEEEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 78999999999999999999999999986 3689999999999999999995
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=3e-17 Score=139.77 Aligned_cols=74 Identities=26% Similarity=0.263 Sum_probs=71.1
Q ss_pred CeeecCCCChHHHHHHHHHHHHHHHHHhhccchHHHHhcHHHHHHHHHHHhcCCeeeecChHHHHHhhcccccc
Q 018279 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYR 74 (358)
Q Consensus 1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~~~l~e~~I~~n~~~i~elldE~id~G~p~~t~~~~Lk~~i~~~s~~ 74 (358)
+|+++++.||+++++|||++.++|++|||.++|+.|++||+.+|++||||+|+|+||.|+++.|++++.+++..
T Consensus 68 v~~~~~~~Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l 141 (158)
T 1w63_Q 68 CCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 141 (158)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999987654
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.64 E-value=2e-16 Score=132.44 Aligned_cols=72 Identities=28% Similarity=0.385 Sum_probs=67.4
Q ss_pred CeeecCCCChHHHHHHHHHHHHHHHHHhhccchHHHHhcHHHHHHHHHHHhcCCeeeec-ChHHHHHhhcccc
Q 018279 1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYT-EANILSEFIKTDA 72 (358)
Q Consensus 1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~~~l~e~~I~~n~~~i~elldE~id~G~p~~t-~~~~Lk~~i~~~s 72 (358)
+|+++++.|++++++|||++.++|++|||.++|+.|++||+.+|++||||+|+|+||.| +.+.|+.++.++.
T Consensus 68 v~~~~~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 68 CICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 57899999999999999999999999999999999999999999999999999999998 4777999987653
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.56 E-value=3.9e-15 Score=125.68 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=66.0
Q ss_pred CeeecCCCChHHHHHHHHHHHHHHHHHh-hccchHHHHhcHHHHHHHHHHHhcCCeeeecChHHHHHhhcccc
Q 018279 1 MTASRQNCNAASLLFFLHRVVDVFKHYF-EELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDA 72 (358)
Q Consensus 1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~-~~l~e~~I~~n~~~i~elldE~id~G~p~~t~~~~Lk~~i~~~s 72 (358)
+++++.+.|++++++|||++.++|.+|| |.++|+.|+.||..+|++||||+|+|+||.|+++.+...+.+.+
T Consensus 78 v~~~~~~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 78 YVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred EEEEcCCCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 4789999999999999999999999999 88999999999999999999999999999999999999887653
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1e-06 Score=81.85 Aligned_cols=226 Identities=17% Similarity=0.299 Sum_probs=138.5
Q ss_pred cceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecC-------CCeEEEEeccchhhhhcCCCCCCceeeeccceee
Q 018279 100 KNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSG-------MPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFH 172 (358)
Q Consensus 100 ~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~~fH 172 (358)
.-++-..|.|.|||.+. +|.+.++.|.|+|.+. |..| -+.+.++|++-..++... =+-+|-
T Consensus 67 ~pGLnASI~E~VNA~Fk-gg~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv~----------pN~~fv 134 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFK-DGMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKVI----------LNQAFI 134 (328)
T ss_dssp CCEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEEE----------ECTTTE
T ss_pred CCceeEEEEEEEEEEEE-CCcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhheee----------CCHHHh
Confidence 45788899999999998 5789999999998876 4444 245788887654332211 011111
Q ss_pred eeeccccccCCceEEEeCC---CCeEEEEEEEecCCCCCcEEEEEEEEEcc-ceEEEEEEEeeecCCC---cceeeeEEE
Q 018279 173 QCVRLARFENDRTISFIPP---DGSFDLMTYRLNTQVKPLIWVEAQVERHS-RSRVEILVKARSQFKE---RSTATNVEI 245 (358)
Q Consensus 173 ~cV~~~~~~~~~~i~F~PP---dG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~-~~~~e~~l~~~~~~~~---~~~~~~v~i 245 (358)
.++.- +.-.|-++ ...-.+|+|+++....|+.. .+.-+... ...+-+.++.+..++. ....+||.+
T Consensus 135 ~~~~~------~eF~vn~~~L~sktv~~lKYqVs~~~~PL~l-~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~ 207 (328)
T 3g9h_A 135 ERVAP------EEFKVNPSFIDSRTLGAIKYSIKEPIAPIVI-HPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVV 207 (328)
T ss_dssp EEEET------TEEEECTTTTBTCEEEEEEEEEESCCCSEEE-EEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEE
T ss_pred ccCCC------CCEEEchHHhcccceeeEEEEECCCCCCeEE-EeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEE
Confidence 11111 11111111 12356899999876677754 34333322 2344444445555665 567899999
Q ss_pred EecCCCCCCCceEEecceeEEEeCCCcEEEEEecc-c--CCCce-eEEEEEEEecCCCCCCCCCCCCCceEEEEEECcc-
Q 018279 246 ELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRS-F--PGGKE-YMLRAEFTLPSITAEEATPERKAPIRVKFEIPYF- 320 (358)
Q Consensus 246 ~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~-~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~- 320 (358)
.+|+... .+....+.-.+.|..+++.+.|+|+. + ..+.+ ..|.|.+...+.. . + ....+.++|++.+.
