Query 018280
Match_columns 358
No_of_seqs 248 out of 1440
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0182 Predicted translation 100.0 2E-108 5E-113 773.3 33.0 333 12-357 2-335 (346)
2 TIGR00512 salvage_mtnA S-methy 100.0 2.8E-98 6E-103 724.9 35.9 327 14-356 1-331 (331)
3 PRK08334 translation initiatio 100.0 5.4E-98 1E-102 725.4 36.0 331 13-357 14-344 (356)
4 PRK05720 mtnA methylthioribose 100.0 6.9E-98 1E-102 726.8 35.7 330 13-357 3-332 (344)
5 PRK05772 translation initiatio 100.0 9.2E-98 2E-102 727.0 36.6 334 13-357 16-352 (363)
6 PRK06036 translation initiatio 100.0 7.4E-97 2E-101 717.0 34.6 329 13-357 1-331 (339)
7 KOG1468 Predicted translation 100.0 1.4E-96 3E-101 677.2 25.5 342 11-357 1-343 (354)
8 PRK06371 translation initiatio 100.0 2.3E-94 4.9E-99 695.1 32.1 316 8-357 7-322 (329)
9 TIGR00524 eIF-2B_rel eIF-2B al 100.0 1.6E-84 3.5E-89 625.4 32.0 303 40-356 1-303 (303)
10 TIGR00511 ribulose_e2b2 ribose 100.0 8.7E-78 1.9E-82 579.1 29.9 289 42-357 1-289 (301)
11 PRK08535 translation initiatio 100.0 8.6E-77 1.9E-81 574.6 29.6 289 42-357 6-294 (310)
12 PRK08335 translation initiatio 100.0 1.1E-76 2.3E-81 561.3 28.7 269 41-357 4-272 (275)
13 COG1184 GCD2 Translation initi 100.0 5.4E-67 1.2E-71 496.0 28.2 286 42-357 5-290 (301)
14 PF01008 IF-2B: Initiation fac 100.0 8.6E-67 1.9E-71 498.8 26.7 281 54-356 1-282 (282)
15 KOG1467 Translation initiation 100.0 5.8E-57 1.3E-61 441.5 21.2 295 46-357 233-542 (556)
16 KOG1466 Translation initiation 100.0 1.9E-55 4.2E-60 402.5 22.0 272 61-357 29-302 (313)
17 KOG1465 Translation initiation 100.0 5.4E-52 1.2E-56 386.7 29.3 294 42-357 10-336 (353)
18 PRK06372 translation initiatio 100.0 1.1E-51 2.3E-56 386.0 21.7 246 48-357 4-249 (253)
19 TIGR00021 rpiA ribose 5-phosph 97.4 0.0023 5E-08 59.4 12.1 124 151-306 3-132 (218)
20 cd01398 RPI_A RPI_A: Ribose 5- 97.4 0.0017 3.8E-08 60.0 11.0 125 151-306 3-132 (213)
21 PRK10434 srlR DNA-bindng trans 97.2 0.013 2.7E-07 55.7 14.9 127 147-296 75-214 (256)
22 PRK00702 ribose-5-phosphate is 97.2 0.0056 1.2E-07 56.9 11.8 126 149-306 6-136 (220)
23 PF00455 DeoRC: DeoR C termina 97.0 0.013 2.8E-07 51.7 12.0 125 148-295 4-141 (161)
24 PRK13509 transcriptional repre 97.0 0.014 3E-07 55.3 12.6 124 148-296 78-213 (251)
25 PRK09802 DNA-binding transcrip 96.8 0.038 8.3E-07 52.8 14.7 126 148-296 91-229 (269)
26 COG1349 GlpR Transcriptional r 96.7 0.043 9.4E-07 52.0 13.8 126 148-296 76-214 (253)
27 PRK10906 DNA-binding transcrip 96.5 0.083 1.8E-06 50.1 14.2 126 148-296 76-214 (252)
28 PRK10411 DNA-binding transcrip 96.3 0.15 3.2E-06 48.0 14.5 125 147-295 77-214 (240)
29 PRK10681 DNA-binding transcrip 95.7 0.24 5.2E-06 46.8 13.3 126 148-296 77-215 (252)
30 PF02142 MGS: MGS-like domain 93.4 0.13 2.9E-06 41.0 4.5 80 190-285 3-94 (95)
31 PLN02384 ribose-5-phosphate is 92.7 2.5 5.5E-05 40.4 12.6 126 153-307 39-170 (264)
32 cd00532 MGS-like MGS-like doma 92.6 0.97 2.1E-05 37.2 8.7 83 191-289 16-107 (112)
33 smart00851 MGS MGS-like domain 91.8 1.7 3.7E-05 34.1 9.0 80 191-285 4-89 (90)
34 PRK13978 ribose-5-phosphate is 91.6 4 8.6E-05 38.3 12.4 125 152-306 10-139 (228)
35 cd01423 MGS_CPS_I_III Methylgl 90.7 0.89 1.9E-05 37.5 6.6 77 190-285 16-105 (116)
36 COG2057 AtoA Acyl CoA:acetate/ 90.5 1.1 2.5E-05 41.6 7.6 45 224-268 69-120 (225)
37 cd01424 MGS_CPS_II Methylglyox 90.5 2.4 5.3E-05 34.5 9.0 81 190-287 16-101 (110)
38 COG0120 RpiA Ribose 5-phosphat 89.7 8 0.00017 36.2 12.5 127 151-306 8-136 (227)
39 PRK05234 mgsA methylglyoxal sy 88.8 3.4 7.4E-05 35.8 8.9 89 189-289 19-114 (142)
40 PF01073 3Beta_HSD: 3-beta hyd 88.7 1 2.3E-05 43.1 6.2 107 181-293 1-119 (280)
41 cd01422 MGS Methylglyoxal synt 81.3 14 0.00031 30.5 9.0 74 202-287 27-107 (115)
42 TIGR02428 pcaJ_scoB_fam 3-oxoa 80.0 21 0.00045 32.8 10.4 97 150-265 3-112 (207)
43 PRK09932 glycerate kinase II; 74.8 4.3 9.3E-05 40.9 4.6 50 241-294 280-329 (381)
44 PF10087 DUF2325: Uncharacteri 72.1 16 0.00034 29.1 6.5 56 223-287 18-81 (97)
45 PLN02260 probable rhamnose bio 71.1 16 0.00035 39.1 8.3 92 201-294 379-486 (668)
46 TIGR00045 glycerate kinase. Th 71.1 5.9 0.00013 39.9 4.6 50 241-294 279-328 (375)
47 COG4635 HemG Flavodoxin [Energ 70.7 4.7 0.0001 35.8 3.3 64 220-287 21-85 (175)
48 PLN02778 3,5-epimerase/4-reduc 69.8 27 0.00058 33.5 8.7 26 265-290 86-111 (298)
49 PLN02331 phosphoribosylglycina 69.4 22 0.00047 32.8 7.6 71 185-259 8-91 (207)
50 PRK10342 glycerate kinase I; P 68.1 7.4 0.00016 39.2 4.6 50 241-294 280-329 (381)
51 COG1929 Glycerate kinase [Carb 68.0 7 0.00015 39.0 4.2 51 241-295 280-330 (378)
52 cd01988 Na_H_Antiporter_C The 67.7 62 0.0013 25.9 10.3 61 224-287 65-131 (132)
53 PF02844 GARS_N: Phosphoribosy 67.6 8.3 0.00018 31.5 3.9 88 171-285 2-90 (100)
54 KOG3075 Ribose 5-phosphate iso 66.4 73 0.0016 30.4 10.4 104 188-306 53-163 (261)
55 PF05690 ThiG: Thiazole biosyn 64.8 15 0.00033 34.6 5.6 116 168-293 61-187 (247)
56 COG1091 RfbD dTDP-4-dehydrorha 63.3 22 0.00048 34.4 6.6 58 239-296 42-107 (281)
57 PF02254 TrkA_N: TrkA-N domain 62.1 21 0.00046 28.6 5.5 87 185-289 5-97 (116)
58 COG2873 MET17 O-acetylhomoseri 59.7 36 0.00079 34.3 7.5 65 218-287 116-183 (426)
59 PRK00208 thiG thiazole synthas 59.5 76 0.0016 30.2 9.3 107 184-293 70-187 (250)
60 PRK02947 hypothetical protein; 59.2 1.6E+02 0.0034 27.6 12.7 33 220-254 125-168 (246)
61 TIGR00639 PurN phosphoribosylg 58.0 47 0.001 30.0 7.5 70 186-259 10-92 (190)
62 TIGR00273 iron-sulfur cluster- 57.9 1.2E+02 0.0027 31.1 11.3 52 246-298 180-232 (432)
63 PF01135 PCMT: Protein-L-isoas 57.1 15 0.00032 33.8 4.2 76 168-255 72-149 (209)
64 PRK13789 phosphoribosylamine-- 57.0 21 0.00045 36.4 5.6 78 170-262 5-83 (426)
65 PF06026 Rib_5-P_isom_A: Ribos 56.9 19 0.00042 32.2 4.7 78 220-307 10-89 (173)
66 cd04728 ThiG Thiazole synthase 56.7 73 0.0016 30.3 8.7 106 184-292 70-186 (248)
67 PF03709 OKR_DC_1_N: Orn/Lys/A 56.1 18 0.00039 29.8 4.1 66 221-291 10-77 (115)
68 PF02595 Gly_kinase: Glycerate 55.9 6.1 0.00013 39.8 1.4 52 239-294 278-329 (377)
69 COG0426 FpaA Uncharacterized f 55.9 1.8E+02 0.0038 29.6 11.7 142 134-291 183-339 (388)
70 PRK05749 3-deoxy-D-manno-octul 55.4 65 0.0014 32.1 8.8 101 168-288 49-154 (425)
71 TIGR01470 cysG_Nterm siroheme 54.7 87 0.0019 28.6 8.8 94 168-289 8-102 (205)
72 PRK08574 cystathionine gamma-s 54.6 1.5E+02 0.0033 29.6 11.3 87 191-286 83-172 (385)
73 cd00293 USP_Like Usp: Universa 54.2 1E+02 0.0022 23.9 10.0 58 226-287 67-130 (130)
74 PF03853 YjeF_N: YjeF-related 54.2 1.5E+02 0.0033 25.9 11.8 110 168-286 24-136 (169)
75 PRK01438 murD UDP-N-acetylmura 53.7 72 0.0016 32.6 9.0 71 169-255 16-86 (480)
76 COG2242 CobL Precorrin-6B meth 52.5 87 0.0019 28.5 8.1 75 168-254 34-109 (187)
77 TIGR01426 MGT glycosyltransfer 52.3 42 0.00091 33.1 6.8 32 254-291 92-123 (392)
78 COG1737 RpiR Transcriptional r 52.2 2.2E+02 0.0047 27.2 15.7 119 127-290 92-213 (281)
79 cd01989 STK_N The N-terminal d 50.9 1.4E+02 0.003 24.6 9.9 62 224-288 74-144 (146)
80 cd00287 ribokinase_pfkB_like r 50.3 48 0.001 28.7 6.2 69 200-288 23-91 (196)
81 PRK05973 replicative DNA helic 50.0 1.2E+02 0.0026 28.5 9.1 115 168-292 63-194 (237)
82 TIGR01369 CPSaseII_lrg carbamo 48.0 81 0.0018 36.1 8.9 63 220-287 972-1039(1050)
83 TIGR02429 pcaI_scoA_fam 3-oxoa 47.9 1.7E+02 0.0036 27.3 9.5 99 156-287 11-122 (222)
84 PRK05294 carB carbamoyl phosph 47.8 74 0.0016 36.5 8.6 65 220-290 972-1041(1066)
85 TIGR01437 selA_rel uncharacter 47.8 2.8E+02 0.0062 27.2 12.4 16 271-286 169-184 (363)
86 TIGR01140 L_thr_O3P_dcar L-thr 47.5 89 0.0019 30.1 8.1 87 189-286 76-163 (330)
87 PRK14106 murD UDP-N-acetylmura 47.4 1.1E+02 0.0023 31.0 9.0 80 190-286 18-97 (450)
88 PRK15116 sulfur acceptor prote 47.2 2.7E+02 0.0058 26.7 11.9 42 246-296 120-162 (268)
89 PF02441 Flavoprotein: Flavopr 46.3 20 0.00044 29.9 3.0 106 173-287 3-116 (129)
90 cd03466 Nitrogenase_NifN_2 Nit 46.2 3.4E+02 0.0073 27.6 16.0 95 169-288 300-397 (429)
91 PRK13566 anthranilate synthase 46.2 86 0.0019 34.4 8.4 82 200-288 524-605 (720)
92 CHL00194 ycf39 Ycf39; Provisio 45.9 97 0.0021 29.6 8.1 94 187-290 10-110 (317)
93 PLN02735 carbamoyl-phosphate s 45.8 96 0.0021 35.8 9.1 63 220-287 1007-1074(1102)
94 COG1104 NifS Cysteine sulfinat 45.2 2.4E+02 0.0052 28.6 10.8 106 168-286 61-176 (386)
95 KOG1430 C-3 sterol dehydrogena 44.6 1.2E+02 0.0026 30.5 8.5 106 185-292 12-128 (361)
96 PRK12815 carB carbamoyl phosph 44.3 1E+02 0.0022 35.4 9.0 62 220-287 972-1038(1068)
97 cd01972 Nitrogenase_VnfE_like 44.1 3.6E+02 0.0077 27.3 15.0 86 187-287 303-399 (426)
98 PRK05647 purN phosphoribosylgl 44.0 1.1E+02 0.0025 27.7 7.7 70 187-260 12-94 (200)
99 PRK03359 putative electron tra 43.4 1.7E+02 0.0037 27.8 9.1 88 170-289 57-147 (256)
100 PRK13011 formyltetrahydrofolat 43.3 53 0.0012 31.7 5.7 63 186-254 99-172 (286)
101 PF06849 DUF1246: Protein of u 42.5 29 0.00063 29.4 3.2 85 182-286 2-94 (124)
102 PRK07812 O-acetylhomoserine am 42.2 2.9E+02 0.0063 28.2 11.2 88 191-288 99-192 (436)
103 cd01987 USP_OKCHK USP domain i 42.1 1.8E+02 0.0038 23.2 9.6 62 223-287 57-123 (124)
104 PRK07582 cystathionine gamma-l 41.7 1.2E+02 0.0025 30.1 8.1 72 203-286 90-167 (366)
105 PF00391 PEP-utilizers: PEP-ut 41.4 21 0.00045 27.4 2.1 33 246-289 29-61 (80)
106 KOG0259 Tyrosine aminotransfer 40.9 1.9E+02 0.0041 29.5 9.1 119 149-286 108-237 (447)
107 PF04392 ABC_sub_bind: ABC tra 40.7 25 0.00053 33.6 3.0 37 246-289 183-219 (294)
108 COG2086 FixA Electron transfer 40.7 1.6E+02 0.0036 28.1 8.5 88 170-289 58-146 (260)
109 PF00582 Usp: Universal stress 40.6 39 0.00085 26.7 3.8 42 243-287 98-139 (140)
110 PF11814 DUF3335: Peptidase_C3 40.5 1E+02 0.0022 28.5 6.8 68 191-258 58-141 (207)
111 PLN02476 O-methyltransferase 40.4 2.1E+02 0.0046 27.6 9.3 79 168-257 118-204 (278)
112 PRK05784 phosphoribosylamine-- 40.3 44 0.00095 34.8 4.9 66 193-259 16-81 (486)
113 cd00614 CGS_like CGS_like: Cys 39.7 2.5E+02 0.0055 27.6 10.1 87 190-286 69-160 (369)
114 PRK12475 thiamine/molybdopteri 39.1 3.2E+02 0.0069 26.9 10.6 112 152-288 13-148 (338)
115 PRK09191 two-component respons 38.9 1.9E+02 0.0042 26.2 8.7 95 187-289 119-218 (261)
116 PRK12320 hypothetical protein; 38.8 63 0.0014 35.3 6.0 53 236-290 51-103 (699)
117 TIGR00474 selA seryl-tRNA(sec) 38.6 4.4E+02 0.0096 27.1 11.9 89 195-288 155-252 (454)
118 PLN02828 formyltetrahydrofolat 38.5 1.1E+02 0.0024 29.4 7.0 67 185-254 79-154 (268)
119 COG0451 WcaG Nucleoside-diphos 38.1 1.2E+02 0.0027 28.2 7.3 52 237-290 55-116 (314)
120 PF03162 Y_phosphatase2: Tyros 37.9 33 0.00071 30.3 3.1 47 155-209 80-126 (164)
121 PF04413 Glycos_transf_N: 3-De 37.6 56 0.0012 29.3 4.6 99 170-289 22-126 (186)
122 COG0031 CysK Cysteine synthase 37.6 2.4E+02 0.0053 27.5 9.3 105 79-211 93-205 (300)
123 PF13580 SIS_2: SIS domain; PD 37.3 61 0.0013 27.4 4.6 30 168-202 103-132 (138)
124 PRK15118 universal stress glob 37.3 29 0.00062 28.9 2.5 41 241-287 97-137 (144)
125 PF05368 NmrA: NmrA-like famil 36.9 2.5E+02 0.0055 25.2 9.0 86 192-289 14-102 (233)
126 cd05017 SIS_PGI_PMI_1 The memb 36.5 95 0.0021 25.3 5.5 54 228-290 26-79 (119)
127 PRK04425 Maf-like protein; Rev 36.2 2.3E+02 0.0049 25.9 8.4 78 199-287 23-106 (196)
128 cd06454 KBL_like KBL_like; thi 36.0 3.5E+02 0.0075 25.7 10.2 85 192-287 77-168 (349)
129 TIGR00075 hypD hydrogenase exp 35.9 2.3E+02 0.0051 28.5 8.9 49 234-287 176-224 (369)
130 PRK14364 Maf-like protein; Pro 35.8 1.3E+02 0.0028 27.0 6.7 77 199-286 15-97 (181)
131 PRK05443 polyphosphate kinase; 35.6 68 0.0015 35.0 5.6 48 187-234 380-428 (691)
132 cd05006 SIS_GmhA Phosphoheptos 35.4 3E+02 0.0065 23.9 9.0 32 221-254 121-152 (177)
133 PRK09920 acetyl-CoA:acetoacety 35.3 1.3E+02 0.0028 27.9 6.7 42 156-208 10-52 (219)
134 TIGR00655 PurU formyltetrahydr 35.2 1E+02 0.0023 29.6 6.3 64 185-254 93-167 (280)
135 cd01491 Ube1_repeat1 Ubiquitin 35.2 3.1E+02 0.0067 26.5 9.5 110 153-288 9-137 (286)
136 PRK05939 hypothetical protein; 35.1 1.8E+02 0.004 29.2 8.4 83 191-286 77-166 (397)
137 PRK07810 O-succinylhomoserine 34.8 3.8E+02 0.0082 27.0 10.6 86 191-286 100-190 (403)
138 PLN03209 translocon at the inn 34.8 1.4E+02 0.0031 31.9 7.6 110 168-290 79-208 (576)
139 PRK12342 hypothetical protein; 34.7 3E+02 0.0065 26.1 9.3 92 170-293 54-148 (254)
140 PRK09987 dTDP-4-dehydrorhamnos 34.4 85 0.0018 29.8 5.6 30 264-293 79-108 (299)
141 TIGR01214 rmlD dTDP-4-dehydror 34.3 99 0.0022 28.6 6.0 26 265-290 76-101 (287)
142 PF13090 PP_kinase_C: Polyphos 34.2 50 0.0011 32.9 3.9 50 185-235 48-99 (352)
143 cd00757 ThiF_MoeB_HesA_family 34.1 3.7E+02 0.008 24.6 10.2 58 220-288 80-143 (228)
144 PF05159 Capsule_synth: Capsul 34.0 2.1E+02 0.0046 26.7 8.2 85 187-291 140-228 (269)
145 PRK15062 hydrogenase isoenzyme 33.9 2.8E+02 0.006 27.9 9.1 48 235-287 171-218 (364)
146 COG0424 Maf Nucleotide-binding 33.7 1.5E+02 0.0033 27.1 6.7 74 199-282 21-100 (193)
147 PF02310 B12-binding: B12 bind 33.7 1.6E+02 0.0035 23.4 6.5 74 216-295 16-95 (121)
148 cd05212 NAD_bind_m-THF_DH_Cycl 33.3 2.1E+02 0.0045 24.6 7.3 62 188-255 11-79 (140)
149 PRK15029 arginine decarboxylas 33.2 1.5E+02 0.0032 32.9 7.7 86 204-292 2-96 (755)
150 PRK13010 purU formyltetrahydro 33.2 1.1E+02 0.0025 29.5 6.3 64 185-254 102-176 (289)
151 KOG3349 Predicted glycosyltran 32.8 82 0.0018 27.9 4.6 49 168-229 80-128 (170)
152 PRK12767 carbamoyl phosphate s 32.3 78 0.0017 30.3 5.0 61 191-256 14-78 (326)
153 PRK01372 ddl D-alanine--D-alan 32.1 1.7E+02 0.0036 27.8 7.2 36 221-256 29-65 (304)
154 PF08032 SpoU_sub_bind: RNA 2' 32.0 1.7E+02 0.0037 21.4 5.9 51 192-243 7-58 (76)
155 PRK11337 DNA-binding transcrip 31.9 1.8E+02 0.0038 27.6 7.4 61 222-291 160-224 (292)
156 COG2022 ThiG Uncharacterized e 31.8 3.6E+02 0.0078 25.6 8.9 107 184-293 77-194 (262)
157 cd00578 L-fuc_L-ara-isomerases 31.6 5.7E+02 0.012 26.0 11.4 103 170-287 65-194 (452)
158 PF01113 DapB_N: Dihydrodipico 31.4 2.2E+02 0.0047 23.5 6.9 94 171-291 2-101 (124)
159 TIGR01777 yfcH conserved hypot 31.3 1.7E+02 0.0037 26.9 7.0 37 246-282 56-102 (292)
160 PRK00770 deoxyhypusine synthas 31.2 28 0.0006 35.2 1.7 116 168-290 51-197 (384)
161 cd05005 SIS_PHI Hexulose-6-pho 31.2 1.9E+02 0.004 25.3 6.9 60 221-290 52-111 (179)
162 PRK08462 biotin carboxylase; V 31.0 1.1E+02 0.0025 30.9 6.2 78 170-262 5-91 (445)
163 PF02589 DUF162: Uncharacteris 30.9 40 0.00086 29.9 2.5 52 246-298 83-135 (189)
164 PRK00648 Maf-like protein; Rev 30.8 2.9E+02 0.0062 25.0 8.1 41 247-287 63-106 (191)
165 COG0074 SucD Succinyl-CoA synt 30.6 1.3E+02 0.0029 29.2 6.1 94 188-286 77-174 (293)
166 cd03784 GT1_Gtf_like This fami 30.6 1.4E+02 0.0031 29.2 6.7 33 253-291 103-135 (401)
167 TIGR01325 O_suc_HS_sulf O-succ 30.5 5.4E+02 0.012 25.4 11.0 84 190-286 83-174 (380)
168 PRK05634 nucleosidase; Provisi 30.5 38 0.00083 30.4 2.3 24 264-287 128-151 (185)
169 PLN02206 UDP-glucuronate decar 30.4 1.8E+02 0.0038 29.8 7.4 108 168-290 118-234 (442)
170 PF04321 RmlD_sub_bind: RmlD s 30.2 60 0.0013 30.9 3.8 99 171-296 2-108 (286)
171 PRK06460 hypothetical protein; 29.8 3.2E+02 0.0069 27.1 9.1 58 223-286 104-165 (376)
172 TIGR00853 pts-lac PTS system, 29.8 97 0.0021 24.7 4.3 55 223-288 26-82 (95)
173 PF01975 SurE: Survival protei 29.7 65 0.0014 29.3 3.7 51 240-290 84-134 (196)
174 PRK13937 phosphoheptose isomer 29.4 4E+02 0.0088 23.6 11.1 31 221-253 126-156 (188)
175 PRK05690 molybdopterin biosynt 29.4 4.7E+02 0.01 24.4 10.6 111 152-287 21-153 (245)
176 PRK05967 cystathionine beta-ly 29.3 2.6E+02 0.0057 28.2 8.3 82 192-286 95-184 (395)
177 TIGR01181 dTDP_gluc_dehyt dTDP 29.3 2.7E+02 0.0059 25.8 8.1 97 191-288 14-124 (317)
178 PRK15005 universal stress prot 29.2 62 0.0013 26.7 3.3 39 244-287 104-143 (144)
179 PRK00885 phosphoribosylamine-- 28.9 1.4E+02 0.0029 30.1 6.3 72 171-258 2-73 (420)
180 cd01967 Nitrogenase_MoFe_alpha 28.9 5.9E+02 0.013 25.3 10.8 81 188-288 297-380 (406)
181 PRK15456 universal stress prot 28.8 79 0.0017 26.2 3.9 40 244-287 102-141 (142)
182 PRK10886 DnaA initiator-associ 28.8 4.4E+02 0.0096 23.8 14.7 37 246-289 108-144 (196)
183 PF00072 Response_reg: Respons 28.5 1.2E+02 0.0026 23.3 4.7 79 205-292 1-82 (112)
184 PRK15490 Vi polysaccharide bio 28.4 3.5E+02 0.0077 29.0 9.3 34 202-236 205-238 (578)
185 TIGR01133 murG undecaprenyldip 28.2 3.1E+02 0.0067 25.9 8.4 77 191-286 19-118 (348)
186 cd05005 SIS_PHI Hexulose-6-pho 28.1 4E+02 0.0087 23.1 10.5 32 221-254 95-126 (179)
187 cd01974 Nitrogenase_MoFe_beta 28.0 6.5E+02 0.014 25.5 12.0 96 168-288 302-402 (435)
188 PRK01710 murD UDP-N-acetylmura 27.9 4.3E+02 0.0093 26.9 9.8 77 192-285 29-105 (458)
189 PRK06702 O-acetylhomoserine am 27.9 3.7E+02 0.008 27.5 9.2 83 192-287 92-183 (432)
190 cd06557 KPHMT-like Ketopantoat 27.8 1.1E+02 0.0024 29.1 5.1 75 193-287 4-78 (254)
191 PRK08133 O-succinylhomoserine 27.8 6.2E+02 0.013 25.2 11.2 82 192-286 92-181 (390)
192 PLN02166 dTDP-glucose 4,6-dehy 27.7 2.3E+02 0.005 28.9 7.7 108 168-289 119-234 (436)
193 cd00555 Maf Nucleotide binding 27.5 2.3E+02 0.0051 25.3 6.9 79 199-287 17-101 (180)
194 TIGR03599 YloV DAK2 domain fus 27.4 7.6E+02 0.016 26.1 13.8 102 41-144 53-160 (530)
195 cd00755 YgdL_like Family of ac 27.3 4.8E+02 0.01 24.3 9.2 64 221-295 71-142 (231)
196 cd01523 RHOD_Lact_B Member of 27.2 1.6E+02 0.0035 22.7 5.3 13 168-180 60-72 (100)
197 PRK05613 O-acetylhomoserine am 27.1 6.2E+02 0.013 25.8 10.7 85 193-287 101-191 (437)
198 PRK11557 putative DNA-binding 27.1 2.8E+02 0.0061 25.9 7.8 61 221-290 147-211 (278)
199 COG2518 Pcm Protein-L-isoaspar 27.1 1.8E+02 0.0039 26.9 6.1 87 168-269 72-170 (209)
200 PRK08591 acetyl-CoA carboxylas 27.0 1.7E+02 0.0037 29.6 6.7 77 171-262 4-89 (451)
201 PRK08045 cystathionine gamma-s 27.0 5.8E+02 0.013 25.4 10.3 72 204-286 93-172 (386)
202 PRK00025 lpxB lipid-A-disaccha 26.9 3.4E+02 0.0073 26.3 8.6 70 199-288 217-287 (380)
203 PF13685 Fe-ADH_2: Iron-contai 26.8 21 0.00046 33.8 0.0 85 201-294 20-112 (250)
204 KOG1371 UDP-glucose 4-epimeras 26.8 5.2E+02 0.011 25.8 9.5 29 264-292 102-130 (343)
205 PF01488 Shikimate_DH: Shikima 26.7 1.5E+02 0.0034 24.7 5.3 72 168-254 11-82 (135)
206 PRK10076 pyruvate formate lyas 26.5 1E+02 0.0022 28.4 4.5 81 175-258 6-100 (213)
207 PRK05414 urocanate hydratase; 26.5 4.8E+02 0.01 27.6 9.6 37 85-121 218-255 (556)
208 PTZ00187 succinyl-CoA syntheta 26.5 2.4E+02 0.0051 27.9 7.2 95 187-287 99-199 (317)
209 PRK04056 Maf-like protein; Rev 26.5 4.2E+02 0.0091 23.7 8.3 79 199-287 18-102 (180)
210 TIGR03217 4OH_2_O_val_ald 4-hy 26.5 1.9E+02 0.0041 28.5 6.6 65 169-241 103-169 (333)
211 TIGR01228 hutU urocanate hydra 26.2 5.1E+02 0.011 27.3 9.6 38 84-121 208-246 (545)
212 cd06451 AGAT_like Alanine-glyo 26.1 5.8E+02 0.013 24.3 13.1 61 223-287 92-160 (356)
213 PRK05678 succinyl-CoA syntheta 26.1 3.7E+02 0.008 26.1 8.4 94 187-285 76-173 (291)
214 PRK06084 O-acetylhomoserine am 25.9 2.7E+02 0.0059 28.3 7.9 85 192-286 89-178 (425)
215 PRK07178 pyruvate carboxylase 25.7 1.5E+02 0.0033 30.5 6.0 74 188-262 13-88 (472)
216 PRK00451 glycine dehydrogenase 25.7 3.9E+02 0.0084 26.8 9.0 76 203-286 155-238 (447)
217 TIGR02356 adenyl_thiF thiazole 25.6 4.8E+02 0.01 23.4 8.7 57 221-288 81-143 (202)
218 TIGR02371 ala_DH_arch alanine 25.6 4.8E+02 0.01 25.4 9.2 65 202-272 153-225 (325)
219 PRK06027 purU formyltetrahydro 25.5 1.8E+02 0.0039 28.0 6.2 67 187-259 100-178 (286)
220 COG0616 SppA Periplasmic serin 25.5 1.7E+02 0.0037 28.6 6.0 113 171-292 60-193 (317)
221 PF05706 CDKN3: Cyclin-depende 25.4 1E+02 0.0022 27.5 4.1 12 168-179 132-143 (168)
222 PF01175 Urocanase: Urocanase; 25.2 4.7E+02 0.01 27.6 9.2 123 84-213 207-361 (546)
223 TIGR03458 YgfH_subfam succinat 25.2 8E+02 0.017 25.6 11.4 65 222-287 87-155 (485)
224 PRK11337 DNA-binding transcrip 25.1 5.8E+02 0.013 24.0 10.0 49 203-254 190-238 (292)
225 PRK05968 hypothetical protein; 25.1 6.9E+02 0.015 24.8 11.4 81 193-287 95-183 (389)
226 PRK14571 D-alanyl-alanine synt 25.1 1.5E+02 0.0033 28.1 5.6 39 221-259 25-65 (299)
227 COG2453 CDC14 Predicted protei 24.9 1.3E+02 0.0029 26.6 4.8 21 168-191 104-124 (180)
228 PRK00286 xseA exodeoxyribonucl 24.7 3.5E+02 0.0076 27.4 8.4 83 187-289 146-232 (438)
229 TIGR03705 poly_P_kin polyphosp 24.7 95 0.0021 33.8 4.4 47 187-233 371-418 (672)
230 PRK12388 fructose-1,6-bisphosp 24.5 1.5E+02 0.0032 29.2 5.3 45 195-243 145-192 (321)
231 COG1440 CelA Phosphotransferas 24.5 2E+02 0.0043 23.6 5.2 40 237-287 40-79 (102)
232 PRK08305 spoVFB dipicolinate s 24.3 1.3E+02 0.0027 27.6 4.6 91 190-287 23-127 (196)
233 TIGR01521 FruBisAldo_II_B fruc 24.1 1.7E+02 0.0037 29.3 5.7 102 185-293 25-144 (347)
234 TIGR03127 RuMP_HxlB 6-phospho 24.1 2.8E+02 0.0061 24.0 6.7 59 222-290 50-108 (179)
235 TIGR02852 spore_dpaB dipicolin 24.0 95 0.0021 28.1 3.7 94 191-287 19-122 (187)
236 PF05728 UPF0227: Uncharacteri 23.8 3.5E+02 0.0076 24.3 7.3 34 250-294 61-94 (187)
237 TIGR00715 precor6x_red precorr 23.6 5.9E+02 0.013 24.1 9.2 89 181-287 133-229 (256)
238 cd03377 TPP_PFOR_PNO Thiamine 23.5 7.7E+02 0.017 24.8 11.5 40 171-214 153-192 (365)
239 PRK06886 hypothetical protein; 23.4 2E+02 0.0044 28.3 6.1 67 169-239 207-283 (329)
240 PF14359 DUF4406: Domain of un 23.3 66 0.0014 25.6 2.3 40 246-285 51-90 (92)
241 cd01743 GATase1_Anthranilate_S 23.3 2.4E+02 0.0053 24.7 6.2 66 220-291 14-81 (184)
242 cd05017 SIS_PGI_PMI_1 The memb 23.3 3.7E+02 0.008 21.7 6.9 59 168-239 43-101 (119)
243 cd01979 Pchlide_reductase_N Pc 23.1 1.9E+02 0.0041 29.0 6.0 57 220-287 172-229 (396)
244 PRK00148 Maf-like protein; Rev 23.1 4.5E+02 0.0097 23.8 7.9 78 199-287 19-102 (194)
245 PF03614 Flag1_repress: Repres 23.1 94 0.002 27.3 3.2 26 188-213 108-133 (165)
246 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.0 3.6E+02 0.0078 21.5 6.8 63 221-290 18-82 (126)
247 PF02302 PTS_IIB: PTS system, 23.0 3.4E+02 0.0073 20.5 6.3 34 223-258 23-58 (90)
248 PLN02725 GDP-4-keto-6-deoxyman 23.0 2.7E+02 0.0058 25.9 6.8 53 239-291 41-102 (306)
249 PRK07688 thiamine/molybdopteri 22.9 6.6E+02 0.014 24.7 9.7 56 222-288 87-148 (339)
250 PRK00884 Maf-like protein; Rev 22.8 5E+02 0.011 23.5 8.2 78 199-287 20-103 (194)
251 PRK14362 Maf-like protein; Pro 22.8 4.8E+02 0.01 24.0 8.1 40 248-287 72-114 (207)
252 PRK00311 panB 3-methyl-2-oxobu 22.7 1.5E+02 0.0032 28.4 4.9 76 192-287 6-81 (264)
253 TIGR03127 RuMP_HxlB 6-phospho 22.4 5.1E+02 0.011 22.4 9.7 33 221-255 92-124 (179)
254 PRK09196 fructose-1,6-bisphosp 22.4 1.1E+02 0.0024 30.5 4.1 101 186-293 28-146 (347)
255 PRK13896 cobyrinic acid a,c-di 22.3 3.9E+02 0.0085 27.5 8.2 90 190-291 20-115 (433)
256 PF08484 Methyltransf_14: C-me 22.3 5.3E+02 0.011 22.5 8.2 68 168-255 67-134 (160)
257 PF02601 Exonuc_VII_L: Exonucl 22.2 4.6E+02 0.0099 25.2 8.4 85 187-290 25-116 (319)
258 TIGR02006 IscS cysteine desulf 22.2 7.6E+02 0.017 24.3 12.5 77 203-286 93-177 (402)
259 PRK08248 O-acetylhomoserine am 22.2 6.9E+02 0.015 25.4 10.0 86 192-287 95-185 (431)
260 TIGR01326 OAH_OAS_sulfhy OAH/O 22.2 7.3E+02 0.016 24.9 10.1 88 190-287 86-178 (418)
261 PRK08114 cystathionine beta-ly 22.1 4E+02 0.0088 26.9 8.2 83 192-286 93-184 (395)
262 TIGR03539 DapC_actino succinyl 22.1 3.6E+02 0.0079 26.1 7.7 67 204-286 107-180 (357)
263 PRK14368 Maf-like protein; Pro 22.1 3.1E+02 0.0066 24.9 6.6 77 199-286 23-105 (193)
264 TIGR01019 sucCoAalpha succinyl 22.1 2.8E+02 0.006 26.8 6.7 95 187-286 74-172 (286)
265 COG1088 RfbB dTDP-D-glucose 4, 22.0 4.9E+02 0.011 25.8 8.2 100 182-282 5-117 (340)
266 PRK04694 Maf-like protein; Rev 22.0 4.1E+02 0.0088 24.0 7.4 82 199-287 18-105 (190)
267 COG1167 ARO8 Transcriptional r 21.9 5E+02 0.011 26.6 9.0 91 188-285 166-264 (459)
268 COG0855 Ppk Polyphosphate kina 21.9 1.7E+02 0.0037 31.6 5.5 49 185-234 382-432 (696)
269 cd01516 FBPase_glpX Bacterial 21.8 1.8E+02 0.0039 28.5 5.3 46 194-243 144-192 (309)
270 TIGR01704 MTA/SAH-Nsdase 5'-me 21.8 68 0.0015 29.5 2.3 24 264-287 168-191 (228)
271 PRK00032 Maf-like protein; Rev 21.7 5.1E+02 0.011 23.4 8.0 40 248-287 62-104 (190)
272 PRK10310 PTS system galactitol 21.7 4E+02 0.0088 20.9 6.9 31 224-256 27-59 (94)
273 PF13336 AcetylCoA_hyd_C: Acet 21.7 48 0.001 29.2 1.2 18 338-355 108-125 (154)
274 COG1759 5-formaminoimidazole-4 21.6 84 0.0018 31.1 2.9 84 185-286 25-114 (361)
275 TIGR02113 coaC_strep phosphopa 21.5 1E+02 0.0022 27.6 3.3 22 190-211 17-38 (177)
276 PRK05839 hypothetical protein; 21.5 7.7E+02 0.017 24.1 10.7 70 205-286 111-193 (374)
277 COG0299 PurN Folate-dependent 21.3 4.4E+02 0.0094 24.3 7.3 66 185-254 9-86 (200)
278 PRK05994 O-acetylhomoserine am 21.3 2.8E+02 0.0061 28.1 6.9 86 191-286 93-183 (427)
279 cd01748 GATase1_IGP_Synthase T 21.2 3.3E+02 0.007 24.2 6.7 67 220-291 14-81 (198)
280 cd08512 PBP2_NikA_DppA_OppA_li 21.1 2.3E+02 0.005 28.6 6.3 66 189-254 321-390 (476)
281 PRK07077 hypothetical protein; 21.1 74 0.0016 30.0 2.4 26 262-287 137-162 (238)
282 PRK13936 phosphoheptose isomer 21.0 6E+02 0.013 22.7 12.0 31 221-253 131-164 (197)
283 PLN02509 cystathionine beta-ly 21.0 9.1E+02 0.02 25.0 10.6 84 190-286 161-252 (464)
284 TIGR00330 glpX fructose-1,6-bi 21.0 1.9E+02 0.0042 28.4 5.2 45 195-243 145-192 (321)
285 TIGR03499 FlhF flagellar biosy 20.9 7.3E+02 0.016 23.6 14.5 79 169-253 194-278 (282)
286 cd01965 Nitrogenase_MoFe_beta_ 20.9 8.7E+02 0.019 24.5 15.3 95 168-288 298-396 (428)
287 TIGR01279 DPOR_bchN light-inde 20.9 2.2E+02 0.0048 28.7 6.0 57 220-287 170-227 (407)
288 TIGR03468 HpnG hopanoid-associ 20.8 76 0.0016 29.0 2.4 21 267-287 131-151 (212)
289 COG0771 MurD UDP-N-acetylmuram 20.8 5.9E+02 0.013 26.4 9.1 78 190-285 20-97 (448)
290 PF00148 Oxidored_nitro: Nitro 20.8 8.1E+02 0.018 24.1 15.6 94 169-288 271-366 (398)
291 PF00670 AdoHcyase_NAD: S-aden 20.8 2.7E+02 0.0058 24.7 5.7 62 168-253 22-84 (162)
292 PRK07313 phosphopantothenoylcy 20.8 1.4E+02 0.003 26.8 4.1 23 189-211 17-39 (182)
293 CHL00162 thiG thiamin biosynth 20.8 7.6E+02 0.016 23.8 9.6 72 220-294 129-202 (267)
294 TIGR00877 purD phosphoribosyla 20.8 2.5E+02 0.0053 28.1 6.4 71 171-256 2-73 (423)
295 PF05175 MTS: Methyltransferas 20.7 3.6E+02 0.0079 23.3 6.7 74 168-254 31-105 (170)
296 PRK00377 cbiT cobalt-precorrin 20.7 5E+02 0.011 22.9 7.8 76 168-254 40-118 (198)
297 PF05673 DUF815: Protein of un 20.6 5.5E+02 0.012 24.4 8.2 77 152-237 38-114 (249)
298 COG5017 Uncharacterized conser 20.6 2.3E+02 0.0051 24.8 5.1 54 168-234 65-122 (161)
299 PF10699 HAP2-GCS1: Male gamet 20.6 38 0.00083 23.9 0.3 27 252-278 2-28 (49)
300 PRK09411 carbamate kinase; Rev 20.6 3.2E+02 0.007 26.7 6.7 60 155-230 34-98 (297)
301 PRK05597 molybdopterin biosynt 20.6 8.3E+02 0.018 24.1 11.0 58 220-288 87-150 (355)
302 PF00535 Glycos_transf_2: Glyc 20.5 4.4E+02 0.0095 21.0 6.9 48 187-235 11-59 (169)
303 PRK06234 methionine gamma-lyas 20.4 8.6E+02 0.019 24.2 10.5 82 192-286 95-186 (400)
304 PRK11557 putative DNA-binding 20.2 7.1E+02 0.015 23.2 11.2 32 221-254 195-226 (278)
305 PF00155 Aminotran_1_2: Aminot 20.1 4.4E+02 0.0095 25.2 7.8 94 187-286 78-186 (363)
306 PF04705 TSNR_N: Thiostrepton- 20.1 1.5E+02 0.0032 24.4 3.6 51 191-244 38-89 (115)
307 PRK11778 putative inner membra 20.0 8.6E+02 0.019 24.1 12.6 82 204-292 125-219 (330)
No 1
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-108 Score=773.31 Aligned_cols=333 Identities=50% Similarity=0.736 Sum_probs=320.7
Q ss_pred CeeeEEEeCC-eEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 018280 12 SLQSICYRRG-SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (358)
Q Consensus 12 ~~~~i~~~~~-~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (358)
++++|+|+++ +|.|||||+||++.+|++|++++|++.|||+|+|||||+||++||||+++++++.. ...+.+|+.+.+
T Consensus 2 ~~~~i~w~~~~~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~-~~~~~~e~~~~l 80 (346)
T COG0182 2 KLRPIEWKDDGSVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESK-NDSKGEEFIEAL 80 (346)
T ss_pred CceeEEEcCCCeEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhcc-cccchHHHHHHH
Confidence 5789999888 79999999999999999999999999999999999999999999999999999873 133468999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 018280 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (358)
Q Consensus 91 ~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~ 170 (358)
+++.+.|.++|||++||+|+++||++...+. .+.++.++.+.+++.++.+|+.+.|++|+++|+++|. +++
T Consensus 81 e~a~~~l~~tRPTAvNLfwal~rm~~~~~~~----~~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~-----~~~ 151 (346)
T COG0182 81 EKAAETLKSTRPTAVNLFWALDRMLNAAKEA----IEVKEPKESILQEAEEIAEEDLEANRAIGENGAELLP-----DGD 151 (346)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence 9999999999999999999999999988765 2478899999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCE
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (358)
+||||||+|+|||+||||+++++|.||++||..+||++||||++||+|||+|||.+.|||+|+|+|||+|++|+++.||+
T Consensus 152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~ 231 (346)
T COG0182 152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDA 231 (346)
T ss_pred eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 018280 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (358)
Q Consensus 251 VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~ 330 (358)
|+||||||++||+++||||||++|++||+|||||||++|.++||+...+|++|+||+|||+||+.++ |.+++|++++
T Consensus 232 viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~---g~riap~~v~ 308 (346)
T COG0182 232 VIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVG---GVRIAPEGVE 308 (346)
T ss_pred EEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeec---cEEeCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred eecceeeecCCCCccEEEeCCCCccCC
Q 018280 331 VWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 331 v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
++||+||+||++|||+||||+|+++|.
T Consensus 309 ~yNPAFDvTP~~lItgIITEkGv~~p~ 335 (346)
T COG0182 309 AYNPAFDVTPPELITGIITEKGVFTPP 335 (346)
T ss_pred ccCccccCChHHhcceeeeccceecCc
Confidence 999999999999999999999999985
No 2
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=2.8e-98 Score=724.87 Aligned_cols=327 Identities=56% Similarity=0.824 Sum_probs=313.1
Q ss_pred eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Q 018280 14 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNK 93 (358)
Q Consensus 14 ~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~ 93 (358)
++|+|++++|+|||||+||++++|++|++++|++++||+|+|||||+||++||+||++++++. .+.+++.+.|+++
T Consensus 1 ~~i~~~~~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~~----~~~~~~~~~l~~~ 76 (331)
T TIGR00512 1 RAIKWNRGSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREA----DEREEFKALLEEK 76 (331)
T ss_pred CCEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhhc----CCHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999998874 3678999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc---
Q 018280 94 LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF--- 170 (358)
Q Consensus 94 ~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~--- 170 (358)
+++|.++|||++||+||+++|++.+... .+.+++++.+++.+++|++|+.+++++|+++|+++|. +|+
T Consensus 77 ~~~L~~~RPtavnL~~A~~~~~~~i~~~----~~~~~~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~-----dg~~~~ 147 (331)
T TIGR00512 77 LQYLVSSRPTAVNLSWALDRMRAALEAA----KTVADIKEALLAEAERILEEDLEDNRAIGENGAALIK-----KGVAAP 147 (331)
T ss_pred HHHHHHhCCcHhhHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCC
Confidence 9999999999999999999999887652 4788999999999999999999999999999999999 899
Q ss_pred -EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcC
Q 018280 171 -SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 171 -~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
+||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|+|+|+|.+.|||||+|+|||++|+|++++||
T Consensus 148 ~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd 227 (331)
T TIGR00512 148 LRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVD 227 (331)
T ss_pred ceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999766999
Q ss_pred EEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 018280 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (358)
Q Consensus 250 ~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~ 329 (358)
+|++|||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|+++++|+|+|+|+..+. |.+..++++
T Consensus 228 ~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~---g~~~~~~~~ 304 (331)
T TIGR00512 228 AVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVG---GVRIAPPGI 304 (331)
T ss_pred EEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccC---CcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 556678899
Q ss_pred eeecceeeecCCCCccEEEeCCCCccC
Q 018280 330 SVWNPAFDVTPANLITGIITEKVSVSL 356 (358)
Q Consensus 330 ~v~np~fDvtP~~lIt~iITE~Gi~~~ 356 (358)
+++||+||+|||+|||+||||+|+++|
T Consensus 305 ~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 305 DVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred eeecccccCCCHHHCCEEEccCCccCC
Confidence 999999999999999999999999987
No 3
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=5.4e-98 Score=725.36 Aligned_cols=331 Identities=44% Similarity=0.648 Sum_probs=312.6
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 018280 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (358)
Q Consensus 13 ~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (358)
+++|+|+++.|+|||||+||++++|+.|++++|+++||++|+|||||+||++|++||+++++++. ..+.+++.+.|++
T Consensus 14 ~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~~~--~~~~~~~~~~l~~ 91 (356)
T PRK08334 14 PRSVEYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETSK--AKTKDEFMDGFYK 91 (356)
T ss_pred CccEEEcCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998852 3467899999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 018280 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (358)
Q Consensus 93 ~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (358)
..++|.++|||++||+|++++|++.+.... ..+.+++++.++++++.|++++.++|++|+++|+++|. +|+ |
T Consensus 92 ~~~~L~~~RPTavnL~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~-----dg~-I 163 (356)
T PRK08334 92 AYETLKNTRPTAVNLFWALNRIKKLVEEHL--EDPLDEIKRLIVEEAQKIADEDVEANLRMGHYGAEVLP-----EGN-V 163 (356)
T ss_pred HHHHHHHcCCcHHhHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-E
Confidence 999999999999999999999998876431 24688999999999999999999999999999999999 888 9
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEE
Q 018280 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (358)
Q Consensus 173 LT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~Vi 252 (358)
|||||+|+|||+|||||+++|+.|+++|+.++|||+||||++||+|||||+|.+.|||||+|+|||++|+|++++||+||
T Consensus 164 LTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~Vi 243 (356)
T PRK08334 164 LTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAII 243 (356)
T ss_pred EEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~ 332 (358)
+|||+|++||+++||+|||++|++||+|||||||+||++|||+..++|++++||+|+|+|+..++ |....+ +++++
T Consensus 244 vGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~---~~~~~~-~~~v~ 319 (356)
T PRK08334 244 VGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCG---GCRIAP-DVDVY 319 (356)
T ss_pred ECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheecc---CcccCC-Cccee
Confidence 99999999999999999999999999999999999999999999999999999999999999876 333334 89999
Q ss_pred cceeeecCCCCccEEEeCCCCccCC
Q 018280 333 NPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 333 np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
||+||+|||+|||+||||+|+++|.
