Query 018281
Match_columns 358
No_of_seqs 226 out of 2044
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 3E-31 6.4E-36 282.5 24.4 197 1-200 638-853 (854)
2 PRK01759 glnD PII uridylyl-tra 100.0 4.5E-31 9.8E-36 281.1 25.1 185 120-340 669-854 (854)
3 PRK05007 PII uridylyl-transfer 100.0 9.9E-31 2.1E-35 279.4 26.3 187 120-341 693-880 (884)
4 PRK05007 PII uridylyl-transfer 100.0 8.6E-31 1.9E-35 279.9 24.8 199 1-202 661-880 (884)
5 PRK00275 glnD PII uridylyl-tra 100.0 2.1E-30 4.6E-35 276.9 25.8 202 1-203 660-888 (895)
6 PRK04374 PII uridylyl-transfer 100.0 7E-29 1.5E-33 263.8 25.9 199 1-201 649-867 (869)
7 PRK03059 PII uridylyl-transfer 100.0 6.4E-29 1.4E-33 264.5 24.4 196 1-201 637-855 (856)
8 TIGR01693 UTase_glnD [Protein- 100.0 1.2E-28 2.6E-33 263.9 24.9 198 1-200 627-849 (850)
9 PRK05092 PII uridylyl-transfer 100.0 3.3E-28 7.1E-33 262.2 25.7 202 1-203 690-917 (931)
10 TIGR01693 UTase_glnD [Protein- 100.0 3.5E-28 7.6E-33 260.3 25.4 186 122-339 662-849 (850)
11 PRK00275 glnD PII uridylyl-tra 100.0 1E-27 2.3E-32 256.3 25.5 188 126-345 702-891 (895)
12 PRK04374 PII uridylyl-transfer 100.0 7.8E-27 1.7E-31 248.2 24.8 181 123-340 685-867 (869)
13 PRK05092 PII uridylyl-transfer 100.0 2.2E-26 4.7E-31 248.1 27.0 194 121-344 725-919 (931)
14 COG2844 GlnD UTP:GlnB (protein 99.9 7.9E-27 1.7E-31 237.1 20.9 198 1-201 644-862 (867)
15 COG2844 GlnD UTP:GlnB (protein 99.9 1.8E-26 4E-31 234.5 21.5 187 122-343 678-865 (867)
16 PRK03381 PII uridylyl-transfer 99.9 8.3E-26 1.8E-30 238.7 23.5 180 122-336 594-773 (774)
17 PRK03059 PII uridylyl-transfer 99.9 2.2E-25 4.8E-30 237.5 25.5 183 122-340 672-855 (856)
18 PRK03381 PII uridylyl-transfer 99.9 5.8E-25 1.3E-29 232.3 23.3 173 21-197 586-773 (774)
19 cd04897 ACT_ACR_3 ACT domain-c 99.9 2.6E-23 5.7E-28 155.6 10.8 75 268-342 1-75 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.9 1.1E-21 2.4E-26 145.7 9.7 69 268-336 1-69 (72)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 1.3E-20 2.8E-25 141.0 10.2 71 269-340 1-73 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.1E-17 2.5E-22 125.2 11.0 74 128-202 1-74 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 8.5E-17 1.8E-21 119.6 10.3 69 128-197 1-69 (72)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 5.1E-16 1.1E-20 116.3 10.5 72 129-202 1-74 (75)
25 PRK11589 gcvR glycine cleavage 99.6 4.6E-15 1E-19 131.3 14.7 161 125-340 5-167 (190)
26 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.8E-15 3.9E-20 114.0 10.2 72 269-340 1-73 (74)
27 PRK11589 gcvR glycine cleavage 99.6 5.8E-15 1.3E-19 130.6 13.9 153 32-201 5-167 (190)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 6.7E-15 1.5E-19 110.9 10.9 72 129-201 1-73 (74)
29 cd04927 ACT_ACR-like_2 Second 99.6 5.9E-15 1.3E-19 111.8 10.6 71 270-341 2-73 (76)
30 cd04900 ACT_UUR-like_1 ACT dom 99.6 4.4E-15 9.6E-20 111.6 9.6 69 36-104 2-71 (73)
31 cd04900 ACT_UUR-like_1 ACT dom 99.6 6.2E-15 1.3E-19 110.8 9.7 71 269-339 2-73 (73)
32 cd04927 ACT_ACR-like_2 Second 99.5 7.3E-14 1.6E-18 105.8 10.9 71 130-202 2-73 (76)
33 cd04928 ACT_TyrKc Uncharacteri 99.5 8.3E-14 1.8E-18 102.2 9.6 52 36-87 2-54 (68)
34 COG2716 GcvR Glycine cleavage 99.5 4.2E-13 9.2E-18 114.0 10.6 157 32-201 2-164 (176)
35 cd04926 ACT_ACR_4 C-terminal 99.4 5E-12 1.1E-16 94.7 10.2 68 36-104 2-69 (72)
36 PRK00227 glnD PII uridylyl-tra 99.4 9.5E-12 2.1E-16 129.5 15.9 144 129-340 547-691 (693)
37 COG2716 GcvR Glycine cleavage 99.4 6E-12 1.3E-16 107.0 11.3 160 125-339 2-163 (176)
38 cd04926 ACT_ACR_4 C-terminal 99.3 1.3E-11 2.7E-16 92.5 9.8 67 269-336 2-68 (72)
39 cd04928 ACT_TyrKc Uncharacteri 99.3 1.5E-11 3.3E-16 90.3 9.7 65 129-200 2-67 (68)
40 PRK00227 glnD PII uridylyl-tra 99.3 4.6E-11 1E-15 124.4 15.8 144 36-201 547-691 (693)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 2.3E-11 5E-16 90.1 9.9 70 269-339 1-70 (70)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.2E-10 2.7E-15 86.1 10.1 69 129-199 1-69 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 99.0 4.1E-09 8.9E-14 77.6 9.8 69 269-338 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.8E-08 4E-13 74.0 10.1 69 129-199 1-69 (70)
45 PF13740 ACT_6: ACT domain; PD 98.8 7.4E-08 1.6E-12 72.8 9.8 65 128-200 2-66 (76)
46 PF13740 ACT_6: ACT domain; PD 98.7 1.3E-07 2.8E-12 71.5 10.2 62 35-103 2-63 (76)
47 cd04870 ACT_PSP_1 CT domains f 98.5 3.1E-07 6.8E-12 69.1 7.3 64 130-200 1-64 (75)
48 cd04893 ACT_GcvR_1 ACT domains 98.5 5.1E-07 1.1E-11 68.3 8.4 47 36-82 2-48 (77)
49 COG4747 ACT domain-containing 98.5 3.9E-06 8.5E-11 67.2 13.0 113 37-176 5-118 (142)
50 cd04893 ACT_GcvR_1 ACT domains 98.5 8E-07 1.7E-11 67.3 8.9 62 129-198 2-63 (77)
51 PF01842 ACT: ACT domain; Int 98.5 1.5E-06 3.3E-11 62.9 9.8 63 269-337 1-63 (66)
52 cd04894 ACT_ACR-like_1 ACT dom 98.5 6.3E-07 1.4E-11 63.4 6.4 66 36-104 1-66 (69)
53 PF01842 ACT: ACT domain; Int 98.4 2.8E-06 6.2E-11 61.4 9.5 61 129-198 1-63 (66)
