BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018281
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PPRA + N+ +V++V+ +++PG+L E+ LSDL L I A+I++ G +D F+V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G+KI I I L
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 96 DYIEKALGPKGHITAGAKTW---PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANL 152
+ IEK PK GAK + P ++ + IE+ G DRPGLLSEI+ L++L
Sbjct: 815 EMIEKRTKPK----RGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDL 870
Query: 153 RFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEK 210
++A+A + T ++ YV D T + + R++ + +L L G E K
Sbjct: 871 SLDIASAHITTFGEKVIDTFYVT-DLTGQKIDSPARIATIRNRLMATLEGIAPERGGK 927
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGE 327
+SV+ V+ DR L+ +I TL+D+ + A I++ G +Y+ + G +D+
Sbjct: 846 FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPAR 905
Query: 328 ----KERVIKCLEA 337
+ R++ LE
Sbjct: 906 IATIRNRLMATLEG 919
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 10 DPEYESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65
D + S S R+ PPR +DN++ TV++V+ ++PG+L +V LS L I+
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898
Query: 66 AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPS 117
A+I++ G +DVF+V D G KITD + + + L +T+ T P+
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL--LASLTSAPVTTPA 948
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 35/224 (15%)
Query: 4 AYWPYFDPEYESLSLRI--------NPPRASVDNSSCPE--CTVVKVDSVNKPGILLEVV 53
+YW FD + + R+ +P +V+ PE T + V + PG+ ++
Sbjct: 716 SYWLGFDTDTQMRHARMVHDSDRYRSP--VTVEAYPIPERGVTELTVLCADHPGLFSQIA 773
Query: 54 QVL--SDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITD----GKTIDYIEKALGPKGH 107
L S ++ + + SDG +D F V D +G + G+ +E+AL +
Sbjct: 774 GALAVSGASIVDARIHTLSDG-MALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLD 832
Query: 108 ITAG--------------AKTWPSKQVGVHSVGD-HTAIELIGRDRPGLLSEISAVLANL 152
I G A P + V ++ D HT IE+ GRDRPGLL ++++ L++
Sbjct: 833 IRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSA 892
Query: 153 RFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
+++A + T+ R V YV D + + D RL+ + E L
Sbjct: 893 SLQISSAHITTYGMRAVDVFYVRDLLGMK-ITDPVRLARLRETL 935
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 47/234 (20%)
Query: 113 KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC-V 171
+ +P + GV T + ++ D PGL S+I+ LA ++ A + T + +A
Sbjct: 746 EAYPIPERGV------TELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDT 799
Query: 172 LYVNDDTTC--RAVGDQTRLS-LMEEQLK---NILRGCDDEDSEKVARTSFSMGFTHVDR 225
+V D C RL+ L+E+ L +I +G +D +R ++
Sbjct: 800 FWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAI------- 852
Query: 226 RLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDI 285
H P P + ++ ++V+ V RDR L+ D+
Sbjct: 853 ------------------------HVP---PRVVIDNTASDRHTVIEVNGRDRPGLLHDV 885
Query: 286 VCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339
L+ + A I++ G A +Y+R + G + R+ + L A++
Sbjct: 886 TSALSSASLQISSAHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP + NS + TV++V+ +++PG+L E+ VLSDL L I A I++ G +D F+V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G+KI++ YI L
Sbjct: 885 ADLVGQKISNENRRAYITARL 905
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ DRPGLLSEI+AVL++L ++ +A + T ++ YV D + + ++ R
Sbjct: 839 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA-DLVGQKISNENR 897
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+ + +LK ++ G +DE E++
Sbjct: 898 RAYITARLKAVMAGEEDEMRERM 920
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
P + + ++V+ V+C DR L+ +I L+D+ + A I++ G +Y+
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 316 HMDGCILDTEGEKERVIKCLEAAI 339
+ G + E + + L+A +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVM 909
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP ++ NS + TV++V+ +++PG+L E+ VLSDL L I A I++ G +D F+V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883
Query: 82 IDQQGKKIT 90
D G+KI+
Sbjct: 884 TDLVGQKIS 892
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175
PS + T IE+ DRPGLLSEI+AVL++L ++ +A + T ++ YV
Sbjct: 825 PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Query: 176 DDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKV 211
D + GD R ++ ++K ++ +DE E++
Sbjct: 885 DLVGQKISGDSKRANIT-ARMKAVMAEEEDELRERM 919
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 40/84 (47%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
P + + ++V+ V+C DR L+ +I L+D+ + A I++ G +Y+
Sbjct: 825 PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Query: 316 HMDGCILDTEGEKERVIKCLEAAI 339
+ G + + ++ + ++A +
Sbjct: 885 DLVGQKISGDSKRANITARMKAVM 908
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PPR +DN++ TV++V+ ++PG+L ++ + L++L L I+ A IS+ G +DVF+V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G K+T + I + L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 62 IITKAYISSDGGWFMDVFHVIDQQG-----------------KKITDG--KTIDYIEKAL 102