T Consensus 320 NPaFDvTPp~lIt~iITE~Gv~~P~ 344 (356)
T PRK08334 320 NPAFDVTPHKYLTGIITDRGVVWPP 344 (356)
T ss_pred cccccCCCHHHCCEEEcCCCccCCc
Confidence 9999999999999999999999875
No 4
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=6.9e-98 Score=726.83 Aligned_cols=330 Identities=48% Similarity=0.708 Sum_probs=315.2
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 018280 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (358)
Q Consensus 13 ~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (358)
+++|.|+++.|+|||||+||++++|+.|++++|+++||++|+|||||+||++||+||+++++++. ..+.+++.+.|++
T Consensus 3 ~~~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~~~--~~~~~~~~~~l~~ 80 (344)
T PRK05720 3 PRPVAWKDGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAIGIAAAYGMALAAREDA--SDDGEEFLKKLEE 80 (344)
T ss_pred cceEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhhcc--CCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998762 3467889999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 018280 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (358)
Q Consensus 93 ~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (358)
++++|.++|||++||+|++++|++.+.+ .+.+++++.+++.+++|++|+.+++++|+++|+++|. +|++|
T Consensus 81 ~~~~L~~~RPtavnL~~ai~~~~~~i~~-----~~~~~~~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 150 (344)
T PRK05720 81 AAAYLAASRPTAVNLFWALDRMREVLAP-----LPGAERKAALEEEAIEIHEEDVEINRAIGEHGLTLIR-----KGQGI 150 (344)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEE
Confidence 9999999999999999999999988754 2578999999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEE
Q 018280 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (358)
Q Consensus 173 LT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~Vi 252 (358)
|||||||+|+|.|||||+++|+.|+++|++|+|||+||||++||+|+|||+|.+.|||||+|+|||++++|++++||+|+
T Consensus 151 LThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~Vi 230 (344)
T PRK05720 151 LTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVI 230 (344)
T ss_pred EEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878899999
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~ 332 (358)
+|||+|++||+++||+|||++|++||+|+|||||+||+||||+.++.|+++++|+|+|+|+..++ |.+..+++++++
T Consensus 231 vGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~---~~~~~~~~v~v~ 307 (344)
T PRK05720 231 VGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVG---GVRIAPEGVKVY 307 (344)
T ss_pred EcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccC---CcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999876 456678899999
Q ss_pred cceeeecCCCCccEEEeCCCCccCC
Q 018280 333 NPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 333 np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
||+||+|||+|||+||||+|+++|+
T Consensus 308 Np~FDvTP~~lIt~iITE~Gv~~p~ 332 (344)
T PRK05720 308 NPAFDVTPAELITGIITEKGIVAPP 332 (344)
T ss_pred cccccCCCHHHCCEEEcCCCccCcc
Confidence 9999999999999999999999885
No 5
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=9.2e-98 Score=726.99 Aligned_cols=334 Identities=37% Similarity=0.559 Sum_probs=316.3
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 018280 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (358)
Q Consensus 13 ~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (358)
+++|+|+++.|+|||||+||++++|++|++++|+++||++|+|||||+||++||+||++++++.. ..+.+++.+.|++
T Consensus 16 ~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaigiaAa~glal~~~~~~--~~~~~~~~~~l~~ 93 (363)
T PRK05772 16 LLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAIGITAGYGMVLALIENN--VKTLDDAIRELTR 93 (363)
T ss_pred CceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998862 3467899999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 018280 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAAT--ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (358)
Q Consensus 93 ~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~ 170 (358)
..++|.++|||++||+|++++|++.+....+. ..+.+++++.+.++++.|++++.+++++|+++|+++|. +|+
T Consensus 94 ~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~-----dg~ 168 (363)
T PRK05772 94 AKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEYDAEIQMGLYGLEKLN-----DGD 168 (363)
T ss_pred HHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC
Confidence 99999999999999999999999988654211 24688999999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccc-cccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcC
Q 018280 171 SVLTHCNTGSLAT-AGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 171 ~ILT~~~sg~lat-~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
+||||||||+||| +||||++++|+.|+++|++|+|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++||
T Consensus 169 ~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd 248 (363)
T PRK05772 169 TVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVN 248 (363)
T ss_pred EEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 018280 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (358)
Q Consensus 250 ~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~ 329 (358)
+||+|||+|++||+++||+|||++|++||+|||||||+||++|||+.++. +++++|+|+|+|+..+. |.+..++++
T Consensus 249 ~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~~~~---~~~~~~~~~ 324 (363)
T PRK05772 249 NVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVRTIR---GVPITPEDV 324 (363)
T ss_pred EEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhcccC---CceecCCCc
Confidence 99999999999999999999999999999999999999999999999877 78999999999998876 566778999
Q ss_pred eeecceeeecCCCCccEEEeCCCCccCC
Q 018280 330 SVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 330 ~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
+++||+||+|||+|||+||||+|+++|.
T Consensus 325 ~v~Np~FDvTP~~lIt~iITE~Gv~~p~ 352 (363)
T PRK05772 325 NVYNPVFDVTPPKYITGIITEKGIIYPP 352 (363)
T ss_pred eeeccCccCCCHHHCCEEEccCCccCCc
Confidence 9999999999999999999999999875
No 6
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=7.4e-97 Score=717.05 Aligned_cols=329 Identities=41% Similarity=0.573 Sum_probs=310.9
Q ss_pred eeeEEEeC--CeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 018280 13 LQSICYRR--GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (358)
Q Consensus 13 ~~~i~~~~--~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (358)
+++|+|++ +.|+|||||+||++++|++|++++|+++|||+|+|||||+||++|||||+++++++ ...+.+++.+.|
T Consensus 1 ~~~i~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~~--~~~~~~~~~~~l 78 (339)
T PRK06036 1 MRTIDWNDESNSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLS--KAKDVDELLKDL 78 (339)
T ss_pred CCcEEEcCCCCeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhc--ccCCHHHHHHHH
Confidence 36899988 99999999999999999999999999999999999999999999999999999875 234778999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 018280 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (358)
Q Consensus 91 ~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~ 170 (358)
++++++|.++|||++||+|+++|+++.+.+ ..+.+++++.++++++++++|+.+++++|+++|+++|. +|+
T Consensus 79 ~~~~~~L~~aRPTavnL~~a~~r~~~~~~~----~~~~~~~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~ 149 (339)
T PRK06036 79 KVAAETLKSTRPTAVNLSWGVDRVLKAALD----AEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLE-----DGD 149 (339)
T ss_pred HHHHHHHHHhCCcHhhHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCC
Confidence 999999999999999999999999875543 24688999999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCE
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (358)
+||||||||+|||+|||||+++|+.|+++||+|+|||+||||++||+|||+|+|.+.|||||+|+|||++|+|++++||+
T Consensus 150 ~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~ 229 (339)
T PRK06036 150 TVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDK 229 (339)
T ss_pred EEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 018280 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (358)
Q Consensus 251 VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~ 330 (358)
||+|||+|++|| ++||+|||++|++||+|||||||+||++|||+....| ++++|+|+|+|+.... |....+++++
T Consensus 230 VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~---~~~~~~~~v~ 304 (339)
T PRK06036 230 VIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCG---KTQIAPKDVP 304 (339)
T ss_pred EEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhcccc---CcccCCCCce
Confidence 999999999997 9999999999999999999999999999999988888 7999999999998876 4556788999
Q ss_pred eecceeeecCCCCccEEEeCCCCccCC
Q 018280 331 VWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 331 v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
++||+||+|||+|||+||||+|+++|.
T Consensus 305 v~Np~FDvTP~~lIt~iITE~Gv~~P~ 331 (339)
T PRK06036 305 VYNPAFDATPMENVTAIITEKGVFYPP 331 (339)
T ss_pred eeCcccccCCHHHCCEEEccCCcccCC
Confidence 999999999999999999999999875
No 7
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-96 Score=677.20 Aligned_cols=342 Identities=60% Similarity=0.875 Sum_probs=323.1
Q ss_pred CCeeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 018280 11 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (358)
Q Consensus 11 ~~~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (358)
++|++|+|++++|++|||++||+|..|+.+++++|.|.+|++|+|||||+||++++++++..++.. ...+.+.+.+.+
T Consensus 1 msL~aI~y~~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaIAivg~Lslaveiq~~--~~~~~ds~~~~i 78 (354)
T KOG1468|consen 1 MSLEAIKYDRGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAIAIVGSLSLAVEIQKK--GFPGSDSLKEFI 78 (354)
T ss_pred CcceeEEecCchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHhhc--cCCchHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999872 234455678999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC-CC
Q 018280 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN-SK 169 (358)
Q Consensus 91 ~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~-~~ 169 (358)
....++|.++|||+|||.|+.+.++..+.+.. .+.+..+++++++.+++++++...|+.|+.+|+++|.+.+++ ++
T Consensus 79 ~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~---~~~~~~~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~k 155 (354)
T KOG1468|consen 79 INKLNFLVSSRPTAVNLANAANELKPIAASED---KSEKAKREKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGK 155 (354)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999887653 344678889999999999999999999999999999988764 45
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcC
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
.+||||||+|||||+||||++++||.+|+.|+..+|||+|||||+||+||||.||....||.|+|+|||+++.|+.++||
T Consensus 156 ltVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vd 235 (354)
T KOG1468|consen 156 LTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVD 235 (354)
T ss_pred eEEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 018280 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (358)
Q Consensus 250 ~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~ 329 (358)
.|++|||||.+|||.+||||||++|++||||||||||++|..++|...++|++|.||+|+|.|++...|.+|.+++++++
T Consensus 236 avvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi 315 (354)
T KOG1468|consen 236 AVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRIAAPGI 315 (354)
T ss_pred EEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeecCCcceEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766788999999
Q ss_pred eeecceeeecCCCCccEEEeCCCCccCC
Q 018280 330 SVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 330 ~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
.||||+||+||++|||+||||+|+|+|.
T Consensus 316 ~vwnPAFDvTPa~LItgIiTe~g~f~~~ 343 (354)
T KOG1468|consen 316 NVWNPAFDVTPAELITGIITEKGVFTPE 343 (354)
T ss_pred CccCccccCCHHHHHHHHhhhccccChH
Confidence 9999999999999999999999999873
No 8
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.3e-94 Score=695.09 Aligned_cols=316 Identities=42% Similarity=0.609 Sum_probs=296.1
Q ss_pred CCCCCeeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHH
Q 018280 8 TDNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAA 87 (358)
Q Consensus 8 ~~~~~~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~ 87 (358)
.+.+++++|+|++++|+|||||+||++++|++|++++|++++|++|+|||||+||++||+||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~~----------- 75 (329)
T PRK06371 7 GETKTLKAVWYEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKNG----------- 75 (329)
T ss_pred CceeeEEEEEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhH-----------
Confidence 456778999999999999999999999999999999999999999999999999999999999987642
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 018280 88 SFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN 167 (358)
Q Consensus 88 ~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~ 167 (358)
+.+.+++++|.++|||++||+|++++|+... .+ .++++++.+|+++.+++|+++|+++|.
T Consensus 76 ~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~-------~~--------~~~a~~~~~e~~~~~~~I~~~g~~~I~----- 135 (329)
T PRK06371 76 ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE-------FD--------MNAARRYAMEIIGRSKKIGEYGNELIK----- 135 (329)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc-------Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 4478889999999999999999999987532 12 456777888999999999999999999
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
+|++||||||||+++|+|||||+++|+.|+++||+|+|||+||||++||+|||||+|.+.||||++|+|||++|+|++++
T Consensus 136 ~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~ 215 (329)
T PRK06371 136 NGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKE 215 (329)
T ss_pred CCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCC
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAAS 327 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~ 327 (358)
||+|++|||+|++||+++||+|||++|++||+||||||||||++|||+....|+++++|+|+|+|++.+. |....|+
T Consensus 216 Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~---g~~~~p~ 292 (329)
T PRK06371 216 IDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEIN---GCRIGPQ 292 (329)
T ss_pred CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccC---CeecCCC
Confidence 9999999999999999999999999999999999999999999999998888999999999999999876 5566788
Q ss_pred CceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 328 GISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 328 ~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
+++++||+||+|||+|||+||||+|+++|+
T Consensus 293 ~~~v~Np~FDvTP~elIt~iITE~Gv~~p~ 322 (329)
T PRK06371 293 ESHARNPAFDVTPNEYVTGFITEYGIFKPN 322 (329)
T ss_pred CccccCcCccCCCHHHCCEEEccCCccChH
Confidence 999999999999999999999999999875
No 9
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=1.6e-84 Score=625.41 Aligned_cols=303 Identities=47% Similarity=0.674 Sum_probs=287.1
Q ss_pred ecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 018280 40 IRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIIS 119 (358)
Q Consensus 40 ~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~ 119 (358)
|++++|++++||+|+|||||+||++|+++|+++++.+ .+.+.+|+.+.|++++++|.++|||+++|.|+++++++.+.
T Consensus 1 ~~~~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~~--~~~~~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~ 78 (303)
T TIGR00524 1 CRTYEDVADAIKSMVVRGAPAIGVAAAYGLALAARKI--ETDNVEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAE 78 (303)
T ss_pred CCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999998875 34578999999999999999999999999999999998875
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC
Q 018280 120 KAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE 199 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~ 199 (358)
+ ..+.+++++.+++.+++|++|+.+++++|+++|+++|. +|++||||||||+|||+||+||+++|+.|+++
T Consensus 79 ~----~~~~~~~k~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~-----~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~ 149 (303)
T TIGR00524 79 N----GESVEEAKESLLREAIEIIEEDLETNRKIGENGAKLIK-----DGDTVLTHCNAGALATSDYGTALGVIRSAWED 149 (303)
T ss_pred c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEEEEecCCccccccCcchHHHHHHHHHHc
Confidence 3 24788999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (358)
|++|+|||+||||++||.++++++|.+.||||++|+||+++|+|++++||+|++|||+|++||+++||+|||++|++||+
T Consensus 150 g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~ 229 (303)
T TIGR00524 150 GKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKE 229 (303)
T ss_pred CCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999655999999999999999999999999999999999
Q ss_pred cCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccC
Q 018280 280 HNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSL 356 (358)
Q Consensus 280 ~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~ 356 (358)
|||||||+||+|||++.++.|+++++|+|+|+|+.... |....+++++++||+||+|||+|||+||||.|+++|
T Consensus 230 ~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~---~~~~~~~~~~v~np~fD~TP~~lIt~iiTe~Gv~~p 303 (303)
T TIGR00524 230 FRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVG---GVRIAPLGVKVYNPAFDITPHDLIDAIITEKGIITP 303 (303)
T ss_pred hCCCEEEecccccccCCCCCccccccccCCHHHhcccc---CcccCCCCceeecccccCCCHHHCCEEEcCCCccCc
Confidence 99999999999999999999999999999999998765 445567899999999999999999999999999987
No 10
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=8.7e-78 Score=579.12 Aligned_cols=289 Identities=36% Similarity=0.463 Sum_probs=272.8
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 018280 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (358)
Q Consensus 42 ~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~ 121 (358)
+++|++++||+|+|||||+||++|+++|++++.+. ++.+.+++++.|+..+++|.++|||+++|+|+++++++.++.
T Consensus 1 ~~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~~--~~~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~- 77 (301)
T TIGR00511 1 DVEETAEKIRSMEIRGAGRIARAAAAALMEQAAKA--ESASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG- 77 (301)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc-
Confidence 57899999999999999999999999999999876 346789999999999999999999999999999999988743
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 018280 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~ 201 (358)
.+.+++++.+++.+++|++++.+++++|+++|+++|. +|++||||||| +||+++|+.|+++|+
T Consensus 78 ----~~~~~~k~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~-----~g~~ILT~~~S--------~tv~~~l~~a~~~~~ 140 (301)
T TIGR00511 78 ----EDVETLRETVIERADAFINQSDKAQERIGEIGAKRIR-----DGDVVMTHCNS--------EAALSVIKTAFEQGK 140 (301)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEECCc--------HHHHHHHHHHHHcCC
Confidence 4788999999999999999999999999999999999 89999999998 799999999999999
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
+|+|||+||||.+|| +++|++|.+.|||||+|+|++++++| ++||+|++|||+|++||+++||+|||++|++||+|+
T Consensus 141 ~f~V~v~EsrP~~~G-~~~a~~L~~~gI~vtlI~Dsa~~~~m--~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~ 217 (301)
T TIGR00511 141 DIEVIATETRPRKQG-HITAKELRDYGIPVTLIVDSAVRYFM--KEVDHVVVGADAITANGALINKIGTSQLALAAREAR 217 (301)
T ss_pred cEEEEEecCCCcchH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhC
Confidence 999999999999999 67899999999999999999999999 889999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 282 iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
|||||+||+|||++.++.|+++++|+|||+|+...++ . ..+++++++||+||+|||+|||+||||+|+++|+
T Consensus 218 vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~~---~-~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~ 289 (301)
T TIGR00511 218 VPFMVAAETYKFHPKTITGELVEIEERDPTEVLDEED---L-KQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPE 289 (301)
T ss_pred CCEEEEcccceecCCCCCCCcccccccCHHHhccccC---c-cCCCCccccCcceecCCHHHCCEEEeCCCcCCcH
Confidence 9999999999999999999999999999999987652 1 3567899999999999999999999999999884
No 11
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=8.6e-77 Score=574.60 Aligned_cols=289 Identities=35% Similarity=0.448 Sum_probs=272.5
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 018280 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (358)
Q Consensus 42 ~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~ 121 (358)
++++++.+|++|+|||||+||++++++|+++++++ .+.+..++++.|+.++++|.++|||+++|+|+++++++...
T Consensus 6 ~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~--~~~~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~~~~~-- 81 (310)
T PRK08535 6 EVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKS--DAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRYYS-- 81 (310)
T ss_pred hHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhc--
Confidence 78999999999999999999999999999999887 45678899999999999999999999999999999987632
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 018280 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~ 201 (358)
..+.+++++.+++.+++|++++.+++++|+++|+++|. +|++||||||| +||+++|+.|+++|+
T Consensus 82 ---~~~~~~~k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~-----~g~~ILT~~~S--------~tv~~~l~~A~~~~k 145 (310)
T PRK08535 82 ---GETVEEARESVIERAEEFIESSENAVEKIGEIGAKRIR-----DGDVIMTHCNS--------SAALSVIKTAHEQGK 145 (310)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEeCCc--------HHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999999999999 89999999998 799999999999999
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
+|+|||+||||.+|| +++|++|.+.|||||+|+|++++++| ++||+|++|||+|++||+++||+|||++|++||+|+
T Consensus 146 ~~~V~v~EsrP~~~G-~~~a~~L~~~GI~vtlI~Dsav~~~m--~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~ 222 (310)
T PRK08535 146 DIEVIATETRPRNQG-HITAKELAEYGIPVTLIVDSAVRYFM--KDVDKVVVGADAITANGAVINKIGTSQIALAAHEAR 222 (310)
T ss_pred eEEEEEecCCchhhH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhC
Confidence 999999999999999 67899999999999999999999999 889999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 282 iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
|||||+||+|||++.++.|.++++|+|||+|+...+ ....+++++++||+||+|||+|||+||||.|+++|+
T Consensus 223 vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~----~~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps 294 (310)
T PRK08535 223 VPFMVAAETYKFSPKTLLGELVEIEERDPTEVLPEE----ILAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPE 294 (310)
T ss_pred CCEEEecccceecCCCCCCCcceecccCHHHhcccc----cccCCCCceeeccCcccCCHHHCCEEEeCCCcCChH
Confidence 999999999999999999999999999999998653 234567899999999999999999999999999884
No 12
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=1.1e-76 Score=561.35 Aligned_cols=269 Identities=26% Similarity=0.307 Sum_probs=250.4
Q ss_pred cChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 018280 41 RDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISK 120 (358)
Q Consensus 41 ~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~ 120 (358)
.++.++++.|++|+|||||+||++||++++++++.. +..++.+.+++..++|.++||||+||.|++++|.
T Consensus 4 ~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~~-----~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~----- 73 (275)
T PRK08335 4 PEVREILEEMKAERIRGASWLAKKGAEAYLLLAEEL-----DGEELENALKELREEIPEVNPTMASLYNLARFIP----- 73 (275)
T ss_pred hHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----
Confidence 468999999999999999999999999999887763 2367889999999999999999999999999872
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC
Q 018280 121 AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200 (358)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g 200 (358)
.++.++.+.+.+++|++++.+++++|+++|+++|. +|++||||||| +||+++|+.|+++|
T Consensus 74 -------~~~~~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~-----~g~~ILTh~~S--------~tv~~~l~~A~~~g 133 (275)
T PRK08335 74 -------ITNNPELVKSRAEEFLRLMEEAKREIGNIGSELID-----DGDVIITHSFS--------SAVLEILKTAKRKG 133 (275)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEECCc--------HHHHHHHHHHHHcC
Confidence 23466778999999999999999999999999999 89999999998 79999999999999
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhc
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (358)
|+|+|||+||||++||++| ||+|.+.||||++|+||+++++| ++||+||+|||+|++||+++||+|||++|++||+|
T Consensus 134 k~~~V~v~EsrP~~qG~~l-a~eL~~~GI~vtlI~Dsa~~~~m--~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~ 210 (275)
T PRK08335 134 KRFKVILTESAPDYEGLAL-ANELEFLGIEFEVITDAQLGLFA--KEATLALVGADNVTRDGYVVNKAGTYLLALACHDN 210 (275)
T ss_pred CceEEEEecCCCchhHHHH-HHHHHHCCCCEEEEeccHHHHHH--HhCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 9999999999999999999 99999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 281 NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 281 ~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
||||||+||+|||++.++.| ++++|+|++ .+++++++||+||+|||+|||+||||+|+++|.
T Consensus 211 ~vPfyV~a~~~k~~~~~~~~-~i~ieer~~--------------~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~ 272 (275)
T PRK08335 211 GVPFYVAAETFKFHPELKSE-EVELVERPY--------------ARQGHRVRNVLFDVTPWKYVRGIITELGILVPP 272 (275)
T ss_pred CCCEEEECccceecccCCCC-CccccccCC--------------CCCCceecCcCccCCCHHHCCEEEccCCccCCC
Confidence 99999999999999998888 789998864 246789999999999999999999999999763
No 13
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-67 Score=496.03 Aligned_cols=286 Identities=32% Similarity=0.384 Sum_probs=267.2
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 018280 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (358)
Q Consensus 42 ~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~ 121 (358)
.+.+..+.|++|++|||.++|++++.+|...++++ .+.+.++|.+.++...+.|.++||++++|.|++|++++.
T Consensus 5 ~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~--~~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~~---- 78 (301)
T COG1184 5 EVDETAEKLKSMEIRGASWIAIAAAEALEILASDS--QAPTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLRD---- 78 (301)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHhc----
Confidence 56788999999999999999999999999999887 456799999999999999999999999999999999872
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 018280 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~ 201 (358)
....+.++.++.+++.++.|+++...+.+.|++.|+++|. ||++|||||+| ++|+.+|+.|++.||
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~-----dg~~IlTh~~S--------~~v~~~l~~A~~~~k 144 (301)
T COG1184 79 -SSGGDKENRRQSLIKAAQEFIDRVEKAKERIAEIGAERIH-----DGDVILTHSFS--------KTVLEVLKTAADRGK 144 (301)
T ss_pred -ccccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----CCCEEEEecCc--------HHHHHHHHHhhhcCC
Confidence 1345788899999999999999999999999999999999 99999999997 899999999999999
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
+|+|||+||||.+||.. +|++|.+.||++++|+||+++++| .+||+|++|||+|++||.++||+||+++|++||+++
T Consensus 145 ~~~V~VtESRP~~eG~~-~ak~L~~~gI~~~~I~Dsa~~~~~--~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~ 221 (301)
T COG1184 145 RFKVIVTESRPRGEGRI-MAKELRQSGIPVTVIVDSAVGAFM--SRVDKVLVGADAILANGALVNKIGTSPLALAARELR 221 (301)
T ss_pred ceEEEEEcCCCcchHHH-HHHHHHHcCCceEEEechHHHHHH--HhCCEEEECccceecCCcEEeccchHHHHHHHHHhC
Confidence 99999999999999965 699999999999999999999999 999999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 282 iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
+||||||++|||.+.++.+....+++||+.|+....+ ..++++.||+||+|||+|||+||||.|+++|+
T Consensus 222 ~Pf~v~aesyKf~p~~~~~~~~~~~~~~~~e~~~~~~-------~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~ 290 (301)
T COG1184 222 VPFYVVAESYKFVPKTLLDTLVEIELRDPLEVAREEP-------LGNLKVRNPAFDVTPPEYIDAIITELGIIPPS 290 (301)
T ss_pred CCEEEEeeeecccccccCCCcceeeccChhhccccCc-------ccCccccccccCCCcHHHhheeeecCCCCCch
Confidence 9999999999999999999999999999999874321 22689999999999999999999999999886
No 14
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=8.6e-67 Score=498.81 Aligned_cols=281 Identities=33% Similarity=0.423 Sum_probs=245.9
Q ss_pred cccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 018280 54 VVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ 133 (358)
Q Consensus 54 ~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~ 133 (358)
+||||+++|++++.+|...+.++ ++.+.++|++.|+.++++|.++||++++|.|+++++++.+.+. ....+.++.++
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~--~~~~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~-~~~~~~~~~~~ 77 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDS--KATTVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKL-DESEDFEEAKQ 77 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHC--HCSSHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHH-HTTSSHHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhh-hcccchHHHHH
Confidence 68999999999999999999987 4678999999999999999999999999999999999977655 34567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCC
Q 018280 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPF 213 (358)
Q Consensus 134 ~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~ 213 (358)
.+++.+++|.+|...++++|++++.++|. +|++|||||+| ++|+.+|+.|+++|++|+|||+||||.
T Consensus 78 ~l~~~i~~~~~e~~~~~~~I~~~~~~~I~-----~~~~ILT~~~S--------~~v~~~l~~a~~~~~~~~V~v~es~P~ 144 (282)
T PF01008_consen 78 SLLEAIDEFLDEIEQAREKIADHASELIN-----DGDTILTHGYS--------STVERFLLSAKKKGKKFRVIVLESRPY 144 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC------TTEEEEEES----------SHHHHHHHHHHHTTEEEEEEEE--TTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-----CCeEEEEeCCc--------hHHHHHHHHHHHcCCeEEEEEccCCcc
Confidence 99999999999999999999999999999 89999999998 789999999999999999999999999
Q ss_pred CcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC-cCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 214 NQGSRLTAFELVHDRIPATLIADSAAAALMKDGR-VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 214 ~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~-vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
+||. .+|++|.+.||+|++|+|++++++| ++ ||+|++|||+|++||+++||+||+++|++||+|+|||||+||+||
T Consensus 145 ~eG~-~~a~~L~~~gi~v~~i~d~~~~~~m--~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K 221 (282)
T PF01008_consen 145 NEGR-LMAKELAEAGIPVTLIPDSAVGYVM--PRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYK 221 (282)
T ss_dssp THHH-THHHHHHHTT-EEEEE-GGGHHHHH--HCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGG
T ss_pred hhhh-hHHHHhhhcceeEEEEechHHHHHH--HHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccccc
Confidence 9995 5699999999999999999999999 66 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccC
Q 018280 293 IDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSL 356 (358)
Q Consensus 293 ~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~ 356 (358)
|++.++.+....+|.++|.|+...+ +....+++++++||.||+|||+|||+||||.|+++|
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~v~~~~---~~~~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 222 FSPRYPLDQDSFNELRDPQEVLPFD---GSSIVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp BETTCSSGGGSSS-B--THHHHEET---TEEESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred ccccccccchhhhhccccceeeccC---CcccccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 9999999998999999999999887 344556799999999999999999999999999998
No 15
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-57 Score=441.46 Aligned_cols=295 Identities=20% Similarity=0.242 Sum_probs=270.0
Q ss_pred HHHHHHh-------ccccCcHHHHHHHHHHHHHHHhhccCCCCC--HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 018280 46 GWSAIRE-------MVVRGAPAIAMAAALSLAVEVFNLNAFSGT--AADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKE 116 (358)
Q Consensus 46 v~~aI~~-------m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~--~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~ 116 (358)
+|.+|-+ ..|.|.+++|+++..+|..++++|.++..+ .++|...|+.++.+|.+|||.+++|+||+|++++
T Consensus 233 IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~ 312 (556)
T KOG1467|consen 233 IHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKN 312 (556)
T ss_pred ccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHH
Confidence 7787765 489999999999999999999999654433 7899999999999999999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHH
Q 018280 117 IISKAAATASEANSVFQAYIEAAEIMLKDD-VATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 195 (358)
Q Consensus 117 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~-~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~ 195 (358)
.|.... ...+..+.++.|.+.+++|++|. +.+.+.|.+++.+.|. ||++||||+.| +++..+|.+
T Consensus 313 eI~~L~-~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~-----dgdviltyg~s--------~vV~~ill~ 378 (556)
T KOG1467|consen 313 EISKLP-ISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQ-----DGDVLLTYGSS--------SVVNMILLE 378 (556)
T ss_pred HHhhCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCEEEEecch--------HHHHHHHHH
Confidence 998874 34566799999999999999876 5799999999999999 99999999865 677789999
Q ss_pred HHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHH
Q 018280 196 LHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (358)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~ 275 (358)
|++.|++|+|+|++|||.+||.++ .+.|.+.||+|+|...++++|+| ..+++||+||++|++||.++.++||.++||
T Consensus 379 A~~~~k~frVvVVDSRP~~EG~~~-lr~Lv~~GinctYv~I~a~syim--~evtkvfLGahailsNG~vysR~GTa~val 455 (556)
T KOG1467|consen 379 AKELGKKFRVVVVDSRPNLEGRKL-LRRLVDRGINCTYVLINAASYIM--LEVTKVFLGAHAILSNGAVYSRVGTACVAL 455 (556)
T ss_pred HHHhCcceEEEEEeCCCCcchHHH-HHHHHHcCCCeEEEEehhHHHHH--HhcceeeechhhhhcCcchhhhcchHHHHH
Confidence 999999999999999999999887 78999999999999999999999 999999999999999999999999999999
Q ss_pred HHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCC-----CccccCCCceeecceeeecCCCCccEEEeC
Q 018280 276 CAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGL-----GEQVAASGISVWNPAFDVTPANLITGIITE 350 (358)
Q Consensus 276 ~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~-----g~~~~~~~~~v~np~fDvtP~~lIt~iITE 350 (358)
+|++|||||+||||+|||+.+.+.+..+.+|..||+.+....|.+ ..|....++...|..||+||||||+++|||
T Consensus 456 vAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe 535 (556)
T KOG1467|consen 456 VANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTE 535 (556)
T ss_pred HhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhh
Confidence 999999999999999999999999988899999999887766421 235667889999999999999999999999
Q ss_pred CCCccCC
Q 018280 351 KVSVSLT 357 (358)
Q Consensus 351 ~Gi~~~t 357 (358)
.|+++||
T Consensus 536 ~g~lp~T 542 (556)
T KOG1467|consen 536 LGMLPPT 542 (556)
T ss_pred ccccCCc
Confidence 9999998
No 16
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-55 Score=402.51 Aligned_cols=272 Identities=24% Similarity=0.313 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHH
Q 018280 61 IAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAA-ATASEANSVFQAYIEAA 139 (358)
Q Consensus 61 i~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~-~~~~~~~~~~~~l~~~~ 139 (358)
-++||..+|+..++.. ...+..||.+.|+++.+.|++.-++.+++..+++.+.+++.... ....+.++.++.+++.+
T Consensus 29 ~~vAAIraL~~vL~~s--~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~erg 106 (313)
T KOG1466|consen 29 MAVAAIRALLEVLRRS--QATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLLERG 106 (313)
T ss_pred hHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 4567778888888876 46889999999999999999999999999999999999997763 35678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH
Q 018280 140 EIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL 219 (358)
Q Consensus 140 ~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rl 219 (358)
+.|+++...++.+|++.+.++|. ||++||||++| ..|+.+|..|+++++.|+|||+||||..+|..|
T Consensus 107 ~~F~~~~~~sR~~IA~l~~~Fi~-----dg~~ILtHg~S--------RvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm 173 (313)
T KOG1466|consen 107 ELFIERARKSRQKIAMLAQDFIT-----DGCTILTHGYS--------RVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLM 173 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhh-----CCCEEEEcchh--------HHHHHHHHHHHhcCceEEEEEecCCCCCchhHH
Confidence 99999999999999999999999 99999999876 567899999999999999999999999999865
Q ss_pred HHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCC
Q 018280 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSS 299 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~ 299 (358)
+++|.+.|||||++.||++||.| .+||+|+||||.|.+||+++|++|||++|++||+.++||||+||++||.+.+|.
T Consensus 174 -~~~L~~~~IPvtlvlDSaVgyvM--e~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPL 250 (313)
T KOG1466|consen 174 -AKELKKLGIPVTLVLDSAVGYVM--ERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPL 250 (313)
T ss_pred -HHHHHhcCCCeEEEehhhHHHHH--hhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccC
Confidence 78999999999999999999999 999999999999999999999999999999999999999999999999998885
Q ss_pred C-CccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 300 G-QEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 300 ~-~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
. .++|.+.+ |-+.... ....+++...+|..|||||+|||++|||.|+++|+
T Consensus 251 nQ~Dlp~~~~-p~~f~~~------~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPS 302 (313)
T KOG1466|consen 251 NQKDLPPALP-PFKFSRP------VPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPS 302 (313)
T ss_pred cccccccccC-CcccCCC------CCcHHhhhhcCCCcccChHHHHHHHHhhccccChh
Confidence 4 45665433 3232211 11224788899999999999999999999999996
No 17
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-52 Score=386.73 Aligned_cols=294 Identities=25% Similarity=0.320 Sum_probs=270.2
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 018280 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (358)
Q Consensus 42 ~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~ 121 (358)
.+.+.+.++|...+||+.+|+...+..|...+.+. .|.+..+|++.++..++.|..+.|+..+.+|.+||+.+.++++
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~--rw~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE 87 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRE--RWSTANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIREE 87 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999888888775 6889999999999999999999999999999999999999877
Q ss_pred hhc---------------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 018280 122 AAT---------------------------------ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS 168 (358)
Q Consensus 122 ~~~---------------------------------~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~ 168 (358)
..+ ..+..++++.+++.++++++|....++.|+..+.++|+ +
T Consensus 88 ~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehih-----s 162 (353)
T KOG1465|consen 88 VLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIH-----S 162 (353)
T ss_pred HHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhc-----c
Confidence 421 01234689999999999999999999999999999999 8
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~v 248 (358)
+++|||++.| .||+.+|+.|.++|++|+|+|.|.-|.+||.. .|+.|.+.||++++|+|++++.+| .+|
T Consensus 163 nEviLT~g~S--------rTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~-~Ak~la~~giettVI~daaVfA~M--srV 231 (353)
T KOG1465|consen 163 NEVILTLGSS--------RTVENFLKHAAKKGRKFRVIVAEGAPNNQGHE-LAKPLAQAGIETTVIPDAAVFAMM--SRV 231 (353)
T ss_pred CceEEecCcc--------HHHHHHHHHHHhccCceEEEEeecCCcccchH-hhHHHHHcCCeeEEeccHHHHHHh--hhc
Confidence 9999999854 79999999999999999999999999999955 588999999999999999999999 999
Q ss_pred CEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCC
Q 018280 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASG 328 (358)
Q Consensus 249 d~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~ 328 (358)
+|||+|+++|++||++....|++++|++||+|.+|||||||.||++|.+|.+.+..++.|.|+++..+.. | .....
T Consensus 232 nKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e--~--~~~~~ 307 (353)
T KOG1465|consen 232 NKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSE--G--DPAGR 307 (353)
T ss_pred ceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccc--c--Ccccc
Confidence 9999999999999999999999999999999999999999999999999999998899999999998863 2 13456
Q ss_pred ceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 329 ISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 329 ~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
+++.||+|||+||||||.|||+.|-+.|+
T Consensus 308 ~~v~nP~fDyvppeLVtLFIsNtgg~~PS 336 (353)
T KOG1465|consen 308 VDVLNPAFDYVPPELVTLFISNTGGVAPS 336 (353)
T ss_pred eeecccccccCChhheeEEEecCCCCChH
Confidence 89999999999999999999999998875
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.1e-51 Score=385.97 Aligned_cols=246 Identities=20% Similarity=0.195 Sum_probs=195.0
Q ss_pred HHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 018280 48 SAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASE 127 (358)
Q Consensus 48 ~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~ 127 (358)
+.|.+.+.+|+.+++.-++.-|. +. . .+ +..++.|.++||.|..+.|.++++++.- ..+
T Consensus 4 ~~~~~d~~~Gs~~~~~~~l~~l~----~~---~---~~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~------~~~ 62 (253)
T PRK06372 4 KDLLSDNASGSADVAFKIISFFS----HN---D---ID-----ENIIKDLKNYFFGMGLVRNVCDSIISGP------NLR 62 (253)
T ss_pred HHhhcCccccHHHHHHHHHHHHh----cc---c---hh-----hhHHHHHHHhCcchHHHHHHHHHHHccC------cCC
Confidence 46788899999999876544332 21 1 11 2377789999999999999988776422 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEE
Q 018280 128 ANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYC 207 (358)
Q Consensus 128 ~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v 207 (358)
+++++..+. .+.+.+++++.++|. +++||||++| +++..+|..+ ++.++|||
T Consensus 63 ~~~~~~~~~-----------~~~~~~~~~A~~~i~------~dvILT~s~S--------~~v~~~l~~~---~~~~~V~v 114 (253)
T PRK06372 63 PKNLKLGIE-----------KHEKMAIEHAKPLFN------DSVIGTISSS--------QVLKAFISSS---EKIKSVYI 114 (253)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHhhcC------CCEEEEeCCc--------HHHHHHHHhc---CCCCEEEE
Confidence 555544332 467778899999996 5899999865 5677777553 34489999
Q ss_pred ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 208 SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 208 ~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+||||++||. ++|++|.+.||+|++|+|++++++| ++||+|++|||+|++||+++||+|||++|++||+|+|||||+
T Consensus 115 ~ESrP~~eG~-~~a~~L~~~GI~vtli~Dsa~~~~m--~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~ 191 (253)
T PRK06372 115 LESRPMLEGI-DMAKLLVKSGIDVVLLTDASMCEAV--LNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSL 191 (253)
T ss_pred ecCCCchHHH-HHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 9999999995 6799999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 288 APLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 288 a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
|++|||++.++.......+.. + . ...+++++++||+||+|||+|||+||||.|+++|+
T Consensus 192 ~~s~Kf~~~~~~~~~~~~~~~-~-----~------~~~~~~l~v~Np~FD~TPpelI~~iITE~Gi~~ps 249 (253)
T PRK06372 192 TISMKIERNFLYSTYPNFKNH-P-----C------SEWNIDIPCINRYFDKTPPDLIDYYINENGFVKPS 249 (253)
T ss_pred eeccccCCCCccccccccccc-c-----c------ccCCCCCceeCcCcCCCCHHHCCEEEcCCCccccc
Confidence 999999977543221101010 0 0 11246799999999999999999999999999986
No 19
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.41 E-value=0.0023 Score=59.43 Aligned_cols=124 Identities=23% Similarity=0.117 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC----eeEEEEecCCCCCcchHHHHHHHHh
Q 018280 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV----LERAYCSETRPFNQGSRLTAFELVH 226 (358)
Q Consensus 151 ~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~----~~~V~v~EsrP~~qG~rlta~eL~~ 226 (358)
++|++.++++|+ +|++|.-- || +|+..+++...+..+ +++|+ +=| ..++.+|.+
T Consensus 3 ~~IA~~A~~~I~-----~g~~I~ld--sG-------ST~~~~~~~L~~~~~~~~l~itvV-t~S-------~~~a~~l~~ 60 (218)
T TIGR00021 3 RAAAEAAAEYVE-----DGMVVGLG--TG-------STVAYFIEALGERVKQEGLDIVGV-PTS-------KQTAELARE 60 (218)
T ss_pred HHHHHHHHHhCC-----CCCEEEEC--Cc-------HHHHHHHHHHHHhhhccCCCEEEE-eCC-------HHHHHHHHH
Confidence 468889999999 89998654 33 467666666654322 34443 211 235667878
Q ss_pred CCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH--HHHHhcCCeEEEeccCccccCCCCCCCccc
Q 018280 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSSGQEIV 304 (358)
Q Consensus 227 ~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ 304 (358)
.|+++. .+-+..++|..|.|||.|-.+++++ |-|.-.+. -+......-|++++.++||..... +..+|
T Consensus 61 ~gi~v~--------~l~~~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg-~~plP 130 (218)
T TIGR00021 61 LGIPLS--------SLDEVPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVASASKRFIVIADESKLVDKLG-KFPLP 130 (218)
T ss_pred CCCCEE--------cHhHCCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHHHhhCcEEEEEEchhhhcccC-CCCcc
Confidence 899985 1111158999999999999998874 54443221 122223457899999999987543 33466
Q ss_pred cc
Q 018280 305 IE 306 (358)
Q Consensus 305 ie 306 (358)
+|
T Consensus 131 vE 132 (218)
T TIGR00021 131 VE 132 (218)
T ss_pred EE
Confidence 66
No 20
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.39 E-value=0.0017 Score=59.98 Aligned_cols=125 Identities=18% Similarity=0.094 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC----CeeEEEEecCCCCCcchHHHHHHHHh
Q 018280 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG----VLERAYCSETRPFNQGSRLTAFELVH 226 (358)
Q Consensus 151 ~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g----~~~~V~v~EsrP~~qG~rlta~eL~~ 226 (358)
++|++.++++|. +|++|.-=+ | +|+..+++...+.. ++++|+ +=| .. ++.+|.+
T Consensus 3 ~~IA~~A~~~I~-----~g~~I~lds--G-------ST~~~l~~~L~~~~~~~~~~itvV-TnS------~~-~a~~l~~ 60 (213)
T cd01398 3 RAAARAAVDYVE-----DGMVIGLGT--G-------STVAYFIEALGERVREEGLNIVGV-PTS------FQ-TEELARE 60 (213)
T ss_pred HHHHHHHHHhCC-----CCCEEEECc--h-------HHHHHHHHHHHHhhhccCCCEEEE-eCc------HH-HHHHHHh
Confidence 568889999999 899986642 2 46776766664432 345554 221 11 3556667
Q ss_pred CCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHH-HHHhcCCeEEEeccCccccCCCCCCCcccc
Q 018280 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSIDLTLSSGQEIVI 305 (358)
Q Consensus 227 ~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~i 305 (358)
.|+++..+- ++.++|+.|+|||.|-.++.+..--|-..+-- +......-+|++++++||...... ..+|+
T Consensus 61 ~~i~vi~lg--------~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~~-~~lPv 131 (213)
T cd01398 61 LGIPLTDLD--------EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGE-FPLPV 131 (213)
T ss_pred CCCeEEeCC--------CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCCC-CCeeE
Confidence 788876554 44689999999999988875543333333221 223456678999999999876542 34666
Q ss_pred c
Q 018280 306 E 306 (358)
Q Consensus 306 e 306 (358)
|
T Consensus 132 E 132 (213)
T cd01398 132 E 132 (213)
T ss_pred E
Confidence 6
No 21
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.20 E-value=0.013 Score=55.69 Aligned_cols=127 Identities=12% Similarity=0.090 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh
Q 018280 147 VATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH 226 (358)
Q Consensus 147 ~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~ 226 (358)
.+..++|++.++++|. +|++|+-=+ | +|+..+.+.+.. .++++|+.. +.. .+.+|.+
T Consensus 75 ~~~K~~IA~~Aa~~I~-----~g~tIfld~--G-------tT~~~la~~L~~-~~~ltVvTn-------sl~-ia~~l~~ 131 (256)
T PRK10434 75 THKKELIAEAAVSLIH-----DGDSIILDA--G-------STVLQMVPLLSR-FNNITVMTN-------SLH-IVNALSE 131 (256)
T ss_pred HHHHHHHHHHHHhhCC-----CCCEEEEcC--c-------HHHHHHHHHhcc-CCCeEEEEC-------CHH-HHHHHhh
Confidence 3456789999999999 899997642 2 466666666543 224555531 112 2455654
Q ss_pred -CC-CCeEEE-----------cchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 227 -DR-IPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 227 -~G-I~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
.+ +.+.++ ....+-..+++-.+|+.|+|++.|..++++...--...+--++-.....+|++|++.||
T Consensus 132 ~~~~~~v~l~GG~~~~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf 211 (256)
T PRK10434 132 LDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKF 211 (256)
T ss_pred CCCCCEEEEECCEEeCCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCccc
Confidence 22 444432 12223345677899999999999988776643322344545555678888999999999
Q ss_pred cCC
Q 018280 294 DLT 296 (358)
Q Consensus 294 ~~~ 296 (358)
...
T Consensus 212 ~~~ 214 (256)
T PRK10434 212 GRK 214 (256)
T ss_pred CCc
Confidence 854
No 22
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.16 E-value=0.0056 Score=56.94 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC---eeEEEEecCCCCCcchHHHHHHHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELV 225 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~---~~~V~v~EsrP~~qG~rlta~eL~ 225 (358)
..++|++.++++|. +|++|.--+ | +|+..+++.+.+..+ +++++ =+ . ..++..|.
T Consensus 6 ~K~~IA~~Aa~lI~-----dg~~IgLgs--G-------ST~~~l~~~L~~~~~~~~~itvV--t~-----S-~~~a~~l~ 63 (220)
T PRK00702 6 LKKAAAEAAAEYVE-----DGMIVGLGT--G-------STAAYFIDALGERVKEGLIIGGV--PT-----S-EASTELAK 63 (220)
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHhhhccCCCEEEE--CC-----c-HHHHHHHH
Confidence 45678899999999 899986642 3 467767766644221 34443 11 1 12456677
Q ss_pred hCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHH--HHHHHhcCCeEEEeccCccccCCCCCCCcc
Q 018280 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL--ALCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (358)
Q Consensus 226 ~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~l--A~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i 303 (358)
+.||++.. +-+-.++|..|.|||.|-.++..+-.-|-..+ -++|+.-+ -+++++..+||..... ...+
T Consensus 64 ~~gi~v~~--------l~~~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~lg-~~~l 133 (220)
T PRK00702 64 ELGIPLFD--------LNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVLG-KFPL 133 (220)
T ss_pred hCCCeEEc--------HHHCCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhcC-CCCc
Confidence 78998651 11115899999999999988876666443332 34444443 4889999999976543 2345
Q ss_pred ccc
Q 018280 304 VIE 306 (358)
Q Consensus 304 ~ie 306 (358)
|+|
T Consensus 134 PvE 136 (220)
T PRK00702 134 PVE 136 (220)
T ss_pred cEE
Confidence 665
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.00 E-value=0.013 Score=51.70 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
+..++|++.++++|. +|++|.-=+ | +|+..+.+.+.. .++++|+-- + .. .+.+|.+.
T Consensus 4 ~~K~~IA~~A~~~I~-----~~~~Ifld~--G-------tT~~~la~~L~~-~~~ltVvTn-s------l~-ia~~l~~~ 60 (161)
T PF00455_consen 4 EEKRAIARKAASLIE-----DGDTIFLDS--G-------TTTLELAKYLPD-KKNLTVVTN-S------LP-IANELSEN 60 (161)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEEC--c-------hHHHHHHHHhhc-CCceEEEEC-C------HH-HHHHHHhc
Confidence 355689999999999 898886543 2 466666666554 225555521 1 12 24556654
Q ss_pred -CCCeEEE-----------cchHHHHhhhcCCcCEEEEcceeeecC-CceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 228 -RIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAAN-GDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 228 -GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~i~~n-G~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
++++.++ ....+-..+++-++|+.++|++.|..+ |-......-..+--+.-.+.--+|+++++.||.
T Consensus 61 ~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~ 140 (161)
T PF00455_consen 61 PNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFG 140 (161)
T ss_pred CceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcC
Confidence 3333322 122333456678999999999999985 555566667777677777788899999999997
Q ss_pred C
Q 018280 295 L 295 (358)
Q Consensus 295 ~ 295 (358)
.