54 cd04870 ACT_PSP_1 CT domains f 98.4 1.4E-06 3.1E-11 65.5 7.5 50 37-86 1-50 (75)
55 cd04872 ACT_1ZPV ACT domain pr 98.2 3.1E-06 6.8E-11 65.6 6.8 66 129-200 2-67 (88)
56 PRK00194 hypothetical protein; 98.1 8.8E-06 1.9E-10 63.3 7.3 66 128-199 3-68 (90)
57 cd04872 ACT_1ZPV ACT domain pr 98.1 7.5E-06 1.6E-10 63.5 6.6 49 36-84 2-50 (88)
58 cd04875 ACT_F4HF-DF N-terminal 98.1 1.6E-05 3.4E-10 59.5 8.0 65 130-200 1-67 (74)
59 cd04869 ACT_GcvR_2 ACT domains 98.1 1.5E-05 3.4E-10 60.4 7.9 64 130-200 1-70 (81)
60 cd04875 ACT_F4HF-DF N-terminal 98.1 2.1E-05 4.5E-10 58.8 8.3 34 37-70 1-34 (74)
61 PRK00194 hypothetical protein; 98.1 1.3E-05 2.7E-10 62.4 7.1 48 35-82 3-50 (90)
62 cd04869 ACT_GcvR_2 ACT domains 98.0 2.8E-05 6.1E-10 58.9 8.3 48 37-84 1-54 (81)
63 cd04894 ACT_ACR-like_1 ACT dom 98.0 2E-05 4.4E-10 55.8 6.1 67 129-199 1-67 (69)
64 PRK13010 purU formyltetrahydro 98.0 0.00012 2.6E-09 69.3 13.3 43 34-76 8-52 (289)
65 TIGR00655 PurU formyltetrahydr 98.0 0.00023 5.1E-09 67.1 14.7 46 37-82 2-49 (280)
66 PF13291 ACT_4: ACT domain; PD 97.9 7.6E-05 1.6E-09 56.6 9.1 62 269-336 7-70 (80)
67 COG4747 ACT domain-containing 97.9 0.0012 2.7E-08 53.1 15.8 111 130-314 5-116 (142)
68 PF13291 ACT_4: ACT domain; PD 97.8 0.00023 4.9E-09 53.9 8.8 63 128-197 6-70 (80)
69 COG3830 ACT domain-containing 97.7 5.1E-05 1.1E-09 58.2 4.8 68 128-201 3-70 (90)
70 PRK06027 purU formyltetrahydro 97.7 0.00016 3.5E-09 68.4 9.3 69 126-200 4-74 (286)
71 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00047 1E-08 51.1 8.7 60 271-336 2-62 (74)
72 PRK06027 purU formyltetrahydro 97.6 0.0017 3.6E-08 61.6 14.4 49 34-82 5-55 (286)
73 COG0788 PurU Formyltetrahydrof 97.6 0.00022 4.7E-09 65.4 7.7 43 34-76 6-50 (287)
74 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00081 1.7E-08 49.8 9.5 60 131-197 2-62 (74)
75 PRK13011 formyltetrahydrofolat 97.6 0.0024 5.2E-08 60.4 14.6 51 34-84 6-58 (286)
76 PRK07431 aspartate kinase; Pro 97.5 0.11 2.4E-06 54.3 27.4 220 33-339 346-580 (587)
77 PRK13011 formyltetrahydrofolat 97.5 0.0006 1.3E-08 64.5 9.6 68 127-201 6-75 (286)
78 PRK13010 purU formyltetrahydro 97.5 0.00047 1E-08 65.3 8.8 69 127-200 8-78 (289)
79 cd04877 ACT_TyrR N-terminal AC 97.5 0.00067 1.5E-08 50.6 7.7 57 271-336 3-59 (74)
80 COG3830 ACT domain-containing 97.4 0.00011 2.3E-09 56.5 2.7 48 35-82 3-50 (90)
81 TIGR00655 PurU formyltetrahydr 97.4 0.001 2.2E-08 62.7 9.2 66 130-201 2-69 (280)
82 PRK07431 aspartate kinase; Pro 97.3 0.1 2.2E-06 54.5 24.2 192 42-302 278-474 (587)
83 cd04886 ACT_ThrD-II-like C-ter 97.3 0.0032 6.9E-08 45.7 9.2 61 131-198 1-66 (73)
84 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0027 6E-08 46.1 8.5 34 271-304 1-34 (73)
85 PRK08178 acetolactate synthase 97.2 0.0016 3.5E-08 50.9 7.3 78 265-354 6-83 (96)
86 COG0788 PurU Formyltetrahydrof 97.2 0.0024 5.3E-08 58.7 8.9 66 127-198 6-73 (287)
87 CHL00100 ilvH acetohydroxyacid 97.1 0.0035 7.5E-08 54.9 9.5 65 129-201 3-69 (174)
88 PRK06737 acetolactate synthase 97.1 0.0037 8E-08 47.0 8.1 62 129-198 3-66 (76)
89 cd04877 ACT_TyrR N-terminal AC 97.1 0.0033 7.3E-08 46.8 8.0 35 130-164 2-36 (74)
90 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0038 8.1E-08 45.4 8.0 44 270-315 3-46 (66)
91 cd04909 ACT_PDH-BS C-terminal 97.1 0.0038 8.3E-08 45.5 7.9 60 270-337 3-64 (69)
92 PRK13562 acetolactate synthase 97.1 0.0037 8E-08 47.7 7.8 63 129-198 3-67 (84)
93 cd04888 ACT_PheB-BS C-terminal 97.0 0.0044 9.5E-08 46.0 8.0 61 270-336 2-64 (76)
94 PRK06737 acetolactate synthase 97.0 0.0036 7.8E-08 47.1 7.4 64 270-339 4-68 (76)
95 PRK08178 acetolactate synthase 97.0 0.0047 1E-07 48.4 8.2 38 126-163 6-43 (96)
96 CHL00100 ilvH acetohydroxyacid 97.0 0.0038 8.3E-08 54.6 8.6 66 270-340 4-69 (174)
97 cd04889 ACT_PDH-BS-like C-term 97.0 0.0023 5E-08 44.8 6.0 46 38-83 1-47 (56)
98 cd04888 ACT_PheB-BS C-terminal 97.0 0.0066 1.4E-07 45.0 8.8 61 130-197 2-64 (76)
99 cd04889 ACT_PDH-BS-like C-term 97.0 0.0026 5.6E-08 44.5 6.2 46 131-176 1-47 (56)
100 cd04878 ACT_AHAS N-terminal AC 97.0 0.0071 1.5E-07 43.7 8.5 59 271-336 3-63 (72)
101 cd04898 ACT_ACR-like_4 ACT dom 96.9 0.0018 3.9E-08 47.9 4.8 70 270-339 2-74 (77)
102 cd04909 ACT_PDH-BS C-terminal 96.9 0.0087 1.9E-07 43.6 8.7 36 129-164 2-37 (69)
103 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0045 9.8E-08 45.0 6.9 46 129-176 2-47 (66)
104 cd04905 ACT_CM-PDT C-terminal 96.9 0.0088 1.9E-07 45.2 8.6 50 270-320 3-53 (80)
105 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.8 0.0083 1.8E-07 44.2 8.1 61 270-336 2-64 (79)
106 TIGR00119 acolac_sm acetolacta 96.8 0.01 2.2E-07 51.1 9.2 64 129-200 2-67 (157)
107 PRK13562 acetolactate synthase 96.7 0.0075 1.6E-07 46.1 7.2 62 37-104 4-67 (84)
108 cd04879 ACT_3PGDH-like ACT_3PG 96.7 0.007 1.5E-07 43.5 6.9 44 271-314 2-47 (71)
