Query 018280
Match_columns 358
No_of_seqs 248 out of 1440
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvk_A Methylthioribose-1-phos 100.0 4E-100 1E-104 749.8 31.3 337 7-357 22-359 (374)
2 1t5o_A EIF2BD, translation ini 100.0 1.5E-98 5E-103 734.1 33.5 329 12-357 2-330 (351)
3 2a0u_A Initiation factor 2B; S 100.0 9.1E-98 3E-102 735.0 38.1 348 6-356 9-367 (383)
4 1t9k_A Probable methylthioribo 100.0 6.8E-98 2E-102 728.4 33.6 328 13-357 7-334 (347)
5 3a11_A Translation initiation 100.0 8E-85 2.7E-89 635.4 30.8 302 34-357 14-316 (338)
6 1vb5_A Translation initiation 100.0 3.6E-73 1.2E-77 540.3 25.5 269 41-357 4-272 (276)
7 3ecs_A Translation initiation 100.0 8.3E-69 2.8E-73 516.5 20.7 274 59-357 20-294 (315)
8 1w2w_B 5-methylthioribose-1-ph 100.0 5.9E-55 2E-59 393.4 11.4 158 200-357 2-180 (191)
9 1w2w_A 5-methylthioribose-1-ph 100.0 4E-47 1.4E-51 345.5 18.4 188 12-203 2-208 (211)
10 1uj6_A Ribose 5-phosphate isom 98.3 2.4E-06 8.3E-11 78.4 9.6 129 148-309 7-142 (227)
11 1m0s_A Ribose-5-phosphate isom 97.7 0.00011 3.8E-09 66.9 8.9 131 148-307 5-136 (219)
12 3kwm_A Ribose-5-phosphate isom 97.7 0.00019 6.6E-09 65.5 10.4 130 148-307 11-141 (224)
13 2f8m_A Ribose 5-phosphate isom 97.7 0.00034 1.2E-08 64.7 12.0 131 147-307 10-148 (244)
14 1lk5_A D-ribose-5-phosphate is 97.7 0.00021 7.2E-09 65.5 10.3 130 148-307 5-140 (229)
15 1o8b_A Ribose 5-phosphate isom 97.4 9.6E-05 3.3E-09 67.3 4.8 129 149-307 6-135 (219)
16 3l7o_A Ribose-5-phosphate isom 97.4 0.00089 3E-08 61.1 10.2 128 149-307 4-136 (225)
17 3hhe_A Ribose-5-phosphate isom 97.3 0.0013 4.3E-08 61.1 10.0 128 149-307 27-158 (255)
18 2pjm_A Ribose-5-phosphate isom 97.0 0.0054 1.8E-07 56.0 11.8 128 149-307 6-139 (226)
19 1xtz_A Ribose-5-phosphate isom 96.9 0.0048 1.6E-07 57.6 10.2 131 149-307 21-165 (264)
20 3uw1_A Ribose-5-phosphate isom 96.9 0.0062 2.1E-07 56.0 10.6 132 150-307 15-147 (239)
21 2yvq_A Carbamoyl-phosphate syn 86.6 2.3 7.7E-05 35.4 7.7 81 190-286 40-130 (143)
22 4gmk_A Ribose-5-phosphate isom 86.4 2.1 7.3E-05 38.7 7.9 123 149-306 7-138 (228)
23 1b93_A Protein (methylglyoxal 84.6 2.1 7.3E-05 36.3 6.6 74 202-287 39-119 (152)
24 1poi_B Glutaconate coenzyme A- 84.6 2.5 8.4E-05 39.0 7.6 95 149-265 7-116 (260)
25 3rrl_B Succinyl-COA:3-ketoacid 83.2 1.4 4.9E-05 39.2 5.2 98 150-266 2-111 (207)
26 3ixq_A Ribose-5-phosphate isom 81.4 4.6 0.00016 36.5 7.9 129 150-307 7-139 (226)
27 1vmd_A MGS, methylglyoxal synt 75.2 5.2 0.00018 34.8 6.0 74 202-287 55-135 (178)
28 2xw6_A MGS, methylglyoxal synt 74.0 5.3 0.00018 33.1 5.6 74 202-287 31-111 (134)
29 3tqr_A Phosphoribosylglycinami 71.1 11 0.00039 33.5 7.5 71 185-259 14-96 (215)
30 2oas_A ATOA, 4-hydroxybutyrate 70.6 42 0.0014 32.9 12.2 88 241-356 293-392 (436)
31 3s3t_A Nucleotide-binding prot 70.4 36 0.0012 26.6 10.4 61 223-287 77-145 (146)
32 2lpm_A Two-component response 69.5 5.5 0.00019 32.1 4.6 80 200-289 6-87 (123)
33 3d3u_A 4-hydroxybutyrate COA-t 68.2 52 0.0018 32.2 12.3 81 249-356 307-398 (439)
34 3k6m_A Succinyl-COA:3-ketoacid 65.6 14 0.00046 37.1 7.5 102 148-267 261-374 (481)
35 2hj0_A Putative citrate lyase, 64.0 56 0.0019 32.9 11.8 74 246-355 365-449 (519)
36 4ds3_A Phosphoribosylglycinami 63.7 13 0.00046 32.9 6.4 71 185-259 16-99 (209)
37 3i6i_A Putative leucoanthocyan 63.7 27 0.00094 32.1 8.9 102 170-287 11-117 (346)
38 3dqp_A Oxidoreductase YLBE; al 62.7 13 0.00044 31.8 6.0 51 238-290 56-106 (219)
39 3eh7_A 4-hydroxybutyrate COA-t 61.8 88 0.003 30.7 12.5 19 338-356 383-401 (434)
40 3e8x_A Putative NAD-dependent 59.5 25 0.00086 30.3 7.4 107 168-291 20-132 (236)
41 1wv2_A Thiazole moeity, thiazo 59.2 30 0.001 31.9 7.9 114 168-292 72-198 (265)
42 2gm3_A Unknown protein; AT3G01 59.0 17 0.00058 29.9 5.9 65 224-292 96-166 (175)
43 3f6p_A Transcriptional regulat 58.9 20 0.00068 27.1 6.0 79 203-290 3-82 (120)
44 3qli_A Coenzyme A transferase; 58.2 1.4E+02 0.0046 29.6 13.1 85 242-355 325-420 (455)
45 3da8_A Probable 5'-phosphoribo 58.0 19 0.00066 32.0 6.4 71 185-259 21-102 (215)
46 3rsc_A CALG2; TDP, enediyne, s 57.9 24 0.00083 33.0 7.5 83 190-293 38-152 (415)
47 3cwc_A Putative glycerate kina 57.7 5.4 0.00019 38.8 2.8 47 246-294 286-332 (383)
48 1meo_A Phosophoribosylglycinam 57.5 23 0.00079 31.2 6.8 71 185-259 9-92 (209)
49 3kcq_A Phosphoribosylglycinami 56.1 22 0.00075 31.6 6.4 71 185-259 17-95 (215)
50 3ia7_A CALG4; glycosysltransfe 55.7 26 0.00089 32.4 7.3 83 190-293 22-136 (402)
51 3hgm_A Universal stress protei 54.6 30 0.001 27.1 6.5 61 223-287 78-147 (147)
52 4egb_A DTDP-glucose 4,6-dehydr 54.2 21 0.00071 32.7 6.2 113 168-290 23-149 (346)
53 1jw9_B Molybdopterin biosynthe 54.1 33 0.0011 30.7 7.4 110 153-288 21-153 (249)
54 3ic5_A Putative saccharopine d 53.9 65 0.0022 23.9 9.7 95 169-290 5-102 (118)
55 3p9x_A Phosphoribosylglycinami 53.6 40 0.0014 29.8 7.6 71 185-260 11-95 (211)
56 1mjh_A Protein (ATP-binding do 53.6 35 0.0012 27.3 6.9 61 224-288 92-158 (162)
57 2dum_A Hypothetical protein PH 52.9 25 0.00087 28.5 6.0 61 224-288 87-155 (170)
58 3tsa_A SPNG, NDP-rhamnosyltran 51.8 28 0.00095 32.3 6.8 34 242-288 109-142 (391)
59 1jmv_A USPA, universal stress 51.2 82 0.0028 24.3 9.0 58 224-287 73-136 (141)
60 3sho_A Transcriptional regulat 50.5 1.1E+02 0.0036 25.3 10.5 62 221-289 58-122 (187)
61 3rht_A (gatase1)-like protein; 50.4 11 0.00037 34.6 3.5 81 204-293 6-91 (259)
62 3dlo_A Universal stress protei 49.9 48 0.0016 26.8 7.2 62 223-287 86-154 (155)
63 2pln_A HP1043, response regula 49.7 52 0.0018 25.1 7.2 80 199-291 15-96 (137)
64 3eod_A Protein HNR; response r 48.4 56 0.0019 24.6 7.1 82 201-291 6-89 (130)
65 3gt7_A Sensor protein; structu 48.2 48 0.0016 26.1 6.9 82 201-291 6-91 (154)
66 3rrl_A Succinyl-COA:3-ketoacid 48.1 33 0.0011 30.8 6.3 21 247-267 151-171 (235)
67 2yv1_A Succinyl-COA ligase [AD 47.7 16 0.00055 33.9 4.3 96 187-287 81-180 (294)
68 4fzr_A SSFS6; structural genom 47.5 37 0.0013 31.6 6.9 55 168-235 14-69 (398)
69 3h4t_A Glycosyltransferase GTF 47.5 24 0.00081 33.5 5.6 16 274-289 109-124 (404)
70 1jkx_A GART;, phosphoribosylgl 46.8 51 0.0017 29.0 7.3 71 185-259 9-92 (212)
71 3i42_A Response regulator rece 46.4 41 0.0014 25.3 5.9 81 202-291 3-87 (127)
72 3h5i_A Response regulator/sens 46.3 63 0.0022 24.8 7.2 83 202-292 5-89 (140)
73 2z5l_A Tylkr1, tylactone synth 46.3 81 0.0028 31.4 9.5 97 192-290 275-391 (511)
74 3grc_A Sensor protein, kinase; 46.2 49 0.0017 25.3 6.5 81 202-291 6-90 (140)
75 2ri0_A Glucosamine-6-phosphate 46.2 1.2E+02 0.0041 26.4 9.8 81 187-270 38-139 (234)
76 3tnj_A Universal stress protei 45.7 1E+02 0.0036 23.9 9.4 42 242-287 104-145 (150)
77 2yv2_A Succinyl-COA synthetase 45.7 20 0.00069 33.2 4.6 104 170-286 73-180 (297)
78 3mje_A AMPHB; rossmann fold, o 44.9 53 0.0018 32.7 7.8 98 192-290 255-375 (496)
79 1qkk_A DCTD, C4-dicarboxylate 44.8 38 0.0013 26.6 5.7 81 202-291 3-85 (155)
80 2rjn_A Response regulator rece 44.5 51 0.0017 25.8 6.4 83 201-292 6-90 (154)
81 1zgz_A Torcad operon transcrip 44.4 63 0.0022 23.9 6.7 79 203-290 3-82 (122)
82 3qli_A Coenzyme A transferase; 44.3 52 0.0018 32.6 7.5 96 155-265 30-158 (455)
83 4ggj_A Mitochondrial cardiolip 43.5 35 0.0012 29.3 5.6 47 188-236 73-119 (196)
84 3cpq_A 50S ribosomal protein L 43.4 24 0.00081 27.7 4.1 38 242-287 32-69 (110)
85 3otg_A CALG1; calicheamicin, T 43.2 1.3E+02 0.0043 27.8 10.0 55 169-236 20-75 (412)
86 1oi7_A Succinyl-COA synthetase 42.8 18 0.0006 33.5 3.7 96 187-287 75-174 (288)
87 2qzj_A Two-component response 42.6 57 0.002 25.0 6.4 81 202-291 4-85 (136)
88 2wm3_A NMRA-like family domain 41.8 1.1E+02 0.0037 27.1 8.9 108 170-291 6-116 (299)
89 3snk_A Response regulator CHEY 41.2 49 0.0017 25.2 5.7 83 200-291 12-97 (135)
90 3kto_A Response regulator rece 40.9 38 0.0013 26.0 5.0 84 202-292 6-91 (136)
91 2jl1_A Triphenylmethane reduct 40.9 54 0.0019 28.8 6.7 89 192-290 16-107 (287)
92 3llv_A Exopolyphosphatase-rela 40.5 49 0.0017 26.0 5.7 78 192-287 21-101 (141)
93 2qxy_A Response regulator; reg 39.7 65 0.0022 24.6 6.3 80 202-291 4-85 (142)
94 2a9o_A Response regulator; ess 39.6 68 0.0023 23.5 6.2 78 204-290 3-81 (120)
95 1xhf_A DYE resistance, aerobic 38.9 95 0.0032 22.9 7.0 79 203-290 4-83 (123)
96 1qyd_A Pinoresinol-lariciresin 38.7 1.3E+02 0.0043 26.7 8.9 103 170-287 5-114 (313)
97 2zay_A Response regulator rece 38.4 63 0.0021 24.9 6.0 83 200-291 6-92 (147)
98 2nu8_A Succinyl-COA ligase [AD 38.1 30 0.001 31.8 4.5 104 170-286 66-173 (288)
99 4dad_A Putative pilus assembly 37.7 23 0.00078 27.6 3.2 83 200-291 18-105 (146)
100 3n0v_A Formyltetrahydrofolate 36.9 64 0.0022 29.8 6.5 70 185-260 99-180 (286)
101 3cg4_A Response regulator rece 36.8 77 0.0026 24.1 6.3 82 201-291 6-91 (142)
102 1byr_A Protein (endonuclease); 36.7 90 0.0031 24.8 6.8 48 188-235 41-88 (155)
103 2fr1_A Erythromycin synthase, 36.6 1.4E+02 0.0048 29.3 9.5 97 192-290 242-361 (486)
104 3m6m_D Sensory/regulatory prot 36.0 44 0.0015 26.1 4.7 81 201-290 13-99 (143)
105 2rdm_A Response regulator rece 35.9 80 0.0027 23.6 6.1 82 202-291 5-89 (132)
106 3lk7_A UDP-N-acetylmuramoylala 35.8 1.5E+02 0.005 28.7 9.3 55 193-255 25-80 (451)
107 3fdx_A Putative filament prote 35.7 55 0.0019 25.3 5.3 41 242-287 101-142 (143)
108 3hv2_A Response regulator/HD d 35.5 73 0.0025 24.9 6.0 83 200-291 12-96 (153)
109 2j48_A Two-component sensor ki 35.1 63 0.0022 23.3 5.3 79 204-291 3-85 (119)
110 3trj_A Phosphoheptose isomeras 34.9 2.1E+02 0.0071 24.3 13.1 37 246-289 113-149 (201)
111 3cnb_A DNA-binding response re 34.9 94 0.0032 23.5 6.5 82 201-291 7-94 (143)
112 3lou_A Formyltetrahydrofolate 34.6 63 0.0021 29.9 6.1 70 185-260 104-185 (292)
113 3ruf_A WBGU; rossmann fold, UD 34.6 1.7E+02 0.0057 26.4 9.1 110 168-290 24-151 (351)
114 2oas_A ATOA, 4-hydroxybutyrate 34.4 81 0.0028 30.8 7.2 97 155-266 10-129 (436)
115 3fg9_A Protein of universal st 34.1 1.7E+02 0.0058 22.9 8.7 60 224-287 88-155 (156)
116 3loq_A Universal stress protei 34.0 1.6E+02 0.0055 26.0 8.7 89 196-288 194-289 (294)
117 3hdv_A Response regulator; PSI 33.9 91 0.0031 23.5 6.2 82 201-291 6-91 (136)
118 3dhn_A NAD-dependent epimerase 33.9 75 0.0026 26.8 6.2 86 192-290 20-112 (227)
119 1ydm_A Hypothetical protein YQ 33.5 2.2E+02 0.0075 24.0 11.0 93 168-271 40-139 (187)
120 2r6j_A Eugenol synthase 1; phe 33.4 1.3E+02 0.0044 26.9 8.0 97 171-287 13-113 (318)
121 3t6k_A Response regulator rece 33.4 1.1E+02 0.0036 23.4 6.6 81 202-291 4-88 (136)
122 3mt0_A Uncharacterized protein 33.4 2.5E+02 0.0085 24.6 10.6 95 192-292 27-131 (290)
123 3nbm_A PTS system, lactose-spe 33.4 25 0.00084 27.7 2.6 51 226-287 32-84 (108)
124 2zcu_A Uncharacterized oxidore 33.4 1E+02 0.0036 26.8 7.3 86 192-290 15-104 (286)
125 2ahu_A Putative enzyme YDIF; C 33.3 49 0.0017 33.4 5.5 179 150-357 288-476 (531)
126 3gl9_A Response regulator; bet 33.1 1E+02 0.0035 23.0 6.3 79 203-290 3-85 (122)
127 3ixl_A Amdase, arylmalonate de 33.1 1.7E+02 0.0058 25.8 8.6 84 189-286 105-210 (240)
128 4gx0_A TRKA domain protein; me 32.7 52 0.0018 32.8 5.6 72 203-288 349-440 (565)
129 3nhm_A Response regulator; pro 32.7 1.3E+02 0.0045 22.4 6.9 80 202-291 4-87 (133)
130 1o1y_A Conserved hypothetical 32.6 62 0.0021 28.6 5.6 87 200-289 10-101 (239)
131 3cvj_A Putative phosphoheptose 32.3 2.5E+02 0.0084 24.3 10.9 31 221-253 128-169 (243)
132 1tq8_A Hypothetical protein RV 32.3 87 0.003 25.3 6.1 61 223-287 89-156 (163)
133 3g0t_A Putative aminotransfera 32.2 89 0.0031 29.2 7.0 77 198-287 129-221 (437)
134 3m2p_A UDP-N-acetylglucosamine 31.5 59 0.002 29.1 5.3 84 192-289 18-108 (311)
135 3isl_A Purine catabolism prote 31.3 3E+02 0.01 25.0 12.3 87 192-287 78-172 (416)
136 2hj0_A Putative citrate lyase, 31.3 4.1E+02 0.014 26.5 13.2 120 156-288 54-207 (519)
137 2x4g_A Nucleoside-diphosphate- 31.3 85 0.0029 28.2 6.4 103 170-290 14-126 (342)
138 3dzz_A Putative pyridoxal 5'-p 31.3 1.4E+02 0.0049 27.0 8.1 78 204-287 111-199 (391)
139 1dbw_A Transcriptional regulat 31.1 1.5E+02 0.0051 21.9 7.0 79 203-290 4-84 (126)
140 2jba_A Phosphate regulon trans 31.1 92 0.0031 23.0 5.7 80 203-291 3-86 (127)
141 3av3_A Phosphoribosylglycinami 30.9 1.4E+02 0.0047 26.0 7.5 68 187-259 14-95 (212)
142 3auf_A Glycinamide ribonucleot 30.9 1.3E+02 0.0044 26.7 7.3 69 187-260 33-115 (229)
143 3hdg_A Uncharacterized protein 30.7 73 0.0025 24.1 5.1 82 201-291 6-89 (137)
144 3idf_A USP-like protein; unive 30.6 63 0.0021 24.9 4.7 59 223-287 74-137 (138)
145 3mjf_A Phosphoribosylamine--gl 30.6 37 0.0013 32.8 4.0 74 169-257 3-77 (431)
146 4b4o_A Epimerase family protei 30.5 70 0.0024 28.5 5.6 18 266-283 82-99 (298)
147 3kht_A Response regulator; PSI 30.4 1.3E+02 0.0045 22.9 6.7 82 201-291 4-91 (144)
148 1oc2_A DTDP-glucose 4,6-dehydr 30.3 48 0.0016 30.1 4.5 93 192-289 20-125 (348)
149 1zh2_A KDP operon transcriptio 30.2 1E+02 0.0035 22.5 5.8 78 204-290 3-81 (121)
150 3dfz_A SIRC, precorrin-2 dehyd 30.1 71 0.0024 28.3 5.4 92 168-287 30-121 (223)
151 3j21_Z 50S ribosomal protein L 30.1 50 0.0017 25.2 3.9 38 242-287 26-63 (99)
152 3cg0_A Response regulator rece 29.9 61 0.0021 24.6 4.5 84 200-291 7-92 (140)
153 3s2u_A UDP-N-acetylglucosamine 29.9 84 0.0029 29.3 6.3 81 189-287 19-121 (365)
154 1a9x_A Carbamoyl phosphate syn 29.8 66 0.0023 35.2 6.2 62 220-287 977-1043(1073)
155 2ywr_A Phosphoribosylglycinami 29.8 1.2E+02 0.004 26.5 6.8 70 187-260 12-94 (216)
156 3heb_A Response regulator rece 29.6 1.8E+02 0.006 22.4 7.4 82 202-292 4-100 (152)
157 3l9w_A Glutathione-regulated p 29.6 66 0.0023 31.1 5.6 86 185-288 11-102 (413)
158 2qr3_A Two-component system re 29.6 57 0.0019 24.8 4.3 85 202-291 3-90 (140)
159 1mvo_A PHOP response regulator 29.6 1.2E+02 0.0041 22.7 6.2 79 203-290 4-84 (136)
160 4id9_A Short-chain dehydrogena 29.4 73 0.0025 28.9 5.7 99 169-290 19-126 (347)
161 2fp4_A Succinyl-COA ligase [GD 29.1 45 0.0015 31.0 4.1 96 187-287 82-182 (305)
162 1to6_A Glycerate kinase; glyce 29.1 26 0.00089 33.8 2.5 49 241-294 274-322 (371)
163 3rqi_A Response regulator prot 29.0 1.4E+02 0.0048 24.2 6.9 81 202-291 7-89 (184)
164 1qyc_A Phenylcoumaran benzylic 28.8 1.8E+02 0.0062 25.5 8.2 99 170-287 5-111 (308)
165 2pl1_A Transcriptional regulat 28.8 1.1E+02 0.0038 22.3 5.7 78 204-290 2-81 (121)
166 1yio_A Response regulatory pro 28.7 1.5E+02 0.0051 24.4 7.1 80 203-291 5-86 (208)
167 3i16_A Aluminum resistance pro 28.7 2.6E+02 0.0088 26.9 9.7 60 224-287 144-218 (427)
168 1xr4_A Putative citrate lyase 28.5 3.9E+02 0.013 26.6 11.1 120 155-287 50-203 (509)
169 2gas_A Isoflavone reductase; N 28.3 2.5E+02 0.0086 24.5 9.0 56 223-287 51-110 (307)
170 1y8q_A Ubiquitin-like 1 activa 28.1 3.7E+02 0.013 25.0 13.6 110 153-287 26-156 (346)
171 2o8r_A Polyphosphate kinase; s 28.0 67 0.0023 33.7 5.5 47 187-234 384-432 (705)
172 1qo0_D AMIR; binding protein, 27.9 40 0.0014 27.9 3.2 78 201-291 11-89 (196)
173 3h2s_A Putative NADH-flavin re 27.9 91 0.0031 26.1 5.7 88 191-289 15-105 (224)
174 2w48_A Sorbitol operon regulat 27.5 89 0.003 28.7 5.9 97 149-256 91-213 (315)
175 3o1l_A Formyltetrahydrofolate 27.4 1.5E+02 0.005 27.6 7.3 70 185-260 114-195 (302)
176 2z08_A Universal stress protei 26.7 94 0.0032 23.9 5.2 43 241-287 93-136 (137)
177 3mm4_A Histidine kinase homolo 26.7 1.4E+02 0.0047 25.0 6.6 81 201-290 60-160 (206)
178 3lua_A Response regulator rece 26.6 1.2E+02 0.004 23.0 5.7 82 202-291 4-91 (140)
179 1m3s_A Hypothetical protein YC 26.5 1.1E+02 0.0037 25.3 5.8 60 221-290 56-115 (186)
180 2gkg_A Response regulator homo 26.3 90 0.0031 22.9 4.8 79 203-290 6-88 (127)
181 2bfw_A GLGA glycogen synthase; 26.2 2E+02 0.007 23.2 7.5 103 168-287 35-145 (200)
182 3lp8_A Phosphoribosylamine-gly 25.8 56 0.0019 31.7 4.3 76 168-259 20-95 (442)
183 3foj_A Uncharacterized protein 25.6 92 0.0032 23.0 4.7 46 168-231 55-100 (100)
184 1w41_A 50S ribosomal protein L 25.5 52 0.0018 25.2 3.2 37 243-287 28-64 (101)
185 3ehe_A UDP-glucose 4-epimerase 25.4 70 0.0024 28.6 4.7 53 236-290 54-114 (313)
186 3lqk_A Dipicolinate synthase s 25.2 87 0.003 27.3 5.0 107 175-287 12-129 (201)
187 1hdo_A Biliverdin IX beta redu 25.2 1.1E+02 0.0037 25.0 5.5 90 191-291 18-112 (206)
188 3c1o_A Eugenol synthase; pheny 25.1 3.5E+02 0.012 23.8 9.5 99 170-287 5-111 (321)
189 2oqr_A Sensory transduction pr 25.0 1.3E+02 0.0043 25.3 6.1 80 203-291 5-85 (230)
190 1qgn_A Protein (cystathionine 24.9 1.6E+02 0.0055 28.5 7.4 86 192-286 145-235 (445)
191 3fxa_A SIS domain protein; str 24.9 74 0.0025 26.8 4.4 60 221-289 64-127 (201)
192 1kgs_A DRRD, DNA binding respo 24.8 1.7E+02 0.0058 24.3 6.9 81 203-292 3-85 (225)
193 1lc5_A COBD, L-threonine-O-3-p 24.7 1.3E+02 0.0044 27.3 6.5 78 204-287 100-185 (364)
194 3kax_A Aminotransferase, class 24.5 2.3E+02 0.0078 25.5 8.2 87 192-287 98-195 (383)
195 3e48_A Putative nucleoside-dip 24.5 97 0.0033 27.2 5.4 51 237-291 57-107 (289)
196 2ydy_A Methionine adenosyltran 24.4 81 0.0028 28.1 4.9 53 239-291 52-112 (315)
197 1e6u_A GDP-fucose synthetase; 24.2 9.8 0.00033 34.5 -1.5 27 265-291 82-108 (321)
198 1k68_A Phytochrome response re 23.9 2E+02 0.0068 21.3 6.6 80 203-291 3-95 (140)
199 2xhz_A KDSD, YRBH, arabinose 5 23.9 1.3E+02 0.0044 24.7 5.7 61 221-290 68-132 (183)
200 1jbe_A Chemotaxis protein CHEY 23.8 2.1E+02 0.0071 21.0 6.6 81 201-290 3-88 (128)
201 4f2d_A L-arabinose isomerase; 23.8 5.4E+02 0.018 25.4 12.4 77 170-255 74-183 (500)
202 3qjg_A Epidermin biosynthesis 23.7 46 0.0016 28.5 2.8 101 178-287 13-116 (175)
203 2cb1_A O-acetyl homoserine sul 23.7 3.6E+02 0.012 25.0 9.6 76 203-286 96-175 (412)
204 3r0j_A Possible two component 23.6 1.6E+02 0.0054 25.3 6.5 83 200-291 21-105 (250)
205 3eme_A Rhodanese-like domain p 23.6 1.1E+02 0.0039 22.6 4.9 46 168-231 55-100 (103)
206 3lte_A Response regulator; str 23.6 2.2E+02 0.0076 20.9 6.8 54 201-256 5-59 (132)
207 1tt5_A APPBP1, amyloid protein 23.6 5.5E+02 0.019 25.5 11.8 109 153-287 22-155 (531)
208 3ilh_A Two component response 23.5 2.3E+02 0.008 21.1 7.5 84 199-291 6-102 (146)
209 2ejb_A Probable aromatic acid 23.5 99 0.0034 26.6 5.0 94 189-287 17-124 (189)
210 2vyc_A Biodegradative arginine 23.5 1.7E+02 0.0057 30.6 7.7 86 204-292 2-96 (755)
211 2hqr_A Putative transcriptiona 23.4 1.8E+02 0.0062 24.2 6.8 75 204-291 2-78 (223)
212 1mio_A Nitrogenase molybdenum 23.4 5.6E+02 0.019 25.5 14.2 33 239-287 448-480 (533)
213 1m3s_A Hypothetical protein YC 23.3 2.2E+02 0.0075 23.3 7.2 32 221-254 99-130 (186)
214 3a10_A Response regulator; pho 23.2 2E+02 0.0068 20.7 6.3 78 204-290 3-82 (116)
215 3lkv_A Uncharacterized conserv 23.2 86 0.0029 28.3 4.8 57 224-289 165-228 (302)
216 1x92_A APC5045, phosphoheptose 23.0 3.2E+02 0.011 22.5 11.2 32 221-254 133-167 (199)
217 1jeo_A MJ1247, hypothetical pr 23.0 1.3E+02 0.0044 24.6 5.6 91 189-292 30-120 (180)
218 3o6p_A Peptide ABC transporter 22.9 90 0.0031 26.7 4.7 66 189-254 83-156 (229)
219 2xhz_A KDSD, YRBH, arabinose 5 22.9 2.1E+02 0.0071 23.3 6.9 33 221-255 116-148 (183)
220 3crn_A Response regulator rece 22.8 1.8E+02 0.0061 21.8 6.1 79 203-290 4-84 (132)
221 3oti_A CALG3; calicheamicin, T 22.8 1.2E+02 0.004 28.1 5.8 54 170-236 21-74 (398)
222 2gwr_A DNA-binding response re 22.5 1.2E+02 0.0042 25.7 5.5 80 203-291 6-86 (238)
223 3c3m_A Response regulator rece 22.4 2E+02 0.007 21.6 6.4 79 203-290 4-86 (138)
224 3mcu_A Dipicolinate synthase, 22.4 2.4E+02 0.0082 24.6 7.4 109 173-287 8-127 (207)
225 2z61_A Probable aspartate amin 22.4 2.2E+02 0.0075 25.7 7.6 82 192-286 105-188 (370)
226 1xq6_A Unknown protein; struct 22.4 3E+02 0.01 23.0 8.1 106 169-290 4-133 (253)
227 1fmt_A Methionyl-tRNA FMet for 22.3 3.4E+02 0.012 25.0 8.8 71 189-259 15-94 (314)
228 3sc6_A DTDP-4-dehydrorhamnose 22.2 33 0.0011 30.3 1.7 44 247-290 56-107 (287)
229 3hzh_A Chemotaxis response reg 22.2 1.2E+02 0.0041 23.8 5.0 82 200-290 34-120 (157)
230 2b4a_A BH3024; flavodoxin-like 22.1 2.1E+02 0.0072 21.4 6.4 82 200-290 13-98 (138)
231 3jte_A Response regulator rece 22.1 1.9E+02 0.0063 21.9 6.1 80 203-291 4-87 (143)
232 1orr_A CDP-tyvelose-2-epimeras 22.1 1.7E+02 0.0058 26.1 6.7 91 192-288 17-124 (347)
233 3nvt_A 3-deoxy-D-arabino-heptu 22.1 1.4E+02 0.0047 28.8 6.2 92 188-290 157-258 (385)
234 1mb3_A Cell division response 22.0 1.7E+02 0.0058 21.3 5.7 78 204-290 3-84 (124)
235 4eu9_A Succinyl-COA:acetate co 22.0 2.4E+02 0.0082 28.0 8.2 112 155-277 18-159 (514)
236 4dq6_A Putative pyridoxal phos 21.9 2.4E+02 0.008 25.5 7.7 86 192-287 106-203 (391)
237 2nvv_A Acetyl-COA hydrolase/tr 21.8 2.7E+02 0.0091 27.8 8.4 100 156-266 10-138 (506)
238 1s8n_A Putative antiterminator 21.7 1.6E+02 0.0055 24.2 6.0 82 201-291 12-95 (205)
239 3obi_A Formyltetrahydrofolate 21.7 1.1E+02 0.0038 28.2 5.2 70 185-260 98-180 (288)
240 1smk_A Malate dehydrogenase, g 21.6 4.5E+02 0.015 24.0 9.6 101 169-282 8-117 (326)
241 4e7p_A Response regulator; DNA 21.3 2E+02 0.0069 22.0 6.2 83 200-291 18-104 (150)
242 2obb_A Hypothetical protein; s 21.3 1.1E+02 0.0037 25.1 4.6 47 188-237 28-74 (142)
243 4e5v_A Putative THUA-like prot 21.2 1.6E+02 0.0053 26.9 6.1 78 201-288 3-93 (281)
244 3ecd_A Serine hydroxymethyltra 21.2 4.2E+02 0.014 24.1 9.4 41 241-287 166-206 (425)
245 3kyj_B CHEY6 protein, putative 21.1 2E+02 0.0067 21.9 6.1 82 199-289 10-95 (145)
246 3sho_A Transcriptional regulat 20.9 3.4E+02 0.012 22.0 9.7 32 221-254 107-138 (187)
247 2ejb_A Probable aromatic acid 20.9 20 0.00069 31.1 -0.1 22 222-243 22-43 (189)
248 1zud_1 Adenylyltransferase THI 20.7 4.3E+02 0.015 23.2 11.3 111 153-288 18-150 (251)
249 3eh7_A 4-hydroxybutyrate COA-t 20.6 1.8E+02 0.0063 28.3 6.8 114 156-286 20-157 (434)
250 1ex2_A Protein MAF; structural 20.5 4E+02 0.014 22.8 8.4 37 251-287 65-104 (189)
251 3jx9_A Putative phosphoheptose 20.5 86 0.0029 26.6 3.9 36 168-208 77-112 (170)
252 2gn4_A FLAA1 protein, UDP-GLCN 20.3 1.8E+02 0.0061 26.7 6.5 111 169-292 21-144 (344)
253 3ew7_A LMO0794 protein; Q8Y8U8 20.3 2.6E+02 0.0089 22.9 7.1 85 191-288 15-101 (221)
254 2ayx_A Sensor kinase protein R 20.1 1.6E+02 0.0055 25.6 5.9 82 200-290 127-210 (254)
255 3ab8_A Putative uncharacterize 20.1 3.4E+02 0.012 23.2 8.1 58 221-287 205-267 (268)
256 2qsj_A DNA-binding response re 20.1 2.2E+02 0.0077 21.7 6.3 81 202-291 3-88 (154)
257 3ab8_A Putative uncharacterize 20.1 3.1E+02 0.011 23.5 7.8 44 245-291 107-151 (268)
258 3cz5_A Two-component response 20.1 1.9E+02 0.0066 22.2 5.8 81 202-291 5-89 (153)
259 3u5e_c L32, RP73, YL38, 60S ri 20.0 1E+02 0.0036 23.7 4.0 36 243-286 34-69 (105)
260 3npg_A Uncharacterized DUF364 20.0 2.7E+02 0.0092 24.9 7.4 93 168-298 115-207 (249)
261 1pjq_A CYSG, siroheme synthase 20.0 3.4E+02 0.012 26.2 8.7 94 169-290 12-106 (457)
No 1
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=3.8e-100 Score=749.82 Aligned_cols=337 Identities=42% Similarity=0.596 Sum_probs=321.7
Q ss_pred cCCCCCe-eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHH
Q 018280 7 STDNNSL-QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAAD 85 (358)
Q Consensus 7 ~~~~~~~-~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~e 85 (358)
|+..+++ ++|+|+++.|+|||||+||++++|++|++++|++++||+|+|||||+||++||+++++++++. .+.+.++
T Consensus 22 m~~~m~~~~~~~~~~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~--~~~~~~~ 99 (374)
T 2yvk_A 22 MTHSFAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDI--ETDNVTE 99 (374)
T ss_dssp CGGGGGSCCSEEECSSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTC--CCSCHHH
T ss_pred hcccCcccCceEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhc--cCCCHHH
Confidence 4444678 999999999999999999999999999999999999999999999999999999999999876 3457899
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 018280 86 AASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQL 165 (358)
Q Consensus 86 l~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~ 165 (358)
|.+.|++++++|.++|||++||+|++++|++.+.+. .+.+++++.+++.+++|.+|+.+++++|+++|+++|.
T Consensus 100 l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~----~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~--- 172 (374)
T 2yvk_A 100 FRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENA----ISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFK--- 172 (374)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 999999999999999999999999999999887532 4788999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhc
Q 018280 166 KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD 245 (358)
Q Consensus 166 ~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~ 245 (358)
+|++||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||+|||||+|.+.|||||+|+|||++++|++
T Consensus 173 --~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~ 250 (374)
T 2yvk_A 173 --KGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKE 250 (374)
T ss_dssp --TTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHH
T ss_pred --CCCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCcccc
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVA 325 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~ 325 (358)
++||+||||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|++++||+|+|+|+..+. |.+++
T Consensus 251 ~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~---g~~~~ 327 (374)
T 2yvk_A 251 KQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQIS---GVRTA 327 (374)
T ss_dssp TTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECS
T ss_pred cCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccC---Cceec
Confidence 889999999999999999999999999999999999999999999999999999999999999999999886 56778
Q ss_pred CCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 326 ASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 326 ~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
+++++++||+||+|||+|||+||||+|+++|+
T Consensus 328 ~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~P~ 359 (374)
T 2yvk_A 328 PSNVPVFNPAFDITPHDLISGIITEKGIMTGN 359 (374)
T ss_dssp CTTCCBCCBSEEEECGGGCSEEEETTEEECSC
T ss_pred CCCcceeCcceeccCHHHCCEEeccCCccCcc
Confidence 89999999999999999999999999999985
No 2
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=1.5e-98 Score=734.14 Aligned_cols=329 Identities=41% Similarity=0.603 Sum_probs=315.2
Q ss_pred CeeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Q 018280 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLG 91 (358)
Q Consensus 12 ~~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~ 91 (358)
++++|+|+++ |+|||||+||++++|++|+++++++++||+|+|||||+||++|+++|++++++. .+.+.++|.+.|+
T Consensus 2 ~~~~~~~~~~-l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai~iaaa~~l~l~~~~~--~~~~~~~l~~~l~ 78 (351)
T 1t5o_A 2 SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIALAARER--EFADVDELKEHLK 78 (351)
T ss_dssp CCCSEEESSS-EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSS--CCSCHHHHHHHHH
T ss_pred CccceEeeCC-EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHH
Confidence 4788999988 999999999999999999999999999999999999999999999999999875 3457899999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcE
Q 018280 92 NKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFS 171 (358)
Q Consensus 92 ~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ 171 (358)
+++++|.++|||++||+|++++|++.+.+ ..+.+++++.+++.+++|.+|+.+++++|+++|+++|. +|++
T Consensus 79 ~~~~~L~~aRPtav~l~~a~~~~~~~i~~----~~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~-----~g~~ 149 (351)
T 1t5o_A 79 KAADFLASTRPTAVNLFVGIERALNAALK----GESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLE-----DGDV 149 (351)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----TTCE
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCE
Confidence 99999999999999999999999988854 25788999999999999999999999999999999999 8999
Q ss_pred EEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEE
Q 018280 172 VLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAV 251 (358)
Q Consensus 172 ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~V 251 (358)
||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||+|||||+|.+.|||||+|+|||++++|++++||+|
T Consensus 150 ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~V 229 (351)
T 1t5o_A 150 VLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKV 229 (351)
T ss_dssp EEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEE
T ss_pred EEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCcee
Q 018280 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISV 331 (358)
Q Consensus 252 ivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v 331 (358)
|||||+|++|| ++||+|||++|++||+|||||||+||+||||+. +.|+++++|+|+|+|+..+. |.++.++++++
T Consensus 230 ivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~---g~~~~~~~v~v 304 (351)
T 1t5o_A 230 IVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCG---KRQIAPLNVKV 304 (351)
T ss_dssp EECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEET---TEECSCTTCEE
T ss_pred EECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccC---CeeecCCCcce
Confidence 99999999999 999999999999999999999999999999999 99999999999999999886 56778899999
Q ss_pred ecceeeecCCCCccEEEeCCCCccCC
Q 018280 332 WNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 332 ~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
+||+||+|||+|||+||||+|+++|+
T Consensus 305 ~NPaFDvTP~~lIt~iITE~Gv~~p~ 330 (351)
T 1t5o_A 305 YNPAFDPTPLENVTALITEYGVIYPP 330 (351)
T ss_dssp CCBSEEEEEGGGCSEEEETTEEECSC
T ss_pred eCccccCCCHHHCCEEEeCCCccCcc
Confidence 99999999999999999999999985
No 3
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=9.1e-98 Score=734.98 Aligned_cols=348 Identities=49% Similarity=0.750 Sum_probs=321.7
Q ss_pred ccCCCCC--eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhcc--CCCC
Q 018280 6 VSTDNNS--LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLN--AFSG 81 (358)
Q Consensus 6 ~~~~~~~--~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~--~~~~ 81 (358)
.|++++. +++|+|+++.|+|||||+||++++|+.|+++++++++||+|+|||||+||++||+++++++++.. .++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~~~~ 88 (383)
T 2a0u_A 9 MMSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELK 88 (383)
T ss_dssp -CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhcCCccccccceEEECCEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhhcccccCC
Confidence 4666654 78999999999999999999999999999999999999999999999999999999999998641 2345
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018280 82 TAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFL 161 (358)
Q Consensus 82 ~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i 161 (358)
+.++|.+.|++++++|.++|||++||+|++++|++.+.+.. ...+.+++++.+++.+++|.+|+.+++++|+++|+++|
T Consensus 89 ~~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~-~~~~~~~~k~~l~~~a~~i~~e~~~~~~~I~~~g~~~I 167 (383)
T 2a0u_A 89 SGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLD-PTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHI 167 (383)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSC-TTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999887532 12467889999999999999999999999999999999
Q ss_pred Hhhh---cCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH
Q 018280 162 QNQL---KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA 238 (358)
Q Consensus 162 ~~~~---~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa 238 (358)
.+.. +.+|++||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||+|+|||+|.+.|||||+|+|||
T Consensus 168 ~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa 247 (383)
T 2a0u_A 168 LAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGA 247 (383)
T ss_dssp HHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGG
T ss_pred hhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhH
Confidence 8321 1258999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceecc-
Q 018280 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSR- 317 (358)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~- 317 (358)
++++|++++||+||||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|++++||+|+|+||..++
T Consensus 248 ~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~ 327 (383)
T 2a0u_A 248 ASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLV 327 (383)
T ss_dssp HHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTT
T ss_pred HHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhccccc
Confidence 9999988889999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCCccccCCC--ceeecceeeecCCCCcc-EEEeCCCCccC
Q 018280 318 GGLGEQVAASG--ISVWNPAFDVTPANLIT-GIITEKVSVSL 356 (358)
Q Consensus 318 ~~~g~~~~~~~--~~v~np~fDvtP~~lIt-~iITE~Gi~~~ 356 (358)
+ |.++++++ ++++||+||+|||+||| +||||+|+++|
T Consensus 328 ~--g~~~a~~~~~v~v~NPaFDvTP~~lIt~~iITE~Gv~~p 367 (383)
T 2a0u_A 328 T--KQRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAP 367 (383)
T ss_dssp T--CCBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECC
T ss_pred C--CceecCCCCceeeecccccccChHHCCcEEEccCCccCC
Confidence 2 45667788 99999999999999999 99999999966
No 4
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=6.8e-98 Score=728.43 Aligned_cols=328 Identities=47% Similarity=0.696 Sum_probs=310.7
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 018280 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (358)
Q Consensus 13 ~~~i~~~~~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (358)
+++|+|+++.|+|||||+||++++|+.|+++++++++|++|+|||||+||++||+++++++++.. ..+.+ +.|++
T Consensus 7 ~~~~~~~~~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~ig~aaa~~l~l~~~~~~--~~~~~---~~l~~ 81 (347)
T 1t9k_A 7 TKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYK--TGSLT---DWMKQ 81 (347)
T ss_dssp CSSEEECSSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTCC--SSCHH---HHHHH
T ss_pred ccceEEECCEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhcc--cCCHH---HHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999752 23444 45999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 018280 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (358)
Q Consensus 93 ~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (358)
++++|.++|||++||+|++++|++.+.+. .+.+++++.+++.+++|.+|+.+++++|+++|+++|. +|++|
T Consensus 82 ~~~~L~~aRPtav~l~~a~~~~~~~i~~~----~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 152 (347)
T 1t9k_A 82 VKETLARTRPTAVNLFWALNRMEKVFFEN----ADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIK-----DGSTI 152 (347)
T ss_dssp HHHHHHTSCSSCTHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTEEE
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEE
Confidence 99999999999999999999999988643 2556799999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEE
Q 018280 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (358)
Q Consensus 173 LT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~Vi 252 (358)
|||||||+|||+|||||+++|+.|+++|++|+|||+||||++||+|+|||+|.+.|||||+|+|||++++|++++||+||
T Consensus 153 LThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~Vi 232 (347)
T 1t9k_A 153 LTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVV 232 (347)
T ss_dssp EECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHTTCCSEEE
T ss_pred EEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 018280 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (358)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~ 332 (358)
||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|++++||+|+|+|+..+. |.++.+++++++
T Consensus 233 vGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~---g~~~~~~~v~v~ 309 (347)
T 1t9k_A 233 VGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCG---GNRIAPEGVKVL 309 (347)
T ss_dssp ECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECSCTTCEEC
T ss_pred ECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccC---CeeccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999886 567788999999
Q ss_pred cceeeecCCCCccEEEeCCCCccCC
Q 018280 333 NPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 333 np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
||+||+|||+|||+||||+|+++|+
T Consensus 310 NPaFDvTP~~lIt~iITE~Gv~~p~ 334 (347)
T 1t9k_A 310 NPAFDVTENTLITAIITEKGVIRPP 334 (347)
T ss_dssp CBSEEEECGGGCSEEEETTEEECSS
T ss_pred CcccccCCHHHCCEEeccCCccCcc
Confidence 9999999999999999999999985
No 5
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=8e-85 Score=635.41 Aligned_cols=302 Identities=29% Similarity=0.387 Sum_probs=281.8
Q ss_pred eEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 018280 34 ETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAK 113 (358)
Q Consensus 34 ~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~ 113 (358)
-++|+.|+++++++++|++|+|||||+||++|+++|+++++++ .+.+.++|.+.|++++++|.++|||++||+|++++
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~--~~~~~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~ 91 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKS--KATNVDEFWKEMKQAAKILFETRPTAVSLPNALRY 91 (338)
T ss_dssp -----CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHC--CCCSHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3789999999999999999999999999999999999999986 34578999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHH
Q 018280 114 LKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVI 193 (358)
Q Consensus 114 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l 193 (358)
|++.+.+......+.+++++.+++.+++|++|+.+++++|+++|+++|. +|++||||||| +||+++|
T Consensus 92 ~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~~ILTh~~S--------~tvl~~l 158 (338)
T 3a11_A 92 VMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIE-----DGDVIMTHCHS--------KAAISVM 158 (338)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----TTCEEEECSCC--------HHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEeCCc--------HHHHHHH
Confidence 9999876333346788999999999999999999999999999999999 89999999998 7999999
Q ss_pred HHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHH
Q 018280 194 RALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL 273 (358)
Q Consensus 194 ~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~l 273 (358)
+.|+++|++|+|||+||||++|| |+|||+|.+.|||||+|+|||++++| ++||+||||||+|++||+++||+|||++
T Consensus 159 ~~A~~~gk~~~V~v~EtRP~~qG-rltA~eL~~~GI~vtlI~Dsa~~~~M--~~Vd~VivGAd~V~anG~v~NKiGT~~l 235 (338)
T 3a11_A 159 KTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYM--KMTDKVVMGADSITVNGAVINKIGTALI 235 (338)
T ss_dssp HHHHHTTCCCEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGTTTTG--GGCSEEEECCSEECTTSCEEEETTHHHH
T ss_pred HHHHHCCCeEEEEEeCCCCchhh-HHHHHHHHhCCCCEEEEehHHHHHHH--HhCCEEEECccEEecCCCEeecccHHHH
Confidence 99999999999999999999999 89999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCcccc-CCCceeecceeeecCCCCccEEEeCCC
Q 018280 274 ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVA-ASGISVWNPAFDVTPANLITGIITEKV 352 (358)
Q Consensus 274 A~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~-~~~~~v~np~fDvtP~~lIt~iITE~G 352 (358)
|++||+|||||||+||+||||+.++.|.+++||+|+|+|+... |.+.+ +++++++||+||+|||+|||+||||+|
T Consensus 236 Al~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~----g~~~~w~~~v~v~NPaFDvTP~~lIt~iITE~G 311 (338)
T 3a11_A 236 ALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE----DELKTWPKNIEVWNPAFDVTPPEYVDVIITERG 311 (338)
T ss_dssp HHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH----HHHTTSCTTEEECCBSEEEECGGGCSEEEETTE
T ss_pred HHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc----cccccCCCCceecCcceeccCHHHcCEEecCCC
Confidence 9999999999999999999999999999999999999999876 23455 789999999999999999999999999
Q ss_pred CccCC
Q 018280 353 SVSLT 357 (358)
Q Consensus 353 i~~~t 357 (358)
+++|+
T Consensus 312 v~~p~ 316 (338)
T 3a11_A 312 IIPPY 316 (338)
T ss_dssp EECGG
T ss_pred ccCch
Confidence 99985
No 6
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=3.6e-73 Score=540.33 Aligned_cols=269 Identities=25% Similarity=0.277 Sum_probs=254.4
Q ss_pred cChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 018280 41 RDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISK 120 (358)
Q Consensus 41 ~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~ 120 (358)
.++++++++|++|+|||||+||++|+++|+++++++ +.++|++.|++++++|.++|||++||+|++++|
T Consensus 4 ~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-----~~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~------ 72 (276)
T 1vb5_A 4 ERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-----DESLLEDAIMELREEVVKVNPSMASLYNLARFI------ 72 (276)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-----CTTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS------
T ss_pred ccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc------
Confidence 368999999999999999999999999999999875 456799999999999999999999999999988
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC
Q 018280 121 AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200 (358)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g 200 (358)
+.+++++.+++.+++|++++..++++|+++|+++|. +|++||||||| +|++++|+.|+++|
T Consensus 73 ------~~~~~k~~l~~~~~~~~~~~~~~~~~Ia~~a~~~I~-----~g~~IlT~~~s--------~Tv~~~l~~a~~~~ 133 (276)
T 1vb5_A 73 ------PVTNRRDILKSRALEFLRRMEEAKRELASIGAQLID-----DGDVIITHSFS--------STVLEIIRTAKERK 133 (276)
T ss_dssp ------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----TTEEEECCSCC--------HHHHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEEEEeCCC--------hHHHHHHHHHHHcC
Confidence 123567889999999999999999999999999999 89999999998 79999999999999
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhc
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (358)
++|+||++||||++|| +++||+|.+.||||++|+|++++++| ++||+||+|||+|++||+++||+|||++|++||+|
T Consensus 134 ~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa~~~~m--~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~ 210 (276)
T 1vb5_A 134 KRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQMGLFC--REASIAIVGADMITKDGYVVNKAGTYLLALACHEN 210 (276)
T ss_dssp CCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGHHHHH--TTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHT
T ss_pred CeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHHHHHHH--ccCCEEEEcccEEecCCCEeechhHHHHHHHHHHc
Confidence 9999999999999999 78899999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 281 NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 281 ~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
++||||+||++||++. ++|+++++|+|+|+| ++++++||+||+||++|||+||||.|+++|+
T Consensus 211 ~vp~~V~a~~~K~~~~-~~~~~i~iE~r~~~e--------------~~v~v~np~fD~tP~~lI~~iITe~Gv~~p~ 272 (276)
T 1vb5_A 211 AIPFYVAAETYKFHPT-LKSGDVMLMERDLIR--------------GNVRIRNVLFDVTPWKYVRGIITELGIVIPP 272 (276)
T ss_dssp TCCEEEECCGGGBCSS-CCGGGCCCCBCCCEE--------------TTEECCCBCEEEECGGGCSEEEETTEEECTT
T ss_pred CCCEEEeccccccCcc-cCccccccccCCccc--------------cCccccCCCeEecCHHHCCEEEeCCCccCcc
Confidence 9999999999999999 889999999999987 3578999999999999999999999999986
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=8.3e-69 Score=516.54 Aligned_cols=274 Identities=26% Similarity=0.291 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 018280 59 PAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA 138 (358)
Q Consensus 59 ~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~ 138 (358)
-.++++|+.+|...+..+ ++.+.+||.+.|+++.++|+++|| ++||.|+++++++.+........+.+++|+.+++.