T Consensus 208 ~V~ldGa--~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~-~-~---~~~gV~akF~~~~~~ 280 (328)
T 3g9h_A 208 FVNIDGA--NATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLA-H-E---SAKGVITKFTISETD 280 (328)
T ss_dssp EEEBCSS--CEEEEEESSSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCC-C-B---CSSCEEEEEEECCCS
T ss_pred EEEeCCC--ceeEEEecCCceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCC-C-C---CCCcEEEEEEEeCCC
Confidence 9999642 23333334466789999999999987 3 32223 6789999873321 1 1 23339999999865
Q ss_pred --------ccccceEEEEEEeecCCCccc--cceEEEE----EeCcEE
Q 018279 321 --------TVSGIQVRYLKIIEKSGYHAL--PWVRYIT----MAGEYE 354 (358)
Q Consensus 321 --------s~SGl~V~~l~v~~~~~~~~~--k~vrY~t----~sg~Y~ 354 (358)
.-|||.|......++ .|+ .|.---| .+|.|+
T Consensus 281 ~~~~~~~~~gsgi~i~~~~~~~~---dPF~~~W~~v~~~r~l~~G~Y~ 325 (328)
T 3g9h_A 281 NVALPHSGAGSGITLTCQELDEN---NPFGGEWLDVNTKRTLTTGNYH 325 (328)
T ss_dssp CSSCTTTTCSCCCEEEEEEESSS---CTTCCCCEECEEEEEEEEEEEE
T ss_pred cccccccccCCceeEEecccccC---CCCcCcccccceEEEEeeeEEE
Confidence 468999998876542 233 4654333 247775
No 11
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=29.53 E-value=78 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=17.4
Q ss_pred HhcHHHHHHHHHHHhcCCeee
Q 018279 37 RDNFVVVYELLDEMMDFGYPQ 57 (358)
Q Consensus 37 ~~n~~~i~elldE~id~G~p~ 57 (358)
+.+|..|.+++.+|=++|.|=
T Consensus 88 ~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 88 KARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 467888999999999999874
No 12
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=25.33 E-value=45 Score=18.50 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhccc
Q 018279 17 LHRVVDVFKHYFEELE 32 (358)
Q Consensus 17 L~~~~~~l~~y~~~l~ 32 (358)
|.++.+-|+|||+.|.
T Consensus 5 ~kkIgQkIkdFf~~l~ 20 (26)
T 2fcg_F 5 FKRIVQRIKDFLRNLV 20 (26)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5678889999998753
No 13
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=21.85 E-value=1.5e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=22.3
Q ss_pred eEEEEEECccccccceEEEEEEeecCCCccccceEEEEEe
Q 018279 311 IRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMA 350 (358)
Q Consensus 311 i~v~F~i~~~s~SGl~V~~l~v~~~~~~~~~k~vrY~t~s 350 (358)
..|+|+.| .+.+.++..++..-..|+||+..|
T Consensus 106 ~~VD~~~~--------FDRI~~QD~P~~~~~I~~r~ii~S 137 (153)
T 1wcu_A 106 FEVDDEYQ--------FDRIIVQDGPASNIPIYMRYIIYS 137 (153)
T ss_dssp EEEEEEEE--------ESEEEEEETTCCCCCEEEEEEEEE
T ss_pred EeccCccc--------ccEEEEecCCCCCCeEEEEEEEec
Confidence 45666655 567777775555556799999887
Done!