109 PRK11895 ilvH acetolactate syn 96.7 0.013 2.9E-07 50.6 9.6 64 129-200 3-68 (161)
110 cd04882 ACT_Bt0572_2 C-termina 96.7 0.0062 1.3E-07 43.5 6.5 46 270-315 1-46 (65)
111 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.014 3E-07 43.0 8.6 45 130-174 2-48 (79)
112 cd04878 ACT_AHAS N-terminal AC 96.6 0.022 4.9E-07 41.0 9.0 46 130-175 2-49 (72)
113 TIGR00119 acolac_sm acetolacta 96.6 0.012 2.6E-07 50.7 8.5 65 270-339 3-67 (157)
114 PRK11152 ilvM acetolactate syn 96.6 0.013 2.8E-07 44.1 7.4 61 129-198 4-66 (76)
115 PRK08577 hypothetical protein; 96.6 0.05 1.1E-06 45.6 11.8 41 265-305 53-93 (136)
116 PRK11895 ilvH acetolactate syn 96.5 0.016 3.5E-07 50.1 8.8 66 270-340 4-69 (161)
117 cd04903 ACT_LSD C-terminal ACT 96.5 0.014 3E-07 42.1 7.3 33 271-303 2-34 (71)
118 cd04874 ACT_Af1403 N-terminal 96.5 0.022 4.9E-07 41.1 8.4 47 130-176 2-49 (72)
119 PRK04435 hypothetical protein; 96.5 0.045 9.7E-07 46.6 11.3 82 263-355 64-147 (147)
120 cd04903 ACT_LSD C-terminal ACT 96.5 0.02 4.3E-07 41.2 7.7 44 38-81 2-47 (71)
121 cd04879 ACT_3PGDH-like ACT_3PG 96.4 0.012 2.6E-07 42.3 6.4 44 131-174 2-47 (71)
122 cd04901 ACT_3PGDH C-terminal A 96.4 0.0036 7.9E-08 45.5 3.4 44 38-81 2-45 (69)
123 cd02116 ACT ACT domains are co 96.3 0.023 5E-07 37.8 7.2 36 271-306 1-36 (60)
124 cd04931 ACT_PAH ACT domain of 96.3 0.042 9E-07 42.8 9.2 70 267-340 13-83 (90)
125 cd04901 ACT_3PGDH C-terminal A 96.3 0.0037 7.9E-08 45.5 2.9 44 271-314 2-45 (69)
126 cd04874 ACT_Af1403 N-terminal 96.3 0.022 4.8E-07 41.2 7.1 45 37-81 2-47 (72)
127 PRK04435 hypothetical protein; 96.3 0.041 8.8E-07 46.9 9.6 76 24-104 58-134 (147)
128 cd04905 ACT_CM-PDT C-terminal 96.3 0.065 1.4E-06 40.4 9.8 48 129-176 2-50 (80)
129 PRK11152 ilvM acetolactate syn 96.3 0.023 5E-07 42.7 7.1 61 270-338 5-67 (76)
130 cd04876 ACT_RelA-SpoT ACT dom 96.2 0.037 8.1E-07 38.8 8.1 35 271-305 1-35 (71)
131 PRK08577 hypothetical protein; 96.2 0.055 1.2E-06 45.4 10.3 53 124-176 52-106 (136)
132 cd04876 ACT_RelA-SpoT ACT dom 96.2 0.058 1.2E-06 37.8 8.9 46 131-176 1-47 (71)
133 cd04902 ACT_3PGDH-xct C-termin 96.2 0.022 4.7E-07 41.7 6.6 45 38-82 2-48 (73)
134 cd04884 ACT_CBS C-terminal ACT 96.1 0.047 1E-06 40.2 8.0 33 131-163 2-34 (72)
135 cd04902 ACT_3PGDH-xct C-termin 96.0 0.033 7.1E-07 40.7 7.0 46 131-176 2-49 (73)
136 PRK06635 aspartate kinase; Rev 96.0 0.19 4E-06 50.0 14.3 107 36-159 263-374 (404)
137 cd04884 ACT_CBS C-terminal ACT 95.9 0.04 8.7E-07 40.5 7.2 34 271-304 2-35 (72)
138 PRK07334 threonine dehydratase 95.9 0.04 8.7E-07 54.8 9.4 63 269-337 327-394 (403)
139 cd04882 ACT_Bt0572_2 C-termina 95.9 0.02 4.3E-07 40.9 5.3 35 130-164 1-35 (65)
140 cd04883 ACT_AcuB C-terminal AC 95.8 0.085 1.8E-06 38.5 8.4 47 129-175 2-50 (72)
141 TIGR00656 asp_kin_monofn aspar 95.8 0.31 6.8E-06 48.3 15.0 106 34-158 259-370 (401)
142 PF13710 ACT_5: ACT domain; PD 95.8 0.033 7.2E-07 40.2 6.0 54 137-198 1-56 (63)
143 cd04904 ACT_AAAH ACT domain of 95.6 0.072 1.6E-06 39.7 7.4 48 271-319 3-51 (74)
144 PRK10872 relA (p)ppGpp synthet 95.6 0.077 1.7E-06 56.5 10.1 73 258-336 655-730 (743)
145 cd02116 ACT ACT domains are co 95.4 0.068 1.5E-06 35.4 6.2 35 131-165 1-35 (60)
146 cd04883 ACT_AcuB C-terminal AC 95.4 0.076 1.7E-06 38.7 6.9 47 36-82 2-50 (72)
147 cd04898 ACT_ACR-like_4 ACT dom 95.3 0.046 9.9E-07 40.5 5.1 70 131-200 3-74 (77)
148 PRK07334 threonine dehydratase 95.2 0.14 2.9E-06 51.0 10.2 66 126-198 324-394 (403)
149 cd04880 ACT_AAAH-PDT-like ACT 95.2 0.17 3.7E-06 37.5 8.4 49 271-320 2-51 (75)
150 PF13710 ACT_5: ACT domain; PD 95.2 0.047 1E-06 39.5 5.1 56 277-337 1-56 (63)
151 cd04929 ACT_TPH ACT domain of 95.2 0.13 2.8E-06 38.5 7.6 50 271-321 3-53 (74)
152 PRK06635 aspartate kinase; Rev 95.1 1.4 3E-05 43.7 16.9 109 128-300 262-375 (404)
153 TIGR00656 asp_kin_monofn aspar 95.0 2.5 5.5E-05 41.8 18.4 108 126-299 258-371 (401)
154 cd04871 ACT_PSP_2 ACT domains 94.9 0.024 5.1E-07 43.5 3.0 73 270-352 1-83 (84)
155 cd04880 ACT_AAAH-PDT-like ACT 94.8 0.38 8.3E-06 35.5 9.3 46 131-176 2-48 (75)
156 PRK11092 bifunctional (p)ppGpp 94.8 0.17 3.8E-06 53.7 10.0 73 258-336 615-689 (702)
157 cd04871 ACT_PSP_2 ACT domains 94.8 0.022 4.8E-07 43.6 2.5 61 130-198 1-71 (84)
158 TIGR00691 spoT_relA (p)ppGpp s 94.5 0.23 5.1E-06 52.7 10.2 73 258-336 599-673 (683)
159 cd04885 ACT_ThrD-I Tandem C-te 94.5 0.32 6.9E-06 35.4 8.0 59 132-198 2-61 (68)
160 PRK06291 aspartate kinase; Pro 94.4 1.4 3.1E-05 44.7 15.2 106 34-158 320-431 (465)
161 PRK08210 aspartate kinase I; R 94.3 1.8 4E-05 42.9 15.4 99 34-158 270-372 (403)
162 cd04885 ACT_ThrD-I Tandem C-te 94.2 0.35 7.5E-06 35.2 7.7 59 272-336 2-60 (68)
163 PF13840 ACT_7: ACT domain ; P 94.1 0.21 4.5E-06 36.2 6.3 45 267-316 5-53 (65)
164 cd04930 ACT_TH ACT domain of t 93.9 0.3 6.4E-06 39.8 7.4 52 268-320 41-93 (115)
165 cd04931 ACT_PAH ACT domain of 93.9 0.94 2E-05 35.2 9.9 50 127-176 13-63 (90)