T Consensus 20 ~s~aiAAi~aL~~~l~~s--~~~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~ 96 (315)
T 3ecs_A 20 MASAVAAIRTLLEFLKRD--KGETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIER 96 (315)
T ss_dssp SCHHHHHHHHHHHHHTCC--C----CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 356788999999999886 567899999999999999999998 78999999999987643322234678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH
Q 018280 139 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR 218 (358)
Q Consensus 139 ~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~r 218 (358)
++.|.++...++++|+++|+++|. +|++||||||| +||+++|+.|+++|++|+|||+||||++||.+
T Consensus 97 ~~~~~~~~~~a~~~I~~~~~~~I~-----~g~~ILTh~~S--------~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~ 163 (315)
T 3ecs_A 97 GELFLRRISLSRNKIADLCHTFIK-----DGATILTHAYS--------RVVLRVLEAAVAAKKRFSVYVTESQPDLSGKK 163 (315)
T ss_dssp HHHHHHHHTTHHHHHHHHHGGGCC-----TTEEEEECSCC--------HHHHHHHHHHHTTTCCEEEEEECCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEcCCc--------HHHHHHHHHHHHcCCeEEEEEecCCCcchHHH
Confidence 999999888999999999999999 89999999998 79999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCC
Q 018280 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (358)
Q Consensus 219 lta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~ 298 (358)
| ||+|.+.|||||+|+|||++++| ++||+|++|||+|++||+++||+|||++|++||+|||||||+||+|||++.++
T Consensus 164 l-a~~L~~~gI~vtli~Dsa~~~~m--~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~ 240 (315)
T 3ecs_A 164 M-AKALCHLNVPVTVVLDAAVGYIM--EKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240 (315)
T ss_dssp H-HHHHHTTTCCEEEECGGGHHHHG--GGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCC
T ss_pred H-HHHHHHcCCCEEEEehhHHHHHH--HhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCC
Confidence 8 99999999999999999999999 79999999999999999999999999999999999999999999999999887
Q ss_pred C-CCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccCC
Q 018280 299 S-GQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 299 ~-~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
. +.++++|+|++.|+...+ ..+++++++||+||+|||+|||+||||+|+++|+
T Consensus 241 ~~~~~i~~e~~~~~ev~~~~------~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~ 294 (315)
T 3ecs_A 241 LNQQDVPDKFKYKADTLKVA------QTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPS 294 (315)
T ss_dssp SSGGGSCGGGTC-------------------CCBCCCSEEEECGGGCSEEEETTEEECGG
T ss_pred CCcccCCccccChhhccccc------cCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcc
Confidence 4 466899999999987654 2467899999999999999999999999999985
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=5.9e-55 Score=393.38 Aligned_cols=158 Identities=49% Similarity=0.749 Sum_probs=147.9
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC--cCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR--VSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~--vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
||+|+|||+||||++||+|||||+|.+.|||||+|+|||++++|++++ ||+||+|||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 689999999999999999999999999999999999999999998777 999999999999999999999999999999
Q ss_pred HhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCC-----CC--------------ccccCCCceeecceeee
Q 018280 278 KFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGG-----LG--------------EQVAASGISVWNPAFDV 338 (358)
Q Consensus 278 k~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~-----~g--------------~~~~~~~~~v~np~fDv 338 (358)
|+|||||||+||++||++.++.|+++++|+|+|+|+...++. .| .+.++++++++||+||+
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~Np~fDv 161 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVWNPAFDI 161 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEECCBSEEE
T ss_pred HHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcccccccccc
Confidence 999999999999999999999999999999999999887531 01 14567899999999999
Q ss_pred cCCCCccEEEeCCCCccCC
Q 018280 339 TPANLITGIITEKVSVSLT 357 (358)
Q Consensus 339 tP~~lIt~iITE~Gi~~~t 357 (358)
|||+|||+||||+|+++|+
T Consensus 162 TP~~lIt~iITE~Gv~~ps 180 (191)
T 1w2w_B 162 TPHELIDGIITEEGVFTKN 180 (191)
T ss_dssp ECGGGCSEEEETTEEECCC
T ss_pred CCHHHcCEEEecCcccCCC
Confidence 9999999999999999883
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=4e-47 Score=345.47 Aligned_cols=188 Identities=40% Similarity=0.635 Sum_probs=164.9
Q ss_pred CeeeEEE---e-C-CeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhcc-CC------
Q 018280 12 SLQSICY---R-R-GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLN-AF------ 79 (358)
Q Consensus 12 ~~~~i~~---~-~-~~~~ildq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~-~~------ 79 (358)
+++.|+| + + +.|+|||||+||++++|++|++++|++++|++|+|||||+||++||+||++++++.. ..
T Consensus 2 ~l~~~~~~~~~~~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaIgiaAA~glal~a~~~~~~~~~~~~~ 81 (211)
T 1w2w_A 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNPTSDVAT 81 (211)
T ss_dssp TTCSEEEECSSTTSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHCTTSTGGG
T ss_pred CcCCeeeeeecCCCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHHHHHHHHHHHHHHHhccccCChhhcc
Confidence 4666676 3 3 489999999999999999999999999999999999999999999999999998641 10
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018280 80 ---SGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSY 156 (358)
Q Consensus 80 ---~~~~~el~~~l~~~~~~L~~aRPtav~l~nai~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~a~~~I~~~ 156 (358)
..+..+|.+.|++.+++|.++|||+|||+|++++|++.+... .+.+++++.++++++.|++|+..+|++|++|
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~----~~~~~~~~~l~~~a~~i~~ed~~~n~~IG~~ 157 (211)
T 1w2w_A 82 LYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS----SDLKAFDGSLYNYVCELIDEDLANNMKMGDN 157 (211)
T ss_dssp GSCTTCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112338999999999999999999999999999999887532 4778899999999999999999999999999
Q ss_pred HHHHhHhhhc-C---CCcEEEEecCCCcccccccccHHHHHHHHHHCCCee
Q 018280 157 GASFLQNQLK-N---SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLE 203 (358)
Q Consensus 157 ~~~~i~~~~~-~---~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~ 203 (358)
|+++|.+... + +|++||||||||+|||+||||++++|+.||++|+.+
T Consensus 158 Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 158 GAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAK 208 (211)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCcc
Confidence 9999944321 2 579999999999999999999999999999998765
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.29 E-value=2.4e-06 Score=78.36 Aligned_cols=129 Identities=19% Similarity=0.129 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCe-eEEEEecCCCCCcchHHHHH
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVL-ERAYCSETRPFNQGSRLTAF 222 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~----g~~-~~V~v~EsrP~~qG~rlta~ 222 (358)
+..++|++.++++|+ +|++|...+ | +|+..+++.+.+. +.+ ++| |+-| .+ ++.
T Consensus 7 ~~K~~IA~~Aa~~I~-----dg~~I~Lgs--G-------ST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~-~a~ 64 (227)
T 1uj6_A 7 SYKKEAAHAAIAYVQ-----DGMVVGLGT--G-------STARYAVLELARRLREGELKGVVG-VPTS------RA-TEE 64 (227)
T ss_dssp HHHHHHHHHHHTTCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHTTSSCSCEE-EESS------HH-HHH
T ss_pred HHHHHHHHHHHHHCC-----CCCEEEEcC--C-------HHHHHHHHHHhhhhhhcCCCCEEE-ECCc------HH-HHH
Confidence 356678999999999 899998764 3 5777777766443 224 776 4443 22 466
Q ss_pred HHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHH--HHHHHhcCCeEEEeccCccccCCCCCC
Q 018280 223 ELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL--ALCAKFHNILFYVAAPLTSIDLTLSSG 300 (358)
Q Consensus 223 eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~l--A~~Ak~~~iPvyV~a~~~k~~~~~~~~ 300 (358)
+|.+.||++..+ ++.++|+.|+|||.|-.++-.....|...+ +++++. ...||++++++||..... +
T Consensus 65 ~l~~~gi~v~~l---------~~~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~lg-~ 133 (227)
T 1uj6_A 65 LAKREGIPLVDL---------PPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPVLG-R 133 (227)
T ss_dssp HHHHTTCCBCCC---------CTTCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSSSC-S
T ss_pred HHHhCCCeEEEc---------CCCcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccccC-C
Confidence 788899998877 336899999999999999855566666666 455553 459999999999997633 3
Q ss_pred CccccccCC
Q 018280 301 QEIVIEERS 309 (358)
Q Consensus 301 ~~i~ie~r~ 309 (358)
..+|+|-.+
T Consensus 134 ~~lPvEV~p 142 (227)
T 1uj6_A 134 GPVPVEIVP 142 (227)
T ss_dssp SCEEEEECS
T ss_pred CceeEEECc
Confidence 357776543
No 11
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.70 E-value=0.00011 Score=66.90 Aligned_cols=131 Identities=13% Similarity=0.019 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
+..++|++.++++++ +|++|.-- || +|+..+++.+.+.+.+++|.|+=|- + ++.+|.+.
T Consensus 5 ~~K~~IA~~Aa~~I~-----dg~~I~Ld--sG-------ST~~~la~~L~~~~~~itv~VTnS~------~-~a~~l~~~ 63 (219)
T 1m0s_A 5 EMKKLAAQAALQYVK-----ADRIVGVG--SG-------STVNCFIEALGTIKDKIQGAVAASK------E-SEELLRKQ 63 (219)
T ss_dssp HHHHHHHHHHGGGCC-----TTSEEEEC--CS-------HHHHHHHHHHHTTGGGSCEEEESSH------H-HHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEc--Ch-------HHHHHHHHHHhccCCCEEEEECChH------H-HHHHHHhC
Confidence 355678999999999 89999753 33 5777788777543215666454432 2 36678888
Q ss_pred CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCccccc
Q 018280 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (358)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie 306 (358)
||++..+- .+ .++|+.|+|||.|-.++++..--|-..+- -+......-+|++++++||......+..+|+|
T Consensus 64 gi~vi~l~------~~--~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvE 135 (219)
T 1m0s_A 64 GIEVFNAN------DV--SSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVE 135 (219)
T ss_dssp TCCBCCGG------GC--SCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTSSSCEEEE
T ss_pred CCeEEEeC------cc--ccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCCCCCEEEE
Confidence 99877641 12 58999999999998876665544444333 12223445899999999998765433456665
Q ss_pred c
Q 018280 307 E 307 (358)
Q Consensus 307 ~ 307 (358)
-
T Consensus 136 V 136 (219)
T 1m0s_A 136 V 136 (219)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.69 E-value=0.00019 Score=65.48 Aligned_cols=130 Identities=15% Similarity=0.045 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
+..++|++.++++++ +|++|.-- || ||+..+++...+..+++++.|+=|- + ++.+|.+.
T Consensus 11 ~~K~~iA~~A~~~V~-----~g~~Iglg--sG-------ST~~~~i~~L~~~~~~itv~VtnS~------~-~a~~l~~~ 69 (224)
T 3kwm_A 11 ELKKLAATEAAKSIT-----TEITLGVG--TG-------STVGFLIEELVNYRDKIKTVVSSSE------D-STRKLKAL 69 (224)
T ss_dssp HHHHHHHHHHHTTCC-----SSEEEEEC--CS-------HHHHHHHHHGGGCTTTEEEEEESCH------H-HHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEC--Cc-------HHHHHHHHHHHhhcCceEEEECCcH------H-HHHHHHHc
Confidence 345678888999999 89888663 33 5777788877665557777565442 2 46678899
Q ss_pred CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHH-HHHHHhcCCeEEEeccCccccCCCCCCCccccc
Q 018280 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (358)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~l-A~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie 306 (358)
|||+..+-+ . .++|+.|.|||.|-.++..+---|...+ --+......-||++++.+||..... ...+|+|
T Consensus 70 gi~l~~l~~------~--~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~plPvE 140 (224)
T 3kwm_A 70 GFDVVDLNY------A--GEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIE 140 (224)
T ss_dssp TCCBCCHHH------H--CSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC-SSCEEEE
T ss_pred CCeEEecCc------c--ccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC-CCCeEEE
Confidence 998765422 2 6999999999999998877664444333 1233345667999999999987643 2346665
Q ss_pred c
Q 018280 307 E 307 (358)
Q Consensus 307 ~ 307 (358)
-
T Consensus 141 V 141 (224)
T 3kwm_A 141 V 141 (224)
T ss_dssp E
T ss_pred E
Confidence 3
No 13
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.68 E-value=0.00034 Score=64.67 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHH-HhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CC-eeEEEEecCCCCCcchHHH
Q 018280 147 VATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GV-LERAYCSETRPFNQGSRLT 220 (358)
Q Consensus 147 ~~a~~~I~~~~~~-~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~----g~-~~~V~v~EsrP~~qG~rlt 220 (358)
....++|++.+++ +|. +|++|.-= || ||+..+++.+.+. +. +++| |+=| . -+
T Consensus 10 ~~~K~~iA~~Aa~~~I~-----dg~~IgLg--sG-------ST~~~~~~~L~~~~~~~~l~~itv-VTnS------~-~~ 67 (244)
T 2f8m_A 10 DSLKKIVAYKAVDEYVQ-----SNMTIGLG--TG-------STVFYVLERIDNLLKSGKLKDVVC-IPTS------I-DT 67 (244)
T ss_dssp HHHHHHHHHHHHHHHCC-----TTCEEEEC--CS-------TTTHHHHHHHHHHHHHTSSCSCEE-EESS------H-HH
T ss_pred HHHHHHHHHHHHHHhCC-----CCCEEEEc--Ch-------HHHHHHHHHHhhhhhccCCCCEEE-ECCc------H-HH
Confidence 3456689999999 999 89998753 34 4777777666432 22 5665 3332 1 24
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHH-HHHhcCCeEEEeccCcccc-CCCC
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSID-LTLS 298 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~iPvyV~a~~~k~~-~~~~ 298 (358)
+.+|.+.||++..+ + .+ .++|+.|.|||.|-.+++++---|-..+-- +.-....-|||+++.+||. ....
T Consensus 68 a~~l~~~gi~v~~l-~-----~~--~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg 139 (244)
T 2f8m_A 68 ELKARKLGIPLTTL-E-----KH--SNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLG 139 (244)
T ss_dssp HHHHHHHTCCBCCC-C-----SS--CCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTT
T ss_pred HHHHHHCCCeEEEe-c-----cc--CcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCC
Confidence 66777779998876 2 34 589999999999998877766666655544 2446777899999999999 6543
Q ss_pred CCCcccccc
Q 018280 299 SGQEIVIEE 307 (358)
Q Consensus 299 ~~~~i~ie~ 307 (358)
....+|+|-
T Consensus 140 ~~~plPvEV 148 (244)
T 2f8m_A 140 MTGAVPIEI 148 (244)
T ss_dssp CSSCEEEEE
T ss_pred CCCcEEEEE
Confidence 233566654
No 14
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.67 E-value=0.00021 Score=65.48 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---C-C-eeEEEEecCCCCCcchHHHHH
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---G-V-LERAYCSETRPFNQGSRLTAF 222 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~---g-~-~~~V~v~EsrP~~qG~rlta~ 222 (358)
+..++|++.++++|+ +|++|.-= || +|+..+++.+.+. + . +++| |+=| .+ ++.
T Consensus 5 ~~K~~IA~~Aa~~I~-----dg~~I~Ld--sG-------ST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~-~a~ 62 (229)
T 1lk5_A 5 EMKKIAAKEALKFIE-----DDMVIGLG--TG-------STTAYFIKLLGEKLKRGEISDIVG-VPTS------YQ-AKL 62 (229)
T ss_dssp HHHHHHHHHHGGGCC-----TTCEEEEC--CS-------HHHHHHHHHHHHHHHTTSSCSCEE-EESS------HH-HHH
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEc--Ch-------HHHHHHHHHHhhhhhhccCCCEEE-ECCc------HH-HHH
Confidence 355678899999999 89999753 33 5777777776433 2 1 5666 3332 12 466
Q ss_pred HHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCC
Q 018280 223 ELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQ 301 (358)
Q Consensus 223 eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~iPvyV~a~~~k~~~~~~~~~ 301 (358)
+|.+.||++..+- .+ .++|+.|+|||.|-.++++..-.|-..+- -+......-||++++++||......+.
T Consensus 63 ~l~~~gi~vi~l~------~~--~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~ 134 (229)
T 1lk5_A 63 LAIEHDIPIASLD------QV--DAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKM 134 (229)
T ss_dssp HHHHTTCCBCCGG------GC--SCEEEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTSSC
T ss_pred HHHhCCCeEEEeC------Cc--ccCCEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCCCC
Confidence 7888899877641 12 48999999999998876665544444443 223335558999999999997654334
Q ss_pred cccccc
Q 018280 302 EIVIEE 307 (358)
Q Consensus 302 ~i~ie~ 307 (358)
.+|+|-
T Consensus 135 ~lPvEV 140 (229)
T 1lk5_A 135 PVPIEV 140 (229)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 566664
No 15
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.45 E-value=9.6e-05 Score=67.32 Aligned_cols=129 Identities=18% Similarity=0.049 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCC
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~G 228 (358)
..++|++.++++|+ +|++|.-- || +|+..+++.+.+.+.+++|.|+=|-+. +.+|.+.|
T Consensus 6 ~K~~IA~~Aa~lI~-----dg~~I~Ld--sG-------ST~~~la~~L~~~~~~itv~VTnS~~~-------a~~l~~~g 64 (219)
T 1o8b_A 6 LKKAVGWAALQYVQ-----PGTIVGVG--TG-------STAAHFIDALGTMKGQIEGAVSSSDAS-------TEKLKSLG 64 (219)
T ss_dssp ----------------------CEEEC--CS-------CC---------------CCEEESCCC----------------
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEc--Ch-------HHHHHHHHHHhccCCCEEEEECCcHHH-------HHHHHhCC
Confidence 45678899999999 89998753 33 477777776644321456545555432 44566678
Q ss_pred CCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCcccccc
Q 018280 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (358)
Q Consensus 229 I~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~ 307 (358)
|++..+ + .+ .++|+.|+|||.|-.++.+..--|-..+- -+......-+|++++++||..... +..+|+|-
T Consensus 65 i~vi~l--~----~~--~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg-~~~lPvEV 135 (219)
T 1o8b_A 65 IHVFDL--N----EV--DSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG-KFPLPVEV 135 (219)
T ss_dssp ---CCG--G----GC--SCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred CeEEEe--C----cc--CcCCEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC-CCcEEEEE
Confidence 876654 1 12 58999999999999887666433333333 122234448999999999987643 23466654
No 16
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.37 E-value=0.00089 Score=61.13 Aligned_cols=128 Identities=20% Similarity=0.148 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHHHHHHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFEL 224 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~----g~~~~V~v~EsrP~~qG~rlta~eL 224 (358)
..+.+++.++++++ +|++|.-- || ||+..+++...+. +.++++ |+=|. + ++..|
T Consensus 4 ~K~~iA~~A~~~V~-----dg~vIgLG--sG-------ST~~~~i~~L~~~~~~~~~~i~~-VttS~------~-t~~~l 61 (225)
T 3l7o_A 4 LKKIAGVRAAQYVE-----DGMIVGLG--TG-------STAYYFVEEVGRRVQEEGLQVIG-VTTSS------R-TTAQA 61 (225)
T ss_dssp HHHHHHHHHHTTCC-----TTCEEEEC--CS-------TTHHHHHHHHHHHHHHHCCCCEE-EESSH------H-HHHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEC--Cc-------HHHHHHHHHHHHhhhhcCCCEEE-EcCCH------H-HHHHH
Confidence 34578888999999 89988653 33 4777777665443 456666 43331 2 45677
Q ss_pred HhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCcc
Q 018280 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (358)
Q Consensus 225 ~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i 303 (358)
.+.|||+..+-+ ..++|+.|.|||.|-.++.++---|...+= -+-.....-||+++..+||....- ...+
T Consensus 62 ~~~Gi~l~~l~~--------~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~pl 132 (225)
T 3l7o_A 62 QALGIPLKSIDE--------VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG-AFRL 132 (225)
T ss_dssp HHHTCCBCCGGG--------SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC-SSCE
T ss_pred hccCceEEecCc--------ccccCEEEEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcC-CCCE
Confidence 888999865432 279999999999999988776644443331 122234567899999999987643 2346
Q ss_pred cccc
Q 018280 304 VIEE 307 (358)
Q Consensus 304 ~ie~ 307 (358)
|+|-
T Consensus 133 PvEV 136 (225)
T 3l7o_A 133 PVEV 136 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 17
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.26 E-value=0.0013 Score=61.11 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHHHHHHHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELV 225 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~---~g~~~~V~v~EsrP~~qG~rlta~eL~ 225 (358)
..+.+++.++++|+ +|++|.-- || ||+..+++...+ .|.++++ |+=| .+ ++.+|.
T Consensus 27 ~K~~iA~~A~~~V~-----dg~vIgLG--sG-------ST~~~~i~~L~~~~~~gl~Itv-VttS------~~-ta~~l~ 84 (255)
T 3hhe_A 27 LKKMAALKALEFVE-----DDMRLGIG--SG-------STVNEFIPLLGERVANGLRVTC-VATS------QY-SEQLCH 84 (255)
T ss_dssp HHHHHHHHHHTTCC-----TTEEEEEC--CS-------HHHHHHHHHHHHHHHTTCCEEE-EESS------HH-HHHHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEC--Cc-------HHHHHHHHHHHHhhccCCcEEE-EcCC------HH-HHHHHH
Confidence 34568888899998 89887653 33 477777766543 3435554 3322 22 466788
Q ss_pred hCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCccc
Q 018280 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIV 304 (358)
Q Consensus 226 ~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ 304 (358)
+.|||+..+-+ + .++|+.|.|||.|-.+..++---|...+= -+......-|||++..+||....- ...+|
T Consensus 85 ~~GI~l~~l~~------~--~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG-~~plP 155 (255)
T 3hhe_A 85 KFGVPISTLEK------I--PELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG-AFALP 155 (255)
T ss_dssp HTTCCBCCTTT------C--CSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC-SSCEE
T ss_pred HcCCcEEeccc------c--cccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC-CCCeE
Confidence 99999775422 2 68999999999998887665533332221 233345667999999999987643 23466
Q ss_pred ccc
Q 018280 305 IEE 307 (358)
Q Consensus 305 ie~ 307 (358)
+|-
T Consensus 156 VEV 158 (255)
T 3hhe_A 156 IEV 158 (255)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 18
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=97.04 E-value=0.0054 Score=55.97 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHHHHHHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFEL 224 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~----g~~~~V~v~EsrP~~qG~rlta~eL 224 (358)
..++|++.++++|+ +|++|.-- || ||+..+++...+. +.+++++ +=| .+ ++..|
T Consensus 6 ~K~~iA~~A~~~I~-----~g~~Iglg--sG-------ST~~~~~~~L~~~~~~~~l~itvV-tnS------~~-~a~~l 63 (226)
T 2pjm_A 6 LKLKVAKEAVKLVK-----DGMVIGLG--TG-------STAALFIRELGNRIREEELTVFGI-PTS------FE-AKMLA 63 (226)
T ss_dssp HHHHHHHHHGGGCC-----TTCEEEEC--CS-------HHHHHHHHHHHHHHHHHTCCCEEE-ESS------HH-HHHHH
T ss_pred HHHHHHHHHHHHCC-----CCCEEEEC--CC-------HHHHHHHHHHHhhhhccCCcEEEE-eCc------HH-HHHHH
Confidence 45678899999999 89988663 33 4777777665432 3355543 322 12 46678
Q ss_pred HhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecC-CceecccccHHH-HHHHHhcCCeEEEeccCccccCCCCCCCc
Q 018280 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAAN-GDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQE 302 (358)
Q Consensus 225 ~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~n-G~v~nkiGT~~l-A~~Ak~~~iPvyV~a~~~k~~~~~~~~~~ 302 (358)
.+.||++.-+ .+-.+|+.|.|||.|-.+ +.++---|...+ --+-.....-|++++..+||.........
T Consensus 64 ~~~gi~v~~l---------~~~~iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~ 134 (226)
T 2pjm_A 64 MQYEIPLVTL---------DEYDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFP 134 (226)
T ss_dssp HHTTCCBCCT---------TTCCCSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSC
T ss_pred HhcCCeEEee---------ccccCCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCCCC
Confidence 8999987722 122399999999999999 666443343222 12223445679999999999976533244
Q ss_pred ccccc
Q 018280 303 IVIEE 307 (358)
Q Consensus 303 i~ie~ 307 (358)
+|+|-
T Consensus 135 lPvEV 139 (226)
T 2pjm_A 135 IPVEV 139 (226)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
No 19
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0048 Score=57.59 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=84.9
Q ss_pred HHHHHHHHHHH-HhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CC------eeEEEEecCCCCCcchH
Q 018280 149 TNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GV------LERAYCSETRPFNQGSR 218 (358)
Q Consensus 149 a~~~I~~~~~~-~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~---g~------~~~V~v~EsrP~~qG~r 218 (358)
..++|++.+++ +|... +|++|.-= || +|+..+++.+.+. +. +++| |+=| .+
T Consensus 21 ~K~~IA~~Aa~~~I~~~---dg~~IgLg--sG-------ST~~~~a~~L~~~~~~~~l~~~~~~itv-VTnS------~~ 81 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFD---DHKIIGIG--SG-------STVVYVAERIGQYLHDPKFYEVASKFIC-IPTG------FQ 81 (264)
T ss_dssp HHHHHHHHHHHHHCCTT---TCCEEEEC--CC-------SSTHHHHHHHHHHHTSTTTHHHHTTCEE-EESS------HH
T ss_pred HHHHHHHHHHHhccCCC---CCCEEEEc--Ch-------HHHHHHHHHHhHhhhccccccccCCEEE-ECCc------HH
Confidence 45678888888 77611 47888643 33 4777777766432 22 3555 3332 22
Q ss_pred HHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHH-HHHhcCCeEEEeccCcccc-CC
Q 018280 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSID-LT 296 (358)
Q Consensus 219 lta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~iPvyV~a~~~k~~-~~ 296 (358)
++.+|.+.||++..+ + .+ .++|+.|.|||.|-.++.++---|-..+-- +......-|||+++++||. ..
T Consensus 82 -~a~~l~~~gi~v~~l-~-----~~--~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~ 152 (264)
T 1xtz_A 82 -SRNLILDNKLQLGSI-E-----QY--PRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKH 152 (264)
T ss_dssp -HHHHHHHTTCEECCT-T-----TC--CSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSS
T ss_pred -HHHHHHHCCCeEEEe-h-----hc--CcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccc
Confidence 466788889987665 2 23 589999999999998876665555554433 2444667899999999999 54
Q ss_pred CCCCC--cccccc
Q 018280 297 LSSGQ--EIVIEE 307 (358)
Q Consensus 297 ~~~~~--~i~ie~ 307 (358)
.-... .+|+|-
T Consensus 153 Lg~~~~~plPVEV 165 (264)
T 1xtz_A 153 LGKNWRQGVPIEI 165 (264)
T ss_dssp BTSSCCSCEEEEE
T ss_pred ccccCCCCEeEEE
Confidence 32222 466653
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.87 E-value=0.0062 Score=56.00 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCC
Q 018280 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 229 (358)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI 229 (358)
.+.+++.+++++++.+. +|++|--- || ||+..+++.+.+..++++..|+=| .-++..|.+.||
T Consensus 15 K~~aA~~A~~~V~d~~~-~g~vIGLG--tG-------ST~~~~i~~L~~~~~~i~~~V~tS-------~~t~~~~~~~Gi 77 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVP-QGAVIGVG--TG-------STANCFIDALAAVKDRYRGAVSSS-------VATTERLKSHGI 77 (239)
T ss_dssp HHHHHHHHHHHHHHHSC-TTCEEEEC--CS-------HHHHHHHHHHHTTGGGSCEEEESS-------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhccCc-CCCEEEEC--cc-------HHHHHHHHHHHhhhccceEEeCCc-------HHHHHHHHHcCC
Confidence 44677778888882111 28887553 34 477778877765434555334332 235677889999
Q ss_pred CeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHH-HHHHHhcCCeEEEeccCccccCCCCCCCcccccc
Q 018280 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (358)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~l-A~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~ 307 (358)
|+..+- +..++|+.|.|||-|-.++..+--=|...+ =-+......-|||+++.+|+....- ...+|+|-
T Consensus 78 ~l~~l~--------~~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg-~~plPVEV 147 (239)
T 3uw1_A 78 RVFDLN--------EIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLG-QFPLPVEV 147 (239)
T ss_dssp CBCCGG--------GCSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred cEEecc--------cccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcC-CCCeEEEE
Confidence 986432 126899999999999888766653333222 1122233457899999999987543 23366653
No 21
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=86.58 E-value=2.3 Score=35.44 Aligned_cols=81 Identities=27% Similarity=0.293 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc----------hHHHHhhhcCCcCEEEEcceeee
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----------SAAAALMKDGRVSAVIVGADRVA 259 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----------sa~~~~m~~~~vd~VivGAd~i~ 259 (358)
+.+.+..++ ..|++|.++ | |++.|.+.||+|+.+.. ..+.-+++++++|+||--.+.
T Consensus 40 ~~~a~~l~~--lGf~i~AT~------G---Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~-- 106 (143)
T 2yvq_A 40 LGVAEQLHN--EGFKLFATE------A---TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN-- 106 (143)
T ss_dssp HHHHHHHHT--TTCEEEEEH------H---HHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC--
T ss_pred HHHHHHHHH--CCCEEEECc------h---HHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC--
Confidence 334454444 468888876 3 57779999999999963 347777899999999875432
Q ss_pred cCCceecccccHHHHHHHHhcCCeEEE
Q 018280 260 ANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 260 ~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
.--..--.|.+=.+|=.|+||++-
T Consensus 107 ---~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 107 ---NTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp ---CGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ---CCcCCccHHHHHHHHHHhCCCeEc
Confidence 111133567788889999999874
No 22
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=86.38 E-value=2.1 Score=38.72 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH----CCCeeEEEEecCCCCCcchHHHHHHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS----EGVLERAYCSETRPFNQGSRLTAFEL 224 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~----~g~~~~V~v~EsrP~~qG~rlta~eL 224 (358)
..+..++.++++++ +|++|=- + || ||+.-+++.+.+ .+.. +.++=| . .-|+..+
T Consensus 7 ~K~~aa~~A~~~V~-----~gmvvGl-G-TG-------STv~~~i~~L~~~~~~~~l~--i~~V~t---S---~~t~~~a 64 (228)
T 4gmk_A 7 LKQLVGTKAVEWIK-----DGMIVGL-G-TG-------STVKYMVDALGKRVNEEGLD--IVGVTT---S---IRTAEQA 64 (228)
T ss_dssp HHHHHHHHHGGGCC-----TTCEEEE-C-CS-------HHHHHHHHHHHHHHHHHCCC--CEEEES---S---HHHHHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEE-C-ch-------HHHHHHHHHHHHHHhhcCCc--EEEEeC---c---HHHHHHH
Confidence 34456677888898 7876533 2 33 477666665533 2333 332222 1 1246678
Q ss_pred HhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccH-----HHHHHHHhcCCeEEEeccCccccCCCCC
Q 018280 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTY-----SLALCAKFHNILFYVAAPLTSIDLTLSS 299 (358)
Q Consensus 225 ~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~-----~lA~~Ak~~~iPvyV~a~~~k~~~~~~~ 299 (358)
.+.|||+.-+.+ . .++|..|=|||-|-.|...+=-=|-. .+|.+| .-|+|++..+|+....-
T Consensus 65 ~~~Gi~l~~l~~------~--~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a----~~fI~IaD~sK~v~~LG- 131 (228)
T 4gmk_A 65 KSLGIVIKDIDE------V--DHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKS----NKNMWIVDESKMVDDLG- 131 (228)
T ss_dssp HHTTCCBCCGGG------S--SCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHE----EEEEEEEEGGGBCSSSC-
T ss_pred HHcCCceeChHH------C--CccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhh----hheEEEeccccccCccC-
Confidence 889999875443 2 78999999999999888776444432 234444 44899999999987542
Q ss_pred CCccccc
Q 018280 300 GQEIVIE 306 (358)
Q Consensus 300 ~~~i~ie 306 (358)
...+|+|
T Consensus 132 ~fplPVE 138 (228)
T 4gmk_A 132 QFPLPVE 138 (228)
T ss_dssp SSCEEEE
T ss_pred CeeEEEE
Confidence 1236665
No 23
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=84.61 E-value=2.1 Score=36.32 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=53.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEc------chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
.|+++.+++ |++.|.+ .||+|+.+. |..++..+++++||+||-=-|-. |.-...--.+.+=
T Consensus 39 Gf~l~AT~g---------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~Ir 106 (152)
T 1b93_A 39 QHVLYATGT---------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPL---NAVPHDPDVKALL 106 (152)
T ss_dssp TSEEEEETT---------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTT---SCCTTHHHHHHHH
T ss_pred CCEEEEccH---------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcc---cCCcccccHHHHH
Confidence 578888875 6777888 899999883 33578889999999998644300 3222133457788
Q ss_pred HHHHhcCCeEEEe
Q 018280 275 LCAKFHNILFYVA 287 (358)
Q Consensus 275 ~~Ak~~~iPvyV~ 287 (358)
-+|-.||||++--
T Consensus 107 R~A~~~~IP~~T~ 119 (152)
T 1b93_A 107 RLATVWNIPVATN 119 (152)
T ss_dssp HHHHHTTCCEESS
T ss_pred HHHHHcCCCEEeC
Confidence 8999999999854
No 24
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=84.56 E-value=2.5 Score=38.99 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC-CCeeEEEEecC-----CCCC---cchHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE-GVLERAYCSET-----RPFN---QGSRL 219 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~-g~~~~V~v~Es-----rP~~---qG~rl 219 (358)
..+.|+.++++.|. ||++|-+ |.|.-..+...+.+. ++.+.+. .|+ .|.. .+..
T Consensus 7 ~~e~Ia~~aA~~i~-----dG~~v~l----------GiGiP~~va~~~~~~~~~~l~l~-~E~G~lg~~p~~~~~~~~d- 69 (260)
T 1poi_B 7 NKEMQAVTIAKQIK-----NGQVVTV----------GTGLPLIGASVAKRVYAPDCHII-VESGLMDCSPVEVPRSVGD- 69 (260)
T ss_dssp HHHHHHHHHHTTCC-----TTCEEEC----------CSSHHHHHHHHHHHTTCTTCEEE-ETTTEEEECCSSCCSSTTC-
T ss_pred HHHHHHHHHHHhCC-----CCCEEEe----------CCCHHHHHHHHHHHhcCCCEEEE-EeCceecCcccCcccCccC-
Confidence 45689999999999 8988855 234323333444432 3344333 354 3321 1111
Q ss_pred HHHHHHhCCCCeEEEcchH-HHHh-----hhcCCcCEEEEcceeeecCCcee
Q 018280 220 TAFELVHDRIPATLIADSA-AAAL-----MKDGRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Dsa-~~~~-----m~~~~vd~VivGAd~i~~nG~v~ 265 (358)
..+.. ...-+.++. ..-+ ++.+++|..|+||=-|-.+|.+.
T Consensus 70 --~~~~~---~a~~~~~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 70 --LRFMA---HCGCIWPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp --HHHHT---SEEEECCHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred --CCcEe---ehhhhcCHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 11211 233445553 3444 67899999999999999999997
No 25
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=83.15 E-value=1.4 Score=39.24 Aligned_cols=98 Identities=24% Similarity=0.295 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCc-----chHHHHHHH
Q 018280 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQ-----GSRLTAFEL 224 (358)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~q-----G~rlta~eL 224 (358)
++.|+..++..|+ ||++|-. |.|.-..+-..+. ++. -.+..|+-...- +.... ..|
T Consensus 2 r~~Ia~raA~el~-----dG~~vnl----------GIGiP~~va~~~~--~~~-v~l~~E~G~~g~~p~p~~~~~d-~~~ 62 (207)
T 3rrl_B 2 REAIIKRAAKELK-----EGMYVNL----------GIGLPTLVANEVS--GMN-IVFQSENGLLGIGAYPLEGSVD-ADL 62 (207)
T ss_dssp HHHHHHHHHTTCC-----TTCEEEE----------CTTGGGGGGGGGS--SSC-CEEEETTTEEEECCCCCTTCCC-TTC
T ss_pred hHHHHHHHHHhCC-----CCCEEEE----------CCChHHHHHHhcc--CCc-EEEEeccceecCcCCCCccccC-HhH
Confidence 4678899999999 8887755 2232111112222 443 345556543321 11111 124
Q ss_pred HhCCCC-e-----EEEcchH-HHHhhhcCCcCEEEEcceeeecCCceec
Q 018280 225 VHDRIP-A-----TLIADSA-AAALMKDGRVSAVIVGADRVAANGDTAN 266 (358)
Q Consensus 225 ~~~GI~-v-----tlI~Dsa-~~~~m~~~~vd~VivGAd~i~~nG~v~n 266 (358)
...|-. + .-+.|++ ...+++.+++|..++||=-|-.+|.+.|
T Consensus 63 in~G~~~~t~~~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~ 111 (207)
T 3rrl_B 63 INAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLAN 111 (207)
T ss_dssp BCTTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEEC
T ss_pred eecCCceeeecCCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccc
Confidence 444422 2 2233444 5556788999999999999999999875
No 26
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=81.37 E-value=4.6 Score=36.46 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC--CeeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG--VLERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g--~~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
.++.++.++++++ +|++|=- + || ||+.-+++.+.++. ....+...-|. .-|+..+.+.
T Consensus 7 K~~aa~~A~~~V~-----~gmvvGl-G-TG-------STv~~~I~~L~~~~~~~~l~i~~v~tS------~~t~~~a~~~ 66 (226)
T 3ixq_A 7 KLKVAKEAVKLVK-----DGMVIGL-G-TG-------STAALFIRELGNRIREEELTVFGIPTS------FEAKMLAMQY 66 (226)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEE-C-CS-------HHHHHHHHHHHHHHHHHTCCCEEEESS------HHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-----CCCEEEe-C-cH-------HHHHHHHHHHHHhhhhcCCeeEeeccc------HHHHHHHHhc
Confidence 3456677888998 7876633 2 33 47776776654321 12234444332 1234556789
Q ss_pred CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCC-ceecccccHHH-HHHHHhcCCeEEEeccCccccCCCCCCCcccc
Q 018280 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANG-DTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVI 305 (358)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG-~v~nkiGT~~l-A~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~i 305 (358)
|||+.-..+ ..+|..|=|||-|-..+ ..+--=|-..+ ==+-.....-|+|+++.+|+....-....+|+
T Consensus 67 gi~l~~l~~---------~~iDl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~~fplPV 137 (226)
T 3ixq_A 67 EIPLVTLDE---------YDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPV 137 (226)
T ss_dssp TCCBCCTTT---------CCCSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEE
T ss_pred CCCcccccc---------ccccEEEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEeccccchhhcCCCCCccE
Confidence 999765422 24899999999995322 23322222221 11222345678999999999765322233666
Q ss_pred cc
Q 018280 306 EE 307 (358)
Q Consensus 306 e~ 307 (358)
|-
T Consensus 138 EV 139 (226)
T 3ixq_A 138 EV 139 (226)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 27
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=75.18 E-value=5.2 Score=34.83 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=54.3
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEc------chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
.|++|.+++ |++.|.+ .||+|+.+. |..++..+++++||+||-=-|-. |.-...--.+.+=
T Consensus 55 Gf~L~AT~g---------Ta~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl---~~~~h~~D~~~IR 122 (178)
T 1vmd_A 55 KHELYATGT---------TGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPL---EPQAHDVDVKALI 122 (178)
T ss_dssp TSEEEECHH---------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSS---SCCTTSCCHHHHH
T ss_pred CCEEEEchH---------HHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEEccCcc---CCCcccccHHHHH
Confidence 578888763 6778888 999999883 33578889999999998654310 3222234457888
Q ss_pred HHHHhcCCeEEEe
Q 018280 275 LCAKFHNILFYVA 287 (358)
Q Consensus 275 ~~Ak~~~iPvyV~ 287 (358)
-+|-.||||++--
T Consensus 123 R~A~~~~IP~~Tn 135 (178)
T 1vmd_A 123 RIATVYNIPVAIT 135 (178)
T ss_dssp HHHHHTTCCEESS
T ss_pred HHHHHcCCCEEeC
Confidence 8999999999854
No 28
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=74.00 E-value=5.3 Score=33.08 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=50.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEc------chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
.|+++.+++ |++.|.+ .|++|+.+. |..++..+++++||+||-=-|-. |.-...--.+.+=
T Consensus 31 Gf~l~AT~g---------Ta~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~Ir 98 (134)
T 2xw6_A 31 RFPLVATGT---------TGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPL---TAQPHEPDVQALL 98 (134)
T ss_dssp TSCEEECHH---------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTT---TCCTTSCCSHHHH
T ss_pred CCEEEEccH---------HHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcc---cCCCccchHHHHH
Confidence 466676653 5666777 788888773 23477888999999998644300 3222133457788
Q ss_pred HHHHhcCCeEEEe
Q 018280 275 LCAKFHNILFYVA 287 (358)
Q Consensus 275 ~~Ak~~~iPvyV~ 287 (358)
-+|-.|+||++--
T Consensus 99 R~A~~~~IP~~T~ 111 (134)
T 2xw6_A 99 RVCDVHGVPLATN 111 (134)
T ss_dssp HHHHHHTCCEECS
T ss_pred HHHHHcCCCeEcC
Confidence 8999999999853
No 29
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=71.06 E-value=11 Score=33.48 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=45.4
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEec-CCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEEE
Q 018280 185 GYGTALGVIRALHSEGVLERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~~~~V~v~E-srP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (358)
|.|+-+..|..+.++|...+|..+= .+|...|.+ .-.+.|||+..+. |..+...+++.++|.+++
T Consensus 14 G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ 89 (215)
T 3tqr_A 14 GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLK----RAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVL 89 (215)
T ss_dssp SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHH----HHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEE
Confidence 4567666555555555444544333 367665543 2457899999874 456667788889999998
Q ss_pred cce-eee
Q 018280 254 GAD-RVA 259 (358)
Q Consensus 254 GAd-~i~ 259 (358)
.+= +|+
T Consensus 90 agy~~il 96 (215)
T 3tqr_A 90 AGFMRKL 96 (215)
T ss_dssp SSCCSCC
T ss_pred ccchhhC
Confidence 763 444
No 30
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=70.64 E-value=42 Score=32.91 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=50.7
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecc---------c-ccHHHHHHHHhc--CCeEEEeccCccccCCCCCCCccccccC
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANK---------I-GTYSLALCAKFH--NILFYVAAPLTSIDLTLSSGQEIVIEER 308 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nk---------i-GT~~lA~~Ak~~--~iPvyV~a~~~k~~~~~~~~~~i~ie~r 308 (358)
+.+.+...+..|.||=-|-.+|.+.|- + |...++.-|+.- |+++++ .++.. ..|..