T Consensus 141 ~ 141 (161)
T PF00455_consen 141 R 141 (161)
T ss_pred C
Confidence 4
No 24
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=96.95 E-value=0.014 Score=55.29 Aligned_cols=124 Identities=14% Similarity=0.003 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~- 226 (358)
...+.|++.++++|. +|++|+--| | +|++.+.+.... ++++|+.. +... +..|.+
T Consensus 78 ~~K~~IA~~Aa~~I~-----~g~~Ifld~--G-------sT~~~la~~L~~--~~ltVvTn-------sl~i-a~~l~~~ 133 (251)
T PRK13509 78 DEKVRIAKAASQLCN-----PGESVVINC--G-------STAFLLGRELCG--KPVQIITN-------YLPL-ANYLIDQ 133 (251)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHhCC--CCeEEEeC-------CHHH-HHHHHhC
Confidence 355789999999999 999997754 3 466666666543 24555521 1122 344543
Q ss_pred CCCCeEE-----------EcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccC
Q 018280 227 DRIPATL-----------IADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (358)
Q Consensus 227 ~GI~vtl-----------I~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~ 295 (358)
.++++.+ +.... ...+++-++|+.|+||+.|-.+|-.........+--++-.+..-+|++|++.||..
T Consensus 134 ~~~~v~l~GG~~~~~~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~ 212 (251)
T PRK13509 134 EHDSVIIMGGQYNKSQSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGE 212 (251)
T ss_pred CCCEEEEECCeEcCCcceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCc
Confidence 2333322 22233 35677889999999999998776444444444444445556677899999999985
Q ss_pred C
Q 018280 296 T 296 (358)
Q Consensus 296 ~ 296 (358)
.
T Consensus 213 ~ 213 (251)
T PRK13509 213 R 213 (251)
T ss_pred e
Confidence 4
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=96.84 E-value=0.038 Score=52.84 Aligned_cols=126 Identities=12% Similarity=0.146 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~- 226 (358)
+..++|++.++++|. +|++|+--+ | +|+..+.+.+.. .++++|+.- +.. .+.+|.+
T Consensus 91 ~~K~~IA~~Aa~~I~-----dgd~Ifld~--G-------tT~~~la~~L~~-~~~ltVvTn-------sl~-ia~~l~~~ 147 (269)
T PRK09802 91 AMKRSVAKAAVELIQ-----PGHRVILDS--G-------TTTFEIARLMRK-HTDVIAMTN-------GMN-VANALLEA 147 (269)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEECC--c-------hHHHHHHHhcCc-CCCeEEEeC-------CHH-HHHHHHhC
Confidence 455789999999999 999997643 2 466666666532 335666632 112 2455654
Q ss_pred CCCCeEEE-----------cchHHHHhhhcCCcCEEEEcceeeecCCcee-cccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 227 ~GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~-nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
.++++.++ ....+-..+++-++|+.|+||+.|-.++++. +-.--..+--++-...--+|+++++.||.
T Consensus 148 ~~~~v~llGG~~~~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~ 227 (269)
T PRK09802 148 EGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFN 227 (269)
T ss_pred CCCEEEEECCEEecCCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccC
Confidence 35655433 2333445567789999999999998776664 34444555555555667779999999997
Q ss_pred CC
Q 018280 295 LT 296 (358)
Q Consensus 295 ~~ 296 (358)
..
T Consensus 228 ~~ 229 (269)
T PRK09802 228 RS 229 (269)
T ss_pred Cc
Confidence 53
No 26
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.043 Score=51.99 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
..-+.|++.++++|. +|++|+-- +| +|.+.+.+.... .++++|+.- +... +..|...
T Consensus 76 ~eK~~IA~~Aa~lI~-----~g~~ifld--~G-------TT~~~la~~L~~-~~~ltviTN-------sl~i-a~~l~~~ 132 (253)
T COG1349 76 EEKRAIAKAAATLIE-----DGDTIFLD--AG-------TTTLALARALPD-DNNLTVITN-------SLNI-AAALLEK 132 (253)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEEC--CC-------cHHHHHHHHhCc-CCCeEEEeC-------CHHH-HHHHHhC
Confidence 356689999999999 99999654 43 366655555543 333666532 2232 4456654
Q ss_pred -CCCe-----------EEEcchHHHHhhhcCCcCEEEEcceeeecCCceeccc-ccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 228 -RIPA-----------TLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI-GTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 228 -GI~v-----------tlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nki-GT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
++.+ --+....+-..+++-++|+.++|++.|-.++++...- .-..+.-.+-....-+|+++.++||.
T Consensus 133 ~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~ 212 (253)
T COG1349 133 PNIEVILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFG 212 (253)
T ss_pred CCCeEEEeCcEEEcCCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccC
Confidence 3333 1223444556677889999999999999887676544 44445555556677788899999997
Q ss_pred CC
Q 018280 295 LT 296 (358)
Q Consensus 295 ~~ 296 (358)
..
T Consensus 213 ~~ 214 (253)
T COG1349 213 RV 214 (253)
T ss_pred Cc
Confidence 64
No 27
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=96.49 E-value=0.083 Score=50.05 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~- 226 (358)
+..++|++.++++|. +|++|+--+ | +|++.+.+.+.. .++++|+ +-| .. .+.+|..
T Consensus 76 ~~K~~IA~~Aa~~I~-----~g~tIflD~--G-------tT~~~la~~L~~-~~~ltVv-TNs------l~-ia~~l~~~ 132 (252)
T PRK10906 76 EEKERIARKVASQIP-----NGATLFIDI--G-------TTPEAVAHALLN-HSNLRIV-TNN------LN-VANTLMAK 132 (252)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEEcC--c-------HHHHHHHHHhcC-CCCcEEE-ECc------HH-HHHHHhhC
Confidence 455789999999999 999998754 2 466666666533 2345555 221 11 2445553
Q ss_pred CCCCeEEE-----------cchHHHHhhhcCCcCEEEEcceeeecCCce-ecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 227 ~GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
.++.+.++ ....+-..+++-.+|+.|+|++.|-.+|++ .+-..-..+--.+-....-+|++|+++||.
T Consensus 133 ~~~~villGG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~ 212 (252)
T PRK10906 133 EDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFG 212 (252)
T ss_pred CCCEEEEECCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhC
Confidence 34444332 122233456778999999999999876544 555555666555566677889999999997
Q ss_pred CC
Q 018280 295 LT 296 (358)
Q Consensus 295 ~~ 296 (358)
..
T Consensus 213 ~~ 214 (252)
T PRK10906 213 RN 214 (252)
T ss_pred Cc
Confidence 53
No 28
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=96.27 E-value=0.15 Score=47.96 Aligned_cols=125 Identities=10% Similarity=0.088 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh
Q 018280 147 VATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH 226 (358)
Q Consensus 147 ~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~ 226 (358)
....+.|++.++++|. +|++|.--+ | +|+..+.+.+.. +.++|+.- +.. .+.+|..
T Consensus 77 ~~~K~~IA~~Aa~lI~-----~gd~Ifld~--G-------tT~~~l~~~L~~--~~ltVvTN-------s~~-ia~~l~~ 132 (240)
T PRK10411 77 YAHKADIAREALAWIE-----EGMVIALDA--S-------STCWYLARQLPD--INIQVFTN-------SHP-ICQELGK 132 (240)
T ss_pred HHHHHHHHHHHHHhCC-----CCCEEEEcC--c-------HHHHHHHHhhCC--CCeEEEeC-------CHH-HHHHHhc
Confidence 3456789999999999 899997643 2 466666565542 24555521 111 2444543
Q ss_pred -CCCCeEEE-----------cchHHHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 227 -DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 227 -~GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
.++.+.++ ....+-..+++-++|+.|+|++.|..+|++.+ -.=...+--.+-....-+|+++++.||
T Consensus 133 ~~~~~vil~GG~~~~~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf 212 (240)
T PRK10411 133 RERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKF 212 (240)
T ss_pred CCCCEEEEECCEEeCCCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEecccc
Confidence 34443222 22333344667899999999999987665553 344455555555667777999999999
Q ss_pred cC
Q 018280 294 DL 295 (358)
Q Consensus 294 ~~ 295 (358)
+.
T Consensus 213 ~~ 214 (240)
T PRK10411 213 NR 214 (240)
T ss_pred CC
Confidence 74
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=95.73 E-value=0.24 Score=46.81 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~- 226 (358)
...++|++.++++|. +|++|+.=+ | +|++.+.+.... .++++|+-- ... .+.+|.+
T Consensus 77 ~~K~~IA~~Aa~lI~-----~g~tIflD~--G-------tT~~~la~~L~~-~~~ltvvTn-------sl~-i~~~l~~~ 133 (252)
T PRK10681 77 EEKRRAAQLAATLVE-----PNQTLFFDC--G-------TTTPWIIEAIDN-ELPFTAVCY-------SLN-TFLALQEK 133 (252)
T ss_pred HHHHHHHHHHHhhcC-----CCCEEEEEC--C-------ccHHHHHHhcCC-CCCeEEEEC-------CHH-HHHHHhhC
Confidence 346789999999999 999998754 2 467666666532 224555531 111 2445653
Q ss_pred CCCCeEEE-----------cchHHHHhhhcCCcCEEEEcceeeecCCce-ecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 227 ~GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
.++.+.++ .....-..+++-++|+.|+|++.|-..+++ ..-.--..+.-+.-....-+|++|++.||.
T Consensus 134 ~~~~villGG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~ 213 (252)
T PRK10681 134 PHCRAILCGGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFG 213 (252)
T ss_pred CCCEEEEECcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccC
Confidence 34443332 122223456678999999999999876544 444444555444555567789999999997
Q ss_pred CC
Q 018280 295 LT 296 (358)
Q Consensus 295 ~~ 296 (358)
..
T Consensus 214 ~~ 215 (252)
T PRK10681 214 KV 215 (252)
T ss_pred ce
Confidence 43
No 30
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=93.38 E-value=0.13 Score=41.02 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCC----eEEEcch---H----HHHhhhcCCcCEEEEcceee
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIADS---A----AAALMKDGRVSAVIVGADRV 258 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~----vtlI~Ds---a----~~~~m~~~~vd~VivGAd~i 258 (358)
+.+.+...+.| |++|.+++ ||+.|.+.||+ +.++... . +..+|+++++|+||.=.+.
T Consensus 3 ~~~a~~l~~lG--~~i~AT~g---------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~- 70 (95)
T PF02142_consen 3 VPLAKRLAELG--FEIYATEG---------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP- 70 (95)
T ss_dssp HHHHHHHHHTT--SEEEEEHH---------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T-
T ss_pred HHHHHHHHHCC--CEEEEChH---------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC-
Confidence 34556666666 89998873 78889999999 4444444 2 7788999999999864322
Q ss_pred ecCCceecc-cccHHHHHHHHhcCCeEE
Q 018280 259 AANGDTANK-IGTYSLALCAKFHNILFY 285 (358)
Q Consensus 259 ~~nG~v~nk-iGT~~lA~~Ak~~~iPvy 285 (358)
.--.. ...|.+--+|-.++||.+
T Consensus 71 ----~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 71 ----FSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ----HHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ----CcccccCCcHHHHHHHHHcCCCCc
Confidence 22222 367899999999999975
No 31
>PLN02384 ribose-5-phosphate isomerase
Probab=92.65 E-value=2.5 Score=40.39 Aligned_cols=126 Identities=19% Similarity=0.114 Sum_probs=75.4
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCe--eE-EEEecCCCCCcchHHHHHHHHhCCC
Q 018280 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL--ER-AYCSETRPFNQGSRLTAFELVHDRI 229 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~--~~-V~v~EsrP~~qG~rlta~eL~~~GI 229 (358)
.+..++++++ +|++|=- + || ||+.-+++.+.+..+. ++ +.++-|. ..|+..+.+.||
T Consensus 39 aA~~A~~~V~-----~gmvVGL-G-TG-------STv~~~I~~La~r~~~~~l~~I~~VpTS------~~T~~~a~~~GI 98 (264)
T PLN02384 39 AAYKAVEFVE-----SGMVLGL-G-TG-------STAKHAVDRIGELLRQGKLKNIIGIPTS------KKTHEQAVSLGI 98 (264)
T ss_pred HHHHHHHhcc-----CCCEEEe-c-ch-------HHHHHHHHHHHHhhhhccccceEEEcCc------HHHHHHHHHcCC
Confidence 4455678888 8877532 1 22 3665566655443221 22 4433332 235666778999
Q ss_pred CeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH--HHHHhcCCeEEEeccCccccCCCCC-CCccccc
Q 018280 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSS-GQEIVIE 306 (358)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~a~~~k~~~~~~~-~~~i~ie 306 (358)
|+.-+.+ . .++|..|=|||-|-+|+.++=-=|-..+- ++|. ...-|+++++..|+...... ...+|+|
T Consensus 99 pl~~l~~------v--~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~-~A~~~IiI~DesK~V~~Lg~~~~plPVE 169 (264)
T PLN02384 99 PLSDLDS------H--PVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEG-ACKKFVVIVDESKLVKHIGGSGLAMPVE 169 (264)
T ss_pred cEecccc------C--CcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHH-hcCeEEEEEeCcceecccCCCCCCEEEE
Confidence 9766543 3 78999999999999887665444432211 2222 23478999999999764332 2246666
Q ss_pred c
Q 018280 307 E 307 (358)
Q Consensus 307 ~ 307 (358)
-
T Consensus 170 V 170 (264)
T PLN02384 170 V 170 (264)
T ss_pred E
Confidence 3
No 32
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=92.58 E-value=0.97 Score=37.18 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc------chHHHHhhhc-CCcCEEEEcceeeecCCc
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA------DSAAAALMKD-GRVSAVIVGADRVAANGD 263 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~------Dsa~~~~m~~-~~vd~VivGAd~i~~nG~ 263 (358)
.+.+...+ ..|++|.+++ |++.|.+.||+|+.+. +..+...+++ +++|+||-=. +|.
T Consensus 16 ~~a~~l~~--~G~~i~AT~g---------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~~ 79 (112)
T cd00532 16 DLAPKLSS--DGFPLFATGG---------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DPR 79 (112)
T ss_pred HHHHHHHH--CCCEEEECcH---------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CCC
Confidence 34444443 4588898863 6778999999998762 3557777888 9999998643 333
Q ss_pred ee--cccccHHHHHHHHhcCCeEEEecc
Q 018280 264 TA--NKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 264 v~--nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
-. -....|.+=-+|-.+|||++--..
T Consensus 80 ~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ 107 (112)
T cd00532 80 RDRCTDEDGTALLRLARLYKIPVTTPNA 107 (112)
T ss_pred cccccCCChHHHHHHHHHcCCCEEECHH
Confidence 20 255678888899999999986533
No 33
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=91.83 E-value=1.7 Score=34.08 Aligned_cols=80 Identities=20% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeE-EEc---c--hHHHHhhhcCCcCEEEEcceeeecCCce
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIA---D--SAAAALMKDGRVSAVIVGADRVAANGDT 264 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vt-lI~---D--sa~~~~m~~~~vd~VivGAd~i~~nG~v 264 (358)
.+.+..++. .|++|.+++ |+..|.+.||+|. ++. + ..+...++++++|+||.=.+. .|..
T Consensus 4 ~~~~~l~~l--G~~i~AT~g---------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~ 69 (90)
T smart00851 4 ELAKRLAEL--GFELVATGG---------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQ 69 (90)
T ss_pred HHHHHHHHC--CCEEEEccH---------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccce
Confidence 344555554 488888873 5777899999985 432 1 125667788999999985432 2333
Q ss_pred ecccccHHHHHHHHhcCCeEE
Q 018280 265 ANKIGTYSLALCAKFHNILFY 285 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvy 285 (358)
..+ -.+.+=-+|-.++||.+
T Consensus 70 ~~~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 70 PHE-DGKALRRAAENIDIPGA 89 (90)
T ss_pred ecc-CcHHHHHHHHHcCCCee
Confidence 333 56778889999999975
No 34
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=91.57 E-value=4 Score=38.25 Aligned_cols=125 Identities=18% Similarity=0.035 Sum_probs=75.1
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC--eeEEEEecCCCCCcchHHHHHHHHhCCC
Q 018280 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV--LERAYCSETRPFNQGSRLTAFELVHDRI 229 (358)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~--~~~V~v~EsrP~~qG~rlta~eL~~~GI 229 (358)
..++.++++++ +|++|= .+ || ||+.-+++.+.+..+ .+++.++ |-. .-|+..+.+.||
T Consensus 10 ~aa~~A~~~V~-----~gmvvG-LG-TG-------STv~~~i~~L~~~~~~~~l~i~~V---ptS---~~t~~~a~~~Gi 69 (228)
T PRK13978 10 MTLNDVLSQIN-----GDMTLG-IG-TG-------STMELLLPQMAQLIKERGYNITGV---CTS---NKIAFLAKELGI 69 (228)
T ss_pred HHHHHHHHhCC-----CCCEEE-eC-ch-------HHHHHHHHHHHHHhhccCccEEEE---eCc---HHHHHHHHHcCC
Confidence 45667788898 887752 22 23 366656665543221 2344443 222 224555678899
Q ss_pred CeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH---HHHHhcCCeEEEeccCccccCCCCCCCccccc
Q 018280 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA---LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (358)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA---~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie 306 (358)
|..-+.+ . .++|..|=|||-|-+|+.++ |=|-..+- ++|. ...-|++++..+|+.........+|+|
T Consensus 70 pl~~l~~------~--~~iDiaiDGADevd~~lnlI-KGgGgal~rEKiva~-~A~~~iii~D~sK~v~~Lg~~~plPVE 139 (228)
T PRK13978 70 KICEIND------V--DHIDLAIDGADEVDPSLNII-KGGGGALFREKVIDE-MASRFVVVVDETKIVQYLGETFKLPVE 139 (228)
T ss_pred cEechhh------C--CceeEEEecCceecCCccEE-ecCcHHHHHHHHHHH-hcCcEEEEEeCcceecccCCCCCeEEE
Confidence 9665543 2 68999999999999998777 44443221 2222 234688888999997643322346666
No 35
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=90.75 E-value=0.89 Score=37.49 Aligned_cols=77 Identities=27% Similarity=0.339 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---------hHHHHhhhcCCcCEEEE----cce
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIV----GAD 256 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---------sa~~~~m~~~~vd~Viv----GAd 256 (358)
..+.+.+++. .|++|.++ | |+..|.+.|++|+.+.. ..+--+++++++|+||- |.+
T Consensus 16 ~~~a~~l~~~--G~~i~aT~------g---Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~~ 84 (116)
T cd01423 16 LPTAQKLSKL--GYKLYATE------G---TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGK 84 (116)
T ss_pred HHHHHHHHHC--CCEEEEcc------H---HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCCC
Confidence 3455555554 48888766 3 67889999999988732 44666677899999987 333
Q ss_pred eeecCCceecccccHHHHHHHHhcCCeEE
Q 018280 257 RVAANGDTANKIGTYSLALCAKFHNILFY 285 (358)
Q Consensus 257 ~i~~nG~v~nkiGT~~lA~~Ak~~~iPvy 285 (358)
....+| |.+=-.|-.++||++
T Consensus 85 ~~~~~~--------~~iRr~Av~~~ip~i 105 (116)
T cd01423 85 RVLDND--------YVMRRAADDFAVPLI 105 (116)
T ss_pred ccccCc--------EeeehhhHhhCCccc
Confidence 223344 566678999999996
No 36
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=90.53 E-value=1.1 Score=41.58 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=34.4
Q ss_pred HHhCC-CCeEE-----EcchHHHHh-hhcCCcCEEEEcceeeecCCceeccc
Q 018280 224 LVHDR-IPATL-----IADSAAAAL-MKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 224 L~~~G-I~vtl-----I~Dsa~~~~-m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
|...| -+++. ..|++.++. ++-+++|.-++||=-|-.+|++.|-+
T Consensus 69 linaG~~~vt~~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~ 120 (225)
T COG2057 69 LINAGKQPVTALPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWM 120 (225)
T ss_pred hhhCCCceeEecCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeee
Confidence 44444 56666 557776654 55678999999999999999999964
No 37
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=90.52 E-value=2.4 Score=34.46 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-----chHHHHhhhcCCcCEEEEcceeeecCCce
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-----DSAAAALMKDGRVSAVIVGADRVAANGDT 264 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v 264 (358)
..+.+..++. .+++|.+++ |+..|.+.|++|+.+. +..+...++++++|.||--.+ +.-
T Consensus 16 ~~~~~~l~~~--G~~l~aT~g---------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~-----~~~ 79 (110)
T cd01424 16 VEIAKRLAEL--GFKLVATEG---------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS-----GKR 79 (110)
T ss_pred HHHHHHHHHC--CCEEEEchH---------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC-----CCc
Confidence 3344555554 588888763 5778999999987763 356777778899999988643 211
Q ss_pred ecccccHHHHHHHHhcCCeEEEe
Q 018280 265 ANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
..-..|.+=.+|=.||||++-.
T Consensus 80 -~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 80 -AIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred -cCccHHHHHHHHHHhCCCEEec
Confidence 1234578889999999999854
No 38
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.74 E-value=8 Score=36.16 Aligned_cols=127 Identities=20% Similarity=0.077 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-eeEEEEecCCCCCcchHHHHHHHHhCCC
Q 018280 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRI 229 (358)
Q Consensus 151 ~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~-~~~V~v~EsrP~~qG~rlta~eL~~~GI 229 (358)
+..+..+++++. +|.+|= .+ || ||+..+++.+.+..+ .+.+..+=|. .-|+..+.+.||
T Consensus 8 ~~aa~~A~~~v~-----~gmviG-lG-TG-------ST~~~fI~~Lg~~~~~e~~i~~V~TS------~~t~~l~~~~GI 67 (227)
T COG0120 8 KAAAKAALEYVK-----DGMVIG-LG-TG-------STAAYFIEALGRRVKGELDIGGVPTS------FQTEELARELGI 67 (227)
T ss_pred HHHHHHHHHHhc-----CCCEEE-Ec-Cc-------HHHHHHHHHHHHhhccCccEEEEeCC------HHHHHHHHHcCC
Confidence 345567888898 665553 32 33 478888888753111 1344433332 125667889999
Q ss_pred CeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCccccc
Q 018280 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (358)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie 306 (358)
|+.-+.+ . ..+|..|=|||-|-.++..+=-=|...+= =+-.+...-|+|++..+|+....- ...+|+|
T Consensus 68 ~v~~l~~------~--~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG-~fplPVE 136 (227)
T COG0120 68 PVSSLNE------V--DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLG-KFPLPVE 136 (227)
T ss_pred eecCccc------c--CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcC-CCCcCEE
Confidence 8876544 2 67999999999999998666555543321 133345677899999999965432 2335555
No 39
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=88.85 E-value=3.4 Score=35.78 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=59.0
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC-CCCeEEEc------chHHHHhhhcCCcCEEEEcceeeecC
Q 018280 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD-RIPATLIA------DSAAAALMKDGRVSAVIVGADRVAAN 261 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~-GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~i~~n 261 (358)
+..+.+...+.=..|+++.+++ |++.|.+. |++|+.+. +..+..+++++++|+||-=.|-.-.+
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g---------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~ 89 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT---------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQ 89 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh---------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCCCCC
Confidence 3445555555411478888774 57789999 99998763 23477778899999997654322122
Q ss_pred CceecccccHHHHHHHHhcCCeEEEecc
Q 018280 262 GDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
...-..+.+=-+|-.||||++---.
T Consensus 90 ---~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 90 ---PHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred ---cccchHHHHHHHHHHcCCCEEcCHH
Confidence 1133456777889999999986543
No 40
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=88.67 E-value=1 Score=43.09 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=72.6
Q ss_pred ccccccccHH-HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCC----eEEEcchHHHHhhhcCCcCEEEEcc
Q 018280 181 LATAGYGTAL-GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIADSAAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 181 lat~g~~ta~-~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~----vtlI~Dsa~~~~m~~~~vd~VivGA 255 (358)
|.|+|.|.+- .+++.+.++|...+|.+.+.+|...-. ..+...++. .-+.....+...| ..+|.|+--|
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~----~~~~~~~~~~~~~~Di~d~~~l~~a~--~g~d~V~H~A 74 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL----KDLQKSGVKEYIQGDITDPESLEEAL--EGVDVVFHTA 74 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc----hhhhcccceeEEEeccccHHHHHHHh--cCCceEEEeC
Confidence 4566777763 477888888865666666655543221 123344432 3333345666788 8999999888
Q ss_pred eeeecCC-------ceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 256 DRVAANG-------DTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 256 d~i~~nG-------~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
..+...| .-+|--||-.+--+|+.++|+-+|.+.|...
T Consensus 75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 7776666 2357799999999999999999988776653
No 41
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=81.31 E-value=14 Score=30.52 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=50.8
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEcc------hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIAD------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~D------sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
.|+++.+++ |+..|.+ .||+|+.+.- ..+..+++++++|.||-=-+.. |.-...-=.+.+=
T Consensus 27 Gf~i~AT~g---------Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~---~~~~~~~dg~~iR 94 (115)
T cd01422 27 RHRLVATGT---------TGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPL---TAQPHEPDVKALL 94 (115)
T ss_pred CCEEEEech---------HHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCC---CCCcccccHHHHH
Confidence 577777763 5777888 8999887721 3366777889999997654322 2222123356788
Q ss_pred HHHHhcCCeEEEe
Q 018280 275 LCAKFHNILFYVA 287 (358)
Q Consensus 275 ~~Ak~~~iPvyV~ 287 (358)
.+|-.|+||++-.
T Consensus 95 r~a~~~~Ip~~Tt 107 (115)
T cd01422 95 RLCDVYNIPLATN 107 (115)
T ss_pred HHHHHcCCCEEEc
Confidence 8999999999864
No 42
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=80.01 E-value=21 Score=32.83 Aligned_cols=97 Identities=26% Similarity=0.327 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC------cchHHHHHH
Q 018280 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN------QGSRLTAFE 223 (358)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~------qG~rlta~e 223 (358)
.+.|+.++++.|. ||++|-. |.|.-..+...|.+ ++.+.+ ..|+-... .|.. .. .
T Consensus 3 ~~~Ia~~aA~~i~-----dg~~v~l----------GiGiP~~va~~l~~-~~~l~l-~~E~G~~g~~p~p~~~~~-~~-~ 63 (207)
T TIGR02428 3 RDQIAARAAQELK-----DGDYVNL----------GIGIPTLVANYLPE-GIEVFL-QSENGILGMGPAPEPGEE-DP-D 63 (207)
T ss_pred HHHHHHHHHHhcC-----CCCEEEE----------eecHHHHHHHHHhc-CCeEEE-EEeCceecCccCCCCCCc-CH-H
Confidence 5679999999999 8887743 34533444444443 554433 35543221 0111 11 3
Q ss_pred HHhCCC-CeE------EEcchHHHHhhhcCCcCEEEEcceeeecCCcee
Q 018280 224 LVHDRI-PAT------LIADSAAAALMKDGRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 224 L~~~GI-~vt------lI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~ 265 (358)
|.+.|. +++ ++..+....+++.+.+|..++||=-|=..|.+-
T Consensus 64 l~~~g~~~~~~~~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN 112 (207)
T TIGR02428 64 LINAGKQPVTLLPGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLA 112 (207)
T ss_pred HHhCCCCceeeccCcEEecChhheeeEcCCceeEEEechHHhCCCCccc
Confidence 555543 322 333334444667788999999998888888654
No 43
>PRK09932 glycerate kinase II; Provisional
Probab=74.76 E-value=4.3 Score=40.90 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=38.5
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
..| ..+|+||.|=-++ |.....--..+.+|-.|+.|+||++++|.+...+
T Consensus 280 ~~l--~~ADlVITGEG~~--D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 280 QAV--QGAALVITGEGRI--DSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred HHh--ccCCEEEECCCcc--cccccCCccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 456 8999999997666 3334444556788899999999999999986544
No 44
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.07 E-value=16 Score=29.10 Aligned_cols=56 Identities=20% Similarity=0.078 Sum_probs=37.3
Q ss_pred HHHhCCCCeEEE------cchH--HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIPATLI------ADSA--AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~vtlI------~Dsa--~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|...... ..+. +...+ +++|+||+=.|.|.-+ -+..+--.||.+++||+.+
T Consensus 18 ~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~~vsH~-------~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 18 ILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTDYVSHN-------AMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeCCcChH-------HHHHHHHHHHHcCCcEEEE
Confidence 455555555555 3333 44556 7889999887766433 3455667899999999986
No 45
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=71.15 E-value=16 Score=39.12 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=61.0
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE----cch-HHHHhhhcCCcCEEEEcceeeec-CCc----------e
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLI----ADS-AAAALMKDGRVSAVIVGADRVAA-NGD----------T 264 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI----~Ds-a~~~~m~~~~vd~VivGAd~i~~-nG~----------v 264 (358)
...+|.|+-..=.. |..| ++.|.+.|+++++. +|. .+...++..++|.||=-|--... +-+ -
T Consensus 379 ~~mkiLVtGa~G~i-G~~l-~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~ 456 (668)
T PLN02260 379 PSLKFLIYGRTGWI-GGLL-GKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIR 456 (668)
T ss_pred CCceEEEECCCchH-HHHH-HHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHH
Confidence 34567777655333 7777 56788889888532 232 44556655688998876643210 111 3
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
+|-.||..++-+|+++|+++++....+-|+
T Consensus 457 ~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~ 486 (668)
T PLN02260 457 ANVVGTLTLADVCRENGLLMMNFATGCIFE 486 (668)
T ss_pred HHhHHHHHHHHHHHHcCCeEEEEcccceec
Confidence 789999999999999999988775444443
No 46
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=71.05 E-value=5.9 Score=39.86 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=38.5
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
..+ ..+|+||.|=-++ |.....--....+|-.|+.|+||++++|.+...+
T Consensus 279 ~~l--~~ADlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 279 QKI--KDADLVITGEGRL--DRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHh--cCCCEEEECCCcc--cccccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 456 8899999997666 3334444466788999999999999999987544
No 47
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=70.66 E-value=4.7 Score=35.78 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHhCCCCeEEEcchHHHH-hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+|..|.+.|++|.+..-+++.. -+ +..|+||+||-.- -|..--.++.+.-.-...-.+.|+=+.
T Consensus 21 iA~~L~e~g~qvdi~dl~~~~~~~l--~~ydavVIgAsI~--~~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 21 IASHLRESGIQVDIQDLHAVEEPAL--EDYDAVVIGASIR--YGHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred HHHHhhhcCCeeeeeehhhhhccCh--hhCceEEEecchh--hhhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 4778999999999999999886 34 8999999999643 466667777777777777778886543
No 48
>PLN02778 3,5-epimerase/4-reductase
Probab=69.80 E-value=27 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.2
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccC
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.|-.||..++-+|+++|+++++...+
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 78899999999999999998776433
No 49
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=69.36 E-value=22 Score=32.79 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=45.9
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEE
Q 018280 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (358)
|.|+.+..|..+.++|. +.+ +.|.=++|..++.+. ..+.|||+..+. |..+...+++.++|.++
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~----A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv 83 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEY----ARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVL 83 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHH----HHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEE
Confidence 55777776766666664 333 445566777766442 456799997754 34555667778999998
Q ss_pred Ec-ceeee
Q 018280 253 VG-ADRVA 259 (358)
Q Consensus 253 vG-Ad~i~ 259 (358)
+. -.+++
T Consensus 84 ~agy~~il 91 (207)
T PLN02331 84 LAGYLKLI 91 (207)
T ss_pred EeCcchhC
Confidence 84 34433
No 50
>PRK10342 glycerate kinase I; Provisional
Probab=68.10 E-value=7.4 Score=39.22 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=38.4
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
..| ..+|+||.|==++ |.....--....+|-.||.|+||++++|.+...+
T Consensus 280 ~~l--~~ADLVITGEG~~--D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 280 EHI--HDCTLVITGEGRI--DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred HHh--ccCCEEEECCCcC--cccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 456 8899999996655 3444444556778899999999999999986554
No 51
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=68.05 E-value=7 Score=38.97 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=37.0
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccC
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~ 295 (358)
..+ +.+|+||.|=-|+=+. ++.-|+ ...+|-+||.|+|||+++|.+.+-+.
T Consensus 280 ~~v--~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~~ 330 (378)
T COG1929 280 DAV--KDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGEDY 330 (378)
T ss_pred Hhh--ccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecccccCc
Confidence 456 8999999997777322 222222 45578899999999999999866543
No 52
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=67.69 E-value=62 Score=25.89 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=38.2
Q ss_pred HHhCCCCeEEEc--c----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 224 LVHDRIPATLIA--D----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 224 L~~~GI~vtlI~--D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.+.|+++..+. . ..+..+.++.++|.|++|...=...+ ---.|+-.-. +.++-+.||.|+
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCchHHH-HHhcCCCCEEEe
Confidence 456788877554 2 24445556678999999987432211 1125664444 467888999875
No 53
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=67.61 E-value=8.3 Score=31.48 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=52.0
Q ss_pred EEEEecCCCcccccccccHHHHHHH-HHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcC
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRA-LHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~-a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
.||..++. -=+..|-. +.+..+..+||+.-..|..+. +.+ .+++..-.-..+..+.++.++|
T Consensus 2 kVLviGsG---------gREHAia~~l~~s~~v~~v~~aPGN~G~~~-------~~~-~~~~~~~d~~~l~~~a~~~~id 64 (100)
T PF02844_consen 2 KVLVIGSG---------GREHAIAWKLSQSPSVEEVYVAPGNPGTAE-------LGK-NVPIDITDPEELADFAKENKID 64 (100)
T ss_dssp EEEEEESS---------HHHHHHHHHHTTCTTEEEEEEEE--TTGGG-------TSE-EE-S-TT-HHHHHHHHHHTTES
T ss_pred EEEEECCC---------HHHHHHHHHHhcCCCCCEEEEeCCCHHHHh-------hce-ecCCCCCCHHHHHHHHHHcCCC
Confidence 57777642 22444544 344455679999877554321 111 1222111123455566789999
Q ss_pred EEEEcceeeecCCceecccccHHHHHHHHhcCCeEE
Q 018280 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (358)
Q Consensus 250 ~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvy 285 (358)
+||+|-+.-+.+| ++=.-+..|||++
T Consensus 65 lvvvGPE~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 65 LVVVGPEAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp EEEESSHHHHHTT----------HHHHHHHTT-CEE
T ss_pred EEEECChHHHHHH----------HHHHHHHCCCcEE
Confidence 9999999999999 7777788898876
No 54
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=66.35 E-value=73 Score=30.38 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=65.0
Q ss_pred cHHHHHHH---HHHCCCeeEEE-EecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCc
Q 018280 188 TALGVIRA---LHSEGVLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD 263 (358)
Q Consensus 188 ta~~~l~~---a~~~g~~~~V~-v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~ 263 (358)
|+...+.. .+.+|+.-+|+ |.+| .+ ++.++.+.|||+....+ .+.+|+.|=|||-+-+|..
T Consensus 53 tv~~~v~~i~q~l~~~~l~~vvgVPts------~~-s~q~~~~~gi~l~~~d~--------hp~iDlaidgADEvd~nln 117 (261)
T KOG3075|consen 53 TVVYAVDRIGQLLFDGDLGNVVGVPTS------FR-SAQLALEYGIPLSDLDS--------HPVIDLAIDGADEVDENLN 117 (261)
T ss_pred HHHHHHHHHHHHhcCCCcCceEecccc------hh-hHHHHHhcCCccccCCC--------CceeEEEecCchhhCcCcc
Confidence 55444433 35556644444 4443 23 46678899999876543 4899999999999999987
Q ss_pred eecccccHHH-HHHHHhcCCeEEEeccCccccCCCC-CCCc-cccc
Q 018280 264 TANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLS-SGQE-IVIE 306 (358)
Q Consensus 264 v~nkiGT~~l-A~~Ak~~~iPvyV~a~~~k~~~~~~-~~~~-i~ie 306 (358)
.+=--|-... -..=--..+.|+|++...|+.+..- .+.. +|+|
T Consensus 118 ~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvE 163 (261)
T KOG3075|consen 118 LIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVE 163 (261)
T ss_pred eEEeccchhhHHHHHHHhhhceEEEeeccccchhhcccccCceeee
Confidence 7654443221 1122224567899999999885422 2233 5555
No 55
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=64.80 E-value=15 Score=34.63 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHH---HHCC--C--eeEEEEecCC--CCCcchHHHHHHHHhCCCCeE-EEc-c
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRAL---HSEG--V--LERAYCSETR--PFNQGSRLTAFELVHDRIPAT-LIA-D 236 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a---~~~g--~--~~~V~v~Esr--P~~qG~rlta~eL~~~GI~vt-lI~-D 236 (358)
++.++|- | |+|-.|+...++.| .+.+ . ++.|+-++-. |...+---.+++|.+.|+.|- |++ |
T Consensus 61 ~~~~lLP--N-----TaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D 133 (247)
T PF05690_consen 61 SGYTLLP--N-----TAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD 133 (247)
T ss_dssp CTSEEEE--E------TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred cCCEECC--c-----CCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC
Confidence 4667763 3 23556887766544 3432 2 4445544432 444443335778999999875 444 6
Q ss_pred hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 237 sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
-.++.-+..-.+..|.-.+-=|-+|=++.|+ +.+-++..+.+|||+|=+..-+.
T Consensus 134 ~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~---~~l~~i~~~~~vPvIvDAGiG~p 187 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNP---YNLRIIIERADVPVIVDAGIGTP 187 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBSSSTTT---SSTH---HHHHHHHHHGSSSBEEES---SH
T ss_pred HHHHHHHHHCCCCEEEecccccccCcCCCCH---HHHHHHHHhcCCcEEEeCCCCCH
Confidence 6777777667777888777777777778886 88999999999999997765543
No 56
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=63.28 E-value=22 Score=34.35 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHHhhhcCCcCEEEEcceeeecCCc--------eecccccHHHHHHHHhcCCeEEEeccCccccCC
Q 018280 239 AAALMKDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPLTSIDLT 296 (358)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~ 296 (358)
+..++++.+.|.||--|--..-|+. -+|-.|+..+|.+|++.|.|++-+..-|-||-.
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~ 107 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGE 107 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCC
Confidence 4455555567777766544433432 388999999999999999999998888888754
No 57
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=62.09 E-value=21 Score=28.60 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=54.7
Q ss_pred ccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhc---CCcCEEEEcceeeec
Q 018280 185 GYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD---GRVSAVIVGADRVAA 260 (358)
Q Consensus 185 g~~ta-~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~---~~vd~VivGAd~i~~ 260 (358)
|||.. ..+++.+.+.+ ..|++.|..|.. ..++.+.|+++.+ -|..=...+++ .+++.|++..+
T Consensus 5 G~g~~~~~i~~~L~~~~--~~vvvid~d~~~------~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGG--IDVVVIDRDPER------VEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp S-SHHHHHHHHHHHHTT--SEEEEEESSHHH------HHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred cCCHHHHHHHHHHHhCC--CEEEEEECCcHH------HHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccC----
Confidence 55654 44666666633 678888877653 4678888977554 45444444433 45667766655
Q ss_pred CCceecccccHHHHHHHHh-cC-CeEEEecc
Q 018280 261 NGDTANKIGTYSLALCAKF-HN-ILFYVAAP 289 (358)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~-~~-iPvyV~a~ 289 (358)
|...+..+++.||. ++ +++++.+.
T Consensus 72 -----~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 -----DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp -----SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred -----CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 66778889999998 43 56666544
No 58
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=59.66 E-value=36 Score=34.35 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCeEEEcchHH---HHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 218 RLTAFELVHDRIPATLIADSAA---AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 218 rlta~eL~~~GI~vtlI~Dsa~---~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.|...-|.+.||+|+.+-.... ...| +.+--+|+ ++.|..=+.-+-. --.+|-+||+||+|++|=
T Consensus 116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI-~~nTkavf--~EtigNP~~~v~D--ie~ia~iAh~~gvpliVD 183 (426)
T COG2873 116 NLFSHTLKRLGIEVRFVDPDDPENFEAAI-DENTKAVF--AETIGNPGLDVLD--IEAIAEIAHRHGVPLIVD 183 (426)
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHh-CcccceEE--EEeccCCCccccC--HHHHHHHHHHcCCcEEEe
Confidence 4556668899999998864442 3334 13334444 3455433322333 335889999999999984
No 59
>PRK00208 thiG thiazole synthase; Reviewed
Probab=59.51 E-value=76 Score=30.20 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=64.8
Q ss_pred cccccHHHHHHHHH---HCC--C--eeEEEEecC--CCCCcchHHHHHHHHhCCCCeE-EEcchHH-HHhhhcCCcCEEE
Q 018280 184 AGYGTALGVIRALH---SEG--V--LERAYCSET--RPFNQGSRLTAFELVHDRIPAT-LIADSAA-AALMKDGRVSAVI 252 (358)
Q Consensus 184 ~g~~ta~~~l~~a~---~~g--~--~~~V~v~Es--rP~~qG~rlta~eL~~~GI~vt-lI~Dsa~-~~~m~~~~vd~Vi 252 (358)
+|-.|+...++.|+ +.+ . ++.|+-++- -|...+.--.+++|.+.|+.+- |++|+-. +.-+..-.++.|.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vm 149 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVM 149 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeC
Confidence 34567776655443 322 2 556665543 2333332224678999999998 8876643 3444445666665
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
..+.-|-+|-++.| -+.+..+.+..++||++=+.-.+.
T Consensus 150 Plg~pIGsg~gi~~---~~~i~~i~e~~~vpVIveaGI~tp 187 (250)
T PRK00208 150 PLGAPIGSGLGLLN---PYNLRIIIEQADVPVIVDAGIGTP 187 (250)
T ss_pred CCCcCCCCCCCCCC---HHHHHHHHHhcCCeEEEeCCCCCH
Confidence 55555555555556 556777777789999998765553
No 60
>PRK02947 hypothetical protein; Provisional
Probab=59.23 E-value=1.6e+02 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCeEEEcchHH-----------HHhhhcCCcCEEEEc
Q 018280 220 TAFELVHDRIPATLIADSAA-----------AALMKDGRVSAVIVG 254 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa~-----------~~~m~~~~vd~VivG 254 (358)
.++.+.+.|+++..|+++.- ..+. ..+|.|+.-
T Consensus 125 ~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~--~~ad~~l~~ 168 (246)
T PRK02947 125 MALEAKERGAKVIAVTSLAYSASVASRHSSGKRLA--EVADVVLDN 168 (246)
T ss_pred HHHHHHHCCCEEEEEcCCcccccccccCCCcCchh--HhCCEEEEc
Confidence 36678899999999999763 4555 567877743
No 61
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=58.01 E-value=47 Score=30.03 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=39.5
Q ss_pred cccHHH-HHHHHHHCCCeeEEEE-ecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEEE
Q 018280 186 YGTALG-VIRALHSEGVLERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 186 ~~ta~~-~l~~a~~~g~~~~V~v-~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (358)
.|+.+. ++....+.+....|.+ .=.||..++. ....+.|||+..+. |..+...++..++|.+++
T Consensus 10 ~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~----~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 10 NGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL----ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred CChhHHHHHHHHHcCCCCceEEEEEECCccchHH----HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 355554 4444444444444432 3344554332 23567899998765 345566677788998877
Q ss_pred cc-eeee
Q 018280 254 GA-DRVA 259 (358)
Q Consensus 254 GA-d~i~ 259 (358)
-. ..++
T Consensus 86 ~~~~~il 92 (190)
T TIGR00639 86 AGFMRIL 92 (190)
T ss_pred eCcchhC
Confidence 43 3443
No 62
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=57.90 E-value=1.2e+02 Score=31.09 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=39.7
Q ss_pred CCcCEEEEcce-eeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCC
Q 018280 246 GRVSAVIVGAD-RVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (358)
Q Consensus 246 ~~vd~VivGAd-~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~ 298 (358)
-.+|.-|.||+ +|+.+|.+++-.|.-+.-+++ ..-.-++++.+..|+.+...
T Consensus 180 ~~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 180 LSADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred hcCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCHH
Confidence 47999999999 999999999999888854444 33444556788888876643
No 63
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=57.10 E-value=15 Score=33.80 Aligned_cols=76 Identities=25% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCC-CeEEEc-chHHHHhhhc
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIA-DSAAAALMKD 245 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI-~vtlI~-Dsa~~~~m~~ 245 (358)
.|++||=.+ || +||.|++ |.... |+..+|+-.|-.|.+-. .....|.+.|+ +++++. |...++- ..
T Consensus 72 pg~~VLeIG-tG----sGY~aAl--la~lv--g~~g~Vv~vE~~~~l~~--~A~~~l~~~~~~nv~~~~gdg~~g~~-~~ 139 (209)
T PF01135_consen 72 PGDRVLEIG-TG----SGYQAAL--LAHLV--GPVGRVVSVERDPELAE--RARRNLARLGIDNVEVVVGDGSEGWP-EE 139 (209)
T ss_dssp TT-EEEEES--T----TSHHHHH--HHHHH--STTEEEEEEESBHHHHH--HHHHHHHHHTTHSEEEEES-GGGTTG-GG
T ss_pred CCCEEEEec-CC----CcHHHHH--HHHhc--CccceEEEECccHHHHH--HHHHHHHHhccCceeEEEcchhhccc-cC
Confidence 789999876 33 3677653 33322 66678999998876532 22345888888 577766 6665543 34
Q ss_pred CCcCEEEEcc
Q 018280 246 GRVSAVIVGA 255 (358)
Q Consensus 246 ~~vd~VivGA 255 (358)
...|.++++|
T Consensus 140 apfD~I~v~~ 149 (209)
T PF01135_consen 140 APFDRIIVTA 149 (209)
T ss_dssp -SEEEEEESS
T ss_pred CCcCEEEEee
Confidence 6788888875
No 64
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=56.98 E-value=21 Score=36.45 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=45.0
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEcchHHHHhhhcCCc
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATLIADSAAAALMKDGRV 248 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~Dsa~~~~m~~~~v 248 (358)
..||..+..| .-..+...+++.+...+||+ -|.+.|. +. +.. ..+++...--.++..+.++.++
T Consensus 5 ~kvLviG~g~--------rehal~~~~~~~~~~~~~~~---~pgn~g~---~~-~~~~~~~~~~~~d~~~l~~~a~~~~i 69 (426)
T PRK13789 5 LKVLLIGSGG--------RESAIAFALRKSNLLSELKV---FPGNGGF---PD-DELLPADSFSILDKSSVQSFLKSNPF 69 (426)
T ss_pred cEEEEECCCH--------HHHHHHHHHHhCCCCCEEEE---ECCchHH---hc-cccccccCcCcCCHHHHHHHHHHcCC
Confidence 6789887642 33345566666666678887 5666553 21 111 1122222233344555667789
Q ss_pred CEEEEcceeeecCC
Q 018280 249 SAVIVGADRVAANG 262 (358)
Q Consensus 249 d~VivGAd~i~~nG 262 (358)
|.|++|.+..+..|
T Consensus 70 D~Vv~g~E~~l~~g 83 (426)
T PRK13789 70 DLIVVGPEDPLVAG 83 (426)
T ss_pred CEEEECCchHHHHH
Confidence 99999987765444
No 65
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=56.86 E-value=19 Score=32.22 Aligned_cols=78 Identities=19% Similarity=0.134 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH--HHHHhcCCeEEEeccCccccCCC
Q 018280 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTL 297 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~a~~~k~~~~~ 297 (358)
|+..+.+.|||++-..+- .++|..|=|||-|-.|...+ |-|.-.+- =+......-|+++++..|+....
T Consensus 10 T~~~a~~~Gi~l~~~~~~--------~~iDl~iDGaDevd~~l~lI-KGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 10 TELLARKLGIPLVDLDEV--------DRIDLAIDGADEVDPDLNLI-KGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp HHHHHHHTT-EBE-GGGS--------SSEEEEEEE-SEEETTSEEE---TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred HHHHHHHcCCcEEccccC--------CcceEEEECchhhcCCCCEE-ECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 556678899988765442 78999999999999998777 44443222 13334566778889999998765
Q ss_pred CCCCcccccc
Q 018280 298 SSGQEIVIEE 307 (358)
Q Consensus 298 ~~~~~i~ie~ 307 (358)
. ...+|+|-
T Consensus 81 g-~~plPvEV 89 (173)
T PF06026_consen 81 G-KFPLPVEV 89 (173)
T ss_dssp T-SS-EEEEE
T ss_pred C-CCceeEEE
Confidence 4 33466653
No 66
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=56.72 E-value=73 Score=30.26 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=61.6
Q ss_pred cccccHHHHHHHH---HHCC--C--eeEEEEecC--CCCCcchHHHHHHHHhCCCCeE-EEcchH-HHHhhhcCCcCEEE
Q 018280 184 AGYGTALGVIRAL---HSEG--V--LERAYCSET--RPFNQGSRLTAFELVHDRIPAT-LIADSA-AAALMKDGRVSAVI 252 (358)
Q Consensus 184 ~g~~ta~~~l~~a---~~~g--~--~~~V~v~Es--rP~~qG~rlta~eL~~~GI~vt-lI~Dsa-~~~~m~~~~vd~Vi 252 (358)
+|-.++...++.| .+.+ . ++.|+-++- -|.....--.+++|.+.|+.+- |+.|+- .+.-+..-.++.|.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vm 149 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVM 149 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeC
Confidence 3446776655444 3322 2 444543322 1222222224678999999998 777654 44444445566665
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
..+.-|-+|-++.| -..+..+.+..++||++=+.-.+
T Consensus 150 Plg~pIGsg~Gi~~---~~~I~~I~e~~~vpVI~egGI~t 186 (248)
T cd04728 150 PLGSPIGSGQGLLN---PYNLRIIIERADVPVIVDAGIGT 186 (248)
T ss_pred CCCcCCCCCCCCCC---HHHHHHHHHhCCCcEEEeCCCCC
Confidence 55555555555555 56667777778999998766554
No 67
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=56.08 E-value=18 Score=29.82 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHhCCCCeEEEc--chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 221 AFELVHDRIPATLIA--DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 221 a~eL~~~GI~vtlI~--Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+.+|.+.|..+..+. |-+...+.....+..|++..| +.--....-..-.+-.+.+++|++++++..