166 PRK11899 prephenate dehydratas 93.8 0.28 6E-06 46.3 8.1 53 268-321 194-247 (279)
167 PRK10872 relA (p)ppGpp synthet 93.8 0.36 7.7E-06 51.5 9.7 63 128-197 666-730 (743)
168 PRK11092 bifunctional (p)ppGpp 93.6 0.52 1.1E-05 50.2 10.6 74 25-104 615-690 (702)
169 COG0317 SpoT Guanosine polypho 93.5 0.47 1E-05 50.0 9.8 51 257-307 615-666 (701)
170 PRK09034 aspartate kinase; Rev 93.5 2.5 5.4E-05 42.8 14.9 108 35-161 308-421 (454)
171 COG0077 PheA Prephenate dehydr 93.1 0.43 9.3E-06 44.8 8.1 54 267-321 193-247 (279)
172 PRK06291 aspartate kinase; Pro 93.1 8.4 0.00018 39.1 18.0 111 126-302 319-435 (465)
173 TIGR00719 sda_beta L-serine de 93.0 0.51 1.1E-05 42.5 8.2 53 123-175 143-197 (208)
174 cd04904 ACT_AAAH ACT domain of 92.7 1.1 2.3E-05 33.3 8.3 46 131-176 3-49 (74)
175 PRK08210 aspartate kinase I; R 92.6 8.6 0.00019 38.1 17.1 35 127-161 270-305 (403)
176 TIGR00691 spoT_relA (p)ppGpp s 92.5 0.93 2E-05 48.3 10.5 74 25-104 599-674 (683)
177 PF13840 ACT_7: ACT domain ; P 92.3 0.56 1.2E-05 33.9 6.2 46 126-176 4-53 (65)
178 COG1707 ACT domain-containing 92.2 0.47 1E-05 40.8 6.4 47 130-176 4-52 (218)
179 KOG2663 Acetolactate synthase, 92.2 0.15 3.3E-06 46.6 3.6 50 34-83 76-127 (309)
180 COG1707 ACT domain-containing 92.2 0.42 9E-06 41.2 6.0 37 37-73 4-41 (218)
181 cd04929 ACT_TPH ACT domain of 92.1 1.6 3.5E-05 32.5 8.5 46 131-176 3-49 (74)
182 PRK09436 thrA bifunctional asp 91.8 15 0.00031 40.2 18.8 114 125-300 312-431 (819)
183 PRK06382 threonine dehydratase 91.5 1.5 3.3E-05 43.6 10.2 68 124-198 326-398 (406)
184 PRK09034 aspartate kinase; Rev 91.4 14 0.00031 37.3 17.2 37 267-303 384-423 (454)
185 TIGR00657 asp_kinases aspartat 91.4 8.5 0.00018 38.7 15.6 108 34-160 301-413 (441)
186 cd04906 ACT_ThrD-I_1 First of 91.2 2.5 5.3E-05 32.2 9.0 61 130-198 3-64 (85)
187 TIGR00719 sda_beta L-serine de 91.2 0.83 1.8E-05 41.2 7.3 48 34-81 147-196 (208)
188 COG0527 LysC Aspartokinases [A 91.2 13 0.00028 37.6 16.5 120 33-176 305-430 (447)
189 PRK09436 thrA bifunctional asp 91.0 4.8 0.0001 43.9 14.2 113 33-160 313-431 (819)
190 PRK08818 prephenate dehydrogen 90.6 0.57 1.2E-05 46.0 6.1 50 267-317 294-344 (370)
191 COG0317 SpoT Guanosine polypho 90.6 1.3 2.8E-05 46.9 8.9 64 127-197 626-690 (701)
192 cd04906 ACT_ThrD-I_1 First of 90.5 2.5 5.5E-05 32.1 8.5 60 270-336 3-63 (85)
193 PRK10622 pheA bifunctional cho 90.3 1.3 2.8E-05 43.9 8.3 53 268-321 297-350 (386)
194 PRK11790 D-3-phosphoglycerate 90.0 0.64 1.4E-05 46.4 6.0 49 127-175 337-385 (409)
195 PRK06382 threonine dehydratase 89.9 1.8 4E-05 43.0 9.2 65 266-336 328-397 (406)
196 PLN02551 aspartokinase 89.8 16 0.00035 37.7 16.1 135 34-200 365-507 (521)
197 PRK09181 aspartate kinase; Val 89.5 5.1 0.00011 40.8 12.1 103 34-159 328-435 (475)
198 COG0440 IlvH Acetolactate synt 89.4 1.2 2.7E-05 38.3 6.4 66 128-201 4-71 (163)
199 PRK06545 prephenate dehydrogen 88.7 1.5 3.3E-05 42.9 7.5 50 267-316 289-338 (359)
200 PRK06545 prephenate dehydrogen 88.6 1.9 4.1E-05 42.1 8.1 52 125-176 287-338 (359)
201 PRK08198 threonine dehydratase 88.5 4.1 8.9E-05 40.4 10.6 38 125-162 324-361 (404)
202 PRK09084 aspartate kinase III; 88.4 23 0.0005 35.8 16.0 103 34-154 305-413 (448)
203 PRK06349 homoserine dehydrogen 88.2 1.9 4.1E-05 43.2 8.0 47 270-316 350-396 (426)
204 PRK11790 D-3-phosphoglycerate 88.2 0.78 1.7E-05 45.7 5.2 61 34-99 337-397 (409)
205 KOG2663 Acetolactate synthase, 88.1 1.4 3E-05 40.5 6.1 50 127-176 76-127 (309)
206 PRK11899 prephenate dehydratas 88.0 4.4 9.6E-05 38.2 9.8 49 128-176 194-243 (279)
207 cd04930 ACT_TH ACT domain of t 87.8 2 4.4E-05 34.9 6.5 49 128-176 41-90 (115)
208 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.3 6.2 0.00014 27.7 8.2 34 270-303 3-39 (66)
209 TIGR01127 ilvA_1Cterm threonin 86.6 6.2 0.00013 38.8 10.4 67 125-198 302-373 (380)
210 COG3978 Acetolactate synthase 86.3 6 0.00013 29.8 7.6 64 128-200 3-68 (86)
211 PF05088 Bac_GDH: Bacterial NA 85.9 6.1 0.00013 45.7 11.0 102 2-103 447-562 (1528)
212 cd04932 ACT_AKiii-LysC-EC_1 AC 85.7 6.7 0.00015 29.1 7.9 26 275-300 11-36 (75)
213 PRK06349 homoserine dehydrogen 85.6 4.3 9.4E-05 40.7 8.9 52 125-176 345-396 (426)
214 cd04935 ACT_AKiii-DAPDC_1 ACT 84.7 9.6 0.00021 28.3 8.3 56 275-337 11-67 (75)
215 PRK08818 prephenate dehydrogen 84.4 2.5 5.5E-05 41.5 6.4 49 127-176 294-343 (370)
216 COG0440 IlvH Acetolactate synt 84.4 3.7 8E-05 35.4 6.6 62 36-104 5-68 (163)
217 PRK08198 threonine dehydratase 84.1 6.3 0.00014 39.1 9.2 36 34-69 326-361 (404)
218 PRK08961 bifunctional aspartat 83.7 39 0.00084 37.2 15.8 103 34-156 321-429 (861)
219 PRK09466 metL bifunctional asp 83.6 62 0.0013 35.4 17.0 103 34-158 316-424 (810)
220 PRK12483 threonine dehydratase 83.1 34 0.00073 35.3 14.2 118 33-157 343-470 (521)
221 COG0077 PheA Prephenate dehydr 83.1 8.7 0.00019 36.2 9.1 65 127-198 193-258 (279)
222 COG2150 Predicted regulator of 83.1 2 4.3E-05 36.8 4.3 35 34-68 92-128 (167)