T Consensus 293 ~~i~~~~~~~~i~~a~evD~~G~vn~~~~g~~~~~G~GG~~D~~~gA~~~~ggk~ii~-~~~t~-----k~G~i------ 360 (436)
T 2oas_A 293 SIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQMDFIRGAGLSEGGRSVIA-LPSTA-----AGGRI------ 360 (436)
T ss_dssp HHHTTSTTEEEEECCSEEETTCCEECSEETTEECSCCTTHHHHHHHHHHSTTCEEEEE-CCSEE-----TTTTE------
T ss_pred HHHhCCCCcEEEeccceecCCCCeeeeecCCeeecccccHHHHhhhhhhcCCCcEEEE-Eeeec-----CCCCC------
Confidence 345445567999999888888876543 2 334556777654 565554 44331 11210
Q ss_pred CcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCccC
Q 018280 309 SAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSL 356 (358)
Q Consensus 309 ~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~ 356 (358)
+ .+.... +++ ..=.||.+.++.||||.|+..+
T Consensus 361 -s-kiv~~~--------~~g------~~v~t~~~~v~~vvTE~Gva~l 392 (436)
T 2oas_A 361 -S-RIASVL--------SPG------AGVVTTRAHVHYIVTEYGAANL 392 (436)
T ss_dssp -E-SEESSC--------CTT------CCEEECTTTCCEEEETTEEEEC
T ss_pred -C-EEeecc--------CCC------CCcccCcccCCEEECCCEEEEC
Confidence 0 111100 000 1235889999999999999754
No 31
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=70.40 E-value=36 Score=26.56 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=36.1
Q ss_pred HHHhCCC-CeEEE--cchHHH---H-hhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRI-PATLI--ADSAAA---A-LMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI-~vtlI--~Dsa~~---~-~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|+ +++.. ..+... . ..++.++|++++|+..- |.+-. -.|+..-.+ .++-++||+|+
T Consensus 77 ~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 3456788 66543 222222 2 33447999999998753 22222 256654444 56667999986
No 32
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=69.46 E-value=5.5 Score=32.08 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEE-EcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtl-I~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
.++.+|.++|-.|...- +....|.+.|..|+- ..|..-+ ..+++.++|.|++ |--+++++ | +.++-.-
T Consensus 6 ~r~~rILiVdD~~~~~~--~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~l 75 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAM--LIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADIL 75 (123)
T ss_dssp CCCCCEEEESSSTTTSH--HHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHH
T ss_pred CCCCEEEEEeCCHHHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHH
Confidence 46778999999888743 346678899999864 3444322 4556789999988 44555332 2 4566666
Q ss_pred HhcCCeEEEecc
Q 018280 278 KFHNILFYVAAP 289 (358)
Q Consensus 278 k~~~iPvyV~a~ 289 (358)
|+.++||++++.
T Consensus 76 r~~~ipvI~lTa 87 (123)
T 2lpm_A 76 AERNVPFIFATG 87 (123)
T ss_dssp HHTCCSSCCBCT
T ss_pred HcCCCCEEEEec
Confidence 778999988754
No 33
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=68.17 E-value=52 Score=32.18 Aligned_cols=81 Identities=23% Similarity=0.182 Sum_probs=41.4
Q ss_pred CEEEEcceeeecCCceecc-cccHH---------HHHHHHh-cCCeEEEeccCccccCCCCCCCccccccCCcccceecc
Q 018280 249 SAVIVGADRVAANGDTANK-IGTYS---------LALCAKF-HNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSR 317 (358)
Q Consensus 249 d~VivGAd~i~~nG~v~nk-iGT~~---------lA~~Ak~-~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~ 317 (358)
|..|+||=-|-.+|.+.|- +|+.. ++.-|+. .+=-+++++++.. ..|.. + .+....
T Consensus 307 dv~i~ga~evD~~G~vn~~~~g~~~~~G~GG~~D~~~~A~~s~~gk~ii~~~~t~-----k~G~~-------s-~iv~~~ 373 (439)
T 3d3u_A 307 MVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPSTA-----KKGTE-------S-RIVPIL 373 (439)
T ss_dssp EEEEECCSCEETTSCC--------------CHHHHHHHHTTSTTCEEEEECCSEE-----TTTTE-------E-SEESSC
T ss_pred cEEEehheEecCCCCEeeeccCCeeecccccHHHHhhcccccCCCeEEEEEeeec-----CCCCC-------C-eEeECc
Confidence 8999999999999988654 44432 2444442 2334666666542 11210 0 111000
Q ss_pred CCCCccccCCCceeecceeeecCCCCccEEEeCCCCccC
Q 018280 318 GGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVSL 356 (358)
Q Consensus 318 ~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~~ 356 (358)
.++ .+=.||-.-++.||||.|++.+
T Consensus 374 --------~~g------~~v~~~~~~v~~vVTE~gva~l 398 (439)
T 3d3u_A 374 --------KEG------ACVTTGRNEVDYVVTEYGVARL 398 (439)
T ss_dssp --------C------------CCSTTCSEEEETTEEEEC
T ss_pred --------cCC------CCceeCCCcceEEECCCEEEEe
Confidence 000 1334667899999999999865
No 34
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=65.62 E-value=14 Score=37.08 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecC-----CCCCcchHHHHH
Q 018280 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSET-----RPFNQGSRLTAF 222 (358)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~Es-----rP~~qG~rlta~ 222 (358)
...+.|+.+++..|. ||++|-. |.|.-..+...+ ..++. -.+.+|+ .|........ .
T Consensus 261 ~~~~~Ia~raA~el~-----dG~~vnl----------GIGiP~~v~~~~-~~~~~-l~l~~E~G~~g~~p~~~~~~~d-~ 322 (481)
T 3k6m_A 261 NVRERIIKRAALEFE-----DGMYANL----------GIGIPLLASNFI-SPNMT-VHLQSENGILGLGPYPLQNEVD-A 322 (481)
T ss_dssp -CHHHHHHHHGGGCC-----TTEEEEE----------CTTHHHHHGGGC-CTTSC-EEEEETTTEEEECCCCCGGGCC-T
T ss_pred CHHHHHHHHHHHhcC-----CCCEEEE----------ccCHHHHHHhhh-ccCCc-EEEEECCcEeCCccCCCCCccC-c
Confidence 457789999999999 8987755 344222222222 23443 3445564 3432211111 1
Q ss_pred HHHhCCC-CeEE------EcchHHHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 223 ELVHDRI-PATL------IADSAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 223 eL~~~GI-~vtl------I~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
.+...|- .+++ +..+..+.+++.+++|..++||=-|-.+|.+.|-
T Consensus 323 ~~in~Gk~~~t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~ 374 (481)
T 3k6m_A 323 DLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANW 374 (481)
T ss_dssp TCBCTTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECS
T ss_pred ccccCCCceEeccccceecCCHHHeeeecCCCeEEEEechHhccCCCCcccc
Confidence 2333442 2332 3344455567788999999999999999998653
No 35
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=63.97 E-value=56 Score=32.89 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCcCEEEEcceeeecCCceeccc--c---------cHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccce
Q 018280 246 GRVSAVIVGADRVAANGDTANKI--G---------TYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 314 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nki--G---------T~~lA~~Ak~~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~ 314 (358)
++.|..|.||=-|-.+|.+.|-. | ...++.-|+. ++++.|+.+ |. .+ .+.
T Consensus 365 ~~ldv~ilga~eVD~~Gnvn~~~~~gg~~~~G~GG~~D~~~gA~~----~ii~~~~t~-------g~-------~s-kiV 425 (519)
T 2hj0_A 365 NQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAAKM----SLVISPLVR-------GR-------IP-TFV 425 (519)
T ss_dssp GGCSEEEECCSEECTTCCEECSBCTTCCBCCBCTTHHHHHHHSSE----EEEECCSEE-------TT-------EE-SBC
T ss_pred ccCCeeeeeeEEEccCCceeeeeccCCeEecccccHHHHhhccCe----EEEEEcccC-------CC-------CC-eec
Confidence 78999999999999899888765 2 2334555553 566666542 11 01 111
Q ss_pred eccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcc
Q 018280 315 CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVS 355 (358)
Q Consensus 315 ~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~ 355 (358)
. .+ .+=.||-+.++.||||.|++.
T Consensus 426 ~------------~~-----~~vtt~~~~V~~VVTE~Gva~ 449 (519)
T 2hj0_A 426 D------------KV-----NTVITPGTSVDVVVTEVGIAI 449 (519)
T ss_dssp S------------SC-----SSCSBCGGGCCEEECSSCEEE
T ss_pred c------------CC-----CCcccCCCCCCEEECCCEEEE
Confidence 0 01 123456789999999999986
No 36
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=63.69 E-value=13 Score=32.86 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (358)
|.|+.+..|..+.++|. ..+|..+= .+|...|.+ ...+.|||+..+. |..+...+++.++|.++
T Consensus 16 G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv 91 (209)
T 4ds3_A 16 GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLA----KAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIIC 91 (209)
T ss_dssp SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHH----HHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44676665555555554 34443333 377766643 2457899999875 34566677778999998
Q ss_pred Ecce-eee
Q 018280 253 VGAD-RVA 259 (358)
Q Consensus 253 vGAd-~i~ 259 (358)
+.+= +|+
T Consensus 92 ~agy~~il 99 (209)
T 4ds3_A 92 LAGYMRLL 99 (209)
T ss_dssp ESSCCSCC
T ss_pred EeccccCc
Confidence 8763 444
No 37
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=63.67 E-value=27 Score=32.07 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=58.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHHhCCCCeEEEc--c-hHHHHhhhc
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIA--D-SAAAALMKD 245 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~eL~~~GI~vtlI~--D-sa~~~~m~~ 245 (358)
.+||..+-+|.+ | ..+++.+.++| .+|+++--.|.....++ ...+|...|+.+...- | ..+..++++
T Consensus 11 ~~IlVtGatG~i-----G--~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~ 81 (346)
T 3i6i_A 11 GRVLIAGATGFI-----G--QFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE 81 (346)
T ss_dssp CCEEEECTTSHH-----H--HHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred CeEEEECCCcHH-----H--HHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence 356655544432 2 23456666667 45666544432211111 1235667777654322 2 345556633
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcC-CeEEEe
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-iPvyV~ 287 (358)
.++|.||- +.+..|-.|+..+.-+|+..| ++.+|.
T Consensus 82 ~~~d~Vi~-------~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 82 HEIDIVVS-------TVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp TTCCEEEE-------CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred CCCCEEEE-------CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 35665554 444569999999999999999 998885
No 38
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=62.70 E-value=13 Score=31.83 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=35.8
Q ss_pred HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.+..++ .++|.||--|-....+---+|-.|+..+.-+|+..+++-+|...+
T Consensus 56 ~~~~~~--~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 56 EMAKQL--HGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp HHHTTT--TTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHH--cCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 455666 678888876644433333468899999999999999876655443
No 39
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=61.83 E-value=88 Score=30.66 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=15.8
Q ss_pred ecCCCCccEEEeCCCCccC
Q 018280 338 VTPANLITGIITEKVSVSL 356 (358)
Q Consensus 338 vtP~~lIt~iITE~Gi~~~ 356 (358)
.||.+.++.||||.|++..
T Consensus 383 ~~~~~~v~~vVTE~Gva~L 401 (434)
T 3eh7_A 383 TTLRNEVDYVVTEYGIAQL 401 (434)
T ss_dssp EECTTTCCEEEETTEEEEC
T ss_pred eeCccceeEEEcccEEEEC
Confidence 3667889999999999754
No 40
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=59.52 E-value=25 Score=30.30 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch--HHHHhhhc
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--AAAALMKD 245 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds--a~~~~m~~ 245 (358)
.|.+||..+-+|.+ | ..+.+.+.++|. +|+++.-+|. + ..++.+.|+...+..|- .+...+
T Consensus 20 ~~~~ilVtGatG~i-----G--~~l~~~L~~~G~--~V~~~~R~~~----~--~~~~~~~~~~~~~~~Dl~~~~~~~~-- 82 (236)
T 3e8x_A 20 QGMRVLVVGANGKV-----A--RYLLSELKNKGH--EPVAMVRNEE----Q--GPELRERGASDIVVANLEEDFSHAF-- 82 (236)
T ss_dssp -CCEEEEETTTSHH-----H--HHHHHHHHHTTC--EEEEEESSGG----G--HHHHHHTTCSEEEECCTTSCCGGGG--
T ss_pred CCCeEEEECCCChH-----H--HHHHHHHHhCCC--eEEEEECChH----H--HHHHHhCCCceEEEcccHHHHHHHH--
Confidence 35677766655422 3 234566666674 6666654332 2 23466667722334442 333445
Q ss_pred CCcCEEEEcceeeecCC----ceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 246 GRVSAVIVGADRVAANG----DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG----~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+++|.||--|-....+. --+|-.||..+.-+|+..+++-+|...++
T Consensus 83 ~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 83 ASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp TTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred cCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 67777776553211000 01378899999999999998767665553
No 41
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=59.15 E-value=30 Score=31.89 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHH---HHH---CCCeeEEEEe-cCC---CCCcchHHHHHHHHhCCCCeE-EEcc
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRA---LHS---EGVLERAYCS-ETR---PFNQGSRLTAFELVHDRIPAT-LIAD 236 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~---a~~---~g~~~~V~v~-Esr---P~~qG~rlta~eL~~~GI~vt-lI~D 236 (358)
.+.++|- | |+|-.|+...++. |.+ ...-+++.|. |.| |...+.--.+++|.+.|+.|- |+.|
T Consensus 72 ~~~~~lp--N-----Tag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d 144 (265)
T 1wv2_A 72 DRYTILP--N-----TAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD 144 (265)
T ss_dssp TTSEEEE--E-----CTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred cCCEECC--c-----CCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3677763 3 2345688765544 344 2335666666 544 333333224778999999988 5665
Q ss_pred h-HHHHhhhcCCcCEEEE-cceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 237 S-AAAALMKDGRVSAVIV-GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 237 s-a~~~~m~~~~vd~Viv-GAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
+ ..+.-+..-.++.|+- |+. |-.+=++.| -..+..+.+..++||++-+.-.+
T Consensus 145 d~~~akrl~~~G~~aVmPlg~p-IGsG~Gi~~---~~lI~~I~e~~~vPVI~eGGI~T 198 (265)
T 1wv2_A 145 DPIIARQLAEIGCIAVMPLAGL-IGSGLGICN---PYNLRIILEEAKVPVLVDAGVGT 198 (265)
T ss_dssp CHHHHHHHHHSCCSEEEECSSS-TTCCCCCSC---HHHHHHHHHHCSSCBEEESCCCS
T ss_pred CHHHHHHHHHhCCCEEEeCCcc-CCCCCCcCC---HHHHHHHHhcCCCCEEEeCCCCC
Confidence 4 4555565566777765 431 211111222 24567777778999999766554
No 42
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=58.99 E-value=17 Score=29.88 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=35.0
Q ss_pred HHhCCCCeEEEc--ch---HHHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 224 LVHDRIPATLIA--DS---AAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 224 L~~~GI~vtlI~--Ds---a~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
+.+.|++++... .. .+..+.++.++|+||+|+..- |.+-. -.|+-.-.+ .++-++||+|+-+..+
T Consensus 96 ~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 96 CHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNAD 166 (175)
T ss_dssp HHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCGG
T ss_pred HHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCcC
Confidence 445677765332 21 222333345899999998753 22222 256655444 4556799999855443
No 43
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=58.93 E-value=20 Score=27.10 Aligned_cols=79 Identities=9% Similarity=0.071 Sum_probs=49.9
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
.+|.++|..|.... .....|.+.|..+....+..-+ ..+++.+.|.|++..+ ++++ -|--.+..+-+.++
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~ 73 (120)
T 3f6p_A 3 KKILVVDDEKPIAD--ILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYD 73 (120)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCC
T ss_pred CeEEEEECCHHHHH--HHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 36778887765432 2355688889988876665443 3455678999988543 3332 24344444555678
Q ss_pred CeEEEeccC
Q 018280 282 ILFYVAAPL 290 (358)
Q Consensus 282 iPvyV~a~~ 290 (358)
+|+++++..
T Consensus 74 ~~ii~~t~~ 82 (120)
T 3f6p_A 74 MPIIMLTAK 82 (120)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEECC
Confidence 999988653
No 44
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=58.16 E-value=1.4e+02 Score=29.60 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=47.6
Q ss_pred hhhcCCcCEEEEcceeeecCCceeccc---------c-cHHHHHHHHh-cCCeEEEeccCccccCCCCCCCccccccCCc
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANKI---------G-TYSLALCAKF-HNILFYVAAPLTSIDLTLSSGQEIVIEERSA 310 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nki---------G-T~~lA~~Ak~-~~iPvyV~a~~~k~~~~~~~~~~i~ie~r~~ 310 (358)
++.+......|.||=-|-.+|.+.|-. | ..-.+.-|+. .|=..+++.|+.. ..|. +
T Consensus 325 ~i~~~~~~i~in~a~evd~~G~v~~~~~~~~~~~G~GG~~Df~~gA~~s~ggk~ii~~~s~~-----k~G~-i------- 391 (455)
T 3qli_A 325 IIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQLDFVRGAYASKGGRSIIATPSTA-----AKGT-V------- 391 (455)
T ss_dssp HHTTSTTEEEEEECSEEETTSCEECCCSTTCCCGGGSSHHHHHHHHHHSTTCEEEEECCSEE-----TTTT-E-------
T ss_pred HHhCCCCcEEeeeeEEEecCCCeeeeccCCeeecCcChhHHHHHHHhhcCCCcEEEEEeCcc-----CCCC-C-------
Confidence 453344556888988887777776543 3 2334554554 4555566666543 1121 0
Q ss_pred ccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcc
Q 018280 311 KELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKVSVS 355 (358)
Q Consensus 311 ~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~ 355 (358)
..+.. .+. .| =.||...++.||||.|+..
T Consensus 392 s~Iv~------------~~~--~~--vtt~~~~v~~vvTE~Gva~ 420 (455)
T 3qli_A 392 SRIIP------------RID--GP--VTTPRIDTHYIVTEFGAVN 420 (455)
T ss_dssp ESEES------------CCS--SS--CSBCTTTCCEEEETTEEEE
T ss_pred CeEec------------cCC--CC--cccCcccccEEEeccEEEE
Confidence 01110 011 01 1369999999999999874
No 45
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=57.98 E-value=19 Score=31.97 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=43.9
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEEEc
Q 018280 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~VivG 254 (358)
|.|+.+..|..+.+++...+|..+=|.|...+.+ ...+.|||+..+. |..+...+++.++|.+++.
T Consensus 21 G~gsnl~all~~~~~~~~~eI~~Vis~~~a~~~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivla 96 (215)
T 3da8_A 21 GTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAE----IAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSA 96 (215)
T ss_dssp SCCHHHHHHHHHSSTTCSEEEEEEEESSCCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CChHHHHHHHHHHhccCCCeEEEEEeCCchHHHH----HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEc
Confidence 4467666555554333334555555555433322 2457899999885 4566677888899999886
Q ss_pred ce-eee
Q 018280 255 AD-RVA 259 (358)
Q Consensus 255 Ad-~i~ 259 (358)
+= +|+
T Consensus 97 gy~~iL 102 (215)
T 3da8_A 97 GFMRIL 102 (215)
T ss_dssp ECCSCC
T ss_pred CchhhC
Confidence 53 444
No 46
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=57.91 E-value=24 Score=33.05 Aligned_cols=83 Identities=13% Similarity=-0.036 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch--------------------------------
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS-------------------------------- 237 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds-------------------------------- 237 (358)
+.+.+.+.++|....++..+ . . ...+.+.|+++.-++..
T Consensus 38 l~La~~L~~~Gh~V~v~~~~---~-----~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (415)
T 3rsc_A 38 LTVVTELVRRGHRVSYVTAG---G-----F-AEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVLR 108 (415)
T ss_dssp HHHHHHHHHTTCEEEEEECG---G-----G-HHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCH---H-----H-HHHHHhcCCEEEeccccccccccchhhccccHHHHHHHHHHHHHHHHHH
Confidence 44556777788877766521 1 1 23466789888877631
Q ss_pred HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
.+..++++.+.|.|++ | + .-.+...++|+..|||++...+.+-+
T Consensus 109 ~l~~~l~~~~PDlVi~--d-----~-----~~~~~~~~aA~~~giP~v~~~~~~~~ 152 (415)
T 3rsc_A 109 ATAEALDGDVPDLVLY--D-----D-----FPFIAGQLLAARWRRPAVRLSAAFAS 152 (415)
T ss_dssp HHHHHHSSSCCSEEEE--E-----S-----TTHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCCEEEE--C-----c-----hhhhHHHHHHHHhCCCEEEEEecccc
Confidence 1222344567888774 3 1 11233467799999999988755543
No 47
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=57.68 E-value=5.4 Score=38.83 Aligned_cols=47 Identities=23% Similarity=0.137 Sum_probs=32.6
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
...|+||.|=-++ |.....---...+|-.||.|+|||+++|.+...+
T Consensus 286 ~~ADLVITGEG~~--D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~~~ 332 (383)
T 3cwc_A 286 ADADLVITGEGRI--DSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTAD 332 (383)
T ss_dssp HHCSEEEECCEES--CC----CHHHHHHHHHHHHTTCCEEEEEEECC--
T ss_pred cCCCEEEECCCCC--cCcCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 6899999997665 3333333334668889999999999999876543
No 48
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=57.55 E-value=23 Score=31.21 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEecC-CCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v~Es-rP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (358)
|.|+.+..|..+.+++. ...|..+=| +|...|.+ ...+.|||+.++. |..+...++..++|.++
T Consensus 9 G~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (209)
T 1meo_A 9 GTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLD----KAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVC 84 (209)
T ss_dssp SSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHH----HHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEE
Confidence 45666666656655553 345443333 34444532 3468899998764 24555667778999988
Q ss_pred Ecce-eee
Q 018280 253 VGAD-RVA 259 (358)
Q Consensus 253 vGAd-~i~ 259 (358)
+.+= +|+
T Consensus 85 ~a~y~~il 92 (209)
T 1meo_A 85 LAGFMRIL 92 (209)
T ss_dssp EESCCSCC
T ss_pred EcchhhhC
Confidence 7653 443
No 49
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=56.06 E-value=22 Score=31.58 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHHhCCCCeEEEc-----chHHHHhhhcCCcCEEEEcce-
Q 018280 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA-----DSAAAALMKDGRVSAVIVGAD- 256 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~eL~~~GI~vtlI~-----Dsa~~~~m~~~~vd~VivGAd- 256 (358)
|.|+.+..|..+.+++. ..+|..+= .+|...|.+ ...+.|||+..+. |..+...+++.++|.+++.+=
T Consensus 17 G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~----~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 17 GRGSNLEALAKAFSTEESSVVISCVISNNAEARGLL----IAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHH----HHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHH----HHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 34666665555555553 34444333 367665642 2457899999864 456667788889999988764
Q ss_pred eee
Q 018280 257 RVA 259 (358)
Q Consensus 257 ~i~ 259 (358)
+|+
T Consensus 93 ~IL 95 (215)
T 3kcq_A 93 SIL 95 (215)
T ss_dssp SCC
T ss_pred eEe
Confidence 444
No 50
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=55.66 E-value=26 Score=32.42 Aligned_cols=83 Identities=17% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch--------------------------------
Q 018280 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS-------------------------------- 237 (358)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds-------------------------------- 237 (358)
+.+.+.+.++|....|+..+ .. ...+.+.|+++..++..
T Consensus 22 ~~La~~L~~~GheV~v~~~~--------~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (402)
T 3ia7_A 22 LGLVSELARRGHRITYVTTP--------LF-ADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILR 92 (402)
T ss_dssp HHHHHHHHHTTCEEEEEECH--------HH-HHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCH--------HH-HHHHHHcCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 33446667788877776632 12 33467889988877631
Q ss_pred HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccc
Q 018280 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (358)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~ 293 (358)
.+..++++.+.|.|+. |. ...+...++|+..|||++...+.+-.
T Consensus 93 ~l~~~l~~~~pD~Vi~--d~----------~~~~~~~~aA~~~giP~v~~~~~~~~ 136 (402)
T 3ia7_A 93 AAEEALGDNPPDLVVY--DV----------FPFIAGRLLAARWDRPAVRLTGGFAA 136 (402)
T ss_dssp HHHHHHTTCCCSEEEE--ES----------TTHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHHhccCCCEEEE--Cc----------hHHHHHHHHHHhhCCCEEEEeccccc
Confidence 1223344567888774 21 12233567899999999988755443
No 51
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=54.58 E-value=30 Score=27.09 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHhCCCCe---EE-Ecc----hHHHHhhhcCCcCEEEEcceeeecCCceecc-cccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIPA---TL-IAD----SAAAALMKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~v---tl-I~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nk-iGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|+++ +. +.. ..+....++.++|++++|+..- |.+-.. .|+..-. +.++-++||+|+
T Consensus 78 ~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~-vl~~~~~pVlvV 147 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGT---NGDKSLLLGSVAQR-VAGSAHCPVLVV 147 (147)
T ss_dssp HHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCT---TCCSCCCCCHHHHH-HHHHCSSCEEEC
T ss_pred HHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ccccceeeccHHHH-HHhhCCCCEEEC
Confidence 355678877 43 222 2233334456899999998752 333332 4665444 455667999985
No 52
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=54.22 E-value=21 Score=32.68 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc-hHHHHHHHHhCCCCeEEE-cc----hHHHH
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLI-AD----SAAAA 241 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG-~rlta~eL~~~GI~vtlI-~D----sa~~~ 241 (358)
.+.+||..+-+|.+ | ..+++.+.++|...+|++...++.... .++ . .+... -.++++ .| ..+..
T Consensus 23 ~~~~vlVtGatG~i-----G--~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l-~-~~~~~-~~~~~~~~Dl~d~~~~~~ 92 (346)
T 4egb_A 23 NAMNILVTGGAGFI-----G--SNFVHYMLQSYETYKIINFDALTYSGNLNNV-K-SIQDH-PNYYFVKGEIQNGELLEH 92 (346)
T ss_dssp -CEEEEEETTTSHH-----H--HHHHHHHHHHCTTEEEEEEECCCTTCCGGGG-T-TTTTC-TTEEEEECCTTCHHHHHH
T ss_pred CCCeEEEECCccHH-----H--HHHHHHHHhhCCCcEEEEEeccccccchhhh-h-hhccC-CCeEEEEcCCCCHHHHHH
Confidence 45677776655432 2 234566667787788888865543222 111 1 12111 123333 22 34555
Q ss_pred hhhcCCcCEEEEcceeeecCC--------ceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 242 LMKDGRVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG--------~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
+++..++|.||--|-....+. --.|-.||..+.-+|+.++++-+|.+.+
T Consensus 93 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 93 VIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp HHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 664345999887664332111 1357889999999999999985554433
No 53
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=54.05 E-value=33 Score=30.65 Aligned_cols=110 Identities=21% Similarity=0.115 Sum_probs=61.7
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC-----------------c
Q 018280 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN-----------------Q 215 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~-----------------q 215 (358)
++..+.+.|. +.+|+..+- |.+ -..+.+.+...|.. ++.+.+..+.. .
T Consensus 21 ~g~~~q~~l~------~~~VlVvG~-Gg~-------G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~ 85 (249)
T 1jw9_B 21 FDFDGQEALK------DSRVLIVGL-GGL-------GCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQP 85 (249)
T ss_dssp THHHHHHHHH------HCEEEEECC-SHH-------HHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSB
T ss_pred cCHHHHHHHh------CCeEEEEee-CHH-------HHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcH
Confidence 4566666776 356777763 322 23344555555743 34444433310 1
Q ss_pred chHHHHHHHHhC--CCCeEEEc----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 216 GSRLTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 216 G~rlta~eL~~~--GI~vtlI~----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
-....+..|.+. ++.++.+. +.....++ .++|.||.+.|..- --+.+.-.|+.+++|++.++
T Consensus 86 Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~--~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 86 KVESARDALTRINPHIAITPVNALLDDAELAALI--AEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--HTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH--hCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEee
Confidence 112224455553 45565543 33344566 78999998876542 23567778899999998764
No 54
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=53.93 E-value=65 Score=23.89 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=56.5
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc--c-hHHHHhhhc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKD 245 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~--D-sa~~~~m~~ 245 (358)
+.+|+..+- |.+ | ..+.+.+.+.| ..+|++.+-.|. + ...+.+.|+...... | ..+...+
T Consensus 5 ~~~v~I~G~-G~i-----G--~~~~~~l~~~g-~~~v~~~~r~~~----~--~~~~~~~~~~~~~~d~~~~~~~~~~~-- 67 (118)
T 3ic5_A 5 RWNICVVGA-GKI-----G--QMIAALLKTSS-NYSVTVADHDLA----A--LAVLNRMGVATKQVDAKDEAGLAKAL-- 67 (118)
T ss_dssp CEEEEEECC-SHH-----H--HHHHHHHHHCS-SEEEEEEESCHH----H--HHHHHTTTCEEEECCTTCHHHHHHHT--
T ss_pred cCeEEEECC-CHH-----H--HHHHHHHHhCC-CceEEEEeCCHH----H--HHHHHhCCCcEEEecCCCHHHHHHHH--
Confidence 356666553 422 2 33456666666 356777765432 2 234556676653321 2 3455566
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.++|.||..+ | ...+..++..|+..|++++.++..
T Consensus 68 ~~~d~vi~~~------~----~~~~~~~~~~~~~~g~~~~~~~~~ 102 (118)
T 3ic5_A 68 GGFDAVISAA------P----FFLTPIIAKAAKAAGAHYFDLTED 102 (118)
T ss_dssp TTCSEEEECS------C----GGGHHHHHHHHHHTTCEEECCCSC
T ss_pred cCCCEEEECC------C----chhhHHHHHHHHHhCCCEEEecCc
Confidence 6888888765 2 123578889999999999976543
No 55
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=53.61 E-value=40 Score=29.83 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHHHCCC---eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEE
Q 018280 185 GYGTALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAV 251 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~---~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~V 251 (358)
|.|+-+..|..+.++|. .+.++++ .+|...+.+ ...+.|||+..+. |..+...++..++|.+
T Consensus 11 g~Gsnl~ali~~~~~~~l~~eI~~Vis-n~~~a~v~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dli 85 (211)
T 3p9x_A 11 GSGTNAEAIIQSQKAGQLPCEVALLIT-DKPGAKVVE----RVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFV 85 (211)
T ss_dssp TTCHHHHHHHHHHHTTCCSSEEEEEEE-SCSSSHHHH----HHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHHcCCCCcEEEEEEE-CCCCcHHHH----HHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEE
Confidence 45777776666666664 3343344 456543322 2457899998775 3455667778899999
Q ss_pred EEcce-eeec
Q 018280 252 IVGAD-RVAA 260 (358)
Q Consensus 252 ivGAd-~i~~ 260 (358)
++.+= +|++
T Consensus 86 v~agy~~Il~ 95 (211)
T 3p9x_A 86 VLAGYMRLVG 95 (211)
T ss_dssp EESSCCSCCC
T ss_pred EEeCchhhcC
Confidence 87764 4543
No 56
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=53.56 E-value=35 Score=27.33 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHhCCCCeEEEc--c---hHHHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEec
Q 018280 224 LVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 224 L~~~GI~vtlI~--D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+...|++++... . ..+..+.++.++|++++|+..- |.+-. -.|+-.-.+ .++-.+||+|+=
T Consensus 92 ~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~---~~~~~~~~GSv~~~v-l~~~~~pVlvv~ 158 (162)
T 1mjh_A 92 LEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGK---TNLKEILLGSVTENV-IKKSNKPVLVVK 158 (162)
T ss_dssp HHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCS---SCCTTCSSCHHHHHH-HHHCCSCEEEEC
T ss_pred HHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCC---CCccceEecchHHHH-HHhCCCCEEEEe
Confidence 456788765432 1 2233344456999999998753 22222 256655444 455689999983
No 57
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=52.94 E-value=25 Score=28.53 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHhCCCCeEE---Ecc----hHHHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEec
Q 018280 224 LVHDRIPATL---IAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 224 L~~~GI~vtl---I~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+...|++++. +.. ..+..+.++.++|+||+|+..- |.+-. -.|+..-. +.++-++||+|+-
T Consensus 87 ~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~-vl~~~~~PVlvv~ 155 (170)
T 2dum_A 87 VKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMR-VLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHH-HHHHCSSCEEEEC
T ss_pred HHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHH-HHHhCCCCEEEEc
Confidence 4456888765 222 2233344456999999998753 22322 24654444 4556789999983
No 58
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=51.84 E-value=28 Score=32.33 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=23.1
Q ss_pred hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
++++.+.|.|+. | . -.+..+++|+..|||++...
T Consensus 109 ~l~~~~PD~Vv~--~-----~------~~~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 109 LAEAWRPSVLLV--D-----V------CALIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp HHHHHCCSEEEE--E-----T------TCHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCEEEe--C-----c------chhHHHHHHHHhCCCEEEEe
Confidence 344557887765 2 1 23456778999999998874
No 59
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=51.19 E-value=82 Score=24.27 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHhCCCCe--EEEcc----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 224 LVHDRIPA--TLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 224 L~~~GI~v--tlI~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.+.|+++ +.+.. ..+..+.++.++|++++|+. .+ ...+.|+.. .-+.++-++||+|+
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~---~~--~~~~lgs~~-~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH---QD--FWSKLMSST-RQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC---CC--CHHHHHHHH-HHHHTTCCSEEEEE
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC---Cc--hhhhhcchH-HHHHhcCCCCEEEe
Confidence 34568875 23322 22333344578999999987 22 234467433 34567778999997
No 60
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=50.50 E-value=1.1e+02 Score=25.31 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=37.5
Q ss_pred HHHHHhCCCCeEEEc-ch-HHHHhhhc-CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 221 AFELVHDRIPATLIA-DS-AAAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 221 a~eL~~~GI~vtlI~-Ds-a~~~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
+..|...|+++..++ |. .....+.. .+=|.||+ +...|.. .-+..++-.||..|+|+++++.
T Consensus 58 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 58 GHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIG----VSVWRYL---RDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp HHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEE----ECCSSCC---HHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCCEEEEeC
Confidence 345666788888887 33 22222211 34455543 3345643 3466778899999999999865
No 61
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=50.37 E-value=11 Score=34.62 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=53.0
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH---HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA---ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~---~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (358)
+|.++|+..+.+|+......|.+.|++|+++....+. .-+ .+.|.||++ | +.. +.+.-.++..+.+.
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L--~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL--AKQDLVILS-D-YPA-----ERMTAQAIDQLVTMV 76 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH--HTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHH
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH--hcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHH
Confidence 5666677767677766566799999999999987663 345 799999986 2 111 23334444444433
Q ss_pred -cCCeEEEeccCccc
Q 018280 280 -HNILFYVAAPLTSI 293 (358)
Q Consensus 280 -~~iPvyV~a~~~k~ 293 (358)
.|-=++++.....+
T Consensus 77 ~~GGgLi~~gG~~s~ 91 (259)
T 3rht_A 77 KAGCGLVMLGGWESY 91 (259)
T ss_dssp HTTCEEEEECSTTSS
T ss_pred HhCCeEEEecCcccc
Confidence 47778887654444
No 62
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=49.92 E-value=48 Score=26.75 Aligned_cols=62 Identities=8% Similarity=0.103 Sum_probs=38.0
Q ss_pred HHHhCCCCeEE---Ecc----hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIPATL---IAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~vtl---I~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|+++.. +.. ..+....++.++|++++|+..--.-+.. -.|+..-. +.++-.+||+|+
T Consensus 86 ~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~~-vl~~a~~PVLvV 154 (155)
T 3dlo_A 86 IIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVARD-VILKANKPVICI 154 (155)
T ss_dssp HHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHHH-HHHHCSSCEEEE
T ss_pred HHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHHH-HHHhCCCCEEEe
Confidence 45668888764 322 2333344456899999999875221111 24654444 456778999986
No 63
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=49.68 E-value=52 Score=25.07 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=48.8
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 199 EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
.....+|.++|..|.... .+ ...|.+.|+.+....+..-+ ..+++...|.|| +.+. -|--.+..+-
T Consensus 15 ~~~~~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~~-----~g~~~~~~l~ 81 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGG-EI-EKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIK 81 (137)
T ss_dssp CTTCSEEEEECSCHHHHH-HH-HHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECST-----THHHHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHH-HH-HHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcCc-----cHHHHHHHHH
Confidence 355678888888776532 23 55688889988876654332 344557789888 2222 2322333333
Q ss_pred Hhc-CCeEEEeccCc
Q 018280 278 KFH-NILFYVAAPLT 291 (358)
Q Consensus 278 k~~-~iPvyV~a~~~ 291 (358)
+.. ++|+++++...
T Consensus 82 ~~~~~~~ii~ls~~~ 96 (137)
T 2pln_A 82 EKHSSIVVLVSSDNP 96 (137)
T ss_dssp HHSTTSEEEEEESSC
T ss_pred hcCCCccEEEEeCCC
Confidence 335 89999986543
No 64
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=48.37 E-value=56 Score=24.56 Aligned_cols=82 Identities=16% Similarity=0.030 Sum_probs=49.2
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH-H
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-K 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A-k 278 (358)
...+|.++|..|.... .....|.+.|..+....+..-+ ..+++.+.|.|++..+---.+ |--.+..+- +
T Consensus 6 ~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-------g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRS--LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN-------GLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHH--HHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCC-------HHHHHHHHHhc
Confidence 3457888887776532 2355688889988877665444 345667899999976532222 323333332 2
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 77 ~~~~~ii~~t~~~ 89 (130)
T 3eod_A 77 GDQTPVLVISATE 89 (130)
T ss_dssp TCCCCEEEEECCC
T ss_pred CCCCCEEEEEcCC
Confidence 3479999986543
No 65
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.23 E-value=48 Score=26.14 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=51.0
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (358)
+..+|.++|..|.... .....|.+.|+.|....+..-+ ..+++.++|.||+..+- .++ -|--.+..+-+.
T Consensus 6 ~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~lr~~ 76 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAE--HLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM--PEM-----DGYALCRWLKGQ 76 (154)
T ss_dssp -CCEEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC--SSS-----CHHHHHHHHHHS
T ss_pred CCCcEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhC
Confidence 4568888888776532 2356688889998877765444 34556789999987642 222 133333333332
Q ss_pred ---cCCeEEEeccCc
Q 018280 280 ---HNILFYVAAPLT 291 (358)
Q Consensus 280 ---~~iPvyV~a~~~ 291 (358)
.++|+++++...
T Consensus 77 ~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 77 PDLRTIPVILLTILS 91 (154)
T ss_dssp TTTTTSCEEEEECCC
T ss_pred CCcCCCCEEEEECCC
Confidence 479999987543
No 66
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=48.12 E-value=33 Score=30.81 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=18.2
Q ss_pred CcCEEEEcceeeecCCceecc
Q 018280 247 RVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~v~nk 267 (358)
++|..++.|...-.+|.+.=.
T Consensus 151 ~~DvAli~a~~aD~~GN~~~~ 171 (235)
T 3rrl_A 151 TGDYGLIKAYKSDTLGNLVFR 171 (235)
T ss_dssp CEEEEEEECSEEETTCCEECC
T ss_pred CCeEEEEEeeecCCCceEEEe
Confidence 899999999999999987543
No 67
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=47.71 E-value=16 Score=33.87 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCC--ce
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG--DT 264 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG--~v 264 (358)
..+...++.+.+.|.+.-|++++.-|..+-.++ .....+.|+ .++-.|+.+.+- +...+.-.....+..-| ++
T Consensus 81 ~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~A~~~gi--~viGPNc~Gii~--~~~~~~~~~~~~~~~~G~va~ 155 (294)
T 2yv1_A 81 PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGV--KIIGPNTPGIAS--PKVGKLGIIPMEVLKEGSVGM 155 (294)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHHHHHHTC--EEECSSCCEEEE--TTTEEEECCCGGGCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEcCCCceeec--cCcceeeecccCCCCCCCEEE
Confidence 466788899988888766777777665444444 334555666 577666766544 43333322223333445 46
Q ss_pred ecccccHHHHH--HHHhcCCeEEEe
Q 018280 265 ANKIGTYSLAL--CAKFHNILFYVA 287 (358)
Q Consensus 265 ~nkiGT~~lA~--~Ak~~~iPvyV~ 287 (358)
+.+.||+..++ .+...|+.|--+
T Consensus 156 vSqSG~l~~~~~~~~~~~g~G~s~~ 180 (294)
T 2yv1_A 156 VSRSGTLTYEIAHQIKKAGFGVSTC 180 (294)
T ss_dssp EESCSHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCHHHHHHHHHHHHhCCCCeEEE
Confidence 99999998877 566788887643
No 68
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=47.53 E-value=37 Score=31.63 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCcEEEEecCCCccccccc-ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc
Q 018280 168 SKFSVLTHCNTGSLATAGY-GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~-~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~ 235 (358)
+.+.||-.+..+ .|. .....+.+.+.++|...+|++.+ . + ...+...|+++.-+.
T Consensus 14 ~~MrIl~~~~~~----~gh~~~~~~La~~L~~~GheV~v~~~~---~-----~-~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 14 SHMRILVIAGCS----EGFVMPLVPLSWALRAAGHEVLVAASE---N-----M-GPTVTGAGLPFAPTC 69 (398)
T ss_dssp -CCEEEEECCSS----HHHHGGGHHHHHHHHHTTCEEEEEEEG---G-----G-HHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCC----cchHHHHHHHHHHHHHCCCEEEEEcCH---H-----H-HHHHHhCCCeeEecC
Confidence 346787665431 111 12345567777789888777642 1 2 335677899988776
No 69
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=47.48 E-value=24 Score=33.48 Aligned_cols=16 Identities=13% Similarity=-0.050 Sum_probs=13.0
Q ss_pred HHHHHhcCCeEEEecc
Q 018280 274 ALCAKFHNILFYVAAP 289 (358)
Q Consensus 274 A~~Ak~~~iPvyV~a~ 289 (358)
+++|+..|||++.+..
T Consensus 109 ~~~A~~lgiP~v~~~~ 124 (404)
T 3h4t_A 109 RSMAEKLGIPYRYTVL 124 (404)
T ss_dssp HHHHHHHTCCEEEEES
T ss_pred hhHHhhcCCCEEEEEc
Confidence 6789999999986643
No 70
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=46.77 E-value=51 Score=28.98 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (358)
|.|+.+..|..+.++|. ..+|..+= .+|...|.+ ...+.|||+..+. |..+...+++.++|.++
T Consensus 9 g~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (212)
T 1jkx_A 9 GNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE----RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVV 84 (212)
T ss_dssp SCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHH----HHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEE
T ss_pred CCcHHHHHHHHHHHcCCCCceEEEEEeCCCchHHHH----HHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEE
Confidence 34555655555555553 33433222 344444532 3468899998875 34566677778999998
Q ss_pred Ecce-eee
Q 018280 253 VGAD-RVA 259 (358)
Q Consensus 253 vGAd-~i~ 259 (358)
+.+= +|+
T Consensus 85 ~agy~~il 92 (212)
T 1jkx_A 85 LAGFMRIL 92 (212)
T ss_dssp ESSCCSCC
T ss_pred EeChhhhC
Confidence 8654 454
No 71
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=46.35 E-value=41 Score=25.26 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=49.6
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH--
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-- 278 (358)
..+|.++|..|.... .....|.+.|..|....+..-+ ..+++.++|.||+..+- .+. -|--.+..+-+
T Consensus 3 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~l~~~~ 73 (127)
T 3i42_A 3 LQQALIVEDYQAAAE--TFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PDT-----SGLALVKQLRALP 73 (127)
T ss_dssp CEEEEEECSCHHHHH--HHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSS-----BHHHHHHHHHHSC
T ss_pred cceEEEEcCCHHHHH--HHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCC-----CHHHHHHHHHhhh
Confidence 357888887776432 2355688889988877765443 34556789999987643 221 23233333333
Q ss_pred -hcCCeEEEeccCc
Q 018280 279 -FHNILFYVAAPLT 291 (358)
Q Consensus 279 -~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 74 ~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 74 MEKTSKFVAVSGFA 87 (127)
T ss_dssp CSSCCEEEEEECC-
T ss_pred ccCCCCEEEEECCc
Confidence 3579999986543
No 72
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=46.34 E-value=63 Score=24.79 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=51.2
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHH-hhhc-CCcCEEEEcceeeecCCceecccccHHHHHHHHh
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~-~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (358)
..+|.++|..|.... .....|.+.|+.+....+..-+. .+++ ..+|.||+..+- .+| .-|.-.+..+-+.