I+ + G +DVF V D G +K+ G K + + K
Sbjct: 772 IVDARIFTMTNGMALDVFTVQDAAGGGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRK 831
Query: 103 GPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162
P T P + ++ HT IE+ GRDRPGLL +++ L NL +++A++
Sbjct: 832 APHASRTRVFHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS 891
Query: 163 THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200
T+ + V YV D + V + +L+ + E+L + L
Sbjct: 892 TYGEKAIDVFYVKDVFGLK-VTHENKLAQIRERLLHAL 928
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 247 QVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306
+V H P P + ++ ++V+ V RDR L++D+ LT++ + A IS+ G
Sbjct: 839 RVFHVP---PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGE 895
Query: 307 HASQEYYIRHMDGCILDTEGE----KERVIKCL 335
A +Y++ + G + E + +ER++ L
Sbjct: 896 KAIDVFYVKDVFGLKVTHENKLAQIRERLLHAL 928
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKAL-----GPKGHITAG 111
D G KI++ I + L G G T G
Sbjct: 894 DLVGHKISNATRQGNIRRKLLGVLSGENGSKTNG 927
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DVLAKRTKPKRAAKA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202
+A+A + T ++ YV D + + TR + +L +L G
Sbjct: 874 IASAHITTFGEKVIDSFYVT-DLVGHKISNATRQGNIRRKLLGVLSG 919
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ N+ + TV++V+ +++ G+L EV VLSDL L I A+I++ G +D F+V
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 83 DQQGKKIT 90
D G KIT
Sbjct: 891 DLVGSKIT 898
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ G DR GLLSE++AVL++L ++A+A + T ++ YV D + + +
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQ 903
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+++ +LK +L G DE E++
Sbjct: 904 MNIA-ARLKAVLAGEVDEARERM 925
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
PE+T+ ++V+ V+ DR L+ ++ L+D+ + A I++ G +Y+
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 316 HMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
+ G + +E + + L+A + V E
Sbjct: 891 DLVGSKITSENRQMNIAARLKAVLAGEVDE 920
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ N+ + TV++V+ +++ G+L EV VLSDL L I A+I++ G +D F+V
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 83 DQQGKKIT 90
D G KIT
Sbjct: 891 DLVGSKIT 898
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ G DR GLLSE++AVL++L ++A+A + T ++ YV D + + +
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQ 903
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+++ +LK +L G DE E++
Sbjct: 904 MNIA-ARLKAVLAGEVDEARERM 925
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
PE+T+ ++V+ V+ DR L+ ++ L+D+ + A I++ G +Y+
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 316 HMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
+ G + +E + + L+A + V E
Sbjct: 891 DLVGSKITSENRQMNIAARLKAVLAGEVDE 920
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PPR VDN + TV++++ ++PG L V + L+D+ + I+ A +S+ G +D F+V
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G KI + I +AL
Sbjct: 885 KDVFGMKIVHRAKLAQIREAL 905
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 37/205 (18%)
Query: 4 AYWPYFDP----EYESLSLRINPPRASVDNSSCPE----CTVVKVDSVNKPGILLEVV-- 53
AYW FD + + R +V P+ + V V + + PG+ ++
Sbjct: 687 AYWLTFDSATHLRHARMLRRARDAGLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGA 746
Query: 54 QVLSDLDLIITKAYISSDGGWFMDVF-------HVIDQQ------GKKITDGKTIDY-IE 99
L+ ++++ K SDGG +D+F H I+++ K + D T D +E
Sbjct: 747 MALAGVNILDAKITTMSDGG-ALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLE 805
Query: 100 KAL---GPK-----GHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLAN 151
KAL P+ H+T P V + HT IE+ GRDRPG L ++ L +
Sbjct: 806 KALRRQPPRLPERTRHLTVP----PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTD 861
Query: 152 LRFNVAAAEVWTHNRRIACVLYVND 176
+ +++A V T+ R+ YV D
Sbjct: 862 VAVQISSARVSTYGERVVDSFYVKD 886
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 28/207 (13%)
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
D PGL S+I+ +A N+ A++ T + A ++ A+ + R++ + + +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794
Query: 197 KNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKP 256
+++L G D EK R RL ++ H + P
Sbjct: 795 RDVLTG--DLPLEKALRRQPP--------RL-----------------PERTRHL-TVPP 826
Query: 257 EITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316
+ V+ K ++V+ + RDR ++ + LTD+ + A +S+ G +Y++
Sbjct: 827 RVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKD 886
Query: 317 MDGCILDTEGEKERVIKCLEAAIRRRV 343
+ G + + ++ + LEAAI + V
Sbjct: 887 VFGMKIVHRAKLAQIREALEAAITQTV 913
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ NS + TV++++ +++ G+L EV VL+DL L I A I++ G +D F+VI
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 83 DQQGKKITD 91
D G+KIT+
Sbjct: 886 DLVGQKITN 894
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ DR GLL+E++AVLA+L ++ +A + T ++ YV D + + ++ R