T Consensus 10 ~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 10 AEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 557888888888877 445666666689999999988 111111111222345666899999998855
No 68
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=55.90 E-value=6.1 Score=39.80 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
.-..+ .++|+||.|=-++ |.....--....+|-+|+.|+||++++|.+...+
T Consensus 278 l~~~l--~~aDlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERL--EDADLVITGEGRL--DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHC--CC-SEEEE--CEC--STTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHh--cCCCEEEECcccc--ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 34557 8999999997664 3333333345667888999999999999876654
No 69
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=55.90 E-value=1.8e+02 Score=29.59 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHH-----HHHH--HHHHCCC--eeE
Q 018280 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTAL-----GVIR--ALHSEGV--LER 204 (358)
Q Consensus 134 ~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~-----~~l~--~a~~~g~--~~~ 204 (358)
.++...+.|++.....+.+....+.+.+. + ..|=.+|++ +|.+. .++. .-|.++. ..-
T Consensus 183 ~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~-----~-l~i~~IaP~-------HG~i~~~~~~~i~~~Y~~W~~~~~~~~V 249 (388)
T COG0426 183 ELLPDMRKYYANLMAPNARLVLWALKKIK-----L-LKIEMIAPS-------HGPIWRGNPKEIVEAYRDWAEGQPKGKV 249 (388)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHhhhc-----c-cCccEEEcC-------CCceeeCCHHHHHHHHHHHHccCCcceE
Confidence 67788888888888888887777777776 3 345556665 33332 2222 2233333 322
Q ss_pred EEEecCCCCCcchHH---HHHHHHhCCCCeEEEcchH--HHHhhhc-CCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 205 AYCSETRPFNQGSRL---TAFELVHDRIPATLIADSA--AAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 205 V~v~EsrP~~qG~rl---ta~eL~~~GI~vtlI~Dsa--~~~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
+++-.|--.+- .+| .|..|.+.|+.|.++-++. ...++.. .+++.+++|.-.+ |++..-++++..--+.+.
T Consensus 250 ~l~Y~smyg~T-~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~ 326 (388)
T COG0426 250 DLIYDSMYGNT-EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLAL 326 (388)
T ss_pred EEEEecccCCH-HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhc
Confidence 33334433332 222 2556888999988876544 4444311 5789999998777 678999999999988887
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
.+.....++.++|
T Consensus 327 ~~~~k~~~vfgS~ 339 (388)
T COG0426 327 APKNKLAGVFGSY 339 (388)
T ss_pred cCcCceEEEEecc
Confidence 7655445555555
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.38 E-value=65 Score=32.14 Aligned_cols=101 Identities=23% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-ch--HHHHhh
Q 018280 168 SKFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-DS--AAAALM 243 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~-ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-Ds--a~~~~m 243 (358)
.|..|-.||-|. |-- .+..+++.+.+++...+|.++=+-|. |.++ +.++...++++.+.| |. .+..++
T Consensus 49 ~~~~iW~Ha~s~-----Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~--~~~~-~~~~~~~~~~~~~~P~d~~~~~~~~l 120 (425)
T PRK05749 49 KGPLIWFHAVSV-----GETRAAIPLIRALRKRYPDLPILVTTMTPT--GSER-AQALFGDDVEHRYLPYDLPGAVRRFL 120 (425)
T ss_pred CCCeEEEEeCCH-----HHHHHHHHHHHHHHHhCCCCcEEEeCCCcc--HHHH-HHHhcCCCceEEEecCCcHHHHHHHH
Confidence 456788998662 211 23345666667777788877655433 4555 334555578888777 43 556677
Q ss_pred hcCCcCEEEEc-ceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 244 KDGRVSAVIVG-ADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 244 ~~~~vd~VivG-Ad~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
++-+.|.|++. .| +..| +...|+..|+|+++..
T Consensus 121 ~~~~Pd~v~~~~~~-~~~~-----------~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 121 RFWRPKLVIIMETE-LWPN-----------LIAELKRRGIPLVLAN 154 (425)
T ss_pred HhhCCCEEEEEecc-hhHH-----------HHHHHHHCCCCEEEEe
Confidence 77888988653 11 1112 3345788999999863
No 71
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=54.71 E-value=87 Score=28.55 Aligned_cols=94 Identities=23% Similarity=0.217 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.|..||..+- | ..+..-++.+.+.|-.+.|+-.+..| .+ .+|.+.| .++++.-.--...+ ..
T Consensus 8 ~gk~vlVvGg-G-------~va~rk~~~Ll~~ga~VtVvsp~~~~-----~l--~~l~~~~-~i~~~~~~~~~~dl--~~ 69 (205)
T TIGR01470 8 EGRAVLVVGG-G-------DVALRKARLLLKAGAQLRVIAEELES-----EL--TLLAEQG-GITWLARCFDADIL--EG 69 (205)
T ss_pred CCCeEEEECc-C-------HHHHHHHHHHHHCCCEEEEEcCCCCH-----HH--HHHHHcC-CEEEEeCCCCHHHh--CC
Confidence 3556777652 1 23455667777778777766544332 22 3566777 77777643323334 56
Q ss_pred cCEEEEcceeeecCCce-ecccccHHHHHHHHhcCCeEEEecc
Q 018280 248 VSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
.++|+.. -|+- .|. .++..|+..|+||.++-.
T Consensus 70 ~~lVi~a------t~d~~ln~----~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 70 AFLVIAA------TDDEELNR----RVAHAARARGVPVNVVDD 102 (205)
T ss_pred cEEEEEC------CCCHHHHH----HHHHHHHHcCCEEEECCC
Confidence 6666543 3332 443 688899999999998854
No 72
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=54.60 E-value=1.5e+02 Score=29.55 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-c-hHHHHhhhcCCcCEEEEcceeee-cCCceecc
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-D-SAAAALMKDGRVSAVIVGADRVA-ANGDTANK 267 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-D-sa~~~~m~~~~vd~VivGAd~i~-~nG~v~nk 267 (358)
.++....+.|. +|++. .|.+.+..-....+...|+++..+. | ..+...++..+..+|++ +... .+|.++.
T Consensus 83 ~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i--e~p~NPtG~v~d- 155 (385)
T PRK08574 83 TLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI--ETMTNPTLKVID- 155 (385)
T ss_pred HHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--ECCCCCCCEecC-
Confidence 34444444453 45554 4555443222233466788887642 2 33444453225555554 3332 2454544
Q ss_pred cccHHHHHHHHhcCCeEEE
Q 018280 268 IGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 268 iGT~~lA~~Ak~~~iPvyV 286 (358)
+ -.++-+||++|++++|
T Consensus 156 l--~~I~~la~~~gi~liv 172 (385)
T PRK08574 156 V--PEVAKAAKELGAILVV 172 (385)
T ss_pred H--HHHHHHHHHcCCEEEE
Confidence 2 3677789999999986
No 73
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=54.20 E-value=1e+02 Score=23.94 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=34.5
Q ss_pred hCCCCeEEE--cc---hHHHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEe
Q 018280 226 HDRIPATLI--AD---SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 226 ~~GI~vtlI--~D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
..|++++.. .. ..+....+..++|.|++|+..- +.... -.|+..- -+.+..++|++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~---~~~~~~~~~~~~~-~ll~~~~~pvliv 130 (130)
T cd00293 67 EAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGR---SGLRRLLLGSVAE-RVLRHAPCPVLVV 130 (130)
T ss_pred cCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCC---CccceeeeccHHH-HHHhCCCCCEEeC
Confidence 368876543 22 2445555678899999998643 22222 3344333 3446688898864
No 74
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=54.16 E-value=1.5e+02 Score=25.94 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=61.3
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc-hHHHHHHHHhCCCCeEEE-cchHHHHhhhc
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLI-ADSAAAALMKD 245 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG-~rlta~eL~~~GI~vtlI-~Dsa~~~~m~~ 245 (358)
.+..|+..|-.|-=. |-.+..-|+++++|.+..|+.....+.... .+.-...+.+.|+++... .+......+
T Consensus 24 ~~~~v~il~G~GnNG----gDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-- 97 (169)
T PF03853_consen 24 KGPRVLILCGPGNNG----GDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEAL-- 97 (169)
T ss_dssp TT-EEEEEE-SSHHH----HHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHG--
T ss_pred CCCeEEEEECCCCCh----HHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccc--
Confidence 457788887554211 233445688888899988877755443332 222223466788776643 344444455
Q ss_pred CCcCEEEEcceeeecCCceecccccHH-HHHHHHhcCCeEEE
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYS-LALCAKFHNILFYV 286 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~-lA~~Ak~~~iPvyV 286 (358)
...|.|| |+++-.|--=.--|.+. +.-.+..++.|++-
T Consensus 98 ~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 98 EPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp SCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred ccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 5888886 66776663333334333 33356677777554
No 75
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.71 E-value=72 Score=32.65 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=41.0
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~v 248 (358)
+..|+..+-. ++-+.+.+.+.+.|. +|.+.|.++......+ ...|.+.||++..=.+.. .. ..+
T Consensus 16 ~~~v~viG~G--------~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~-~~~l~~~gv~~~~~~~~~---~~--~~~ 79 (480)
T PRK01438 16 GLRVVVAGLG--------VSGFAAADALLELGA--RVTVVDDGDDERHRAL-AAILEALGATVRLGPGPT---LP--EDT 79 (480)
T ss_pred CCEEEEECCC--------HHHHHHHHHHHHCCC--EEEEEeCCchhhhHHH-HHHHHHcCCEEEECCCcc---cc--CCC
Confidence 4567666532 122334455556664 6888887765333222 456888998875433222 22 568
Q ss_pred CEEEEcc
Q 018280 249 SAVIVGA 255 (358)
Q Consensus 249 d~VivGA 255 (358)
|.||++.
T Consensus 80 D~Vv~s~ 86 (480)
T PRK01438 80 DLVVTSP 86 (480)
T ss_pred CEEEECC
Confidence 8888765
No 76
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=52.47 E-value=87 Score=28.50 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=50.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcC-
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDG- 246 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~- 246 (358)
+|+.++..+- |.|++ .+..| ..+..-+||..|..|. ..+++.+.+.+.|++--.+.-..+.-++..-
T Consensus 34 ~g~~l~DIGa-------GtGsi--~iE~a-~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 34 PGDRLWDIGA-------GTGSI--TIEWA-LAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLP 101 (187)
T ss_pred CCCEEEEeCC-------CccHH--HHHHH-HhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCC
Confidence 7899998762 23433 22333 4577889999998876 4466778899999986666666666666322
Q ss_pred CcCEEEEc
Q 018280 247 RVSAVIVG 254 (358)
Q Consensus 247 ~vd~VivG 254 (358)
+.|.+++|
T Consensus 102 ~~daiFIG 109 (187)
T COG2242 102 SPDAIFIG 109 (187)
T ss_pred CCCEEEEC
Confidence 46777666
No 77
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=52.27 E-value=42 Score=33.10 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.6
Q ss_pred cceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 254 GAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+.|.|..|. .++..+++|+.+|||++..++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 455555554 34556788999999999887654
No 78
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=52.22 E-value=2.2e+02 Score=27.16 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEE
Q 018280 127 EANSVFQAYIEAAEIMLKDDVA-TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERA 205 (358)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~e~~~-a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V 205 (358)
+..++.+.+++.....+++..+ ....--+.++++|. +-.+|.-++ -| .|..++
T Consensus 92 ~~~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~-----~A~rI~~~G-~g------~S~~vA-------------- 145 (281)
T COG1737 92 GPESILEKLLAANIAALERTLNLLDEEALERAVELLA-----KARRIYFFG-LG------SSGLVA-------------- 145 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----cCCeEEEEE-ec------hhHHHH--------------
Confidence 3444555555555555555433 23444456677777 445565554 11 121111
Q ss_pred EEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHh-h-hcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCe
Q 018280 206 YCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAAL-M-KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNIL 283 (358)
Q Consensus 206 ~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~-m-~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iP 283 (358)
.. .++.|...|++|.++.|....+. + .-++=|.||+ |.-.|. .-=+...+-.||++|+|
T Consensus 146 -----------~~-~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~----iS~sG~---t~e~i~~a~~ak~~ga~ 206 (281)
T COG1737 146 -----------SD-LAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIA----ISFSGY---TREIVEAAELAKERGAK 206 (281)
T ss_pred -----------HH-HHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCc
Confidence 12 35678899999999999887751 1 1144455543 223342 22355678899999999
Q ss_pred EEEeccC
Q 018280 284 FYVAAPL 290 (358)
Q Consensus 284 vyV~a~~ 290 (358)
++.++.+
T Consensus 207 vIaiT~~ 213 (281)
T COG1737 207 VIAITDS 213 (281)
T ss_pred EEEEcCC
Confidence 9998764
No 79
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=50.95 E-value=1.4e+02 Score=24.57 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHhCCCCeEEEc--c-hHH---HHhhhcCCcCEEEEcceeeecCCceecc-cccHHHHHHHHhcC--CeEEEec
Q 018280 224 LVHDRIPATLIA--D-SAA---AALMKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHN--ILFYVAA 288 (358)
Q Consensus 224 L~~~GI~vtlI~--D-sa~---~~~m~~~~vd~VivGAd~i~~nG~v~nk-iGT~~lA~~Ak~~~--iPvyV~a 288 (358)
+.+.|+++..+. . +.. -.+.++.++|++++|+..- |.+.-. .|+.--.-+.++-. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 334677654333 2 322 2233567899999999864 333222 35444455678888 9999974
No 80
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=50.29 E-value=48 Score=28.74 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (358)
+...++--.+.+|...|... |.-|++.|+++.++. +|.+.-+|..-.+--...++-.|++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~-a~~l~~LG~~~~~~~-------------------~~~v~i~~~~~~~~~~~~~~~~~~~ 82 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANV-AVALARLGVSVTLVG-------------------ADAVVISGLSPAPEAVLDALEEARR 82 (196)
T ss_pred CCeEEeceeeecCCCcHHHH-HHHHHHCCCcEEEEE-------------------ccEEEEecccCcHHHHHHHHHHHHH
Confidence 33344444456677767664 778999999999988 4444444432211223345557888
Q ss_pred cCCeEEEec
Q 018280 280 HNILFYVAA 288 (358)
Q Consensus 280 ~~iPvyV~a 288 (358)
+|+|+++=.
T Consensus 83 ~~~~v~~D~ 91 (196)
T cd00287 83 RGVPVVLDP 91 (196)
T ss_pred cCCeEEEeC
Confidence 999977643
No 81
>PRK05973 replicative DNA helicase; Provisional
Probab=49.96 E-value=1.2e+02 Score=28.50 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=60.1
Q ss_pred CCcEEEEecCCCcccccccccH--HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeE-------EE----
Q 018280 168 SKFSVLTHCNTGSLATAGYGTA--LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-------LI---- 234 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta--~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vt-------lI---- 234 (358)
.|..++..+++|+ |= |. +.++..+.++|.+.-.+-.|-.|. .+ ..++...|++.. +.
T Consensus 63 ~Gsl~LIaG~PG~----GK-T~lalqfa~~~a~~Ge~vlyfSlEes~~----~i-~~R~~s~g~d~~~~~~~~~~d~~d~ 132 (237)
T PRK05973 63 PGDLVLLGARPGH----GK-TLLGLELAVEAMKSGRTGVFFTLEYTEQ----DV-RDRLRALGADRAQFADLFEFDTSDA 132 (237)
T ss_pred CCCEEEEEeCCCC----CH-HHHHHHHHHHHHhcCCeEEEEEEeCCHH----HH-HHHHHHcCCChHHhccceEeecCCC
Confidence 6778888887753 22 44 456676766776655555565543 22 223455565421 11
Q ss_pred --cchHHHHhhhcCCcCEEEEcceeeecCCceeccccc--HHHHHHHHhcCCeEEEeccCcc
Q 018280 235 --ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGT--YSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 235 --~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT--~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
.|..+..+.++.+.+.||+-.=..+..+.--...+. ..+-..||++|+|++++++...
T Consensus 133 ~~~~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 133 ICADYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred CCHHHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 122233333334567666632111211100012222 3356789999999999987654
No 82
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=47.97 E-value=81 Score=36.08 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHhCCCCeEEEc---c--hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPATLIA---D--SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~---D--sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
||+-|.+.||+|+.+. + ..+--+++++++|+||-=. ..|.- .....|.+=.+|=.+|||++--
T Consensus 972 ta~~l~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~----~~~~~-~~~~g~~iRr~Ai~~~ip~~t~ 1039 (1050)
T TIGR01369 972 TAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTT----SKGAG-TATDGYKIRREALDYGVPLITT 1039 (1050)
T ss_pred HHHHHHHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECC----CCCcc-cccccHHHHHHHHHcCCCEEec
Confidence 5777889999988763 1 2355677889999997632 11221 2345688889999999999843
No 83
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=47.87 E-value=1.7e+02 Score=27.30 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE
Q 018280 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCSETRPFNQGSRLTAFELVHDRIPATLI 234 (358)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g-~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI 234 (358)
.++++|+ ||++|..-++. +++....+++...++| ++++++-.-.-....|.. .|...|
T Consensus 11 eAv~~I~-----DG~ti~~gGf~------~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g~~----~L~~~G------ 69 (222)
T TIGR02429 11 EAVSVIP-----DGATIMIGGFG------TAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLA----ALLKAG------ 69 (222)
T ss_pred HHHhhCC-----CCCEEEECCcC------CccCcHHHHHHHHhcCCCCcEEEecCCCCCCccHH----HHHhCC------
Confidence 3455788 99999775543 2356677777777766 468877643322112321 233433
Q ss_pred cchHHHHhhhcCCcCEEEEcc---------eeeecCCce---ecccccHHHHHHHHhcCCeEEEe
Q 018280 235 ADSAAAALMKDGRVSAVIVGA---------DRVAANGDT---ANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 235 ~Dsa~~~~m~~~~vd~VivGA---------d~i~~nG~v---~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+++.|- -+...+|.+ .-.-||....+-|-..|+||+..
T Consensus 70 ------------~Vkr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 70 ------------QVRKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred ------------CEeEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 344433330 011122222 22678888899999999998864
No 84
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=47.84 E-value=74 Score=36.47 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCeEEEcc-----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 220 TAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~D-----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|++-|.+.||+|+.+.. ..+--+++++++|+||--.. |.- .....|.+=.+|=.+|||++--..+
T Consensus 972 T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~-----~~~-~~~~g~~iRr~Av~~~ip~~T~~~~ 1041 (1066)
T PRK05294 972 TAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPT-----GRQ-AIRDGFSIRRAALEYKVPYITTLAG 1041 (1066)
T ss_pred HHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCC-----Ccc-cccccHHHHHHHHHcCCCEEecHHH
Confidence 57778899999888763 33566677899999987643 311 2345688889999999999964433
No 85
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=47.77 E-value=2.8e+02 Score=27.23 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCeEEE
Q 018280 271 YSLALCAKFHNILFYV 286 (358)
Q Consensus 271 ~~lA~~Ak~~~iPvyV 286 (358)
-.++-+||.||+|+++
T Consensus 169 ~~i~~~a~~~gi~viv 184 (363)
T TIGR01437 169 EDAAQVAQEHNLPLIV 184 (363)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 4578899999999987
No 86
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=47.55 E-value=89 Score=30.13 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH-HHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
++..+..+...| +|++. .|.+.+... .+...|+++..++|.. +...+ .+.+.|++- .-=-.-|.+...
T Consensus 76 ~i~~~~~~l~~g---~vl~~--~p~y~~~~~---~~~~~g~~~~~~~d~~~l~~~~--~~~~~v~i~-~p~NPtG~~~~~ 144 (330)
T TIGR01140 76 AIYLLPRLLAPG---RVLVL--APTYSEYAR---AWRAAGHEVVELPDLDRLPAAL--EELDVLVLC-NPNNPTGRLIPP 144 (330)
T ss_pred HHHHHHHHhCCC---eEEEe--CCCcHHHHH---HHHHcCCEEEEeCCHHHHHhhc--ccCCEEEEe-CCCCCCCCCCCH
Confidence 444454444333 45553 577766432 3668899999988532 33334 345555441 111123333333
Q ss_pred cccHHHHHHHHhcCCeEEE
Q 018280 268 IGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 268 iGT~~lA~~Ak~~~iPvyV 286 (358)
-.=..++-.|+.||+++++
T Consensus 145 ~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 145 ETLLALAARLRARGGWLVV 163 (330)
T ss_pred HHHHHHHHHhHhcCCEEEE
Confidence 3333466778889998876
No 87
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.45 E-value=1.1e+02 Score=30.96 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccc
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIG 269 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiG 269 (358)
...-+.+.++|.. |.+.+..+...=.+. ..+|.+.|+. ++........+ +++|.|+.++..- .+
T Consensus 18 ~~~A~~l~~~G~~--V~~~d~~~~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~--~~~d~vv~~~g~~-~~-------- 81 (450)
T PRK14106 18 LALAKFLKKLGAK--VILTDEKEEDQLKEA-LEELGELGIE--LVLGEYPEEFL--EGVDLVVVSPGVP-LD-------- 81 (450)
T ss_pred HHHHHHHHHCCCE--EEEEeCCchHHHHHH-HHHHHhcCCE--EEeCCcchhHh--hcCCEEEECCCCC-CC--------
Confidence 3444666677764 555555432111111 3467777876 33222222345 7799998876432 22
Q ss_pred cHHHHHHHHhcCCeEEE
Q 018280 270 TYSLALCAKFHNILFYV 286 (358)
Q Consensus 270 T~~lA~~Ak~~~iPvyV 286 (358)
.+....|+++|+|++-
T Consensus 82 -~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 82 -SPPVVQAHKKGIEVIG 97 (450)
T ss_pred -CHHHHHHHHCCCcEEe
Confidence 2355556666666543
No 88
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=47.23 E-value=2.7e+02 Score=26.72 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC-ccccCC
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL-TSIDLT 296 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~-~k~~~~ 296 (358)
.+.|.||...|.+.+ | ..+.-.|+.+++||+.+... -|+||.
T Consensus 120 ~~~D~VIdaiD~~~~------k---~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 120 AGFSYVIDAIDSVRP------K---AALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred CCCCEEEEcCCCHHH------H---HHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 468888877775532 2 24667889999999987655 466664
No 89
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=46.26 E-value=20 Score=29.90 Aligned_cols=106 Identities=22% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE-----cchHHHHhhhcCC
Q 018280 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-----ADSAAAALMKDGR 247 (358)
Q Consensus 173 LT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI-----~Dsa~~~~m~~~~ 247 (358)
+..+-||+.++ +. +..+++.+.+.|..++|+++++ +.++...+. ..+-++..- .+......-..+.
T Consensus 3 i~l~vtGs~~~--~~-~~~~l~~L~~~g~~v~vv~S~~-----A~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF02441_consen 3 ILLGVTGSIAA--YK-APDLLRRLKRAGWEVRVVLSPS-----AERFVTPEG-LTGEPVYTDWDTWDRGDPAEHIELSRW 73 (129)
T ss_dssp EEEEE-SSGGG--GG-HHHHHHHHHTTTSEEEEEESHH-----HHHHSHHHG-HCCSCEECTHCTCSTTTTTCHHHHHHT
T ss_pred EEEEEECHHHH--HH-HHHHHHHHhhCCCEEEEEECCc-----HHHHhhhhc-cccchhhhccccCCCCCCcCccccccc
Q ss_pred cCEEEEcceeeecCCceecccccHHHHHHHHhc---CCeEEEe
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFH---NILFYVA 287 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~---~iPvyV~ 287 (358)
.|.+++.--..-.=+.++|-+.--.+..++... ++|++++
T Consensus 74 ~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~ 116 (129)
T PF02441_consen 74 ADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIA 116 (129)
T ss_dssp ESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEE
T ss_pred CCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEE
No 90
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=46.17 E-value=3.4e+02 Score=27.60 Aligned_cols=95 Identities=8% Similarity=0.009 Sum_probs=54.7
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---hHHHHhhhc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKD 245 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---sa~~~~m~~ 245 (358)
|.++...+.. ..+.++.+.+.+-|-...++++.+.+..--.++ ...+.+.+.++.++.+ ..+...+++
T Consensus 300 gkrv~v~g~~--------~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~d~~e~~~~l~~ 370 (429)
T cd03466 300 GRKAAIYGEP--------DFVVAITRFVLENGMVPVLIATGSESKKLKEKL-EEDLKEYVEKCVILDGADFFDIESYAKE 370 (429)
T ss_pred CCEEEEEcCH--------HHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHH-HHHHHhcCCceEEEeCCCHHHHHHHHHh
Confidence 5566665532 345555566667787765666665444322223 2234555666665554 445556666
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
.++|.+|=+ ..-..+|++.|||++.+.
T Consensus 371 ~~~dliiG~----------------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGN----------------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEEC----------------chhHHHHHHcCCCEEEec
Confidence 667765322 223478999999998664
No 91
>PRK13566 anthranilate synthase; Provisional
Probab=46.15 E-value=86 Score=34.41 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=51.6
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (358)
|+..+|.+.+-...+-+ ..+..|.+.|++|+++........+...++|.||+.- ..|+ .+..+...+--.|..
T Consensus 524 ~~g~~IlvID~~dsf~~--~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsg----Gpgs-p~d~~~~~lI~~a~~ 596 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVH--TLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSP----GPGR-PSDFDCKATIDAALA 596 (720)
T ss_pred CCCCEEEEEECCCchHH--HHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECC----CCCC-hhhCCcHHHHHHHHH
Confidence 34557777776654433 3477899999999999876544444445788877620 1121 233455555555667
Q ss_pred cCCeEEEec
Q 018280 280 HNILFYVAA 288 (358)
Q Consensus 280 ~~iPvyV~a 288 (358)
.++|++=+|
T Consensus 597 ~~iPILGIC 605 (720)
T PRK13566 597 RNLPIFGVC 605 (720)
T ss_pred CCCcEEEEe
Confidence 899999666
No 92
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.91 E-value=97 Score=29.63 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=52.3
Q ss_pred ccHH-HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cc-hHHHHhhhcCCcCEEEEcceeeecCC
Q 018280 187 GTAL-GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 187 ~ta~-~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~i~~nG 262 (358)
|.+- .+++.+.++|.. |.+.- |.. .+ +..+...|+++... .| ..+...+ ..+|.|+--+.....+.
T Consensus 10 G~iG~~lv~~Ll~~g~~--V~~l~-R~~---~~--~~~l~~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi~~~~~~~~~~ 79 (317)
T CHL00194 10 GTLGRQIVRQALDEGYQ--VRCLV-RNL---RK--ASFLKEWGAELVYGDLSLPETLPPSF--KGVTAIIDASTSRPSDL 79 (317)
T ss_pred cHHHHHHHHHHHHCCCe--EEEEE-cCh---HH--hhhHhhcCCEEEECCCCCHHHHHHHH--CCCCEEEECCCCCCCCc
Confidence 4443 355677777754 54442 321 11 22344556654431 22 3455667 68898886543222221
Q ss_pred c---eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 263 D---TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 263 ~---v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
. -+|..|+..+.-+|++.|+.-+|...+
T Consensus 80 ~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 80 YNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred cchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 1 246678899999999999876665443
No 93
>PLN02735 carbamoyl-phosphate synthase
Probab=45.81 E-value=96 Score=35.77 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=45.2
Q ss_pred HHHHHHhCCCCeEEEc---c--hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPATLIA---D--SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~---D--sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
|++.|.+.||+|+.+. + ..+--+++++++|+||-- ++|.-.-..-.|.+=..|=.+|||++--
T Consensus 1007 Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~~t~ 1074 (1102)
T PLN02735 1007 TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVIT-----SSGDALDQKDGRQLRRMALAYKVPIITT 1074 (1102)
T ss_pred HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEEEEEC-----CCCccccccccHHHHHHHHHcCCCEEec
Confidence 6778999999988763 2 235556778999999854 3443321335688999999999999854
No 94
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=45.17 E-value=2.4e+02 Score=28.60 Aligned_cols=106 Identities=18% Similarity=0.100 Sum_probs=58.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHH-CCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHH-----
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHS-EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA----- 241 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~-~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~----- 241 (358)
+...|.|-|-+.+- -.++.-...++. +++.-++|++... .+.-.-+++.|...|.+|||++-..-|.
T Consensus 61 ~~eIiFTSG~TEsn-----NlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~ 133 (386)
T COG1104 61 PEEIIFTSGATESN-----NLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQ 133 (386)
T ss_pred CCeEEEecCCcHHH-----HHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHH
Confidence 34788887644211 112211113332 2345566655432 2233335667878899999998553221
Q ss_pred hhhcCCcCEEEEcceeeecCCceecccccHH----HHHHHHhcCCeEEE
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYS----LALCAKFHNILFYV 286 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~----lA~~Ak~~~iPvyV 286 (358)
+.+.=+-|-++|. | ..+=|-+||.+ ++-+||+++++|.|
T Consensus 134 L~~al~~~T~LVS---i---m~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 134 LEEALRPDTILVS---I---MHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred HHHhcCCCceEEE---E---EecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 1111123334332 2 24557888865 78899999999998
No 95
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=44.62 E-value=1.2e+02 Score=30.46 Aligned_cols=106 Identities=16% Similarity=0.068 Sum_probs=59.3
Q ss_pred ccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE-cchHHHHhhhc--CCcCEEEEcc---ee
Q 018280 185 GYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-ADSAAAALMKD--GRVSAVIVGA---DR 257 (358)
Q Consensus 185 g~~ta-~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI-~Dsa~~~~m~~--~~vd~VivGA---d~ 257 (358)
|.|-+ ..+++.+.+++...++.+.+-.|...-- -+.+.....-.++++ .|---...+.+ ..+..|...| +.
T Consensus 12 G~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~--~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~~Vvh~aa~~~~~ 89 (361)
T KOG1430|consen 12 GSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL--PAELTGFRSGRVTVILGDLLDANSISNAFQGAVVVHCAASPVPD 89 (361)
T ss_pred CccHHHHHHHHHHHhcccccEEEEeccCcccccc--chhhhcccCCceeEEecchhhhhhhhhhccCceEEEeccccCcc
Confidence 44543 5577888887778899999988874211 111111133445555 23222222211 2232222222 12
Q ss_pred eecCC----ceecccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 258 VAANG----DTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 258 i~~nG----~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
+..|. .-+|--||..+=-.|+..|||++|-+.+.-
T Consensus 90 ~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~ 128 (361)
T KOG1430|consen 90 FVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAY 128 (361)
T ss_pred ccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCce
Confidence 22210 237889999999999999999999665554
No 96
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=44.30 E-value=1e+02 Score=35.42 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCeEEEcc-----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~D-----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
||..|.+.||+|+.+.- ..+--+++++++|.|+--. .|.-. .--.|.+=-+|=.+|||++--
T Consensus 972 t~~~l~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~-----~~~~~-~~~~~~irr~a~~~~ip~~t~ 1038 (1068)
T PRK12815 972 TANWLAEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTS-----LSDSA-SEDAIKIRDEALSTHIPVFTE 1038 (1068)
T ss_pred HHHHHHhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECC-----CCccc-ccccHHHHHHHHHcCCCEEec
Confidence 67789999999887532 2244667789999998732 23222 234578888999999999843
No 97
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=44.10 E-value=3.6e+02 Score=27.32 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHCC-CeeEEEEe-cCCCCCcchHHHHHHHHhCCCCe--E---EEcch----HHHHhhhcCCcCEEEEcc
Q 018280 187 GTALGVIRALHSEG-VLERAYCS-ETRPFNQGSRLTAFELVHDRIPA--T---LIADS----AAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 187 ~ta~~~l~~a~~~g-~~~~V~v~-EsrP~~qG~rlta~eL~~~GI~v--t---lI~Ds----a~~~~m~~~~vd~VivGA 255 (358)
+.+..+.+.+.+.| -..-+..+ -..|..++... .+++.+.|++. . ++.|+ .+..++++.+.|.++.+.
T Consensus 303 ~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~pDl~i~~~ 381 (426)
T cd01972 303 AYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDS-EKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKRVKPDFIIFRH 381 (426)
T ss_pred ccHHHHHHHHHHcCCceEEEEEeccCchhhhcchh-HHHHhcCCcccccccceeeecCCCHHHHHHHHHHhCCCEEEEcC
Confidence 45666777777878 54443323 23334443222 24566667632 1 44555 566677788888776542
Q ss_pred eeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 256 DRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 256 d~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
-. +. ...|++.|+||+-.
T Consensus 382 ~~-------------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 382 GG-------------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred CC-------------cc-HHHHHhcCCCEEec
Confidence 11 11 12347799999865
No 98
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.01 E-value=1.1e+02 Score=27.75 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=38.7
Q ss_pred ccHHHHH-HHHHHCCCeeEEEE-ecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEEE-
Q 018280 187 GTALGVI-RALHSEGVLERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV- 253 (358)
Q Consensus 187 ~ta~~~l-~~a~~~g~~~~V~v-~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv- 253 (358)
|+.+..+ ....+++....|.+ .-.+|...+ .....+.|||+..+. |..+...++..++|.+++
T Consensus 12 gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~ 87 (200)
T PRK05647 12 GSNLQAIIDACAAGQLPAEIVAVISDRPDAYG----LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLA 87 (200)
T ss_pred ChhHHHHHHHHHcCCCCcEEEEEEecCccchH----HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhH
Confidence 5544444 44444443444433 233344333 223567899998866 334455566778998877
Q ss_pred cceeeec
Q 018280 254 GADRVAA 260 (358)
Q Consensus 254 GAd~i~~ 260 (358)
|-..++.
T Consensus 88 ~~~~ii~ 94 (200)
T PRK05647 88 GFMRILG 94 (200)
T ss_pred HhhhhCC
Confidence 4445543
No 99
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=43.42 E-value=1.7e+02 Score=27.79 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=54.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH--HHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR--LTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~r--lta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
-+++|.++..+ .....|+.|...|-..-|.+.+ +- +.|.. -||+-|+ ..+++..
T Consensus 57 Vtvvs~Gp~~a-------~~~~~lr~aLAmGaD~avli~d-~~-~~g~D~~~tA~~La---------------~ai~~~~ 112 (256)
T PRK03359 57 VTALSVGGKAL-------TNAKGRKDVLSRGPDELIVVID-DQ-FEQALPQQTASALA---------------AAAQKAG 112 (256)
T ss_pred EEEEEECCcch-------hhHHHHHHHHHcCCCEEEEEec-Cc-ccCcCHHHHHHHHH---------------HHHHHhC
Confidence 67888876411 1235789998889776665543 32 22322 2455443 3444456
Q ss_pred cCEEEEcceeeecCCceecccccHHH-HHHHHhcCCeEEEecc
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAP 289 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~l-A~~Ak~~~iPvyV~a~ 289 (358)
+|+||.|-.++ || +|.++ +++|...|+|++-.+.
T Consensus 113 ~DLVl~G~~s~--D~------~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 113 FDLILCGDGSS--DL------YAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCEEEEcCccc--cC------CCCcHHHHHHHHhCCCceeeEE
Confidence 99999997665 44 23334 6899999999885443
No 100
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=43.33 E-value=53 Score=31.74 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHCCC-eeEEEEecC-CCCCcchHHHHHHHHhCCCCeEEEc---------chHHHHhhhcCCcCEEEEc
Q 018280 186 YGTALGVIRALHSEGV-LERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 186 ~~ta~~~l~~a~~~g~-~~~V~v~Es-rP~~qG~rlta~eL~~~GI~vtlI~---------Dsa~~~~m~~~~vd~VivG 254 (358)
.|+-+..|..+.+.|. ..+|.++=| +|..++ ...+.|||+.+++ |..+...++..++|.+++.
T Consensus 99 ~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~------lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 99 FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEP------LAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLA 172 (286)
T ss_pred CcccHHHHHHHHHcCCCCcEEEEEEECCccHHH------HHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEe
Confidence 4666666666666665 355544433 664322 1457799999873 2234455666789988765
No 101
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=42.49 E-value=29 Score=29.43 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=47.9
Q ss_pred cccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCC-CCeEEEcchHHH-------HhhhcCCcCEEEE
Q 018280 182 ATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSAAA-------ALMKDGRVSAVIV 253 (358)
Q Consensus 182 at~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~G-I~vtlI~Dsa~~-------~~m~~~~vd~Viv 253 (358)
+|.|+.+++.++.-|++.|-+--++|-..|+.. -.+.+ ++-.++.|+-.- --| .+=|.++
T Consensus 2 ~tlaSHSALqIl~GAk~EGFrT~~ic~~~r~~~---------Y~~f~~iDe~i~~d~f~di~~~~~q~~L--~~~N~I~- 69 (124)
T PF06849_consen 2 ATLASHSALQILDGAKDEGFRTIAICQKGREKF---------YRRFPFIDEVIVLDSFSDILSEEVQEKL--REMNAIF- 69 (124)
T ss_dssp EEESSTTHHHHHHHHHHTT--EEEEEETTCHHH---------HHTTTT-SEEEEESSCGHCCSHHHHHHH--HHTTEEE-
T ss_pred eeeechHHHHHhhhHHHcCCcEEEEECCCCcch---------hhhcCcCcEEEEeCCHHHHHhHHHHHHH--HHCCeEE-
Confidence 566778999999999999988777777665321 22333 444555553322 112 2345553
Q ss_pred cceeeecCCceecccccHHHHHHHHhcCCeEEE
Q 018280 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 254 GAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
.+||+.+.-+|.-. +-+.+.||++=
T Consensus 70 -----VPhgSfv~Y~G~d~---ie~~~~vP~FG 94 (124)
T PF06849_consen 70 -----VPHGSFVAYVGYDR---IENEFKVPIFG 94 (124)
T ss_dssp -------BTTHHHHH-HHH---HHHT-SS-EES
T ss_pred -----ecCCCeeEeecHHH---HhhcCCCCeec
Confidence 47888888777654 34557888863
No 102
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.16 E-value=2.9e+02 Score=28.23 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcch----HHHHhhhcCCcCEEEEcceeee-cCCce
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS----AAAALMKDGRVSAVIVGADRVA-ANGDT 264 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~Ds----a~~~~m~~~~vd~VivGAd~i~-~nG~v 264 (358)
..|..+.+.|. +|++..+ .+.|.. +..+.|.+.|+.++++.|- .+-..+ +++...|+ .+.+. ..|.+
T Consensus 99 ~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai-~~~tklV~--ie~~sNp~G~v 171 (436)
T PRK07812 99 FAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAV-RPNTKAFF--AETISNPQIDV 171 (436)
T ss_pred HHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhC-CCCCeEEE--EECCCCCCCee
Confidence 34554444453 5666653 333432 2233466789999888531 122223 13333333 22222 12333
Q ss_pred ecccccHHHHHHHHhcCCeEEEec
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
.. + -.++-+||+||++++|=+
T Consensus 172 ~D-l--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 172 LD-I--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred cC-H--HHHHHHHHHcCCEEEEEC
Confidence 22 1 347889999999988743
No 103
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=42.12 E-value=1.8e+02 Score=23.18 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=37.3
Q ss_pred HHHhCCCCeEEEcch----HHHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIPATLIADS----AAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~vtlI~Ds----a~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|+++..+.+. ++..+.+..++|.+++|+++= |..-. -.|+-.--++-+.-++|+.|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 57 LAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 355678887665543 233344567899999999853 22222 345444444433348999886
No 104
>PRK07582 cystathionine gamma-lyase; Validated
Probab=41.71 E-value=1.2e+02 Score=30.06 Aligned_cols=72 Identities=17% Similarity=0.034 Sum_probs=42.9
Q ss_pred eEEEEecCCCCCcchHHHHH-HHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceeccccc----HHHHHH
Q 018280 203 ERAYCSETRPFNQGSRLTAF-ELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGT----YSLALC 276 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~-eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT----~~lA~~ 276 (358)
-+|++.+ |...+.+..++ .|...|+++.++....-. ..+ ++.++|++- . .-|..|. -.++-+
T Consensus 90 d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~--~~t~lV~le--~------p~NPtg~v~di~~I~~~ 157 (366)
T PRK07582 90 DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAAL--AGADLVLAE--T------PSNPGLDVCDLAALAAA 157 (366)
T ss_pred CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhc--cCceEEEEE--C------CCCCCCCccCHHHHHHH
Confidence 4666653 55545433333 356789999988744222 333 566666653 1 2344443 467778
Q ss_pred HHhcCCeEEE
Q 018280 277 AKFHNILFYV 286 (358)
Q Consensus 277 Ak~~~iPvyV 286 (358)
||.+|++++|
T Consensus 158 a~~~g~~lvV 167 (366)
T PRK07582 158 AHAAGALLVV 167 (366)
T ss_pred HHHcCCEEEE
Confidence 8999998876
No 105
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=41.37 E-value=21 Score=27.40 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
.++--++ +..|+. |.-.|++||++|||.++-++
T Consensus 29 ~~~~Giv------~~~Gg~-----~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGIV------TEEGGP-----TSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEEE------ESSSST-----TSHHHHHHHHTT-EEEESTT
T ss_pred hheEEEE------EEcCCc-----cchHHHHHHHcCCCEEEeec
Confidence 6666664 345543 24579999999999999876
No 106
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=40.92 E-value=1.9e+02 Score=29.48 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHH-HHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGV-IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~-l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
+++.++++.-+-+...+ +.+|++||-+- +.++.+ |..+.+.|-+ ++=-||.+-=.. ..-.-.
T Consensus 108 AR~AVAeYl~~~l~~kl-~a~DV~ltsGC---------~qAIe~~i~~LA~p~aN----ILlPrPGfp~Y~---~~a~~~ 170 (447)
T KOG0259|consen 108 ARRAVAEYLNRDLPNKL-TADDVVLTSGC---------SQAIELAISSLANPGAN----ILLPRPGFPLYD---TRAIYS 170 (447)
T ss_pred HHHHHHHHhhcCCCCcc-CcCceEEeccc---------hHHHHHHHHHhcCCCCc----eecCCCCCchHH---Hhhhhc
Confidence 45555555333232111 15689999653 345554 4444444443 444688763211 112345
Q ss_pred CCCeEEE---c-------chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEE
Q 018280 228 RIPATLI---A-------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 228 GI~vtlI---~-------Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
|+.|.+. | -..+-++.-...+-.||+--. -++|.|+.+-=--.+|-.||.+|+|++.
T Consensus 171 ~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~--NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 171 GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPN--NPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCC--CCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 7776653 2 344555554444445544432 2468888888888899999999999874
No 107
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=40.74 E-value=25 Score=33.57 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=22.0
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
+++|.+++..|....+. ...+...+.++++|+|...+
T Consensus 183 ~~~da~~~~~~~~~~~~-------~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 183 EKVDALYLLPDNLVDSN-------FEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp TT-SEEEE-S-HHHHHT-------HHHHHHHCCCTT--EEESSH
T ss_pred ccCCEEEEECCcchHhH-------HHHHHHHHHhcCCCEEECCH
Confidence 78899998876654322 22266788999999998654
No 108
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=40.66 E-value=1.6e+02 Score=28.09 Aligned_cols=88 Identities=27% Similarity=0.278 Sum_probs=57.7
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHHhCCCCeEEEcchHHHHhhhcCCc
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIADSAAAALMKDGRV 248 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~eL~~~GI~vtlI~Dsa~~~~m~~~~v 248 (358)
-+++|.++. -+...|+.|...|-. +.|..+.|-+.+-..+ ||+ +++..+++.+.
T Consensus 58 V~vlt~Gp~---------~a~~~lr~aLAmGaD-raili~d~~~~~~d~~~ta~---------------~Laa~~~~~~~ 112 (260)
T COG2086 58 VTVLTMGPP---------QAEEALREALAMGAD-RAILITDRAFAGADPLATAK---------------ALAAAVKKIGP 112 (260)
T ss_pred EEEEEecch---------hhHHHHHHHHhcCCC-eEEEEecccccCccHHHHHH---------------HHHHHHHhcCC
Confidence 678888764 567889999888865 4444444443332222 233 34456667788
Q ss_pred CEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 249 d~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
|+||.|-.++ ||+ .|-+| +++|...|.|.+--+.
T Consensus 113 ~LVl~G~qa~--D~~-t~qvg----~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 113 DLVLTGKQAI--DGD-TGQVG----PLLAELLGWPQVTYVS 146 (260)
T ss_pred CEEEEecccc--cCC-ccchH----HHHHHHhCCceeeeEE
Confidence 8999998887 552 23333 4789999999986543
No 109
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=40.63 E-value=39 Score=26.68 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=27.8
Q ss_pred hhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 243 m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.++.++|+|++|+..--. .--..-+...--++++..+||+|+
T Consensus 98 ~~~~~~dliv~G~~~~~~---~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 98 AEEHNADLIVMGSRGRSG---LERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHTTCSEEEEESSSTTS---TTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cccccceeEEEeccCCCC---ccCCCcCCHHHHHHHcCCCCEEEe
Confidence 346899999999987322 222233344445677888999986
No 110
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=40.55 E-value=1e+02 Score=28.51 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=48.3
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCC-cchHH-------------HHHHHHhCCCCeEEEc--chHHHHhhhcCCcCEEEEc
Q 018280 191 GVIRALHSEGVLERAYCSETRPFN-QGSRL-------------TAFELVHDRIPATLIA--DSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~-qG~rl-------------ta~eL~~~GI~vtlI~--Dsa~~~~m~~~~vd~VivG 254 (358)
|+=..|+++|-+.+|++....|.+ +|.|- +..++.+.|||+.+-+ -+.+...++++.+=.|++.