T Consensus 5 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~~----~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQAK--TIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIEL--GEG----MDGVQTALAIQQI 76 (140)
T ss_dssp -CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSC--SSS----CCHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHH--HHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccC--CCC----CCHHHHHHHHHhC
Confidence 457888888776532 23556888899888777654442 3434 678999987542 222 2233334444445
Q ss_pred cCCeEEEeccCcc
Q 018280 280 HNILFYVAAPLTS 292 (358)
Q Consensus 280 ~~iPvyV~a~~~k 292 (358)
.++|+++++....
T Consensus 77 ~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 77 SELPVVFLTAHTE 89 (140)
T ss_dssp CCCCEEEEESSSS
T ss_pred CCCCEEEEECCCC
Confidence 7899999876443
No 73
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=46.31 E-value=81 Score=31.36 Aligned_cols=97 Identities=23% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHHHHHHCCCeeEEEEecCCC-CCcchHHHHHHHHhCCCCeEEE-cc----hHHHHhhhcCCcCEEEEcceeeecCCce-
Q 018280 192 VIRALHSEGVLERAYCSETRP-FNQGSRLTAFELVHDRIPATLI-AD----SAAAALMKDGRVSAVIVGADRVAANGDT- 264 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP-~~qG~rlta~eL~~~GI~vtlI-~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v- 264 (358)
+.+.+.++|.. +|+++--++ ..++..-...+|.+.|..++++ +| .++..+++.+++|.||-.|- +..+|.+
T Consensus 275 lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~VVh~AG-v~~~~~~~ 352 (511)
T 2z5l_A 275 LARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPNAVFHTAG-ILDDAVID 352 (511)
T ss_dssp HHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSEEEECCC-CCCCBCGG
T ss_pred HHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcEEEECCc-ccCCcccc
Confidence 44555566643 344443222 2233322356788889888775 33 45556665567999988774 3334422
Q ss_pred ------------ecccccHHHHHHHHhc-CCeEEEeccC
Q 018280 265 ------------ANKIGTYSLALCAKFH-NILFYVAAPL 290 (358)
Q Consensus 265 ------------~nkiGT~~lA~~Ak~~-~iPvyV~a~~ 290 (358)
.|-.|+..+.-+++.+ +..++|...+
T Consensus 353 ~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 353 TLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 3567888887777776 6777776544
No 74
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.25 E-value=49 Score=25.29 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=51.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH---
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA--- 277 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A--- 277 (358)
..+|.++|..|...- .....|.+.|+.+....+..-+ ..+++.+.|.||+..+- .++ -|--.+..+-
T Consensus 6 ~~~iLivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDPDIAR--LLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL--PDQ-----DGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC--SSS-----CHHHHHHHHHTSG
T ss_pred CCCEEEEcCCHHHHH--HHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhCc
Confidence 467888888776532 2355688889998877765443 34566789999987542 222 1322333333
Q ss_pred HhcCCeEEEeccCc
Q 018280 278 KFHNILFYVAAPLT 291 (358)
Q Consensus 278 k~~~iPvyV~a~~~ 291 (358)
...++|+++++...
T Consensus 77 ~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 77 RTRDLAIVVVSANA 90 (140)
T ss_dssp GGTTCEEEEECTTH
T ss_pred ccCCCCEEEEecCC
Confidence 23589999987654
No 75
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=46.24 E-value=1.2e+02 Score=26.35 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHC---CCeeEEEEec---CCCCC--c-chHHHHHHHH-hCCCCeEEEcchHH----------HHhhhcC
Q 018280 187 GTALGVIRALHSE---GVLERAYCSE---TRPFN--Q-GSRLTAFELV-HDRIPATLIADSAA----------AALMKDG 246 (358)
Q Consensus 187 ~ta~~~l~~a~~~---g~~~~V~v~E---srP~~--q-G~rlta~eL~-~~GI~vtlI~Dsa~----------~~~m~~~ 246 (358)
+|...+.+.+.+. -++.+|+-.+ +-|.. + -..+..+.|. +.+++..++++... ...++++
T Consensus 38 ~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~ 117 (234)
T 2ri0_A 38 STPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQY 117 (234)
T ss_dssp STTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEECCCTTCSCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhcCCCCCCCHHHHHHHHHHHHHhC
Confidence 4556666665442 2356666544 23322 1 1223344444 45888888876421 1223335
Q ss_pred CcCEEEEcceeeecCCceec-cccc
Q 018280 247 RVSAVIVGADRVAANGDTAN-KIGT 270 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~v~n-kiGT 270 (358)
++|.+++|- -.||.+.. .-|+
T Consensus 118 ~~Dl~llGi---G~dgh~a~l~p~~ 139 (234)
T 2ri0_A 118 PIDLQILGI---GRNAHIGFNEPGT 139 (234)
T ss_dssp CCSEEEECC---CTTSCBTTBCTTC
T ss_pred CCCEEEEcc---CCCCCchhcCCCC
Confidence 799999994 37776644 3343
No 76
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=45.70 E-value=1e+02 Score=23.91 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=25.4
Q ss_pred hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.++.++|++++|+..- +| +---.|+..-.+ .++-++||+|+
T Consensus 104 ~a~~~~~dliV~G~~~~--~~-~~~~~Gs~~~~v-l~~~~~pVlvv 145 (150)
T 3tnj_A 104 IAEQENVDLIVVGSHGR--HG-LALLLGSTANSV-LHYAKCDVLAV 145 (150)
T ss_dssp HHHHTTCSEEEEEEC-----------CCCHHHHH-HHHCSSEEEEE
T ss_pred HHHHcCCCEEEEecCCC--CC-cCeEecchHHHH-HHhCCCCEEEE
Confidence 34456899999998763 22 223467765555 45567999997
No 77
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=45.67 E-value=20 Score=33.23 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=64.8
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcC
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
|.++.+-+. ..+...++.+.+.|.+.-|++++.-|..+-.++ .....+.|+ .++-.|+.+.+- +...
T Consensus 73 DvaIi~vp~--------~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~A~~~gi--~viGPNc~Gii~--~~~~ 139 (297)
T 2yv2_A 73 NTSIVFVPA--------PFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRF-VNYARQKGA--TIIGPNCPGAIT--PGQA 139 (297)
T ss_dssp CEEEECCCG--------GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHHHHTC--EEECSSSCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEcCCCCeeEc--cccc
Confidence 555555443 567888999999888777777777665444444 334556665 577667766544 4333
Q ss_pred EEEEcceeeecCC--ceecccccHHHHHH--HHhcCCeEEE
Q 018280 250 AVIVGADRVAANG--DTANKIGTYSLALC--AKFHNILFYV 286 (358)
Q Consensus 250 ~VivGAd~i~~nG--~v~nkiGT~~lA~~--Ak~~~iPvyV 286 (358)
+.-.....+..-| +++.+.||+..+++ +...|+.|--
T Consensus 140 ~~~~~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 180 (297)
T 2yv2_A 140 KVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQST 180 (297)
T ss_dssp EEESCCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred ceeecccCCCCCCCEEEEECCHHHHHHHHHHHHHcCCCeeE
Confidence 3322223333445 46999999987764 5667888763
No 78
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=44.87 E-value=53 Score=32.72 Aligned_cols=98 Identities=21% Similarity=0.162 Sum_probs=55.8
Q ss_pred HHHHHHHCCCeeEEEEecC-CCCCcchHHHHHHHHhCCCCeEEEc-c----hHHHHhhh----cCCcCEEEEcceeeecC
Q 018280 192 VIRALHSEGVLERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA-D----SAAAALMK----DGRVSAVIVGADRVAAN 261 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~Es-rP~~qG~rlta~eL~~~GI~vtlI~-D----sa~~~~m~----~~~vd~VivGAd~i~~n 261 (358)
+-+.+.++|.. +|+++-- .+..++..-...+|.+.|..++++. | .++..+++ ++++|.||-.|-....+
T Consensus 255 lA~~La~~Ga~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~ld~vVh~AGv~~~~ 333 (496)
T 3mje_A 255 VARRLAEQGAA-HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAPLTAVFHSAGVAHDD 333 (496)
T ss_dssp HHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSCEEEEEECCCCCCSC
T ss_pred HHHHHHHCCCc-EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCCCeEEEECCcccCCC
Confidence 34555566653 3443332 2333443334668889999888763 3 23444443 24688888776433234
Q ss_pred Cce-------------ecccccHHHHHHHHhcCCeEEEeccC
Q 018280 262 GDT-------------ANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 262 G~v-------------~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
+.+ .|-.|++.+.-+.+.++..++|...|
T Consensus 334 ~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS 375 (496)
T 3mje_A 334 APVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSS 375 (496)
T ss_dssp CCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 432 34567777777777777777776543
No 79
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=44.77 E-value=38 Score=26.64 Aligned_cols=81 Identities=9% Similarity=-0.007 Sum_probs=49.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (358)
..+|.++|..|.... .+ ...|.+.|+.|....+..-+ ..+++..+|.||+..+- .+ .-|.-.+..+-+.
T Consensus 3 ~~~ILivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 3 APSVFLIDDDRDLRK-AM-QQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALD 73 (155)
T ss_dssp -CEEEEECSCHHHHH-HH-HHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHH-HH-HHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhC
Confidence 457888888776532 23 55688899998877664433 34455678999987642 21 1233333333333
Q ss_pred cCCeEEEeccCc
Q 018280 280 HNILFYVAAPLT 291 (358)
Q Consensus 280 ~~iPvyV~a~~~ 291 (358)
.++|+++++...
T Consensus 74 ~~~pii~ls~~~ 85 (155)
T 1qkk_A 74 PDLPMILVTGHG 85 (155)
T ss_dssp TTSCEEEEECGG
T ss_pred CCCCEEEEECCC
Confidence 479999987644
No 80
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=44.49 E-value=51 Score=25.83 Aligned_cols=83 Identities=13% Similarity=-0.067 Sum_probs=50.6
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (358)
+..+|.++|..|.... .....|.+.|+.+....+..-+ ..+++..+|.||+..+- .+. -|--.+..+.+.
T Consensus 6 ~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~ 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILN--SLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PEM-----GGEVFLEQVAKS 76 (154)
T ss_dssp SCCEEEEECSCHHHHH--HHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SSS-----CHHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHH--HHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----CHHHHHHHHHHh
Confidence 4567888888776532 2355688889988866654333 34555679999987643 221 232333333333
Q ss_pred -cCCeEEEeccCcc
Q 018280 280 -HNILFYVAAPLTS 292 (358)
Q Consensus 280 -~~iPvyV~a~~~k 292 (358)
.++|+++++....
T Consensus 77 ~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 77 YPDIERVVISGYAD 90 (154)
T ss_dssp CTTSEEEEEECGGG
T ss_pred CCCCcEEEEecCCC
Confidence 4799999876543
No 81
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=44.37 E-value=63 Score=23.86 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=46.7
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
.+|.+.|..|.... .+ ...|...|..+....+..-+ ..+++.+.|.|++..+ +++. -|--.+..+-+..+
T Consensus 3 ~~ilivdd~~~~~~-~l-~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~ 73 (122)
T 1zgz_A 3 HHIVIVEDEPVTQA-RL-QSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERST 73 (122)
T ss_dssp CEEEEECSSHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCC
T ss_pred cEEEEEECCHHHHH-HH-HHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCC
Confidence 36777887765432 23 45577889888776654433 3345567899988653 2322 13223333434557
Q ss_pred CeEEEeccC
Q 018280 282 ILFYVAAPL 290 (358)
Q Consensus 282 iPvyV~a~~ 290 (358)
+|+++++..
T Consensus 74 ~~ii~~s~~ 82 (122)
T 1zgz_A 74 VGIILVTGR 82 (122)
T ss_dssp CEEEEEESS
T ss_pred CCEEEEECC
Confidence 999887654
No 82
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=44.29 E-value=52 Score=32.63 Aligned_cols=96 Identities=13% Similarity=0.033 Sum_probs=59.0
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH-----CCCeeEEEEec---------CC---------
Q 018280 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS-----EGVLERAYCSE---------TR--------- 211 (358)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~-----~g~~~~V~v~E---------sr--------- 211 (358)
+.++++|+ +|++|.+.+.+ |+. ..++..+.+ .-++++++..= .+
T Consensus 30 eEAv~lIk-----dGdtV~~gG~~------g~P--~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~ 96 (455)
T 3qli_A 30 EEAVSSIA-----SGSHLSMGMFA------AEP--PALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKP 96 (455)
T ss_dssp HHHTTTCC-----TTCEEEECSGG------GSC--HHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEE
T ss_pred HHHHHhCC-----CCCEEEECCcc------cCH--HHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEE
Confidence 34567888 99999886543 233 333333322 23467776421 11
Q ss_pred -CCCcchHHHHHHHHhCC--------CCeEEEcchHHHHhhhc-CCcCEEEEcceeeecCCcee
Q 018280 212 -PFNQGSRLTAFELVHDR--------IPATLIADSAAAALMKD-GRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 212 -P~~qG~rlta~eL~~~G--------I~vtlI~Dsa~~~~m~~-~~vd~VivGAd~i~~nG~v~ 265 (358)
|++.|.. .+++.+.| +...-+--|.++.+++. .++|.+++.|...-.+|.+.
T Consensus 97 ~~~f~~~~--~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s 158 (455)
T 3qli_A 97 YSMFVTAV--ERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFS 158 (455)
T ss_dssp EESSCCHH--HHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEE
T ss_pred eeCcCChh--HHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEE
Confidence 3445532 35566666 55555567788877743 57999999999988888764
No 83
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=43.52 E-value=35 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.080 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D 236 (358)
.+...|..|+++|.+.+|+++.......+.. ...|.+.||++.....
T Consensus 73 ~i~~aL~~aa~rGV~Vrii~D~~~~~~~~~~--~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 73 QLGRAVQLLHQRGVRVRVITDCDYMALNGSQ--IGLLRKAGIQVRHDQD 119 (196)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCC---CCH--HHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHHcCCcEEEEEecccccccHHH--HHHHHhcCCCcccccc
Confidence 4566788888899999999876544444544 3579999999876543
No 84
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=43.37 E-value=24 Score=27.72 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=28.8
Q ss_pred hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.++++++.+||+..|+ -.|+ ..-+-..|+.++||+|.+
T Consensus 32 ai~~gka~lViiA~D~-~~~~-------~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 32 FVKHGEGKLVVLAGNI-PKDL-------EEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHTTCCSEEEECTTC-BHHH-------HHHHHHHHHHTTCCEEEC
T ss_pred HHHcCCceEEEEeCCC-CHHH-------HHHHHHHHHHcCCCEEEE
Confidence 3455889999999887 4442 355666799999999986
No 85
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=43.19 E-value=1.3e+02 Score=27.77 Aligned_cols=55 Identities=16% Similarity=-0.025 Sum_probs=33.0
Q ss_pred CcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc
Q 018280 169 KFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~-ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D 236 (358)
.+.||-.+..+ .|.- .++.+.+.+.++|....|+..+ . + ...+.+.|+++..++.
T Consensus 20 ~MrIl~~~~~~----~Gh~~~~~~la~~L~~~GheV~v~~~~---~-----~-~~~~~~~g~~~~~~~~ 75 (412)
T 3otg_A 20 HMRVLFASLGT----HGHTYPLLPLATAARAAGHEVTFATGE---G-----F-AGTLRKLGFEPVATGM 75 (412)
T ss_dssp SCEEEEECCSS----HHHHGGGHHHHHHHHHTTCEEEEEECG---G-----G-HHHHHHTTCEEEECCC
T ss_pred eeEEEEEcCCC----cccHHHHHHHHHHHHHCCCEEEEEccH---H-----H-HHHHHhcCCceeecCc
Confidence 36787665331 1221 2345567777788777776543 1 2 3456778999888874
No 86
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=42.77 E-value=18 Score=33.47 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCC--ce
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG--DT 264 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG--~v 264 (358)
..+..+++.+.+.|.+.-|+.++.-|..+-.++ .....+.|+ .++-.|+.+.+- +...+.-..+..+..-| ++
T Consensus 75 ~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~a~~~gi--~vigPNc~Gii~--~~~~~~~~~~~~~~~~G~va~ 149 (288)
T 1oi7_A 75 PAAADAALEAAHAGIPLIVLITEGIPTLDMVRA-VEEIKALGS--RLIGGNCPGIIS--AEETKIGIMPGHVFKRGRVGI 149 (288)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHHHHHHTC--EEEESSSCEEEE--TTTEEEESSCGGGCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEeCCCCeEEc--CCCceeEEcccCCCCCCCEEE
Confidence 456778899988888777777877665443344 334455665 577677776554 44333333233333445 46
Q ss_pred ecccccHHHHHH--HHhcCCeEEEe
Q 018280 265 ANKIGTYSLALC--AKFHNILFYVA 287 (358)
Q Consensus 265 ~nkiGT~~lA~~--Ak~~~iPvyV~ 287 (358)
+++.||+..+++ +...|+.|--+
T Consensus 150 vsqSG~l~~~~~~~~~~~g~G~s~~ 174 (288)
T 1oi7_A 150 ISRSGTLTYEAAAALSQAGLGTTTT 174 (288)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999988775 67788887643
No 87
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=42.59 E-value=57 Score=25.05 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=48.3
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhc
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (358)
..+|.++|..|.... .+ ...|.+.|+.+....+..-+ ..+.+.+.|.|++..+- ++. -|--.+..+-+..
T Consensus 4 ~~~Ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l--~~~-----~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQ-KL-KGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIIL--SDG-----DGWTLCKKIRNVT 74 (136)
T ss_dssp CCEEEEECSCHHHHH-HH-HHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEE--TTE-----EHHHHHHHHHTTC
T ss_pred CCeEEEEcCCHHHHH-HH-HHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCC-----CHHHHHHHHccCC
Confidence 457888887775422 23 45677889988776654433 33445678999986542 321 1322233333344
Q ss_pred CCeEEEeccCc
Q 018280 281 NILFYVAAPLT 291 (358)
Q Consensus 281 ~iPvyV~a~~~ 291 (358)
.+|+++++...
T Consensus 75 ~~~ii~ls~~~ 85 (136)
T 2qzj_A 75 TCPIVYMTYIN 85 (136)
T ss_dssp CCCEEEEESCC
T ss_pred CCCEEEEEcCC
Confidence 89999886543
No 88
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=41.80 E-value=1.1e+02 Score=27.11 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=58.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cc-hHHHHhhhcC
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDG 246 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m~~~ 246 (358)
.+||..+-+|.+ | ..+.+.+.++|. .+|+++.-+|... .+..|...|+.+... .| ..+..++ .
T Consensus 6 ~~ilVtGatG~i-----G--~~l~~~L~~~g~-~~V~~~~R~~~~~----~~~~l~~~~~~~~~~D~~d~~~l~~~~--~ 71 (299)
T 2wm3_A 6 KLVVVFGGTGAQ-----G--GSVARTLLEDGT-FKVRVVTRNPRKK----AAKELRLQGAEVVQGDQDDQVIMELAL--N 71 (299)
T ss_dssp CEEEEETTTSHH-----H--HHHHHHHHHHCS-SEEEEEESCTTSH----HHHHHHHTTCEEEECCTTCHHHHHHHH--T
T ss_pred CEEEEECCCchH-----H--HHHHHHHHhcCC-ceEEEEEcCCCCH----HHHHHHHCCCEEEEecCCCHHHHHHHH--h
Confidence 456666544422 2 234455555552 5666665444321 134566677654321 12 3455667 6
Q ss_pred CcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.+|.|+.-|...-....-.|-.|+..+.-+|+..|++-+|...+.
T Consensus 72 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~ 116 (299)
T 2wm3_A 72 GAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE 116 (299)
T ss_dssp TCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred cCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 788888765321111112344577788888888898877765443
No 89
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=41.19 E-value=49 Score=25.22 Aligned_cols=83 Identities=10% Similarity=-0.008 Sum_probs=51.2
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCC-CCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~G-I~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
....+|.++|..|.... .....|.+.| +.+....+..-+ ..+++.++|.||+..+ ++++ -|--.+..+-
T Consensus 12 ~~~~~ilivdd~~~~~~--~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~ 82 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKR--DVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDL-----LGKPGIVEAR 82 (135)
T ss_dssp -CCEEEEEECSCHHHHH--HHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGG-----GGSTTHHHHH
T ss_pred CCCcEEEEEcCCHHHHH--HHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCc-----hHHHHHHHHH
Confidence 34578888888876532 2355688899 988866665443 2345678999998654 2322 2333333333
Q ss_pred Hh-cCCeEEEeccCc
Q 018280 278 KF-HNILFYVAAPLT 291 (358)
Q Consensus 278 k~-~~iPvyV~a~~~ 291 (358)
+. .++|+++++...
T Consensus 83 ~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 83 ALWATVPLIAVSDEL 97 (135)
T ss_dssp GGGTTCCEEEEESCC
T ss_pred hhCCCCcEEEEeCCC
Confidence 33 379999986643
No 90
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=40.88 E-value=38 Score=26.01 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=49.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (358)
..+|.++|..|.... .+ ...|.+.|+.|....+..-+ ..+++.++|.||+..+ +.+| +.-|--.+..+-+.
T Consensus 6 ~~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~---~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 6 HPIIYLVDHQKDARA-AL-SKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAH--LEDK---KDSGIELLETLVKRG 78 (136)
T ss_dssp -CEEEEECSCHHHHH-HH-HHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETT--GGGB---TTHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCHHHHH-HH-HHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCc--CCCC---CccHHHHHHHHHhCC
Confidence 468888888776532 23 55688889988877665544 2345567888888643 2331 02233333333332
Q ss_pred cCCeEEEeccCcc
Q 018280 280 HNILFYVAAPLTS 292 (358)
Q Consensus 280 ~~iPvyV~a~~~k 292 (358)
.++|+++++....
T Consensus 79 ~~~~ii~~s~~~~ 91 (136)
T 3kto_A 79 FHLPTIVMASSSD 91 (136)
T ss_dssp CCCCEEEEESSCC
T ss_pred CCCCEEEEEcCCC
Confidence 4799999876443
No 91
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=40.87 E-value=54 Score=28.79 Aligned_cols=89 Identities=9% Similarity=-0.025 Sum_probs=49.7
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cc-hHHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
+++.+.++....+|+++..+|.. . .+|...++.+... .| ..+..++ .++|.|+--|-.- -+.-+|-.
T Consensus 16 l~~~L~~~~~g~~V~~~~r~~~~----~--~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a~~~--~~~~~n~~ 85 (287)
T 2jl1_A 16 VIQHLLKKVPASQIIAIVRNVEK----A--STLADQGVEVRHGDYNQPESLQKAF--AGVSKLLFISGPH--YDNTLLIV 85 (287)
T ss_dssp HHHHHTTTSCGGGEEEEESCTTT----T--HHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECCCCC--SCHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEcCHHH----H--hHHhhcCCeEEEeccCCHHHHHHHH--hcCCEEEEcCCCC--cCchHHHH
Confidence 45566555113556666544321 1 2344556543321 12 3455667 6788887654321 11134778
Q ss_pred ccHHHHHHHHhcCCeEEEeccC
Q 018280 269 GTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 269 GT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
||..+.-+|+.++++-+|...+
T Consensus 86 ~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 86 QHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999865555443
No 92
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=40.50 E-value=49 Score=25.97 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhh---cCCcCEEEEcceeeecCCceeccc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMK---DGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~---~~~vd~VivGAd~i~~nG~v~nki 268 (358)
+.+.+.++|. +|++.|..|. + ..++.+.|+++.. .|..-...++ -.++|.|++..+ +.-
T Consensus 21 la~~L~~~g~--~V~~id~~~~----~--~~~~~~~~~~~~~-gd~~~~~~l~~~~~~~~d~vi~~~~---------~~~ 82 (141)
T 3llv_A 21 LVRELTAAGK--KVLAVDKSKE----K--IELLEDEGFDAVI-ADPTDESFYRSLDLEGVSAVLITGS---------DDE 82 (141)
T ss_dssp HHHHHHHTTC--CEEEEESCHH----H--HHHHHHTTCEEEE-CCTTCHHHHHHSCCTTCSEEEECCS---------CHH
T ss_pred HHHHHHHCCC--eEEEEECCHH----H--HHHHHHCCCcEEE-CCCCCHHHHHhCCcccCCEEEEecC---------CHH
Confidence 4456666664 5667776542 2 3457777876543 3433222221 156788876544 222
Q ss_pred ccHHHHHHHHhcCCeEEEe
Q 018280 269 GTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 269 GT~~lA~~Ak~~~iPvyV~ 287 (358)
....++..||+.+.+.+++
T Consensus 83 ~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHHHhCCceEEE
Confidence 3456788888888655544
No 93
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=39.68 E-value=65 Score=24.60 Aligned_cols=80 Identities=8% Similarity=0.014 Sum_probs=48.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (358)
..+|.+.|..|.... .....|.+.|+.+....+..-+ ..+++...|.||+.. +.+. -|.-.+..+-+.
T Consensus 4 ~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~-----~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFL--AVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGE-----ESLNLIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTH-----HHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHH--HHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCC-----cHHHHHHHHHHHC
Confidence 457778887765432 2355688889988866654333 445567799999875 3321 132223333333
Q ss_pred cCCeEEEeccCc
Q 018280 280 HNILFYVAAPLT 291 (358)
Q Consensus 280 ~~iPvyV~a~~~ 291 (358)
.++|+++++...
T Consensus 74 ~~~pii~ls~~~ 85 (142)
T 2qxy_A 74 PDTKVAVLSAYV 85 (142)
T ss_dssp TTCEEEEEESCC
T ss_pred CCCCEEEEECCC
Confidence 469999987654
No 94
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=39.57 E-value=68 Score=23.46 Aligned_cols=78 Identities=6% Similarity=0.023 Sum_probs=46.4
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCC
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~i 282 (358)
+|.+.|..|.... .....|...|..+....+..-+ ..+.+.+.|.|++..+- +++ -|--.+..+-+..++
T Consensus 3 ~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (120)
T 2a9o_A 3 KILIVDDEKPISD--IIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEI-----DGLEVAKTIRKTSSV 73 (120)
T ss_dssp EEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSC--SSS-----CHHHHHHHHHHHCCC
T ss_pred eEEEEcCCHHHHH--HHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccC--CCC-----CHHHHHHHHHhCCCC
Confidence 5777777765422 2245677889888776654333 23445678999886542 222 132233344445789
Q ss_pred eEEEeccC
Q 018280 283 LFYVAAPL 290 (358)
Q Consensus 283 PvyV~a~~ 290 (358)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (120)
T 2a9o_A 74 PILMLSAK 81 (120)
T ss_dssp CEEEEESC
T ss_pred CEEEEecC
Confidence 99988654
No 95
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=38.95 E-value=95 Score=22.86 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=46.6
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
.+|.+.|..|.... .....|.+.|+.+....+..-+ ..+++.+.|.|++..+- ++. -|--.+..+-+..+
T Consensus 4 ~~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (123)
T 1xhf_A 4 PHILIVEDELVTRN--TLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL--PGK-----NGLLLARELREQAN 74 (123)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSS-----CHHHHHHHHHHHCC
T ss_pred ceEEEEeCCHHHHH--HHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCC--CCC-----CHHHHHHHHHhCCC
Confidence 36778887765422 2245577788887766654333 33455678999886542 221 23333333333468
Q ss_pred CeEEEeccC
Q 018280 282 ILFYVAAPL 290 (358)
Q Consensus 282 iPvyV~a~~ 290 (358)
+|+++++..
T Consensus 75 ~~ii~~s~~ 83 (123)
T 1xhf_A 75 VALMFLTGR 83 (123)
T ss_dssp CEEEEEESC
T ss_pred CcEEEEECC
Confidence 999987653
No 96
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=38.73 E-value=1.3e+02 Score=26.69 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=56.3
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC---cchHHHHHHHHhCCCCeEEE--cc-hHHHHhh
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN---QGSRLTAFELVHDRIPATLI--AD-SAAAALM 243 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~---qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m 243 (358)
.+||..+-+|.+ | ..+++.+.++| .+|+++.-++.. +..+. ..+|...|+.+... .| ..+..++
T Consensus 5 ~~ilVtGatG~i-----G--~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~~~~ 74 (313)
T 1qyd_A 5 SRVLIVGGTGYI-----G--KRIVNASISLG--HPTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDAL 74 (313)
T ss_dssp CCEEEESTTSTT-----H--HHHHHHHHHTT--CCEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHHH
T ss_pred CEEEEEcCCcHH-----H--HHHHHHHHhCC--CcEEEEECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHHHHH
Confidence 346655545433 2 23455666666 456655433321 11111 12355567643321 22 3455667
Q ss_pred hcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC-CeEEEe
Q 018280 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (358)
Q Consensus 244 ~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-iPvyV~ 287 (358)
..+|.||.-|-... . -.|-.|+..+.-+|+..| ++-+|.
T Consensus 75 --~~~d~vi~~a~~~~-~--~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 75 --KQVDVVISALAGGV-L--SHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp --TTCSEEEECCCCSS-S--STTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred --hCCCEEEECCcccc-c--hhhHHHHHHHHHHHHhcCCCceEEe
Confidence 67888776553221 1 127789999999999998 887774
No 97
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=38.38 E-value=63 Score=24.89 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=50.2
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
.+..+|.++|..|...- .+ ...|.+.|+.|....+..-+ ..+++..+|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~-----~g~~~~~~l~~ 76 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALA-AS-ISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKI-----SGMDLFNSLKK 76 (147)
T ss_dssp --CEEEEEECTTGGGGH-HH-HHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSS-----CHHHHHHHHHT
T ss_pred CCCceEEEEeCCHHHHH-HH-HHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCC-----CHHHHHHHHHc
Confidence 45678888888876532 23 55688889988866654433 33445679999997643 221 23222333332
Q ss_pred ---hcCCeEEEeccCc
Q 018280 279 ---FHNILFYVAAPLT 291 (358)
Q Consensus 279 ---~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 77 ~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 77 NPQTASIPVIALSGRA 92 (147)
T ss_dssp STTTTTSCEEEEESSC
T ss_pred CcccCCCCEEEEeCCC
Confidence 3579999987654
No 98
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=38.07 E-value=30 Score=31.81 Aligned_cols=104 Identities=9% Similarity=0.021 Sum_probs=62.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcC
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (358)
|.++..-+. ..+...+..+.+.|.+.-|+.++.-|..+-.++ .....+.|+ .++-.|..+.+- +...
T Consensus 66 D~viI~tP~--------~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l-~~~A~~~gv--~liGPNc~Gi~~--p~~~ 132 (288)
T 2nu8_A 66 TASVIYVPA--------PFCKDSILEAIDAGIKLIITITEGIPTLDMLTV-KVKLDEAGV--RMIGPNTPGVIT--PGEC 132 (288)
T ss_dssp CEEEECCCG--------GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHHHHTC--EEECSSCCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEecCCcceec--CCcc
Confidence 555555443 567888899989898877777887776554455 334556676 456666665443 3322
Q ss_pred EEEEcceeeecCC--ceecccccHHHHHH--HHhcCCeEEE
Q 018280 250 AVIVGADRVAANG--DTANKIGTYSLALC--AKFHNILFYV 286 (358)
Q Consensus 250 ~VivGAd~i~~nG--~v~nkiGT~~lA~~--Ak~~~iPvyV 286 (358)
+.-.-+..+..-| +++.+.||+..+++ +...++.|--
T Consensus 133 ~~~~~~~~~~~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 2nu8_A 133 KIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQST 173 (288)
T ss_dssp EEESSCTTSCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred eeEecccCCCCCCCEEEEECcHHHHHHHHHHHHhcCCCEEE
Confidence 2211112233345 46888999766654 5677888763
No 99
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=37.67 E-value=23 Score=27.63 Aligned_cols=83 Identities=5% Similarity=-0.066 Sum_probs=51.1
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCC-CCeEEEcchH-HHHhhh-c-CCcCEEEEcceeeecCCceecccccHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSA-AAALMK-D-GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~G-I~vtlI~Dsa-~~~~m~-~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~ 275 (358)
....+|.++|..|.... .....|.+.| +.+....+.. +...+. + ..+|.||+..+ +.++ -|--.+..
T Consensus 18 ~~~~~ilivdd~~~~~~--~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~ 88 (146)
T 4dad_A 18 QGMINILVASEDASRLA--HLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDT-----AELAAIEK 88 (146)
T ss_dssp GGGCEEEEECSCHHHHH--HHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCH-----HHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHH--HHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCc-----cHHHHHHH
Confidence 44678999988876532 2355688888 9988877766 333333 3 78999998654 2221 13223333
Q ss_pred HH-HhcCCeEEEeccCc
Q 018280 276 CA-KFHNILFYVAAPLT 291 (358)
Q Consensus 276 ~A-k~~~iPvyV~a~~~ 291 (358)
+- +..++|+++++...
T Consensus 89 l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 89 LSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHHHCTTCEEEEEESCC
T ss_pred HHHhCCCCcEEEEeCCC
Confidence 32 33479999986543
No 100
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=36.93 E-value=64 Score=29.77 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=43.4
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEE-ecCCCCCcchHHHHHHHHhCCCCeEEEc---------chHHHHhhhcCCcCEEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v-~EsrP~~qG~rlta~eL~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (358)
|.|+.+.-|..+++.|. ..+|.+ .=.+|...+ + ..+.|||+..++ |..+...+++.++|.+++
T Consensus 99 g~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 172 (286)
T 3n0v_A 99 KADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEP--L----AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVIL 172 (286)
T ss_dssp SCCHHHHHHHHHHHTTSSCCEEEEEEESSSTTHH--H----HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCCcEEEEEEeCcHHHHH--H----HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 45777776666666664 234333 333554322 2 247899999886 335566777789999988
Q ss_pred cce-eeec
Q 018280 254 GAD-RVAA 260 (358)
Q Consensus 254 GAd-~i~~ 260 (358)
..- +|++
T Consensus 173 a~y~~il~ 180 (286)
T 3n0v_A 173 ARYMQVLS 180 (286)
T ss_dssp SSCCSCCC
T ss_pred cccccccC
Confidence 754 4543
No 101
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=36.77 E-value=77 Score=24.10 Aligned_cols=82 Identities=9% Similarity=-0.008 Sum_probs=50.0
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (358)
...+|.++|..|.... .+ ...|.+.|+.+....+..-+ ..+++...|.||+..+- .+ .-|--.+..+.+
T Consensus 6 ~~~~iLivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRI-AV-KTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PG-----MDGWDTIRAILDN 76 (142)
T ss_dssp CCCEEEEECSCHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SS-----SCHHHHHHHHHHT
T ss_pred CCCeEEEEcCCHHHHH-HH-HHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhh
Confidence 4567888887776432 23 55688889988777664333 34556778999987643 22 123223333333
Q ss_pred --hcCCeEEEeccCc
Q 018280 279 --FHNILFYVAAPLT 291 (358)
Q Consensus 279 --~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 77 ~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 77 SLEQGIAIVMLTAKN 91 (142)
T ss_dssp TCCTTEEEEEEECTT
T ss_pred cccCCCCEEEEECCC
Confidence 3469999986643
No 102
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=36.72 E-value=90 Score=24.81 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~ 235 (358)
.+...|..|.++|.+.++++..........+-....|.+.|+++....
T Consensus 41 ~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 41 DIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 456678888888999999887654322222222457889999988763
No 103
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=36.65 E-value=1.4e+02 Score=29.29 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHHHHHHCCCeeEEEEecCCC-CCcchHHHHHHHHhCCCCeEEE-cc----hHHHHhhhc----CCcCEEEEcceeeecC
Q 018280 192 VIRALHSEGVLERAYCSETRP-FNQGSRLTAFELVHDRIPATLI-AD----SAAAALMKD----GRVSAVIVGADRVAAN 261 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP-~~qG~rlta~eL~~~GI~vtlI-~D----sa~~~~m~~----~~vd~VivGAd~i~~n 261 (358)
+.+.+.++|.. +|+++--++ ..++.+-...+|.+.|..++++ +| .++..++++ +++|.||-.|- +..+
T Consensus 242 la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ld~VIh~AG-~~~~ 319 (486)
T 2fr1_A 242 IARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAA-TLDD 319 (486)
T ss_dssp HHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEECCC-CCCC
T ss_pred HHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEECCc-cCCC
Confidence 44555555643 344443332 2223222356788889887765 33 344455532 35688887764 3334
Q ss_pred Cce-------------ecccccHHHHHHHHhcCCeEEEeccC
Q 018280 262 GDT-------------ANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 262 G~v-------------~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|.+ .|-.|+..+.-+++.++..++|...+
T Consensus 320 ~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 320 GTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 432 26678888888888888888887655
No 104
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=35.95 E-value=44 Score=26.07 Aligned_cols=81 Identities=14% Similarity=0.006 Sum_probs=46.1
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (358)
+..+|.++|..|.... .....|.+.|..+....+..-+ ..+++.++|.|++..+ ++++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~ 83 (143)
T 3m6m_D 13 RSMRMLVADDHEANRM--VLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVM 83 (143)
T ss_dssp --CEEEEECSSHHHHH--HHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHH--HHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhc
Confidence 4578999988776532 2355688889988877665433 3455678999998643 3322 12222222221
Q ss_pred ----hcCCeEEEeccC
Q 018280 279 ----FHNILFYVAAPL 290 (358)
Q Consensus 279 ----~~~iPvyV~a~~ 290 (358)
...+|+++++..
T Consensus 84 ~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 84 QASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHTTCCCCCEEEEESC
T ss_pred hhccCCCCeEEEEeCC
Confidence 135899988654
No 105
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=35.86 E-value=80 Score=23.58 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=48.1
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcC-CcCEEEEcceeeecCCceecccccHHHHHHHH-
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDG-RVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~-~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (358)
..+|.+.|..|.... .+ ...|...|+.+....+..-+ ..+++. ..|.|++..+- .+| .-|--.+..+-+
T Consensus 5 ~~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~----~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 5 AVTILLADDEAILLL-DF-ESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRF--CQP----PDGWQVARVAREI 76 (132)
T ss_dssp SCEEEEECSSHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCC--SSS----SCHHHHHHHHHHH
T ss_pred CceEEEEcCcHHHHH-HH-HHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeC--CCC----CCHHHHHHHHHhc
Confidence 457888887775432 23 55688889988876654333 334444 79999987542 221 112222333333
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 77 ~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 77 DPNMPIVYISGHA 89 (132)
T ss_dssp CTTCCEEEEESSC
T ss_pred CCCCCEEEEeCCc
Confidence 3479999986543
No 106
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=35.79 E-value=1.5e+02 Score=28.72 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=34.9
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC-cCEEEEcc
Q 018280 193 IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR-VSAVIVGA 255 (358)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~-vd~VivGA 255 (358)
-+.++++| .+|.+.|.++..+.. . ..+|.+.||++.+=.+.. .++ .. +|.||++.
T Consensus 25 A~~l~~~G--~~V~~~D~~~~~~~~-~-~~~L~~~gi~~~~g~~~~--~~~--~~~~d~vv~sp 80 (451)
T 3lk7_A 25 ARLLAKLG--AIVTVNDGKPFDENP-T-AQSLLEEGIKVVCGSHPL--ELL--DEDFCYMIKNP 80 (451)
T ss_dssp HHHHHHTT--CEEEEEESSCGGGCH-H-HHHHHHTTCEEEESCCCG--GGG--GSCEEEEEECT
T ss_pred HHHHHhCC--CEEEEEeCCcccCCh-H-HHHHHhCCCEEEECCChH--Hhh--cCCCCEEEECC
Confidence 35556666 678888988754332 3 347999999887644422 234 34 88887754
No 107
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=35.71 E-value=55 Score=25.32 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=27.2
Q ss_pred hhhcCCcCEEEEcceeeecCCceecc-cccHHHHHHHHhcCCeEEEe
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nk-iGT~~lA~~Ak~~~iPvyV~ 287 (358)
..++.++|++++|+.+ +| +-.. .|+-.- -+.++-++||+|+
T Consensus 101 ~a~~~~~dliV~G~~~---~~-~~~~~~Gs~~~-~v~~~~~~pVlvv 142 (143)
T 3fdx_A 101 LAKSLPADLVIIASHR---PD-ITTYLLGSNAA-AVVRHAECSVLVV 142 (143)
T ss_dssp HHHHTTCSEEEEESSC---TT-CCSCSSCHHHH-HHHHHCSSEEEEE
T ss_pred HHHHhCCCEEEEeCCC---CC-CeeeeeccHHH-HHHHhCCCCEEEe
Confidence 3445689999999974 33 3332 466544 4466778999986
No 108
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.52 E-value=73 Score=24.86 Aligned_cols=83 Identities=13% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH-
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA- 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A- 277 (358)
.+..+|.++|..|.... .....|.+.|+.|....+..-+ ..+++..+|.||+..+- .++ -|--.+..+-
T Consensus 12 ~~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~ 82 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQ--RLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQM-----DGPTLLARIHQ 82 (153)
T ss_dssp CSCCEEEEECSCHHHHH--HHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHH
T ss_pred cCCceEEEECCCHHHHH--HHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--CcC-----cHHHHHHHHHh
Confidence 34568888888776532 2355688889988877665433 34566789999987653 221 1322333332
Q ss_pred HhcCCeEEEeccCc
Q 018280 278 KFHNILFYVAAPLT 291 (358)
Q Consensus 278 k~~~iPvyV~a~~~ 291 (358)
+..++|+++++...
T Consensus 83 ~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 83 QYPSTTRILLTGDP 96 (153)
T ss_dssp HCTTSEEEEECCCC
T ss_pred HCCCCeEEEEECCC
Confidence 33579999987644
No 109
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=35.11 E-value=63 Score=23.26 Aligned_cols=79 Identities=6% Similarity=-0.069 Sum_probs=47.1
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh---
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF--- 279 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~--- 279 (358)
+|.+.|..|.... .+ ...|...|..+....+..-+ ..+++...|.+++..+- .+ .-|.-.+..+.+.
T Consensus 3 ~iliv~~~~~~~~-~l-~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 3 HILLLEEEDEAAT-VV-CEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQAD 73 (119)
T ss_dssp EEEEECCCHHHHH-HH-HHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCC
T ss_pred EEEEEeCCHHHHH-HH-HHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhcccc
Confidence 5777777765432 23 55688889988877654332 33445678999887542 21 1233333444443
Q ss_pred cCCeEEEeccCc
Q 018280 280 HNILFYVAAPLT 291 (358)
Q Consensus 280 ~~iPvyV~a~~~ 291 (358)
.++|++++++..
T Consensus 74 ~~~~ii~~~~~~ 85 (119)
T 2j48_A 74 PHPPLVLFLGEP 85 (119)
T ss_dssp SSCCCEEEESSC
T ss_pred CCCCEEEEeCCC
Confidence 479999887643
No 110
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=34.94 E-value=2.1e+02 Score=24.26 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=25.5
Q ss_pred CCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
.+=|.||+ |...|..- -+..++-.||..|+|++.++.
T Consensus 113 ~~~Dvvi~----iS~SG~t~---~~~~~~~~ak~~g~~vi~iT~ 149 (201)
T 3trj_A 113 NEDDILLV----ITTSGDSE---NILSAVEEAHDLEMKVIALTG 149 (201)
T ss_dssp CTTCEEEE----ECSSSCCH---HHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEE----EeCCCCCH---HHHHHHHHHHHCCCcEEEEEC
Confidence 55676654 33466433 356677899999999998864
No 111
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.89 E-value=94 Score=23.49 Aligned_cols=82 Identities=11% Similarity=-0.090 Sum_probs=49.5
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHh-CCCC-eEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVH-DRIP-ATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~-~GI~-vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
...+|.+.|..|.... .+ ...|.+ .|+. +....+..-+ ..+++...|.||+..+- .+ .-|--.+..+-
T Consensus 7 ~~~~iLivdd~~~~~~-~l-~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~ 77 (143)
T 3cnb_A 7 NDFSILIIEDDKEFAD-ML-TQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIK 77 (143)
T ss_dssp --CEEEEECSCHHHHH-HH-HHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHH
T ss_pred CCceEEEEECCHHHHH-HH-HHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHH
Confidence 4568888888876532 23 556887 8999 7776665433 34556789999987643 22 12322233333
Q ss_pred H---hcCCeEEEeccCc
Q 018280 278 K---FHNILFYVAAPLT 291 (358)
Q Consensus 278 k---~~~iPvyV~a~~~ 291 (358)
+ ..++|+++++...
T Consensus 78 ~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 78 STPATANIIVIAMTGAL 94 (143)
T ss_dssp TSTTTTTSEEEEEESSC
T ss_pred hCccccCCcEEEEeCCC
Confidence 2 3579999987654
No 112
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=34.63 E-value=63 Score=29.94 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=42.9
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCCCCCcchHHHHHHHHhCCCCeEEEc---------chHHHHhhhcCCcCEEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~-v~EsrP~~qG~rlta~eL~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (358)
|.|+.+.-|..+++.|. ..+|. |.=.+|...+ + ..+.|||+..++ |..+...+++.++|.+++
T Consensus 104 g~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 177 (292)
T 3lou_A 104 KLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAP--L----AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVIL 177 (292)
T ss_dssp SCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHH--H----HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCcCHHHHHHHHHcCCCCcEEEEEEeCcHHHHH--H----HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Confidence 44677766666665564 23333 3334554422 2 347899999986 345566777789999988
Q ss_pred cce-eeec
Q 018280 254 GAD-RVAA 260 (358)
Q Consensus 254 GAd-~i~~ 260 (358)
..= +|++
T Consensus 178 a~y~~il~ 185 (292)
T 3lou_A 178 ARYMQVLS 185 (292)
T ss_dssp SSCCSCCC
T ss_pred cCchhhCC
Confidence 654 4543
No 113
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=34.55 E-value=1.7e+02 Score=26.42 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-------CCCCeEEE--cc-h
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-------DRIPATLI--AD-S 237 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~-------~GI~vtlI--~D-s 237 (358)
.+.+||..+-+|.+ | ..+++.+.++| .+|+++.-++...... ...+.. .++.+... .| .