Sbjct: 839 TVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI-DLVGQKITNENR 897
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+ +LK ++ DE E++
Sbjct: 898 QGSISVRLKAVMSEQPDELREQM 920
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 48/104 (46%)
Query: 243 TTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS 302
T + + T + KP +T+ ++V+ ++C DR L+ ++ L D+ + A I+
Sbjct: 813 TKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT 872
Query: 303 SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEV 346
+ G +Y+ + G + E + + L+A + + E+
Sbjct: 873 TFGEKVIDTFYVIDLVGQKITNENRQGSISVRLKAVMSEQPDEL 916
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P +DN + TVV+ ++PG+L + + +SD L I A+I G +D F+V+
Sbjct: 831 PAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVV 890
Query: 83 DQQGKKITDGK 93
D G+K+TD +
Sbjct: 891 DADGRKLTDAR 901
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 44 NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKIT--DGKTIDYIEK 100
++P + +++ + ++ + A + +S G +DVF+V D G+ D + + + +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 101 ALG-----------PK-----GHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSE 144
L P+ G A A T P+ + + T +E GRDRPGLL+
Sbjct: 801 TLACAARGEPVAREPRKPQDLGRTAAFAIT-PAVMLDNEASETSTVVEASGRDRPGLLAA 859
Query: 145 ISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176
++ +++ ++ +A + + R YV D
Sbjct: 860 LARTISDAGLSILSAHIDGYGERAVDAFYVVD 891
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 68/188 (36%), Gaps = 33/188 (17%)
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVG--DQTRLSLMEE 194
DRP L +++ + NV A V+T A ++ D + + G D L+ + E
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 195 QLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSF 254
L RG E VAR R + G T A +
Sbjct: 801 TLACAARG------EPVAREP-------------------RKPQDLGRTAAFAI------ 829
Query: 255 KPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI 314
P + ++ + +VV RDR L+ + T++D + A I G A +Y+
Sbjct: 830 TPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYV 889
Query: 315 RHMDGCIL 322
DG L
Sbjct: 890 VDADGRKL 897
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP ++ N + TV++V+ +++PG+L ++ V++DL L I A I++ G +D F+V
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885
Query: 82 IDQQGKKITD 91
D G+K+T+
Sbjct: 886 TDLFGQKVTN 895
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175
PS + T IE+ DRPGLL++++AV+A+L ++ +A + T ++ YV
Sbjct: 827 PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 176 DDTTCRAVGDQTRLSLMEEQLKNILRGCDDE 206
D + D + S+ ++LK ++ +DE
Sbjct: 887 DLFGQKVTNDNRQASIA-QRLKAVMSEQEDE 916
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 44/94 (46%)
Query: 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEY 312
+ P +T+ ++V+ V+C DR L+ D+ + D+ + A I++ G +
Sbjct: 824 TIPPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTF 883
Query: 313 YIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEV 346
Y+ + G + + + + + L+A + + E+
Sbjct: 884 YVTDLFGQKVTNDNRQASIAQRLKAVMSEQEDEL 917
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P +++N TV++V +++PG+L E+ +S L+L I A++++ G DVF+V
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAK 113
D G +I I+ AL H+ AG K
Sbjct: 896 DLLGAQINAPTRQSAIKSAL---THVMAGDK 923
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ G DRPGLL E++ ++ L N+A+A V T R V YV D + + T
Sbjct: 848 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQ-INAPT 906
Query: 188 RLSLMEEQLKNILRG 202
R S ++ L +++ G
Sbjct: 907 RQSAIKSALTHVMAG 921
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/82 (18%), Positives = 38/82 (46%)
Query: 254 FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYY 313
+PE+T+ Y+V+ V DR L++++ ++ + + A +++ G A +Y
Sbjct: 834 IEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFY 893
Query: 314 IRHMDGCILDTEGEKERVIKCL 335
+ + G ++ + + L
Sbjct: 894 VTDLLGAQINAPTRQSAIKSAL 915
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 19 RINP----PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74
R+ P P+ V+N TV++V +++PG+L ++ +S L+L I A++++ G
Sbjct: 829 RLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGER 888
Query: 75 FMDVFHVIDQQGKKITDGKTIDYIEKAL 102
DVF+V D G +IT I++AL
Sbjct: 889 ARDVFYVTDLLGARITAPTRQAAIKRAL 916
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
HT IE+ G DRPGLL +++A ++ L N+A+A V T R V YV D R + T
Sbjct: 849 HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-ITAPT 907
Query: 188 RLSLMEEQLKNIL 200
R + ++ L ++L
Sbjct: 908 RQAAIKRALIHLL 920
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 19 RINP----PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74
R+ P P+ +++N T+++V +++PG+L ++ +S L+L I A++++ G
Sbjct: 827 RLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGER 886
Query: 75 FMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
DVF+V D G +IT I++AL H+ A T
Sbjct: 887 ARDVFYVTDLLGARITAPTRQAAIKRAL---VHLLASGNT 923