T Consensus 58 GLAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~~~~~~l~~~l~~G~~~lvLIS 137 (207)
T PF11814_consen 58 GLALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRPLSLADLRAALAAGAIVLVLIS 137 (207)
T ss_pred HHHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCCCCHHHHHHHHHCCCEEEEEEe
Confidence 333567788999999999888864 33221 2456778999999854 4677778888888888875
Q ss_pred ceee
Q 018280 255 ADRV 258 (358)
Q Consensus 255 Ad~i 258 (358)
.-++
T Consensus 138 ~y~~ 141 (207)
T PF11814_consen 138 TYRM 141 (207)
T ss_pred eccc
Confidence 5444
No 111
>PLN02476 O-methyltransferase
Probab=40.44 E-value=2.1e+02 Score=27.57 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=49.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCC--eEEEcchHHHHh---
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP--ATLIADSAAAAL--- 242 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~--vtlI~Dsa~~~~--- 242 (358)
...+||=.+-+ .|||++. .|...+..-+|+..|..|... +++...+.+.|+. ++++...+.-.+
T Consensus 118 ~ak~VLEIGT~-----tGySal~----lA~al~~~G~V~TiE~d~e~~--~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 118 GAERCIEVGVY-----TGYSSLA----VALVLPESGCLVACERDSNSL--EVAKRYYELAGVSHKVNVKHGLAAESLKSM 186 (278)
T ss_pred CCCeEEEecCC-----CCHHHHH----HHHhCCCCCEEEEEECCHHHH--HHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 35678876532 3677652 122112233699999998653 4434457788885 888887766543
Q ss_pred hh---cCCcCEEEEccee
Q 018280 243 MK---DGRVSAVIVGADR 257 (358)
Q Consensus 243 m~---~~~vd~VivGAd~ 257 (358)
.+ .+..|+|++.|+-
T Consensus 187 ~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 187 IQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HhcccCCCCCEEEECCCH
Confidence 11 2479999999874
No 112
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=40.27 E-value=44 Score=34.82 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeee
Q 018280 193 IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA 259 (358)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~ 259 (358)
...+++..+..+||++-+.+ +-|...+++.....-+.........+..+.++.++|.|++|.+.-+
T Consensus 16 ~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~l 81 (486)
T PRK05784 16 AEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEPL 81 (486)
T ss_pred HHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchHH
Confidence 34455544467899885533 4343222211111101111122234555666788999999987543
No 113
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=39.65 E-value=2.5e+02 Score=27.58 Aligned_cols=87 Identities=24% Similarity=0.200 Sum_probs=45.3
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcch---HHHHhhhcCCcCEEEEcceeeec-CCce
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAA-NGDT 264 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~i~~-nG~v 264 (358)
..++..+.+.|. +|++.. |.+.+.. +....+...|+++.++.-. .+...+. ++..+|++ +.+.. .|.+
T Consensus 69 ~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~-~~~~~v~~--e~~~np~g~~ 141 (369)
T cd00614 69 STVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIK-PETKLVYV--ESPTNPTLKV 141 (369)
T ss_pred HHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcC-CCCeEEEE--ECCCCCCCee
Confidence 334554444443 455543 4554432 2222355789998887532 2333331 34555554 23322 3333
Q ss_pred ecccccHHHHHHHHhcCCeEEE
Q 018280 265 ANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
.. + -.++-+||+||++++|
T Consensus 142 ~d-l--~~i~~la~~~g~~liv 160 (369)
T cd00614 142 VD-I--EAIAELAHEHGALLVV 160 (369)
T ss_pred cC-H--HHHHHHHHHcCCEEEE
Confidence 22 2 2577889999999887
No 114
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=39.07 E-value=3.2e+02 Score=26.94 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=62.5
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCC-----CCC----------cc
Q 018280 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETR-----PFN----------QG 216 (358)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~Esr-----P~~----------qG 216 (358)
.++..+.+.|. +.+|+..+ +|.| |. .+...+...|...-.+++... -.. +|
T Consensus 13 ~~G~~~Q~~L~------~~~VlIiG-~Ggl-----Gs--~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g 78 (338)
T PRK12475 13 GIGEEGQRKIR------EKHVLIVG-AGAL-----GA--ANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQK 78 (338)
T ss_pred hcCHHHHHhhc------CCcEEEEC-CCHH-----HH--HHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCC
Confidence 46778888887 45677765 3433 22 234555556753333333211 001 11
Q ss_pred ---hHHHHHHHHhC--CCCeEEEc----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 217 ---SRLTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 217 ---~rlta~eL~~~--GI~vtlI~----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+...++.|.+. ++.++.+. +..+..++ .++|.||.+.|.... -+.+.-+|+.+++|++.+
T Consensus 79 ~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~--~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 79 KPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV--KEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYG 147 (338)
T ss_pred ccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--cCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEE
Confidence 11223455554 45555443 23344566 789999999875532 245667899999999865
Q ss_pred c
Q 018280 288 A 288 (358)
Q Consensus 288 a 288 (358)
+
T Consensus 148 ~ 148 (338)
T PRK12475 148 G 148 (338)
T ss_pred E
Confidence 4
No 115
>PRK09191 two-component response regulator; Provisional
Probab=38.88 E-value=1.9e+02 Score=26.16 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=53.1
Q ss_pred ccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEE-EcchH-HHHhhhcCCcCEEEEcceeeecC
Q 018280 187 GTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSA-AAALMKDGRVSAVIVGADRVAAN 261 (358)
Q Consensus 187 ~ta~~~l~~a~~---~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtl-I~Dsa-~~~~m~~~~vd~VivGAd~i~~n 261 (358)
+||..-+..|.+ +....+|++++..|..... + ...|...|+.+.. ..+.. +-..+.+...|.|++..+ ..+
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~~-l-~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~ 194 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIAMD-L-EQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LAD 194 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHHH-H-HHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCC
Confidence 566555544443 2335567777776665331 2 4567788888773 44433 223344567899998764 222
Q ss_pred CceecccccHHHHHHHHhcCCeEEEecc
Q 018280 262 GDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
| .-|.-.+..+.+..++|++++++
T Consensus 195 ~----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 195 G----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred C----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 1 01222333344444899999865
No 116
>PRK12320 hypothetical protein; Provisional
Probab=38.83 E-value=63 Score=35.32 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=36.3
Q ss_pred chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 236 DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 236 Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|.....++ .++|.|+--|-....+..-.|-.||.+++-+|+++|+.++.+...
T Consensus 51 d~~l~~al--~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 51 NPVLQELA--GEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred CHHHHHHh--cCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44444556 678888877643221222378899999999999999997776543
No 117
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=38.60 E-value=4.4e+02 Score=27.15 Aligned_cols=89 Identities=7% Similarity=0.019 Sum_probs=47.7
Q ss_pred HHHHCCCeeEEEEecCC-C-CCcchHHHHHHHHhCCCCeEEEcc------hHHHHhhhcCCcCEEEEcceeeec-CCcee
Q 018280 195 ALHSEGVLERAYCSETR-P-FNQGSRLTAFELVHDRIPATLIAD------SAAAALMKDGRVSAVIVGADRVAA-NGDTA 265 (358)
Q Consensus 195 ~a~~~g~~~~V~v~Esr-P-~~qG~rlta~eL~~~GI~vtlI~D------sa~~~~m~~~~vd~VivGAd~i~~-nG~v~ 265 (358)
.+...|+ +|++.... + +....++ .+.+...|+.+..+.- ......+ +++...|++-...-+. +| .-
T Consensus 155 ~~l~~Gd--eVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN~~~~G-~~ 229 (454)
T TIGR00474 155 NTLAKGK--EVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSNYRIVG-FT 229 (454)
T ss_pred HHhCCcC--EEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCcccccC-CC
Confidence 4444443 67777543 3 2222344 4556778998887731 1222333 2344444433322221 23 11
Q ss_pred cccccHHHHHHHHhcCCeEEEec
Q 018280 266 NKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 266 nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
...---.++-+||+||+|++|=+
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 23345668889999999999954
No 118
>PLN02828 formyltetrahydrofolate deformylase
Probab=38.46 E-value=1.1e+02 Score=29.38 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=38.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEecCCC-CCcchHHHHHHHHhCCCCeEEEcc-------hHHHHhhhcCCcCEEEEc
Q 018280 185 GYGTALGVIRALHSEGV-LERAYCSETRP-FNQGSRLTAFELVHDRIPATLIAD-------SAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v~EsrP-~~qG~rlta~eL~~~GI~vtlI~D-------sa~~~~m~~~~vd~VivG 254 (358)
|.|+-+.-|..++++|. +..|.++=|.| ...++.+ .....+.|||+.+++. ..+...+ .++|.+++.
T Consensus 79 g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~-~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l--~~~DliVLA 154 (268)
T PLN02828 79 KQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHV-MRFLERHGIPYHYLPTTKENKREDEILELV--KGTDFLVLA 154 (268)
T ss_pred CCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchH-HHHHHHcCCCEEEeCCCCCCCHHHHHHHHH--hcCCEEEEe
Confidence 45777766666666664 34444443333 2122222 2234678999998763 2344566 469988876
No 119
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.10 E-value=1.2e+02 Score=28.16 Aligned_cols=52 Identities=25% Similarity=0.176 Sum_probs=36.6
Q ss_pred hHHHHhhhcCCc-CEEEEcceeeecCCc---------eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 237 SAAAALMKDGRV-SAVIVGADRVAANGD---------TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 237 sa~~~~m~~~~v-d~VivGAd~i~~nG~---------v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
......+ ..+ |.|+--|-.....+. -+|-.||..+.-+|+..+++-+|.+.+
T Consensus 55 ~~~~~~~--~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 55 DLVDELA--KGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred HHHHHHH--hcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 4555566 555 887776655544333 589999999999999988877776433
No 120
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=37.93 E-value=33 Score=30.30 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=26.8
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEec
Q 018280 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSE 209 (358)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~E 209 (358)
..+.++|.+. +.--||.||+.|+-=| |+|.+.+|.. +|-.+.-+..|
T Consensus 80 ~~aL~~ild~---~n~PvLiHC~~G~~rT---G~vvg~lRk~--Q~W~~~~i~~E 126 (164)
T PF03162_consen 80 AEALEIILDP---RNYPVLIHCNHGKDRT---GLVVGCLRKL--QGWSLSSIFDE 126 (164)
T ss_dssp HHHHHHHH-G---GG-SEEEE-SSSSSHH---HHHHHHHHHH--TTB-HHHHHHH
T ss_pred HHHHHHHhCC---CCCCEEEEeCCCCcch---hhHHHHHHHH--cCCCHHHHHHH
Confidence 3444555422 2356999999998655 7888889854 45444333333
No 121
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.62 E-value=56 Score=29.31 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=47.4
Q ss_pred cEEEEecCCCccccccccc---HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-c--hHHHHhh
Q 018280 170 FSVLTHCNTGSLATAGYGT---ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-D--SAAAALM 243 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~t---a~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-D--sa~~~~m 243 (358)
..|-.||-| -|- +..+++...++....+|+++=+-|. |.++ +..+...++.+.+.| | .++..++
T Consensus 22 ~~iWiHa~S-------vGE~~a~~~Li~~l~~~~p~~~illT~~T~t--g~~~-~~~~~~~~v~~~~~P~D~~~~~~rfl 91 (186)
T PF04413_consen 22 PLIWIHAAS-------VGEVNAARPLIKRLRKQRPDLRILLTTTTPT--GREM-ARKLLPDRVDVQYLPLDFPWAVRRFL 91 (186)
T ss_dssp T-EEEE-SS-------HHHHHHHHHHHHHHTT---TS-EEEEES-CC--HHHH-HHGG-GGG-SEEE---SSHHHHHHHH
T ss_pred CcEEEEECC-------HHHHHHHHHHHHHHHHhCCCCeEEEEecCCc--hHHH-HHHhCCCCeEEEEeCccCHHHHHHHH
Confidence 789999865 232 3345666666666788888876554 6554 444444588899888 3 3345556
Q ss_pred hcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 244 ~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
++-+.+.+|+-=--+-+| +-..|+..|||++.+-.
T Consensus 92 ~~~~P~~~i~~EtElWPn-----------ll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 92 DHWRPDLLIWVETELWPN-----------LLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHH--SEEEEES----HH-----------HHHH-----S-EEEEEE
T ss_pred HHhCCCEEEEEccccCHH-----------HHHHHhhcCCCEEEEee
Confidence 555566655433333344 67789999999998754
No 122
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=37.61 E-value=2.4e+02 Score=27.54 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018280 79 FSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAA------TASEANSVFQAYIEAAEIMLKDDVATNKA 152 (358)
Q Consensus 79 ~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~------~~~~~~~~~~~l~~~~~~~~~e~~~a~~~ 152 (358)
+...+.|-.+.|+.....+.-+.+..-++..++++.++..++... +..++.....+....+
T Consensus 93 P~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~------------- 159 (300)
T COG0031 93 PETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTG------------- 159 (300)
T ss_pred CCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhH-------------
Confidence 445577888888888888888777555688999888877665521 1111111111111111
Q ss_pred HHHHHHHHhHhhhcCCC--cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCC
Q 018280 153 IGSYGASFLQNQLKNSK--FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETR 211 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~--~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~Esr 211 (358)
-+...+. ++ |.++.-+-|| ||..++-+.++++...++++.+|..
T Consensus 160 -----~EI~~~~---~g~~d~fVagvGTG-------GTitGvar~Lk~~~p~i~iv~vdP~ 205 (300)
T COG0031 160 -----PEIWQQT---DGKVDAFVAGVGTG-------GTITGVARYLKERNPNVRIVAVDPE 205 (300)
T ss_pred -----HHHHHHh---CCCCCEEEEeCCcc-------hhHHHHHHHHHhhCCCcEEEEECCC
Confidence 1222211 22 4444333333 6788888888888888999998743
No 123
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=37.30 E-value=61 Score=27.37 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCe
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL 202 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~ 202 (358)
+||+++.+++||. ...++..++.|+++|-.
T Consensus 103 ~gDvli~iS~SG~-----s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 103 PGDVLIVISNSGN-----SPNVIEAAEEAKERGMK 132 (138)
T ss_dssp TT-EEEEEESSS------SHHHHHHHHHHHHTT-E
T ss_pred CCCEEEEECCCCC-----CHHHHHHHHHHHHCCCE
Confidence 7999999999863 23567888999887753
No 124
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=37.27 E-value=29 Score=28.88 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=30.4
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
...++.++|++++|.++ + ...+.| ....-+.++-++||+|+
T Consensus 97 ~~a~~~~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 97 DAIKKYDMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHHHhCCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEe
Confidence 33456799999999985 2 344578 45556788899999997
No 125
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=36.88 E-value=2.5e+02 Score=25.16 Aligned_cols=86 Identities=22% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc---chHHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA---DSAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~---Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
+++.+.+.+...++++ |+.. . . .+.+|.+.|+.+.... ..++...+ +.+|.|++--.... .. -.-
T Consensus 14 v~~~L~~~~~~V~~l~---R~~~-~-~-~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~d~v~~~~~~~~---~~-~~~ 81 (233)
T PF05368_consen 14 VVRALLSAGFSVRALV---RDPS-S-D-RAQQLQALGAEVVEADYDDPESLVAAL--KGVDAVFSVTPPSH---PS-ELE 81 (233)
T ss_dssp HHHHHHHTTGCEEEEE---SSSH-H-H-HHHHHHHTTTEEEES-TT-HHHHHHHH--TTCSEEEEESSCSC---CC-HHH
T ss_pred HHHHHHhCCCCcEEEE---eccc-h-h-hhhhhhcccceEeecccCCHHHHHHHH--cCCceEEeecCcch---hh-hhh
Confidence 4455555454444443 3331 1 2 2567888998765333 24555567 77777765432221 11 112
Q ss_pred ccHHHHHHHHhcCCeEEEecc
Q 018280 269 GTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 269 GT~~lA~~Ak~~~iPvyV~a~ 289 (358)
....++-+|++.||+.||...
T Consensus 82 ~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 82 QQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHHHHHHT-SEEEESE
T ss_pred hhhhHHHhhhccccceEEEEE
Confidence 335677889999999999643
No 126
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.47 E-value=95 Score=25.27 Aligned_cols=54 Identities=26% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|+++....|......+ .+=|.+|+ +...|.. .-+...+-.||++|+|+++++..
T Consensus 26 ~~~~~~~~~~~~~~~~--~~~dl~I~----iS~SG~t---~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 26 KIPVYVVKDYTLPAFV--DRKTLVIA----VSYSGNT---EETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCEEEecCccCcCCC--CCCCEEEE----EECCCCC---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 7788877775433334 44455543 3334422 23445667899999999998753
No 127
>PRK04425 Maf-like protein; Reviewed
Probab=36.24 E-value=2.3e+02 Score=25.85 Aligned_cols=78 Identities=24% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCCeeEEEEe---cCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeee-cCCceecccccHHHH
Q 018280 199 EGVLERAYCS---ETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v~---EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~-~nG~v~nkiGT~~lA 274 (358)
.|..|.|+.. |+.+..+..+-++.+|++..-. .+. +..-+.+++|||.|. -||.+..|=.+..-|
T Consensus 23 ~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~----------~v~-~~~~~~lvI~aDTvV~~~g~ilgKP~~~eeA 91 (196)
T PRK04425 23 LGIAFQAASPDFDETPMLGESAPQTALRLAEGKAR----------SLT-GRFPEALIVGADQVAWCDGRQWGKPMNLANA 91 (196)
T ss_pred CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH----------HHH-hhCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 4888887743 5443333333345555543221 111 123477999999986 499999999998776
Q ss_pred --HHHHhcCCeEEEe
Q 018280 275 --LCAKFHNILFYVA 287 (358)
Q Consensus 275 --~~Ak~~~iPvyV~ 287 (358)
++-+..|.+..|.
T Consensus 92 ~~~L~~lsg~~h~v~ 106 (196)
T PRK04425 92 QKMLMHLSGREIEFY 106 (196)
T ss_pred HHHHHHhCCCcEEEE
Confidence 4667777766554
No 128
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=35.98 E-value=3.5e+02 Score=25.65 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---hHHHHhhhcC---CcCEEEEcceeee-cCCce
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDG---RVSAVIVGADRVA-ANGDT 264 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---sa~~~~m~~~---~vd~VivGAd~i~-~nG~v 264 (358)
.++.+...|. +|++ ++|....... -+...|.++..+.. ..+-.++++. .-.++++ ...+. ..| +
T Consensus 77 ~~~~~~~~gd--~Vl~--~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~-~~~~~~~tG-~ 147 (349)
T cd06454 77 VLSTLAGKGD--LIIS--DSLNHASIID---GIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIV-TEGVYSMDG-D 147 (349)
T ss_pred HHHHhcCCCC--EEEE--ehhhhHHHHH---HHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEE-EeccccCCC-C
Confidence 3444433343 4554 3455543221 23456888776642 2333444321 1223333 22232 234 3
Q ss_pred ecccccHHHHHHHHhcCCeEEEe
Q 018280 265 ANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
...+ -.++-+|++||+++++=
T Consensus 148 ~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 148 IAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred ccCH--HHHHHHHHHcCCEEEEE
Confidence 3443 45678899999998873
No 129
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=35.86 E-value=2.3e+02 Score=28.48 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=39.3
Q ss_pred EcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 234 IADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 234 I~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+-.++.++|+.+++ .-|.+..=|+|..-+|+-.---++++|++|++|.
T Consensus 176 l~PPa~~~ll~~~~~-----~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVa 224 (369)
T TIGR00075 176 LVPPAVEALLENPAV-----QIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIA 224 (369)
T ss_pred ccHHHHHHHHcCCCC-----CccEEEecCEEEEEeccchhHHHHHHcCCCeEEe
Confidence 345677888855532 2367778899999999999999999999999986
No 130
>PRK14364 Maf-like protein; Provisional
Probab=35.81 E-value=1.3e+02 Score=27.01 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeee-cCCceecccccHHHH
Q 018280 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~-~nG~v~nkiGT~~lA 274 (358)
.|..|.|+. .|+-+..+.-.-.+..|+..+ +-.+.+ ..-+.+++|||.|+ -||.+..|=.+..-|
T Consensus 15 ~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~ilgKP~~~eeA 83 (181)
T PRK14364 15 LGLNFEIYSPDIDESVHEGELVHQYVERLAREK----------AQAVLN-IFPDSVIIAADTSLGLDGQIIGKPDSKQHA 83 (181)
T ss_pred CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 478888874 355433332222344454432 111221 23478999999976 499999999998776
Q ss_pred --HHHHhcCCeEEE
Q 018280 275 --LCAKFHNILFYV 286 (358)
Q Consensus 275 --~~Ak~~~iPvyV 286 (358)
++-+..|....|
T Consensus 84 ~~~L~~lsG~~h~V 97 (181)
T PRK14364 84 FDIWKQLSGRWHDV 97 (181)
T ss_pred HHHHHHhCCCCeEE
Confidence 466666665333
No 131
>PRK05443 polyphosphate kinase; Provisional
Probab=35.63 E-value=68 Score=35.02 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEE
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLI 234 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI 234 (358)
+.+...|..|.++|++.+|++.-..+..+-+. -.+++|.++|+.|.+-
T Consensus 380 s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~ 428 (691)
T PRK05443 380 SPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYG 428 (691)
T ss_pred HHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEc
Confidence 56677788888889998888776555544222 2366899999998663
No 132
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=35.40 E-value=3e+02 Score=23.91 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=24.1
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (358)
++.+++.|+++..|+++.-+.+- +.+|.++.-
T Consensus 121 ~~~ak~~Ga~vI~IT~~~~s~La--~~aD~~l~~ 152 (177)
T cd05006 121 LEAAKERGMKTIALTGRDGGKLL--ELADIEIHV 152 (177)
T ss_pred HHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEe
Confidence 56778899999999988766665 667776654
No 133
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=35.30 E-value=1.3e+02 Score=27.95 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEe
Q 018280 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCS 208 (358)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g-~~~~V~v~ 208 (358)
.++++|+ ||++|..-++. +++....+++...+++ ++++++-.
T Consensus 10 eAv~~I~-----DG~ti~~gGf~------~~~~P~ali~al~r~~~~dLtli~~ 52 (219)
T PRK09920 10 DATGFFR-----DGMTIMVGGFM------GIGTPSRLVEALLESGVRDLTLIAN 52 (219)
T ss_pred HHHhcCC-----CCCEEEECccc------CcCCHHHHHHHHHhcCCCceEEEEe
Confidence 4566788 99999886554 2356777788877777 57888863
No 134
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=35.22 E-value=1e+02 Score=29.65 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=41.1
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---------hHHHHhhhcCCcCEEEE
Q 018280 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIV 253 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---------sa~~~~m~~~~vd~Viv 253 (358)
|.|+-+.-|..+.+.|. +.+ +.|.=.+|..++ ...+.|||+.+++- ..+...|++.++|.+++
T Consensus 93 g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~------~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivl 166 (280)
T TIGR00655 93 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRS------LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVL 166 (280)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHH------HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEE
Confidence 44676766666666665 233 334455665543 14578999998764 34455677788998887
Q ss_pred c
Q 018280 254 G 254 (358)
Q Consensus 254 G 254 (358)
.
T Consensus 167 a 167 (280)
T TIGR00655 167 A 167 (280)
T ss_pred e
Confidence 6
No 135
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=35.16 E-value=3.1e+02 Score=26.55 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=60.1
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC------c--------ch-
Q 018280 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN------Q--------GS- 217 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~------q--------G~- 217 (358)
++..+.+.|. +.+||..+- |.| -..+++.+...|.. ++.+.+..+.. | |.
T Consensus 9 ~G~eaq~kL~------~s~VLIvG~-gGL-------G~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~ 73 (286)
T cd01491 9 LGHEAMKKLQ------KSNVLISGL-GGL-------GVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKN 73 (286)
T ss_pred cCHHHHHHHh------cCcEEEEcC-CHH-------HHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHH
Confidence 4556666776 456777653 322 23345555556764 33333333311 0 21
Q ss_pred --HHHHHHHHhCC--CCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 218 --RLTAFELVHDR--IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 218 --rlta~eL~~~G--I~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
..++..|++.+ ++++.....--...+ .+.|.||...|.+.. -..+.-+|+.++|||+.+.
T Consensus 74 Kaea~~~~L~eLNp~V~V~~~~~~~~~~~l--~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 74 RAEASQARLAELNPYVPVTVSTGPLTTDEL--LKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHH--hcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 12344566554 666666654333455 688988777553311 1234457899999999865
No 136
>PRK05939 hypothetical protein; Provisional
Probab=35.10 E-value=1.8e+02 Score=29.19 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
.++....+.|. +|++.+ |.+-+.......+...|++++++.- ..+...+ +++..+|++ + ..-|.
T Consensus 77 ~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l-~~~tklV~v-------e-sp~Np 143 (397)
T PRK05939 77 AVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAI-RPNTRMVFV-------E-TIANP 143 (397)
T ss_pred HHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhC-CCCCeEEEE-------E-CCCCC
Confidence 34444444453 566654 4432321112346778999888752 2233334 244555544 1 34455
Q ss_pred cccH----HHHHHHHhcCCeEEE
Q 018280 268 IGTY----SLALCAKFHNILFYV 286 (358)
Q Consensus 268 iGT~----~lA~~Ak~~~iPvyV 286 (358)
.|.. .++-+||+||++++|
T Consensus 144 tG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 144 GTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred CCCHHhHHHHHHHHHHcCCEEEE
Confidence 5543 466788999998887
No 137
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=34.83 E-value=3.8e+02 Score=26.96 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHHhCCCCeEEEcch---HHHHhhhcCCcCEEEEcceeee-cCCcee
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVA-ANGDTA 265 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~eL~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~i~-~nG~v~ 265 (358)
.++......| -+|++... .+.+. .++...+...|++++++... .+...++ ++...|++ +... ..|.+.
T Consensus 100 ~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~-~~tklV~~--esp~Nptg~v~ 172 (403)
T PRK07810 100 TALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALS-VPTQAVFF--ETPSNPMQSLV 172 (403)
T ss_pred HHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcC-cCceEEEE--ECCCCCCCeec
Confidence 3444444434 36666653 22222 33344467789999988632 2333332 34444443 1111 233333
Q ss_pred cccccHHHHHHHHhcCCeEEE
Q 018280 266 NKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 266 nkiGT~~lA~~Ak~~~iPvyV 286 (358)
. --.++-+||+||++++|
T Consensus 173 d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 173 D---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred C---HHHHHHHHHHcCCEEEE
Confidence 2 33577789999999887
No 138
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=34.75 E-value=1.4e+02 Score=31.90 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-----CCC----CeEEE-cc-
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-----DRI----PATLI-AD- 236 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~-----~GI----~vtlI-~D- 236 (358)
+|.+||..+-+|.+ | ..+.+.+.++|. +|++.- |......++ +.++.+ .|- .+.++ .|
T Consensus 79 ~gKvVLVTGATGgI-----G--~aLAr~LLk~G~--~Vval~-Rn~ekl~~l-~~~l~~~~L~~~Ga~~~~~v~iV~gDL 147 (576)
T PLN03209 79 DEDLAFVAGATGKV-----G--SRTVRELLKLGF--RVRAGV-RSAQRAESL-VQSVKQMKLDVEGTQPVEKLEIVECDL 147 (576)
T ss_pred CCCEEEEECCCCHH-----H--HHHHHHHHHCCC--eEEEEe-CCHHHHHHH-HHHhhhhccccccccccCceEEEEecC
Confidence 56788887765532 2 345566666664 555543 322222222 223322 121 12222 12
Q ss_pred ---hHHHHhhhcCCcCEEEEcceeeecC-----C-ceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 237 ---SAAAALMKDGRVSAVIVGADRVAAN-----G-DTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 237 ---sa~~~~m~~~~vd~VivGAd~i~~n-----G-~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
..+...+ +++|.||..|-....+ + .-+|-.|+..+.-+|+.+|+.-+|...+
T Consensus 148 tD~esI~~aL--ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 148 EKPDQIGPAL--GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred CCHHHHHHHh--cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 2344456 7889887654221100 0 1146678988888888888765554443
No 139
>PRK12342 hypothetical protein; Provisional
Probab=34.72 E-value=3e+02 Score=26.13 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=55.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH--HHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR--LTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~r--lta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
-+++|+++.. .....+++.|...|-.--|.+.+ | -+.|.. -||+-|+ ..+++..
T Consensus 54 Vtvls~Gp~~-------a~~~~l~r~alamGaD~avli~d-~-~~~g~D~~ata~~La---------------~~i~~~~ 109 (254)
T PRK12342 54 IAALTVGGSL-------LQNSKVRKDVLSRGPHSLYLVQD-A-QLEHALPLDTAKALA---------------AAIEKIG 109 (254)
T ss_pred EEEEEeCCCh-------HhHHHHHHHHHHcCCCEEEEEec-C-ccCCCCHHHHHHHHH---------------HHHHHhC
Confidence 6678887741 01223458788888776665553 3 223332 2455343 3454456
Q ss_pred cCEEEEcceeeecCCceecccccHHH-HHHHHhcCCeEEEeccCccc
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~l-A~~Ak~~~iPvyV~a~~~k~ 293 (358)
+|+|+.|-.++ ||+ |.++ +++|...|+|++-.+...++
T Consensus 110 ~DLVl~G~~s~--D~~------tgqvg~~lA~~Lg~P~vt~v~~~~~ 148 (254)
T PRK12342 110 FDLLLFGEGSG--DLY------AQQVGLLLGELLQLPVINAVSKIQR 148 (254)
T ss_pred CCEEEEcCCcc--cCC------CCCHHHHHHHHhCCCcEeeEEEEEE
Confidence 99999997665 442 2233 68999999999865544443
No 140
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=34.37 E-value=85 Score=29.82 Aligned_cols=30 Identities=10% Similarity=-0.119 Sum_probs=23.9
Q ss_pred eecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 264 TANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
-+|-.||..++-+|+.+|++|+.+...+-|
T Consensus 79 ~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 79 LLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 378899999999999999987766554444
No 141
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=34.27 E-value=99 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=20.6
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccC
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.|-.||..++-+|+.+++.|+.+...
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~ 101 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTD 101 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 46678999999999988888776544
No 142
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=34.23 E-value=50 Score=32.93 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCC-cchHH-HHHHHHhCCCCeEEEc
Q 018280 185 GYGTALGVIRALHSEGVLERAYCSETRPFN-QGSRL-TAFELVHDRIPATLIA 235 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~-qG~rl-ta~eL~~~GI~vtlI~ 235 (358)
+-|.+...|..|.++||+..|+| |=+-.+ |...+ -|++|.++|+.|.|-.
T Consensus 48 ~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 48 SNSPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CCCHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 34677778888888999988875 444333 22222 2568999999888743
No 143
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.12 E-value=3.7e+02 Score=24.59 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHhCC--CCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 220 TAFELVHDR--IPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 220 ta~eL~~~G--I~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
.++.|.+.+ ++++.+.. .....++ .++|.||...|.... -..+.-.|+.+++|++.+.
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~--~~~DvVi~~~d~~~~---------r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDAENAEELI--AGYDLVLDCTDNFAT---------RYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCHHHHHHHH--hCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 345566544 45554432 2334566 789999988776521 2467788999999998764
No 144
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=34.03 E-value=2.1e+02 Score=26.65 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcch---HHHHHHHHhCCCCeE-EEcchHHHHhhhcCCcCEEEEcceeeecCC
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGS---RLTAFELVHDRIPAT-LIADSAAAALMKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~---rlta~eL~~~GI~vt-lI~Dsa~~~~m~~~~vd~VivGAd~i~~nG 262 (358)
.....+|..+.+.....+++|-+ -|...+. ++ ..++.. ...+. +..+.....+| .++|.|+.- |
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~Ll--~~s~~Vvti------n- 207 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSY-LEELPN-LPNVVIIDDDVNLYELL--EQSDAVVTI------N- 207 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhH-hhhhhc-CCCeEEECCCCCHHHHH--HhCCEEEEE------C-
Confidence 45677888777666567776655 5632221 22 112222 34444 44566778889 889988642 3
Q ss_pred ceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 263 DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.++++=|-.+|+||+++...+
T Consensus 208 --------StvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 208 --------STVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred --------CHHHHHHHHcCCceEEecCcc
Confidence 247788899999999987553
No 145
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=33.88 E-value=2.8e+02 Score=27.94 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=39.3
Q ss_pred cchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 235 ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 235 ~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+-.++.++++.+.. .-|.+..=|+|..-+|+-.-.-++++|++|+.|.
T Consensus 171 ~PPa~~~ll~~~~~-----~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVa 218 (364)
T PRK15062 171 VPPAMRALLEDPEL-----RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVA 218 (364)
T ss_pred cHHHHHHHHcCCCC-----CccEEEecCEeEEEeccchhHHHHHHcCCCeEEe
Confidence 35677788865543 4566777899999999999999999999999986
No 146
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=33.72 E-value=1.5e+02 Score=27.05 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCeeEEEEec--CCCCCcc-hHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeec-CCceecccccHHHH
Q 018280 199 EGVLERAYCSE--TRPFNQG-SRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v~E--srP~~qG-~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~-nG~v~nkiGT~~lA 274 (358)
.|..|.|+..+ ..|...+ -+-.+.+|++.+- .+++... .-|.+|+|||.|+. ||-+..|-.+..-|
T Consensus 21 ~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~---~~~~~VigaDtvv~ldgrilgKP~~~~eA 90 (193)
T COG0424 21 LGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARL---PPDALVIGADTVVVLDGRILGKPKDEEEA 90 (193)
T ss_pred CCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhC---CCCCEEEecCeEEEECCEEecCCCCHHHH
Confidence 47899998662 2232222 2223555654321 0222222 25999999999977 99999999998876
Q ss_pred H--HHHhcCC
Q 018280 275 L--CAKFHNI 282 (358)
Q Consensus 275 ~--~Ak~~~i 282 (358)
. +.+-.|.
T Consensus 91 ~~~L~~lSG~ 100 (193)
T COG0424 91 REMLRKLSGR 100 (193)
T ss_pred HHHHHHhcCC
Confidence 4 4444443
No 147
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.70 E-value=1.6e+02 Score=23.45 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=45.4
Q ss_pred chHHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhc--CCeEEEecc
Q 018280 216 GSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH--NILFYVAAP 289 (358)
Q Consensus 216 G~rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~--~iPvyV~a~ 289 (358)
|....+..|.+.|.+|.++-- ...-..+++.+.|.|.+.+- ..-|.-....++-.+|.. ++|+++-.+
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS------MTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES------SSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc------CcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 666667778888888887711 12223344578998877542 122333345566556666 788888777
Q ss_pred CccccC
Q 018280 290 LTSIDL 295 (358)
Q Consensus 290 ~~k~~~ 295 (358)
..++.+
T Consensus 90 ~~t~~~ 95 (121)
T PF02310_consen 90 HATADP 95 (121)
T ss_dssp SSGHHH
T ss_pred chhcCh
Confidence 666654
No 148
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=33.29 E-value=2.1e+02 Score=24.56 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHC-----CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch--HHHHhhhcCCcCEEEEcc
Q 018280 188 TALGVIRALHSE-----GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--AAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 188 ta~~~l~~a~~~-----g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGA 255 (358)
|+.+++..+... |+++.| . +|-..-|..| +..|.+.|..++...-. .+...+ ++.|.|+...
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~V--v-Grs~~vG~pl-a~lL~~~gatV~~~~~~t~~l~~~v--~~ADIVvsAt 79 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLV--V-GRSGIVGAPL-QCLLQRDGATVYSCDWKTIQLQSKV--HDADVVVVGS 79 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEE--E-CCCchHHHHH-HHHHHHCCCEEEEeCCCCcCHHHHH--hhCCEEEEec
Confidence 566666555443 444333 3 3434447776 67899999888887511 133456 7899887653
No 149
>PRK15029 arginine decarboxylase; Provisional
Probab=33.24 E-value=1.5e+02 Score=32.89 Aligned_cols=86 Identities=6% Similarity=0.026 Sum_probs=53.0
Q ss_pred EEEEecCCCCC------cchHHHHHHHHhCCCCeEEEcchHHHHhhh-c-CCcCEEEEcceeeecCCceecccccHHHHH
Q 018280 204 RAYCSETRPFN------QGSRLTAFELVHDRIPATLIADSAAAALMK-D-GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (358)
Q Consensus 204 ~V~v~EsrP~~------qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~-~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~ 275 (358)
+|.++|..+.. +-.+..+..|.+.|..|....+..-+..+- + ..+|+||+ |.-+.+++-.. -|.-.+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 46677766642 223344678999999999998765554333 3 47999999 55667665222 11122222
Q ss_pred HH-HhcCCeEEEeccCcc
Q 018280 276 CA-KFHNILFYVAAPLTS 292 (358)
Q Consensus 276 ~A-k~~~iPvyV~a~~~k 292 (358)
+- +..++|+++++...+
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 22 235899999976553
No 150
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.19 E-value=1.1e+02 Score=29.51 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=39.5
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHHhCCCCeEEEc---------chHHHHhhhcCCcCEEEE
Q 018280 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (358)
|.|+-+..|..+.++|. +.+ +.|.=.+|.. .....+.|||+.+++ |..+...+++.++|.+++
T Consensus 102 g~g~nl~al~~~~~~~~l~~~i~~visn~~~~------~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivl 175 (289)
T PRK13010 102 KFDHCLNDLLYRWRMGELDMDIVGIISNHPDL------QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVL 175 (289)
T ss_pred CCCccHHHHHHHHHCCCCCcEEEEEEECChhH------HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEE
Confidence 34666666666666664 344 3344555532 122456799999865 345566677788998877
Q ss_pred c
Q 018280 254 G 254 (358)
Q Consensus 254 G 254 (358)
.
T Consensus 176 a 176 (289)
T PRK13010 176 A 176 (289)
T ss_pred e
Confidence 5
No 151
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=32.84 E-value=82 Score=27.94 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=36.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 229 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI 229 (358)
+-+-|+-|.- .|+.+..|+ .||++-|.+-|+-=.+.-.+| |..|.+.|.
T Consensus 80 ~AdlVIsHAG--------aGS~letL~----l~KPlivVvNd~LMDNHQ~EL-A~qL~~egy 128 (170)
T KOG3349|consen 80 SADLVISHAG--------AGSCLETLR----LGKPLIVVVNDSLMDNHQLEL-AKQLAEEGY 128 (170)
T ss_pred hccEEEecCC--------cchHHHHHH----cCCCEEEEeChHhhhhHHHHH-HHHHHhcCc
Confidence 4466666653 366666664 499999999999888777777 788999885
No 152
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=32.30 E-value=78 Score=30.27 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcce
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGAD 256 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd 256 (358)
++++.+++.|..++|+++++.|..-|.+. + ..-..+-...| ..+..+.++.++|.++.+.|
T Consensus 14 ~~~~~l~~~~~g~~vi~~d~~~~~~~~~~-~----d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d 78 (326)
T PRK12767 14 QLVKALKKSLLKGRVIGADISELAPALYF-A----DKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLID 78 (326)
T ss_pred HHHHHHHHhccCCEEEEECCCCcchhhHh-c----cCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCc
Confidence 77888888777799999999988766543 1 11111000112 24445566788999998876
No 153
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.11 E-value=1.7e+02 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=23.0
Q ss_pred HHHHHhCCCCeEEEcch-HHHHhhhcCCcCEEEEcce
Q 018280 221 AFELVHDRIPATLIADS-AAAALMKDGRVSAVIVGAD 256 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Ds-a~~~~m~~~~vd~VivGAd 256 (358)
...|.+.|+++.+|..+ -....++..++|.|+...+
T Consensus 29 ~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 29 LAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred HHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 56788888888887422 3333344467888887643
No 154
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=32.02 E-value=1.7e+02 Score=21.39 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHCCC-eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhh
Q 018280 192 VIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (358)
Q Consensus 192 ~l~~a~~~g~-~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m 243 (358)
.+.+|.+++. ..+||+.|..-...-..+ ...+.+.|+++..+++.-+..+-
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i-~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEI-LKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHH-HHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHH-HHHHHHcCCeEEEeCHHHHHHHc
Confidence 4455555554 677999998322222234 44677889999999998877654
No 155
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=31.95 E-value=1.8e+02 Score=27.59 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHHhCCCCeEEEcchHHH----HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 222 FELVHDRIPATLIADSAAA----ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 222 ~eL~~~GI~vtlI~Dsa~~----~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+.|...|+++.+..|.... ..+ .+=|.+|+- .-.|..-+ +..++-.||.+|+|+++++...
T Consensus 160 ~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dl~I~i----S~sG~t~~---~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 160 HKFLRIGVRCQAYDDAHIMLMSAALL--QEGDVVLVV----SHSGRTSD---VIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred HHHhhCCCeEEEcCCHHHHHHHHhcC--CCCCEEEEE----eCCCCCHH---HHHHHHHHHHCCCeEEEEeCCC
Confidence 3455667777766665433 234 556666552 23443332 6677889999999999987543
No 156
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=31.81 E-value=3.6e+02 Score=25.63 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=62.8
Q ss_pred cccccHHHHHHHH---HHCC----CeeEEEEecCC--CCCcchHHHHHHHHhCCCCeEEEc--chHHHHhhhcCCcCEEE
Q 018280 184 AGYGTALGVIRAL---HSEG----VLERAYCSETR--PFNQGSRLTAFELVHDRIPATLIA--DSAAAALMKDGRVSAVI 252 (358)
Q Consensus 184 ~g~~ta~~~l~~a---~~~g----~~~~V~v~Esr--P~~qG~rlta~eL~~~GI~vtlI~--Dsa~~~~m~~~~vd~Vi 252 (358)
+|-.|+...++.| .+.+ .++.|+-++-- |..-+---.+..|.++|+.|-..+ |-.++.-+..-.|-.|+
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavM 156 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVM 156 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEec
Confidence 4567887665444 3322 25667655422 322233234667999998876433 66667666333444444
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
=.+-=|-+|=++.|+ |.+-++-.+.+||++|=|..-+.
T Consensus 157 Pl~aPIGSg~G~~n~---~~l~iiie~a~VPviVDAGiG~p 194 (262)
T COG2022 157 PLGAPIGSGLGLQNP---YNLEIIIEEADVPVIVDAGIGTP 194 (262)
T ss_pred cccccccCCcCcCCH---HHHHHHHHhCCCCEEEeCCCCCh
Confidence 444444444445554 66777777779999998776553
No 157
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=31.61 E-value=5.7e+02 Score=26.01 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=57.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe-cC---------CCCCcchHHHHHHHHhCCCCeEEEcch--
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS-ET---------RPFNQGSRLTAFELVHDRIPATLIADS-- 237 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~-Es---------rP~~qG~rlta~eL~~~GI~vtlI~Ds-- 237 (358)
+.|+++..+ |++...++..+...++.+-++-. +. ++..-|.+.++..|.+.|||.+++.-.
T Consensus 65 d~ii~~~~t-------f~~~~~~~~~~~~~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~g~~~ 137 (452)
T cd00578 65 DGLIVWMHT-------FGPAKMWIAGLSELRKPVLLLATQFNREIPDFMNLNQSACGLREFGNILARLGIPFKVVYGHWK 137 (452)
T ss_pred cEEEEcccc-------cccHHHHHHHHHhcCCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHHcCCceeEEECCCC
Confidence 556655444 34555555656555666655554 33 344447777788899999999987422
Q ss_pred --H-------------HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 238 --A-------------AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 238 --a-------------~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
. +-.-| ++....++|.- ..| ++.-.+. -..+-+.+|+.|--+
T Consensus 138 d~~~~~~i~~~~raa~~~~~l--r~~rig~iG~~---~~~-~~~~~~d--~~~~~~~fG~~v~~i 194 (452)
T cd00578 138 DEDVLRKIESWARAAAAVATL--RGLRVGRFGDR---MRG-MAVTEGD--KVLAQIKFGVSVEYL 194 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHh--hcCceEEECCC---cCC-cEEecCC--HHHHHHhhCeEEEEE
Confidence 1 11223 55667788842 233 3332222 223356678887643
No 158
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.36 E-value=2.2e+02 Score=23.53 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=51.0
Q ss_pred EEEEecCCCcccccccccHHHHH-HHHHHCCCeeE-EEEecCCC-CCcchHHHHHHHH---hCCCCeEEEcchHHHHhhh
Q 018280 171 SVLTHCNTGSLATAGYGTALGVI-RALHSEGVLER-AYCSETRP-FNQGSRLTAFELV---HDRIPATLIADSAAAALMK 244 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l-~~a~~~g~~~~-V~v~EsrP-~~qG~rlta~eL~---~~GI~vtlI~Dsa~~~~m~ 244 (358)
+|..++.+| ..-+.+ +.+.+ ...++ |-+.+++| -..|..+ . ++. ..|++++ |+ ...++
T Consensus 2 rV~i~G~~G--------rMG~~i~~~i~~-~~~~~lv~~v~~~~~~~~g~d~-g-~~~~~~~~~~~v~---~~-l~~~~- 65 (124)
T PF01113_consen 2 RVGIVGASG--------RMGRAIAEAILE-SPGFELVGAVDRKPSAKVGKDV-G-ELAGIGPLGVPVT---DD-LEELL- 65 (124)
T ss_dssp EEEEETTTS--------HHHHHHHHHHHH-STTEEEEEEEETTTSTTTTSBC-H-HHCTSST-SSBEB---S--HHHHT-
T ss_pred EEEEECCCC--------HHHHHHHHHHHh-cCCcEEEEEEecCCcccccchh-h-hhhCcCCcccccc---hh-HHHhc-
Confidence 355565554 443333 44444 34444 66667776 4556654 2 344 3344444 33 34455
Q ss_pred cCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 245 DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 245 ~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.++|.+| +.-+.-+++..+-.|.++|+|+++.+.-+
T Consensus 66 -~~~DVvI----------DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 66 -EEADVVI----------DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -TH-SEEE----------EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred -ccCCEEE----------EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 4577554 33467778888888999999999975433
No 159
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=31.30 E-value=1.7e+02 Score=26.91 Aligned_cols=37 Identities=19% Similarity=-0.045 Sum_probs=26.5
Q ss_pred CCcCEEEEcceeeecCCce----------ecccccHHHHHHHHhcCC
Q 018280 246 GRVSAVIVGADRVAANGDT----------ANKIGTYSLALCAKFHNI 282 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v----------~nkiGT~~lA~~Ak~~~i 282 (358)
.++|.|+--|-....+++. .|-.||..+.-+|+++++
T Consensus 56 ~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 56 EGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred CCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 6789888766433222321 478899999999999997
No 160
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=31.23 E-value=28 Score=35.22 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe----------cC--CCCCcchH-HHHHHHHhCCCC---e
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS----------ET--RPFNQGSR-LTAFELVHDRIP---A 231 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~----------Es--rP~~qG~r-lta~eL~~~GI~---v 231 (358)
+..++||+ +|.+.++|.+. ++|..+.++| .+.++|+ ++ -|...|.- +--.+|.+.||+ =
T Consensus 51 ~~tvfLtl--tgamisaGLr~--~ii~~LIr~g-~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~d 125 (384)
T PRK00770 51 GVTVGLTL--SGAMTPAGFGV--SALAPLIEAG-FIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIYD 125 (384)
T ss_pred CCcEEEEe--ccchhhhhcCh--HHHHHHHHcC-CccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCcccc
Confidence 44556665 68898887761 2345555544 5777776 23 47777762 334579999964 3
Q ss_pred EEEcchHHHHhhhcCCcCEEEEcce--eeecCCceecccccH-------------HHHHHHHhcCCeEEEeccC
Q 018280 232 TLIADSAAAALMKDGRVSAVIVGAD--RVAANGDTANKIGTY-------------SLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 232 tlI~Dsa~~~~m~~~~vd~VivGAd--~i~~nG~v~nkiGT~-------------~lA~~Ak~~~iPvyV~a~~ 290 (358)
++|+....-.+- +-++.++=++. ....-+.++..+|-+ .+-..|.++||||||=+.+
T Consensus 126 v~ip~e~~~~~e--~~l~~il~~~~~~~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~~ 197 (384)
T PRK00770 126 IIFDYDVLLETD--AFIREILKAEPFQKRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSPG 197 (384)
T ss_pred cCcChHHHHHHH--HHHHHHHHhccccCCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCch
Confidence 455543332221 22222222221 111122222222322 3445688899999986544
No 161
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.20 E-value=1.9e+02 Score=25.30 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
+..|...|+++..+.|... ..+ .+=|.+|+ |...|.. --+..++-.||++|+|++.++..
T Consensus 52 ~~~l~~~g~~~~~~~~~~~-~~~--~~~D~vI~----iS~sG~t---~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 52 AMRLMHLGLNVYVVGETTT-PAI--GPGDLLIA----ISGSGET---SSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred HHHHHhCCCeEEEeCCCCC-CCC--CCCCEEEE----EcCCCCc---HHHHHHHHHHHHCCCeEEEEECC
Confidence 3456666777777766432 223 45555543 3334432 22345667899999999998654
No 162
>PRK08462 biotin carboxylase; Validated
Probab=30.96 E-value=1.1e+02 Score=30.88 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=43.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC--cchHHHHHHHHhCCCCe-------EEEcchHHH
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN--QGSRLTAFELVHDRIPA-------TLIADSAAA 240 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~--qG~rlta~eL~~~GI~v-------tlI~Dsa~~ 240 (358)
.+||..+.+ -.+..+++.|++.|. +|+++-+.|.. .+.+ ++...+.+ .|+--..+-
T Consensus 5 k~ili~~~g--------~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~-----~ad~~~~~~~~~~~~~y~~~~~l~ 69 (445)
T PRK08462 5 KRILIANRG--------EIALRAIRTIQEMGK--EAIAIYSTADKDALYLK-----YADAKICIGGAKSSESYLNIPAII 69 (445)
T ss_pred CEEEEECCc--------HHHHHHHHHHHHcCC--CEEEEechhhcCCchhh-----hCCEEEEeCCCchhcccCCHHHHH
Confidence 467776542 235788999998885 45555444433 2222 22222211 233213444
Q ss_pred HhhhcCCcCEEEEcceeeecCC
Q 018280 241 ALMKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG 262 (358)
.+-++.++|.|+-|.+....|.
T Consensus 70 ~~~~~~~~D~i~pg~g~lse~~ 91 (445)
T PRK08462 70 SAAEIFEADAIFPGYGFLSENQ 91 (445)
T ss_pred HHHHHcCCCEEEECCCccccCH
Confidence 5556788999999986555454
No 163
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=30.92 E-value=40 Score=29.88 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCcCEEEEcce-eeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCC
Q 018280 246 GRVSAVIVGAD-RVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (358)
Q Consensus 246 ~~vd~VivGAd-~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~ 298 (358)
..+|..|.||+ +|+.+|.+++.-|...- -+....-.-++++.+..|+.+...