223 PRK13581 D-3-phosphoglycerate 83.0 3.2 7E-05 42.8 6.8 52 123-174 447-500 (526)
224 cd04922 ACT_AKi-HSDH-ThrA_2 AC 82.9 14 0.00029 25.8 8.8 32 130-161 3-37 (66)
225 cd04919 ACT_AK-Hom3_2 ACT doma 82.9 12 0.00026 26.2 8.1 34 270-303 3-39 (66)
226 cd04913 ACT_AKii-LysC-BS-like_ 81.9 10 0.00023 26.9 7.5 27 275-301 9-35 (75)
227 PRK09224 threonine dehydratase 81.8 52 0.0011 33.8 15.0 122 34-162 327-456 (504)
228 TIGR00657 asp_kinases aspartat 81.5 62 0.0013 32.5 18.5 34 267-300 377-413 (441)
229 cd04937 ACT_AKi-DapG-BS_2 ACT 81.2 17 0.00036 25.7 8.4 28 130-157 3-33 (64)
230 TIGR01327 PGDH D-3-phosphoglyc 81.2 3.1 6.7E-05 42.9 5.9 50 125-174 448-499 (525)
231 cd04924 ACT_AK-Arch_2 ACT doma 80.9 15 0.00033 25.5 8.0 59 270-339 3-64 (66)
232 TIGR01127 ilvA_1Cterm threonin 80.9 10 0.00022 37.3 9.2 61 270-336 307-372 (380)
233 COG4492 PheB ACT domain-contai 80.7 11 0.00024 31.3 7.7 67 126-198 70-137 (150)
234 PRK11898 prephenate dehydratas 80.6 9.2 0.0002 36.2 8.5 53 268-321 196-250 (283)
235 PLN02551 aspartokinase 80.0 78 0.0017 32.7 17.8 139 125-339 363-507 (521)
236 PRK13581 D-3-phosphoglycerate 79.8 4.1 9E-05 42.0 6.3 61 34-99 451-513 (526)
237 PLN02317 arogenate dehydratase 79.4 12 0.00026 37.0 9.0 39 268-306 283-321 (382)
238 cd04890 ACT_AK-like_1 ACT doma 79.4 13 0.00029 25.8 7.1 37 276-316 11-47 (62)
239 cd04937 ACT_AKi-DapG-BS_2 ACT 78.8 20 0.00043 25.3 7.9 28 270-297 3-33 (64)
240 TIGR01327 PGDH D-3-phosphoglyc 78.5 3.7 8.1E-05 42.3 5.5 61 35-100 451-513 (525)
241 PRK10622 pheA bifunctional cho 78.3 18 0.00038 35.9 9.9 50 127-176 296-346 (386)
242 PRK10820 DNA-binding transcrip 78.1 2.1 4.5E-05 44.1 3.5 36 270-305 2-37 (520)
243 PLN02550 threonine dehydratase 78.0 83 0.0018 33.1 15.1 117 35-161 417-542 (591)
244 PTZ00324 glutamate dehydrogena 77.5 14 0.0003 40.9 9.5 67 21-87 215-286 (1002)
245 cd04913 ACT_AKii-LysC-BS-like_ 77.4 15 0.00032 26.1 7.1 27 135-161 9-35 (75)
246 PRK09181 aspartate kinase; Val 76.9 44 0.00096 34.1 12.6 35 267-301 401-437 (475)
247 cd04912 ACT_AKiii-LysC-EC-like 76.9 14 0.00031 27.1 6.9 31 270-300 3-36 (75)
248 cd04919 ACT_AK-Hom3_2 ACT doma 76.7 23 0.0005 24.8 8.8 34 130-163 3-39 (66)
249 cd04921 ACT_AKi-HSDH-ThrA-like 76.3 17 0.00038 26.6 7.3 34 270-303 3-39 (80)
250 cd04891 ACT_AK-LysC-DapG-like_ 76.2 12 0.00026 25.2 6.1 41 42-82 8-49 (61)
251 COG2150 Predicted regulator of 76.1 4.8 0.0001 34.5 4.5 33 130-162 97-129 (167)
252 TIGR01268 Phe4hydrox_tetr phen 76.0 13 0.00028 37.3 8.2 53 268-321 16-69 (436)
253 cd04912 ACT_AKiii-LysC-EC-like 75.3 27 0.0006 25.5 8.1 63 129-198 2-67 (75)
254 cd04924 ACT_AK-Arch_2 ACT doma 74.5 26 0.00056 24.3 8.7 33 130-162 3-38 (66)
255 cd04916 ACT_AKiii-YclM-BS_2 AC 73.7 27 0.00059 24.2 7.9 34 270-303 3-39 (66)
256 COG4492 PheB ACT domain-contai 73.4 13 0.00028 31.0 6.2 56 27-82 64-120 (150)
257 PRK08526 threonine dehydratase 73.4 30 0.00065 34.4 10.2 68 124-198 322-394 (403)
258 cd04868 ACT_AK-like ACT domain 73.1 6.2 0.00014 26.4 3.9 32 271-302 3-37 (60)
259 cd04932 ACT_AKiii-LysC-EC_1 AC 73.1 35 0.00076 25.2 8.6 43 130-176 3-48 (75)
260 cd04891 ACT_AK-LysC-DapG-like_ 73.0 12 0.00027 25.2 5.5 42 135-176 8-50 (61)
261 TIGR01270 Trp_5_monoox tryptop 72.8 14 0.00031 37.2 7.6 54 267-321 30-85 (464)
262 cd04935 ACT_AKiii-DAPDC_1 ACT 70.6 33 0.00072 25.3 7.6 56 135-198 11-67 (75)
263 cd04892 ACT_AK-like_2 ACT doma 69.8 31 0.00068 23.3 7.8 32 270-301 2-36 (65)
264 COG3978 Acetolactate synthase 69.8 18 0.00039 27.3 5.7 46 269-314 4-51 (86)
265 cd04923 ACT_AK-LysC-DapG-like_ 68.7 34 0.00074 23.3 7.6 30 271-300 3-35 (63)
266 PRK11898 prephenate dehydratas 67.6 42 0.00091 31.7 9.3 49 128-176 196-246 (283)
267 TIGR02079 THD1 threonine dehyd 67.2 51 0.0011 32.8 10.3 67 125-198 322-390 (409)
268 cd04868 ACT_AK-like ACT domain 66.9 11 0.00025 25.0 4.1 32 130-161 2-36 (60)
269 cd04916 ACT_AKiii-YclM-BS_2 AC 66.3 41 0.00088 23.3 8.7 33 130-162 3-38 (66)
270 PRK14646 hypothetical protein; 66.0 74 0.0016 27.2 9.7 76 280-356 8-85 (155)
271 cd04936 ACT_AKii-LysC-BS-like_ 65.9 39 0.00085 23.0 7.5 25 276-300 11-35 (63)
272 cd04918 ACT_AK1-AT_2 ACT domai 65.5 27 0.00058 24.8 6.0 44 37-82 3-48 (65)
273 cd04892 ACT_AK-like_2 ACT doma 65.3 39 0.00085 22.8 8.3 32 130-161 2-36 (65)
274 PRK08639 threonine dehydratase 64.7 49 0.0011 33.1 9.7 69 124-198 332-401 (420)
275 PRK14630 hypothetical protein; 63.3 67 0.0014 27.1 8.8 74 280-356 9-82 (143)
276 TIGR01268 Phe4hydrox_tetr phen 63.0 54 0.0012 33.0 9.4 49 128-176 16-65 (436)
277 PRK14645 hypothetical protein; 62.0 1E+02 0.0022 26.4 10.0 75 281-356 11-87 (154)
278 PRK08841 aspartate kinase; Val 61.6 1.7E+02 0.0038 28.9 14.9 112 47-201 266-377 (392)
279 cd04920 ACT_AKiii-DAPDC_2 ACT 60.9 56 0.0012 23.0 7.9 27 130-156 2-31 (63)
280 PRK14637 hypothetical protein; 60.5 1.1E+02 0.0023 26.1 10.0 75 279-356 8-83 (151)