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
HT IE+ G DRPGLL +++ ++ L N+A+A V T R V YV D R + T
Sbjct: 847 HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-ITAPT 905
Query: 188 RLSLMEEQLKNIL 200
R + ++ L ++L
Sbjct: 906 RQAAIKRALVHLL 918
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 22/192 (11%)
Query: 26 SVDNSSCP--ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVI 82
SV P + T++ + +++ PG + + I A I ++ G MD V
Sbjct: 724 SVRGHEMPAYDATMISLYAIDHPGFFYRISGAIHATGGNILDARIHTTRDGMAMDNLLVQ 783
Query: 83 DQQGKKITDGKTIDYIEKAL--GPKGHITAGAKT--------WPSKQVGVHSV------- 125
+ QG I G+ ++ + +A+ HI + K W K V +
Sbjct: 784 NSQGGMIKSGEHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVEPLVFIDNQA 843
Query: 126 -GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVG 184
T IE+ +DRP LL ++ L N R +++A + T+ R V YV+D + + +
Sbjct: 844 SDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHK-IT 902
Query: 185 DQTRLSLMEEQL 196
+Q RL +E++L
Sbjct: 903 NQNRLKAIEKRL 914
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P +DN + TV++V++ ++P +L ++ L + L I+ A+I++ G +DVF+V
Sbjct: 835 PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVS 894
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D KIT+ + IEK L
Sbjct: 895 DLFSHKITNQNRLKAIEKRL 914
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 255 KPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI 314
+P + ++ ++V+ V +DR L+ D+ C L + + + A I++ G A +Y+
Sbjct: 834 EPLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYV 893
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++N+ TV++V +++PG+L ++ +S L+L I A++++ G DVF+V
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G +IT I++AL
Sbjct: 895 DLLGAQITAPTRQAAIKRAL 914
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175
P ++ + +T IE+ G DRPGLL +++ ++ L N+A+A V T R V YV
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 176 DDTTCRAVGDQTRLSLMEEQLKNILRGCD 204
D + + TR + ++ L ++L D
Sbjct: 895 DLLGAQ-ITAPTRQAAIKRALVHLLANGD 922
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR DN + TV++V++ ++ +L + + L + +I+ A+I++ G D F+V
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G KITD +D I +AL
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 19/180 (10%)
Query: 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGK 93
T+V V + + PG+ + + I A I ++ GW +D + V D G+ + +
Sbjct: 726 ATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEER 785
Query: 94 TIDYIEKALG----PKGHITAGAKTWPSKQ--VGVHSV-----------GDHTAIELIGR 136
+ IE+A+ +G + P KQ G V G T IE+ R
Sbjct: 786 QLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNAR 845
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
DR LL+ + L + V +A + + R A YV D T + + D++R+ + + L
Sbjct: 846 DRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAK-ITDESRMDTIRQAL 904
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 33/209 (15%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T + +I D PGL I+ + N+ A + T A Y+ D + ++ +
Sbjct: 727 TLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQ 786
Query: 189 LSLMEEQLKNIL--RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTAD 246
L+ +E+ + + + RG E K+A+ R L Q T A
Sbjct: 787 LARIEQAIADAIANRG---ELVPKLAK-----------RPLKQ-------------TRAG 819
Query: 247 QVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306
D +P + + ++V+ V RDRA L+ + L + Q +V A I++ G
Sbjct: 820 AFD----VRPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGE 875
Query: 307 HASQEYYIRHMDGCILDTEGEKERVIKCL 335
A+ +Y+ + G + E + + + L
Sbjct: 876 RAADTFYVTDLTGAKITDESRMDTIRQAL 904
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P S++N TV++V +++PG+L E+ +S L+L I A++++ G DVF+V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G +I I+ AL
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ G DRPGLL E++ ++ L N+A+A V T R V YV D + + T
Sbjct: 849 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQ-INAPT 907
Query: 188 RLSLMEEQLKNILRGCD 204
R + ++ L ++L D
Sbjct: 908 RQAAIKSALLHLLASED 924
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 43/93 (46%)
Query: 243 TTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS 302
TT + S +PE+++ + Y+V+ V DR L++++ ++ + + A ++
Sbjct: 824 TTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVA 883
Query: 303 SDGPHASQEYYIRHMDGCILDTEGEKERVIKCL 335
+ G A +Y+ + G ++ + + L
Sbjct: 884 TFGERARDVFYVTDLLGAQINAPTRQAAIKSAL 916
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P S++N TV++V +++PG+L E+ +S L+L I A++++ G DVF+V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G +I I+ AL
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ G DRPGLL E++ ++ L N+A+A V T R V YV D + + T
Sbjct: 849 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQ-INAPT 907
Query: 188 RLSLMEEQLKNILRGCDDEDSEKVA 212
R + ++ L ++L DD ++ A
Sbjct: 908 RQAAIKSALLHLL-ASDDTAAQPAA 931
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 43/93 (46%)