T Consensus 83 ~~ad~gIt~a~~aIAetGtlvl~~~~~~~-r~~s~lP~~hi~vv~~~kIv~~l~ 135 (189)
T PF02589_consen 83 EDADVGITGANYAIAETGTLVLSSGPGNR-RAVSLLPPVHIVVVGASKIVPNLE 135 (189)
T ss_dssp HH-SEEEE--SEEETTTTEEEE---TTT--GGGGTSSSEEEEEEEGGGEESSHH
T ss_pred hcCCEEEECccHHHHhCCeEEEeCCCCCh-hhhhhCCCeEEEEEcHHHcCCCHH
Confidence 47899999999 99999999999988776 334444455678888889887543
No 164
>PRK00648 Maf-like protein; Reviewed
Probab=30.85 E-value=2.9e+02 Score=24.99 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=31.8
Q ss_pred CcCEEEEcceeee-cCCceecccccHHHH--HHHHhcCCeEEEe
Q 018280 247 RVSAVIVGADRVA-ANGDTANKIGTYSLA--LCAKFHNILFYVA 287 (358)
Q Consensus 247 ~vd~VivGAd~i~-~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~ 287 (358)
.-+.+|+|||.|. -||.+..|=.+..-| ++.+..|.+..|.
T Consensus 63 ~~~~~VI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~ 106 (191)
T PRK00648 63 FPDELIITADTIVWYDGKVLGKPKDEEEAVEMLRTLSGKTHEVI 106 (191)
T ss_pred CCCCEEEEeCeEEEECCEEeCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 3578999999976 499999999998876 4666667655554
No 165
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=30.62 E-value=1.3e+02 Score=29.17 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCc--ee
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD--TA 265 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~--v~ 265 (358)
-+...+.+|.+.|.+.-|+++|.=|...=.++ .+++.+.| +++|=-|.-+.+. +..-++=+=...|+.-|. ++
T Consensus 77 ~aadai~EAida~i~liv~ITEgIP~~D~~~~-~~~a~~~g--~~iiGPncpGiI~--Pg~~kiGimp~~i~~~G~IGiV 151 (293)
T COG0074 77 FAADAILEAIDAGIKLVVIITEGIPVLDMLEL-KRYAREKG--TRLIGPNCPGIIT--PGECKIGIMPGNIYKPGNIGIV 151 (293)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHH-HHHHHhcC--CEEECCCCCccCc--CCcceeeechhhhccCCceEEE
Confidence 35566778888899999999999999877665 45677777 6677666666655 553322221256666665 48
Q ss_pred cccccHH--HHHHHHhcCCeEEE
Q 018280 266 NKIGTYS--LALCAKFHNILFYV 286 (358)
Q Consensus 266 nkiGT~~--lA~~Ak~~~iPvyV 286 (358)
+|.||+. ++--=++.|.=++-
T Consensus 152 SrSGTLTyE~~~qlt~~G~GqS~ 174 (293)
T COG0074 152 SRSGTLTYEAVSQLTEAGLGQST 174 (293)
T ss_pred ecCcchHHHHHHHHHhcCCceEE
Confidence 8888754 44444444544443
No 166
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=30.58 E-value=1.4e+02 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=23.3
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.++|.|..|- -.+..+++|+.+|||++..+++.
T Consensus 103 ~~pDlvi~d~------~~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 103 WGPDLVVADP------LAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred cCCCEEEeCc------HHHHHHHHHHHhCCCeEEeeccc
Confidence 4566665553 23456789999999999887654
No 167
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=30.54 E-value=5.4e+02 Score=25.42 Aligned_cols=84 Identities=20% Similarity=0.178 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHHhCCCCeEEEcch---HHHHhhhcCCcCEEEEcceeeecCCcee
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~eL~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~i~~nG~v~ 265 (358)
..++....+.|. +|++. +|.+.+. .+....+...|++++.+... .+-..+ +.+..+|++- . ..
T Consensus 83 ~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i-~~~tklV~le--~------p~ 149 (380)
T TIGR01325 83 QAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAV-KPNTKLVFVE--T------PS 149 (380)
T ss_pred HHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhc-CCCceEEEEE--C------CC
Confidence 334444444454 45553 4544332 22233466789999888633 222222 1344444442 1 22
Q ss_pred ccccc----HHHHHHHHhcCCeEEE
Q 018280 266 NKIGT----YSLALCAKFHNILFYV 286 (358)
Q Consensus 266 nkiGT----~~lA~~Ak~~~iPvyV 286 (358)
|..|+ -.++-+||++|++++|
T Consensus 150 np~g~~~dl~~I~~la~~~gi~liv 174 (380)
T TIGR01325 150 NPLGELVDIAALAELAHAIGALLVV 174 (380)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEE
Confidence 34443 4566788999999887
No 168
>PRK05634 nucleosidase; Provisional
Probab=30.46 E-value=38 Score=30.40 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.5
Q ss_pred eecccccHHHHHHHHhcCCeEEEe
Q 018280 264 TANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+=..=++.+|.+|+.+||||+++
T Consensus 128 ~~vDME~aAva~va~~~~vPf~~i 151 (185)
T PRK05634 128 DLVDMEGYAVAAVAAEFGVPCRLV 151 (185)
T ss_pred eEEecHHHHHHHHHHHhCCCEEEE
Confidence 445667889999999999999996
No 169
>PLN02206 UDP-glucuronate decarboxylase
Probab=30.45 E-value=1.8e+02 Score=29.79 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-chHHHHhhhcC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-DSAAAALMKDG 246 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-Dsa~~~~m~~~ 246 (358)
.+.+||.-+-+|-+ | ..+++.+.++|. +|++....+.....++. ..+. ..++.++. |- .-..+ .
T Consensus 118 ~~~kILVTGatGfI-----G--s~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~-~~~~--~~~~~~i~~D~-~~~~l--~ 182 (442)
T PLN02206 118 KGLRVVVTGGAGFV-----G--SHLVDRLMARGD--SVIVVDNFFTGRKENVM-HHFS--NPNFELIRHDV-VEPIL--L 182 (442)
T ss_pred CCCEEEEECcccHH-----H--HHHHHHHHHCcC--EEEEEeCCCccchhhhh-hhcc--CCceEEEECCc-cChhh--c
Confidence 34677776655432 1 124455666664 56665433211111111 1111 22344442 22 11234 4
Q ss_pred CcCEEEEcceeeecCCc--------eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 247 RVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
++|.||=-|-....... -.|-.||..+.-+|+.++++|+.+...
T Consensus 183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~ 234 (442)
T PLN02206 183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234 (442)
T ss_pred CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCh
Confidence 68888876643211111 167889999999999999987766544
No 170
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=30.15 E-value=60 Score=30.89 Aligned_cols=99 Identities=17% Similarity=0.017 Sum_probs=54.5
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCE
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (358)
+||..+.+ |.+-+.|..+.++ +...|+.+ +|+...-.. ...+..++++.+.|.
T Consensus 2 riLI~Gas--------G~lG~~l~~~l~~-~~~~v~~~-~r~~~dl~d-----------------~~~~~~~~~~~~pd~ 54 (286)
T PF04321_consen 2 RILITGAS--------GFLGSALARALKE-RGYEVIAT-SRSDLDLTD-----------------PEAVAKLLEAFKPDV 54 (286)
T ss_dssp EEEEETTT--------SHHHHHHHHHHTT-TSEEEEEE-STTCS-TTS-----------------HHHHHHHHHHH--SE
T ss_pred EEEEECCC--------CHHHHHHHHHHhh-CCCEEEEe-CchhcCCCC-----------------HHHHHHHHHHhCCCe
Confidence 56666554 4444445444443 45778877 666332111 113344454456787
Q ss_pred EEEcceeee-----cC---CceecccccHHHHHHHHhcCCeEEEeccCccccCC
Q 018280 251 VIVGADRVA-----AN---GDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLT 296 (358)
Q Consensus 251 VivGAd~i~-----~n---G~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~ 296 (358)
||--|--.- .| -.-+|-.|+..+|-+|+.+|++++-++..+=|+-.
T Consensus 55 Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 55 VINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp EEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred EeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 776652111 11 23478899999999999999999988776666643
No 171
>PRK06460 hypothetical protein; Provisional
Probab=29.84 E-value=3.2e+02 Score=27.08 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=31.8
Q ss_pred HHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeee-cCCceecccccHHHHHHHHhcCCeEEE
Q 018280 223 ELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 223 eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~-~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
.+...|+++..++- .....+. +++...|++ +... +.|.+.+. -.++-+||.||++++|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~~-~~~tklV~l--~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKAK-SKRYDVVFV--ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHhc-CCCceEEEE--ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 34566777776642 1222222 345666665 2221 24555543 2467788999988765
No 172
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.83 E-value=97 Score=24.68 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=34.3
Q ss_pred HHHhCCCCeEEEcchHHH--HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 223 ELVHDRIPATLIADSAAA--ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 223 eL~~~GI~vtlI~Dsa~~--~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
.+.+.|+++.+..-+... ... .+.|.|++|.+--+.-. .+--.+..+|+|+.+.-
T Consensus 26 ~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~~~~~---------~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 26 AAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVAYMLP---------DLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHHHHHH---------HHHHHhhhcCCCEEEeC
Confidence 356677776665544433 345 78899999876543211 23445677899999863
No 173
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=29.66 E-value=65 Score=29.33 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 240 ~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
..++.+++.|+||.|--.=..-|.-+.-.||...|+-|..+|||=+.+.-.
T Consensus 84 ~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 84 DGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 344534469999999765555566789999999999999999999987433
No 174
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.41 E-value=4e+02 Score=23.58 Aligned_cols=31 Identities=0% Similarity=-0.049 Sum_probs=21.8
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEE
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~Viv 253 (358)
++.+++.|+++..|+.+.-+.+- +..|.++.
T Consensus 126 ~~~ak~~g~~~I~iT~~~~s~L~--~~ad~~l~ 156 (188)
T PRK13937 126 LEKARELGMKTIGLTGRDGGKMK--ELCDHLLI 156 (188)
T ss_pred HHHHHHCCCeEEEEeCCCCChhH--HhCCEEEE
Confidence 45677888888888876666665 56666654
No 175
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=29.40 E-value=4.7e+02 Score=24.36 Aligned_cols=111 Identities=22% Similarity=0.154 Sum_probs=60.9
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-eeEEE---EecCCCC-Cc--------ch-
Q 018280 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-LERAY---CSETRPF-NQ--------GS- 217 (358)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~-~~~V~---v~EsrP~-~q--------G~- 217 (358)
.++..+.+.|. +.+|+..+- |.| | -.+++.+...|. ++.++ ++|-.-. .| |.
T Consensus 21 ~~g~~~Q~~L~------~~~VliiG~-Ggl-----G--s~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~ 86 (245)
T PRK05690 21 GFDFDGQEKLK------AARVLVVGL-GGL-----G--CAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQP 86 (245)
T ss_pred hcCHHHHHHhc------CCeEEEECC-CHH-----H--HHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCCh
Confidence 45667777787 456777764 433 2 224444455575 34444 1221111 11 21
Q ss_pred --HHHHHHHHhCC--CCeEEEc----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 218 --RLTAFELVHDR--IPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 218 --rlta~eL~~~G--I~vtlI~----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
...+++|.+.+ +.++.+. ......++ +++|.||...|... --+.+.-+|+.+++||+..
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~--~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLDDDELAALI--AGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--hcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 12244566543 4444443 22334456 78999998887442 2346777899999999875
No 176
>PRK05967 cystathionine beta-lyase; Provisional
Probab=29.29 E-value=2.6e+02 Score=28.24 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=47.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHH-HHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTA-FELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta-~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
++....+.|. +|++. .|...|.+... ..+...|++++++.. ..+...++ ++..+|++-. ..|.
T Consensus 95 ~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~-~~TklV~les--------PsNP 161 (395)
T PRK05967 95 PFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMR-PNTKVVHTEA--------PGSN 161 (395)
T ss_pred HHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcC-cCceEEEEEC--------CCCC
Confidence 3444444454 56665 56666644322 346778999998853 23444552 4444444431 2244
Q ss_pred ccc----HHHHHHHHhcCCeEEE
Q 018280 268 IGT----YSLALCAKFHNILFYV 286 (358)
Q Consensus 268 iGT----~~lA~~Ak~~~iPvyV 286 (358)
.|+ ..++-+||++|++++|
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEE
Confidence 444 3567789999998876
No 177
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=29.28 E-value=2.7e+02 Score=25.77 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-CCCCeEE---EcchHHHHhhhcCCcCEEEEcceeeecCC----
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATL---IADSAAAALMKDGRVSAVIVGADRVAANG---- 262 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtl---I~Dsa~~~~m~~~~vd~VivGAd~i~~nG---- 262 (358)
.+++.+.++|...+|++....+......... .+.. .++.+.. -....+..+++..++|.||-.|-....+-
T Consensus 14 ~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~ 92 (317)
T TIGR01181 14 NFVRYILNEHPDAEVIVLDKLTYAGNLENLA-DLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISG 92 (317)
T ss_pred HHHHHHHHhCCCCEEEEecCCCcchhhhhhh-hhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcccccCchhhhhC
Confidence 3556666656556777765322111111111 2221 2333221 12234555663334898887774332111
Q ss_pred ----ceecccccHHHHHHHHhc--CCeEEEec
Q 018280 263 ----DTANKIGTYSLALCAKFH--NILFYVAA 288 (358)
Q Consensus 263 ----~v~nkiGT~~lA~~Ak~~--~iPvyV~a 288 (358)
--.|-.|+..++-+|+++ +++++.+.
T Consensus 93 ~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 93 PAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 125778899998888885 45655443
No 178
>PRK15005 universal stress protein F; Provisional
Probab=29.18 E-value=62 Score=26.65 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=26.7
Q ss_pred hcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEe
Q 018280 244 KDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 244 ~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
++.++|+|++|+.+ .| ... -+|+- ..-+.++-.+||+|+
T Consensus 104 ~~~~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 104 KKIPADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred HHcCCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 35799999999873 23 332 24764 344577788999986
No 179
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=28.90 E-value=1.4e+02 Score=30.09 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=36.6
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCE
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (358)
.||..+.. +....+...+++.+...++++ .|.+.|..+.+ + .++.....-..+-.+.++.++|.
T Consensus 2 kvliiG~G--------~~~~~l~~~l~~~~~~~~i~~---~~~n~g~~~~~----~-~~~~~~~d~~~l~~~~~~~~id~ 65 (420)
T PRK00885 2 KVLVIGSG--------GREHALAWKLAQSPLVEKVYV---APGNAGTALLA----E-NVVIDVTDIEALVAFAKEEGIDL 65 (420)
T ss_pred EEEEECCC--------HHHHHHHHHHHhCCCCCEEEE---eCCCHHHHhhc----c-ccCCCCCCHHHHHHHHHHhCCCE
Confidence 46666543 223345556666544456777 45554532211 1 12222222233444556678999
Q ss_pred EEEcceee
Q 018280 251 VIVGADRV 258 (358)
Q Consensus 251 VivGAd~i 258 (358)
|+.|.+..
T Consensus 66 vi~~~e~~ 73 (420)
T PRK00885 66 TVVGPEAP 73 (420)
T ss_pred EEECCchH
Confidence 99887754
No 180
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=28.87 E-value=5.9e+02 Score=25.29 Aligned_cols=81 Identities=17% Similarity=0.036 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeeecCCce
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDT 264 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~~nG~v 264 (358)
.+....+.+.+-|-.....++...+...-.++ ....+-...++.| -.....+++.+.|++|-
T Consensus 297 ~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~ig----------- 361 (406)
T cd01967 297 RSWHVIAALRELGMEVVAAGYEFGHDDDYERI----RKILDEGTLLVDDYNDLELEELVEKLKPDLILS----------- 361 (406)
T ss_pred chHHHHHHHHHcCCEEEEEEEecCCHHHHHHH----HhcCCCCcEEEeCCCHHHHHHHHHhcCCCEEEe-----------
Confidence 34445556666786654444443322111111 1111223344533 35555666677777752
Q ss_pred ecccccHHHHHHHHhcCCeEEEec
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+..-...|+..|+|++...
T Consensus 362 -----~~~~~~~a~~~gip~~~~~ 380 (406)
T cd01967 362 -----GIKEKYVAQKLGIPFLDLH 380 (406)
T ss_pred -----CCcchHHHHhcCCCEEecC
Confidence 2223456788899998654
No 181
>PRK15456 universal stress protein UspG; Provisional
Probab=28.82 E-value=79 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=27.5
Q ss_pred hcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 244 ~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
++.++|++++|+..= ..+.. -+|+-.-.+ .++-++||+|+
T Consensus 102 ~~~~~DLIVmG~~g~-~~~~~--llGS~a~~v-~~~a~~pVLvV 141 (142)
T PRK15456 102 EELGADVVVIGSRNP-SISTH--LLGSNASSV-IRHANLPVLVV 141 (142)
T ss_pred hhcCCCEEEEcCCCC-Cccce--ecCccHHHH-HHcCCCCEEEe
Confidence 457999999999862 22222 257765444 77788999986
No 182
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=28.77 E-value=4.4e+02 Score=23.85 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
.+=|.+|+ |...|..-| ...++-.||.+|.|+++++.
T Consensus 108 ~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 108 HAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 45566654 334554332 44567799999999999864
No 183
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.52 E-value=1.2e+02 Score=23.31 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=49.0
Q ss_pred EEEecCCCCCcchHHHHHHHHhCCC-CeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-cC
Q 018280 205 AYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-HN 281 (358)
Q Consensus 205 V~v~EsrP~~qG~rlta~eL~~~GI-~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~-~~ 281 (358)
|.+.|..|.... +..+.|...|+ .|+...+..-+ ..+++...|.+++..+ .-..-|-..+..+.+. ++
T Consensus 1 Ilivd~~~~~~~--~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~-------~~~~~~~~~~~~i~~~~~~ 71 (112)
T PF00072_consen 1 ILIVDDDPEIRE--LLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLE-------LPDGDGLELLEQIRQINPS 71 (112)
T ss_dssp EEEEESSHHHHH--HHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESS-------SSSSBHHHHHHHHHHHTTT
T ss_pred cEEEECCHHHHH--HHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEee-------ecccccccccccccccccc
Confidence 455666666543 23556778999 88877765443 4566788899888742 2223444444444444 48
Q ss_pred CeEEEeccCcc
Q 018280 282 ILFYVAAPLTS 292 (358)
Q Consensus 282 iPvyV~a~~~k 292 (358)
+|+++++...+
T Consensus 72 ~~ii~~t~~~~ 82 (112)
T PF00072_consen 72 IPIIVVTDEDD 82 (112)
T ss_dssp SEEEEEESSTS
T ss_pred ccEEEecCCCC
Confidence 99999875443
No 184
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.45 E-value=3.5e+02 Score=28.95 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=27.6
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D 236 (358)
+..++|--=+|. +|..++..+|.+.+||++.|.+
T Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 238 (578)
T PRK15490 205 PVELIIRSLTPE-LRQDFFLKEVLEEQVEVLEIAK 238 (578)
T ss_pred ceeEEEeecCcc-cCcchhHHHHHhcCCceEEeec
Confidence 577777766775 5888889999999999998864
No 185
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=28.21 E-value=3.1e+02 Score=25.94 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHH-HhCCCCeEEEcch----------------------HHHHhhhcCC
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFEL-VHDRIPATLIADS----------------------AAAALMKDGR 247 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL-~~~GI~vtlI~Ds----------------------a~~~~m~~~~ 247 (358)
.+.+.+.++|.. |.+. ++|.... . ++ .+.|+++..++-. .+..++++.+
T Consensus 19 ~La~~L~~~g~e--V~vv-~~~~~~~----~-~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~~~ 90 (348)
T TIGR01133 19 AVAEELIKRGVE--VLWL-GTKRGLE----K-RLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKKFK 90 (348)
T ss_pred HHHHHHHhCCCE--EEEE-eCCCcch----h-cccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555555644 4444 4444211 1 23 3468888777531 2233466677
Q ss_pred cCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEE
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
.|.|+.- +... ....+++++..++|++.
T Consensus 91 pDvVi~~-------~~~~----~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 91 PDAVIGF-------GGYV----SGPAGLAAKLLGIPLFH 118 (348)
T ss_pred CCEEEEc-------CCcc----cHHHHHHHHHcCCCEEE
Confidence 8888662 1111 22334567888999964
No 186
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.13 E-value=4e+02 Score=23.13 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (358)
++.+.+.|+++..|+|+.-+.+- +..|.++.-
T Consensus 95 ~~~ak~~g~~iI~IT~~~~s~la--~~ad~~l~~ 126 (179)
T cd05005 95 AEKAKKAGAKVVLITSNPDSPLA--KLADVVVVI 126 (179)
T ss_pred HHHHHHCCCeEEEEECCCCCchH--HhCCEEEEe
Confidence 56678899999999998877776 667876653
No 187
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.99 E-value=6.5e+02 Score=25.52 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=51.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh--CCCCeEEE--cch-HHHHh
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH--DRIPATLI--ADS-AAAAL 242 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~--~GI~vtlI--~Ds-a~~~~ 242 (358)
.|.++...+.. ..++++-+.+.+-|-....+++.+.+..--.++.+ .|.+ .+.++.++ .|. .+...
T Consensus 302 ~gkrv~i~g~~--------~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~d~~e~~~~ 372 (435)
T cd01974 302 HGKKFALYGDP--------DFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQA-LLDASPYGAGAKVYPGKDLWHLRSL 372 (435)
T ss_pred CCCEEEEEcCh--------HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHH-HHhhcCCCCCcEEEECCCHHHHHHH
Confidence 36666666543 34566656666778777656654433222223322 2444 23333333 341 23334
Q ss_pred hhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 243 m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+++.++|++| |+..-..+|++.|+|++.+.
T Consensus 373 i~~~~pDlii----------------G~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 373 LFTEPVDLLI----------------GNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred HhhcCCCEEE----------------ECccHHHHHHHhCCCEEEee
Confidence 4455666653 33334578999999998764
No 188
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.95 E-value=4.3e+02 Score=26.92 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=45.7
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccH
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTY 271 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~ 271 (358)
+.+.+.++| .+|.+.|.+|...=..++ .+|.+.|+.+..-.+. ...+ .+.|.||+.. .|-. +.
T Consensus 29 ~a~~L~~~G--~~V~~~D~~~~~~~~~~~-~~l~~~gi~~~~~~~~--~~~~--~~~dlVV~Sp-gi~~---------~~ 91 (458)
T PRK01710 29 LIKFLVKLG--AKVTAFDKKSEEELGEVS-NELKELGVKLVLGENY--LDKL--DGFDVIFKTP-SMRI---------DS 91 (458)
T ss_pred HHHHHHHCC--CEEEEECCCCCccchHHH-HHHHhCCCEEEeCCCC--hHHh--ccCCEEEECC-CCCC---------Cc
Confidence 335556666 478888877643211222 3488889877654332 2334 6789887763 2222 23
Q ss_pred HHHHHHHhcCCeEE
Q 018280 272 SLALCAKFHNILFY 285 (358)
Q Consensus 272 ~lA~~Ak~~~iPvy 285 (358)
+.-..|++.|+|++
T Consensus 92 p~~~~a~~~~i~i~ 105 (458)
T PRK01710 92 PELVKAKEEGAYIT 105 (458)
T ss_pred hHHHHHHHcCCcEE
Confidence 56667778888876
No 189
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.91 E-value=3.7e+02 Score=27.54 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecCCceec
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~n 266 (358)
+|..+.+.|. +|++ +.|.+.|. +++...+...|+.++++.- ..+...++ ++. ++|+ .+.. -|
T Consensus 92 al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~-~~T-k~I~-~e~p------gn 158 (432)
T PRK06702 92 AVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAN-DKT-KLVY-AESL------GN 158 (432)
T ss_pred HHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCC-cCC-eEEE-EEcC------CC
Confidence 4444444443 6666 45666543 2333347889999998752 34555552 333 4444 2332 23
Q ss_pred cc----ccHHHHHHHHhcCCeEEEe
Q 018280 267 KI----GTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 267 ki----GT~~lA~~Ak~~~iPvyV~ 287 (358)
.. ---.++-+||.||+++++=
T Consensus 159 P~~~v~Di~~I~~iA~~~gi~livD 183 (432)
T PRK06702 159 PAMNVLNFKEFSDAAKELEVPFIVD 183 (432)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEE
Confidence 33 2456788999999999873
No 190
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=27.84 E-value=1.1e+02 Score=29.07 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=47.7
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHH
Q 018280 193 IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYS 272 (358)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~ 272 (358)
|+..++++..+...-.-. -++|+-+.+.|+++.++.|+.....+ +.-|-..+.-|-++ +.
T Consensus 4 lr~l~~~~~~l~~~~ayD-------~~sA~l~e~aG~d~i~vGds~~~~~l--G~pDt~~vtl~em~-----------~~ 63 (254)
T cd06557 4 LQKMKKAGEKIVMLTAYD-------YPTAKLADEAGVDVILVGDSLGMVVL--GYDSTLPVTLDEMI-----------YH 63 (254)
T ss_pred HHHHHhCCCcEEEEeCCC-------HHHHHHHHHcCCCEEEECHHHHHHHc--CCCCCCCcCHHHHH-----------HH
Confidence 566666666554432221 24576677889999999999887777 66665555544443 22
Q ss_pred HHHHHHhcCCeEEEe
Q 018280 273 LALCAKFHNILFYVA 287 (358)
Q Consensus 273 lA~~Ak~~~iPvyV~ 287 (358)
+..+++..+.||+++
T Consensus 64 ~~~V~r~~~~p~via 78 (254)
T cd06557 64 TRAVRRGAPRALVVA 78 (254)
T ss_pred HHHHHhcCCCCeEEE
Confidence 445677778887664
No 191
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=27.76 E-value=6.2e+02 Score=25.18 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=43.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
++..+.+.|. +|++. +|.+.+. .+....+...|+.++.+.- ..+...++ ++..+|++- . ..|.
T Consensus 92 al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~-~~tklV~ie--~------p~Np 158 (390)
T PRK08133 92 VVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVR-PNTKLFFLE--T------PSNP 158 (390)
T ss_pred HHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcC-cCCeEEEEE--C------CCCC
Confidence 3444444454 56653 3444332 2222246678999888742 23333442 444455431 1 2344
Q ss_pred ccc----HHHHHHHHhcCCeEEE
Q 018280 268 IGT----YSLALCAKFHNILFYV 286 (358)
Q Consensus 268 iGT----~~lA~~Ak~~~iPvyV 286 (358)
.|. -.++-+||+||++++|
T Consensus 159 tG~v~dl~~I~~la~~~gi~liv 181 (390)
T PRK08133 159 LTELADIAALAEIAHAAGALLVV 181 (390)
T ss_pred CCCcCCHHHHHHHHHHcCCEEEE
Confidence 444 4577789999999887
No 192
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=27.65 E-value=2.3e+02 Score=28.89 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
...+||..+-+|-+ | ..+++.+.++|. +|++...........+ ..+.. .-.+.++.-...-..+ .+
T Consensus 119 ~~mkILVTGatGFI-----G--s~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~--~~~~~-~~~~~~~~~Di~~~~~--~~ 184 (436)
T PLN02166 119 KRLRIVVTGGAGFV-----G--SHLVDKLIGRGD--EVIVIDNFFTGRKENL--VHLFG-NPRFELIRHDVVEPIL--LE 184 (436)
T ss_pred CCCEEEEECCccHH-----H--HHHHHHHHHCCC--EEEEEeCCCCccHhHh--hhhcc-CCceEEEECccccccc--cC
Confidence 34678777655432 1 224566666664 5666553321111111 11211 1134444322222234 57
Q ss_pred cCEEEEcceeeecCCc--------eecccccHHHHHHHHhcCCeEEEecc
Q 018280 248 VSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 248 vd~VivGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
+|.|+=-|-....... -.|-.||..+.-+|+.+++.|+.+..
T Consensus 185 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS 234 (436)
T PLN02166 185 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST 234 (436)
T ss_pred CCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 8888877643211111 17889999999999999998776543
No 193
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=27.48 E-value=2.3e+02 Score=25.28 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCeeEEE---EecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeec-CCceecccccHHHH
Q 018280 199 EGVLERAY---CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~---v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~-nG~v~nkiGT~~lA 274 (358)
.|..|.++ ++|+.+..+...-.+.+|+..+ +-.+.++..-+.+++|||.|+. ||.++.|=.+..-|
T Consensus 17 ~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~liI~aDtvv~~~g~il~KP~~~~eA 86 (180)
T cd00555 17 LGIPFEVVPSDIDETPIKGESPEDYVLRLAEAK----------AEAVAARLPPDALVIGADTVVVLDGRILGKPKDREEA 86 (180)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCCEEEEecEEEEECCEEEcCCCCHHHH
Confidence 47788877 4466555443322344454432 1112211112679999999865 99999999999876
Q ss_pred --HHHHhcCCeEEEe
Q 018280 275 --LCAKFHNILFYVA 287 (358)
Q Consensus 275 --~~Ak~~~iPvyV~ 287 (358)
++-...|.+.-|.
T Consensus 87 ~~~L~~lsg~~h~v~ 101 (180)
T cd00555 87 REMLKRLSGRTHEVY 101 (180)
T ss_pred HHHHHHHcCCCcEEE
Confidence 3555566655443
No 194
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=27.40 E-value=7.6e+02 Score=26.11 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=65.0
Q ss_pred cChHHHHHHHHh---ccccCcHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHh--CCCCcccHHHHHHHH
Q 018280 41 RDSADGWSAIRE---MVVRGAPA-IAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVS--SRPTAVNLSDAAAKL 114 (358)
Q Consensus 41 ~~~~~v~~aI~~---m~vrGA~a-i~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~--aRPtav~l~nai~~~ 114 (358)
.++.+++.++.. |..||.+= |=.....+++..+.+. ...+..+|...++...+...+ .+|..-.|--+++-.
T Consensus 53 ~~~~~~~~~~a~~~l~garGnSGvIlsq~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~a~~av~~pgegTmLdvl~~a 130 (530)
T TIGR03599 53 GSVGEVAKALAKGLLMGARGNSGVILSQIFRGFAKALEDK--EELDAEDLAAAFQEAVETAYKAVMKPVEGTILTVLREA 130 (530)
T ss_pred CCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 467778888775 66788754 3333445666666543 235678888999999888886 566665677777666
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 018280 115 KEIISKAAATASEANSVFQAYIEAAEIMLK 144 (358)
Q Consensus 115 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (358)
-+.+.+......+..++.+...+.+++-.+
T Consensus 131 aea~~~~~~~~~~~~e~l~~a~~aA~~al~ 160 (530)
T TIGR03599 131 AEAAEKAAEEGDDLEEVMEAAVEAAEKALA 160 (530)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 655554433344566666666666555443
No 195
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.31 E-value=4.8e+02 Score=24.26 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHhCC--CCeEEEc-----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc-c
Q 018280 221 AFELVHDR--IPATLIA-----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT-S 292 (358)
Q Consensus 221 a~eL~~~G--I~vtlI~-----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~-k 292 (358)
+..|.+.+ +.++.+. ++....+- .+.|.||...|.+.. ...+.-.|+.+++||+.+.... |
T Consensus 71 ~~~l~~inP~~~V~~~~~~i~~~~~~~l~~--~~~D~VvdaiD~~~~---------k~~L~~~c~~~~ip~I~s~g~g~~ 139 (231)
T cd00755 71 AERIRDINPECEVDAVEEFLTPDNSEDLLG--GDPDFVVDAIDSIRA---------KVALIAYCRKRKIPVISSMGAGGK 139 (231)
T ss_pred HHHHHHHCCCcEEEEeeeecCHhHHHHHhc--CCCCEEEEcCCCHHH---------HHHHHHHHHHhCCCEEEEeCCcCC
Confidence 55566544 4444443 44444443 569998887776532 2346678999999999765443 4
Q ss_pred ccC
Q 018280 293 IDL 295 (358)
Q Consensus 293 ~~~ 295 (358)
+||
T Consensus 140 ~dp 142 (231)
T cd00755 140 LDP 142 (231)
T ss_pred CCC
Confidence 564
No 196
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=27.25 E-value=1.6e+02 Score=22.69 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=9.7
Q ss_pred CCcEEEEecCCCc
Q 018280 168 SKFSVLTHCNTGS 180 (358)
Q Consensus 168 ~~~~ILT~~~sg~ 180 (358)
.+..|++||.+|.
T Consensus 60 ~~~~ivv~C~~G~ 72 (100)
T cd01523 60 DDQEVTVICAKEG 72 (100)
T ss_pred CCCeEEEEcCCCC
Confidence 4567888999863
No 197
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.13 E-value=6.2e+02 Score=25.84 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecC-Cceec
Q 018280 193 IRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAAN-GDTAN 266 (358)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~n-G~v~n 266 (358)
+..+.+.|. +|++... .+.|. .+....|...|++++++.| ..+...+. ++..+| + .+..... | .+.
T Consensus 101 l~~ll~~Gd--~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~-~~tk~V-~-~e~~~Np~~-~v~ 172 (437)
T PRK05613 101 ILNLAGAGD--HIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQ-PNTKAF-F-GETFANPQA-DVL 172 (437)
T ss_pred HHHhcCCCC--EEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCC-ccCeEE-E-EECCCCCCC-ccc
Confidence 433333343 6776522 23232 2223456788999999863 22333442 333333 3 2332211 2 222
Q ss_pred ccccHHHHHHHHhcCCeEEEe
Q 018280 267 KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 267 kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
. --.++-+||++|++++|=
T Consensus 173 d--i~~I~~la~~~gi~livD 191 (437)
T PRK05613 173 D--IPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred C--HHHHHHHHHHcCCeEEEE
Confidence 2 345778899999999873
No 198
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.10 E-value=2.8e+02 Score=25.94 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=36.9
Q ss_pred HHHHHhCCCCeEEEcchHHH----HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 221 AFELVHDRIPATLIADSAAA----ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~----~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
++.|...|+++....|.... ..| ++=|.+|+ +.-.|..-. +..++-.||.+|+|+++++..
T Consensus 147 ~~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dv~I~----iS~sg~~~~---~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 147 AWKLMKIGINAVAERDMHALLATVQAL--SPDDLLLA----ISYSGERRE---LNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHhhCCCeEEEcCChHHHHHHHHhC--CCCCEEEE----EcCCCCCHH---HHHHHHHHHHcCCCEEEEcCC
Confidence 34455667776666554322 235 56665553 233443222 455678999999999998764
No 199
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.06 E-value=1.8e+02 Score=26.91 Aligned_cols=87 Identities=24% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCC-CeEEEc-chHHHHhhhc
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIA-DSAAAALMKD 245 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI-~vtlI~-Dsa~~~~m~~ 245 (358)
.|+.||=.+ ||| ||-+| +|-+.. + +|+-+|.-+.+.-. +.+.|...|+ +|+++. |.+.||- ..
T Consensus 72 ~g~~VLEIG-tGs----GY~aA--vla~l~--~---~V~siEr~~~L~~~--A~~~L~~lg~~nV~v~~gDG~~G~~-~~ 136 (209)
T COG2518 72 PGDRVLEIG-TGS----GYQAA--VLARLV--G---RVVSIERIEELAEQ--ARRNLETLGYENVTVRHGDGSKGWP-EE 136 (209)
T ss_pred CCCeEEEEC-CCc----hHHHH--HHHHHh--C---eEEEEEEcHHHHHH--HHHHHHHcCCCceEEEECCcccCCC-CC
Confidence 789999886 342 66655 443332 3 99999987766432 2335999999 677776 7776654 44
Q ss_pred CCcCEEEEccee----------eecCCceecccc
Q 018280 246 GRVSAVIVGADR----------VAANGDTANKIG 269 (358)
Q Consensus 246 ~~vd~VivGAd~----------i~~nG~v~nkiG 269 (358)
...|.+++.|-+ .-.+|-++-.+|
T Consensus 137 aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 778999988632 334565666666
No 200
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=27.01 E-value=1.7e+02 Score=29.59 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=39.2
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC--cchHHHHHHHHhCCCCe-------EEEcchHHHH
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN--QGSRLTAFELVHDRIPA-------TLIADSAAAA 241 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~--qG~rlta~eL~~~GI~v-------tlI~Dsa~~~ 241 (358)
+||..+. | -.+..+++.|++.|. +|+++.+.|.. .+.+ +...-+.+ .|..-..+-.
T Consensus 4 ~iLi~g~-g-------~~a~~i~~aa~~~G~--~vv~~~~~~d~~a~~~~-----~ad~~~~~~~~~~~~~y~d~~~l~~ 68 (451)
T PRK08591 4 KILIANR-G-------EIALRIIRACKELGI--KTVAVHSTADRDALHVQ-----LADEAVCIGPAPSKKSYLNIPAIIS 68 (451)
T ss_pred eEEEECC-C-------HHHHHHHHHHHHcCC--eEEEEcChhhccCCCHh-----HCCEEEEeCCCCcccccCCHHHHHH
Confidence 5666643 2 245778899988775 45555433322 2322 22211110 1111123333
Q ss_pred hhhcCCcCEEEEcceeeecCC
Q 018280 242 LMKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG 262 (358)
+-++.++|.|+-|.+-...++
T Consensus 69 ~a~~~~id~I~p~~~~~~e~~ 89 (451)
T PRK08591 69 AAEITGADAIHPGYGFLSENA 89 (451)
T ss_pred HHHHhCCCEEEECCCccccCH
Confidence 434578999998876555554
No 201
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=26.96 E-value=5.8e+02 Score=25.43 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=37.2
Q ss_pred EEEEecCCCCCcc-hHHHHHHHHhCCCCeEEEc--c-hHHHHhhhcCCcCEEEEcceeeecCCceeccccc----HHHHH
Q 018280 204 RAYCSETRPFNQG-SRLTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTANKIGT----YSLAL 275 (358)
Q Consensus 204 ~V~v~EsrP~~qG-~rlta~eL~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT----~~lA~ 275 (358)
+|++.+ |.+.| .++....+...|+++.++. | ..+...+ +++.++|++- ..-|..|+ ..++-
T Consensus 93 ~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l-~~~tklV~l~--------sP~NPtG~v~di~~I~~ 161 (386)
T PRK08045 93 LLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL-AEKPKLVLVE--------SPSNPLLRVVDIAKICH 161 (386)
T ss_pred EEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhc-ccCCeEEEEE--------CCCCCCCEecCHHHHHH
Confidence 555543 55654 2332322334566777763 1 1222233 2455556552 23344443 35777
Q ss_pred HHHhcCCeEEE
Q 018280 276 CAKFHNILFYV 286 (358)
Q Consensus 276 ~Ak~~~iPvyV 286 (358)
+|+.+|++++|
T Consensus 162 ia~~~g~~viv 172 (386)
T PRK08045 162 LAREAGAVSVV 172 (386)
T ss_pred HHHHcCCEEEE
Confidence 88999988766
No 202
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=26.86 E-value=3.4e+02 Score=26.25 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=41.8
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHHhC-CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 199 EGVLERAYCSETRPFNQGSRLTAFELVHD-RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~eL~~~-GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
+..+.++++.-..|... .++ ...+.+. |+++.++.+ .+..++ ..+|.+++.+ |+..+ =|
T Consensus 217 ~~~~~~~ii~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~-~~~~~~--~~aDl~v~~s-------------G~~~l--Ea 276 (380)
T PRK00025 217 RYPDLRFVLPLVNPKRR-EQI-EEALAEYAGLEVTLLDG-QKREAM--AAADAALAAS-------------GTVTL--EL 276 (380)
T ss_pred hCCCeEEEEecCChhhH-HHH-HHHHhhcCCCCeEEEcc-cHHHHH--HhCCEEEECc-------------cHHHH--HH
Confidence 33456655542223221 222 2334555 788777654 566777 8999998842 55444 45
Q ss_pred HhcCCeEEEec
Q 018280 278 KFHNILFYVAA 288 (358)
Q Consensus 278 k~~~iPvyV~a 288 (358)
-.+|+|+++.-
T Consensus 277 ~a~G~PvI~~~ 287 (380)
T PRK00025 277 ALLKVPMVVGY 287 (380)
T ss_pred HHhCCCEEEEE
Confidence 77899999873
No 203
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=26.84 E-value=21 Score=33.82 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=40.3
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc----chHHH---HhhhcCCcCEEEEcceeeec-CCceecccccHH
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----DSAAA---ALMKDGRVSAVIVGADRVAA-NGDTANKIGTYS 272 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----Dsa~~---~~m~~~~vd~VivGAd~i~~-nG~v~nkiGT~~ 272 (358)
++.-|+..+.--...|.++ ...|.+.|+++..+. +.... .+. ..+. -.++|.|.. -|+.+|.+.=|
T Consensus 20 ~~~lvv~d~~t~~~~g~~v-~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~d~ii~vGgG~i~D~~K~- 93 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKV-EESLKSAGIEVAVIEEFVGDADEDEVEKLV--EALR--PKDADLIIGVGGGTIIDIAKY- 93 (250)
T ss_dssp SEEEEEEETTHHHHHHHHH-HHHHHTTT-EEEEEE-EE---BHHHHHHHH--TTS----TT--EEEEEESHHHHHHHHH-
T ss_pred CcEEEEEcCCHHHHHHHHH-HHHHHHcCCeEEEEecCCCCCCHHHHHHHH--HHhc--ccCCCEEEEeCCcHHHHHHHH-
Confidence 3444444444333346655 456888888887553 22222 222 1110 013333333 67777776554
Q ss_pred HHHHHHhcCCeEEEeccCcccc
Q 018280 273 LALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 273 lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
+|.+.|+||+.+...-..|
T Consensus 94 ---~A~~~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 94 ---AAFELGIPFISVPTAASHD 112 (250)
T ss_dssp ---HHHHHT--EEEEES--SSG
T ss_pred ---HHHhcCCCEEEeccccccc
Confidence 5888899999885444433
No 204
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=26.77 E-value=5.2e+02 Score=25.76 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=24.6
Q ss_pred eecccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 264 TANKIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
-.|-+||..+--++++||+|-+|-+.+.+
T Consensus 102 ~nNi~gtlnlLe~~~~~~~~~~V~sssat 130 (343)
T KOG1371|consen 102 HNNIAGTLNLLEVMKAHNVKALVFSSSAT 130 (343)
T ss_pred ehhhhhHHHHHHHHHHcCCceEEEeccee
Confidence 35889999999999999999999776655
No 205
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.67 E-value=1.5e+02 Score=24.73 Aligned_cols=72 Identities=21% Similarity=0.134 Sum_probs=43.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.+.++|..+.. +++..++..+.+.|.. +|++.- |-......| +.++ .+.++.+++-+.....+ .+
T Consensus 11 ~~~~vlviGaG--------g~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l-~~~~--~~~~~~~~~~~~~~~~~--~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAG--------GAARAVAAALAALGAK-EITIVN-RTPERAEAL-AEEF--GGVNIEAIPLEDLEEAL--QE 75 (135)
T ss_dssp TTSEEEEESSS--------HHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHH-HHHH--TGCSEEEEEGGGHCHHH--HT
T ss_pred CCCEEEEECCH--------HHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHH-HHHc--CccccceeeHHHHHHHH--hh
Confidence 46789998753 5677788888877754 333332 433223333 3344 35566676666666667 78
Q ss_pred cCEEEEc
Q 018280 248 VSAVIVG 254 (358)
Q Consensus 248 vd~VivG 254 (358)
+|.||..
T Consensus 76 ~DivI~a 82 (135)
T PF01488_consen 76 ADIVINA 82 (135)
T ss_dssp ESEEEE-
T ss_pred CCeEEEe
Confidence 9987654
No 206
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.53 E-value=1e+02 Score=28.35 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=56.5
Q ss_pred ecCCCcccccccc-cHHHHHHHHHHCCC-----eeEEEEecCCCCCcch---HHHHHHHHhCCCCeEEEcchHHH-----
Q 018280 175 HCNTGSLATAGYG-TALGVIRALHSEGV-----LERAYCSETRPFNQGS---RLTAFELVHDRIPATLIADSAAA----- 240 (358)
Q Consensus 175 ~~~sg~lat~g~~-ta~~~l~~a~~~g~-----~~~V~v~EsrP~~qG~---rlta~eL~~~GI~vtlI~Dsa~~----- 240 (358)
.|+++++...|.. |+..++..+.+... .--|.+.=+.|..|-. .+ .+.+.+.||.+.+-|.....
T Consensus 6 ~C~~~a~~~~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l-~~~~k~~gi~~~leTnG~~~~~~~~ 84 (213)
T PRK10076 6 ECPSGAFERIGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF-LQRLRLWGVSCAIETAGDAPASKLL 84 (213)
T ss_pred hchhhHHHhcCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHH-HHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4777777776653 67778877765311 1258888999999863 33 55678899999998877554
Q ss_pred HhhhcCCcCEEEEcceee
Q 018280 241 ALMKDGRVSAVIVGADRV 258 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i 258 (358)
.++ +-+|.+++---.+
T Consensus 85 ~l~--~~~D~~l~DiK~~ 100 (213)
T PRK10076 85 PLA--KLCDEVLFDLKIM 100 (213)
T ss_pred HHH--HhcCEEEEeeccC
Confidence 466 7899887754443
No 207
>PRK05414 urocanate hydratase; Provisional
Probab=26.50 E-value=4.8e+02 Score=27.59 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHH
Q 018280 85 DAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKA 121 (358)
Q Consensus 85 el~~~l~~~~~~L~~aRPtav~-l~nai~~~~~~i~~~ 121 (358)
++.+.|+.+.+...+-+|.++. ++|+.+.+.+.+++.
T Consensus 218 ~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~ 255 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRG 255 (556)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcC
Confidence 4555566666667788999986 899999888877765
No 208
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=26.47 E-value=2.4e+02 Score=27.86 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcc--eeeecCC--
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA--DRVAANG-- 262 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGA--d~i~~nG-- 262 (358)
..+...+.+|.++|.+.-|+++|.-|...+.++- ++.+..-.+.+|==|..+.+- +.. ..+|. ..++.-|
T Consensus 99 ~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~--~~~~~~~g~rliGPNc~Gii~--p~~--~~~gi~p~~~~~~G~V 172 (317)
T PTZ00187 99 PHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVK--HALLSQNKTRLIGPNCPGIIK--PGE--CKIGIMPGHIHKKGKI 172 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHH--HHHhhcCCCEEECCCCceEEc--chh--hccccCCcCCCCCCCE
Confidence 4567788899999999999999999998877663 343322334566666655433 221 11221 1133446
Q ss_pred ceecccccHHHHHH--HHhcCCeEEEe
Q 018280 263 DTANKIGTYSLALC--AKFHNILFYVA 287 (358)
Q Consensus 263 ~v~nkiGT~~lA~~--Ak~~~iPvyV~ 287 (358)
+++++.||+...++ +...|+-|--+
T Consensus 173 giVSqSGtl~~ei~~~~~~~GlG~S~~ 199 (317)
T PTZ00187 173 GIVSRSGTLTYEAVAQTTAVGLGQSTC 199 (317)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 46999997666554 66667666543
No 209
>PRK04056 Maf-like protein; Reviewed
Probab=26.47 E-value=4.2e+02 Score=23.73 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=47.4
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeee-cCCceecccccHHHH
Q 018280 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~-~nG~v~nkiGT~~lA 274 (358)
.|..|.|+. .|+.+..+...-.+..|++.+- -.+.++..-+.+++|||.|. -||.++.|=.+..-|
T Consensus 18 ~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA 87 (180)
T PRK04056 18 AGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKL----------EQFLKKYGNECNLLVADSVVSCGNKILRKAKDKEEA 87 (180)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCCEEEEeCEEEEECCEEecCCCCHHHH
Confidence 478898874 3654433322222444554321 11221112246999999987 599999999998766
Q ss_pred --HHHHhcCCeEEEe
Q 018280 275 --LCAKFHNILFYVA 287 (358)
Q Consensus 275 --~~Ak~~~iPvyV~ 287 (358)
++-...|.+..|.
T Consensus 88 ~~~L~~lsg~~h~V~ 102 (180)
T PRK04056 88 REMLKLQSGNEISVL 102 (180)
T ss_pred HHHHHHHCCCcEEEE
Confidence 4666667666554
No 210
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.47 E-value=1.9e+02 Score=28.54 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=41.5
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc--hHHHHHHHHhCCCCeEEEcchHHHH
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG--SRLTAFELVHDRIPATLIADSAAAA 241 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG--~rlta~eL~~~GI~vtlI~Dsa~~~ 241 (358)
..+|.|||+- ...+...++.+++.|....+.+..+-..... .++ ++.+.+.|.++.+|+|++-..
T Consensus 103 ~iri~~~~~e-------~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~-a~~~~~~Ga~~i~i~DT~G~~ 169 (333)
T TIGR03217 103 TVRVATHCTE-------ADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQ-AKLMESYGADCVYIVDSAGAM 169 (333)
T ss_pred EEEEEeccch-------HHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHH-HHHHHhcCCCEEEEccCCCCC
Confidence 3557788752 1245667788888887766666665433322 122 455677899999999987543
No 211
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.23 E-value=5.1e+02 Score=27.34 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHH
Q 018280 84 ADAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKA 121 (358)
Q Consensus 84 ~el~~~l~~~~~~L~~aRPtav~-l~nai~~~~~~i~~~ 121 (358)
.++.+.|+.+-+...+-+|.++. ++|+.+.+.+.+++.