T Consensus 24 ~~~~vlVtGatG~i-----G--~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 92 (351)
T 3ruf_A 24 SPKTWLITGVAGFI-----G--SNLLEKLLKLN--QVVIGLDNFSTGHQYN--LDEVKTLVSTEQWSRFCFIEGDIRDLT 92 (351)
T ss_dssp SCCEEEEETTTSHH-----H--HHHHHHHHHTT--CEEEEEECCSSCCHHH--HHHHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred CCCeEEEECCCcHH-----H--HHHHHHHHHCC--CEEEEEeCCCCCchhh--hhhhhhccccccCCceEEEEccCCCHH
Confidence 35677776655432 2 23456666666 4677766555432222 223443 34433221 12 3
Q ss_pred HHHHhhhcCCcCEEEEcceeeecCC--------ceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 238 AAAALMKDGRVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~i~~nG--------~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.+..++ .++|.||--|-....+. --.|-.||..+.-+|+.++++-+|...+
T Consensus 93 ~~~~~~--~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 93 TCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp HHHHHT--TTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHh--cCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 455667 67888876664211110 1467889999999999999865555444
No 114
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=34.41 E-value=81 Score=30.83 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=56.6
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC---CeeEEEEec--C---------------CCCC
Q 018280 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG---VLERAYCSE--T---------------RPFN 214 (358)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g---~~~~V~v~E--s---------------rP~~ 214 (358)
+.++++|+ +|++|...+.+ +....+++.+.+++ ++++++..- . +|++
T Consensus 10 eeAv~~Ik-----dG~tI~~ggf~--------g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~ 76 (436)
T 2oas_A 10 LEAVSLIR-----SGETLWTHSMG--------ATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFF 76 (436)
T ss_dssp HHHHTTCC-----TTCEEEECCBT--------TCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESS
T ss_pred HHHHhhCC-----CCCEEEECCcc--------CcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecC
Confidence 34556777 99999887654 33444555544432 678887621 1 1222
Q ss_pred cchHHHHHHHHhCC-CCeEEEcchHHHHhhhc--CCcCEEEEcceeeecCCceec
Q 018280 215 QGSRLTAFELVHDR-IPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTAN 266 (358)
Q Consensus 215 qG~rlta~eL~~~G-I~vtlI~Dsa~~~~m~~--~~vd~VivGAd~i~~nG~v~n 266 (358)
-|..+ + ++.+.| ++.+-+--+.+..++.. -++|..++.|...-.+|.+.=
T Consensus 77 ~~~~l-r-~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~ 129 (436)
T 2oas_A 77 GGVPT-R-PLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSL 129 (436)
T ss_dssp CCTTT-H-HHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEEC
T ss_pred CCHHH-H-HHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEE
Confidence 22223 3 444444 44444444555555543 468999999998888897643
No 115
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=34.05 E-value=1.7e+02 Score=22.91 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHhCCCC-eEE--Ec-chHHHHhh----hcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 224 LVHDRIP-ATL--IA-DSAAAALM----KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 224 L~~~GI~-vtl--I~-Dsa~~~~m----~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.+.|++ ++. .. .+..-.++ ++.++|++++|+..--. +---.|+-.-.+ .++-++||+|+
T Consensus 88 ~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~---~~~~~Gs~~~~v-l~~a~~PVlvV 155 (156)
T 3fg9_A 88 AEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFP---HSKIAGAIGPRL-ARKAPISVIVV 155 (156)
T ss_dssp HHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCT---TSSSCSCHHHHH-HHHCSSEEEEE
T ss_pred HHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCc---cceeecchHHHH-HHhCCCCEEEe
Confidence 5567884 543 22 22222333 34689999999975322 212467765544 56778999986
No 116
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=33.95 E-value=1.6e+02 Score=25.96 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=48.0
Q ss_pred HHHCCCeeEEEEecCCCCC-cchHHHHHHHHhCCCCeEEE--cchH---HHHhhhcCCcCEEEEcceeeecCCceec-cc
Q 018280 196 LHSEGVLERAYCSETRPFN-QGSRLTAFELVHDRIPATLI--ADSA---AAALMKDGRVSAVIVGADRVAANGDTAN-KI 268 (358)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~-qG~rlta~eL~~~GI~vtlI--~Dsa---~~~~m~~~~vd~VivGAd~i~~nG~v~n-ki 268 (358)
|...+..++|+-+...+.. +-.+-....|.+.|+++... ..+. +..+.++.++|++++|+..- |.+-. -.
T Consensus 194 a~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~---~~~~~~~~ 270 (294)
T 3loq_A 194 VKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGA---GSVMTMIL 270 (294)
T ss_dssp HHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCC---SCHHHHHH
T ss_pred hhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCC---CCccceee
Confidence 3344556665544333221 11111244678889986543 2222 22333456899999998752 22222 14
Q ss_pred ccHHHHHHHHhcCCeEEEec
Q 018280 269 GTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 269 GT~~lA~~Ak~~~iPvyV~a 288 (358)
|+..-.+ .++-.+||+|+=
T Consensus 271 Gs~~~~v-l~~~~~pvLvv~ 289 (294)
T 3loq_A 271 GSTSESV-IRRSPVPVFVCK 289 (294)
T ss_dssp HCHHHHH-HHHCSSCEEEEC
T ss_pred CcHHHHH-HhcCCCCEEEEC
Confidence 5544444 467789999973
No 117
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=33.94 E-value=91 Score=23.51 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=49.1
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHH-hhhcCC-cCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGR-VSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~-~m~~~~-vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
...+|.++|..|.... .....|.+.|+.+....+..-+. .+.+.. +|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNRE--ALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRM--QPE-----SGLDLIRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHH--HHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCC--SSS-----CHHHHHHHHHT
T ss_pred CCCeEEEECCCHHHHH--HHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccC--CCC-----CHHHHHHHHHh
Confidence 3568888888776532 23556888899998877765442 333344 8999887643 222 12222222322
Q ss_pred --hcCCeEEEeccCc
Q 018280 279 --FHNILFYVAAPLT 291 (358)
Q Consensus 279 --~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 77 ~~~~~~~ii~~s~~~ 91 (136)
T 3hdv_A 77 SERAALSIIVVSGDT 91 (136)
T ss_dssp STTTTCEEEEEESSC
T ss_pred cCCCCCCEEEEeCCC
Confidence 2568999987543
No 118
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=33.93 E-value=75 Score=26.77 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=47.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-c----hHHHHhhhcCCcCEEEEcceeeecCCc--e
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-D----SAAAALMKDGRVSAVIVGADRVAANGD--T 264 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-D----sa~~~~m~~~~vd~VivGAd~i~~nG~--v 264 (358)
+.+.+.++| .+|+++.-+|.... .+ ..+ ++++. | ..+..++ .++|.||--|-....+-. -
T Consensus 20 l~~~L~~~g--~~V~~~~r~~~~~~-~~------~~~--~~~~~~Dl~d~~~~~~~~--~~~d~vi~~a~~~~~~~~~~~ 86 (227)
T 3dhn_A 20 LLNEALNRG--FEVTAVVRHPEKIK-IE------NEH--LKVKKADVSSLDEVCEVC--KGADAVISAFNPGWNNPDIYD 86 (227)
T ss_dssp HHHHHHTTT--CEEEEECSCGGGCC-CC------CTT--EEEECCCTTCHHHHHHHH--TTCSEEEECCCC------CCS
T ss_pred HHHHHHHCC--CEEEEEEcCcccch-hc------cCc--eEEEEecCCCHHHHHHHh--cCCCEEEEeCcCCCCChhHHH
Confidence 556666666 57777755443211 11 022 22221 2 3455667 678988876633222211 1
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccC
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.|-.||..+.-+|+.++++-+|...+
T Consensus 87 ~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 87 ETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 37889999999999999865555443
No 119
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=33.47 E-value=2.2e+02 Score=24.05 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=50.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe--cCCCC-----CcchHHHHHHHHhCCCCeEEEcchHHH
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS--ETRPF-----NQGSRLTAFELVHDRIPATLIADSAAA 240 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~--EsrP~-----~qG~rlta~eL~~~GI~vtlI~Dsa~~ 240 (358)
+..+|+.|.+-+. -..| ..++..++++||++-|=++ +.+++ ..+..| +-...||+-- .....
T Consensus 40 ~a~~I~~y~~~~~----Evdt-~~li~~~~~~gk~v~lP~~~~~~~~m~f~~~~~~~~L---~~~~~gi~EP---~~~~~ 108 (187)
T 1ydm_A 40 NAGTIAVTISRGL----EIPT-RPVIEQAWEEGKQVCIPKCHPDTKKMQFRTYQTDDQL---ETVYAGLLEP---VIEKT 108 (187)
T ss_dssp TCSEEECCCCCTT----SCCC-HHHHHHHHHTTCEEEEECC---CCCCCEEECCCCTTH---HHHHTTSCCC---C--CC
T ss_pred hCCEEEEECCCCC----CCCH-HHHHHHHHHCCCEEEEeEEecCCCcEEEEEeCCCCcc---CcCCCCCCCC---CCccc
Confidence 4578988764321 1122 4577888888875444333 22221 112223 2346777432 11100
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccH
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTY 271 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~ 271 (358)
......++|+|||.+=++-.+|.=+-.=|.|
T Consensus 109 ~~~~~~~iDlvivP~vafD~~G~RLG~GgGy 139 (187)
T 1ydm_A 109 KEVNPSQIDLMIVPGVCFDVNGFRVGFGGGY 139 (187)
T ss_dssp CCCCGGGCCEEECCCSEEETTSCEECCSCCS
T ss_pred ccCCccCCCEEEeCCeEECCCCCcccCCccH
Confidence 0111257899999999999999666655554
No 120
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=33.42 E-value=1.3e+02 Score=26.89 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cc-hHHHHhhhcCC
Q 018280 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGR 247 (358)
Q Consensus 171 ~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m~~~~ 247 (358)
+||..+-+|.+ | ..+++.+.++|. +|+++--+|. +.... ..+|...|+.+... .| .++..++ ..
T Consensus 13 ~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~-~~~~~-~~~l~~~~v~~v~~Dl~d~~~l~~a~--~~ 79 (318)
T 2r6j_A 13 KILIFGGTGYI-----G--NHMVKGSLKLGH--PTYVFTRPNS-SKTTL-LDEFQSLGAIIVKGELDEHEKLVELM--KK 79 (318)
T ss_dssp CEEEETTTSTT-----H--HHHHHHHHHTTC--CEEEEECTTC-SCHHH-HHHHHHTTCEEEECCTTCHHHHHHHH--TT
T ss_pred eEEEECCCchH-----H--HHHHHHHHHCCC--cEEEEECCCC-chhhH-HHHhhcCCCEEEEecCCCHHHHHHHH--cC
Confidence 46665545433 2 234566666674 5555543332 11121 23466778765332 12 3455667 66
Q ss_pred cCEEEEcceeeecCCceecccccHHHHHHHHhcC-CeEEEe
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-iPvyV~ 287 (358)
+|.||.-|- ..+-.++..+.-+|+..| ++.+|.
T Consensus 80 ~d~vi~~a~-------~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 80 VDVVISALA-------FPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp CSEEEECCC-------GGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred CCEEEECCc-------hhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 777765442 233567888888999988 888874
No 121
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=33.38 E-value=1.1e+02 Score=23.42 Aligned_cols=81 Identities=7% Similarity=-0.074 Sum_probs=49.2
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH--
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-- 278 (358)
..+|.++|..|.... .....|.+.|..|....+..-+ ..+.+..+|.|++..+ +++. -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAE--MLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHP 74 (136)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSG
T ss_pred CCEEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCC
Confidence 457888887776532 2355688889988877665544 2345678999998643 3332 23333333322
Q ss_pred -hcCCeEEEeccCc
Q 018280 279 -FHNILFYVAAPLT 291 (358)
Q Consensus 279 -~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 75 ~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 75 LTKTLPILMLTAQG 88 (136)
T ss_dssp GGTTCCEEEEECTT
T ss_pred CcCCccEEEEecCC
Confidence 2379999987643
No 122
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=33.38 E-value=2.5e+02 Score=24.65 Aligned_cols=95 Identities=7% Similarity=-0.052 Sum_probs=54.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHH---HHHHHHhCCCCeEEEcc--h-HHHHh---hhcCCcCEEEEcceeeecCC
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRL---TAFELVHDRIPATLIAD--S-AAAAL---MKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rl---ta~eL~~~GI~vtlI~D--s-a~~~~---m~~~~vd~VivGAd~i~~nG 262 (358)
.+..|...+..++++-+.. | .+..+. ....+...|++++...- . ....+ .++.++|+|++|...- |
T Consensus 27 A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~---~ 101 (290)
T 3mt0_A 27 AQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPD---N 101 (290)
T ss_dssp HHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCS---C
T ss_pred HHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccC---C
Confidence 4455555566666554433 4 222221 23346678999876432 2 22222 2347899999998753 2
Q ss_pred ceecc-cccHHHHHHHHhcCCeEEEeccCcc
Q 018280 263 DTANK-IGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 263 ~v~nk-iGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
..-.. .|+..-. +.++.++||+|+-+...
T Consensus 102 ~~~~~~~gs~~~~-vl~~~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 102 PLKKAILTPDDWK-LLRFAPCPVLMTKTARP 131 (290)
T ss_dssp TTSTTSCCHHHHH-HHHHCSSCEEEECCCSC
T ss_pred chhhcccCHHHHH-HHhcCCCCEEEecCCCC
Confidence 22222 4665544 45778999999864443
No 123
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.37 E-value=25 Score=27.73 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=31.5
Q ss_pred hCCCCeEEE--cchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 226 HDRIPATLI--ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 226 ~~GI~vtlI--~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.|+++... +.+.+...+ .++|.|++|-..-+.-. .+--.|..+||||.|.
T Consensus 32 ~~gi~v~i~a~~~~~~~~~~--~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 32 LTEVRVIANSGAYGAHYDIM--GVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVAT 84 (108)
T ss_dssp HHTCSEEEEEEETTSCTTTG--GGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEEC
T ss_pred HCCCceEEEEcchHHHHhhc--cCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEe
Confidence 345666553 233333445 67999999976543321 1444567789999996
No 124
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=33.35 E-value=1e+02 Score=26.78 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=46.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecCCceecc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~nG~v~nk 267 (358)
+.+.+.++....+|+++..+|.. . .+|...++.+. ..| ..+..++ .++|.|+--|-.- .+ .|-
T Consensus 15 l~~~L~~~~~g~~V~~~~r~~~~-~-----~~~~~~~~~~~-~~D~~d~~~~~~~~--~~~d~vi~~a~~~-~~---~~~ 81 (286)
T 2zcu_A 15 VIESLMKTVPASQIVAIVRNPAK-A-----QALAAQGITVR-QADYGDEAALTSAL--QGVEKLLLISSSE-VG---QRA 81 (286)
T ss_dssp HHHHHTTTSCGGGEEEEESCTTT-C-----HHHHHTTCEEE-ECCTTCHHHHHHHT--TTCSEEEECC------------
T ss_pred HHHHHHhhCCCceEEEEEcChHh-h-----hhhhcCCCeEE-EcCCCCHHHHHHHH--hCCCEEEEeCCCC-ch---HHH
Confidence 44555554113556666544432 1 23445565433 223 4556667 6788888655321 11 466
Q ss_pred cccHHHHHHHHhcCCeEEEeccC
Q 018280 268 IGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 268 iGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.||..+.-+|+.++++-+|...+
T Consensus 82 ~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 82 PQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 78999888898888876665443
No 125
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=33.27 E-value=49 Score=33.36 Aligned_cols=179 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC--eeEEEEecCCCCCcchHHHHHHHHhC
Q 018280 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV--LERAYCSETRPFNQGSRLTAFELVHD 227 (358)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~--~~~V~v~EsrP~~qG~rlta~eL~~~ 227 (358)
.+.|+.+++++|. ||.++-+ |.|....+...+.+.+. .+.++. |.-... +..+.-....-.
T Consensus 288 ~~~Ia~~~A~~i~-----dG~~v~l----------GiGiP~av~~~l~~~~~~~~l~~~~-E~G~~g-~~~~~g~~~g~~ 350 (531)
T 2ahu_A 288 RKLVARRALFEMR-----KGAVGNV----------GVGIADGIGLVAREEGCADDFILTV-ETGPIG-GITSQGIAFGAN 350 (531)
T ss_dssp HHHHHHHHHTTCC-----TTCEEEE----------CSSTTTTHHHHHHHHTCGGGSEEBC-TTSEES-CBCC-----CCC
T ss_pred HHHHHHHHHHhcc-----CCCEEEe----------cCcHHHHHHHHHHhcCCCCCeEEEE-ccceec-CccCCCccceeE
Q ss_pred CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceeccc------ccHHHHHHHHhcCCeEEEeccCcc-ccCCCCCC
Q 018280 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI------GTYSLALCAKFHNILFYVAAPLTS-IDLTLSSG 300 (358)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nki------GT~~lA~~Ak~~~iPvyV~a~~~k-~~~~~~~~ 300 (358)
--+-.++..+....++..+.+|..|+||=-|-.+|.+.+-. |+-...=.++..+.-+++...+.| +......|
T Consensus 351 ~~~~~~~~~~~~f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~D~~~gA~~~i~~~~~t~~g~~~~~~~g 430 (531)
T 2ahu_A 351 VNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADG 430 (531)
T ss_dssp BSCSEECCHHHHHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHHHHTTCSEEEEECCSEESSCEEEECSS
T ss_pred ECHHHhcchhhhhheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcchhhhcCCCeEEEEeccccCCceeeecCC
Q ss_pred CccccccCCcccceeccCCCCccccCCCce-eecceeeecCCCCccEEEeCCCCccCC
Q 018280 301 QEIVIEERSAKELLCSRGGLGEQVAASGIS-VWNPAFDVTPANLITGIITEKVSVSLT 357 (358)
Q Consensus 301 ~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~-v~np~fDvtP~~lIt~iITE~Gi~~~t 357 (358)
.-....+.....+. +.++ +--+....++-.-++.||||+|++..+
T Consensus 431 ~l~i~~eg~~~kiV------------~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~l~ 476 (531)
T 2ahu_A 431 KLNIVQEGRVKKFI------------RELPEITFSGKIALERGLDVRYITERAVFTLK 476 (531)
T ss_dssp CEEEEECCSEESEE------------SCCSSCSBCHHHHHHTTCEEEEECSSEEEEEE
T ss_pred eEEEeccCCCceEC------------CCCccCCCCCcccccCCCcEEEECCCEEEEec
No 126
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.14 E-value=1e+02 Score=22.99 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=47.2
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh--
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (358)
.+|.++|..|.... .....|.+.|..+....+..-+ ..+++.+.|.|++... ++++ -|--.+..+-+.
T Consensus 3 ~~ILivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~-----~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 3 KKVLLVDDSAVLRK--IVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVM-----DGFTVLKKLQEKEE 73 (122)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSS-----CHHHHHHHHHTSTT
T ss_pred ceEEEEeCCHHHHH--HHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCC-----cHHHHHHHHHhccc
Confidence 36788887776532 2355688889988877665544 3345667899988643 3322 132222222221
Q ss_pred -cCCeEEEeccC
Q 018280 280 -HNILFYVAAPL 290 (358)
Q Consensus 280 -~~iPvyV~a~~ 290 (358)
.++|+++++..
T Consensus 74 ~~~~pii~~s~~ 85 (122)
T 3gl9_A 74 WKRIPVIVLTAK 85 (122)
T ss_dssp TTTSCEEEEESC
T ss_pred ccCCCEEEEecC
Confidence 46999998653
No 127
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=33.09 E-value=1.7e+02 Score=25.83 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCC-CeeEEEEecCCCCCcc-hHHHHHHHHhCCCCeEEEc-----chH-------------HHHhh-hcCC
Q 018280 189 ALGVIRALHSEG-VLERAYCSETRPFNQG-SRLTAFELVHDRIPATLIA-----DSA-------------AAALM-KDGR 247 (358)
Q Consensus 189 a~~~l~~a~~~g-~~~~V~v~EsrP~~qG-~rlta~eL~~~GI~vtlI~-----Dsa-------------~~~~m-~~~~ 247 (358)
+..+...++..| +++-|.- |+..- .++....|.+.||+|.... |.. +..++ ..+.
T Consensus 105 ~~A~~~al~~~g~~rvgllt----py~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALAT----AYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPD 180 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEE----SSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCCEEEEEe----CChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCC
Confidence 344445555555 3444432 34322 2233456888999876543 211 11113 4567
Q ss_pred cCEEEEcceeeecCCceecccccHH-HHHHHHhcCCeEEE
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYS-LALCAKFHNILFYV 286 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~-lA~~Ak~~~iPvyV 286 (358)
+|.|++||--+ .++. +.-+-+..|+||+=
T Consensus 181 adaivL~CT~l----------~~l~~i~~le~~lg~PVid 210 (240)
T 3ixl_A 181 SDGILLSSGGL----------LTLDAIPEVERRLGVPVVS 210 (240)
T ss_dssp CSEEEEECTTS----------CCTTHHHHHHHHHSSCEEE
T ss_pred CCEEEEeCCCC----------chhhhHHHHHHHhCCCEEe
Confidence 88888876332 3333 34456677888864
No 128
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=32.70 E-value=52 Score=32.83 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=44.4
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH--------------------HhhhcCCcCEEEEcceeeecCC
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA--------------------ALMKDGRVSAVIVGADRVAANG 262 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~--------------------~~m~~~~vd~VivGAd~i~~nG 262 (358)
-+|+++-.- .-|..+ |++|.+.|+++++|-.+.-. .=+ .++|.|++..+.
T Consensus 349 ~~viIiG~G--~~G~~l-a~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi--~~ad~vi~~~~~----- 418 (565)
T 4gx0_A 349 ELIFIIGHG--RIGCAA-AAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGI--DRASGIIVTTND----- 418 (565)
T ss_dssp CCEEEECCS--HHHHHH-HHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTT--TSCSEEEECCSC-----
T ss_pred CCEEEECCC--HHHHHH-HHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCc--cccCEEEEECCC-----
Confidence 456666442 236665 78999999999998743211 112 456666555432
Q ss_pred ceecccccHHHHHHHHhcCCeEEEec
Q 018280 263 DTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+ -=+..+++.||+.|.+..+++
T Consensus 419 d----~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 419 D----STNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp H----HHHHHHHHHHHHHCSSSEEEE
T ss_pred c----hHHHHHHHHHHHHCCCCEEEE
Confidence 2 334677899999998755443
No 129
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.67 E-value=1.3e+02 Score=22.38 Aligned_cols=80 Identities=13% Similarity=0.000 Sum_probs=47.4
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (358)
..+|.++|..|.... .+ ...|. .|..+....+..-+ ..+++.++|.||+..+- .+ .-|.-.+..+-+.
T Consensus 4 ~~~ilivdd~~~~~~-~l-~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRE-TL-RLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DG-----MDGYALCGHFRSEP 73 (133)
T ss_dssp -CEEEEECSCHHHHH-HH-HHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SS-----SCHHHHHHHHHHST
T ss_pred CCEEEEEcCCHHHHH-HH-HHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHhCC
Confidence 457888887776532 22 33454 88888877765444 34556789999987643 22 1233333333332
Q ss_pred --cCCeEEEeccCc
Q 018280 280 --HNILFYVAAPLT 291 (358)
Q Consensus 280 --~~iPvyV~a~~~ 291 (358)
.++|+++++...
T Consensus 74 ~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 74 TLKHIPVIFVSGYA 87 (133)
T ss_dssp TTTTCCEEEEESCC
T ss_pred ccCCCCEEEEeCCC
Confidence 379999987643
No 130
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=32.59 E-value=62 Score=28.60 Aligned_cols=87 Identities=8% Similarity=-0.053 Sum_probs=47.3
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH---HHHhhhcCCcCEEEEcceeeecCCce-eccc-ccHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDT-ANKI-GTYSLA 274 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa---~~~~m~~~~vd~VivGAd~i~~nG~v-~nki-GT~~lA 274 (358)
....+|.+.+-.|...-..+ ...|.+.|+++.++.-.. ....+ .++|.+|+.--.....+.. .... +...+.
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i-~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i 86 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMM-EDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLI 86 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHH-HHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHH-HHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHHH
Confidence 45678888888888654344 567899999998765322 12223 4677776542111111110 0001 122222
Q ss_pred HHHHhcCCeEEEecc
Q 018280 275 LCAKFHNILFYVAAP 289 (358)
Q Consensus 275 ~~Ak~~~iPvyV~a~ 289 (358)
--|...++|++-+|=
T Consensus 87 ~~~~~~~~PiLGIC~ 101 (239)
T 1o1y_A 87 EEILKKEIPFLGICL 101 (239)
T ss_dssp HHHHHHTCCEEEETH
T ss_pred HHHHHCCCCEEEEch
Confidence 234457899997663
No 131
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=32.33 E-value=2.5e+02 Score=24.31 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=24.8
Q ss_pred HHHHHhCCCCeEEEcchHHH-----------HhhhcCCcCEEEE
Q 018280 221 AFELVHDRIPATLIADSAAA-----------ALMKDGRVSAVIV 253 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~-----------~~m~~~~vd~Viv 253 (358)
++.+++.|+++..|+++.-. .+- +.+|.+|.
T Consensus 128 ~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La--~~aD~~l~ 169 (243)
T 3cvj_A 128 AIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLY--EYADVVLD 169 (243)
T ss_dssp HHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGG--GGCSEEEE
T ss_pred HHHHHHCCCEEEEEeCCcccccccccCCCcCcHH--HhCCEEEE
Confidence 56678899999999998766 555 67888875
No 132
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=32.29 E-value=87 Score=25.35 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHhCCCC-eEEEc--chH---HHHhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIP-ATLIA--DSA---AAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~-vtlI~--Dsa---~~~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|++ +.... .+. +-.+.++.++|+|++|+..- |.+-. -.|+-.--+ .++-.+||+|+
T Consensus 89 ~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~v-l~~a~~PVlvV 156 (163)
T 1tq8_A 89 RAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANV-SRRAKVDVLIV 156 (163)
T ss_dssp HHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHH-HHHTTCEEEEE
T ss_pred HHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHH-HHhCCCCEEEE
Confidence 35567888 65332 222 22233457999999998743 22222 256655444 45567999998
No 133
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=32.24 E-value=89 Score=29.18 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=43.3
Q ss_pred HCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch---------HHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 198 SEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---------AAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 198 ~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds---------a~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
+.|...+|++. .|.+.+... -+...|.++..++-. .+-..+++.+..+|++. + .-|..
T Consensus 129 ~~gd~~~Vl~~--~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~------~--p~npt 195 (437)
T 3g0t_A 129 HKNREYGTLFI--DPGFNLNKL---QCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYS------N--PNNPT 195 (437)
T ss_dssp CTTCSCCEEEE--ESCCHHHHH---HHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEE------S--SCTTT
T ss_pred CCCCccEEEEe--CCCcHhHHH---HHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEe------C--CCCCC
Confidence 44432256655 466666432 244568877777521 22233434667777652 1 12555
Q ss_pred ccH-------HHHHHHHhcCCeEEEe
Q 018280 269 GTY-------SLALCAKFHNILFYVA 287 (358)
Q Consensus 269 GT~-------~lA~~Ak~~~iPvyV~ 287 (358)
|+. .++-+|++||+++++=
T Consensus 196 G~~~~~~~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 196 WQCMTDEELRIIGELATKHDVIVIED 221 (437)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcCCHHHHHHHHHHHHHCCcEEEEE
Confidence 543 3567899999998873
No 134
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=31.47 E-value=59 Score=29.13 Aligned_cols=84 Identities=19% Similarity=0.096 Sum_probs=47.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeeecC----Cce
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAAN----GDT 264 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~~n----G~v 264 (358)
+++.+.++|. +|+++.-+|... . |. ++.+. ..| ..+..++ .++|.||--|-....+ ---
T Consensus 18 l~~~L~~~g~--~V~~~~r~~~~~------~-~~--~~~~~-~~Dl~~~~~~~~~--~~~d~Vih~a~~~~~~~~~~~~~ 83 (311)
T 3m2p_A 18 VVESIKNDGN--TPIILTRSIGNK------A-IN--DYEYR-VSDYTLEDLINQL--NDVDAVVHLAATRGSQGKISEFH 83 (311)
T ss_dssp HHHHHHHTTC--EEEEEESCCC--------------CCEEE-ECCCCHHHHHHHT--TTCSEEEECCCCCCSSSCGGGTH
T ss_pred HHHHHHhCCC--EEEEEeCCCCcc------c-CC--ceEEE-EccccHHHHHHhh--cCCCEEEEccccCCCCChHHHHH
Confidence 4566666664 666665442211 1 22 44332 222 3455567 6888888765432211 112
Q ss_pred ecccccHHHHHHHHhcCCeEEEecc
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
.|-.||..+.-+|+..+++-+|...
T Consensus 84 ~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 84 DNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 5778999999999999998444433
No 135
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=31.33 E-value=3e+02 Score=25.01 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=47.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch--------HHHHhhhcCCcCEEEEcceeeecCCc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--------AAAALMKDGRVSAVIVGADRVAANGD 263 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds--------a~~~~m~~~~vd~VivGAd~i~~nG~ 263 (358)
+++.+.+.| -+|++.+ |.+.|..+ ...+...|+++..++-. .+-..+.+.+..+|++-. -=...|.
T Consensus 78 ~~~~l~~~g--d~Vl~~~--~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~-~~nptG~ 151 (416)
T 3isl_A 78 VLASVIEPE--DDVLIPI--YGRFGYLL-TEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH-GETSTGR 151 (416)
T ss_dssp HHHHHCCTT--CEEEEEE--SSHHHHHH-HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES-EETTTTE
T ss_pred HHHHhcCCC--CEEEEec--CCcccHHH-HHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc-cCCCCce
Confidence 344443333 3566654 44444222 33466779888877622 233344323555554442 2223454
Q ss_pred eecccccHHHHHHHHhcCCeEEEe
Q 018280 264 TANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.. --.++-+|++||+++++=
T Consensus 152 ~~~---l~~i~~l~~~~~~~li~D 172 (416)
T 3isl_A 152 IHP---LKAIGEACRTEDALFIVD 172 (416)
T ss_dssp ECC---CHHHHHHHHHTTCEEEEE
T ss_pred ecC---HHHHHHHHHHcCCEEEEE
Confidence 433 356888999999998873
No 136
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=31.31 E-value=4.1e+02 Score=26.50 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=71.9
Q ss_pred HHHHH--hHhhhcCCCcEEEEecCCCccccccccc-HH-HHHHHHHHCC-CeeEEEEecCCCCC----------------
Q 018280 156 YGASF--LQNQLKNSKFSVLTHCNTGSLATAGYGT-AL-GVIRALHSEG-VLERAYCSETRPFN---------------- 214 (358)
Q Consensus 156 ~~~~~--i~~~~~~~~~~ILT~~~sg~lat~g~~t-a~-~~l~~a~~~g-~~~~V~v~EsrP~~---------------- 214 (358)
.++++ |+ ||++|..++++| ... +. .++..+.+++ ++++++..-..+..
T Consensus 54 EAv~~~~Ik-----dG~tV~~gGf~g------~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~ 122 (519)
T 2hj0_A 54 EAIEKTRLK-----DGMTISFHHHFR------EGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNIT 122 (519)
T ss_dssp HHHHHTTCC-----TTCEEEECCTTG------GGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEE
T ss_pred HHHhcCCCC-----CCCEEEECCccC------CchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEE
Confidence 34556 77 899999987652 333 22 4455555534 46777765222211
Q ss_pred ---cchHHHHHHHHhCC---CCeEEEcchHHHHhhhc--CCcCEEEEcceeeecCCcee---ccc--ccHHHHHHHHhcC
Q 018280 215 ---QGSRLTAFELVHDR---IPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTA---NKI--GTYSLALCAKFHN 281 (358)
Q Consensus 215 ---qG~rlta~eL~~~G---I~vtlI~Dsa~~~~m~~--~~vd~VivGAd~i~~nG~v~---nki--GT~~lA~~Ak~~~ 281 (358)
-|.. -+++.+.| +|+.|-.-....+++.. -++|..++.|...-.+|.+. .+. |+...+.++....
T Consensus 123 ~~~~g~~--~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A 200 (519)
T 2hj0_A 123 SSGLRDK--VGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYA 200 (519)
T ss_dssp ESBCHHH--HHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHC
T ss_pred ecCCCcH--HHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhC
Confidence 1111 13455555 46655433336667742 47999999999999999876 333 5667777777777
Q ss_pred CeEEEec
Q 018280 282 ILFYVAA 288 (358)
Q Consensus 282 iPvyV~a 288 (358)
.-|++-.
T Consensus 201 ~~VIaEV 207 (519)
T 2hj0_A 201 DQVVIVT 207 (519)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 7666543
No 137
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=31.28 E-value=85 Score=28.23 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=55.0
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc----hHHHHhhhc
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----SAAAALMKD 245 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----sa~~~~m~~ 245 (358)
++||..+-+|.+ | ..+.+.+.++| .+|+++.-+|.. .. +|.+.++.+. ..| ..+..++
T Consensus 14 M~ilVtGatG~i-----G--~~l~~~L~~~g--~~V~~~~r~~~~-~~-----~l~~~~~~~~-~~Dl~d~~~~~~~~-- 75 (342)
T 2x4g_A 14 VKYAVLGATGLL-----G--HHAARAIRAAG--HDLVLIHRPSSQ-IQ-----RLAYLEPECR-VAEMLDHAGLERAL-- 75 (342)
T ss_dssp CEEEEESTTSHH-----H--HHHHHHHHHTT--CEEEEEECTTSC-GG-----GGGGGCCEEE-ECCTTCHHHHHHHT--
T ss_pred CEEEEECCCcHH-----H--HHHHHHHHHCC--CEEEEEecChHh-hh-----hhccCCeEEE-EecCCCHHHHHHHH--
Confidence 467666545432 2 23456666666 466666544432 11 2333355432 223 3455667
Q ss_pred CCcCEEEEcceeeecC-Cc-----eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 246 GRVSAVIVGADRVAAN-GD-----TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 246 ~~vd~VivGAd~i~~n-G~-----v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.++|.||--|-..... .+ -+|-.||..+.-+|+.++++-+|...+
T Consensus 76 ~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 76 RGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp TTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred cCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 6789888766432110 11 156789999999999999755554443
No 138
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=31.27 E-value=1.4e+02 Score=27.03 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=39.6
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc-----------hHHHHhhhcCCcCEEEEcceeeecCCceecccccHH
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-----------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYS 272 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D-----------sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~ 272 (358)
+|++. .|.+.+.. .-+...|.++..++- ..+-..+++.+...|++- .--.+.|.+.++----.
T Consensus 111 ~vl~~--~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~-~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 111 QILVQ--EPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC-NPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp EEEEC--SSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE-SSBTTTTBCCCHHHHHH
T ss_pred eEEEC--CCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE-CCCCCCCcccCHHHHHH
Confidence 45543 35665542 234556766655432 233344533456665442 11122333333222334
Q ss_pred HHHHHHhcCCeEEEe
Q 018280 273 LALCAKFHNILFYVA 287 (358)
Q Consensus 273 lA~~Ak~~~iPvyV~ 287 (358)
++-+|++||+++++=
T Consensus 185 i~~~~~~~~~~li~D 199 (391)
T 3dzz_A 185 IAELCAKHQVLLISD 199 (391)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEe
Confidence 566799999998873
No 139
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=31.08 E-value=1.5e+02 Score=21.89 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=45.6
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-hc
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-~~ 280 (358)
.+|.+.|..|.... .+ ...|...|..+....+..-+ ..+++.+.|.|++..+ +++. -|.-.+..+.+ ..
T Consensus 4 ~~ilivdd~~~~~~-~l-~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 74 (126)
T 1dbw_A 4 YTVHIVDDEEPVRK-SL-AFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDM-----SGVELLRNLGDLKI 74 (126)
T ss_dssp CEEEEEESSHHHHH-HH-HHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEcCCHHHHH-HH-HHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCC-----CHHHHHHHHHhcCC
Confidence 46777777665432 23 45577789888766654333 3445567898888643 2322 23333333333 24
Q ss_pred CCeEEEeccC
Q 018280 281 NILFYVAAPL 290 (358)
Q Consensus 281 ~iPvyV~a~~ 290 (358)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (126)
T 1dbw_A 75 NIPSIVITGH 84 (126)
T ss_dssp CCCEEEEECT
T ss_pred CCCEEEEECC
Confidence 7999998654
No 140
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=31.06 E-value=92 Score=23.02 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=47.1
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh--
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (358)
.+|.+.|..|.... .+ ...|.+.|+.+....+..-+ ..+.+...|.|++..+ ++++ -|--.+..+-+.
T Consensus 3 ~~ilivdd~~~~~~-~l-~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 73 (127)
T 2jba_A 3 RRILVVEDEAPIRE-MV-CFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGG-----SGIQFIKHLRRESM 73 (127)
T ss_dssp CEEEEECSCHHHHH-HH-HHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTE-----EHHHHHHHHHTSTT
T ss_pred cEEEEEcCCHHHHH-HH-HHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhCcc
Confidence 36778887775422 23 45678889988876664433 3344567899988643 3322 233233333332
Q ss_pred -cCCeEEEeccCc
Q 018280 280 -HNILFYVAAPLT 291 (358)
Q Consensus 280 -~~iPvyV~a~~~ 291 (358)
.++|+++++...
T Consensus 74 ~~~~~ii~~s~~~ 86 (127)
T 2jba_A 74 TRDIPVVMLTARG 86 (127)
T ss_dssp TTTSCEEEEEETT
T ss_pred cCCCCEEEEeCCC
Confidence 479999986543
No 141
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=30.91 E-value=1.4e+02 Score=26.03 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=38.5
Q ss_pred ccH-HHHHHHHHHCCCeeEE--EEecCCCCCcchHHHHHHHHhCCCCeEEEcc----------hHHHHhhhcCCcCEEEE
Q 018280 187 GTA-LGVIRALHSEGVLERA--YCSETRPFNQGSRLTAFELVHDRIPATLIAD----------SAAAALMKDGRVSAVIV 253 (358)
Q Consensus 187 ~ta-~~~l~~a~~~g~~~~V--~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----------sa~~~~m~~~~vd~Viv 253 (358)
++. ..+|....+......| +++ .+|...+. ....+.|||+..+.. ..+-..++..++|.+++
T Consensus 14 g~~~~~~l~~l~~~~l~~~I~~Vit-~~~~~~v~----~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~ 88 (212)
T 3av3_A 14 GTNFQAIVDAAKRGDLPARVALLVC-DRPGAKVI----ERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIAL 88 (212)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEE-SSTTCHHH----HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEe-CCCCcHHH----HHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEE
Confidence 444 4455555443213343 333 23444332 234678999987652 35556677789999988
Q ss_pred cce-eee
Q 018280 254 GAD-RVA 259 (358)
Q Consensus 254 GAd-~i~ 259 (358)
.+= +|+
T Consensus 89 a~y~~il 95 (212)
T 3av3_A 89 AGYMRLI 95 (212)
T ss_dssp SSCCSCC
T ss_pred chhhhhC
Confidence 763 444
No 142
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=30.87 E-value=1.3e+02 Score=26.68 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=39.7
Q ss_pred ccH-HHHHHHHHHCCCeeEE--EEecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEEE
Q 018280 187 GTA-LGVIRALHSEGVLERA--YCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 187 ~ta-~~~l~~a~~~g~~~~V--~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (358)
++. ..+|....+.....+| +++ .+|...+.+ ...+.|||+..+. |..+-..++..++|.+++
T Consensus 33 g~~~~~~l~~l~~~~~~~~I~~Vvt-~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 107 (229)
T 3auf_A 33 GTNLQAILDGCREGRIPGRVAVVIS-DRADAYGLE----RARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCL 107 (229)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEEEEE-SSTTCHHHH----HHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEc-CCCchHHHH----HHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEE
Confidence 444 4455555443223333 333 345554432 3467899998765 245556677789999988
Q ss_pred cce-eeec
Q 018280 254 GAD-RVAA 260 (358)
Q Consensus 254 GAd-~i~~ 260 (358)
.+= +|++
T Consensus 108 agy~~IL~ 115 (229)
T 3auf_A 108 AGYMRLVR 115 (229)
T ss_dssp SSCCSCCC
T ss_pred cChhHhCC
Confidence 654 5543
No 143
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=30.66 E-value=73 Score=24.14 Aligned_cols=82 Identities=11% Similarity=-0.049 Sum_probs=50.1
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (358)
..++|.++|..|.... .+ ...|.+.|..+....+..-+ ..+++...|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~ilivdd~~~~~~-~l-~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~ 76 (137)
T 3hdg_A 6 VALKILIVEDDTDARE-WL-STIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKL-----GGLEMLDRIKAG 76 (137)
T ss_dssp -CCCEEEECSCHHHHH-HH-HHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSS-----CHHHHHHHHHHT
T ss_pred cccEEEEEeCCHHHHH-HH-HHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCC-----CHHHHHHHHHhc
Confidence 3578888888776532 23 55688888888877765444 34556789999987652 221 23233333322
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 77 ~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 77 GAKPYVIVISAFS 89 (137)
T ss_dssp TCCCEEEECCCCC
T ss_pred CCCCcEEEEecCc
Confidence 3478999886644
No 144
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=30.64 E-value=63 Score=24.87 Aligned_cols=59 Identities=7% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHhCCCCeEEEc--c---hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 223 ELVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 223 eL~~~GI~vtlI~--D---sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.+.|++++... . ..+.... .++|++++|+..- |.+-...|+..-.+ .++-++||+|+
T Consensus 74 ~~~~~g~~~~~~v~~g~~~~~I~~~a--~~~dliV~G~~~~---~~~~~~~Gs~~~~v-l~~~~~pVlvv 137 (138)
T 3idf_A 74 FFTEKGINPFVVIKEGEPVEMVLEEA--KDYNLLIIGSSEN---SFLNKIFASHQDDF-IQKAPIPVLIV 137 (138)
T ss_dssp HHHTTTCCCEEEEEESCHHHHHHHHH--TTCSEEEEECCTT---STTSSCCCCTTCHH-HHHCSSCEEEE
T ss_pred HHHHCCCCeEEEEecCChHHHHHHHH--hcCCEEEEeCCCc---chHHHHhCcHHHHH-HhcCCCCEEEe
Confidence 3556788765432 1 1222333 3999999998742 22322236544444 45667999986
No 145
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=30.59 E-value=37 Score=32.84 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=39.6
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEcchHHHHhhhcCC
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.+.||..+.. +.-..+...+++.+.--+||+. |.+-|. + .+.+ ..+++....-..+..+.++.+
T Consensus 3 ~mkvlviG~g--------gre~ala~~l~~s~~v~~v~~~---pgn~g~---~-~~~~~~~~~~~~~d~~~l~~~a~~~~ 67 (431)
T 3mjf_A 3 AMNILIIGNG--------GREHALGWKAAQSPLADKIYVA---PGNAGT---A-LEPTLENVDIAATDIAGLLAFAQSHD 67 (431)
T ss_dssp CEEEEEEECS--------HHHHHHHHHHTTCTTEEEEEEE---ECCHHH---H-HCTTCEECCCCTTCHHHHHHHHHHTT
T ss_pred CcEEEEECCC--------HHHHHHHHHHHhCCCCCEEEEE---CCCHHH---h-hhcccceecCCcCCHHHHHHHHHHhC
Confidence 4678888643 2333344555555656788887 555553 2 1222 112221111233444556678
Q ss_pred cCEEEEccee
Q 018280 248 VSAVIVGADR 257 (358)
Q Consensus 248 vd~VivGAd~ 257 (358)
+|.|++|.+.
T Consensus 68 id~vv~g~e~ 77 (431)
T 3mjf_A 68 IGLTIVGPEA 77 (431)
T ss_dssp EEEEEECSHH
T ss_pred cCEEEECCch
Confidence 9999988654
No 146
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=30.52 E-value=70 Score=28.46 Aligned_cols=18 Identities=17% Similarity=-0.219 Sum_probs=13.7
Q ss_pred cccccHHHHHHHHhcCCe
Q 018280 266 NKIGTYSLALCAKFHNIL 283 (358)
Q Consensus 266 nkiGT~~lA~~Ak~~~iP 283 (358)
|--||..++-+++..+++
T Consensus 82 ~v~~t~~l~~~~~~~~~~ 99 (298)
T 4b4o_A 82 RLETTQLLAKAITKAPQP 99 (298)
T ss_dssp HHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 566888888888877655
No 147
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=30.42 E-value=1.3e+02 Score=22.87 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=48.9
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCC--eEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIP--ATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~--vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
+..+|.++|..|...- .....|.+.|.. +....+..-+ ..+++.++|.||+..+- .++ -|--.+..+-
T Consensus 4 ~~~~ILivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~lr 74 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIA--LIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PIA-----NGFEVMSAVR 74 (144)
T ss_dssp -CEEEEEECCCHHHHH--HHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GGG-----CHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHH--HHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CCC-----CHHHHHHHHH
Confidence 3568888888776532 235568888988 5555554333 34556789999987642 221 2333333333
Q ss_pred H---hcCCeEEEeccCc
Q 018280 278 K---FHNILFYVAAPLT 291 (358)
Q Consensus 278 k---~~~iPvyV~a~~~ 291 (358)
+ ..++|+++++...