Query: 243 TTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS 302
TT + S +PE+++ + Y+V+ V DR L++++ ++ + + A ++
Sbjct: 824 TTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVA 883
Query: 303 SDGPHASQEYYIRHMDGCILDTEGEKERVIKCL 335
+ G A +Y+ + G ++ + + L
Sbjct: 884 TFGERARDVFYVTDLLGAQINAPTRQAAIKSAL 916
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++DN + + TVV+ ++PG+L + + L+D L I A+I G +D F+V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 83 DQQGKKITDGK 93
+G K+TD +
Sbjct: 894 TTEGGKVTDTR 904
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Query: 1 MANAYWPYF--DPEYESLSLRINPPRASVDNSSCPECTV--------VKVDSVNKPGILL 50
M NAY+ F D + L RA++ + E V V + + ++ G+
Sbjct: 694 MENAYFSAFSQDDLFHHAEL---ARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFA 750
Query: 51 EVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQG-----------KKITD-----GK 93
++ +S L + A + +S G +DVF+V D G +++ D GK
Sbjct: 751 DLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK 810
Query: 94 TIDY-IEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANL 152
+E G + A PS + + D T +E GRDRPGLL ++ LA+
Sbjct: 811 GDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADS 870
Query: 153 RFNVAAAEVWTHNRRIACVLYVN 175
++ +A + + R YV
Sbjct: 871 ALSIQSAHIDGYGERAVDAFYVQ 893
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 29/187 (15%)
Query: 133 LIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLM 192
+ +DR GL ++++ +++L NV A V+T + A ++ D T G + +L
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRAL- 798
Query: 193 EEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTP 252
+L + L D+ A G T A
Sbjct: 799 -RRLADALEAAGKGDA-----------------------LAVEPRRGSEQTRAAAF---- 830
Query: 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEY 312
+ P +T++ +VV RDR L+ + TL D + A I G A +
Sbjct: 831 AIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAF 890
Query: 313 YIRHMDG 319
Y++ +G
Sbjct: 891 YVQTTEG 897
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++DN + + TVV+ ++PG+L + + L+D L I A+I G +D F+V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 83 DQQGKKITDGK 93
+G K+TD +
Sbjct: 894 TTEGGKVTDTR 904
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Query: 1 MANAYWPYF--DPEYESLSLRINPPRASVDNSSCPECTV--------VKVDSVNKPGILL 50
M NAY+ F D + L RA++ + E V V + + ++ G+
Sbjct: 694 MENAYFSAFSQDDLFHHAEL---ARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFA 750
Query: 51 EVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQG-----------KKITD-----GK 93
++ +S L + A + +S G +DVF+V D G +++ D GK
Sbjct: 751 DLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK 810
Query: 94 TIDY-IEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANL 152
+E G + A PS + + D T +E GRDRPGLL ++ LA+
Sbjct: 811 GDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADS 870
Query: 153 RFNVAAAEVWTHNRRIACVLYVN 175
++ +A + + R YV
Sbjct: 871 ALSIQSAHIDGYGERAVDAFYVQ 893
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 29/187 (15%)
Query: 133 LIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLM 192
+ +DR GL ++++ +++L NV A V+T + A ++ D T G + +L
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRAL- 798
Query: 193 EEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTP 252
+L + L D+ A G T A
Sbjct: 799 -RRLADALEAAGKGDA-----------------------LAVEPRRGSEQTRAAAF---- 830
Query: 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEY 312
+ P +T++ +VV RDR L+ + TL D + A I G A +
Sbjct: 831 AIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAF 890
Query: 313 YIRHMDG 319
Y++ +G
Sbjct: 891 YVQTTEG 897
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHV 81
P + + T V V S ++P + VV L + + A I +S G+ +D F V
Sbjct: 679 PLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTFMV 738
Query: 82 IDQQGKKITDGK---TIDYIEKALGPKGHITAGAKTWPSK--QVGVHSVGD--------H 128
+DQ GK I +G+ +I L + P+K V + D
Sbjct: 739 LDQHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSKKR 798
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQ 186
T +E + D PGLL+++ A+L N+ AA++ T R + + + R +Q
Sbjct: 799 TLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGGRLSEEQ 856
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 53/97 (54%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + ++D + +++A+ + G+ T P++
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSPTR 897
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKITDG-----KTIDYIEKAL-GPK 105
V +S L+L I A I + F +D + V+D G I D + D + +AL P+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + + T +E+ DRPGLL+ + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTS 215
+ A++ T R+ V ++ D + + D S ++E + L+ D+ R +
Sbjct: 842 LQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSPT-RVT 899
Query: 216 F 216
F
Sbjct: 900 F 900
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
Query: 21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVF 79