281 PRK08526 threonine dehydratase 60.2 71 0.0015 31.8 9.9 64 267-336 325-393 (403)
282 PRK14634 hypothetical protein; 59.6 1.1E+02 0.0024 26.1 9.7 76 280-356 8-85 (155)
283 cd04933 ACT_AK1-AT_1 ACT domai 59.5 16 0.00036 27.4 4.0 26 275-300 11-36 (78)
284 PRK09084 aspartate kinase III; 59.2 2E+02 0.0044 29.0 18.0 36 125-160 303-341 (448)
285 PRK14636 hypothetical protein; 58.5 1E+02 0.0022 27.0 9.4 77 279-356 5-83 (176)
286 PLN02317 arogenate dehydratase 58.5 71 0.0015 31.6 9.3 49 128-176 283-346 (382)
287 cd04936 ACT_AKii-LysC-BS-like_ 58.4 55 0.0012 22.2 8.1 31 130-160 2-35 (63)
288 COG0527 LysC Aspartokinases [A 56.7 2.3E+02 0.0049 28.7 20.3 32 269-300 384-418 (447)
289 cd04923 ACT_AK-LysC-DapG-like_ 55.8 62 0.0013 21.9 8.1 31 130-160 2-35 (63)
290 cd04934 ACT_AK-Hom3_1 CT domai 55.0 49 0.0011 24.3 5.9 54 276-337 12-65 (73)
291 PF05088 Bac_GDH: Bacterial NA 54.9 1E+02 0.0022 36.1 11.0 92 254-345 473-571 (1528)
292 TIGR02079 THD1 threonine dehyd 52.2 1.1E+02 0.0024 30.4 9.8 65 267-336 324-389 (409)
293 TIGR01270 Trp_5_monoox tryptop 52.1 86 0.0019 31.8 8.7 52 125-176 28-81 (464)
294 PRK09224 threonine dehydratase 51.8 2.9E+02 0.0062 28.4 18.2 130 125-302 325-456 (504)
295 COG3283 TyrR Transcriptional r 51.5 13 0.00027 36.6 2.7 35 271-305 3-37 (511)
296 cd04915 ACT_AK-Ectoine_2 ACT d 51.3 73 0.0016 22.7 6.2 32 36-67 3-36 (66)
297 PF02576 DUF150: Uncharacteris 50.5 1E+02 0.0022 25.7 7.9 68 285-355 2-71 (141)
298 PRK10820 DNA-binding transcrip 49.5 27 0.0006 35.9 5.1 36 130-165 2-37 (520)
299 TIGR01124 ilvA_2Cterm threonin 49.2 1.3E+02 0.0029 30.8 10.0 66 125-198 322-387 (499)
300 PRK08639 threonine dehydratase 49.0 1.3E+02 0.0028 30.1 9.7 65 267-336 335-400 (420)
301 PRK14646 hypothetical protein; 48.4 1.7E+02 0.0038 24.9 9.1 95 47-156 8-103 (155)
302 cd04914 ACT_AKi-DapG-BS_1 ACT 48.0 28 0.00061 25.0 3.6 42 37-82 3-45 (67)
303 PRK14634 hypothetical protein; 47.1 1.8E+02 0.0039 24.9 8.9 96 45-155 6-102 (155)
304 cd04890 ACT_AK-like_1 ACT doma 46.6 33 0.00071 23.8 3.7 37 136-176 11-47 (62)
305 PRK14645 hypothetical protein; 45.6 1.9E+02 0.0041 24.7 8.9 97 43-154 6-103 (154)
306 PRK14647 hypothetical protein; 45.4 1.7E+02 0.0036 25.1 8.6 72 281-355 10-83 (159)
307 PRK00907 hypothetical protein; 45.0 95 0.0021 24.1 6.3 64 35-104 17-84 (92)
308 PRK08961 bifunctional aspartat 44.7 4.7E+02 0.01 28.9 15.4 35 125-159 319-356 (861)
309 PLN02550 threonine dehydratase 44.7 4E+02 0.0087 28.1 16.2 155 126-336 415-571 (591)
310 cd04921 ACT_AKi-HSDH-ThrA-like 44.7 1.2E+02 0.0026 22.0 8.8 33 130-162 3-38 (80)
311 PRK14636 hypothetical protein; 44.6 1.7E+02 0.0036 25.6 8.5 97 44-155 3-100 (176)
312 cd04933 ACT_AK1-AT_1 ACT domai 43.3 24 0.00052 26.5 2.6 25 135-159 11-35 (78)
313 PRK12483 threonine dehydratase 42.2 4.1E+02 0.0089 27.5 18.3 139 125-312 342-483 (521)
314 PF04083 Abhydro_lipase: Parti 41.6 68 0.0015 23.0 4.7 33 53-85 2-34 (63)
315 cd04920 ACT_AKiii-DAPDC_2 ACT 41.6 1.2E+02 0.0026 21.2 8.0 41 270-315 2-46 (63)
316 PRK00092 ribosome maturation p 40.9 2.2E+02 0.0049 24.1 10.3 73 281-356 9-83 (154)
317 PLN02828 formyltetrahydrofolat 40.6 2.9E+02 0.0064 25.9 10.0 100 52-163 1-105 (268)
318 PRK02047 hypothetical protein; 40.5 1.3E+02 0.0029 23.1 6.5 64 35-104 16-83 (91)
319 cd04914 ACT_AKi-DapG-BS_1 ACT 40.3 51 0.0011 23.6 3.9 30 130-159 3-33 (67)
320 TIGR01124 ilvA_2Cterm threonin 40.0 1.7E+02 0.0036 30.1 9.0 63 267-336 324-386 (499)
321 PRK00907 hypothetical protein; 39.1 1.7E+02 0.0038 22.7 6.9 49 128-176 17-69 (92)
322 cd04915 ACT_AK-Ectoine_2 ACT d 37.7 1.5E+02 0.0032 21.0 7.2 33 270-302 4-38 (66)
323 cd07247 SgaA_N_like N-terminal 37.4 1.2E+02 0.0027 23.1 6.2 51 33-89 60-110 (114)
324 PRK09466 metL bifunctional asp 37.0 6E+02 0.013 27.9 18.3 35 126-160 315-352 (810)
325 cd04934 ACT_AK-Hom3_1 CT domai 36.9 1.7E+02 0.0036 21.4 7.1 54 136-198 12-65 (73)
326 COG2902 NAD-specific glutamate 36.6 69 0.0015 36.8 5.8 46 21-66 72-119 (1592)
327 cd04918 ACT_AK1-AT_2 ACT domai 35.9 1.5E+02 0.0033 20.7 8.5 33 130-162 3-37 (65)
328 COG3603 Uncharacterized conser 34.3 74 0.0016 26.0 4.2 34 267-300 62-98 (128)
329 cd07247 SgaA_N_like N-terminal 34.1 1.4E+02 0.0031 22.7 6.0 50 267-322 61-110 (114)
330 PRK14631 hypothetical protein; 33.6 3.3E+02 0.0071 23.8 9.8 75 281-356 10-102 (174)
331 cd04917 ACT_AKiii-LysC-EC_2 AC 33.1 1.7E+02 0.0036 20.3 8.1 26 130-155 3-31 (64)
332 PRK14639 hypothetical protein; 33.1 2.9E+02 0.0063 23.1 9.5 69 285-356 3-73 (140)
333 cd04917 ACT_AKiii-LysC-EC_2 AC 32.5 1.7E+02 0.0037 20.2 8.3 41 270-315 3-47 (64)
334 PRK05925 aspartate kinase; Pro 31.9 5.5E+02 0.012 25.9 16.7 102 35-158 300-404 (440)
335 PRK14633 hypothetical protein; 29.9 3.4E+02 0.0075 22.9 9.1 71 282-356 7-79 (150)
336 PRK00341 hypothetical protein; 29.7 2.1E+02 0.0045 22.1 6.0 62 36-104 18-83 (91)
337 COG2061 ACT-domain-containing 29.5 63 0.0014 27.7 3.2 32 35-66 5-36 (170)