T Consensus 75 ~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 75 KPGANQHTPIVILTDNV 91 (144)
T ss_dssp SSSTTTTCCEEEEETTC
T ss_pred hcccccCCCEEEEeCCC
Confidence 2 3579999987643
No 148
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=30.26 E-value=48 Score=30.12 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcc-hHHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeec-----C
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAA-----N 261 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG-~rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~-----n 261 (358)
+.+.+.++|...+|+++.-++.... ..+ .++...++.+. ..| ..+..++ ..+|.||--|-.... +
T Consensus 20 l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~-~~Dl~d~~~~~~~~--~~~d~vih~A~~~~~~~~~~~ 94 (348)
T 1oc2_A 20 FVHYVYNNHPDVHVTVLDKLTYAGNKANL--EAILGDRVELV-VGDIADAELVDKLA--AKADAIVHYAAESHNDNSLND 94 (348)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTTCCGGGT--GGGCSSSEEEE-ECCTTCHHHHHHHH--TTCSEEEECCSCCCHHHHHHC
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCChhHH--hhhccCCeEEE-ECCCCCHHHHHHHh--hcCCEEEECCcccCccchhhC
Confidence 4455555543457777754432211 111 12322233222 223 3455667 678888876643211 0
Q ss_pred C---ceecccccHHHHHHHHhcCCeEEEecc
Q 018280 262 G---DTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 262 G---~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
- --.|-.||..+.-+|+.+++.|+.+..
T Consensus 95 ~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS 125 (348)
T 1oc2_A 95 PSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125 (348)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 0 125788999999999998886665543
No 149
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=30.24 E-value=1e+02 Score=22.46 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=45.0
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCC
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~i 282 (358)
+|.+.|..|.... .+ ...|.+.|..+....+..-+ ..+.+.+.|.|++..+ +++. -|--.+..+.+...+
T Consensus 3 ~ilivdd~~~~~~-~l-~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 3 NVLIVEDEQAIRR-FL-RTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp EEEEECSCHHHHH-HH-HHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred EEEEEeCCHHHHH-HH-HHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 5777777765432 22 45577788887766654433 2333457899988653 2321 132233333345578
Q ss_pred eEEEeccC
Q 018280 283 LFYVAAPL 290 (358)
Q Consensus 283 PvyV~a~~ 290 (358)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 1zh2_A 74 PVIVLSAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred cEEEEECC
Confidence 99887653
No 150
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=30.14 E-value=71 Score=28.32 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=51.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.|..||..+- | .++..-++.+.+.|-...|+..+ +. ..+ .+|.+.| .++++...--...+ ..
T Consensus 30 ~gk~VLVVGg-G-------~va~~ka~~Ll~~GA~VtVvap~--~~---~~l--~~l~~~~-~i~~i~~~~~~~dL--~~ 91 (223)
T 3dfz_A 30 KGRSVLVVGG-G-------TIATRRIKGFLQEGAAITVVAPT--VS---AEI--NEWEAKG-QLRVKRKKVGEEDL--LN 91 (223)
T ss_dssp TTCCEEEECC-S-------HHHHHHHHHHGGGCCCEEEECSS--CC---HHH--HHHHHTT-SCEEECSCCCGGGS--SS
T ss_pred CCCEEEEECC-C-------HHHHHHHHHHHHCCCEEEEECCC--CC---HHH--HHHHHcC-CcEEEECCCCHhHh--CC
Confidence 4566777652 2 24556667777778766666433 21 122 3455554 34555433323345 67
Q ss_pred cCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+|+||...|. .-+| ..++..|+ .||||-|+
T Consensus 92 adLVIaAT~d-----~~~N----~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 92 VFFIVVATND-----QAVN----KFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp CSEEEECCCC-----THHH----HHHHHHSC-TTCEEEC-
T ss_pred CCEEEECCCC-----HHHH----HHHHHHHh-CCCEEEEe
Confidence 8887754322 2233 34677788 99998876
No 151
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.08 E-value=50 Score=25.17 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=27.3
Q ss_pred hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 242 ~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.++++++.+||+..|+ -.| +...+-..|++++||+|..
T Consensus 26 ai~~gka~lViiA~D~-~~~-------~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 26 LAKTGGAKLIIVAKNA-PKE-------IKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHTCCSEEEEECCC-CHH-------HHHHHHHHHHHTTCCEEEE
T ss_pred HHHcCCccEEEEeCCC-CHH-------HHHHHHHHHHHcCCCEEEe
Confidence 3456899999999882 222 3445566789999999886
No 152
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=29.93 E-value=61 Score=24.60 Aligned_cols=84 Identities=14% Similarity=0.001 Sum_probs=49.2
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEE-EcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtl-I~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
....+|.++|..|.... .+ ...|.+.|+.+.. ..+..-+ ..+++...|.||+..+- .+| .-|--.+..+-
T Consensus 7 ~~~~~iLivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~----~~g~~~~~~l~ 78 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAA-TL-RIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGA----LDGVETAARLA 78 (140)
T ss_dssp -CCCEEEEECCBHHHHH-HH-HHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSS----SCHHHHHHHHH
T ss_pred CCCceEEEEECCHHHHH-HH-HHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCC----CCHHHHHHHHH
Confidence 34578888888776532 23 4567788998884 5543322 33445679999987543 111 12322333333
Q ss_pred HhcCCeEEEeccCc
Q 018280 278 KFHNILFYVAAPLT 291 (358)
Q Consensus 278 k~~~iPvyV~a~~~ 291 (358)
+..++|+++++...
T Consensus 79 ~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 79 AGCNLPIIFITSSQ 92 (140)
T ss_dssp HHSCCCEEEEECCC
T ss_pred hCCCCCEEEEecCC
Confidence 33789999987643
No 153
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=29.92 E-value=84 Score=29.29 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH----------------------HHHhhhcC
Q 018280 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA----------------------AAALMKDG 246 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa----------------------~~~~m~~~ 246 (358)
++.+.+.+.++|.....+.+ .+ |.+ +..+.+.|+++..|+-.. +..++++.
T Consensus 19 alala~~L~~~g~~V~~vg~-~~----g~e--~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (365)
T 3s2u_A 19 ALACAREFQARGYAVHWLGT-PR----GIE--NDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQL 91 (365)
T ss_dssp HHHHHHHHHHTTCEEEEEEC-SS----STH--HHHTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEC-Cc----hHh--hchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777777765443332 22 221 223456788888776321 11234455
Q ss_pred CcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.|.|+ ..|+.+ +.+..++|+..+||+++-
T Consensus 92 ~PDvVi-------~~g~~~----s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 92 RPVCVL-------GLGGYV----TGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp CCSEEE-------ECSSST----HHHHHHHHHHTTCCEEEE
T ss_pred CCCEEE-------EcCCcc----hHHHHHHHHHcCCCEEEE
Confidence 667664 344332 456678899999999973
No 154
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=29.80 E-value=66 Score=35.19 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHhCCCCeEEEcch-----HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 220 TAFELVHDRIPATLIADS-----AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 220 ta~eL~~~GI~vtlI~Ds-----a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
|++-|.+.||+|+.+.+- .+.-+|+++++|+||--. +|.- ...-.|.+=-.|=.++||++--
T Consensus 977 Ta~~l~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~-----~~~~-~~~~~~~~r~~a~~~~~~~~t~ 1043 (1073)
T 1a9x_A 977 TAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTT-----SGRR-AIEDSRVIRRSALQYKVHYDTT 1043 (1073)
T ss_dssp HHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECC-----CSHH-HHHHTHHHHHHHHHTTCEEESS
T ss_pred hHHHHHhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECC-----CCcc-cccchHHHHHHHHHhCCCEEcc
Confidence 567788899999998642 355667889999998543 2211 1334577778899999999853
No 155
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=29.77 E-value=1.2e+02 Score=26.54 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=39.6
Q ss_pred ccH-HHHHHHHHHCCCeeEEE-EecCCCCCcchHHHHHHHHhCCCCeEEEc----------chHHHHhhhcCCcCEEEEc
Q 018280 187 GTA-LGVIRALHSEGVLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 187 ~ta-~~~l~~a~~~g~~~~V~-v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------Dsa~~~~m~~~~vd~VivG 254 (358)
++. ..+|....+.+...+|. |.=.+|...|.+ ...+.|||+..+. |..+...+++.++|.+++.
T Consensus 12 g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a 87 (216)
T 2ywr_A 12 GSNLQAIIDAIESGKVNASIELVISDNPKAYAIE----RCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLA 87 (216)
T ss_dssp CHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHH----HHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHH----HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEe
Confidence 444 44555555544322332 222344444432 2457799998764 2445566777899999886
Q ss_pred ce-eeec
Q 018280 255 AD-RVAA 260 (358)
Q Consensus 255 Ad-~i~~ 260 (358)
+= +|++
T Consensus 88 ~y~~il~ 94 (216)
T 2ywr_A 88 GFMRILS 94 (216)
T ss_dssp SCCSCCC
T ss_pred CchhhCC
Confidence 54 4543
No 156
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=29.65 E-value=1.8e+02 Score=22.41 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=49.2
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCC--CeEEEcchHHHH-hh---------hcCCcCEEEEcceeeecCCceecccc
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAAA-LM---------KDGRVSAVIVGADRVAANGDTANKIG 269 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI--~vtlI~Dsa~~~-~m---------~~~~vd~VivGAd~i~~nG~v~nkiG 269 (358)
..+|.++|..|...- .....|.+.|. .+....+..-+. .+ ++...|.||+..+- .++ -|
T Consensus 4 ~~~ILivddd~~~~~--~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l--~~~-----~g 74 (152)
T 3heb_A 4 SVTIVMIEDDLGHAR--LIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL--PDM-----TG 74 (152)
T ss_dssp -CEEEEECCCHHHHH--HHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC--SSS-----BH
T ss_pred CceEEEEeCCHHHHH--HHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC--CCC-----cH
Confidence 468888888776532 23567888898 677666654442 22 35679999987543 221 23
Q ss_pred cHHHHHHHH---hcCCeEEEeccCcc
Q 018280 270 TYSLALCAK---FHNILFYVAAPLTS 292 (358)
Q Consensus 270 T~~lA~~Ak---~~~iPvyV~a~~~k 292 (358)
--.+..+-+ ..++|+++++....
T Consensus 75 ~~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 75 IDILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred HHHHHHHHhcccccCCCEEEEecCCC
Confidence 223333332 35799999876543
No 157
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=29.62 E-value=66 Score=31.11 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=51.6
Q ss_pred ccccHHH-HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhc---CCcCEEEEcceeeec
Q 018280 185 GYGTALG-VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD---GRVSAVIVGADRVAA 260 (358)
Q Consensus 185 g~~ta~~-~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~---~~vd~VivGAd~i~~ 260 (358)
|+|.+-. +.+.+.++| ..|++.|..|. + ..++.+.|+++.+ -|..=..++.+ .+++.||+..+
T Consensus 11 G~Gr~G~~va~~L~~~g--~~vvvId~d~~----~--v~~~~~~g~~vi~-GDat~~~~L~~agi~~A~~viv~~~---- 77 (413)
T 3l9w_A 11 GFGRFGQITGRLLLSSG--VKMVVLDHDPD----H--IETLRKFGMKVFY-GDATRMDLLESAGAAKAEVLINAID---- 77 (413)
T ss_dssp CCSHHHHHHHHHHHHTT--CCEEEEECCHH----H--HHHHHHTTCCCEE-SCTTCHHHHHHTTTTTCSEEEECCS----
T ss_pred CCCHHHHHHHHHHHHCC--CCEEEEECCHH----H--HHHHHhCCCeEEE-cCCCCHHHHHhcCCCccCEEEECCC----
Confidence 4455533 446666666 46777787764 2 3567788998754 34433333321 56788877654
Q ss_pred CCceecccccHHHHHHHHhcCC--eEEEec
Q 018280 261 NGDTANKIGTYSLALCAKFHNI--LFYVAA 288 (358)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~i--PvyV~a 288 (358)
+.--+..++..||+++. ++++-+
T Consensus 78 -----~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 -----DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp -----SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -----ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 23445677888998875 455433
No 158
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.60 E-value=57 Score=24.78 Aligned_cols=85 Identities=6% Similarity=0.105 Sum_probs=47.5
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHH-HHhhhcCCcCEEEEcceeeecCCcee-cccccHHHHHHHH-
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAK- 278 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~i~~nG~v~-nkiGT~~lA~~Ak- 278 (358)
..+|.++|..|.... .+ ...|.+.|+.+....+..- -..+++...|.||+..+- . |+.. ..-|--.+..+-+
T Consensus 3 ~~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~-~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLT-AV-QLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--T-SGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp CCEEEEECSCHHHHH-HH-HHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--T-C-----CCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHH-HH-HHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--C-CCCCCCccHHHHHHHHHhh
Confidence 357788887765432 23 5568888988886665432 234455678999887542 1 0000 1123222333333
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 78 ~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 78 YRDLPVVLFTAYA 90 (140)
T ss_dssp CTTCCEEEEEEGG
T ss_pred CcCCCEEEEECCC
Confidence 3479999987644
No 159
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=29.56 E-value=1.2e+02 Score=22.71 Aligned_cols=79 Identities=6% Similarity=-0.020 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-c
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-H 280 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~-~ 280 (358)
.+|.+.|..|.... .+ ...|...|..+....+..-+ ..+.+..+|.|++..+- ++. -|--.+..+.+. .
T Consensus 4 ~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 4 KKILVVDDEESIVT-LL-QYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKL-----DGIEVCKQLRQQKL 74 (136)
T ss_dssp CEEEEECSCHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHH-HH-HHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCC--CCC-----CHHHHHHHHHcCCC
Confidence 46778887765432 23 45677889888766654333 33445678999986542 222 132233333333 5
Q ss_pred CCeEEEeccC
Q 018280 281 NILFYVAAPL 290 (358)
Q Consensus 281 ~iPvyV~a~~ 290 (358)
.+|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (136)
T 1mvo_A 75 MFPILMLTAK 84 (136)
T ss_dssp CCCEEEEECT
T ss_pred CCCEEEEECC
Confidence 7899988654
No 160
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=29.45 E-value=73 Score=28.88 Aligned_cols=99 Identities=22% Similarity=0.181 Sum_probs=53.1
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cc-hHHHHhhhc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKD 245 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m~~ 245 (358)
+.+||..+-+|.+ | ..+.+.+.++| .+|+++..+|.. .++.+... .| ..+..++
T Consensus 19 ~~~vlVtGatG~i-----G--~~l~~~L~~~G--~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~-- 75 (347)
T 4id9_A 19 SHMILVTGSAGRV-----G--RAVVAALRTQG--RTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAI-- 75 (347)
T ss_dssp --CEEEETTTSHH-----H--HHHHHHHHHTT--CCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHH--
T ss_pred CCEEEEECCCChH-----H--HHHHHHHHhCC--CEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHH--
Confidence 4566666545432 2 23445666666 466666544432 22222111 12 2344566
Q ss_pred CCcCEEEEcceeeecCCc------eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 246 GRVSAVIVGADRVAANGD------TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~------v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.++|.|+--|-....+.. -.|-.||..+.-+|+.++++-+|...+
T Consensus 76 ~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 76 MGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp TTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 688888766532221111 146789999999999999865554444
No 161
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=29.09 E-value=45 Score=30.99 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhC-CCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCC--c
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD-RIPATLIADSAAAALMKDGRVSAVIVGADRVAANG--D 263 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~-GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG--~ 263 (358)
..+..++..+.+.|.+.-|+..+.-|..+-.++ ...+.+. |+. +|-.+..+.+- +...+.-.-+..+..-| +
T Consensus 82 ~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l-~~~a~~~~gi~--liGPnc~Gii~--p~~~~~~~~~~~~~~~G~va 156 (305)
T 2fp4_A 82 PFAAAAINEAIDAEVPLVVCITEGIPQQDMVRV-KHRLLRQGKTR--LIGPNCPGVIN--PGECKIGIMPGHIHKKGRIG 156 (305)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHTTCSSCE--EECSSSCEEEE--TTTEEEESSCGGGCCEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHHHHHH-HHHHHhcCCcE--EEeCCCCeEec--ccccceeeccccCCCCCCEE
Confidence 467788888988888777788887765443344 3345556 664 67777777655 43322221122233345 4
Q ss_pred eecccccHHHHHH--HHhcCCeEEEe
Q 018280 264 TANKIGTYSLALC--AKFHNILFYVA 287 (358)
Q Consensus 264 v~nkiGT~~lA~~--Ak~~~iPvyV~ 287 (358)
++.+.||...+++ +...|+.|--+
T Consensus 157 ~vSqSG~l~~~~~~~~~~~g~G~S~~ 182 (305)
T 2fp4_A 157 IVSRSGTLTYEAVHQTTQVGLGQSLC 182 (305)
T ss_dssp EEESCSHHHHHHHHHHHHTTCCEEEE
T ss_pred EEecchHHHHHHHHHHHhcCCCeeEE
Confidence 6999999988775 66778887643
No 162
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=29.09 E-value=26 Score=33.84 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=34.2
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCcccc
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~ 294 (358)
..+ ...|+||.|=-++ |.....---...+|-.||. +|||+++|.+...+
T Consensus 274 ~~l--~~ADLVITGEG~~--D~QT~~GK~p~gVa~~A~~-~~PviaiaG~~~~~ 322 (371)
T 1to6_A 274 KKV--SDVDLVIVGEGRL--DRQSLAGKAPIGVAKRTPV-GVPVVAICGSLVED 322 (371)
T ss_dssp HHT--TTCSEEEECCSEE--CSTTTTTCHHHHHHTTSCT-TCCEEEEESEECTT
T ss_pred HHh--cCCCEEEECCCCC--CCCCCCCcHHHHHHHHHhc-CCCEEEEeCCCCCC
Confidence 345 8999999997665 2223332334567778999 99999999876533
No 163
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=28.98 E-value=1.4e+02 Score=24.24 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=51.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH-Hh
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-KF 279 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A-k~ 279 (358)
..+|.++|..|.... .....|.+.|..|....|..-+ ..+++..+|.|++..+ ++++ -|--.+..+- +.
T Consensus 7 ~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAG--TLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGND-----SGLSLIAPLCDLQ 77 (184)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTE-----ESHHHHHHHHHHC
T ss_pred CCeEEEEcCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCc-----cHHHHHHHHHhcC
Confidence 457888888876532 2355688889988777766544 3455677999998654 3332 2333333332 34
Q ss_pred cCCeEEEeccCc
Q 018280 280 HNILFYVAAPLT 291 (358)
Q Consensus 280 ~~iPvyV~a~~~ 291 (358)
.++|+++++...
T Consensus 78 ~~~~ii~lt~~~ 89 (184)
T 3rqi_A 78 PDARILVLTGYA 89 (184)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCCEEEEeCCC
Confidence 579999987644
No 164
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=28.81 E-value=1.8e+02 Score=25.53 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=53.7
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC---c-chHHHHHHHHhCCCCeEEE--cc-hHHHHh
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN---Q-GSRLTAFELVHDRIPATLI--AD-SAAAAL 242 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~---q-G~rlta~eL~~~GI~vtlI--~D-sa~~~~ 242 (358)
.+||..+-+|.+ | ..+++.+.++| .+|+++--++.. . ..+. ..+|...|+.+... .| .++..+
T Consensus 5 ~~ilVtGatG~i-----G--~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~ 74 (308)
T 1qyc_A 5 SRILLIGATGYI-----G--RHVAKASLDLG--HPTFLLVRESTASSNSEKAQL-LESFKASGANIVHGSIDDHASLVEA 74 (308)
T ss_dssp CCEEEESTTSTT-----H--HHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHH-HHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred CEEEEEcCCcHH-----H--HHHHHHHHhCC--CCEEEEECCcccccCHHHHHH-HHHHHhCCCEEEEeccCCHHHHHHH
Confidence 346655545433 2 23456666667 455555433321 1 1111 13455667654321 12 345556
Q ss_pred hhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC-CeEEEe
Q 018280 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (358)
Q Consensus 243 m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-iPvyV~ 287 (358)
+ ..+|.||.-| +..+-.|+..++-+|+..| ++-+|.
T Consensus 75 ~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 75 V--KNVDVVISTV-------GSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp H--HTCSEEEECC-------CGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred H--cCCCEEEECC-------cchhhhhHHHHHHHHHhcCCCceEee
Confidence 6 5677666544 2334568888999999998 888774
No 165
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.78 E-value=1.1e+02 Score=22.33 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=45.3
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHH-HhcC
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-KFHN 281 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A-k~~~ 281 (358)
+|.+.|..|.... .+ ...|.+.|..+....+..-+ ..+++...|.+++..+ +++++ |--.+..+- +..+
T Consensus 2 ~ilivdd~~~~~~-~l-~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~-----g~~~~~~l~~~~~~ 72 (121)
T 2pl1_A 2 RVLVVEDNALLRH-HL-KVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDED-----GLSLIRRWRSNDVS 72 (121)
T ss_dssp EEEEECSCHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSC-----HHHHHHHHHHTTCC
T ss_pred eEEEEeCcHHHHH-HH-HHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCC-----HHHHHHHHHhcCCC
Confidence 5677777665422 22 45678889988877765433 3445567899988654 23221 222222222 2357
Q ss_pred CeEEEeccC
Q 018280 282 ILFYVAAPL 290 (358)
Q Consensus 282 iPvyV~a~~ 290 (358)
+|+++++..
T Consensus 73 ~~ii~~s~~ 81 (121)
T 2pl1_A 73 LPILVLTAR 81 (121)
T ss_dssp SCEEEEESC
T ss_pred CCEEEEecC
Confidence 999988654
No 166
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.75 E-value=1.5e+02 Score=24.35 Aligned_cols=80 Identities=5% Similarity=-0.063 Sum_probs=47.3
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHH-hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-hc
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-~~ 280 (358)
.+|.++|..|.... .+ ...|...|+.|....+..-+. .+++..+|.|++..+ ++++ -|--.+..+-+ ..
T Consensus 5 ~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 5 PTVFVVDDDMSVRE-GL-RNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGM-----SGIELQEQLTAISD 75 (208)
T ss_dssp CEEEEECSCHHHHH-HH-HHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEcCCHHHHH-HH-HHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 46888887776532 12 456778899888666554432 344567898888543 3332 13222333322 34
Q ss_pred CCeEEEeccCc
Q 018280 281 NILFYVAAPLT 291 (358)
Q Consensus 281 ~iPvyV~a~~~ 291 (358)
++|+++++...
T Consensus 76 ~~~ii~ls~~~ 86 (208)
T 1yio_A 76 GIPIVFITAHG 86 (208)
T ss_dssp CCCEEEEESCT
T ss_pred CCCEEEEeCCC
Confidence 79999987643
No 167
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=28.73 E-value=2.6e+02 Score=26.90 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHhCCCCeEEEcc--------hHHHHhhhc-CCcCEEEEcceeeecCCceecccccH----HHHHHHHh--cCCeEEEe
Q 018280 224 LVHDRIPATLIAD--------SAAAALMKD-GRVSAVIVGADRVAANGDTANKIGTY----SLALCAKF--HNILFYVA 287 (358)
Q Consensus 224 L~~~GI~vtlI~D--------sa~~~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~----~lA~~Ak~--~~iPvyV~ 287 (358)
+...|+.+..++- ..+...+++ ++..+|++.. +-|...|..|+. .++-+||+ ||++++|=
T Consensus 144 l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~----s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD 218 (427)
T 3i16_A 144 LKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR----STGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218 (427)
T ss_dssp TGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC----SCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc----CCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5567998887753 234444532 4555665532 224467777874 46677899 99999874
No 168
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=28.48 E-value=3.9e+02 Score=26.57 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=70.2
Q ss_pred HHHHHH--hHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHHCC-CeeEEEEecCCCC----------------
Q 018280 155 SYGASF--LQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHSEG-VLERAYCSETRPF---------------- 213 (358)
Q Consensus 155 ~~~~~~--i~~~~~~~~~~ILT~~~sg~lat~g~~t-a~~-~l~~a~~~g-~~~~V~v~EsrP~---------------- 213 (358)
+.++++ |+ +|++|..+..+ |... +.. +.+.+.+++ ++++++..-..+.
T Consensus 50 eEAv~~~~Ik-----dG~tV~~gg~~------G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~ 118 (509)
T 1xr4_A 50 EEAIRRSGLK-----NGMTISFHHAF------RGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQI 118 (509)
T ss_dssp HHHHHHTTCC-----TTCEEEECCTT------GGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEE
T ss_pred HHHhcCCCCC-----CcCEEEECCcc------CCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEE
Confidence 445667 77 89999987543 2332 233 344444444 4677775322221
Q ss_pred ---CcchHHHHHHHHh---CCCCeEEEcchHHHHhhhc--CCcCEEEEcceeeecCCceeccc-----ccHHHHHHHHhc
Q 018280 214 ---NQGSRLTAFELVH---DRIPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTANKI-----GTYSLALCAKFH 280 (358)
Q Consensus 214 ---~qG~rlta~eL~~---~GI~vtlI~Dsa~~~~m~~--~~vd~VivGAd~i~~nG~v~nki-----GT~~lA~~Ak~~ 280 (358)
+-|..+ +++.. ..+|..+.+-....+++.. -++|..++.|...-.+|.+.=.- ++...+.++...
T Consensus 119 ~~~~~g~~~--r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~ 196 (509)
T 1xr4_A 119 YTSGLRGKL--GEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQY 196 (509)
T ss_dssp EESBCCHHH--HHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHH
T ss_pred EEccCCHHH--HHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhh
Confidence 112221 23333 3378887753346667642 37999999999998999876422 366666667777
Q ss_pred CCeEEEe
Q 018280 281 NILFYVA 287 (358)
Q Consensus 281 ~iPvyV~ 287 (358)
..-|++-
T Consensus 197 A~~VIaE 203 (509)
T 1xr4_A 197 AKCVVLL 203 (509)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7766654
No 169
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=28.33 E-value=2.5e+02 Score=24.54 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=35.0
Q ss_pred HHHhCCCCeEEE--cc-hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC-CeEEEe
Q 018280 223 ELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (358)
Q Consensus 223 eL~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-iPvyV~ 287 (358)
+|...|+.+... .| ..+..++ ..+|.||--| +..+-.|+..+.-+|+..| ++-+|.
T Consensus 51 ~l~~~~v~~v~~D~~d~~~l~~~~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 51 NYQSLGVILLEGDINDHETLVKAI--KQVDIVICAA-------GRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp HHHHTTCEEEECCTTCHHHHHHHH--TTCSEEEECS-------SSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred HHHhCCCEEEEeCCCCHHHHHHHH--hCCCEEEECC-------cccccccHHHHHHHHHhcCCceEEee
Confidence 456677754322 12 3455666 5677666543 2233567888888899998 887773
No 170
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=28.08 E-value=3.7e+02 Score=25.00 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-eeEEE----EecCCCCCc--------c---
Q 018280 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-LERAY----CSETRPFNQ--------G--- 216 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~-~~~V~----v~EsrP~~q--------G--- 216 (358)
++..+.+.|. +.+|+..+ +|.+ --.+++.+...|. .+.++ |.++.-..| |
T Consensus 26 ~G~~~q~~L~------~~~VlivG-~GGl-------G~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~K 91 (346)
T 1y8q_A 26 WGLEAQKRLR------ASRVLLVG-LKGL-------GAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNR 91 (346)
T ss_dssp HCHHHHHHHH------TCEEEEEC-CSHH-------HHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBH
T ss_pred hCHHHHHHHh------CCeEEEEC-CCHH-------HHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCH
Confidence 5677778887 45777765 3422 2334455555575 34444 111111111 2
Q ss_pred hHHHHHHHHhC--CCCeEEEcchH---HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 217 SRLTAFELVHD--RIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 217 ~rlta~eL~~~--GI~vtlI~Dsa---~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+...+..|.+. +++++.++..- ...++ .+.|.||.+.|..- --+.+.-.|+.+++||+.+
T Consensus 92 a~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~--~~~dvVv~~~d~~~---------~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 92 AEASLERAQNLNPMVDVKVDTEDIEKKPESFF--TQFDAVCLTCCSRD---------VIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp HHHHHHHHHHTCTTSEEEEECSCGGGCCHHHH--TTCSEEEEESCCHH---------HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhHCCCeEEEEEecccCcchHHHh--cCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 22335566664 56777765432 34456 78999988766432 2345677899999999976
No 171
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=27.99 E-value=67 Score=33.65 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCc--chHHHHHHHHhCCCCeEEE
Q 018280 187 GTALGVIRALHSEGVLERAYCSETRPFNQ--GSRLTAFELVHDRIPATLI 234 (358)
Q Consensus 187 ~ta~~~l~~a~~~g~~~~V~v~EsrP~~q--G~rlta~eL~~~GI~vtlI 234 (358)
+.+...|..|.++|++.+|.+.-.....+ ..+. ++.|.++|+.|.+-
T Consensus 384 s~Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~w-a~~Le~aGv~Vv~g 432 (705)
T 2o8r_A 384 SSIISALEAAAQSGKKVSVFVELKARFDEENNLRL-SERMRRSGIRIVYS 432 (705)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCC----CHHH-HHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHH-HHHHHHCCCEEEEc
Confidence 45667777788889999988874433333 3333 67899999988773
No 172
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=27.93 E-value=40 Score=27.91 Aligned_cols=78 Identities=10% Similarity=-0.063 Sum_probs=48.3
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh-
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (358)
+..+|.++|..|.... .....|...|+.+....++.-+ + ...+|.|++..+ +++. + |. ....+.+.
T Consensus 11 ~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a--l-~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~ 77 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSD--ALVLQLIRIGCSVRQCWPPPEA--F-DVPVDVVFTSIF--QNRH---H--DE-IAALLAAGT 77 (196)
T ss_dssp GGCEEEEESCTTHHHH--HHHHHHHHHTCEEEEECSCCSS--C-SSCCSEEEEECC--SSTH---H--HH-HHHHHHHSC
T ss_pred cCCeEEEEcCChhHHH--HHHHHHHHcCCeEEEecCchhh--C-CCCCCEEEEeCC--CCcc---c--hH-HHHHHhccC
Confidence 3567888888776532 2245677789988877765532 2 367899888643 2322 1 43 33344444
Q ss_pred cCCeEEEeccCc
Q 018280 280 HNILFYVAAPLT 291 (358)
Q Consensus 280 ~~iPvyV~a~~~ 291 (358)
..+|+++++...
T Consensus 78 ~~~~ii~lt~~~ 89 (196)
T 1qo0_D 78 PRTTLVALVEYE 89 (196)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCCEEEEEcCC
Confidence 589999986543
No 173
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=27.87 E-value=91 Score=26.08 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=51.6
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cchHHHHhhhcCCcCEEEEcceee-ecCCceecc
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--ADSAAAALMKDGRVSAVIVGADRV-AANGDTANK 267 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~Dsa~~~~m~~~~vd~VivGAd~i-~~nG~v~nk 267 (358)
.+.+.+.++|. +|+++.-+| .+ ..+|...++.+... .|... ..+ ..+|.||--|-.. ...-.-.|-
T Consensus 15 ~l~~~L~~~g~--~V~~~~R~~----~~--~~~~~~~~~~~~~~D~~d~~~-~~~--~~~d~vi~~ag~~~~~~~~~~n~ 83 (224)
T 3h2s_A 15 AIVAEARRRGH--EVLAVVRDP----QK--AADRLGATVATLVKEPLVLTE-ADL--DSVDAVVDALSVPWGSGRGYLHL 83 (224)
T ss_dssp HHHHHHHHTTC--EEEEEESCH----HH--HHHHTCTTSEEEECCGGGCCH-HHH--TTCSEEEECCCCCTTSSCTHHHH
T ss_pred HHHHHHHHCCC--EEEEEEecc----cc--cccccCCCceEEecccccccH-hhc--ccCCEEEECCccCCCcchhhHHH
Confidence 35566666674 566654332 12 23455556544321 22222 556 7888888766332 112234588
Q ss_pred cccHHHHHHHHhcCCeEEEecc
Q 018280 268 IGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 268 iGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
.||..+.-+|+..+..|+.++.
T Consensus 84 ~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 84 DFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp HHHHHHHHTCTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEEec
Confidence 8999999999999977777653
No 174
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=27.52 E-value=89 Score=28.72 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC--CCeeEEEEecC------CCCCcchHHH
Q 018280 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE--GVLERAYCSET------RPFNQGSRLT 220 (358)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~--g~~~~V~v~Es------rP~~qG~rlt 220 (358)
..+.|++.++++|.+.+. ++++|.. . +| +|...+.+..... .++.+|+-..+ .|..+...+
T Consensus 91 ~k~~ia~~AA~~l~~~i~-~~~~igl-~-~G-------sT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i- 159 (315)
T 2w48_A 91 QLSAMGQHGALLVDRLLE-PGDIIGF-S-WG-------RAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTL- 159 (315)
T ss_dssp HHHHHHHHHHHHHHHHCC-TTCEEEE-C-CS-------HHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHH-
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEE-C-Ch-------HHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHH-
Confidence 346688888888655433 6776543 2 22 4666666655332 24677776632 223233333
Q ss_pred HHHHHhC-CCCeEEE--cc----hHHHHhhhc-----------CCcCEEEEcce
Q 018280 221 AFELVHD-RIPATLI--AD----SAAAALMKD-----------GRVSAVIVGAD 256 (358)
Q Consensus 221 a~eL~~~-GI~vtlI--~D----sa~~~~m~~-----------~~vd~VivGAd 256 (358)
+..|.+. |+++..+ |+ ......+.+ +++|+.|+|.-
T Consensus 160 ~~~la~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG 213 (315)
T 2w48_A 160 TYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG 213 (315)
T ss_dssp HHHHHHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCB
T ss_pred HHHHHHHHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccC
Confidence 5566653 7765433 21 222222222 68999999987
No 175
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=27.37 E-value=1.5e+02 Score=27.61 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=44.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEe-cCCCCCcchHHHHHHHHhCCCCeEEEc---------chHHHHhhhcCCcCEEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAYCS-ETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~v~-EsrP~~qG~rlta~eL~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (358)
|.|+.+.-|..+++.|. ..+|.++ =.+|...+ + ..+.|||+..++ |..+...+++.++|++++
T Consensus 114 g~g~nl~~ll~~~~~g~l~~~I~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVl 187 (302)
T 3o1l_A 114 RESHCLADLLHRWHSDELDCDIACVISNHQDLRS--M----VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVL 187 (302)
T ss_dssp SCCHHHHHHHHHHHTTCSCSEEEEEEESSSTTHH--H----HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCchhHHHHHHHHHCCCCCcEEEEEEECcHHHHH--H----HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEH
Confidence 44777776666666664 3343333 33665422 2 347899999884 345667777889999988
Q ss_pred cce-eeec
Q 018280 254 GAD-RVAA 260 (358)
Q Consensus 254 GAd-~i~~ 260 (358)
..= +|++
T Consensus 188 agym~IL~ 195 (302)
T 3o1l_A 188 ARYMQILP 195 (302)
T ss_dssp SSCCSCCC
T ss_pred hHhhhhcC
Confidence 654 4554
No 176
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=26.75 E-value=94 Score=23.87 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=27.3
Q ss_pred HhhhcCCcCEEEEcceeeecCCceec-ccccHHHHHHHHhcCCeEEEe
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.+.++.++|++++|+..- |..-. -.|+..-.+ .++-++||+|+
T Consensus 93 ~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 93 QAARAEKADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp HHHHHTTCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHcCCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 334456899999998753 22222 256555444 45578999986
No 177
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=26.73 E-value=1.4e+02 Score=25.03 Aligned_cols=81 Identities=7% Similarity=-0.019 Sum_probs=49.3
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCC-CeEEEcchHHHH-hhhc-------------CCcCEEEEcceeeecCCcee
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAAAA-LMKD-------------GRVSAVIVGADRVAANGDTA 265 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI-~vtlI~Dsa~~~-~m~~-------------~~vd~VivGAd~i~~nG~v~ 265 (358)
...+|.++|..|...- +....|.+.|+ .|....+..-+. .+++ ..+|+||+... +++.
T Consensus 60 ~~~~ILiVdDd~~~~~--~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~--- 132 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRK--VATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEM--- 132 (206)
T ss_dssp TTCEEEEECSCHHHHH--HHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSS---
T ss_pred CCCEEEEEeCCHHHHH--HHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCC---
Confidence 3568888888876532 33567888998 677776654443 2322 27999998643 2322
Q ss_pred cccccHHHHHHHHh-----cCCeEEEeccC
Q 018280 266 NKIGTYSLALCAKF-----HNILFYVAAPL 290 (358)
Q Consensus 266 nkiGT~~lA~~Ak~-----~~iPvyV~a~~ 290 (358)
-|--.+..+-+. .++|+++++..
T Consensus 133 --~G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 133 --DGYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp --CHHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred --CHHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 233333333332 57999998654
No 178
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.62 E-value=1.2e+02 Score=23.04 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=50.3
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHh-CCCCeEEEcchHHH-Hhhhc-CCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIADSAAA-ALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vtlI~Dsa~~-~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
..+|.++|..|.... .+ ...|.+ .|+.+....+..-+ ..+++ ...|.||+..+- .+ ..-|--.+..+-+
T Consensus 4 ~~~ilivdd~~~~~~-~l-~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~----~~~g~~~~~~l~~ 75 (140)
T 3lua_A 4 DGTVLLIDYFEYERE-KT-KIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF--PV----EKEGLEVLSAIRN 75 (140)
T ss_dssp CCEEEEECSCHHHHH-HH-HHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS--SS----HHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHH-HH-HHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCC--CC----CCcHHHHHHHHHh
Confidence 467888888876532 23 456777 89999877766544 34555 679999886532 20 1123333333333
Q ss_pred ---hcCCeEEEeccCc
Q 018280 279 ---FHNILFYVAAPLT 291 (358)
Q Consensus 279 ---~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 76 ~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 76 NSRTANTPVIIATKSD 91 (140)
T ss_dssp SGGGTTCCEEEEESCC
T ss_pred CcccCCCCEEEEeCCC
Confidence 4689999987643
No 179
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=26.46 E-value=1.1e+02 Score=25.29 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
+..|...|+++..+.|... ..+ .+=|.||+ |...|.. .-+..++-.||..|+|++.++..
T Consensus 56 ~~~l~~~g~~~~~~~~~~~-~~~--~~~d~vI~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 56 AMRLMHMGFNAHIVGEILT-PPL--AEGDLVII----GSGSGET---KSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp HHHHHHTTCCEEETTSTTC-CCC--CTTCEEEE----ECSSSCC---HHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHhcCCeEEEeCcccc-cCC--CCCCEEEE----EcCCCCc---HHHHHHHHHHHHCCCEEEEEECC
Confidence 3445666777777766532 223 44455543 3345543 33667788999999999988654
No 180
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=26.30 E-value=90 Score=22.89 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=47.1
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh--
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (358)
.+|.+.|..|.... .+ ...|.+.|+.+....+..-+ ..+++...|.|++..+- .+ ..-|--.+..+-+.
T Consensus 6 ~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~--~~----~~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALSA-TL-RSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDL--SA----GQNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHHH-HH-HHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBC--GG----GCBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHH-HH-HHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCC--CC----CCCHHHHHHHHhcCcc
Confidence 47888888775432 23 55688889988877664433 33445678999987642 20 11232333333332
Q ss_pred -cCCeEEEeccC
Q 018280 280 -HNILFYVAAPL 290 (358)
Q Consensus 280 -~~iPvyV~a~~ 290 (358)
.++|++++ ..
T Consensus 78 ~~~~~ii~~-~~ 88 (127)
T 2gkg_A 78 LKNVPIVII-GN 88 (127)
T ss_dssp TTTSCEEEE-EC
T ss_pred ccCCCEEEE-ec
Confidence 57999988 43
No 181
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=26.21 E-value=2e+02 Score=23.16 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCccc--ccccccHHHHHHHHH--HCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEE----EcchHH
Q 018280 168 SKFSVLTHCNTGSLA--TAGYGTALGVIRALH--SEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL----IADSAA 239 (358)
Q Consensus 168 ~~~~ILT~~~sg~la--t~g~~ta~~~l~~a~--~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtl----I~Dsa~ 239 (358)
++.+|+..+ .+- .-|...++..+.... +++..+++++.-..|...-..+ ...+.+.| .+++ +++..+
T Consensus 35 ~~~~i~~~G---~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l-~~~~~~~~-~v~~~~g~~~~~~~ 109 (200)
T 2bfw_A 35 EGVTFMFIG---RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWA-RSLEEKHG-NVKVITEMLSREFV 109 (200)
T ss_dssp SCEEEEEES---CBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHH-HHHHHHCT-TEEEECSCCCHHHH
T ss_pred CCCEEEEee---ccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHH-HHHHHhcC-CEEEEeccCCHHHH
Confidence 345666554 332 122333445555554 4556788777765441011223 23345666 7777 455577
Q ss_pred HHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 240 ~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
..+| ..+|.+++.... .| .| ...+=|-.+|+|+++.
T Consensus 110 ~~~~--~~ad~~l~ps~~---e~-----~~--~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 110 RELY--GSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 145 (200)
T ss_dssp HHHH--TTCSEEEECCSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHH--HHCCEEEECCCC---CC-----cc--HHHHHHHHCCCCEEEe
Confidence 8888 899999886432 22 12 2345667789998774
No 182
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=25.80 E-value=56 Score=31.69 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.+.+||..+.. +.-..+...+++.+...+||+. |.+-|... +. .-+++....-.++..+.++.+
T Consensus 20 ~~m~ilvlG~g--------gre~ala~~l~~s~~v~~v~~~---pgn~g~~~----~~-~~~~i~~~d~~~l~~~a~~~~ 83 (442)
T 3lp8_A 20 GSMNVLVIGSG--------GREHSMLHHIRKSTLLNKLFIA---PGREGMSG----LA-DIIDIDINSTIEVIQVCKKEK 83 (442)
T ss_dssp CCEEEEEEECS--------HHHHHHHHHHTTCTTEEEEEEE---ECCGGGTT----TS-EECCCCTTCHHHHHHHHHHTT
T ss_pred CCCEEEEECCC--------hHHHHHHHHHHhCCCCCEEEEE---CCChHHhh----cc-ceeecCcCCHHHHHHHHHHhC
Confidence 34789988643 2333445666666666778887 44444321 11 111111111133444455677
Q ss_pred cCEEEEcceeee
Q 018280 248 VSAVIVGADRVA 259 (358)
Q Consensus 248 vd~VivGAd~i~ 259 (358)
+|.|++|.+..+
T Consensus 84 id~vv~g~E~~l 95 (442)
T 3lp8_A 84 IELVVIGPETPL 95 (442)
T ss_dssp CCEEEECSHHHH
T ss_pred CCEEEECCcHHH
Confidence 888888766544
No 183
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=25.60 E-value=92 Score=23.03 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCe
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPA 231 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~v 231 (358)
.+..|+.||.+|. ........+.+.|- .|++.+. | +.+| .+.|.||
T Consensus 55 ~~~~ivvyC~~g~-------rs~~a~~~L~~~G~--~v~~l~G-----G--~~~W--~~~g~pv 100 (100)
T 3foj_A 55 DNETYYIICKAGG-------RSAQVVQYLEQNGV--NAVNVEG-----G--MDEF--GDEGLEH 100 (100)
T ss_dssp TTSEEEEECSSSH-------HHHHHHHHHHTTTC--EEEEETT-----H--HHHH--CSSSCBC
T ss_pred CCCcEEEEcCCCc-------hHHHHHHHHHHCCC--CEEEecc-----c--HHHH--HHcCCCC
Confidence 4578999998863 22223334444564 6776653 3 3344 4566654
No 184
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=25.54 E-value=52 Score=25.16 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred hhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 243 m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
++++++.+||+..|. -.| +..-+-..|++++||+|..
T Consensus 28 i~~gka~lViiA~D~-~~~-------~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 28 AKMGGAKLIIVARNA-RPD-------IKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHTCCSEEEEETTS-CHH-------HHHHHHHHHHHHTCCEEEE
T ss_pred HHcCCCcEEEEeCCC-CHH-------HHHHHHHHHHhcCCCEEEe
Confidence 455889999998882 222 3345566799999999875
No 185
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=25.45 E-value=70 Score=28.56 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=33.7
Q ss_pred chHHHHhhhcCCcCEEEEcceeeecCCc--------eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 236 DSAAAALMKDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 236 Dsa~~~~m~~~~vd~VivGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|..+..++ .++|.|+--|-....+.+ -.|-.||..+.-+|+.++++-+|...+
T Consensus 54 ~~~~~~~~--~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 54 ADDIKDYL--KGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp TSCCHHHH--TTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hHHHHHHh--cCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 44556667 688888866532211111 147789999999999999865554444
No 186
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=25.17 E-value=87 Score=27.31 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=54.6
Q ss_pred ecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcch-----HH--HHHHHHhCCCCeEEEcch-HHHHhhhcC
Q 018280 175 HCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGS-----RL--TAFELVHDRIPATLIADS-AAAALMKDG 246 (358)
Q Consensus 175 ~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~-----rl--ta~eL~~~GI~vtlI~Ds-a~~~~m~~~ 246 (358)
.+=||+.++ |.-+..+++.+.+.|...+|+++++.-..-.. .+ +...+. |-++. .|- .+.++=..+
T Consensus 12 lgiTGs~aa--~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~~~~~~~~~~~l~~l~--g~~v~--~~~~~~~hi~~s~ 85 (201)
T 3lqk_A 12 FGLTGSHCT--YHEVLPQMERLVELGAKVTPFVTHTVQTTDTKFGESSEWINKIKQIT--EEPIV--DSMVKAEPFGPKT 85 (201)
T ss_dssp EECCSCGGG--GGGTHHHHHHHHHTTCEEEEECSSCSCCTTCCTTCSCHHHHHHHHHC--CSCCB--CSHHHHGGGTTTS
T ss_pred EEEEChHHH--HHHHHHHHHHHhhCCCEEEEEEChhHHHHHHHhhchhHHHHHHHHHh--CCCeE--eecCccccccccc
Confidence 344677553 32245677888888989999998875433111 00 112233 33332 110 122222236
Q ss_pred CcCEEEEcceeeecCCceecccccHHHHHHHHh---cCCeEEEe
Q 018280 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKF---HNILFYVA 287 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~---~~iPvyV~ 287 (358)
..|.+++.--..-.=+.++|-+.--.+..+|.. .+.|++++
T Consensus 86 ~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~ 129 (201)
T 3lqk_A 86 PLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVG 129 (201)
T ss_dssp CCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEE
T ss_pred ccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEE
Confidence 789888763322111233444444444444443 58998876
No 187
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=25.17 E-value=1.1e+02 Score=25.03 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=49.4
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc----hHHHHhhhcCCcCEEEEcceeeec-CCcee
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAA-NGDTA 265 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~-nG~v~ 265 (358)
.+.+.+.++| .+|+++.-+|.. + .++...++.+. ..| ..+..++ .++|.|+--|-.... +-.-+
T Consensus 18 ~l~~~l~~~g--~~V~~~~r~~~~----~--~~~~~~~~~~~-~~D~~~~~~~~~~~--~~~d~vi~~a~~~~~~~~~~~ 86 (206)
T 1hdo_A 18 TTLAQAVQAG--YEVTVLVRDSSR----L--PSEGPRPAHVV-VGDVLQAADVDKTV--AGQDAVIVLLGTRNDLSPTTV 86 (206)
T ss_dssp HHHHHHHHTT--CEEEEEESCGGG----S--CSSSCCCSEEE-ESCTTSHHHHHHHH--TTCSEEEECCCCTTCCSCCCH
T ss_pred HHHHHHHHCC--CeEEEEEeChhh----c--ccccCCceEEE-EecCCCHHHHHHHH--cCCCEEEECccCCCCCCccch
Confidence 3556666667 466666544321 1 01112233222 222 3455667 678888766532111 11235
Q ss_pred cccccHHHHHHHHhcCCeEEEeccCc
Q 018280 266 NKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 266 nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
|-.|+..+.-+|+.++++-+|...+.