N P + + T V V + ++P + VV L + + A I +S G +D F
Sbjct: 677 NKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTSKDGHVIDTF 736
Query: 80 HVIDQQGKKITDGK---TIDYIEKALGPKGHITAGAKTWPSK--QVGVHSVGD------- 127
V+DQ G+ I + + I ++ L + P+K V + D
Sbjct: 737 MVLDQHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKGK 796
Query: 128 -HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQ 186
HT +E + D PGLL+++ A+L N+ A++ T R + + + R +Q
Sbjct: 797 KHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSEAGGRLSEEQ 856
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L V Q+ D DL + A I++ G DVF V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D + ++D + +++A+
Sbjct: 861 TDADNQPLSDPQLCLRLQQAI 881
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I + F +D + V++ G I + + I+ I L P
Sbjct: 722 VAAMDQLNLNIHDARILTSSSQFTLDTYIVLEADGSPIGNNPERIEEIRSGLIAALRNPD 781
Query: 106 GHITAGAKTWPSK--------QVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
++T + P + QV +H + T +E+I DRPGLL+ + + + +
Sbjct: 782 DYLTIIQRRVPRQLKHFAFPPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDS 208
V A++ T R+ V +V D Q L L + +K + + + + S
Sbjct: 842 VQNAKIATLGERVEDVFFVTDADNQPLSDPQLCLRLQQAIIKELQQENEQQPS 894
>sp|Q9XC07|GLND_VIBF1 [Protein-PII] uridylyltransferase OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=glnD PE=3 SV=2
Length = 873
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT 94
T + V S ++P + V L + I A + SS G+ +D F V+DQ I + +
Sbjct: 692 TEIFVYSKDQPHLFATVAAELDRRSITIYDAQVMSSKDGYALDTFMVLDQNDDPIDEERQ 751
Query: 95 IDYIEKALGPK--GHITAGAKTWPSKQVGVHSV-----------GDHTAIELIGRDRPGL 141
I++ K T P +Q+ +V G T +E + D PGL
Sbjct: 752 QRLIDQLYDVKLNDQATHIKTRRPPRQLQHFNVKTRMEFLPTKTGKRTLMEFVALDTPGL 811
Query: 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201
L+ + A A L N+ AA++ T R + + D R + D+ + L +KN+ R
Sbjct: 812 LATVGATFAQLGINLHAAKITTIGERAEDLFILTSDVGGR-LDDEKQAELELALVKNVAR 870
>sp|Q6LN22|GLND_PHOPR [Protein-PII] uridylyltransferase OS=Photobacterium profundum
GN=glnD PE=3 SV=1
Length = 874
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT 94
T V V + +K + VV L +L + A I +S G+ +D F V+D GK I + +
Sbjct: 695 TEVFVYNKDKAKLFAIVVSELDKKNLSVHDAQIMNSKDGYTLDTFMVLDPSGKTIPENRH 754
Query: 95 IDYIEKAL---------------GPKGHITAGAKT----WPSKQVGVHSVGDHTAIELIG 135
+ I +AL P+ + KT P+K G T +ELI
Sbjct: 755 -NTIRRALVNALTKMKSERKNKRAPRKLMHFNVKTQVDFLPTK------TGKKTTMELIA 807
Query: 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRR 167
D PGLL+ I AV A + ++ AA++ T R
Sbjct: 808 LDTPGLLARIGAVFAKQKVSLQAAKITTIGER 839
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
P + DN T+++VD+ ++PG+L ++ + L+ ++ I A I++ G +D F+V
Sbjct: 837 PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYV 896
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G K+ + +EK L
Sbjct: 897 KDMFGLKLHQKNRQETLEKKL 917
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
D PG+ S ++ LA + NV A +T A ++ D+ + +RL + +
Sbjct: 749 DHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSEGSPY-EISRLPRLTSMI 807
Query: 197 KNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKP 256
L+G E VAR + DRD + + F
Sbjct: 808 DKTLKG------EVVAREALK----------------DRD-------KLKKREAQFRFPT 838
Query: 257 EITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316
I + Y+++ V RDR L++D+ TL + A I++ G +Y++
Sbjct: 839 HIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKD 898
Query: 317 MDGCILDTEGEKERVIKCLEAAI 339
M G L + +E + K L AI
Sbjct: 899 MFGLKLHQKNRQETLEKKLRQAI 921
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ RDRPGLL +++ LA +A+A + T+ ++ YV D + + +
Sbjct: 850 YTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFGLK-LHQKN 908
Query: 188 RLSLMEEQLKN-ILRGCD 204
R +E++L+ I+ G +
Sbjct: 909 RQETLEKKLRQAIVEGAE 926
>sp|Q2GAJ4|GLND_NOVAD [Protein-PII] uridylyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=glnD PE=3 SV=1
Length = 912
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 7 PYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKA 66
P P ++ +R P DN + TV++V + ++P +L + + L + LI+ A
Sbjct: 807 PLARPRADAFDVR---PIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSA 863
Query: 67 YISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
+I++ G +D F+V D G+K+ + +EK L
Sbjct: 864 HIATYGERAVDTFYVTDVLGEKVDSEARMKAVEKRL 899
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 255 KPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI 314
+P + + ++V+ V RDR L+ + L + + +V A I++ G A +Y+
Sbjct: 819 RPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYV 878
Query: 315 RHMDGCILDTEGEKERVIK-CLEAAIRRRVSEVS 347
+ G +D+E + V K LEAA R+V + +
Sbjct: 879 TDVLGEKVDSEARMKAVEKRLLEAAEDRKVKDAA 912
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
Query: 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGK 93
T+V V + + PG+ + + I A I ++ G +D F V D G+ + +
Sbjct: 721 ATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDPLGRPLNEAS 780