T Consensus 208 ~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~ 246 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRG 246 (545)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcC
Confidence 34555666666677788999986 899999888887754
No 212
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=26.14 E-value=5.8e+02 Score=24.34 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=34.8
Q ss_pred HHHhCCCCeEEEcc--------hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIPATLIAD--------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~vtlI~D--------sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+...|.+++.++. ..+...+.+.+..+|++- ..-...|.+.. --.++-+|+++|+++++=
T Consensus 92 ~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~-~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 92 MAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT-HNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred HHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEe-ccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 35567888777641 233334433366666553 22233554332 234777889999999874
No 213
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=26.13 E-value=3.7e+02 Score=26.06 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCC--ce
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG--DT 264 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG--~v 264 (358)
..+...++.+.++|.+.-|++.+.-+..+..+| .....+.|+ .++==|.+|.+- ...............-| ++
T Consensus 76 ~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l-~~~a~~~gi--rvlGPNc~Gi~~--~~~~~~~~~~~~~~~~G~val 150 (291)
T PRK05678 76 PFAADAILEAIDAGIDLIVCITEGIPVLDMLEV-KAYLERKKT--RLIGPNCPGIIT--PGECKIGIMPGHIHKKGRVGV 150 (291)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEECCCCCcccc--cccceeeecCCCCCCCCCEEE
Confidence 467889999999999999999998875444455 333555665 445444455433 22222222222223356 46
Q ss_pred ecccccHHHHHH--HHhcCCeEE
Q 018280 265 ANKIGTYSLALC--AKFHNILFY 285 (358)
Q Consensus 265 ~nkiGT~~lA~~--Ak~~~iPvy 285 (358)
+...|+...+++ ++..|+-|-
T Consensus 151 iSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 151 VSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred EeccHHHHHHHHHHHHHcCCCeE
Confidence 899999888876 777888775
No 214
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.94 E-value=2.7e+02 Score=28.25 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=44.7
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEc--c-hHHHHhhhcCCcCEEEEcceee-ecCCceec
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRV-AANGDTAN 266 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~i-~~nG~v~n 266 (358)
++..+.+.|. +|++.+ |.+.|.. +.+..+...|+++.++. | ..+...++ ++..+|++ +.+ -..|.+..
T Consensus 89 al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~-~~tklV~l--esp~NPtG~v~d 161 (425)
T PRK06084 89 AIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALID-ERTKAVFC--ESIGNPAGNIID 161 (425)
T ss_pred HHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhc-cCCcEEEE--eCCCCCCCeecC
Confidence 4444444453 455543 3443332 22222344688887764 2 23333442 45666665 222 23454444
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 018280 267 KIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 267 kiGT~~lA~~Ak~~~iPvyV 286 (358)
-..++-+||+||++++|
T Consensus 162 ---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 162 ---IQALADAAHRHGVPLIV 178 (425)
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 25677789999998876
No 215
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=25.73 E-value=1.5e+02 Score=30.48 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCC-CC-eEEEcchHHHHhhhcCCcCEEEEcceeeecCC
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR-IP-ATLIADSAAAALMKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~G-I~-vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG 262 (358)
.+..+++.+++.|....++..+..+...+.++ |.+....| .+ -.|.....+-.+.++.++|.|+-|..-...|.
T Consensus 13 ia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~-aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~ 88 (472)
T PRK07178 13 IAVRIVRACAEMGIRSVAIYSEADRHALHVKR-ADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSENA 88 (472)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCccCCccHhh-CCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccCH
Confidence 46788999998886555444443333233322 21111011 01 11222234445555678999998864444453
No 216
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=25.68 E-value=3.9e+02 Score=26.84 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=40.2
Q ss_pred eEEEEecCCCCCcchHHHHHHH-HhCCCCeEEEcch-------HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH
Q 018280 203 ERAYCSETRPFNQGSRLTAFEL-VHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL-~~~GI~vtlI~Ds-------a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
-+|++.+ |.+....-....+ ...|+++..++-. .+-..+ .++...|++.. - ...|. ++. --.++
T Consensus 155 ~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i-~~~t~~v~l~~-p-n~tG~-v~~--l~~I~ 226 (447)
T PRK00451 155 KKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAV-DDDTAAVVVQY-P-NFFGV-IED--LEEIA 226 (447)
T ss_pred CEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhc-CCCeEEEEEEC-C-CCCCe-eCC--HHHHH
Confidence 4677754 4443222212222 2468888887532 122223 24455555543 2 33443 333 23478
Q ss_pred HHHHhcCCeEEE
Q 018280 275 LCAKFHNILFYV 286 (358)
Q Consensus 275 ~~Ak~~~iPvyV 286 (358)
-+||++|++|+|
T Consensus 227 ~~a~~~~~~~iv 238 (447)
T PRK00451 227 EIAHAGGALFIV 238 (447)
T ss_pred HHHHHCCCEEEE
Confidence 899999999988
No 217
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=25.62 E-value=4.8e+02 Score=23.41 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHhC--CCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 221 AFELVHD--RIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 221 a~eL~~~--GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+..|.+. .++++.+.. ...-.++ .++|.||...|..- --+.+.-.|+.+++||+.+.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~--~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLI--NNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHH--hCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 4455543 355544432 2234456 78999888776542 12346678999999999865
No 218
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=25.58 E-value=4.8e+02 Score=25.44 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=41.1
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcc---ee-----eecCCceecccccHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA---DR-----VAANGDTANKIGTYS 272 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGA---d~-----i~~nG~v~nkiGT~~ 272 (358)
.-+|++..-.|.. .+..+.++.+.|+++....|.. -++ .++|.|+... +- .+..|..+|-+|++.
T Consensus 153 ~~~v~V~~r~~~~--~~~~~~~~~~~g~~v~~~~~~~--eav--~~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 153 LEEVSVYCRTPST--REKFALRASDYEVPVRAATDPR--EAV--EGCDILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred CCEEEEECCCHHH--HHHHHHHHHhhCCcEEEeCCHH--HHh--ccCCEEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 3455555433322 2233566777888877765544 445 7999998755 32 346788999999863
No 219
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.54 E-value=1.8e+02 Score=28.03 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHHhCCCCeEEEcc---------hHHHHhhhcCCcCEEEEcc
Q 018280 187 GTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~eL~~~GI~vtlI~D---------sa~~~~m~~~~vd~VivGA 255 (358)
|+-+..|..+.+.|. ..+|.++= .+|..++ + ..+.|||+.+++. ..+...+++.++|.+++..
T Consensus 100 gsnl~al~~~~~~~~~~~~i~~visn~~~~~~--l----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 100 DHCLGDLLWRWRSGELPVEIAAVISNHDDLRS--L----VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHH--H----HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEec
Confidence 666666655655554 34443332 3443222 1 4567999998652 2445667778899888765
Q ss_pred -eeee
Q 018280 256 -DRVA 259 (358)
Q Consensus 256 -d~i~ 259 (358)
-+|+
T Consensus 174 y~~il 178 (286)
T PRK06027 174 YMQIL 178 (286)
T ss_pred chhhc
Confidence 4444
No 220
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.48 E-value=1.7e+02 Score=28.62 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=67.2
Q ss_pred EEEEecCCCcccccc-------cccHHHHHHHHHHCCCeeEEEEecCCCCCc--chHHHHHH---HHhCCCCeEEEcchH
Q 018280 171 SVLTHCNTGSLATAG-------YGTALGVIRALHSEGVLERAYCSETRPFNQ--GSRLTAFE---LVHDRIPATLIADSA 238 (358)
Q Consensus 171 ~ILT~~~sg~lat~g-------~~ta~~~l~~a~~~g~~~~V~v~EsrP~~q--G~rlta~e---L~~~GI~vtlI~Dsa 238 (358)
+|-..-..|++...+ +......|+.++...+.--|.+.=..|... ++...+.+ |.+.| ||++....+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~~~ 138 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVGGY 138 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEECCe
Confidence 344444457777655 556777888888766544555555567764 33443443 55678 999888754
Q ss_pred H---HHhhhcCCcCEEEEcceeeecC-Cceecccc----cHHHHHHHHhcCCeEEEe-ccCcc
Q 018280 239 A---AALMKDGRVSAVIVGADRVAAN-GDTANKIG----TYSLALCAKFHNILFYVA-APLTS 292 (358)
Q Consensus 239 ~---~~~m~~~~vd~VivGAd~i~~n-G~v~nkiG----T~~lA~~Ak~~~iPvyV~-a~~~k 292 (358)
+ ||+| =++||.|++| .+++-.|| ...+.-+.+.+||-+.+. +..+|
T Consensus 139 AASGGY~I--------A~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k 193 (317)
T COG0616 139 AASGGYYI--------ALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYK 193 (317)
T ss_pred ecchhhhh--------hccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccc
Confidence 4 3555 4555555552 33333333 455667788888887754 33344
No 221
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=25.42 E-value=1e+02 Score=27.54 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=7.8
Q ss_pred CCcEEEEecCCC
Q 018280 168 SKFSVLTHCNTG 179 (358)
Q Consensus 168 ~~~~ILT~~~sg 179 (358)
+|.+|+.||+.|
T Consensus 132 ~g~~V~vHC~GG 143 (168)
T PF05706_consen 132 NGRKVLVHCRGG 143 (168)
T ss_dssp TT--EEEE-SSS
T ss_pred cCCEEEEECCCC
Confidence 789999999975
No 222
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=25.20 E-value=4.7e+02 Score=27.65 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHhhc-------------------cCCHHHHHHHHHHHHHHHH
Q 018280 84 ADAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAAAT-------------------ASEANSVFQAYIEAAEIML 143 (358)
Q Consensus 84 ~el~~~l~~~~~~L~~aRPtav~-l~nai~~~~~~i~~~~~~-------------------~~~~~~~~~~l~~~~~~~~ 143 (358)
.++.+.++.+.+...+-+|.++. ++|+.+.+.+.+++.... ..+.++..+...+.=+.|.
T Consensus 207 ~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~~~~ 286 (546)
T PF01175_consen 207 DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPEEFK 286 (546)
T ss_dssp SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHHHHH
T ss_pred CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHHHHH
Confidence 34556677777778889999986 899999988877665210 1234555444433333333
Q ss_pred HHHHHHHHHHHHHHHH--HhHhhhcCCCcEEEEecCCCcccc--cc------c-ccHHHHHHHHHHCCC-eeEEEEecCC
Q 018280 144 KDDVATNKAIGSYGAS--FLQNQLKNSKFSVLTHCNTGSLAT--AG------Y-GTALGVIRALHSEGV-LERAYCSETR 211 (358)
Q Consensus 144 ~e~~~a~~~I~~~~~~--~i~~~~~~~~~~ILT~~~sg~lat--~g------~-~ta~~~l~~a~~~g~-~~~V~v~Esr 211 (358)
+. +.+.|..|... .+.+ .|..+.-|+|+=-+.. +| | |-|..+++-.+..|+ .|+-+|+=..
T Consensus 287 ~~---v~~Sl~rhv~Am~~~~~----~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGd 359 (546)
T PF01175_consen 287 ER---VQESLARHVEAMLELQD----RGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGD 359 (546)
T ss_dssp HH---HHHHHHHHHHHHHHHHH----TT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--
T ss_pred HH---HHHHHHHHHHHHHHHHH----CCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCC
Confidence 22 23333333222 2222 5677777776400000 01 1 224455666666777 6888877666
Q ss_pred CC
Q 018280 212 PF 213 (358)
Q Consensus 212 P~ 213 (358)
|.
T Consensus 360 pe 361 (546)
T PF01175_consen 360 PE 361 (546)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 223
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=25.19 E-value=8e+02 Score=25.64 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=40.1
Q ss_pred HHHHhCC-CCeEEEcchHHHHhhhc---CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 222 FELVHDR-IPATLIADSAAAALMKD---GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 222 ~eL~~~G-I~vtlI~Dsa~~~~m~~---~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+++.+.| +.+.-..-+.+...++. .++|.+++=+...=++|.+.=- ++......+-.....|+|-
T Consensus 87 Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg-~s~~~~~~aa~aAk~VIvE 155 (485)
T TIGR03458 87 RKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPT-SSVGNNPTFLELADKVIVE 155 (485)
T ss_pred HHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEe-cccchHHHHHHhCCEEEEE
Confidence 4566666 56666667778877753 2799999999888889866333 3332333333334445543
No 224
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.12 E-value=5.8e+02 Score=24.00 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=33.4
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEc
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (358)
.-+++.-++-..+-.++ +..+.+.|+++..|+|+.-+.+- +.+|.++.-
T Consensus 190 l~I~iS~sG~t~~~~~~-~~~ak~~g~~ii~IT~~~~s~la--~~ad~~l~~ 238 (292)
T PRK11337 190 VVLVVSHSGRTSDVIEA-VELAKKNGAKIICITNSYHSPIA--KLADYVICS 238 (292)
T ss_pred EEEEEeCCCCCHHHHHH-HHHHHHCCCeEEEEeCCCCChhH--HhCCEEEEc
Confidence 33444444433333333 55678899999999998888777 678888864
No 225
>PRK05968 hypothetical protein; Provisional
Probab=25.08 E-value=6.9e+02 Score=24.83 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=43.7
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 193 IRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
+....+.|. +|++.+ |.+.+. ++....+...|+++.++.- ..+-..+ ++..+|++- | ..|..
T Consensus 95 l~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i--~~tklV~ie------~--pt~~~ 160 (389)
T PRK05968 95 VLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL--PGAKLLYLE------S--PTSWV 160 (389)
T ss_pred HHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc--ccCCEEEEE------C--CCCCC
Confidence 333334443 566554 444332 2223346678999988742 2233334 455555542 1 33444
Q ss_pred cc----HHHHHHHHhcCCeEEEe
Q 018280 269 GT----YSLALCAKFHNILFYVA 287 (358)
Q Consensus 269 GT----~~lA~~Ak~~~iPvyV~ 287 (358)
+. ..++-+||+||++++|=
T Consensus 161 ~~~~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 161 FELQDVAALAALAKRHGVVTMID 183 (389)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEE
Confidence 43 24577889999998873
No 226
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=25.08 E-value=1.5e+02 Score=28.12 Aligned_cols=39 Identities=8% Similarity=-0.134 Sum_probs=18.9
Q ss_pred HHHHHhCCCCeEEEcchH--HHHhhhcCCcCEEEEcceeee
Q 018280 221 AFELVHDRIPATLIADSA--AAALMKDGRVSAVIVGADRVA 259 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa--~~~~m~~~~vd~VivGAd~i~ 259 (358)
++.|.+.|+++.++.... ...+-+..++|.|+.-++...
T Consensus 25 ~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ 65 (299)
T PRK14571 25 KKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTF 65 (299)
T ss_pred HHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCC
Confidence 344555555555553221 111111156788887776553
No 227
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=24.87 E-value=1.3e+02 Score=26.57 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=14.5
Q ss_pred CCcEEEEecCCCcccccccccHHH
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALG 191 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~ 191 (358)
.|..|+.||-.|. +.++|+..
T Consensus 104 ~g~kVvVHC~~Gi---gRSgtvia 124 (180)
T COG2453 104 KGKKVVVHCQGGI---GRSGTVIA 124 (180)
T ss_pred cCCeEEEEcCCCC---chHHHHHH
Confidence 6779999999763 34455554
No 228
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.73 E-value=3.5e+02 Score=27.45 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=53.1
Q ss_pred ccHH-HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCcee
Q 018280 187 GTAL-GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 187 ~ta~-~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~ 265 (358)
|.+. .+++.+.+....+++++-.+. -||.. ++.++.+ ++..+-..+ +|.+|+| ..|+-+
T Consensus 146 gAa~~D~~~~~~~r~p~~~~~~~~~~--vQG~~-A~~~i~~-----------al~~~~~~~-~Dviii~-----RGGGS~ 205 (438)
T PRK00286 146 GAAIRDILTVLRRRFPLVEVIIYPTL--VQGEG-AAASIVA-----------AIERANARG-EDVLIVA-----RGGGSL 205 (438)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEecCc--CcCcc-HHHHHHH-----------HHHHhcCCC-CCEEEEe-----cCCCCH
Confidence 4454 477888776666788887776 45543 2444443 233322113 7888876 667654
Q ss_pred ccc---ccHHHHHHHHhcCCeEEEecc
Q 018280 266 NKI---GTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 266 nki---GT~~lA~~Ak~~~iPvyV~a~ 289 (358)
-.. -.+.+|-+-....+||+..-.
T Consensus 206 eDL~~Fn~e~v~~ai~~~~~Pvis~IG 232 (438)
T PRK00286 206 EDLWAFNDEAVARAIAASRIPVISAVG 232 (438)
T ss_pred HHhhccCcHHHHHHHHcCCCCEEEecc
Confidence 444 567888888889999998754
No 229
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=24.67 E-value=95 Score=33.80 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHHhCCCCeEE
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATL 233 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~eL~~~GI~vtl 233 (358)
|.+...|..|.++||+.+|+|-=-.=..++..+ .+++|.++|+.|.+
T Consensus 371 s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viy 418 (672)
T TIGR03705 371 SPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVY 418 (672)
T ss_pred cHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEE
Confidence 456677777777888888887611111122211 25578888888777
No 230
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=24.49 E-value=1.5e+02 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=32.5
Q ss_pred HHHHCCC---eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhh
Q 018280 195 ALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (358)
Q Consensus 195 ~a~~~g~---~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m 243 (358)
.|...|| .+.|+|++ ||.+|. | ..++++.|..+.+|+|.-++..+
T Consensus 145 vA~algk~v~dltV~vLd-RpRH~~--l-I~eiR~~GarI~Li~DGDVa~ai 192 (321)
T PRK12388 145 VARALGKPLDKLRMVTLD-KPRLSA--A-IEEATQLGVKVFALPDGDVAASV 192 (321)
T ss_pred HHHHcCCChhHeEEEEEc-CchHHH--H-HHHHHHcCCeEEEeccccHHHHH
Confidence 3444555 45666665 999986 4 56899999999999997665433
No 231
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.48 E-value=2e+02 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=26.0
Q ss_pred hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 237 sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.+.-.+ .++|.|++|-..=+.=+ .+--.+..+||||-|.
T Consensus 40 ~e~~~~~--~~~DvvLlGPQv~y~~~---------~~~~~~~~~giPV~vI 79 (102)
T COG1440 40 TELSEYI--DNADVVLLGPQVRYMLK---------QLKEAAEEKGIPVEVI 79 (102)
T ss_pred hHHHHhh--hcCCEEEEChHHHHHHH---------HHHHHhcccCCCeEEe
Confidence 3344556 68999999975433221 2445667788999886
No 232
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=24.27 E-value=1.3e+02 Score=27.59 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCc---chH---H-HHHHHHhCCCCeEEE-cchHHHHhhhcCCcCEEEEc---ceee
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQ---GSR---L-TAFELVHDRIPATLI-ADSAAAALMKDGRVSAVIVG---ADRV 258 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~q---G~r---l-ta~eL~~~GI~vtlI-~Dsa~~~~m~~~~vd~VivG---Ad~i 258 (358)
..+++.+.+.|...+|+++++.=.+- |.. + +-..+. |.++..- .+...... .+..|.+++. |+.+
T Consensus 23 ~~lir~L~k~G~~V~vv~T~aA~~~~~~~~~~~~~~~~l~~ls--~~~v~~~~~~~~~isl--s~~aD~mvIAPaSanTL 98 (196)
T PRK08305 23 MPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKKIEEIT--GNKVINTIVEAEPLGP--KKLLDCMVIAPCTGNTM 98 (196)
T ss_pred HHHHHHHHhCcCEEEEEECHhHHHHhhhcCChHHHHHHHHHHH--CCCcEEecCCCccCcc--ccccCEEEEEeCCHhHH
Confidence 45678888888888888887642110 100 0 011232 3444211 12111111 2567877765 2333
Q ss_pred ecCCceecccccHHHHHHHHh---cCCeEEEe
Q 018280 259 AANGDTANKIGTYSLALCAKF---HNILFYVA 287 (358)
Q Consensus 259 ~~nG~v~nkiGT~~lA~~Ak~---~~iPvyV~ 287 (358)
. .++|-+..-.+..+|.. .++|++++
T Consensus 99 A---KiA~GiaDnll~~aa~a~lke~~Pvvla 127 (196)
T PRK08305 99 A---KLANAITDSPVLMAAKATLRNQRPVVLA 127 (196)
T ss_pred H---HHHccccCcHHHHHHHHHhcCCCCEEEE
Confidence 2 23333444456666665 48999876
No 233
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=24.12 E-value=1.7e+02 Score=29.26 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=67.9
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH---HHHHHHh-C-CCCeEEEcchHH--HHhhhcCCcCEEEEccee
Q 018280 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL---TAFELVH-D-RIPATLIADSAA--AALMKDGRVSAVIVGADR 257 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rl---ta~eL~~-~-GI~vtlI~Dsa~--~~~m~~~~vd~VivGAd~ 257 (358)
.+-++.++++.|.+.+...-+=+.++.=..-|... ..+.+++ . .+||.+-.|..- ..++ .-+ =.|-.+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~--~Ai---~~GFtS 99 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQ--RAI---QLGFTS 99 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--HHH---HcCCCE
Confidence 34678889999988776544444443212223332 1333443 4 399999999873 3344 333 348999
Q ss_pred eecCCcee-----------cccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 258 VAANGDTA-----------NKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 258 i~~nG~v~-----------nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
|+-||+-. |--=|-.++-.||.+|++| =+|.-.+
T Consensus 100 VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV--EaELG~i 144 (347)
T TIGR01521 100 VMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV--EGELGCL 144 (347)
T ss_pred EeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE--EEEeeec
Confidence 99999988 8888999999999999985 4455554
No 234
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.08 E-value=2.8e+02 Score=24.03 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 222 FELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 222 ~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
..|...|+++.++.|... ..+ .+=|.+|+-. -.| +.--+..++-.||++|+|++.++..
T Consensus 50 ~~l~~~g~~~~~~~~~~~-~~~--~~~Dv~I~iS----~sG---~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTT-PSI--KKGDLLIAIS----GSG---ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred HHHHhCCCeEEEeCCccc-CCC--CCCCEEEEEe----CCC---CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 345666777777777532 234 4556665432 223 2223556677899999999998654
No 235
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=24.04 E-value=95 Score=28.14 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=46.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCC-----CCcchHHHHHHHHh-CCCCe-EEEcchHHHHhhhcCCcCEEEEcceeeecCCc
Q 018280 191 GVIRALHSEGVLERAYCSETRP-----FNQGSRLTAFELVH-DRIPA-TLIADSAAAALMKDGRVSAVIVGADRVAANGD 263 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP-----~~qG~rlta~eL~~-~GI~v-tlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~ 263 (358)
.+++.+.+.|...+|+++++-= +....+. ...|.. .|.++ +-+.+..... .++..|.+++.--.--.=+.
T Consensus 19 ~ll~~L~~~g~~V~vI~S~~A~~~~~~~g~~~~~-i~~l~~~tg~~v~~~~~~~~~~~--~s~~~D~mVIaPcTanTLAK 95 (187)
T TIGR02852 19 PQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADW-IKKIEEITGRPAINTIVEAEPFG--PKVPLDCMVIAPLTGNSMSK 95 (187)
T ss_pred HHHHHHHhCcCEEEEEEchhHHHHHHHcCChHHH-HHHHHHHHCCCCEEECCCCcccC--CchhhCEEEEEeCCHhHHHH
Confidence 5677888888888888876531 1100011 112222 23333 2232211111 12567877665222111122
Q ss_pred eecccccHHHHHHHHhc---CCeEEEe
Q 018280 264 TANKIGTYSLALCAKFH---NILFYVA 287 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~---~iPvyV~ 287 (358)
++|-+.--.+.++|+.+ +.|++++
T Consensus 96 iA~GiaDnlv~~aa~a~Lke~rPlvla 122 (187)
T TIGR02852 96 LANAMTDSPVLMAAKATLRNNKPVVLA 122 (187)
T ss_pred HHccccCcHHHHHHHHHhcCCCCEEEE
Confidence 33334444567777766 8999886
No 236
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.83 E-value=3.5e+02 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=27.5
Q ss_pred EEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 250 ~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
.+++|. -.|.|-...+|..+++|.+.+.|...+.
T Consensus 61 ~~liGS-----------SlGG~~A~~La~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 61 VVLIGS-----------SLGGFYATYLAERYGLPAVLINPAVRPY 94 (187)
T ss_pred eEEEEE-----------ChHHHHHHHHHHHhCCCEEEEcCCCCHH
Confidence 677774 4677888899999999999999887654
No 237
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.62 E-value=5.9e+02 Score=24.06 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred ccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCC----eEEEc---chHHHHhhhcCCcCEEEE
Q 018280 181 LATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIA---DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 181 lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~----vtlI~---Dsa~~~~m~~~~vd~Viv 253 (358)
+.|.|+.+.-.+.. ...+.++.+-|+ |..+.... ..+.|+| +-.-. -..=-.+|++.++|.+
T Consensus 133 ~lttG~k~l~~f~~--~~~~~~~~~RvL---P~~~~l~~----~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~l-- 201 (256)
T TIGR00715 133 FLTAGASWLSHFSL--SQDEAVVFVRVL---PYPQALAQ----ALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAV-- 201 (256)
T ss_pred EEecCcchHHHHhh--ccCCceEEEEEC---CCchhhHH----HHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEE--
Q ss_pred cceeeecCCceeccc-ccHHHHHHHHhcCCeEEEe
Q 018280 254 GADRVAANGDTANKI-GTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 254 GAd~i~~nG~v~nki-GT~~lA~~Ak~~~iPvyV~ 287 (358)
|..|.+- . |++.---+|++.|+|++|+
T Consensus 202 ----VtK~SG~---~Gg~~eKi~AA~~lgi~vivI 229 (256)
T TIGR00715 202 ----VTKASGE---QGGELEKVKAAEALGINVIRI 229 (256)
T ss_pred ----EEcCCCC---ccchHHHHHHHHHcCCcEEEE
No 238
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=23.48 E-value=7.7e+02 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=26.8
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN 214 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~ 214 (358)
.|..++-=|+..-.|++ -|.++.+.|.++.++|.++.+|.
T Consensus 153 ~v~v~gGDG~~ydIG~~----~l~ha~~r~~ni~~iv~DNe~Y~ 192 (365)
T cd03377 153 SVWIIGGDGWAYDIGYG----GLDHVLASGENVNILVLDTEVYS 192 (365)
T ss_pred ceEEEecchhhhccchh----hHHHHHHcCCCeEEEEECCcccc
Confidence 45555444544434443 35566677999999999999986
No 239
>PRK06886 hypothetical protein; Validated
Probab=23.40 E-value=2e+02 Score=28.32 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=39.1
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecC----------CCCCcchHHHHHHHHhCCCCeEEEcchH
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSET----------RPFNQGSRLTAFELVHDRIPATLIADSA 238 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~Es----------rP~~qG~rlta~eL~~~GI~vtlI~Dsa 238 (358)
|.++.-||.+ |..-.-..+...+....+.|..+.. +..| -|...|.-- ..+|.+.||+|.+-+|+.
T Consensus 207 grV~~sH~~~--L~~~~~~~~~~~i~~La~agi~Vv~-~P~snl~l~~~~~~~p~~rGv~p-v~eL~~aGV~V~lGtDnv 282 (329)
T PRK06886 207 GRVVAIHGIS--IGAHSKEYRYRLYQKMREADMMVIA-CPMAWIDSNRKEDLMPFHNALTP-ADEMIPEGITVALGTDNI 282 (329)
T ss_pred CCEEEEEecc--ccCcChhhHHHHHHHHHHcCCeEEE-CchhhhhhccccccCcCCCCCCC-HHHHHHCCCeEEEecCCC
Confidence 4678888864 4322222334456666666643322 2222 244455432 578999999999999986
Q ss_pred H
Q 018280 239 A 239 (358)
Q Consensus 239 ~ 239 (358)
.
T Consensus 283 ~ 283 (329)
T PRK06886 283 C 283 (329)
T ss_pred c
Confidence 4
No 240
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=23.33 E-value=66 Score=25.61 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=30.0
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEE
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvy 285 (358)
+.+=..+..||+|+-=++--+.-|...=-.+|+..|+||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 3333445567777665667888899888999999999987
No 241
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=23.27 E-value=2.4e+02 Score=24.68 Aligned_cols=66 Identities=8% Similarity=-0.055 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCeEEEcchHHHHhh-hcCCcCEEEE-cceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 220 TAFELVHDRIPATLIADSAAAALM-KDGRVSAVIV-GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa~~~~m-~~~~vd~Viv-GAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.+..|.+.|+++.+++...-.-.+ .-.++|.||+ |-. |+ .++.+.+...+-+-..++|++-+|=-+
T Consensus 14 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~-----~~-~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 14 LVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGP-----GH-PEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred HHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCC-----CC-cccchhHHHHHHHHhcCCCEEEECHhH
Confidence 356678889988888866543220 1157888776 432 11 122223333332234579999776433
No 242
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.27 E-value=3.7e+02 Score=21.67 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHH
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA 239 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~ 239 (358)
.++.++..++||. ..-+...++.|+++|.+.-++...+ .+ +..-.+.|+++..+++...
T Consensus 43 ~~dl~I~iS~SG~-----t~e~i~~~~~a~~~g~~iI~IT~~~-------~l-~~~~~~~~~~~~~~p~~~~ 101 (119)
T cd05017 43 RKTLVIAVSYSGN-----TEETLSAVEQAKERGAKIVAITSGG-------KL-LEMAREHGVPVIIIPKGLQ 101 (119)
T ss_pred CCCEEEEEECCCC-----CHHHHHHHHHHHHCCCEEEEEeCCc-------hH-HHHHHHcCCcEEECCCCCC
Confidence 5789999998863 1235677888888775433333221 24 3333446888888887653
No 243
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.13 E-value=1.9e+02 Score=29.00 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHHHhCCCCeE-EEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPAT-LIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vt-lI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
....|.+.|+++. .++|.....+-+-++..+++ ++...+.+..-.+.++||+|++.+
T Consensus 172 l~~lL~~~Gi~v~~~~~d~~~~~~~~~~~a~~~~-----------~~~~~~~~~A~~Le~r~giP~~~~ 229 (396)
T cd01979 172 LRRELEQLGIPVVGFLPPRRYTDLPVIGPGTYVL-----------GIQPFLSRTATTLMRRRKCKLLSA 229 (396)
T ss_pred HHHHHHHcCCeEEEEeCCCChHHhhccCcceEEE-----------EeChhHHHHHHHHHHhcCCCcccC
Confidence 3667889999997 88887555443222211111 123334455667889999999875
No 244
>PRK00148 Maf-like protein; Reviewed
Probab=23.10 E-value=4.5e+02 Score=23.84 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeec-CCceecccccHHHH
Q 018280 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~-nG~v~nkiGT~~lA 274 (358)
.|..|.++. .|+.+..+...-.+.+|++.. +-.+.+ ..-+.+++|||.|.. ||-+..|=.+..=|
T Consensus 19 ~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~Il~KP~~~eeA 87 (194)
T PRK00148 19 AGIPPLVVVSHVDEDAIAASSPSELVQALARAK----------AEAVAE-NAPDAVVLGCDSMLLIDGRLLGKPHTPEEA 87 (194)
T ss_pred CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCcEEEECCEEecCCCCHHHH
Confidence 478888773 355443332222244444322 111221 234679999999765 99999999998776
Q ss_pred --HHHHhcCCeEEEe
Q 018280 275 --LCAKFHNILFYVA 287 (358)
Q Consensus 275 --~~Ak~~~iPvyV~ 287 (358)
++-+..|.+..|.
T Consensus 88 ~~~L~~lsG~~h~v~ 102 (194)
T PRK00148 88 IERWQQMSGRTGELY 102 (194)
T ss_pred HHHHHHhCCCCcEEE
Confidence 4666667655543
No 245
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=23.08 E-value=94 Score=27.30 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCC
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPF 213 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~ 213 (358)
--..+.+.|+++|+.++||..+.|-.
T Consensus 108 DFF~Icrka~qqg~sIrVyM~DgR~i 133 (165)
T PF03614_consen 108 DFFSICRKAHQQGKSIRVYMADGREI 133 (165)
T ss_pred hHHHHHHHHHHCCCeEEEEEcCCcEE
Confidence 35678899999999999999998854
No 246
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.03 E-value=3.6e+02 Score=21.53 Aligned_cols=63 Identities=21% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHHHhCC-CCeEEEcchHHHHhhhc-CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 221 AFELVHDR-IPATLIADSAAAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 221 a~eL~~~G-I~vtlI~Dsa~~~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
++.|...| +++..+......+.+.. .+=|.+|+ |...|..-. +...+-.||++|.|+++++..
T Consensus 18 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~----iS~sG~t~e---~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 18 KYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIA----ISQSGETAD---TLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred HHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEE----EeCCcCCHH---HHHHHHHHHHcCCeEEEEECC
Confidence 33455554 77776663333322210 34455543 334554332 666778999999999998754
No 247
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=22.97 E-value=3.4e+02 Score=20.47 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHhCCCCeEEEcch--HHHHhhhcCCcCEEEEcceee
Q 018280 223 ELVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRV 258 (358)
Q Consensus 223 eL~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGAd~i 258 (358)
.+.+.|++++...-. ...... .++|.++++.+-=
T Consensus 23 ~~~~~gi~~~~~~~~~~~~~~~~--~~~D~il~~~~i~ 58 (90)
T PF02302_consen 23 ALKELGIEVEVSAGSILEVEEIA--DDADLILLTPQIA 58 (90)
T ss_dssp HHHHTTECEEEEEEETTTHHHHH--TT-SEEEEEESSG
T ss_pred HHHhccCceEEEEeccccccccc--CCCcEEEEcCccc
Confidence 344555555444433 233334 6789998886543
No 248
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=22.95 E-value=2.7e+02 Score=25.87 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHhhhcCCcCEEEEcceeeec------CCc---eecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 239 AAALMKDGRVSAVIVGADRVAA------NGD---TANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~i~~------nG~---v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+..+++..++|.||--|-.... +-. -.|-.||..++-+|++++++=+|.+.|.
T Consensus 41 l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~ 102 (306)
T PLN02725 41 VEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSS 102 (306)
T ss_pred HHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCce
Confidence 3334444567777765532210 100 1477799999999999998644444443
No 249
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=22.90 E-value=6.6e+02 Score=24.72 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHhC--CCCeEEEc----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 222 FELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 222 ~eL~~~--GI~vtlI~----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
..|.+. .+.++.+. ...+..++ .++|.||.+.|.. ---+.+.-+|..+++|++.++
T Consensus 87 ~~l~~inp~v~v~~~~~~~~~~~~~~~~--~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 87 KRLEEINSDVRVEAIVQDVTAEELEELV--TGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHHHHHCCCcEEEEEeccCCHHHHHHHH--cCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 345543 35554443 22344567 7899999988744 224567788999999998654
No 250
>PRK00884 Maf-like protein; Reviewed
Probab=22.82 E-value=5e+02 Score=23.53 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeee-cCCceecccccHHHH
Q 018280 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~-~nG~v~nkiGT~~lA 274 (358)
.|..|.|+. .|+-+..+...-.+..|++.+- -.+. +..-+.+++|||.|. -||.+..|=.+..-|
T Consensus 20 ~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA----------~~v~-~~~~~~~VI~aDTvV~~~g~ilgKP~~~eeA 88 (194)
T PRK00884 20 LQLPFECAAPEVDETPRPGESPRQLVLRLAQEKA----------QSLA-SRYPDHLIIGSDQVCVLDGEITGKPLTEENA 88 (194)
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHH-hhCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 478888874 4554333322222444444221 1111 123467999999976 599999999999876
Q ss_pred --HHHHhcCCeEEEe
Q 018280 275 --LCAKFHNILFYVA 287 (358)
Q Consensus 275 --~~Ak~~~iPvyV~ 287 (358)
++-+..|.+-.|.
T Consensus 89 ~~~L~~lsG~~h~V~ 103 (194)
T PRK00884 89 RAQLRKASGNIVTFY 103 (194)
T ss_pred HHHHHHHCCCceEEE
Confidence 4667777655554
No 251
>PRK14362 Maf-like protein; Provisional
Probab=22.79 E-value=4.8e+02 Score=23.96 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.2
Q ss_pred cCEEEEcceeee-cCCceecccccHHHH--HHHHhcCCeEEEe
Q 018280 248 VSAVIVGADRVA-ANGDTANKIGTYSLA--LCAKFHNILFYVA 287 (358)
Q Consensus 248 vd~VivGAd~i~-~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~ 287 (358)
-+.+|+|||.|. -||.+..|=.+..-| ++-+..|.+..|.
T Consensus 72 ~~~~VI~ADTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~H~V~ 114 (207)
T PRK14362 72 AGRLVIAADTVVALDGMILGKPADRADALSMLRRLAGRTHEVV 114 (207)
T ss_pred CCCEEEEeCeEEEeCCEEcCCCCCHHHHHHHHHHhCCCceEEE
Confidence 467999999976 599999999998776 4666667665554
No 252
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=22.66 E-value=1.5e+02 Score=28.41 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=47.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccH
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTY 271 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~ 271 (358)
-|+..+++|..+...-.-. -++|+-+.+.|+++.++.|+.....+ +.-|-..+.-|-++ +
T Consensus 6 ~lr~~~~~g~~i~~~tayD-------~~sArl~e~aG~d~i~vGds~~~~~l--G~~Dt~~vtl~em~-----------~ 65 (264)
T PRK00311 6 DLQKMKQEGEKIVMLTAYD-------YPFAKLFDEAGVDVILVGDSLGMVVL--GYDSTLPVTLDDMI-----------Y 65 (264)
T ss_pred HHHHHHhCCCCEEEEeCCC-------HHHHHHHHHcCCCEEEECHHHHHHHc--CCCCCCCcCHHHHH-----------H
Confidence 4666777676554442211 24577678899999999999887777 66665444444332 2
Q ss_pred HHHHHHHhcCCeEEEe
Q 018280 272 SLALCAKFHNILFYVA 287 (358)
Q Consensus 272 ~lA~~Ak~~~iPvyV~ 287 (358)
.+..+++..+.|++++
T Consensus 66 h~~~V~r~~~~p~vva 81 (264)
T PRK00311 66 HTKAVARGAPRALVVA 81 (264)
T ss_pred HHHHHHhcCCCCcEEE
Confidence 2445566677776664
No 253
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.38 E-value=5.1e+02 Score=22.37 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=27.1
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGA 255 (358)
++.+++.|+++..|+++.-+.+- +.+|.++.-.
T Consensus 92 ~~~ak~~g~~ii~IT~~~~s~la--~~ad~~l~~~ 124 (179)
T TIGR03127 92 AKKAKEIGATVAAITTNPESTLG--KLADVVVEIP 124 (179)
T ss_pred HHHHHHCCCeEEEEECCCCCchH--HhCCEEEEeC
Confidence 55678899999999998888887 7888877643
No 254
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.35 E-value=1.1e+02 Score=30.48 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=68.5
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHH---HHHHHh-C-CCCeEEEcchHHH--HhhhcCCcCEEEEcceee
Q 018280 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFELVH-D-RIPATLIADSAAA--ALMKDGRVSAVIVGADRV 258 (358)
Q Consensus 186 ~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlt---a~eL~~-~-GI~vtlI~Dsa~~--~~m~~~~vd~VivGAd~i 258 (358)
+-++.++|+.|.+.+...-+=+.++.=..-|..+. +..+.+ . .+||.+-.|..-. .++ .-+ =.|-.+|
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~--~ai---~~GftSV 102 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQ--RAI---QLGFTSV 102 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--HHH---HcCCCEE
Confidence 45788899999887765444444433222343322 333443 4 3999999998743 233 333 3589999
Q ss_pred ecCCcee-----------cccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 259 AANGDTA-----------NKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 259 ~~nG~v~-----------nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
+-||+-. |--=|..+.-.||.+|++|= +|.-.+
T Consensus 103 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE--aELG~v 146 (347)
T PRK09196 103 MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE--GELGCL 146 (347)
T ss_pred EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE--EEEeec
Confidence 9999998 88899999999999999876 455444
No 255
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=22.35 E-value=3.9e+02 Score=27.47 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE-----cchHHHHhhhcCCcCEEEE-cceeeecCCc
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-----ADSAAAALMKDGRVSAVIV-GADRVAANGD 263 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI-----~Dsa~~~~m~~~~vd~Viv-GAd~i~~nG~ 263 (358)
.++++.+.++|.+.+.+-+ -|..--. .+--...|.++.-+ ....+-....+...|.+|| |+=.++ +|
T Consensus 20 ~gl~~~l~~~g~~v~~~K~--Gpd~iD~---~~~~~~~g~~~~nld~~~~~~~~i~~~~~~~~~d~~vIEG~gGl~-dg- 92 (433)
T PRK13896 20 LATIRALEDAGYAVQPAKA--GPDFIDP---SHHEAVAGRPSRTLDPWLSGEDGMRRNYYRGEGDICVVEGVMGLY-DG- 92 (433)
T ss_pred HHHHHHHHHCCCeeEEEee--CCCCCCH---HHHHHHhCCCcccCChhhCCHHHHHHHHHhhcCCEEEEECCCccc-cC-
Confidence 3456666667765555543 4432111 11112245554321 1111222222345777766 555554 33
Q ss_pred eecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 264 TANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+.+..|=+||..+.||++++...
T Consensus 93 -----~~~s~adla~~l~~PviLVv~~~ 115 (433)
T PRK13896 93 -----DVSSTAMVAEALDLPVVLVVDAK 115 (433)
T ss_pred -----CCCCHHHHHHHHCCCEEEEEcCc
Confidence 22568899999999999886543
No 256
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=22.33 E-value=5.3e+02 Score=22.52 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=28.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.|.+|.-++-+ +....+|..+ .-+.+.-.|++|..|..||..+ - |-..-+++.... ...+
T Consensus 67 ~gk~I~~yGA~--------~kg~tlln~~-g~~~~~I~~vvD~np~K~G~~~-----P--Gt~ipI~~p~~l----~~~~ 126 (160)
T PF08484_consen 67 EGKRIAGYGAG--------AKGNTLLNYF-GLDNDLIDYVVDDNPLKQGKYL-----P--GTHIPIVSPEEL----KERK 126 (160)
T ss_dssp TT--EEEE-----------SHHHHHHHHH-T--TTTS--EEES-GGGTTEE------T--TT--EEEEGGG------SS-
T ss_pred cCCEEEEECcc--------hHHHHHHHHh-CCCcceeEEEEeCChhhcCccc-----C--CCCCeECCHHHH----hhCC
Confidence 67888888632 1112233333 2233455677777899999643 1 333333343332 2256
Q ss_pred cCEEEEcc
Q 018280 248 VSAVIVGA 255 (358)
Q Consensus 248 vd~VivGA 255 (358)
.|.|++-|
T Consensus 127 pd~vivla 134 (160)
T PF08484_consen 127 PDYVIVLA 134 (160)
T ss_dssp -SEEEES-
T ss_pred CCEEEEcC
Confidence 78888765
No 257
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.24 E-value=4.6e+02 Score=25.24 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=53.3
Q ss_pred ccHHH-HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcC---CcCEEEEcceeeecCC
Q 018280 187 GTALG-VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDG---RVSAVIVGADRVAANG 262 (358)
Q Consensus 187 ~ta~~-~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~---~vd~VivGAd~i~~nG 262 (358)
|.+++ +++.+.+.+..+++++-.+. -||.. ++.++.+ ++..+=+.+ .+|.+|++ ..|
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~--vQG~~-A~~~I~~-----------al~~~~~~~~~~~~Dviii~-----RGG 85 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPAS--VQGEG-AAASIVS-----------ALRKANEMGQADDFDVIIII-----RGG 85 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEecc--ccccc-hHHHHHH-----------HHHHHHhccccccccEEEEe-----cCC
Confidence 44544 77777777777888888876 45543 2444443 233332113 69999876 666
Q ss_pred ceeccc---ccHHHHHHHHhcCCeEEEeccC
Q 018280 263 DTANKI---GTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 263 ~v~nki---GT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|-.-.. =.+.+|-+-....+||+..-..
T Consensus 86 Gs~eDL~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 86 GSIEDLWAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred CChHHhcccChHHHHHHHHhCCCCEEEecCC
Confidence 543322 3467888888899999987543
No 258
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=22.23 E-value=7.6e+02 Score=24.32 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=38.5
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch--------HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds--------a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
-+|++.+ +.+.........+...|+++..++.. .+...+. ++...|++- ..=...| .++.+ -.++
T Consensus 93 ~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~lv~v~-~~~n~tG-~~~~~--~~I~ 165 (402)
T TIGR02006 93 NHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR-DDTILVSIM-HVNNEIG-VIQDI--AAIG 165 (402)
T ss_pred CEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-CCCEEEEEE-CCCcCce-ecccH--HHHH
Confidence 4566653 33433222223455679998887532 1222331 233333332 1111123 33332 2578
Q ss_pred HHHHhcCCeEEE
Q 018280 275 LCAKFHNILFYV 286 (358)
Q Consensus 275 ~~Ak~~~iPvyV 286 (358)
-+||+||++++|
T Consensus 166 ~l~~~~g~~liv 177 (402)
T TIGR02006 166 EICRERKVFFHV 177 (402)
T ss_pred HHHHHcCCEEEE
Confidence 899999999887
No 259
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.16 E-value=6.9e+02 Score=25.37 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=47.6
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceee-ecCCceec
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRV-AANGDTAN 266 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i-~~nG~v~n 266 (358)
.+..+.+.|. +|++.+ |.+.|.. +....+...|+++..+.- ..+...++ .+..+|++- .. -+.|.+.+
T Consensus 95 al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~-~~tklV~l~--sp~NPtG~v~d 167 (431)
T PRK08248 95 SILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAIT-DKTKALFAE--TIGNPKGDVLD 167 (431)
T ss_pred HHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcC-CCCeEEEEE--CCCCCCCcccC
Confidence 4444444453 566554 4554432 223346778999988863 23333342 356666552 22 12354443
Q ss_pred ccccHHHHHHHHhcCCeEEEe
Q 018280 267 KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 267 kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+ -.++-+||.+|++++|=
T Consensus 168 -i--~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 168 -I--EAVAAIAHEHGIPLIVD 185 (431)
T ss_pred -H--HHHHHHHHHcCCEEEEe
Confidence 2 36777899999998864
No 260
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=22.16 E-value=7.3e+02 Score=24.90 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeee-cCCce
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGDT 264 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~-~nG~v 264 (358)
..++..+.+.|. +|++. .|.+.|.. +....+...|++++.+.. ..+-..+ +.+..+|++ +... ++|.+
T Consensus 86 ~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l-~~~t~~V~l--e~p~NPtg~v 158 (418)
T TIGR01326 86 TYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAI-DENTKAVFA--ETIGNPAINV 158 (418)
T ss_pred HHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhc-CcCCeEEEE--ECCCCCCCee
Confidence 344555544454 55554 35554432 222335678999888763 2233333 235556655 2221 12333
Q ss_pred ecccccHHHHHHHHhcCCeEEEe
Q 018280 265 ANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.. --.++-+||++|++++|=
T Consensus 159 ~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 159 PD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred cC---HHHHHHHHHHcCCEEEEE
Confidence 32 235677899999998873
No 261
>PRK08114 cystathionine beta-lyase; Provisional
Probab=22.13 E-value=4e+02 Score=26.89 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=44.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc--c-hHHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
++....+.|. +|++.. ..+..-.++....|.+.||+++++. | ..+...++ ++..+|+ .+. ..|..