T Consensus 87 n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 87 MSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 77889999989999998766654443
No 188
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=25.14 E-value=3.5e+02 Score=23.80 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=53.7
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCC-CC---cchHHHHHHHHhCCCCeEEE--cc-hHHHHh
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRP-FN---QGSRLTAFELVHDRIPATLI--AD-SAAAAL 242 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP-~~---qG~rlta~eL~~~GI~vtlI--~D-sa~~~~ 242 (358)
.+||..+-+|.+ | ..+++.+.++|. +|+++--+| .. +..+. ..+|...|+.+... .| .++..+
T Consensus 5 ~~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 5 EKIIIYGGTGYI-----G--KFMVRASLSFSH--PTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp CCEEEETTTSTT-----H--HHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred cEEEEEcCCchh-----H--HHHHHHHHhCCC--cEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHH
Confidence 346655544433 2 234556666674 555554333 11 11111 12355667654332 12 345566
Q ss_pred hhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC-CeEEEe
Q 018280 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (358)
Q Consensus 243 m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-iPvyV~ 287 (358)
+ ..+|.||.-| +..+-.++..+.-+|+..| ++-+|.
T Consensus 75 ~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 75 L--KQVDIVISAL-------PFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp H--TTCSEEEECC-------CGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred H--cCCCEEEECC-------CccchhhHHHHHHHHHHhCCccEEec
Confidence 7 6677666543 2233678888888999998 888773
No 189
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.99 E-value=1.3e+02 Score=25.27 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=49.7
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
.+|.++|..|.... .+ ...|...|+.|....+..-+ ..+++...|.|++..+- ++. -|--.+..+-+..+
T Consensus 5 ~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l--~~~-----~g~~~~~~l~~~~~ 75 (230)
T 2oqr_A 5 TSVLIVEDEESLAD-PL-AFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGM-----SGTDVCKQLRARSS 75 (230)
T ss_dssp CEEEEECSCHHHHH-HH-HHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHHHCS
T ss_pred CeEEEEeCCHHHHH-HH-HHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCC--CCC-----CHHHHHHHHHcCCC
Confidence 57888888876532 13 45677889988866654433 33445678999886542 322 23333444444568
Q ss_pred CeEEEeccCc
Q 018280 282 ILFYVAAPLT 291 (358)
Q Consensus 282 iPvyV~a~~~ 291 (358)
+|+++++...
T Consensus 76 ~~ii~lt~~~ 85 (230)
T 2oqr_A 76 VPVIMVTARD 85 (230)
T ss_dssp CSEEEEECCH
T ss_pred CCEEEEeCCC
Confidence 9999987654
No 190
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=24.93 E-value=1.6e+02 Score=28.48 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=46.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHH-HHHhCCCCeEEEcc---hHHHHhhhcCCcCEEEEcceeee-cCCceec
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAF-ELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGDTAN 266 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~-eL~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~i~-~nG~v~n 266 (358)
+++...+.| -+|++.+ |.+.|..-... .+...|+++++++- ..+...++.+.+.+|++- .+. ..|.+.
T Consensus 145 al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le--~p~NptG~v~- 217 (445)
T 1qgn_A 145 MLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE--SPTNPFLRCV- 217 (445)
T ss_dssp HHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE--SSCTTTCCCC-
T ss_pred HHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEe--CCCCCCCccc-
Confidence 344344444 4666665 66655321111 25678999999863 233344432222555542 222 224332
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 018280 267 KIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 267 kiGT~~lA~~Ak~~~iPvyV 286 (358)
.+ -.++-+||+||++++|
T Consensus 218 dl--~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 218 DI--ELVSKLCHEKGALVCI 235 (445)
T ss_dssp CH--HHHHHHHHHTTCEEEE
T ss_pred CH--HHHHHHHHHcCCEEEE
Confidence 22 4678889999999887
No 191
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=24.85 E-value=74 Score=26.82 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=39.0
Q ss_pred HHHHHhCCCCeEEEcchHHHH----hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 221 AFELVHDRIPATLIADSAAAA----LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~----~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
+..|...|+++..+.|+...+ .+ .+=|.||+ +...|.. .-+..++-.||..|+|++.++.
T Consensus 64 ~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~dvvI~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~ 127 (201)
T 3fxa_A 64 VHSFNCIERPAVFLTPSDAVHGTLGVL--QKEDILIL----ISKGGNT---GELLNLIPACKTKGSTLIGVTE 127 (201)
T ss_dssp HHHHHHTTCCEEECCHHHHTTTGGGGC--CTTCEEEE----ECSSSCC---HHHHTTHHHHHHHTCEEEEEES
T ss_pred HHHHHhcCCcEEEeCchHHHhhhhhcC--CCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEEC
Confidence 445667788888888764322 13 34466654 3345643 2355677889999999999864
No 192
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=24.83 E-value=1.7e+02 Score=24.27 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=48.9
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-hc
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-~~ 280 (358)
.+|.++|..|.... .+ ...|...|+.+....+..-+ ..+++...|.|++..+- +++ -|--.+..+-+ ..
T Consensus 3 ~~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l--~~~-----~g~~~~~~lr~~~~ 73 (225)
T 1kgs_A 3 VRVLVVEDERDLAD-LI-TEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVH-----DGWEILKSMRESGV 73 (225)
T ss_dssp CEEEEECSSHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHHTTC
T ss_pred ceEEEEeCCHHHHH-HH-HHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCC-----CHHHHHHHHHhcCC
Confidence 46788888776532 13 45677889988866665433 33455789999886542 322 23333333333 34
Q ss_pred CCeEEEeccCcc
Q 018280 281 NILFYVAAPLTS 292 (358)
Q Consensus 281 ~iPvyV~a~~~k 292 (358)
++|+++++....
T Consensus 74 ~~~ii~ls~~~~ 85 (225)
T 1kgs_A 74 NTPVLMLTALSD 85 (225)
T ss_dssp CCCEEEEESSCH
T ss_pred CCCEEEEeCCCC
Confidence 799999876543
No 193
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=24.68 E-value=1.3e+02 Score=27.31 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=38.1
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchH------HHHhhhc--CCcCEEEEcceeeecCCceecccccHHHHH
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA------AAALMKD--GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa------~~~~m~~--~~vd~VivGAd~i~~nG~v~nkiGT~~lA~ 275 (358)
+|++. .|.+.|... .+...|.++..++-.. ...++++ +++.+|++- .--.+.|.+..+-=--.++-
T Consensus 100 ~vl~~--~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~-~p~nptG~~~~~~~l~~i~~ 173 (364)
T 1lc5_A 100 RAMIV--TPGFAEYGR---ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLC-TPNNPTGLLPERPLLQAIAD 173 (364)
T ss_dssp EEEEE--ESCCTHHHH---HHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEE-SSCTTTCCCCCHHHHHHHHH
T ss_pred eEEEe--CCCcHHHHH---HHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEe-CCCCCCCCCCCHHHHHHHHH
Confidence 55554 366666432 2455688777765221 0112211 445555542 11112233322211134667
Q ss_pred HHHhcCCeEEEe
Q 018280 276 CAKFHNILFYVA 287 (358)
Q Consensus 276 ~Ak~~~iPvyV~ 287 (358)
+|++||+++++=
T Consensus 174 ~~~~~~~~li~D 185 (364)
T 1lc5_A 174 RCKSLNINLILD 185 (364)
T ss_dssp HHHHHTCEEEEE
T ss_pred HhhhcCcEEEEE
Confidence 889999998873
No 194
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=24.52 E-value=2.3e+02 Score=25.52 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=43.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc----------c-hHHHHhhhcCCcCEEEEcceeeec
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------D-SAAAALMKDGRVSAVIVGADRVAA 260 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~----------D-sa~~~~m~~~~vd~VivGAd~i~~ 260 (358)
+++.+.+.| -+|++.+ |.+.+... .+...|.++..++ | ..+-..+ +++...|++- .---+
T Consensus 98 ~~~~l~~~g--d~vl~~~--~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~-~p~np 168 (383)
T 3kax_A 98 SIQAFTKEN--ESVLVQP--PIYPPFFE---MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLC-SPHNP 168 (383)
T ss_dssp HHHHHCCTT--CEEEECS--SCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEE-SSBTT
T ss_pred HHHHhCCCC--CEEEEcC--CCcHHHHH---HHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEe-CCCCC
Confidence 344443334 3455543 66666432 3456677666554 1 1233333 3677777652 21112
Q ss_pred CCceecccccHHHHHHHHhcCCeEEEe
Q 018280 261 NGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
.|.+...--=..++-+|++||+++++=
T Consensus 169 tG~~~~~~~l~~l~~~~~~~~~~li~D 195 (383)
T 3kax_A 169 IGRVWKKEELTKLGSLCTKYNVIVVAD 195 (383)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 233222222223445699999998873
No 195
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=24.46 E-value=97 Score=27.23 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=33.8
Q ss_pred hHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 237 sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
..+..++ ..+|.||.-|-.. +..-.|-.|+..+.-+|+..|++-+|...++
T Consensus 57 ~~l~~~~--~~~d~vi~~a~~~--~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 57 ESMVEAF--KGMDTVVFIPSII--HPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp HHHHHHT--TTCSEEEECCCCC--CSHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred HHHHHHH--hCCCEEEEeCCCC--ccchhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 3455667 6788887665322 1122466788889999999998877765554
No 196
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=24.40 E-value=81 Score=28.12 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=29.4
Q ss_pred HHHhhhcCCcCEEEEcceeeecC--------CceecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 239 AAALMKDGRVSAVIVGADRVAAN--------GDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~i~~n--------G~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+..+++..++|.||--|-....+ ---+|-.||..+.-+|+.+++.|+.+....
T Consensus 52 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 112 (315)
T 2ydy_A 52 VHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDY 112 (315)
T ss_dssp CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred HHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHH
Confidence 33444222588887665332111 112588999999999999998776664433
No 197
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=24.20 E-value=9.8 Score=34.49 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=20.3
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccCc
Q 018280 265 ANKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
.|-.||..+.-+|+.++++-+|...+.
T Consensus 82 ~n~~~~~~l~~~~~~~~~~~~v~~SS~ 108 (321)
T 1e6u_A 82 QNMMIESNIIHAAHQNDVNKLLFLGSS 108 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccH
Confidence 477899999999999998655554443
No 198
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.86 E-value=2e+02 Score=21.26 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=47.1
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCC--CeEEEcchHHH-Hhhhc-------CCcCEEEEcceeeecCCceecccccHH
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD-------GRVSAVIVGADRVAANGDTANKIGTYS 272 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI--~vtlI~Dsa~~-~~m~~-------~~vd~VivGAd~i~~nG~v~nkiGT~~ 272 (358)
.+|.+.|..|.... .....|.+.|. .+....+..-+ ..+++ ...|.|++..+- .+ .-|--.
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~-----~~g~~~ 73 (140)
T 1k68_A 3 KKIFLVEDNKADIR--LIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PK-----KDGREV 73 (140)
T ss_dssp CEEEEECCCHHHHH--HHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SS-----SCHHHH
T ss_pred CeEEEEeCCHHHHH--HHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--Cc-----ccHHHH
Confidence 46888887776532 23556888887 66666654333 23333 579999987643 22 123333
Q ss_pred HHHHHHh---cCCeEEEeccCc
Q 018280 273 LALCAKF---HNILFYVAAPLT 291 (358)
Q Consensus 273 lA~~Ak~---~~iPvyV~a~~~ 291 (358)
+..+-+. .++|+++++...
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHcCcccccccEEEEecCC
Confidence 3333333 479999986643
No 199
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=23.85 E-value=1.3e+02 Score=24.65 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=37.7
Q ss_pred HHHHHhCCCCeEEEcchHHHH----hhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 221 AFELVHDRIPATLIADSAAAA----LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~----~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
+..|...|+++..+.|..... .+ .+=|.||+ +...|. ..-+..++-.||..|+|++.++..
T Consensus 68 ~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~d~vI~----iS~sG~---t~~~~~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 68 AATFASTGTPSFFVHPGEAAHGDLGMV--TPQDVVIA----ISNSGE---SSEITALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp HHHHHTTTCCEEECCTTHHHHHTSTTC--CTTCEEEE----ECSSSC---CHHHHHHHHHHHTTTCCEEEEESC
T ss_pred HHHHHhcCceEEEeCchHHhhhhhccC--CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCCEEEEECC
Confidence 445666777777776654332 12 34455543 223453 233667778899999999988653
No 200
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=23.81 E-value=2.1e+02 Score=20.99 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=46.2
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCC-CeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI-~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
+..+|.+.|..|.... .....|.+.|+ .+....+..-+ ..+.+.++|.|++..+ +++. -|--.+..+-+
T Consensus 3 ~~~~ilivdd~~~~~~--~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~ 73 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRR--IVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRA 73 (128)
T ss_dssp TTCCEEEECSCHHHHH--HHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC
T ss_pred CccEEEEECCCHHHHH--HHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 4567888888776532 22456778888 56666654333 3445567899988543 3322 13222222322
Q ss_pred ---hcCCeEEEeccC
Q 018280 279 ---FHNILFYVAAPL 290 (358)
Q Consensus 279 ---~~~iPvyV~a~~ 290 (358)
...+|+++++..
T Consensus 74 ~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 74 XXAMSALPVLMVTAE 88 (128)
T ss_dssp --CCTTCCEEEEESS
T ss_pred hcccCCCcEEEEecC
Confidence 136899988654
No 201
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=23.81 E-value=5.4e+02 Score=25.45 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=50.3
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEec---CCCC----------Cc---chHHHHHHHHhCCCCeEE
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSE---TRPF----------NQ---GSRLTAFELVHDRIPATL 233 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~E---srP~----------~q---G~rlta~eL~~~GI~vtl 233 (358)
+.|+++..+ ||+...+++.+..-++.+-++-+. .-|+ +| |.+.++.-|.+.|||.++
T Consensus 74 dgvi~~~~T-------Fs~a~~~i~~l~~l~~PvL~~~~q~~~~ip~~~id~d~m~lnqsacG~~e~~~~l~r~gi~~~~ 146 (500)
T 4f2d_A 74 AGLVVWLHT-------FSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAV 146 (500)
T ss_dssp EEEEEECCS-------CCCTHHHHHHHHHCCSCEEEEECCSCSSCCTTTCCHHHHHHCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEeCCc-------CccHHHHHHHHHhcCCCEEEEeCCCCCCCCccccchHHHhccccccchHHHHHHHHHcCCCeEE
Confidence 667776655 567666777777667777666552 2342 22 556677889999999999
Q ss_pred Ecch-----------------HHHHhhhcCCcCEEEEcc
Q 018280 234 IADS-----------------AAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 234 I~Ds-----------------a~~~~m~~~~vd~VivGA 255 (358)
+.-. .+-.-| ++.....+|.
T Consensus 147 v~G~~~d~~~~~~i~~w~raa~~~~~l--r~~rig~iG~ 183 (500)
T 4f2d_A 147 VTGHWQDKQAHERIGSWMRQAVSKQDT--RHLKVCRFGD 183 (500)
T ss_dssp EESCTTCHHHHHHHHHHHHHHHHHHHH--TTCEEEEESC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHh--cCCeEEEECC
Confidence 8631 112224 6777778886
No 202
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=23.68 E-value=46 Score=28.48 Aligned_cols=101 Identities=11% Similarity=-0.071 Sum_probs=54.4
Q ss_pred CCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch---HHHHhhhcCCcCEEEEc
Q 018280 178 TGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVG 254 (358)
Q Consensus 178 sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivG 254 (358)
||+.++ | -+..+++.+.+.|...+|+++++.-.+=.. .+-..|. | +| ..|. .+.++=-.+..|.+++.
T Consensus 13 TGs~aa--~-k~~~ll~~L~~~g~~V~vv~T~~A~~fi~~-~~l~~l~--~-~v--~~~~~~~~~~hi~l~~~aD~~vVa 83 (175)
T 3qjg_A 13 CGSVNS--I-NISHYIIELKSKFDEVNVIASTNGRKFING-EILKQFC--D-NY--YDEFEDPFLNHVDIANKHDKIIIL 83 (175)
T ss_dssp CSSGGG--G-GHHHHHHHHTTTCSEEEEEECTGGGGGSCH-HHHHHHC--S-CE--ECTTTCTTCCHHHHHHTCSEEEEE
T ss_pred eCHHHH--H-HHHHHHHHHHHCCCEEEEEECcCHHHHhhH-HHHHHhc--C-CE--EecCCCCccccccccchhCEEEEe
Confidence 566543 2 256678888888889999998876443222 2223343 3 43 3332 11111111578988876
Q ss_pred ceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 255 ADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 255 Ad~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
--..-.=+.++|-+.--.+..++...++|++++
T Consensus 84 PaTanTlakiA~GiaDnLlt~~~la~~~pvvl~ 116 (175)
T 3qjg_A 84 PATSNTINKIANGICDNLLLTICHTAFEKLSIF 116 (175)
T ss_dssp EECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEE
T ss_pred eCCHHHHHHHHccccCCHHHHHHHHcCCCEEEE
Confidence 322211123334444444544566679999887
No 203
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=23.66 E-value=3.6e+02 Score=25.01 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=40.8
Q ss_pred eEEEEecCCCCCcchHHHHHH-HHhCCCCeEEEcch--HHHHhhhcCCcCEEEEcceee-ecCCceecccccHHHHHHHH
Q 018280 203 ERAYCSETRPFNQGSRLTAFE-LVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRV-AANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~e-L~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGAd~i-~~nG~v~nkiGT~~lA~~Ak 278 (358)
-+|++.+ |.+.+....... +...|+++..++-. .+-..+. ++..+|++ ..+ -..|.+.. --.++-+|+
T Consensus 96 d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~-~~~~~v~~--~~~~n~~G~~~~---l~~i~~l~~ 167 (412)
T 2cb1_A 96 DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALS-AKTRAVFV--ETVANPALLVPD---LEALATLAE 167 (412)
T ss_dssp CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCC-TTEEEEEE--ESSCTTTCCCCC---HHHHHHHHH
T ss_pred CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhc-cCCeEEEE--eCCCCCCccccc---HHHHHHHHH
Confidence 3566654 555442211111 45679998888632 2223331 34545544 222 22344432 345778899
Q ss_pred hcCCeEEE
Q 018280 279 FHNILFYV 286 (358)
Q Consensus 279 ~~~iPvyV 286 (358)
+||+++++
T Consensus 168 ~~~~~li~ 175 (412)
T 2cb1_A 168 EAGVALVV 175 (412)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99999887
No 204
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=23.63 E-value=1.6e+02 Score=25.29 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=52.0
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
....+|.++|..|.... .....|...|+.|....|..-+ ..+++..+|.||+..+ +++++ |--.+..+-+
T Consensus 21 ~~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~-----g~~~~~~lr~ 91 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVE--LLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMD-----GFGVLRRLRA 91 (250)
T ss_dssp CSSCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSC-----HHHHHHHHHH
T ss_pred CCCceEEEEECCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCC-----HHHHHHHHHh
Confidence 34678999998877532 2355688899998877666544 2345567999998643 33322 3333333333
Q ss_pred h-cCCeEEEeccCc
Q 018280 279 F-HNILFYVAAPLT 291 (358)
Q Consensus 279 ~-~~iPvyV~a~~~ 291 (358)
. .++|+++++...
T Consensus 92 ~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 92 DGIDAPALFLTARD 105 (250)
T ss_dssp TTCCCCEEEEECST
T ss_pred cCCCCCEEEEECCC
Confidence 3 479999987644
No 205
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=23.61 E-value=1.1e+02 Score=22.59 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=25.9
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCe
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPA 231 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~v 231 (358)
.+..|+.||.+|. ....+...+.+.|- .|++.+. | +.+| .+.|.|+
T Consensus 55 ~~~~iv~yC~~g~-------rs~~a~~~L~~~G~--~v~~l~G-----G--~~~W--~~~g~p~ 100 (103)
T 3eme_A 55 KNEIYYIVCAGGV-------RSAKVVEYLEANGI--DAVNVEG-----G--MHAW--GDEGLEI 100 (103)
T ss_dssp TTSEEEEECSSSS-------HHHHHHHHHHTTTC--EEEEETT-----H--HHHH--CSSSCBC
T ss_pred CCCeEEEECCCCh-------HHHHHHHHHHHCCC--CeEEeCC-----C--HHHH--HHCCCcC
Confidence 4578999998863 22223344444564 6776652 3 3455 4566654
No 206
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.58 E-value=2.2e+02 Score=20.94 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=36.4
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcce
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGAD 256 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd 256 (358)
...+|.++|..|.... .....|.+.|..+....+..-+ ..+++.+.|.||+..+
T Consensus 5 ~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAMAA--AIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC
T ss_pred CCccEEEEECCHHHHH--HHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC
Confidence 3467888888776532 2355688889988877665444 3455678999998754
No 207
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=23.58 E-value=5.5e+02 Score=25.50 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=63.2
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCC---------CC-----cc--
Q 018280 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRP---------FN-----QG-- 216 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP---------~~-----qG-- 216 (358)
++..+.+.|. +..||..+ +|.| | -.+++.+...|.. ++.+.+... .+ -|
T Consensus 22 ~G~~~q~~L~------~~~VlvvG-~GGl-----G--seiak~La~aGVg-~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~ 86 (531)
T 1tt5_A 22 WGDHGQEALE------SAHVCLIN-ATAT-----G--TEILKNLVLPGIG-SFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86 (531)
T ss_dssp HHHHHHHHHH------HCEEEEEC-CSHH-----H--HHHHHHHHTTTCS-EEEEECCCBBCHHHHHHCTTCCGGGBTSB
T ss_pred cCHHHHHHHh------cCeEEEEC-cCHH-----H--HHHHHHHHHcCCC-eEEEEeCCEechhhcccCccCChhhcCcH
Confidence 6777888887 35777765 3422 2 2355666666764 333333222 11 12
Q ss_pred -hHHHHHHHHhC--CCCeEEEcchHH------HHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 217 -SRLTAFELVHD--RIPATLIADSAA------AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 217 -~rlta~eL~~~--GI~vtlI~Dsa~------~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+...+..|.+. +++++.++..-- ..++ .+.|.||.+.|..- --+.+.-.|+.+++||+.+
T Consensus 87 Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~--~~~DvVi~~~d~~~---------~r~~ln~~c~~~~iplI~~ 155 (531)
T 1tt5_A 87 RAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFF--CRFTVVVATQLPES---------TSLRLADVLWNSQIPLLIC 155 (531)
T ss_dssp HHHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGG--GGCSEEEEESCCHH---------HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHh--cCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 22234556665 477777764322 1345 67899988866542 2345667899999999876
No 208
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.47 E-value=2.3e+02 Score=21.15 Aligned_cols=84 Identities=7% Similarity=0.011 Sum_probs=51.5
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHHhCCC--CeEEEcchHHH-Hhhhc-----CCcCEEEEcceeeecCCceeccccc
Q 018280 199 EGVLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD-----GRVSAVIVGADRVAANGDTANKIGT 270 (358)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI--~vtlI~Dsa~~-~~m~~-----~~vd~VivGAd~i~~nG~v~nkiGT 270 (358)
.++..+|.++|..|.... .....|.+.|. .|....+..-+ ..+++ ..+|.||+..+ +.++ -|-
T Consensus 6 ~~~~~~iLivdd~~~~~~--~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~ 76 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIVNF--LNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGW 76 (146)
T ss_dssp -CCEEEEEEECSCHHHHH--HHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHH
T ss_pred cCccceEEEEeCCHHHHH--HHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHH
Confidence 356788999998876532 23556888888 67766665444 34445 77999998654 2222 232
Q ss_pred HHHHHHHH-----hcCCeEEEeccCc
Q 018280 271 YSLALCAK-----FHNILFYVAAPLT 291 (358)
Q Consensus 271 ~~lA~~Ak-----~~~iPvyV~a~~~ 291 (358)
-.+..+-+ ...+|+++++...
T Consensus 77 ~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 77 ELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred HHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 33333333 3589999886544
No 209
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=23.45 E-value=99 Score=26.60 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHH--H--Hh----CCCCeEEEcchHHHHhhhc---CCcCEEEEccee
Q 018280 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFE--L--VH----DRIPATLIADSAAAALMKD---GRVSAVIVGADR 257 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~e--L--~~----~GI~vtlI~Dsa~~~~m~~---~~vd~VivGAd~ 257 (358)
+..+++.+.+.|...+|+++++ +.+....| + .. .|-+..+-.+..+.++-.. +..|.+++.--.
T Consensus 17 ~~~l~~~L~~~g~~V~vv~T~~-----A~~~i~~e~~~~~~~l~~~l~~~~v~~~~~~~~hi~~~s~~~~aD~mvIaPaT 91 (189)
T 2ejb_A 17 GIKLLQVLEELDFSVDLVISRN-----AKVVLKEEHSLTFEEVLKGLKNVRIHEENDFTSPLASGSRLVHYRGVYVVPCS 91 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEECHH-----HHHHHHHC-------CCCCCSSEEEEETTCTTSGGGCHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEChh-----HHHHhhHHhCCCHHHHHHHhCCCeEecCCCCcCCccccccccccCEEEEecCC
Confidence 3456788887888899998876 22332221 1 11 1212222222222222211 678977776322
Q ss_pred eecCCceecccccHHHHHHHHhc---CCeEEEe
Q 018280 258 VAANGDTANKIGTYSLALCAKFH---NILFYVA 287 (358)
Q Consensus 258 i~~nG~v~nkiGT~~lA~~Ak~~---~iPvyV~ 287 (358)
.-.=+.++|-+.--.+..+|... ++|++++
T Consensus 92 anTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~ 124 (189)
T 2ejb_A 92 TNTLSCIANGINKNLIHRVGEVALKERVPLVLL 124 (189)
T ss_dssp HHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEE
Confidence 21112334444444555555555 8999876
No 210
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=23.45 E-value=1.7e+02 Score=30.61 Aligned_cols=86 Identities=5% Similarity=0.013 Sum_probs=53.9
Q ss_pred EEEEecCCC-CC-----cchHHHHHHHHhCCCCeEEEcchHHHHhhhcC--CcCEEEEcceeeecCCceecccccHHHHH
Q 018280 204 RAYCSETRP-FN-----QGSRLTAFELVHDRIPATLIADSAAAALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL 275 (358)
Q Consensus 204 ~V~v~EsrP-~~-----qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~--~vd~VivGAd~i~~nG~v~nkiGT~~lA~ 275 (358)
+|.++|..+ .. .+.+..+..|.+.|..|....|..-+..+.+. ++|+||+--+- ++ .-.+.-|-..+..
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~l--p~-~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQM--EH-PDEHQNVRQLIGK 78 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCC--CS-HHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCC--Cc-ccccccHHHHHHH
Confidence 577777777 43 23455577899999999999988777554433 48999987442 22 1111223333333
Q ss_pred HHHh-cCCeEEEeccCcc
Q 018280 276 CAKF-HNILFYVAAPLTS 292 (358)
Q Consensus 276 ~Ak~-~~iPvyV~a~~~k 292 (358)
+-+. .++|+++++....
T Consensus 79 iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHSTTCCEEEEECHHH
T ss_pred HHHhCCCCCEEEEecCCc
Confidence 3333 4799999987654
No 211
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=23.40 E-value=1.8e+02 Score=24.16 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=45.1
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhc-C
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH-N 281 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~-~ 281 (358)
+|.++|..|.... .+ ...|.+.|+.|....+..-+ ..+++..+|.|+ +++. -|--.+..+-+.. +
T Consensus 2 ~ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------lp~~-----~g~~~~~~lr~~~~~ 68 (223)
T 2hqr_A 2 RVLLIEKNSVLGG-EI-EKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEKHSS 68 (223)
T ss_dssp CEEEECSCHHHHH-HH-HHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCT-----THHHHHHHHHHHCTT
T ss_pred EEEEEcCCHHHHH-HH-HHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE------eCCC-----CHHHHHHHHHhCCCC
Confidence 4677777776532 13 45678889998866665433 344556789988 3332 2333333333335 8
Q ss_pred CeEEEeccCc
Q 018280 282 ILFYVAAPLT 291 (358)
Q Consensus 282 iPvyV~a~~~ 291 (358)
+|+++++...
T Consensus 69 ~~ii~lt~~~ 78 (223)
T 2hqr_A 69 IVVLVSSDNP 78 (223)
T ss_dssp SEEEEEESSC
T ss_pred CcEEEEECCC
Confidence 9999987653
No 212
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=23.39 E-value=5.6e+02 Score=25.47 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=21.7
Q ss_pred HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+..++++.++|+++-|. .-.-+|+..|||++-.
T Consensus 448 l~~~i~~~~pDl~ig~~----------------~~~~~a~k~gIP~~~~ 480 (533)
T 1mio_A 448 MEVVLEKLKPDMFFAGI----------------KEKFVIQKGGVLSKQL 480 (533)
T ss_dssp HHHHHHHHCCSEEEECH----------------HHHHHHHHTTCEEEET
T ss_pred HHHHHHhcCCCEEEccc----------------chhHHHHhcCCCEEEe
Confidence 44455556788776442 2356788999999843
No 213
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.34 E-value=2.2e+02 Score=23.28 Aligned_cols=32 Identities=6% Similarity=-0.092 Sum_probs=23.7
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (358)
++.+++.|+++..|+++.-+.+- +.+|.++.-
T Consensus 99 ~~~ak~~g~~vi~IT~~~~s~l~--~~ad~~l~~ 130 (186)
T 1m3s_A 99 AAKAKSLHGIVAALTINPESSIG--KQADLIIRM 130 (186)
T ss_dssp HHHHHHTTCEEEEEESCTTSHHH--HHCSEEEEC
T ss_pred HHHHHHCCCEEEEEECCCCCchH--HhCCEEEEe
Confidence 56678899999999987655555 567776643
No 214
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=23.16 E-value=2e+02 Score=20.67 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=46.0
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-hcC
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FHN 281 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-~~~ 281 (358)
+|.+.|..|.... .+ ...|.+.|+.+....+..-+ ..+++.+.|.|++..+- ++. -|.-.+..+-+ ..+
T Consensus 3 ~ilivdd~~~~~~-~l-~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (116)
T 3a10_A 3 RILVVDDEPNIRE-LL-KEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEM--PGI-----SGLEVAGEIRKKKKD 73 (116)
T ss_dssp EEEEECSCHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSS-----CHHHHHHHHHHHCTT
T ss_pred EEEEEeCCHHHHH-HH-HHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCC--CCC-----CHHHHHHHHHccCCC
Confidence 5777777766532 23 45678889988866654333 23445678999987642 221 23333333333 347
Q ss_pred CeEEEeccC
Q 018280 282 ILFYVAAPL 290 (358)
Q Consensus 282 iPvyV~a~~ 290 (358)
+|+++++..
T Consensus 74 ~~ii~~s~~ 82 (116)
T 3a10_A 74 AKIILLTAY 82 (116)
T ss_dssp CCEEEEESC
T ss_pred CeEEEEECC
Confidence 899988654
No 215
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=23.16 E-value=86 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=34.6
Q ss_pred HHhCCCCeEEEcch-------HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEecc
Q 018280 224 LVHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (358)
Q Consensus 224 L~~~GI~vtlI~Ds-------a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~ 289 (358)
+.+.|+.+...... ++..+. +++|.+++..|... ++. ...+...++++++|+|...+
T Consensus 165 ~~~~g~~~v~~~~~~~~~~~~~~~~l~--~~~d~i~~~~d~~~-----~~~--~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 165 AAKHGIKLVEATALKSADVQSATQAIA--EKSDVIYALIDNTV-----ASA--IEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHHTTCEEEEEECSSGGGHHHHHHHHH--TTCSEEEECSCHHH-----HHT--HHHHHHHHHHTTCCEEESSH
T ss_pred HHHcCCEEEEEecCChHHHHHHHHhcc--CCeeEEEEeCCcch-----hhH--HHHHHHHHhhcCCceeeccc
Confidence 45667765544321 122333 78999987765433 222 24456788999999998644
No 216
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=23.01 E-value=3.2e+02 Score=22.54 Aligned_cols=32 Identities=3% Similarity=-0.067 Sum_probs=23.8
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCC---cCEEEEc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGR---VSAVIVG 254 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~---vd~VivG 254 (358)
++.+++.|+++..|+++.-+.+- +. +|.++.-
T Consensus 133 ~~~ak~~g~~vI~IT~~~~s~La--~~~~~ad~~l~~ 167 (199)
T 1x92_A 133 IQAAHDREMLVVALTGRDGGGMA--SLLLPEDVEIRV 167 (199)
T ss_dssp HHHHHHTTCEEEEEECTTCHHHH--HHCCTTCEEEEC
T ss_pred HHHHHHCCCEEEEEECCCCCcHH--hccccCCEEEEe
Confidence 56678899999999987665555 44 7877654
No 217
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.95 E-value=1.3e+02 Score=24.60 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
+..+.....+.+ +||+.=..--.--+...+..|...|+++..+.|. ....+ .+=|.||+ +...|..-.
T Consensus 30 i~~~~~~i~~a~---~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~~~~~--~~~d~vi~----iS~sG~t~~-- 97 (180)
T 1jeo_A 30 LDSLIDRIIKAK---KIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET-TTPSY--EKDDLLIL----ISGSGRTES-- 97 (180)
T ss_dssp HHHHHHHHHHCS---SEEEECCHHHHHHHHHHHHHHHHTTCCEEETTST-TCCCC--CTTCEEEE----EESSSCCHH--
T ss_pred HHHHHHHHHhCC---EEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC-ccccC--CCCCEEEE----EeCCCCcHH--
Q ss_pred ccHHHHHHHHhcCCeEEEeccCcc
Q 018280 269 GTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 269 GT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
+..++-.||..|+|++.++....
T Consensus 98 -~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 98 -VLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp -HHHHHHHHHTTCSCEEEEESSCC
T ss_pred -HHHHHHHHHHCCCcEEEEeCCCC
No 218
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=22.95 E-value=90 Score=26.66 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=38.5
Q ss_pred HHHHHHHH-HHCCC---eeEEEEecCCCCCcchHHHHHHHHh-C-CCCeEEEcchH--HHHhhhcCCcCEEEEc
Q 018280 189 ALGVIRAL-HSEGV---LERAYCSETRPFNQGSRLTAFELVH-D-RIPATLIADSA--AAALMKDGRVSAVIVG 254 (358)
Q Consensus 189 a~~~l~~a-~~~g~---~~~V~v~EsrP~~qG~rlta~eL~~-~-GI~vtlI~Dsa--~~~~m~~~~vd~VivG 254 (358)
|...|..| +..|. .+++.+..+....+-+...+..|.+ . ||++++..-.. ....++.++.|+++.|
T Consensus 83 Ak~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~~~~~~~~~~~~g~~d~~~~~ 156 (229)
T 3o6p_A 83 AKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGG 156 (229)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEecCHHHHHHHhhcCCceEEEec
Confidence 44566665 34453 5666654432222233445667999 8 99998865322 2233556889988876
No 219
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.93 E-value=2.1e+02 Score=23.32 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=25.3
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEcc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGA 255 (358)
++.+++.|+++..|+++.-+.+- +.+|.++.-.
T Consensus 116 ~~~ak~~g~~vi~IT~~~~s~la--~~ad~~l~~~ 148 (183)
T 2xhz_A 116 IPVLKRLHVPLICITGRPESSMA--RAADVHLCVK 148 (183)
T ss_dssp HHHHHTTTCCEEEEESCTTSHHH--HHSSEEEECC
T ss_pred HHHHHHCCCCEEEEECCCCChhH--HhCCEEEEeC
Confidence 55678899999999998766666 6678776543
No 220
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.83 E-value=1.8e+02 Score=21.79 Aligned_cols=79 Identities=10% Similarity=0.007 Sum_probs=47.0
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH-hc
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak-~~ 280 (358)
.+|.+.|..|.... .+ ...|...|+.+....+..-+ ..+.+...|.|++..+- .+. -|--.+..+.+ ..
T Consensus 4 ~~Ilivdd~~~~~~-~l-~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 4 KRILIVDDDTAILD-ST-KQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKL--PDM-----EGTELLEKAHKLRP 74 (132)
T ss_dssp CEEEEECSCHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBC--SSS-----BHHHHHHHHHHHCT
T ss_pred cEEEEEeCCHHHHH-HH-HHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----chHHHHHHHHhhCC
Confidence 46888887776532 23 44577889988866654333 33445678999987542 221 23323333333 34
Q ss_pred CCeEEEeccC
Q 018280 281 NILFYVAAPL 290 (358)
Q Consensus 281 ~iPvyV~a~~ 290 (358)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (132)
T 3crn_A 75 GMKKIMVTGY 84 (132)
T ss_dssp TSEEEEEESC
T ss_pred CCcEEEEecc
Confidence 7999988654
No 221
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=22.76 E-value=1.2e+02 Score=28.12 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=30.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc
Q 018280 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (358)
Q Consensus 170 ~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D 236 (358)
++||-.+..+. +.....+.+.+.+.++|....|+.. +. ...+...|+++..+..
T Consensus 21 MrIl~~~~~~~---Ghv~~~~~La~~L~~~GheV~v~~~---~~-------~~~~~~~G~~~~~~~~ 74 (398)
T 3oti_A 21 MRVLFVSSPGI---GHLFPLIQLAWGFRTAGHDVLIAVA---EH-------ADRAAAAGLEVVDVAP 74 (398)
T ss_dssp CEEEEECCSSH---HHHGGGHHHHHHHHHTTCEEEEEES---SC-------HHHHHTTTCEEEESST
T ss_pred CEEEEEcCCCc---chHhHHHHHHHHHHHCCCEEEEecc---ch-------HHHHHhCCCeeEecCC
Confidence 56776654321 1112234556777778877777654 21 1235667888777663
No 222
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=22.45 E-value=1.2e+02 Score=25.72 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=48.8
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcC
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (358)
.+|.++|..|...- .....|...|+.|....+..-+ ..+++.++|.|++..+- ++. -|--.+..+-+..+
T Consensus 6 ~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l--~~~-----~g~~~~~~lr~~~~ 76 (238)
T 2gwr_A 6 QRILVVDDDASLAE--MLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGM-----NGIDVCRVLRADSG 76 (238)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHTTCC
T ss_pred CeEEEEeCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhCCC
Confidence 57888888776532 2245677889888776654433 33445678999886532 221 23333444444458
Q ss_pred CeEEEeccCc
Q 018280 282 ILFYVAAPLT 291 (358)
Q Consensus 282 iPvyV~a~~~ 291 (358)
+|+++++...
T Consensus 77 ~~ii~lt~~~ 86 (238)
T 2gwr_A 77 VPIVMLTAKT 86 (238)
T ss_dssp CCEEEEEETT
T ss_pred CcEEEEeCCC
Confidence 9999986543
No 223
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=22.41 E-value=2e+02 Score=21.62 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=46.5
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh--
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (358)
.+|.++|..|.... .....|...|+.+....+..-+ ..+.+..+|.|++..+- ++. -|--.+..+-+.
T Consensus 4 ~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 4 YTILVVDDSPMIVD--VFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMM--EPM-----DGWETLERIKTDPA 74 (138)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHHSTT
T ss_pred ceEEEEeCCHHHHH--HHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCC--CCC-----CHHHHHHHHHcCcc
Confidence 46788887776432 2245677889988866654333 34455678999986542 222 133233333332
Q ss_pred -cCCeEEEeccC
Q 018280 280 -HNILFYVAAPL 290 (358)
Q Consensus 280 -~~iPvyV~a~~ 290 (358)
.++|+++++..
T Consensus 75 ~~~~~ii~ls~~ 86 (138)
T 3c3m_A 75 TRDIPVLMLTAK 86 (138)
T ss_dssp TTTSCEEEEESS
T ss_pred cCCCCEEEEECC
Confidence 36899988654
No 224
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=22.41 E-value=2.4e+02 Score=24.59 Aligned_cols=109 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCC----CCcch---HHHHHHHHhCCCCeEEEcchHHHHhhh-
Q 018280 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRP----FNQGS---RLTAFELVHDRIPATLIADSAAAALMK- 244 (358)
Q Consensus 173 LT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP----~~qG~---rlta~eL~~~GI~vtlI~Dsa~~~~m~- 244 (358)
+..+=||+.|+ |..+..+++.+.+.|-..+|+++++.- .+... .++-..|....+ +.|-.-..-..
T Consensus 8 IllgiTGsiaa--yk~~~~ll~~L~~~g~eV~vv~T~~A~~vl~~f~~~~~~~~~l~~ltg~~v----~~~~~~~~hi~l 81 (207)
T 3mcu_A 8 IGFGFTGSHCT--YEEVMPHLEKLIAEGAEVRPVVSYTVQSTNTRFGEGAEWIKKIEEITGFKA----INSIVGAEPLGP 81 (207)
T ss_dssp EEEEECSCGGG--GTTSHHHHHHHHHTTCEEEEEECC------------CHHHHHHHHHSSSCC----BCSHHHHGGGTT
T ss_pred EEEEEEChHHH--HHHHHHHHHHHHhCCCEEEEEEehHHHHHHHHhcCchhHHHHHHHHhCCce----EeecCccccccc
Q ss_pred cCCcCEEEEcceeeecCCceecccccHHHHH---HHHhcCCeEEEe
Q 018280 245 DGRVSAVIVGADRVAANGDTANKIGTYSLAL---CAKFHNILFYVA 287 (358)
Q Consensus 245 ~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~---~Ak~~~iPvyV~ 287 (358)
.+..|.++|.--..-.=+.++|-+.--.+.. .+=..+.|++++
T Consensus 82 s~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvla 127 (207)
T 3mcu_A 82 KIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLA 127 (207)
T ss_dssp TSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEE
T ss_pred chhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEE
No 225
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=22.40 E-value=2.2e+02 Score=25.71 Aligned_cols=82 Identities=7% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEc-c-hHHHHhhhcCCcCEEEEcceeeecCCceecccc
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-D-SAAAALMKDGRVSAVIVGADRVAANGDTANKIG 269 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~-D-sa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiG 269 (358)
+++.+.+.| -+|++.+ |.+.|... .+...|.++..++ | ..+-..+. +++..|++ ..---+.|.+...-
T Consensus 105 ~~~~~~~~g--d~vl~~~--p~~~~~~~---~~~~~g~~~~~v~~d~~~l~~~l~-~~~~~v~~-~~p~nptG~~~~~~- 174 (370)
T 2z61_A 105 ALSSIIDDG--DEVLIQN--PCYPCYKN---FIRFLGAKPVFCDFTVESLEEALS-DKTKAIII-NSPSNPLGEVIDRE- 174 (370)
T ss_dssp HHHHHCCTT--CEEEEES--SCCTHHHH---HHHHTTCEEEEECSSHHHHHHHCC-SSEEEEEE-ESSCTTTCCCCCHH-
T ss_pred HHHHhcCCC--CEEEEeC--CCchhHHH---HHHHcCCEEEEeCCCHHHHHHhcc-cCceEEEE-cCCCCCcCcccCHH-
Confidence 344443334 3565553 55656432 3456788887775 2 22223342 34555554 21112346555544
Q ss_pred cHHHHHHHHhcCCeEEE
Q 018280 270 TYSLALCAKFHNILFYV 286 (358)
Q Consensus 270 T~~lA~~Ak~~~iPvyV 286 (358)
++-+|++||+++++
T Consensus 175 ---l~~~~~~~~~~li~ 188 (370)
T 2z61_A 175 ---IYEFAYENIPYIIS 188 (370)
T ss_dssp ---HHHHHHHHCSEEEE
T ss_pred ---HHHHHHHcCCEEEE
Confidence 78889999998876
No 226
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=22.35 E-value=3e+02 Score=23.00 Aligned_cols=106 Identities=14% Similarity=0.043 Sum_probs=58.7
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cc-hHHHHhhhc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKD 245 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~D-sa~~~~m~~ 245 (358)
+.+||..+-+|.+ | ..+.+.+.++|...+|++...+|. ++ .++ ..++.+... .| ..+..++
T Consensus 4 ~~~ilVtGasG~i-----G--~~l~~~l~~~~~g~~V~~~~r~~~----~~--~~~-~~~~~~~~~D~~d~~~~~~~~-- 67 (253)
T 1xq6_A 4 LPTVLVTGASGRT-----G--QIVYKKLKEGSDKFVAKGLVRSAQ----GK--EKI-GGEADVFIGDITDADSINPAF-- 67 (253)
T ss_dssp CCEEEEESTTSHH-----H--HHHHHHHHHTTTTCEEEEEESCHH----HH--HHT-TCCTTEEECCTTSHHHHHHHH--
T ss_pred CCEEEEEcCCcHH-----H--HHHHHHHHhcCCCcEEEEEEcCCC----ch--hhc-CCCeeEEEecCCCHHHHHHHH--
Confidence 4566665544322 2 335566666643467777654431 11 223 334433221 22 4566677
Q ss_pred CCcCEEEEcceeeecC-----------Cc----------eecccccHHHHHHHHhcCCeEEEeccC
Q 018280 246 GRVSAVIVGADRVAAN-----------GD----------TANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 246 ~~vd~VivGAd~i~~n-----------G~----------v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
.++|.||--|-..... -. -+|-.|+..+.-+|+.++++-+|...+
T Consensus 68 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 68 QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp TTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7899988766432111 00 257789999999999988875554433
No 227
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=22.30 E-value=3.4e+02 Score=25.04 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCeeEEEEec-CCCCCcchHH----HHHHHHhCCCCeEEE---cchHHHHhhhcCCcCEEEEcce-eee
Q 018280 189 ALGVIRALHSEGVLERAYCSE-TRPFNQGSRL----TAFELVHDRIPATLI---ADSAAAALMKDGRVSAVIVGAD-RVA 259 (358)
Q Consensus 189 a~~~l~~a~~~g~~~~V~v~E-srP~~qG~rl----ta~eL~~~GI~vtlI---~Dsa~~~~m~~~~vd~VivGAd-~i~ 259 (358)
+...|+.+.+.|..+..+++. .+|...|.++ ......+.|||+..- .|...-..++..++|.+++-+= .|+
T Consensus 15 a~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~il 94 (314)
T 1fmt_A 15 AARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLIL 94 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEESCCSCC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEeeccccC
Confidence 344566666666443333332 2444333322 122345789998432 1455666677789999888664 444
No 228
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=22.25 E-value=33 Score=30.35 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=28.6
Q ss_pred CcCEEEEcceeeecCC--------ceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 247 RVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 247 ~vd~VivGAd~i~~nG--------~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
++|.||--|-....+. --.|-.||..+.-+|+.++++|+.+...