Query: 94 TIDYIEKALG----------------PKGHITAGA-KTWPSKQVGVHSVGDHTAIELIGR 136
I+ ++ A+ P A A P + T IE+ R
Sbjct: 781 QIERLKNAIADALANRVKLVPQLAARPLARPRADAFDVRPIVIFDNKASNRFTVIEVGAR 840
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
DRP LL+ ++ L R V +A + T+ R YV D V + R+ +E++L
Sbjct: 841 DRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVT-DVLGEKVDSEARMKAVEKRL 899
>sp|B5F9X8|GLND_VIBFM [Protein-PII] uridylyltransferase OS=Vibrio fischeri (strain MJ11)
GN=glnD PE=3 SV=1
Length = 873
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 15/180 (8%)
Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT 94
T + V S ++P + V L + I A + SS G+ +D F V+DQ I + +
Sbjct: 692 TEIFVYSKDQPHLFATVAAELDRRSITIYDAQVMSSKDGYALDTFMVLDQNDDPIDEERQ 751
Query: 95 IDYIEKALGPK--GHITAGAKTWPSKQVGVHSV-----------GDHTAIELIGRDRPGL 141
I++ K T P +Q+ +V G T +E + D PGL
Sbjct: 752 QRLIDQLYDVKLNDQATHIKTRRPPRQLQHFNVKTRMEFLPTKTGKRTLMEFVALDTPGL 811
Query: 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201
L+ + A A L N+ AA++ T R + + D R + D + L +KN+ R
Sbjct: 812 LATVGATFAQLGINLHAAKITTIGERAEDLFILTSDVGGR-LDDDKQAELEIALVKNVAR 870
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 52/97 (53%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + D+ + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + ++D + +++A+ + ++ PS+
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIIQQLQAGQASEASPSR 897
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQG----------KKITDGKTIDYIEKA 101
V ++ L+L I A I + F +D + V+D G K+I DG T E
Sbjct: 722 VAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLT----EAL 777
Query: 102 LGPKGHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLAN 151
P+ + + P + QV + + T +E+ DRPGLL+ I +
Sbjct: 778 RTPEDYPAIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLE 837
Query: 152 LRFNVAAAEVWTHNRRIACVLYVND 176
++ A++ T R+ V ++ D
Sbjct: 838 FDISLQNAKIATLGERVEDVFFITD 862
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ + + +V++V + ++PG+L + + D DL + A I++ G DVF++
Sbjct: 802 PQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYIT 861
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + + + D ++ AL + G T P++
Sbjct: 862 DARNQPLADPDLCKRLQAALVEQLSQDNGRDTLPTR 897
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D G I + + I I + L P
Sbjct: 722 VAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPD 781
Query: 106 GHITAGAKTWPSK----------QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + + ++ + +E+I DRPGLL+ I + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
V A++ T R+ V Y+ D
Sbjct: 842 VQNAKIATLGERVEDVFYITD 862
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ + + +V++V + ++PG+L + + D DL + A I++ G DVF++
Sbjct: 802 PQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYIT 861
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + + + D ++ AL + G T P++
Sbjct: 862 DARNQPLADPDLCKRLQAALVEQLSQDNGRDTLPTR 897
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D G I + + I I + L P
Sbjct: 722 VAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPD 781
Query: 106 GHITAGAKTWPSK----------QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + + ++ + +E+I DRPGLL+ I + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
V A++ T R+ V Y+ D
Sbjct: 842 VQNAKIATLGERVEDVFYITD 862
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ + + +V++V + ++PG+L + + D DL + A I++ G DVF++
Sbjct: 802 PQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYIT 861
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + + + D ++ AL + G T P++
Sbjct: 862 DARNQPLADPDLCKRLQAALVEQLSQDNGRDTLPTR 897
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D G I + + I I + L P
Sbjct: 722 VAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPD 781
Query: 106 GHITAGAKTWPSK----------QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + + ++ + +E+I DRPGLL+ I + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
V A++ T R+ V Y+ D
Sbjct: 842 VQNAKIATLGERVEDVFYITD 862
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ + + +V++V + ++PG+L + + D DL + A I++ G DVF++
Sbjct: 802 PQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYIT 861
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + + + D ++ AL + G T P++
Sbjct: 862 DARNQPLADPDLCKRLQAALVEQLSQDNGRDTLPTR 897
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D G I + + I I + L P
Sbjct: 722 VAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPD 781
Query: 106 GHITAGAKTWPSK----------QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + + ++ + +E+I DRPGLL+ I + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
V A++ T R+ V Y+ D
Sbjct: 842 VQNAKIATLGERVEDVFYITD 862
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 50/93 (53%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D + ++D + +++A+ + G+ T
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIVQQLQAGQGSDT 893
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQG----------KKITDGKTIDYIEKA 101