T Consensus 93 ~~~~ll~~GD--~Vv~~~-~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~-~~TrlV~--~Et------psNp~ 160 (395)
T PRK08114 93 AILAFVEQGD--HVLMTG-TAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQ-PNTKVVF--LES------PGSIT 160 (395)
T ss_pred HHHHHcCCCC--EEEEeC-CCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC-CCceEEE--EEC------CCCCC
Confidence 4555555554 466553 2333223343345778899999885 2 23444452 2332332 222 44444
Q ss_pred cc----HHHHHHHHhcC--CeEEE
Q 018280 269 GT----YSLALCAKFHN--ILFYV 286 (358)
Q Consensus 269 GT----~~lA~~Ak~~~--iPvyV 286 (358)
|. ..++-+||.+| ++++|
T Consensus 161 ~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 161 MEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred CEeecHHHHHHHHHHhCCCCEEEE
Confidence 43 34678888885 88876
No 262
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=22.12 E-value=3.6e+02 Score=26.11 Aligned_cols=67 Identities=7% Similarity=-0.008 Sum_probs=39.4
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHH-------HHHH
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYS-------LALC 276 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~-------lA~~ 276 (358)
.|++ + .|.+-+... .+...|..+..+.|- .-+...+..+|++ + ..-|..|+.. ++-+
T Consensus 107 ~Vl~-~-~p~y~~~~~---~~~~~g~~~~~v~~~---~~l~~~~~~~v~~-------~-~p~NPtG~~~~~~~~~~i~~~ 170 (357)
T TIGR03539 107 TVVI-P-ELAYPTYEV---GALLAGATPVAADDP---TELDPVGPDLIWL-------N-SPGNPTGRVLSVDELRAIVAW 170 (357)
T ss_pred EEEE-C-CCCcHHHHH---HHHhcCCEEeccCCh---hhcCccCccEEEE-------e-CCCCCcCccCCHHHHHHHHHH
Confidence 4444 3 666656543 244568877777542 1232233444443 2 3678888643 6778
Q ss_pred HHhcCCeEEE
Q 018280 277 AKFHNILFYV 286 (358)
Q Consensus 277 Ak~~~iPvyV 286 (358)
|++|++++++
T Consensus 171 a~~~~~~ii~ 180 (357)
T TIGR03539 171 ARERGAVVAS 180 (357)
T ss_pred HHHcCeEEEE
Confidence 9999999885
No 263
>PRK14368 Maf-like protein; Provisional
Probab=22.12 E-value=3.1e+02 Score=24.93 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeee-cCCceecccccHHHH
Q 018280 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~-~nG~v~nkiGT~~lA 274 (358)
.|..|.|+. .|+.+..+.-.-.+..|++.+ +-.+.+ ..-+.+++|||.|. -||.+..|=.+..=|
T Consensus 23 ~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA 91 (193)
T PRK14368 23 AGIEFDVVPADIPEEPLPGEEPVDHVLRLAREK----------ARAAAA-LAEGRFFIGADTIVVCDGEIMGKPKDEADA 91 (193)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCcEEEECCEEecCCCCHHHH
Confidence 488898874 355443332222244444321 111221 23478999999976 499999999998876
Q ss_pred --HHHHhcCCeEEE
Q 018280 275 --LCAKFHNILFYV 286 (358)
Q Consensus 275 --~~Ak~~~iPvyV 286 (358)
++-+..|.+..|
T Consensus 92 ~~~L~~lsG~~h~v 105 (193)
T PRK14368 92 VRMLKKLSGVPHEV 105 (193)
T ss_pred HHHHHHhCCCCcEE
Confidence 455556665444
No 264
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=22.08 E-value=2.8e+02 Score=26.82 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCc--e
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD--T 264 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~--v 264 (358)
..+..+++.+.++|.+.-|++.+.-+.....+|. ....+.|+ .++==|..|.+- ....+....+......|. +
T Consensus 74 ~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~-~~a~~~gi--rilGPNc~Giin--~~~~~~~~~~~~~~~~G~Val 148 (286)
T TIGR01019 74 PFAADAIFEAIDAGIELIVCITEGIPVHDMLKVK-RYMEESGT--RLIGPNCPGIIT--PGECKIGIMPGHIHKPGNVGI 148 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHcCC--EEECCCCceEEc--ccccceeeccccCCCCCcEEE
Confidence 5678899999999999888888887655344552 23445554 445444555433 222222222222334564 5
Q ss_pred ecccccHHHHHH--HHhcCCeEEE
Q 018280 265 ANKIGTYSLALC--AKFHNILFYV 286 (358)
Q Consensus 265 ~nkiGT~~lA~~--Ak~~~iPvyV 286 (358)
+++.|++..+++ +++.++.|.-
T Consensus 149 iSQSG~l~~~~~~~a~~~giG~S~ 172 (286)
T TIGR01019 149 VSRSGTLTYEAVHQLTKAGFGQST 172 (286)
T ss_pred EeccHHHHHHHHHHHHHcCCCeEE
Confidence 999998888765 7778887753
No 265
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=21.98 E-value=4.9e+02 Score=25.80 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=58.7
Q ss_pred cccccccHH-HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC-CCC--eEEEcchH-HHHhhhcCCcCEEEEc-c
Q 018280 182 ATAGYGTAL-GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD-RIP--ATLIADSA-AAALMKDGRVSAVIVG-A 255 (358)
Q Consensus 182 at~g~~ta~-~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~-GI~--vtlI~Dsa-~~~~m~~~~vd~VivG-A 255 (358)
.|+|-|-.- .+++.+.++....+|++.+---+- |..-+-..+... ... -.=|+|.. +..+|++.++|.|+== |
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYA-gn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfAA 83 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYA-GNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVHFAA 83 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCceEEEEeccccc-CCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEEech
Confidence 344455543 477888888888889998866554 322111223221 111 22356543 4567766678877743 3
Q ss_pred ee----eecCCce---ecccccHHHHHHHHhcCC
Q 018280 256 DR----VAANGDT---ANKIGTYSLALCAKFHNI 282 (358)
Q Consensus 256 d~----i~~nG~v---~nkiGT~~lA~~Ak~~~i 282 (358)
++ =..+... -|-+||+.+--+|+.+..
T Consensus 84 ESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~ 117 (340)
T COG1088 84 ESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG 117 (340)
T ss_pred hccccccccChhhhhhcchHHHHHHHHHHHHhcc
Confidence 22 2222222 388999999999999985
No 266
>PRK04694 Maf-like protein; Reviewed
Probab=21.97 E-value=4.1e+02 Score=24.01 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeec-CCceecccccHHHH
Q 018280 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~-nG~v~nkiGT~~lA 274 (358)
.|..|.|+. .|+.+..+..+-.+.+|+..+-. ++..-+++..-+.+++|||.|.. ||.+..|=.+..-|
T Consensus 18 ~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~lvI~aDTvv~~~g~ilgKP~~~~eA 90 (190)
T PRK04694 18 LDVPFQTLQLDVPEVRAADESPDHYVQRVALEKAH-------AGLALVQAADADAIVLGSDTEVVLGERVFGKPVDVDDA 90 (190)
T ss_pred CCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 377888875 56544433222234445442211 11111211235789999999875 99999999998776
Q ss_pred --HHHHhcCCeEEEe
Q 018280 275 --LCAKFHNILFYVA 287 (358)
Q Consensus 275 --~~Ak~~~iPvyV~ 287 (358)
++-+..|..-.|.
T Consensus 91 ~~~L~~lsG~~h~V~ 105 (190)
T PRK04694 91 IAMLRALSGRTHQVL 105 (190)
T ss_pred HHHHHHhCCCceEEE
Confidence 4666666654443
No 267
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=21.92 E-value=5e+02 Score=26.60 Aligned_cols=91 Identities=19% Similarity=0.093 Sum_probs=55.8
Q ss_pred cHHHHHHHHHH-CCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc-------hHHHHhhhcCCcCEEEEcceeee
Q 018280 188 TALGVIRALHS-EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-------SAAAALMKDGRVSAVIVGADRVA 259 (358)
Q Consensus 188 ta~~~l~~a~~-~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D-------sa~~~~m~~~~vd~VivGAd~i~ 259 (358)
-++..+..+.. .| ..+++|. |.+.|.. .-+...|+++.-|+- .+....+++.++.++.+=..-=.
T Consensus 166 ~al~l~~~~l~~pG---d~v~vE~-PtY~~~~---~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qN 238 (459)
T COG1167 166 QALDLLLRLLLDPG---DTVLVED-PTYPGAL---QALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQN 238 (459)
T ss_pred HHHHHHHHHhCCCC---CEEEEcC-CCcHHHH---HHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCC
Confidence 35555544433 23 3455564 5555653 236667777666652 23444555557888887766666
Q ss_pred cCCceecccccHHHHHHHHhcCCeEE
Q 018280 260 ANGDTANKIGTYSLALCAKFHNILFY 285 (358)
Q Consensus 260 ~nG~v~nkiGT~~lA~~Ak~~~iPvy 285 (358)
+-|.+..---=..+.-+|++|+++++
T Consensus 239 PtG~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 239 PTGVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEE
Confidence 66666666666678888899999876
No 268
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=21.91 E-value=1.7e+02 Score=31.64 Aligned_cols=49 Identities=6% Similarity=-0.046 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCC-cchHH-HHHHHHhCCCCeEEE
Q 018280 185 GYGTALGVIRALHSEGVLERAYCSETRPFN-QGSRL-TAFELVHDRIPATLI 234 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~-qG~rl-ta~eL~~~GI~vtlI 234 (358)
+-|.....|-.|.++||+..|.|- =.-.+ |-..+ =|+.|.++|+.|.|-
T Consensus 382 ~dSpIV~ALi~AA~nGKqVtvlVE-LkARFDEE~NI~WAk~LE~AGvhVvyG 432 (696)
T COG0855 382 KDSPIVRALIDAAENGKQVTVLVE-LKARFDEEANIHWAKRLERAGVHVVYG 432 (696)
T ss_pred CCCHHHHHHHHHHHcCCeEEEEEE-EhhhcChhhhhHHHHHHHhCCcEEEec
Confidence 456777777777788999888763 22222 22222 277899999988774
No 269
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=21.84 E-value=1.8e+02 Score=28.49 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHCCC---eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhh
Q 018280 194 RALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (358)
Q Consensus 194 ~~a~~~g~---~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m 243 (358)
..|+..|| .+.|+|++ ||.+|. | ..++++.|..+.+|+|.-++..+
T Consensus 144 ~vA~algk~v~dltV~vLd-RpRH~~--l-I~eiR~~Gari~Li~DGDV~~ai 192 (309)
T cd01516 144 AVAKALGKPVEDLTVVVLD-RPRHAA--L-IEEIREAGARIKLIPDGDVAAAI 192 (309)
T ss_pred HHHHHcCCChhHeEEEEEc-CchHHH--H-HHHHHHcCCeEEEeccccHHHHH
Confidence 33444555 46666665 999975 4 56899999999999997665544
No 270
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=21.79 E-value=68 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.6
Q ss_pred eecccccHHHHHHHHhcCCeEEEe
Q 018280 264 TANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+=-.=++.+|.+|+.+|+||+++
T Consensus 168 ~~vdME~aAva~va~~~~ip~~~i 191 (228)
T TIGR01704 168 IAVEMEATAIAHVCHNFNVPFVVV 191 (228)
T ss_pred cEecccHHHHHHHHHHhCCCEEEE
Confidence 334455788999999999999996
No 271
>PRK00032 Maf-like protein; Reviewed
Probab=21.72 E-value=5.1e+02 Score=23.41 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred cCEEEEcceeee-cCCceecccccHHHH--HHHHhcCCeEEEe
Q 018280 248 VSAVIVGADRVA-ANGDTANKIGTYSLA--LCAKFHNILFYVA 287 (358)
Q Consensus 248 vd~VivGAd~i~-~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~ 287 (358)
-+.+++|||.|. -||.+..|=.+..-| ++-+..|.+..|.
T Consensus 62 ~~~~vI~aDTvV~~~g~IlgKP~~~eeA~~~L~~lsG~~h~v~ 104 (190)
T PRK00032 62 QDLPVLGADTIVVLDGEVLEKPRDAADAAAMLRALSGRTHQVM 104 (190)
T ss_pred CCCEEEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCcEEE
Confidence 467999999976 599999999998876 4666666655543
No 272
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.68 E-value=4e+02 Score=20.93 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=16.6
Q ss_pred HHhCCCCeEEEcchH--HHHhhhcCCcCEEEEcce
Q 018280 224 LVHDRIPATLIADSA--AAALMKDGRVSAVIVGAD 256 (358)
Q Consensus 224 L~~~GI~vtlI~Dsa--~~~~m~~~~vd~VivGAd 256 (358)
|.+.|+++.+..-+. +.... .++|.++.+.+
T Consensus 27 l~~~gi~~~v~~~~~~e~~~~~--~~~D~iv~t~~ 59 (94)
T PRK10310 27 CQSHNIPVELIQCRVNEIETYM--DGVHLICTTAR 59 (94)
T ss_pred HHHCCCeEEEEEecHHHHhhhc--CCCCEEEECCc
Confidence 455666655444221 22233 56788877763
No 273
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=21.67 E-value=48 Score=29.20 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=13.6
Q ss_pred ecCCCCccEEEeCCCCcc
Q 018280 338 VTPANLITGIITEKVSVS 355 (358)
Q Consensus 338 vtP~~lIt~iITE~Gi~~ 355 (358)
.+|...++.+|||.|+..
T Consensus 108 t~~r~dvd~VVTEyGvA~ 125 (154)
T PF13336_consen 108 TTPRHDVDYVVTEYGVAD 125 (154)
T ss_dssp SB-TTT-SEEEETTEEEE
T ss_pred ccCcccCCEEEcCCEEEE
Confidence 468899999999999853
No 274
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=21.61 E-value=84 Score=31.13 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=50.2
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH------HHHhhhcCCcCEEEEcceee
Q 018280 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA------AAALMKDGRVSAVIVGADRV 258 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa------~~~~m~~~~vd~VivGAd~i 258 (358)
|+.+++.++.-|++.|-+--++|-+.|+..-- +....- ++.+.-|-. +.--+ .+-|.++
T Consensus 25 gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~------~f~~a~-e~i~v~~f~dil~~~iqe~L--~~~n~I~------ 89 (361)
T COG1759 25 GSHSALQILDGAKEEGFRTIAVCQRGREKPYE------KFPVAD-EVIIVDKFSDILNEEIQEEL--RELNAIF------ 89 (361)
T ss_pred ecchHHHHhhhHHhcCCcEEEEEecCccchHH------hhchhh-eEEEechhHHHhhHHHHHHH--HHcCeEE------
Confidence 45799999999999998777777777665311 111000 233322211 11112 3445553
Q ss_pred ecCCceecccccHHHHHHHHhcCCeEEE
Q 018280 259 AANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 259 ~~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
.+||+.+.-+|.-.+ .+++-+|.+=
T Consensus 90 IP~gSfv~Y~G~d~i---e~~~~vP~fG 114 (361)
T COG1759 90 IPHGSFVAYVGYDGI---ENEFEVPMFG 114 (361)
T ss_pred ecCCceEEEecchhh---hhcccCcccc
Confidence 479999999997643 4667777764
No 275
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.48 E-value=1e+02 Score=27.57 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCeeEEEEecCC
Q 018280 190 LGVIRALHSEGVLERAYCSETR 211 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~Esr 211 (358)
..+++.+.+.|...+|+++++.
T Consensus 17 ~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 17 ADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred HHHHHHHHHCCCEEEEEEChHH
Confidence 3567788777888888888764
No 276
>PRK05839 hypothetical protein; Provisional
Probab=21.46 E-value=7.7e+02 Score=24.06 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=39.0
Q ss_pred EEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH-HHHhh-----hcCCcCEEEEcceeeecCCceecccccH-------
Q 018280 205 AYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALM-----KDGRVSAVIVGADRVAANGDTANKIGTY------- 271 (358)
Q Consensus 205 V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa-~~~~m-----~~~~vd~VivGAd~i~~nG~v~nkiGT~------- 271 (358)
.++++ .|...+... .+...|+++..++... -++.+ ...++.+| +-+ .--|..|+.
T Consensus 111 ~vlv~-~P~y~~~~~---~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v-------~i~-nP~NPTG~~~s~~~l~ 178 (374)
T PRK05839 111 TIAYP-NPFYQIYEG---AAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLV-------ILN-SPNNPTGRTLSLEELI 178 (374)
T ss_pred EEEEC-CCCchhhHH---HHHhcCCEEEEeecccccCCcCCcchhhhccccEE-------EEe-CCCCCcCcccCHHHHH
Confidence 34444 477766543 2457788887776432 12221 01233333 333 345666664
Q ss_pred HHHHHHHhcCCeEEE
Q 018280 272 SLALCAKFHNILFYV 286 (358)
Q Consensus 272 ~lA~~Ak~~~iPvyV 286 (358)
.++-.|+.||+++++
T Consensus 179 ~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 179 EWVKLALKHDFILIN 193 (374)
T ss_pred HHHHHHHHcCCEEEe
Confidence 566678999998875
No 277
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.34 E-value=4.4e+02 Score=24.29 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=39.7
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHHhCCCCeEEE----------cchHHHHhhhcCCcCEEE
Q 018280 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLI----------ADSAAAALMKDGRVSAVI 252 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~eL~~~GI~vtlI----------~Dsa~~~~m~~~~vd~Vi 252 (358)
|.|+-+..|-.|.+.|+ +.+ +.|.=.+|..-|. ..-.+.|||+.++ -|.++...|...++|.|+
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~l----erA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvv 84 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYAL----ERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVV 84 (200)
T ss_pred CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHH----HHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34565555555544443 222 2333455555453 2356889998664 466777788888999887
Q ss_pred Ec
Q 018280 253 VG 254 (358)
Q Consensus 253 vG 254 (358)
+.
T Consensus 85 LA 86 (200)
T COG0299 85 LA 86 (200)
T ss_pred Ec
Confidence 63
No 278
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.30 E-value=2.8e+02 Score=28.13 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeee-cCCcee
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGDTA 265 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~-~nG~v~ 265 (358)
.+++.+.+.| -+|++.. |.+.|.. +....+...|+.++++.- ..+...+ +++..+|++ +.+. ..|.+.
T Consensus 93 ~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai-~~~tklV~v--esp~NptG~v~ 165 (427)
T PRK05994 93 LVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAI-TPRTKAIFI--ESIANPGGTVT 165 (427)
T ss_pred HHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhc-CcCCeEEEE--ECCCCCCCeec
Confidence 3444444444 3555543 4444432 112236678999888752 2233334 234555554 2221 234333
Q ss_pred cccccHHHHHHHHhcCCeEEE
Q 018280 266 NKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 266 nkiGT~~lA~~Ak~~~iPvyV 286 (358)
. --.++-+||+||++++|
T Consensus 166 d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 166 D---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred C---HHHHHHHHHHcCCEEEE
Confidence 2 23577789999999887
No 279
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.22 E-value=3.3e+02 Score=24.20 Aligned_cols=67 Identities=10% Similarity=-0.058 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCC-ceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG-DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG-~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.++.|.+.|++++++.+.. -+ .+.|.++++--.....- ......|....-.-+...++|++-+|--+
T Consensus 14 ~~~~l~~~g~~v~v~~~~~---~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~ 81 (198)
T cd01748 14 VANALERLGAEVIITSDPE---EI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGM 81 (198)
T ss_pred HHHHHHHCCCeEEEEcChH---Hh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 4677889999999988643 24 57888877531100000 00112344444444455699999776444
No 280
>cd08512 PBP2_NikA_DppA_OppA_like_7 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=21.12 E-value=2.3e+02 Score=28.57 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=40.5
Q ss_pred HHHHHHHH-HHCCCeeEEEEecCCCCC-cchHHHHHHHHhCCCCeEEEc-ch-HHHHhhhcCCcCEEEEc
Q 018280 189 ALGVIRAL-HSEGVLERAYCSETRPFN-QGSRLTAFELVHDRIPATLIA-DS-AAAALMKDGRVSAVIVG 254 (358)
Q Consensus 189 a~~~l~~a-~~~g~~~~V~v~EsrP~~-qG~rlta~eL~~~GI~vtlI~-Ds-a~~~~m~~~~vd~VivG 254 (358)
|.+.|..| +..|..+++.+.-+.|.. +-+...+..|.+.||++++.. |. .....+..++.|+++.|
T Consensus 321 A~~lL~eaG~~~g~~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~d~~~~~ 390 (476)
T cd08512 321 AKELLAEAGYPNGFKLTLSYNSGNEPREDIAQLLQASLAQIGIKVEIEPVPWAQLLEAARSREFDIFIGG 390 (476)
T ss_pred HHHHHHHcCCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHHhhCCCccEEEEe
Confidence 44455555 223666777766555443 344455678999999999865 32 33334556778887765
No 281
>PRK07077 hypothetical protein; Provisional
Probab=21.09 E-value=74 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.9
Q ss_pred CceecccccHHHHHHHHhcCCeEEEe
Q 018280 262 GDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
|..+--.=++.+|..|+.+||||+++
T Consensus 137 gA~aVDMEsaAvA~va~~~giPf~vi 162 (238)
T PRK07077 137 GALAVDMESHIAAAFAAARGLPFAAC 162 (238)
T ss_pred CCEEEehhHHHHHHHHHHcCCCEEEE
Confidence 44455556788999999999999986
No 282
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.04 E-value=6e+02 Score=22.69 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=19.0
Q ss_pred HHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEE
Q 018280 221 AFELVHDRIPATLIAD---SAAAALMKDGRVSAVIV 253 (358)
Q Consensus 221 a~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~Viv 253 (358)
++.+++.|+++..|++ +.++-+. ...|.++.
T Consensus 131 ~~~ak~~g~~iI~IT~~~~s~l~~l~--~~ad~~l~ 164 (197)
T PRK13936 131 IQAAHEREMHVVALTGRDGGKMASLL--LPEDVEIR 164 (197)
T ss_pred HHHHHHCCCeEEEEECCCCChhhhhh--ccCCEEEE
Confidence 5567788888888887 3333332 23665554
No 283
>PLN02509 cystathionine beta-lyase
Probab=21.03 E-value=9.1e+02 Score=24.95 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcchH---HHHhhhcCCcCEEEEcceeeecCCcee
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~Dsa---~~~~m~~~~vd~VivGAd~i~~nG~v~ 265 (358)
+..+..+.+.|. +|++ +.|.+.+.. +....+...|+.+..+...- +...+ +++..+|++ + ...
T Consensus 161 i~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai-~~~TklV~l-------e-sPs 227 (464)
T PLN02509 161 LSAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAI-GPQTKLVWL-------E-SPT 227 (464)
T ss_pred HHHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhC-CcCCeEEEE-------E-CCC
Confidence 333334444454 5665 456665532 32233567899888764322 22222 123333332 1 245
Q ss_pred cccccH----HHHHHHHhcCCeEEE
Q 018280 266 NKIGTY----SLALCAKFHNILFYV 286 (358)
Q Consensus 266 nkiGT~----~lA~~Ak~~~iPvyV 286 (358)
|..|.. .++-+||+||++++|
T Consensus 228 NPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 228 NPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 555654 356679999999987
No 284
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=21.03 E-value=1.9e+02 Score=28.43 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=32.5
Q ss_pred HHHHCCC---eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhh
Q 018280 195 ALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (358)
Q Consensus 195 ~a~~~g~---~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m 243 (358)
.|+..|| .++|.|++ ||.+|. | ..++++.|..+.+|+|.-++..+
T Consensus 145 vA~algk~~~dltV~vLd-RpRH~~--l-I~eiR~~Gari~Li~DGDVa~ai 192 (321)
T TIGR00330 145 VAKALGKPLSDLTVTILA-KPRHDA--V-IAEMQQLGVRVFAIPDGDVAASI 192 (321)
T ss_pred HHHHcCCChhHeEEEEEc-CchHHH--H-HHHHHHcCCeEEEeccccHHHHH
Confidence 3444555 45666665 999986 4 56899999999999997664443
No 285
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=20.90 E-value=7.3e+02 Score=23.57 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=40.3
Q ss_pred CcEEEEecCCCcccccccccHHH-HHHHHHHC-CCeeEEEEecCCCCCcch--HHHHHHHHhCCCCeEEEcch-HHHHhh
Q 018280 169 KFSVLTHCNTGSLATAGYGTALG-VIRALHSE-GVLERAYCSETRPFNQGS--RLTAFELVHDRIPATLIADS-AAAALM 243 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~-~l~~a~~~-g~~~~V~v~EsrP~~qG~--rlta~eL~~~GI~vtlI~Ds-a~~~~m 243 (358)
+.+|+-.+++|+ |=+|... +...+..+ | ..+|.+....|+.-|+ .|.. .-...|+|+....+. .+...+
T Consensus 194 ~~vi~~vGptGv----GKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~~a~eql~~-~~~~~~~p~~~~~~~~~l~~~l 267 (282)
T TIGR03499 194 GGVIALVGPTGV----GKTTTLAKLAARFVLEHG-NKKVALITTDTYRIGAVEQLKT-YAKILGVPVKVARDPKELRKAL 267 (282)
T ss_pred CeEEEEECCCCC----CHHHHHHHHHHHHHHHcC-CCeEEEEECCccchhHHHHHHH-HHHHhCCceeccCCHHHHHHHH
Confidence 456767777764 3334443 33344333 3 2455555666665444 2211 123468888776653 233333
Q ss_pred h-cCCcCEEEE
Q 018280 244 K-DGRVSAVIV 253 (358)
Q Consensus 244 ~-~~~vd~Viv 253 (358)
+ -.+.|.||+
T Consensus 268 ~~~~~~d~vli 278 (282)
T TIGR03499 268 DRLRDKDLILI 278 (282)
T ss_pred HHccCCCEEEE
Confidence 2 145677765
No 286
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.90 E-value=8.7e+02 Score=24.46 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=51.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCC-CCCcchHHHHHHHHhCCCCeEEEcchH---HHHhh
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETR-PFNQGSRLTAFELVHDRIPATLIADSA---AAALM 243 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~Esr-P~~qG~rlta~eL~~~GI~vtlI~Dsa---~~~~m 243 (358)
.|.+|...+.. ..+.++.+.+.+.|-....+++.+. |.. ..++ ...+...+++...+-+.- +...+
T Consensus 298 ~gk~v~i~~~~--------~~~~~l~~~L~e~G~~v~~v~~~~~~~~~-~~~~-~~~~~~~~~~~~~v~~~d~~el~~~i 367 (428)
T cd01965 298 GGKRVAIAGDP--------DLLLGLSRFLLEMGAEPVAAVTGTDNPPF-EKRM-ELLASLEGIPAEVVFVGDLWDLESLA 367 (428)
T ss_pred cCCEEEEEcCh--------HHHHHHHHHHHHcCCcceEEEEcCCCchh-HHHH-HHhhhhcCCCceEEECCCHHHHHHHh
Confidence 36666665432 3456666677777776655555433 332 3334 222333556544444322 23346
Q ss_pred hcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 244 ~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
++.++|.++-+ ..-.-+|++.++|++.+.
T Consensus 368 ~~~~pdliig~----------------~~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 368 KEEPVDLLIGN----------------SHGRYLARDLGIPLVRVG 396 (428)
T ss_pred hccCCCEEEEC----------------chhHHHHHhcCCCEEEec
Confidence 55567766432 223467888999998653
No 287
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=20.88 E-value=2.2e+02 Score=28.72 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCeE-EEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPAT-LIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vt-lI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
....|.+.||++. +++|+...-+ +.. -|+-.+ .++.+.+.+..-.+-++||+|++.+
T Consensus 170 lk~lL~~~Gi~v~~~lpd~~~~e~---~~~----~~~~~~----~~~~~~~~~~A~~Le~~~GiP~~~~ 227 (407)
T TIGR01279 170 LRLELKQLGIPVVGFLPASHFTEL---PVI----GPGTVV----APLQPYLSDTATTLRRERGAKVLSA 227 (407)
T ss_pred HHHHHHHcCCeEEEEeCCCCcchh---hhc----CCCeEE----EEechHHHHHHHHHHHHhCCccccC
Confidence 3556888999998 8898754432 111 111111 1344566665556778899998875
No 288
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=20.84 E-value=76 Score=28.98 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=18.0
Q ss_pred ccccHHHHHHHHhcCCeEEEe
Q 018280 267 KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 267 kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
-.=++.+|.+|+++|+||+++
T Consensus 131 dMEsaava~va~~~gip~~~i 151 (212)
T TIGR03468 131 DMESGAVAAVAAAAGLPFAVI 151 (212)
T ss_pred eChHHHHHHHHHHcCCCEEEE
Confidence 344678999999999999987
No 289
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.82 E-value=5.9e+02 Score=26.38 Aligned_cols=78 Identities=24% Similarity=0.230 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccc
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIG 269 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiG 269 (358)
+.+.+.+++.| ..|++.+.||..++.. ...+...||++..-.... ... ..+|.|++.- | + -.
T Consensus 20 ~a~a~~L~~~G--~~v~v~D~~~~~~~~~--~~~~~~~~i~~~~g~~~~--~~~--~~~d~vV~SP------G-i---~~ 81 (448)
T COG0771 20 LAAARFLLKLG--AEVTVSDDRPAPEGLA--AQPLLLEGIEVELGSHDD--EDL--AEFDLVVKSP------G-I---PP 81 (448)
T ss_pred HHHHHHHHHCC--CeEEEEcCCCCccchh--hhhhhccCceeecCccch--hcc--ccCCEEEECC------C-C---CC
Confidence 34456666666 7888889999986653 346778888877654433 223 5677775432 2 2 23
Q ss_pred cHHHHHHHHhcCCeEE
Q 018280 270 TYSLALCAKFHNILFY 285 (358)
Q Consensus 270 T~~lA~~Ak~~~iPvy 285 (358)
+.++-..|+..|+|+.
T Consensus 82 ~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 82 THPLVEAAKAAGIEII 97 (448)
T ss_pred CCHHHHHHHHcCCcEE
Confidence 4457778888888866
No 290
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.82 E-value=8.1e+02 Score=24.11 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=49.1
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-ch-HHHHhhhcC
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-DS-AAAALMKDG 246 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-Ds-a~~~~m~~~ 246 (358)
|.+|+.++.. ..+.++.+.+.+-|-....+++...+...-.++ . .+.+.+-+..++. |. .+...+++.
T Consensus 271 g~~v~i~~~~--------~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~-~-~~~~~~~~~v~~~~~~~~~~~~l~~~ 340 (398)
T PF00148_consen 271 GKRVAIYGDP--------DRALGLARFLEELGMEVVAVGCDDKSPEDEERL-R-WLLEESDPEVIIDPDPEEIEELLEEL 340 (398)
T ss_dssp T-EEEEESSH--------HHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHH-H-HHHHTTCSEEEESCBHHHHHHHHHHH
T ss_pred CceEEEEcCc--------hhHHHHHHHHHHcCCeEEEEEEccCchhHHHHH-H-HHhhCCCcEEEeCCCHHHHHHHHHhc
Confidence 5677777643 456666677777787766666655543322233 2 3444442222332 33 445556556
Q ss_pred CcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+.|.++ |+..-.-.|+..++|++.+.
T Consensus 341 ~pdl~i----------------g~~~~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 341 KPDLLI----------------GSSHERYLAKKLGIPLIRIG 366 (398)
T ss_dssp T-SEEE----------------ESHHHHHHHHHTT--EEE-S
T ss_pred CCCEEE----------------echhhHHHHHHhCCCeEEEe
Confidence 677664 34445567888899988753
No 291
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=20.79 E-value=2.7e+02 Score=24.74 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=34.9
Q ss_pred CCcEEEEecCCCcccccccccHH-HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTAL-GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDG 246 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~-~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~ 246 (358)
.|.+++.. |||-+- ++-+.++..| -+|+|+|..|.. +-+-...|.++.-+ .... +
T Consensus 22 ~Gk~vvV~---------GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~------alqA~~dGf~v~~~-----~~a~--~ 77 (162)
T PF00670_consen 22 AGKRVVVI---------GYGKVGKGIARALRGLG--ARVTVTEIDPIR------ALQAAMDGFEVMTL-----EEAL--R 77 (162)
T ss_dssp TTSEEEEE-----------SHHHHHHHHHHHHTT---EEEEE-SSHHH------HHHHHHTT-EEE-H-----HHHT--T
T ss_pred CCCEEEEe---------CCCcccHHHHHHHhhCC--CEEEEEECChHH------HHHhhhcCcEecCH-----HHHH--h
Confidence 57677665 456653 3445665444 789999999953 22455689987643 2345 6
Q ss_pred CcCEEEE
Q 018280 247 RVSAVIV 253 (358)
Q Consensus 247 ~vd~Viv 253 (358)
..|.++.
T Consensus 78 ~adi~vt 84 (162)
T PF00670_consen 78 DADIFVT 84 (162)
T ss_dssp T-SEEEE
T ss_pred hCCEEEE
Confidence 8887764
No 292
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=20.77 E-value=1.4e+02 Score=26.78 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCeeEEEEecCC
Q 018280 189 ALGVIRALHSEGVLERAYCSETR 211 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~Esr 211 (358)
+..+++.+.+.|...+|+++++.
T Consensus 17 ~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 17 AADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred HHHHHHHHHHCCCEEEEEEChhH
Confidence 34677888888888888888764
No 293
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=20.77 E-value=7.6e+02 Score=23.75 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=52.8
Q ss_pred HHHHHHhCCCCeE-EEc-chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 220 TAFELVHDRIPAT-LIA-DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 220 ta~eL~~~GI~vt-lI~-Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
.+++|.+.|+.|- |++ |-.++.-+..-.+..|.-.+-=|-+|=++.|+ +.+-++....++|++|-+.-.+-+
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~---~~l~~i~e~~~vpVivdAGIgt~s 202 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNL---LNLQIIIENAKIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCH---HHHHHHHHcCCCcEEEeCCcCCHH
Confidence 4778999999875 443 66677667555666666666666666666665 678888898999999988776643
No 294
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=20.77 E-value=2.5e+02 Score=28.12 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=35.1
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEcchHHHHhhhcCCcC
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
+||..+.. +....+++.+++.+....|++....| |. +. +.+ .-+.....--..+-.+.++.++|
T Consensus 2 kiliiG~G--------~~~~~l~~~~~~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~~~~~d~~~l~~~~~~~~id 66 (423)
T TIGR00877 2 KVLVIGNG--------GREHALAWKLAQSPLVKYVYVAPGNA---GT---AR-LAKNKNVAISITDIEALVEFAKKKKID 66 (423)
T ss_pred EEEEECCC--------hHHHHHHHHHHhCCCccEEEEECCCH---HH---hh-hcccccccCCCCCHHHHHHHHHHhCCC
Confidence 46666543 23455667777766666777665444 32 11 111 11111111112333444556788
Q ss_pred EEEEcce
Q 018280 250 AVIVGAD 256 (358)
Q Consensus 250 ~VivGAd 256 (358)
.|+.|.+
T Consensus 67 ~vi~~~e 73 (423)
T TIGR00877 67 LAVIGPE 73 (423)
T ss_pred EEEECCc
Confidence 8887765
No 295
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=20.75 E-value=3.6e+02 Score=23.27 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=44.8
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCC-eEEEcchHHHHhhhcC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP-ATLIADSAAAALMKDG 246 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~-vtlI~Dsa~~~~m~~~ 246 (358)
.+.+||-.| | |+|.+ ++ .+.+.+...+|+.+|..|.. .+++.+.+...+++ ++++.......+ ...
T Consensus 31 ~~~~vLDlG-~------G~G~i-~~--~la~~~~~~~v~~vDi~~~a--~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~ 97 (170)
T PF05175_consen 31 KGGRVLDLG-C------GSGVI-SL--ALAKRGPDAKVTAVDINPDA--LELAKRNAERNGLENVEVVQSDLFEAL-PDG 97 (170)
T ss_dssp TTCEEEEET-S------TTSHH-HH--HHHHTSTCEEEEEEESBHHH--HHHHHHHHHHTTCTTEEEEESSTTTTC-CTT
T ss_pred cCCeEEEec-C------ChHHH-HH--HHHHhCCCCEEEEEcCCHHH--HHHHHHHHHhcCccccccccccccccc-ccc
Confidence 356899887 3 44533 32 22334667789999988764 23444457778887 887775543332 246
Q ss_pred CcCEEEEc
Q 018280 247 RVSAVIVG 254 (358)
Q Consensus 247 ~vd~VivG 254 (358)
+.|.|+..
T Consensus 98 ~fD~Iv~N 105 (170)
T PF05175_consen 98 KFDLIVSN 105 (170)
T ss_dssp CEEEEEE-
T ss_pred ceeEEEEc
Confidence 77777665
No 296
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=20.69 E-value=5e+02 Score=22.91 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=41.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCC--CeEEEcchHHHHhhh-
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAAALMK- 244 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI--~vtlI~Dsa~~~~m~- 244 (358)
.+++||-.|- | .|.. .+..|...+..-+|+..|-.|.. ...+...+...|+ +++++...+...+-.
T Consensus 40 ~~~~vlDlG~-G------tG~~--s~~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 40 KGDMILDIGC-G------TGSV--TVEASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred CcCEEEEeCC-c------CCHH--HHHHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 5788887762 2 2322 12222333455689999998864 2222234555664 577776555433221
Q ss_pred cCCcCEEEEc
Q 018280 245 DGRVSAVIVG 254 (358)
Q Consensus 245 ~~~vd~VivG 254 (358)
...+|.|++|
T Consensus 109 ~~~~D~V~~~ 118 (198)
T PRK00377 109 NEKFDRIFIG 118 (198)
T ss_pred CCCCCEEEEC
Confidence 2457777774
No 297
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.64 E-value=5.5e+02 Score=24.44 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCe
Q 018280 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPA 231 (358)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~v 231 (358)
.+.+|...++... .-..+|-++..| |+-+|+|.+++.....+| .+++=++..-...=..+ ...|....-++
T Consensus 38 ~l~~Nt~~Fl~G~---pannvLL~G~rG---tGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l-~~~l~~~~~kF 108 (249)
T PF05673_consen 38 ALIENTEQFLQGL---PANNVLLWGARG---TGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPEL-LDLLRDRPYKF 108 (249)
T ss_pred HHHHHHHHHHcCC---CCcceEEecCCC---CCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHH-HHHHhcCCCCE
Confidence 4445555566521 225577786665 566677888887777767 56554443322222223 33566677777
Q ss_pred EEEcch
Q 018280 232 TLIADS 237 (358)
Q Consensus 232 tlI~Ds 237 (358)
.+.+|-
T Consensus 109 Ilf~DD 114 (249)
T PF05673_consen 109 ILFCDD 114 (249)
T ss_pred EEEecC
Confidence 777764
No 298
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=2.3e+02 Score=24.77 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=33.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCC----CcchHHHHHHHHhCCCCeEEE
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPF----NQGSRLTAFELVHDRIPATLI 234 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~----~qG~rlta~eL~~~GI~vtlI 234 (358)
|-..|+.||-.| +. ..+.+.+|..-|+.-++|-. ..-.++ |.+|++.|..++.-
T Consensus 65 darIVISHaG~G--------SI----L~~~rl~kplIv~pr~s~y~elvDdHQvel-a~klae~~~vv~~s 122 (161)
T COG5017 65 DARIVISHAGEG--------SI----LLLLRLDKPLIVVPRSSQYQELVDDHQVEL-ALKLAEINYVVACS 122 (161)
T ss_pred cceEEEeccCcc--------hH----HHHhhcCCcEEEEECchhHHHhhhhHHHHH-HHHHHhcCceEEEc
Confidence 556777887554 33 34445688877777676421 122344 77888888877766
No 299
>PF10699 HAP2-GCS1: Male gamete fusion factor; InterPro: IPR018928 The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative cell-specific protein 1). HAP2 is expressed only in the haploid sperm and is required for efficient guidance of the pollen tube to the ovules. In Arabidopsis the protein is a predicted membrane protein with an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain []. HAP2-GCS1 is found from plants to lower eukaryotes and is necessary for the fusion of the gametes in fertilisation. It is involved in a novel mechanism for gamete fusion where a first species-specific protein binds male and female gamete membranes together after which a second, broadly conserved protein, either directly or indirectly, causes fusion of the two membranes together. The broadly conserved protein is represented by this HAP2-GCS1 domain, conserved from plants to lower eukaryotes []. In Plasmodium berghei the protein is expressed only in male gametocytes and gametes, having a male-specific function during the interaction with female gametes, and being indispensable for parasite fertilisation. The gene in plants and eukaryotes might well have originated from acquisition of plastids from red algae [].
Probab=20.61 E-value=38 Score=23.95 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=21.7
Q ss_pred EEcceeeecCCceecccccHHHHHHHH
Q 018280 252 IVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 252 ivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
+|-.+.|-.+|..-||||++..|--..
T Consensus 2 iv~k~~v~~~G~eCnKIGvs~~~f~~q 28 (49)
T PF10699_consen 2 IVDKSLVDLDGLECNKIGVSYEAFRNQ 28 (49)
T ss_pred ccchhhccCCCCccCcceeCHHHHHhc
Confidence 566677888999999999998876544
No 300
>PRK09411 carbamate kinase; Reviewed
Probab=20.59 E-value=3.2e+02 Score=26.69 Aligned_cols=60 Identities=15% Similarity=0.034 Sum_probs=31.4
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-----eeEEEEecCCCCCcchHHHHHHHHhCCC
Q 018280 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-----LERAYCSETRPFNQGSRLTAFELVHDRI 229 (358)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~-----~~~V~v~EsrP~~qG~rlta~eL~~~GI 229 (358)
++-++++. +...|+||+|. -=.+.|....+..+ .+.|...||-=+ =|.- ...+|...|+
T Consensus 34 ~~ia~l~~-----~~~~vitHGNG---------PQVG~l~~~~~~~~~~~~~pld~~~a~sqG~-iGy~-l~q~l~~~~~ 97 (297)
T PRK09411 34 PALARLAR-----SYRLAIVHGNG---------PQVGLLALQNLAWKEVEPYPLDVLVAESQGM-IGYM-LAQSLSAQPQ 97 (297)
T ss_pred HHHHHHHH-----cCCEEEEeCCc---------cHHHHHHHHHHhhcCCCCCCchhhhhhcccH-HHHH-HHHHHHHcCC
Confidence 33455665 45899999993 44455543333222 233333343211 1443 3667887776
Q ss_pred C
Q 018280 230 P 230 (358)
Q Consensus 230 ~ 230 (358)
+
T Consensus 98 ~ 98 (297)
T PRK09411 98 M 98 (297)
T ss_pred C
Confidence 4
No 301
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.56 E-value=8.3e+02 Score=24.12 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=37.3
Q ss_pred HHHHHHhCC--CCeEEEc----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 220 TAFELVHDR--IPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 220 ta~eL~~~G--I~vtlI~----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
.++.|.+.+ +.++.+. ...+..++ +++|.||.+.|.+ ---+.+.-+|+.++|||+..+
T Consensus 87 a~~~l~~~np~v~v~~~~~~i~~~~~~~~~--~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 87 AREAMLALNPDVKVTVSVRRLTWSNALDEL--RDADVILDGSDNF---------DTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred HHHHHHHHCCCcEEEEEEeecCHHHHHHHH--hCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 345566543 4544432 22233456 7899999998754 223567778999999998653
No 302
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=20.49 E-value=4.4e+02 Score=21.02 Aligned_cols=48 Identities=6% Similarity=-0.046 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHC-CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc
Q 018280 187 GTALGVIRALHSE-GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (358)
Q Consensus 187 ~ta~~~l~~a~~~-g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~ 235 (358)
......|....++ ...++|+|++..+..+-... ..++.+.+.+++++.
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~-~~~~~~~~~~i~~i~ 59 (169)
T PF00535_consen 11 EYLERTLESLLKQTDPDFEIIVVDDGSTDETEEI-LEEYAESDPNIRYIR 59 (169)
T ss_dssp TTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHH-HHHHHCCSTTEEEEE
T ss_pred HHHHHHHHHHhhccCCCEEEEEeccccccccccc-ccccccccccccccc
Confidence 4556667666555 56788888887774433333 445555567777765
No 303
>PRK06234 methionine gamma-lyase; Provisional
Probab=20.36 E-value=8.6e+02 Score=24.22 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=43.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHHhCCCCeEEEcch---HHHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~eL~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
++....+.|. +|++.. |.+.+.. +....+...|+++.++.-. .+...+ +++..+|++- ...|.
T Consensus 95 al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i-~~~tklI~ie--------sP~NP 161 (400)
T PRK06234 95 SLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNAL-KANTKVVYLE--------TPANP 161 (400)
T ss_pred HHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHh-ccCCeEEEEE--------CCCCC
Confidence 4444444454 566554 5554322 2233456789998887532 222233 1344444432 13344
Q ss_pred ccc----HHHHHHHHhc--CCeEEE
Q 018280 268 IGT----YSLALCAKFH--NILFYV 286 (358)
Q Consensus 268 iGT----~~lA~~Ak~~--~iPvyV 286 (358)
.|. -.++-+||.| |++++|
T Consensus 162 tG~v~dl~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 162 TLKVTDIKAISNIAHENNKECLVFV 186 (400)
T ss_pred CCCcCCHHHHHHHHHhcCCCCEEEE
Confidence 444 3577788887 787765
No 304
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.16 E-value=7.1e+02 Score=23.16 Aligned_cols=32 Identities=22% Similarity=0.093 Sum_probs=27.0
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (358)
++.+++.|+++..|+|+....+- +..|.++..
T Consensus 195 ~~~ak~~ga~iI~IT~~~~s~la--~~ad~~l~~ 226 (278)
T PRK11557 195 ADEALRVGAKVLAITGFTPNALQ--QRASHCLYT 226 (278)
T ss_pred HHHHHHcCCCEEEEcCCCCCchH--HhCCEEEEe
Confidence 66788999999999999888777 678888864
No 305
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=20.14 E-value=4.4e+02 Score=25.21 Aligned_cols=94 Identities=16% Similarity=0.058 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcC-----CcCEE
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDG-----RVSAV 251 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~-----~vd~V 251 (358)
+..+..+..+.+.+..-.|++.+ |...+.. ..+...|+++..++ ...+-..+++. +..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~vlv~~--P~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 152 (363)
T PF00155_consen 78 QAALFLLLRLLKINPGDTVLVPD--PCYPSYI---EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAV 152 (363)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEEE--SSSTHHH---HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEE
T ss_pred ccchhhhhhcccccccccceecC--Ccccccc---ccccccCceeeecccccccccccccccccccccccccccccccee
Confidence 34455444444322233455543 7776543 23556677766666 34444445332 23444
Q ss_pred EEcceeeecCCceecccccHHHHHHHHhcCCeEEE
Q 018280 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 252 ivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
++. .-=-+.|.++.+-=--.++-.|++|++.+++
T Consensus 153 ~~~-~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 153 LIC-NPNNPTGSVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp EEE-SSBTTTTBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred eec-ccccccccccccccccchhhhhcccccceee
Confidence 432 1111233333333334466679999999886
No 306
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=20.12 E-value=1.5e+02 Score=24.44 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCe-eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhh
Q 018280 191 GVIRALHSEGVL-ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMK 244 (358)
Q Consensus 191 ~~l~~a~~~g~~-~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~ 244 (358)
..|.++...|.. +.||-.|+.|...+. .+ ...+.|||+.++.-+-+--+.+
T Consensus 38 EPL~~~i~AGvefieVYg~~~~p~~~~l--l~-~c~~r~Ipvrlv~~~v~N~lFk 89 (115)
T PF04705_consen 38 EPLTHSIRAGVEFIEVYGSDGSPVPPEL--LA-ACRQRGIPVRLVDSAVVNQLFK 89 (115)
T ss_dssp HHHHHHHCTT-EEEEEEEETTS---CCC--CH-HHHCTT--EEEE-HHHHCCCS-
T ss_pred hHHHHHHhcCcEEEEEeeecCCCCChHH--HH-HHHhcCCceEEecHHHHHHHHh
Confidence 467777778875 569999999997653 33 4778999999986555444443
No 307
>PRK11778 putative inner membrane peptidase; Provisional
Probab=20.03 E-value=8.6e+02 Score=24.09 Aligned_cols=82 Identities=21% Similarity=0.166 Sum_probs=45.7
Q ss_pred EEEEecCCCCCc--chHHHHH---HHHhCCCCeEEEcch---HHHHhhhcCCcCEEEEcceeeecCCceecccccH----
Q 018280 204 RAYCSETRPFNQ--GSRLTAF---ELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTANKIGTY---- 271 (358)
Q Consensus 204 ~V~v~EsrP~~q--G~rlta~---eL~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~---- 271 (358)
.|++.=..|... |..+.+. ++++.|+|++...|. +.+|+|+ .-+|.++..-.+ .+.-+|-.
T Consensus 125 aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA-saAD~I~A~P~a------~vGSIGVi~~~~ 197 (330)
T PRK11778 125 EVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA-CVADKIIAAPFA------IVGSIGVVAQIP 197 (330)
T ss_pred eEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH-HhCCEEEECCCC------eEEeeeeeeecc
Confidence 455555567653 3333333 467789999986653 3457663 455666554333 33333332
Q ss_pred HHHHHHHhcCCeEEEe-ccCcc
Q 018280 272 SLALCAKFHNILFYVA-APLTS 292 (358)
Q Consensus 272 ~lA~~Ak~~~iPvyV~-a~~~k 292 (358)
.+.=+-+.+||-+-+. +..||
T Consensus 198 ~~~~lLeKlGI~~evi~aG~yK 219 (330)
T PRK11778 198 NFHRLLKKHDIDVELHTAGEYK 219 (330)
T ss_pred CHHHHHHHCCCceEEEEecCcc
Confidence 2233456789988865 34444
Done!