T Consensus 56 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~ 107 (287)
T 3sc6_A 56 RPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTD 107 (287)
T ss_dssp CCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred CCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchh
Confidence 5777765553322111 1257789999999999999986665443
No 229
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.15 E-value=1.2e+02 Score=23.79 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=49.1
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeE-EEcchHHH-HhhhcC--CcCEEEEcceeeecCCceecccccHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSAAA-ALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL 275 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vt-lI~Dsa~~-~~m~~~--~vd~VivGAd~i~~nG~v~nkiGT~~lA~ 275 (358)
+...+|.++|..|...- .....|.+.|+.+. ...+..-+ ..+++. ++|.||+..+- .++ -|--.+..
T Consensus 34 ~~~~~Ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~~-----~g~~~~~~ 104 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVK--QLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PKM-----DGITCLSN 104 (157)
T ss_dssp TEECEEEEECSCHHHHH--HHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SSS-----CHHHHHHH
T ss_pred CCceEEEEEeCCHHHHH--HHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CCc-----cHHHHHHH
Confidence 45689999998876532 23556888999887 44444332 234444 78999987643 221 12222322
Q ss_pred HH-HhcCCeEEEeccC
Q 018280 276 CA-KFHNILFYVAAPL 290 (358)
Q Consensus 276 ~A-k~~~iPvyV~a~~ 290 (358)
+- +..++|+++++..
T Consensus 105 lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 105 IMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHCTTCCEEEEESC
T ss_pred HHhhCCCCcEEEEecc
Confidence 32 2357999988654
No 230
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.15 E-value=2.1e+02 Score=21.42 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=48.7
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-Hhhhc-CCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
....+|.++|..|...- .....|.+.|+.+....+..-+ ..+++ ...|.|++..+- .+. -|--.+..+-
T Consensus 13 ~~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~~-----~g~~~~~~l~ 83 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHAT--LIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQL--VDL-----SIFSLLDIVK 83 (138)
T ss_dssp -CCCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTC--TTS-----CHHHHHHHHT
T ss_pred CCCCeEEEECCCHHHHH--HHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCC--CCC-----CHHHHHHHHH
Confidence 44567888888776432 2355688889988877765443 34555 679999886532 221 1222222222
Q ss_pred H-hcCCeEEEec-cC
Q 018280 278 K-FHNILFYVAA-PL 290 (358)
Q Consensus 278 k-~~~iPvyV~a-~~ 290 (358)
+ ..++|+++++ ..
T Consensus 84 ~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 84 EQTKQPSVLILTTGR 98 (138)
T ss_dssp TSSSCCEEEEEESCC
T ss_pred hhCCCCCEEEEECCC
Confidence 2 2479999987 44
No 231
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=22.08 E-value=1.9e+02 Score=21.86 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=48.1
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHH-hhh--cCCcCEEEEcceeeecCCceecccccHHHHHHHH-
Q 018280 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMK--DGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (358)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~-~m~--~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (358)
.+|.++|..|.... .....|.+.|..+....+..-+. .++ +..+|.||+..+- .++ -|.-.+..+-+
T Consensus 4 ~~ilivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~ 74 (143)
T 3jte_A 4 AKILVIDDESTILQ--NIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKL-----SGMDILREIKKI 74 (143)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSS-----CHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHH--HHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCC-----cHHHHHHHHHHh
Confidence 57788887766432 23556888898888776654443 333 4689999987643 222 23233333333
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
..++|+++++...
T Consensus 75 ~~~~~ii~ls~~~ 87 (143)
T 3jte_A 75 TPHMAVIILTGHG 87 (143)
T ss_dssp CTTCEEEEEECTT
T ss_pred CCCCeEEEEECCC
Confidence 3479999987644
No 232
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=22.08 E-value=1.7e+02 Score=26.14 Aligned_cols=91 Identities=15% Similarity=0.014 Sum_probs=48.9
Q ss_pred HHHHHHHCCCeeEEEEecC--CCCCcchHHHHHHHHhCC-CCeEEEcc----hHHHHhhhcCCcCEEEEcceeeecC---
Q 018280 192 VIRALHSEGVLERAYCSET--RPFNQGSRLTAFELVHDR-IPATLIAD----SAAAALMKDGRVSAVIVGADRVAAN--- 261 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~Es--rP~~qG~rlta~eL~~~G-I~vtlI~D----sa~~~~m~~~~vd~VivGAd~i~~n--- 261 (358)
+.+.+.++|. +|+++.. |+..+ .....|...| +.+ +..| ..+..+++..++|.||--|-....+
T Consensus 17 l~~~L~~~g~--~V~~~~r~~~~~~~---~~~~~l~~~~~~~~-~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~ 90 (347)
T 1orr_A 17 LASFALSQGI--DLIVFDNLSRKGAT---DNLHWLSSLGNFEF-VHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSI 90 (347)
T ss_dssp HHHHHHHTTC--EEEEEECCCSTTHH---HHHHHHHTTCCCEE-EECCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHH
T ss_pred HHHHHHhCCC--EEEEEeCCCccCch---hhhhhhccCCceEE-EEcCCCCHHHHHHHHhccCCCEEEECCcccChhhhh
Confidence 4566666664 5666643 33221 1133455444 332 2233 3445566333489888766432110
Q ss_pred --C---ceecccccHHHHHHHHhcCCe--EEEec
Q 018280 262 --G---DTANKIGTYSLALCAKFHNIL--FYVAA 288 (358)
Q Consensus 262 --G---~v~nkiGT~~lA~~Ak~~~iP--vyV~a 288 (358)
- --+|-.||..+.-+|+.++++ |+.+.
T Consensus 91 ~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S 124 (347)
T 1orr_A 91 DNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124 (347)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 0 124778999999999999875 44443
No 233
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=22.07 E-value=1.4e+02 Score=28.80 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHCCCe---eEEEEecCCCC-C-----cchHHHHHHHHhCCCCeE-EEcchHHHHhhhcCCcCEEEEccee
Q 018280 188 TALGVIRALHSEGVL---ERAYCSETRPF-N-----QGSRLTAFELVHDRIPAT-LIADSAAAALMKDGRVSAVIVGADR 257 (358)
Q Consensus 188 ta~~~l~~a~~~g~~---~~V~v~EsrP~-~-----qG~rlta~eL~~~GI~vt-lI~Dsa~~~~m~~~~vd~VivGAd~ 257 (358)
.++..+..+++.|.. +.+|-.+|.|+ + +|.+.......+.|+|+. -+-|....-++. .-+|..=+||--
T Consensus 157 ~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d~~~~~~l~-~~vd~lkIgs~~ 235 (385)
T 3nvt_A 157 QVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVAL-DYVDVIQIGARN 235 (385)
T ss_dssp HHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCSGGGHHHHT-TTCSEEEECGGG
T ss_pred HHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHH-hhCCEEEECccc
Confidence 466677778887763 44555677777 3 345544444557899965 344554444443 349998888733
Q ss_pred eecCCceecccccHHHHHHHHhcCCeEEEeccC
Q 018280 258 VAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 258 i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
+ -| +.+--.+...|+||.+-.+.
T Consensus 236 ~------~n----~~LL~~~a~~gkPVilk~G~ 258 (385)
T 3nvt_A 236 M------QN----FELLKAAGRVDKPILLKRGL 258 (385)
T ss_dssp T------TC----HHHHHHHHTSSSCEEEECCT
T ss_pred c------cC----HHHHHHHHccCCcEEEecCC
Confidence 3 33 35555566789999987665
No 234
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.04 E-value=1.7e+02 Score=21.30 Aligned_cols=78 Identities=8% Similarity=0.042 Sum_probs=44.4
Q ss_pred EEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHh---
Q 018280 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF--- 279 (358)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~--- 279 (358)
+|.++|..|.... .+ ...|...|+.+....+..-+ ..+++...|.|++..+- ++. -|--.+..+-+.
T Consensus 3 ~ilivdd~~~~~~-~l-~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 3 KVLIVEDNELNMK-LF-HDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQL--PEI-----SGLEVTKWLKEDDDL 73 (124)
T ss_dssp EEEEECSCHHHHH-HH-HHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBC--SSS-----BHHHHHHHHHHSTTT
T ss_pred EEEEEcCCHHHHH-HH-HHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCC--CCC-----CHHHHHHHHHcCccc
Confidence 5777777766432 23 45677889988766654333 33445678999986532 322 132223333332
Q ss_pred cCCeEEEeccC
Q 018280 280 HNILFYVAAPL 290 (358)
Q Consensus 280 ~~iPvyV~a~~ 290 (358)
..+|+++++..
T Consensus 74 ~~~~ii~~s~~ 84 (124)
T 1mb3_A 74 AHIPVVAVTAF 84 (124)
T ss_dssp TTSCEEEEC--
T ss_pred cCCcEEEEECC
Confidence 36899998654
No 235
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=22.03 E-value=2.4e+02 Score=28.02 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=60.0
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccH-HHHH-HH---HHHCCC--eeEEEEecC-CCCCc-----------
Q 018280 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTA-LGVI-RA---LHSEGV--LERAYCSET-RPFNQ----------- 215 (358)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta-~~~l-~~---a~~~g~--~~~V~v~Es-rP~~q----------- 215 (358)
+.++++|+ +|++|..++.+|. |+..+ ...| +. .+..|. .+.++...+ .|...
T Consensus 18 eEAv~~Ik-----dGd~V~~~Gf~~~----G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~ 88 (514)
T 4eu9_A 18 ETASELIK-----HGDVVGTSGFTGA----GYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYF 88 (514)
T ss_dssp HHHHTTCC-----TTCEEEECCBTTB----SCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEE
T ss_pred HHHHHhCC-----CCCEEEECCCCCC----cCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEE
Confidence 34566788 9999999865432 33332 2333 22 222343 345554332 23322
Q ss_pred ------chHHHHHHHHhCC-CCeEEEcchHHHHhhhc---CCcCEEEEcceeeecCCcee-cccccHHHHHHH
Q 018280 216 ------GSRLTAFELVHDR-IPATLIADSAAAALMKD---GRVSAVIVGADRVAANGDTA-NKIGTYSLALCA 277 (358)
Q Consensus 216 ------G~rlta~eL~~~G-I~vtlI~Dsa~~~~m~~---~~vd~VivGAd~i~~nG~v~-nkiGT~~lA~~A 277 (358)
|.. .+++.+.| ++..-+.-+.++..+.. .++|..++-+-..-++|.+. .....+..+.+.
T Consensus 89 ~~~~~~~~~--~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~~~~~~ 159 (514)
T 4eu9_A 89 RSPFNTDAT--MRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLN 159 (514)
T ss_dssp EESCCCCHH--HHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTHHHHHH
T ss_pred EEecCCCHH--HHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchHHHHHH
Confidence 221 24566666 33333445566644322 47999999999999999874 223334444433
No 236
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=21.87 E-value=2.4e+02 Score=25.52 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch------------HHHHhhhcCCcCEEEEcceeee
Q 018280 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS------------AAAALMKDGRVSAVIVGADRVA 259 (358)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds------------a~~~~m~~~~vd~VivGAd~i~ 259 (358)
+++.+.+.| -+|++.+ |.+.+... .+...|.++..++-. .+-..+ .+..+|++- .--.
T Consensus 106 ~~~~~~~~g--d~vl~~~--~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~v~i~-~p~n 175 (391)
T 4dq6_A 106 LINELTKAN--DKIMIQE--PVYSPFNS---VVKNNNRELIISPLQKLENGNYIMDYEDIENKI--KDVKLFILC-NPHN 175 (391)
T ss_dssp HHHHHSCTT--CEEEECS--SCCTHHHH---HHHHTTCEEEECCCEECTTSCEECCHHHHHHHC--TTEEEEEEE-SSBT
T ss_pred HHHHhCCCC--CEEEEcC--CCCHHHHH---HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHh--hcCCEEEEE-CCCC
Confidence 344443333 3555543 66766533 345668776665421 233344 233333221 1111
Q ss_pred cCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 260 ANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 260 ~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+.|.+...----.++-+|++||+++++=
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~D 203 (391)
T 4dq6_A 176 PVGRVWTKDELKKLGDICLKHNVKIISD 203 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEee
Confidence 2233322222234566799999998873
No 237
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=21.79 E-value=2.7e+02 Score=27.76 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHH---CCC--eeEEEEe-cCC----------------
Q 018280 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHS---EGV--LERAYCS-ETR---------------- 211 (358)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~t-a~~-~l~~a~~---~g~--~~~V~v~-Esr---------------- 211 (358)
.++++|+ +|++|...+++|. |.-. +.. +.+.+.+ +|. +++++.. -..
T Consensus 10 EAv~~Ik-----dGdtV~~gGf~~~----G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~ 80 (506)
T 2nvv_A 10 EAAEFVH-----HNDNVGFSGFTPA----GNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFR 80 (506)
T ss_dssp HHHTTCC-----TTCEEEECCSSST----TCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEE
T ss_pred HHHhhCC-----CCCEEEECCCCCC----CCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEE
Confidence 4556787 9999999866422 2222 333 3344333 332 4555542 111
Q ss_pred -CCCcchHHHHHHHHhCC-CCeEEEcchHHHHhhhcC---CcCEEEEcceeeecCCceec
Q 018280 212 -PFNQGSRLTAFELVHDR-IPATLIADSAAAALMKDG---RVSAVIVGADRVAANGDTAN 266 (358)
Q Consensus 212 -P~~qG~rlta~eL~~~G-I~vtlI~Dsa~~~~m~~~---~vd~VivGAd~i~~nG~v~n 266 (358)
|+..|..+ +++.+.| ++..-+--+.+..++..+ ++|..++-|...-.+|.+.=
T Consensus 81 ~~~~~~~~~--r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~ 138 (506)
T 2nvv_A 81 TPYQSNKDL--RNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILP 138 (506)
T ss_dssp ESCCCCHHH--HHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEEC
T ss_pred eeeCCCHHH--HHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEE
Confidence 23333332 3455555 333333345556555432 68999999999989997644
No 238
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=21.72 E-value=1.6e+02 Score=24.18 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=49.6
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHHhCCCCeE-EEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vt-lI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
...+|.++|..|.... .....|...|+.+. ...+..-+ ..+++..+|.||+..+- ++. -|--.+..+-+
T Consensus 12 m~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~--p~~-----~g~~~~~~l~~ 82 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRM--DLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKM--PRR-----DGIDAASEIAS 82 (205)
T ss_dssp CCCEEEEECSSHHHHH--HHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHH--HHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCC--CCC-----ChHHHHHHHHh
Confidence 3468889988876532 22456788899887 55544333 33445679999886432 221 23333444445
Q ss_pred hcCCeEEEeccCc
Q 018280 279 FHNILFYVAAPLT 291 (358)
Q Consensus 279 ~~~iPvyV~a~~~ 291 (358)
.+..|+++++...
T Consensus 83 ~~~~pii~lt~~~ 95 (205)
T 1s8n_A 83 KRIAPIVVLTAFS 95 (205)
T ss_dssp TTCSCEEEEEEGG
T ss_pred cCCCCEEEEecCC
Confidence 5567999886543
No 239
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=21.68 E-value=1.1e+02 Score=28.15 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCC-CCCcchHHHHHHHHhCCCCeEEEc---------chHHHHhhhcCCcCEEE
Q 018280 185 GYGTALGVIRALHSEGV-LERAY-CSETR-PFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVI 252 (358)
Q Consensus 185 g~~ta~~~l~~a~~~g~-~~~V~-v~Esr-P~~qG~rlta~eL~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Vi 252 (358)
|.|+-+.-|..+++.|. ..+|. |.=.+ |...+ + ..+.|||+..++ |..+...+++.++|+++
T Consensus 98 g~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 171 (288)
T 3obi_A 98 QSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFS--G----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVV 171 (288)
T ss_dssp SCCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGSC--C----TTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHHH--H----HHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEE
Confidence 45777776666666664 23333 23334 33221 1 247899999986 34455677778999998
Q ss_pred Ecce-eeec
Q 018280 253 VGAD-RVAA 260 (358)
Q Consensus 253 vGAd-~i~~ 260 (358)
+..= +|++
T Consensus 172 lagy~~il~ 180 (288)
T 3obi_A 172 LARYMQILS 180 (288)
T ss_dssp ESSCCSCCC
T ss_pred hhhhhhhCC
Confidence 8654 4543
No 240
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=21.63 E-value=4.5e+02 Score=24.03 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=58.7
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEE--Ecc-hHHHHhhhc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL--IAD-SAAAALMKD 245 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtl--I~D-sa~~~~m~~ 245 (358)
...|+..+-+|.+ |..+ ...+.++|...+|.+.+-.+. +|. +.+|.+...+..+ +.+ ......+
T Consensus 8 ~mKI~ViGAaG~V-----G~~l--a~~L~~~g~~~ev~l~Di~~~-~~~---~~dL~~~~~~~~v~~~~~t~d~~~al-- 74 (326)
T 1smk_A 8 GFKVAILGAAGGI-----GQPL--AMLMKMNPLVSVLHLYDVVNA-PGV---TADISHMDTGAVVRGFLGQQQLEAAL-- 74 (326)
T ss_dssp CEEEEEETTTSTT-----HHHH--HHHHHHCTTEEEEEEEESSSH-HHH---HHHHHTSCSSCEEEEEESHHHHHHHH--
T ss_pred CCEEEEECCCChH-----HHHH--HHHHHhCCCCCEEEEEeCCCc-HhH---HHHhhcccccceEEEEeCCCCHHHHc--
Confidence 3567776645543 2222 223345565456777775554 453 4467765555333 222 2334456
Q ss_pred CCcCEEEEcceeeecCCc------eecccccHHHHHHHHhcCC
Q 018280 246 GRVSAVIVGADRVAANGD------TANKIGTYSLALCAKFHNI 282 (358)
Q Consensus 246 ~~vd~VivGAd~i~~nG~------v~nkiGT~~lA~~Ak~~~i 282 (358)
+.+|.||+-|-.--..|. -.|--++..++-.+++++.
T Consensus 75 ~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p 117 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP 117 (326)
T ss_dssp TTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 899999998865443443 2566788888887777763
No 241
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.31 E-value=2e+02 Score=22.04 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=48.2
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCC--CCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHH
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDR--IPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALC 276 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~G--I~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~ 276 (358)
+...+|.++|..|...- .....|.+.| ..+....+..-+ ..+++...|.||+..+- .++ -|.-.+..+
T Consensus 18 ~~m~~iLivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~l 88 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRD--AMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM--PVK-----TGLEVLEWI 88 (150)
T ss_dssp --CEEEEEECSCHHHHH--HHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC--SSS-----CHHHHHHHH
T ss_pred CCccEEEEEcCCHHHHH--HHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC--CCC-----cHHHHHHHH
Confidence 45678999988776532 2245577776 455555554433 34566789999987643 221 233333333
Q ss_pred HH-hcCCeEEEeccCc
Q 018280 277 AK-FHNILFYVAAPLT 291 (358)
Q Consensus 277 Ak-~~~iPvyV~a~~~ 291 (358)
-+ ..++|+++++...
T Consensus 89 ~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 89 RSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHTTCSCEEEEEESCC
T ss_pred HHhCCCCeEEEEeCCC
Confidence 33 3479999987644
No 242
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=21.31 E-value=1.1e+02 Score=25.06 Aligned_cols=47 Identities=11% Similarity=-0.084 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcch
Q 018280 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS 237 (358)
Q Consensus 188 ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Ds 237 (358)
.+...|+.+.++| ..|++.=+||...-... ...|.+.|+++..|..+
T Consensus 28 ~~~~al~~l~~~G--~~iii~TgR~~~~~~~~-~~~l~~~gi~~~~I~~n 74 (142)
T 2obb_A 28 FAVETLKLLQQEK--HRLILWSVREGELLDEA-IEWCRARGLEFYAANKD 74 (142)
T ss_dssp THHHHHHHHHHTT--CEEEECCSCCHHHHHHH-HHHHHTTTCCCSEESSS
T ss_pred HHHHHHHHHHHCC--CEEEEEeCCCcccHHHH-HHHHHHcCCCeEEEEcC
Confidence 3567888888776 57778888875322122 33478889988777654
No 243
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=21.24 E-value=1.6e+02 Score=26.93 Aligned_cols=78 Identities=6% Similarity=-0.020 Sum_probs=39.8
Q ss_pred CeeEEEEecCCCCCc---chHHHHHHHHhCC-CCeEEEcch------HHH-HhhhcCCcCEEEEcceeeecCCceecccc
Q 018280 201 VLERAYCSETRPFNQ---GSRLTAFELVHDR-IPATLIADS------AAA-ALMKDGRVSAVIVGADRVAANGDTANKIG 269 (358)
Q Consensus 201 ~~~~V~v~EsrP~~q---G~rlta~eL~~~G-I~vtlI~Ds------a~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiG 269 (358)
++++|.+.-.....+ +..+.+.-|.+.| +.|++..|. ... -.+ .+.|+||+.. +|+..+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-----~~~~l~~-- 73 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-----NGDSWPE-- 73 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-----CSSCCCH--
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-----CCCcCCH--
Confidence 345555553333221 2233344455566 666666552 110 124 6799998643 5655443
Q ss_pred cHHHHHHHHh--cCCeEEEec
Q 018280 270 TYSLALCAKF--HNILFYVAA 288 (358)
Q Consensus 270 T~~lA~~Ak~--~~iPvyV~a 288 (358)
.+.+-+.++ .|.+++++-
T Consensus 74 -~~~~~l~~yV~~Ggglv~~H 93 (281)
T 4e5v_A 74 -ETNRRFLEYVQNGGGVVIYH 93 (281)
T ss_dssp -HHHHHHHHHHHTTCEEEEEG
T ss_pred -HHHHHHHHHHHcCCCEEEEe
Confidence 333333332 589999874
No 244
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=21.16 E-value=4.2e+02 Score=24.10 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=25.5
Q ss_pred HhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 241 ~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
..+.+.+..+|++.. -.|| +...--.++-+|++||+++++=
T Consensus 166 ~~i~~~~~~~v~~~~---~~~~---~~~~l~~i~~l~~~~~~~li~D 206 (425)
T 3ecd_A 166 ALAQQHKPSLIIAGF---SAYP---RKLDFARFRAIADSVGAKLMVD 206 (425)
T ss_dssp HHHHHHCCSEEEEEC---SCCC---SCCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHhhcCCcEEEEcc---ccCC---CcCCHHHHHHHHHHcCCEEEEE
Confidence 334334667777642 2345 2333457888999999998873
No 245
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=21.07 E-value=2e+02 Score=21.89 Aligned_cols=82 Identities=9% Similarity=-0.023 Sum_probs=49.8
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHHhC-CCCeE-EEcchHHH-HhhhcC-CcCEEEEcceeeecCCceecccccHHHH
Q 018280 199 EGVLERAYCSETRPFNQGSRLTAFELVHD-RIPAT-LIADSAAA-ALMKDG-RVSAVIVGADRVAANGDTANKIGTYSLA 274 (358)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~eL~~~-GI~vt-lI~Dsa~~-~~m~~~-~vd~VivGAd~i~~nG~v~nkiGT~~lA 274 (358)
.++..+|+++|..|.... .....|.+. |+.+. ...+..-+ ..+++. .+|.||+..+- .+ .-|--.+.
T Consensus 10 ~~~~~~vlivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~-----~~g~~~~~ 80 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRL--YIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEM--PV-----MDGMEFLR 80 (145)
T ss_dssp -CCSEEEEEECSCHHHHH--HHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTS--CC-----CTTCHHHH
T ss_pred CCCCCeEEEEcCCHHHHH--HHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCC--CC-----CCHHHHHH
Confidence 477889999998887533 235567776 77765 44444333 234445 79999987543 22 22444455
Q ss_pred HHHHhcCCeEEEecc
Q 018280 275 LCAKFHNILFYVAAP 289 (358)
Q Consensus 275 ~~Ak~~~iPvyV~a~ 289 (358)
.+-+.+..|++++..
T Consensus 81 ~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 81 HAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHCCCEEC-CBS
T ss_pred HHHhcCCCCeEEEEE
Confidence 555567788888764
No 246
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.92 E-value=3.4e+02 Score=22.03 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHHHHhCCCCeEEEcchHHHHhhhcCCcCEEEEc
Q 018280 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (358)
Q Consensus 221 a~eL~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (358)
++.+++.|+++..|+++.-+.+- +.+|.++.-
T Consensus 107 ~~~ak~~g~~vi~IT~~~~s~l~--~~ad~~l~~ 138 (187)
T 3sho_A 107 LAGAAERGVPTMALTDSSVSPPA--RIADHVLVA 138 (187)
T ss_dssp HHHHHHTTCCEEEEESCTTSHHH--HHCSEEEEC
T ss_pred HHHHHHCCCCEEEEeCCCCCcch--hhCcEEEEe
Confidence 55677899999999987766665 567877764
No 247
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=20.86 E-value=20 Score=31.13 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=9.9
Q ss_pred HHHHhCCCCeEEEcchHHHHhh
Q 018280 222 FELVHDRIPATLIADSAAAALM 243 (358)
Q Consensus 222 ~eL~~~GI~vtlI~Dsa~~~~m 243 (358)
++|.+.|++|.+|.-.++..++
T Consensus 22 ~~L~~~g~~V~vv~T~~A~~~i 43 (189)
T 2ejb_A 22 QVLEELDFSVDLVISRNAKVVL 43 (189)
T ss_dssp HHHHHTTCEEEEEECHHHHHHH
T ss_pred HHHHHCCCEEEEEEChhHHHHh
Confidence 3444445555544443444443
No 248
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=20.74 E-value=4.3e+02 Score=23.16 Aligned_cols=111 Identities=21% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCe-eEEEE----ec---CCCCC--------cc
Q 018280 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL-ERAYC----SE---TRPFN--------QG 216 (358)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~-~~V~v----~E---srP~~--------qG 216 (358)
++..+.+.|. +.+|+..+- |.+ | -.++..+...|.. +.++= .+ .|-.+ .-
T Consensus 18 ~g~~~q~~l~------~~~VlvvG~-Ggl-----G--~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~K 83 (251)
T 1zud_1 18 IALDGQQKLL------DSQVLIIGL-GGL-----G--TPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPK 83 (251)
T ss_dssp THHHHHHHHH------TCEEEEECC-STT-----H--HHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBH
T ss_pred cCHHHHHHHh------cCcEEEEcc-CHH-----H--HHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHH
Confidence 5667777787 457777764 322 2 2345555666754 33331 11 22210 11
Q ss_pred hHHHHHHHHhC--CCCeEEEc----chHHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEec
Q 018280 217 SRLTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 217 ~rlta~eL~~~--GI~vtlI~----Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a 288 (358)
+.-.+..|.+. +++++.+. +.....++ +++|.||...|... .-+.+.-.|+.+++|++.+.
T Consensus 84 a~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~--~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 84 SQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV--ARADVVLDCTDNMA---------TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--HHCSEEEECCSSHH---------HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--hcCCEEEECCCCHH---------HHHHHHHHHHHhCCCEEEEe
Confidence 12234455543 56666654 23445566 68899988766432 23567778889999998764
No 249
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=20.58 E-value=1.8e+02 Score=28.32 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=57.9
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CCeeEEEEecC-CC----------------CCc
Q 018280 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GVLERAYCSET-RP----------------FNQ 215 (358)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~---g~~~~V~v~Es-rP----------------~~q 215 (358)
.++++|+ +|++|..++.+ ++-..+++.+.+. -++++++..=+ .| +++
T Consensus 20 EAv~~Ik-----dGd~V~~~g~~--------g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
T 3eh7_A 20 EAVKHIK-----NGERVALSHAA--------GVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFV 86 (434)
T ss_dssp HHHTTCC-----TTCEEEECCGG--------GCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------
T ss_pred HHHHhCC-----CcCEEEECCcc--------CCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcC
Confidence 3456788 89999987643 3334444444332 24566663311 11 122
Q ss_pred chHHHHHHHHhCC-CCeEEEcchHHHHhhhcC--CcCEEEEcceeeecCCceeccccc-HHHHHHHHhcCCeEEE
Q 018280 216 GSRLTAFELVHDR-IPATLIADSAAAALMKDG--RVSAVIVGADRVAANGDTANKIGT-YSLALCAKFHNILFYV 286 (358)
Q Consensus 216 G~rlta~eL~~~G-I~vtlI~Dsa~~~~m~~~--~vd~VivGAd~i~~nG~v~nkiGT-~~lA~~Ak~~~iPvyV 286 (358)
|..+ +++...| +...-+--+..+.++..+ ++|.+++.+...-.+|.+.= |+ ...+..+.....-|++
T Consensus 87 ~~~~--r~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~--g~s~~~~~~~~~~A~~VI~ 157 (434)
T 3eh7_A 87 GGNS--RKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF--GVSCDYSKPAAESAHLVIG 157 (434)
T ss_dssp -------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC--TTBCTTHHHHHHHCSEEEE
T ss_pred CHHH--HHHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe--cCccchHHHHHHhCCeEEE
Confidence 2221 2344444 333333466677777653 78999999999988998753 43 2344444454554444
No 250
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=20.53 E-value=4e+02 Score=22.77 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=29.7
Q ss_pred EEEcceeeec-CCceecccccHHHH--HHHHhcCCeEEEe
Q 018280 251 VIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVA 287 (358)
Q Consensus 251 VivGAd~i~~-nG~v~nkiGT~~lA--~~Ak~~~iPvyV~ 287 (358)
+|+|||.|+. ||.+..|=.+..-| ++.+-.|..--|.
T Consensus 65 ~VigaDTvV~~~g~ilgKP~~~~eA~~mL~~lsG~~h~v~ 104 (189)
T 1ex2_A 65 IVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVI 104 (189)
T ss_dssp EEEEEEEEEEETTEEECCCSSHHHHHHHHHHHTTSEEEEE
T ss_pred eEEEeCeEEEECCEEcCCCCCHHHHHHHHHHhCCCcEEEE
Confidence 7999999987 99999999999876 4666666665544
No 251
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=20.51 E-value=86 Score=26.64 Aligned_cols=36 Identities=8% Similarity=-0.107 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS 208 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~ 208 (358)
++|+++.+||||. -..+..+...|+++|..+-++..
T Consensus 77 ~~D~vii~S~Sg~-----n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 77 AVDRVLIFTPDTE-----RSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TTCEEEEEESCSC-----CHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEeCCCC-----CHHHHHHHHHHHHCCCcEEEEeC
Confidence 7899999999863 12355666777777765544443
No 252
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=20.27 E-value=1.8e+02 Score=26.65 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=60.4
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHC-CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcc----hHHHHhh
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSE-GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----SAAAALM 243 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~-g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~D----sa~~~~m 243 (358)
+.+||..+-+|.+ |. .+.+.+.++ |. .+|++....+.. ...+ ..++...++.+ +..| ..+..++
T Consensus 21 ~k~vlVTGatG~i-----G~--~l~~~L~~~~g~-~~V~~~~r~~~~-~~~~-~~~~~~~~v~~-~~~Dl~d~~~l~~~~ 89 (344)
T 2gn4_A 21 NQTILITGGTGSF-----GK--CFVRKVLDTTNA-KKIIVYSRDELK-QSEM-AMEFNDPRMRF-FIGDVRDLERLNYAL 89 (344)
T ss_dssp TCEEEEETTTSHH-----HH--HHHHHHHHHCCC-SEEEEEESCHHH-HHHH-HHHHCCTTEEE-EECCTTCHHHHHHHT
T ss_pred CCEEEEECCCcHH-----HH--HHHHHHHhhCCC-CEEEEEECChhh-HHHH-HHHhcCCCEEE-EECCCCCHHHHHHHH
Confidence 5567766655533 32 244555555 53 256665443321 1122 33343334432 2333 4556677
Q ss_pred hcCCcCEEEEcceeeec--------CCceecccccHHHHHHHHhcCCeEEEeccCcc
Q 018280 244 KDGRVSAVIVGADRVAA--------NGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (358)
Q Consensus 244 ~~~~vd~VivGAd~i~~--------nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k 292 (358)
.++|.||--|-.... .---.|-.||..++-+|+.++++-+|...+.+
T Consensus 90 --~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~ 144 (344)
T 2gn4_A 90 --EGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK 144 (344)
T ss_dssp --TTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred --hcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 688988876632110 00124778999999999999987777665543
No 253
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=20.27 E-value=2.6e+02 Score=22.92 Aligned_cols=85 Identities=6% Similarity=-0.059 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEE--cchHHHHhhhcCCcCEEEEcceeeecCCceeccc
Q 018280 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--ADSAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (358)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI--~Dsa~~~~m~~~~vd~VivGAd~i~~nG~v~nki 268 (358)
.+.+.+.++| .+|+++.-+|. ++ .+|. .++.+... .|... ..+ ..+|.||--|-.- ....-.|-.
T Consensus 15 ~l~~~L~~~g--~~V~~~~R~~~----~~--~~~~-~~~~~~~~D~~d~~~-~~~--~~~d~vi~~ag~~-~~~~~~~~~ 81 (221)
T 3ew7_A 15 RILEEAKNRG--HEVTAIVRNAG----KI--TQTH-KDINILQKDIFDLTL-SDL--SDQNVVVDAYGIS-PDEAEKHVT 81 (221)
T ss_dssp HHHHHHHHTT--CEEEEEESCSH----HH--HHHC-SSSEEEECCGGGCCH-HHH--TTCSEEEECCCSS-TTTTTSHHH
T ss_pred HHHHHHHhCC--CEEEEEEcCch----hh--hhcc-CCCeEEeccccChhh-hhh--cCCCEEEECCcCC-ccccchHHH
Confidence 3556666767 46666654432 22 2343 45543321 22222 556 7899988766432 222345778
Q ss_pred ccHHHHHHHHhcCCeEEEec
Q 018280 269 GTYSLALCAKFHNILFYVAA 288 (358)
Q Consensus 269 GT~~lA~~Ak~~~iPvyV~a 288 (358)
||..+.-+|+..+++-+|..
T Consensus 82 ~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 82 SLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp HHHHHHHHHCSCCSSEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEE
Confidence 99999999999866545443
No 254
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=20.13 E-value=1.6e+02 Score=25.57 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=50.4
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHH-HhhhcCCcCEEEEcceeeecCCceecccccHHHHHH-H
Q 018280 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALC-A 277 (358)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~-A 277 (358)
....+|.++|..|...- +....|.+.|+.|....+..-+ ..+++..+|.|++..+-=-.|| --.+..+ .
T Consensus 127 ~~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G-------~~l~~~ir~ 197 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRR--LLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDG-------YRLTQRIRQ 197 (254)
T ss_dssp CCCCEEEEEESSHHHHH--HHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCC-------HHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHH--HHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCH-------HHHHHHHHh
Confidence 34578899998877642 2355688889998877765443 3345677999998654221232 2222222 2
Q ss_pred HhcCCeEEEeccC
Q 018280 278 KFHNILFYVAAPL 290 (358)
Q Consensus 278 k~~~iPvyV~a~~ 290 (358)
...++|+++++..
T Consensus 198 ~~~~~piI~lt~~ 210 (254)
T 2ayx_A 198 LGLTLPVIGVTAN 210 (254)
T ss_dssp HHCCSCEEEEESS
T ss_pred cCCCCcEEEEECC
Confidence 3357999988653
No 255
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=20.12 E-value=3.4e+02 Score=23.20 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHHhCCCCeEEE--cch---HHHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEe
Q 018280 221 AFELVHDRIPATLI--ADS---AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (358)
Q Consensus 221 a~eL~~~GI~vtlI--~Ds---a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~ 287 (358)
+..|.+.|++++.. ..+ .+-.+. .+.|++++|+ .+ .+ . -.|+..-.+ .++-.+||+|+
T Consensus 205 ~~~l~~~~~~~~~~~~~g~~~~~i~~~a--~~~dliV~G~-~~--~~-~--~~Gs~~~~v-l~~~~~pvlvv 267 (268)
T 3ab8_A 205 EAYLRDHGVEASALVLGGDAADHLLRLQ--GPGDLLALGA-PV--RR-L--VFGSTAERV-IRNAQGPVLTA 267 (268)
T ss_dssp HHHHHHTTCCEEEEEECSCHHHHHHHHC--CTTEEEEEEC-CC--SC-C--SSCCHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHcCCceEEEEeCCChHHHHHHHH--HhCCEEEECC-cc--cc-c--EeccHHHHH-HhcCCCCEEEe
Confidence 44577889988754 222 222233 2339999999 21 11 1 246655444 45668999985
No 256
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=20.08 E-value=2.2e+02 Score=21.73 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=43.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHhC-CC-CeEEEcchHHH-Hhhhc-CCcCEEEEcceeeecCCceecccccHHHHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVHD-RI-PATLIADSAAA-ALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~~-GI-~vtlI~Dsa~~-~~m~~-~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~A 277 (358)
..+|.++|..|.... .+ ...|.+. |. .+....+..-+ ..+++ ..+|.||+..+---.+ |--.+..+-
T Consensus 3 ~~~iLivdd~~~~~~-~l-~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~-------g~~~~~~l~ 73 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRA-GA-KNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAE-------AIDGLVRLK 73 (154)
T ss_dssp CEEEEEECSCHHHHH-HH-HHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------------CHHHHHHHH
T ss_pred ccEEEEEcCCHHHHH-HH-HHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCc-------hHHHHHHHH
Confidence 467888887776432 23 4557766 77 45555544332 34455 6799999987532112 333333333
Q ss_pred Hh-cCCeEEEeccCc
Q 018280 278 KF-HNILFYVAAPLT 291 (358)
Q Consensus 278 k~-~~iPvyV~a~~~ 291 (358)
+. .++|+++++...
T Consensus 74 ~~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 74 RFDPSNAVALISGET 88 (154)
T ss_dssp HHCTTSEEEEC----
T ss_pred HhCCCCeEEEEeCCC
Confidence 33 479999987653
No 257
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=20.06 E-value=3.1e+02 Score=23.51 Aligned_cols=44 Identities=7% Similarity=0.095 Sum_probs=28.7
Q ss_pred cCCcCEEEEcceeeecCCcee-cccccHHHHHHHHhcCCeEEEeccCc
Q 018280 245 DGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVAAPLT 291 (358)
Q Consensus 245 ~~~vd~VivGAd~i~~nG~v~-nkiGT~~lA~~Ak~~~iPvyV~a~~~ 291 (358)
+.++|++++|...- ++..- --.|+..-.++ ++-++||+|+-+..
T Consensus 107 ~~~~dliV~G~~g~--~~~~~~~~~Gs~~~~v~-~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 107 ARAADLLVLGRSGE--AHGDGFGGLGSTADRVL-RASPVPVLLAPGEP 151 (268)
T ss_dssp HTTCSEEEEESSCT--TSCTTCCSCCHHHHHHH-HHCSSCEEEECSSC
T ss_pred ccCCCEEEEeccCC--CccccccccchhHHHHH-HhCCCCEEEECCCC
Confidence 48999999998752 10221 12576555554 66789999986543
No 258
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.05 E-value=1.9e+02 Score=22.19 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=46.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHHh-CCCCeE-EEcchH-HHHhhhcCCcCEEEEcceeeecCCceecccccHHHHHHHH
Q 018280 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPAT-LIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (358)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~eL~~-~GI~vt-lI~Dsa-~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (358)
..+|.+.|..|.... .+ ...|.+ .|+.+. ...+.. +-..+++...|.||+..+- .++ -|--.+..+.+
T Consensus 5 ~~~ILivdd~~~~~~-~l-~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~l~~ 75 (153)
T 3cz5_A 5 TARIMLVDDHPIVRE-GY-RRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGP-----GGIEATRHIRQ 75 (153)
T ss_dssp CEEEEEECSCHHHHH-HH-HHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSS-----CHHHHHHHHHH
T ss_pred ccEEEEECCcHHHHH-HH-HHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----CHHHHHHHHHH
Confidence 467888887776532 22 445666 688776 444433 2334556779999987653 221 23333333333
Q ss_pred h-cCCeEEEeccCc
Q 018280 279 F-HNILFYVAAPLT 291 (358)
Q Consensus 279 ~-~~iPvyV~a~~~ 291 (358)
. .++|+++++...
T Consensus 76 ~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 76 WDGAARILIFTMHQ 89 (153)
T ss_dssp HCTTCCEEEEESCC
T ss_pred hCCCCeEEEEECCC
Confidence 3 479999887543
No 259
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=20.04 E-value=1e+02 Score=23.68 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=26.9
Q ss_pred hhcCCcCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEE
Q 018280 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (358)
Q Consensus 243 m~~~~vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV 286 (358)
++++++.+||+..|+= +| ....+-..|+.++||++.
T Consensus 34 i~~gkaklVilA~D~~-~~-------~~~~i~~~c~~~~ip~~~ 69 (105)
T 3u5e_c 34 LRQGKSKLIIIAANTP-VL-------RKSELEYYAMLSKTKVYY 69 (105)
T ss_dssp HHTTCCSEEEECTTSC-HH-------HHHHHHHHHHHHTCEEEE
T ss_pred HHcCCceEEEEeCCCC-HH-------HHHHHHHHHHHcCCCEEE
Confidence 4558999999998771 22 345667788999999985
No 260
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=20.01 E-value=2.7e+02 Score=24.91 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCC
Q 018280 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (358)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~ 247 (358)
.+..|...++- . .+++...+ + ++|+|.|-.|...|.. ..+|+...+++ ++
T Consensus 115 ~~~kV~vIG~~---------p--~l~~~l~~--~-~~v~V~d~~p~~~~~~--------------~~~~~~e~~~l--~~ 164 (249)
T 3npg_A 115 EIKRIAIIGNM---------P--PVVRTLKE--K-YEVYVFERNMKLWDRD--------------TYSDTLEYHIL--PE 164 (249)
T ss_dssp CCSEEEEESCC---------H--HHHHHHTT--T-SEEEEECCSGGGCCSS--------------EECGGGHHHHG--GG
T ss_pred CCCEEEEECCC---------H--HHHHHHhc--c-CCEEEEECCCcccCCC--------------CCChhHHHhhh--cc
Confidence 44777777542 2 23344432 3 7999999999874431 12565555688 99
Q ss_pred cCEEEEcceeeecCCceecccccHHHHHHHHhcCCeEEEeccCccccCCCC
Q 018280 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (358)
Q Consensus 248 vd~VivGAd~i~~nG~v~nkiGT~~lA~~Ak~~~iPvyV~a~~~k~~~~~~ 298 (358)
+|.|++-.-++. || |..-=+-......+++++.||.-+.|..-
T Consensus 165 ~D~v~iTGsTlv-N~-------Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~ 207 (249)
T 3npg_A 165 VDGIIASASCIV-NG-------TLDMILDRAKKAKLIVITGPTGQLLPEFL 207 (249)
T ss_dssp CSEEEEETTHHH-HT-------CHHHHHHHCSSCSEEEEESGGGCSCGGGG
T ss_pred CCEEEEEeeeec-cC-------CHHHHHHhCcccCeEEEEecCchhhHHHH
Confidence 999987665542 43 33322211234558899999988877643
No 261
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=20.00 E-value=3.4e+02 Score=26.24 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=52.1
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHHhCCCCeEEEcchHHHHhhhcCCc
Q 018280 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (358)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~ta~~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~m~~~~v 248 (358)
|..||..+- | ..+..-++.+.+.|-...|+-.+-.| .+ .+|.+.| .++++...--...+ ..+
T Consensus 12 ~~~vlVvGg-G-------~va~~k~~~L~~~ga~V~vi~~~~~~-----~~--~~l~~~~-~i~~~~~~~~~~~l--~~~ 73 (457)
T 1pjq_A 12 DRDCLIVGG-G-------DVAERKARLLLEAGARLTVNALTFIP-----QF--TVWANEG-MLTLVEGPFDETLL--DSC 73 (457)
T ss_dssp TCEEEEECC-S-------HHHHHHHHHHHHTTBEEEEEESSCCH-----HH--HHHHTTT-SCEEEESSCCGGGG--TTC
T ss_pred CCEEEEECC-C-------HHHHHHHHHHHhCcCEEEEEcCCCCH-----HH--HHHHhcC-CEEEEECCCCcccc--CCc
Confidence 556777652 2 24566677777778766666543222 22 2454432 34454432222233 456
Q ss_pred CEEEEcceeeecCCce-ecccccHHHHHHHHhcCCeEEEeccC
Q 018280 249 SAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPL 290 (358)
Q Consensus 249 d~VivGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~iPvyV~a~~ 290 (358)
|.|+.. -|+- .| ..++..|+.+|||+-++.+.
T Consensus 74 ~lVi~a------t~~~~~n----~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 74 WLAIAA------TDDDTVN----QRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp SEEEEC------CSCHHHH----HHHHHHHHHTTCEEEETTCT
T ss_pred cEEEEc------CCCHHHH----HHHHHHHHHcCCEEEECCCc
Confidence 666553 2322 33 36888999999998776543
Done!