V +S L+L I A I + F +D + V+D G K+I DG T E
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLT----EAL 777
Query: 102 LGPKGHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLAN 151
P+ + T + P + QV + + T +E+ DRPGLL+ + +
Sbjct: 778 RNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLE 837
Query: 152 LRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKV 211
++ A++ T R+ V ++ D + + D S ++E + L+ D+ +
Sbjct: 838 FDLSLQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSQT 896
Query: 212 ARTSF 216
R +F
Sbjct: 897 -RVTF 900
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 46/81 (56%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D + ++D + +++A+
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQG----------KKITDGKTIDYIEKA 101
V +S L+L I A I + F +D + V+D G K+I DG T E
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLT----EAL 777
Query: 102 LGPKGHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLAN 151
P+ + T + P + QV + + T +E+ DRPGLL+ I +
Sbjct: 778 RNPEDYPTIIQRRVPRQLKHFNFPPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLE 837
Query: 152 LRFNVAAAEVWTHNRRIACVLYVND 176
++ A++ T R+ V ++ D
Sbjct: 838 FDLSLQNAKIATLGERVEDVFFITD 862
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 50/93 (53%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D + ++D + +++A+ + G+ T
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIVQQLQAGQGSDT 893
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQG----------KKITDGKTIDYIEKA 101
V +S L+L I A I + F +D + V+D G K+I DG T E
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLT----EAL 777
Query: 102 LGPKGHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLAN 151
P+ + T + P + QV + + T +E+ DRPGLL+ + +
Sbjct: 778 RNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLE 837
Query: 152 LRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKV 211
++ A++ T R+ V ++ D + + D S ++E + L+ D+ +
Sbjct: 838 FDLSLQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSQT 896
Query: 212 ARTSF 216
R +F
Sbjct: 897 -RVTF 900
>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
CMCP6) GN=glnD PE=3 SV=1
Length = 873
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 17/195 (8%)
Query: 21 NP--PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMD 77
NP P + + T V V + ++ + VV L + + A I SS G+ +D
Sbjct: 675 NPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKDGYVLD 734
Query: 78 VFHVIDQQGKKI---TDGKTIDYIEKALGPKGHITAGAKTWPSK--QVGVHSVGD----- 127
F V+DQ G+ I I ++ L + P K V + D
Sbjct: 735 TFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVDFLPTK 794
Query: 128 ---HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVG 184
T +EL+ D PGLL+ A A++ FN+ A++ T R + + + R +
Sbjct: 795 SKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENGGR-LS 853
Query: 185 DQTRLSLMEEQLKNI 199
++ L L E+ + NI
Sbjct: 854 EEQELQLREKLIHNI 868
>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1
Length = 856
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDG 92
E V + S +KP + + I A + ++ G+ +D FHV +
Sbjct: 676 EGLQVLIYSPDKPELFARACAFFGRTNYSIADAKVYTTRHGYALDTFHVFVPEHHDGDYR 735
Query: 93 KTIDYIEKALG------------PKGHITAGAKTWP-SKQVGVHSVGDHT--AIELIGRD 137
I++IE L P+G I+ K +P + QV + + + ++ D
Sbjct: 736 DMINFIEFELAAALATDQPLQLPPQGRISRHLKHFPITPQVSIRPDDKDSDFILSIVAGD 795
Query: 138 RPGLLSEISAVLANLRFNVAAAEVWT 163
RPGLL+ I+ VLA+ R NV +A++ T
Sbjct: 796 RPGLLARIAKVLADYRLNVRSAKIMT 821
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ S+ ++ + + ++PG+L + +VL+D L + A I + GG D F V
Sbjct: 774 PQVSIRPDDKDSDFILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQV- 832
Query: 83 DQQGKKITDGKTIDYIEKAL 102
G + D KT +E AL
Sbjct: 833 --SGAALKDDKTALALEAAL 850
>sp|C6DAI1|GLND_PECCP [Protein-PII] uridylyltransferase OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=glnD PE=3 SV=1
Length = 904
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 20 INPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDV 78
+N P + + + T + + S ++P + V L +L + A I +S G MD
Sbjct: 703 VNKPLVLISHQASRGGTEIFIWSPDRPYLFAAVAGELDRRNLSVHDAQIFTSRDGMAMDT 762
Query: 79 FHVIDQQGKKITDGK--TIDY-IEKALGPKGHITAGAKTWPSKQVG-------VHSVGDH 128
F V++ G + + I + +E+AL + H PS ++ V+ + H
Sbjct: 763 FIVLEPDGSPLAQDRHEMIRHALEQALTQR-HYQHPRVRRPSPKLRHFSVPTEVNFLPTH 821
Query: 129 T----AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVG 184
T +EL D+PGLL+ I + A+L ++ A + T R+ L++ D+ RA+
Sbjct: 822 TDRRSYMELSALDQPGLLARIGEIFADLNLSLHGARISTIGERVED-LFILADSDRRALK 880
Query: 185 DQTRLSLME 193
+ RL L E
Sbjct: 881 PELRLKLQE 889
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,186,699
Number of Sequences: 539616
Number of extensions: 5502788
Number of successful extensions: 12818
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 12456
Number of HSP's gapped (non-prelim): 416
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)