338 PRK14640 hypothetical protein; 28.6 3.6E+02 0.0079 22.8 10.2 73 281-356 8-82 (152)
339 cd07261 Glo_EDI_BRP_like_11 Th 28.1 1.3E+02 0.0028 23.0 4.8 52 34-89 59-110 (114)
340 PRK14632 hypothetical protein; 27.9 3.5E+02 0.0076 23.5 7.8 69 283-355 12-82 (172)
341 PRK14643 hypothetical protein; 27.4 4E+02 0.0088 23.0 9.6 74 281-356 11-89 (164)
342 PRK14638 hypothetical protein; 27.0 3.9E+02 0.0084 22.6 9.7 73 282-356 11-85 (150)
343 COG2061 ACT-domain-containing 26.8 82 0.0018 27.0 3.5 34 127-160 4-37 (170)
344 cd07253 Glo_EDI_BRP_like_2 Thi 25.8 1.8E+02 0.0039 22.2 5.3 51 270-323 70-121 (125)
345 PF01709 Transcrip_reg: Transc 24.2 2.3E+02 0.005 26.0 6.3 112 24-162 80-196 (234)
346 PRK14641 hypothetical protein; 23.7 4.9E+02 0.011 22.7 8.8 64 290-356 20-89 (173)
347 PF04083 Abhydro_lipase: Parti 23.3 2.3E+02 0.0051 20.2 4.9 32 146-177 2-33 (63)
348 PRK14638 hypothetical protein; 21.8 5E+02 0.011 22.0 8.8 92 47-154 9-101 (150)
349 PRK08841 aspartate kinase; Val 21.5 1.2E+02 0.0027 30.0 4.3 62 33-103 316-377 (392)
350 cd08355 Glo_EDI_BRP_like_14 Th 21.5 3.3E+02 0.007 21.0 6.1 51 33-89 67-117 (122)
351 cd08359 Glo_EDI_BRP_like_22 Th 20.8 2.7E+02 0.0059 21.2 5.5 49 35-89 67-115 (119)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.98 E-value=3e-31 Score=282.53 Aligned_cols=197 Identities=20% Similarity=0.281 Sum_probs=166.7
Q ss_pred CCCCCCCCCChH----HHHHHhhc-CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCE
Q 018281 1 MANAYWPYFDPE----YESLSLRI-NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGW 74 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~-~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~ 74 (358)
|+++||.+++|+ |++++... ..|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+
T Consensus 638 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~ 717 (854)
T PRK01759 638 CPEDYFLRNTPKQIAWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY 717 (854)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE
Confidence 689999999999 88888665 56888999999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC----CCcc---------cCCceeeeecCCCCeEEEEEEeCCcccH
Q 018281 75 FMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT----AGAK---------TWPSKQVGVHSVGDHTAIELIGRDRPGL 141 (358)
Q Consensus 75 ~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~----~~~r---------~~~~~~v~~~~~~~~t~v~V~~~DrpGL 141 (358)
++|+|+|++++|.++. +..+++|++.|...+... ..++ .++++.++++.+..+|+|+|.++|||||
T Consensus 718 alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL 796 (854)
T PRK01759 718 VLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL 796 (854)
T ss_pred EEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence 9999999999999875 445555555544333221 1011 1223345557888999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 142 L~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
||+|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.|+.++++ +.|+++|.++|
T Consensus 797 L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 797 LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence 99999999999999999999999999999999999 68999976655 88999998776
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.98 E-value=4.5e-31 Score=281.13 Aligned_cols=185 Identities=16% Similarity=0.245 Sum_probs=161.3
Q ss_pred eeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 120 VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 120 v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
++++.+.++++|+|+++||||||++|+++|+.+|+||.+|+|.| .+|++.|+|+|++ .+|.++ +++++++|++.|.+
T Consensus 669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~-~~~~~~~l~~~L~~ 746 (854)
T PRK01759 669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLL-EFDRRRQLEQALTK 746 (854)
T ss_pred EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCC-CHHHHHHHHHHHHH
Confidence 44577789999999999999999999999999999999999998 8999999999999 588888 46788999999999
Q ss_pred HHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCc
Q 018281 199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR 278 (358)
Q Consensus 199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Dr 278 (358)
+|.+... . .... ++.+ + ..++.++|+|.|+|+.+..+|+|+|.|+||
T Consensus 747 aL~~~~~----~--~~~~--------~~~~------~-------------~~~~~~~~~V~~dn~~s~~~T~iev~a~Dr 793 (854)
T PRK01759 747 ALNTNKL----K--KLNL--------EENH------K-------------LQHFHVKTEVRFLNEEKQEQTEMELFALDR 793 (854)
T ss_pred HHcCCCC----c--chhc--------cccc------c-------------ccCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence 9987543 0 1100 0100 0 016788999999999999999999999999
Q ss_pred chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
|||||+|+++|.++|++|++|||+|.|++|+|+|||++.+|.|+.++ ++++|+++|.++|+
T Consensus 794 pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~-~~~~l~~~L~~~l~ 854 (854)
T PRK01759 794 AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEE-ERKALKSRLLSNLS 854 (854)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChH-HHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999975 44999999998874
No 3
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.98 E-value=9.9e-31 Score=279.41 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=163.0
Q ss_pred eeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 120 VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 120 v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
+++..+.++++|+|+++||||||++|+++|+.+|+||.+|+|+| .+|++.|+|+|++ .+|.++ +++++++|++.|.+
T Consensus 693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~-~~~~~~~I~~~L~~ 770 (884)
T PRK05007 693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPL-SQDRHQVIRKALEQ 770 (884)
T ss_pred EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCC-CHHHHHHHHHHHHH
Confidence 44567779999999999999999999999999999999999998 6679999999999 688888 46788999999999
Q ss_pred HHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCc
Q 018281 199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR 278 (358)
Q Consensus 199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Dr 278 (358)
+|.+... . .. . .++.. +. ..++.++++|.|+|+.+..+|+|+|.|.||
T Consensus 771 aL~~~~~----~--~~-~-------~~~~~------~~------------~~~~~~~~~V~~d~~~s~~~TvlEV~a~DR 818 (884)
T PRK05007 771 ALTQSSP----Q--PP-K-------PRRLP------AK------------LRHFNVPTEVSFLPTHTDRRSYMELIALDQ 818 (884)
T ss_pred HHcCCCC----C--cc-c-------ccccc------cc------------cCCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence 9977543 0 11 1 11110 10 016788999999999999999999999999
Q ss_pred chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR 341 (358)
Q Consensus 279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~ 341 (358)
|||||+|+++|.++|++|++|+|+|.|++|+|+|||++.+|.|+. ++.++.|+++|.++|+.
T Consensus 819 pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 819 PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 67899999999999976
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=8.6e-31 Score=279.88 Aligned_cols=199 Identities=20% Similarity=0.275 Sum_probs=167.8
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCC
Q 018281 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~--~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g 73 (358)
|+++||.+++|+ |++++.+. .+|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|
T Consensus 661 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg 740 (884)
T PRK05007 661 CRADYFLRHTPNQLAWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG 740 (884)
T ss_pred CChHHhcCCCHHHHHHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC
Confidence 689999999999 99999876 57899999999999999999999999999999999999999999999998 678
Q ss_pred EEEEEEEEEeCCCCCCCChhHHHHHHH----HHCCCCCCCC-Ccc---------cCCceeeeecCCCCeEEEEEEeCCcc
Q 018281 74 WFMDVFHVIDQQGKKITDGKTIDYIEK----ALGPKGHITA-GAK---------TWPSKQVGVHSVGDHTAIELIGRDRP 139 (358)
Q Consensus 74 ~~~d~f~V~~~~g~~~~~~~~~~~l~~----~L~~~~~~~~-~~r---------~~~~~~v~~~~~~~~t~v~V~~~Drp 139 (358)
+++|+|+|++.+|.++. +..+++|++ +|.+...... .++ .++++.++++.++.+|+|+|.++|||
T Consensus 741 ~alD~F~V~d~~g~~~~-~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRp 819 (884)
T PRK05007 741 MAMDTFIVLEPDGSPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQP 819 (884)
T ss_pred eEEEEEEEECCCCCCCC-HHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence 99999999999998874 344444554 4543321111 111 11223445578889999999999999
Q ss_pred cHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281 140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (358)
Q Consensus 140 GLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~ 202 (358)
||||+|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.++. +++.+.|+++|.++|..
T Consensus 820 GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 6889886 67788999999988854
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=2.1e-30 Score=276.90 Aligned_cols=202 Identities=18% Similarity=0.293 Sum_probs=168.6
Q ss_pred CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCC---CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe
Q 018281 1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSC---PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~---~~p~V~~~~~~~---~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (358)
|+++||.+++++ |++++..+ +.|.|.+.+.+. .+.++|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus 660 ~~~~Y~l~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T 739 (895)
T PRK00275 660 LGDDYFLRHTAGDIAWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT 739 (895)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE
Confidence 689999999999 99999875 467787887775 58999999999999999999999999999999999987
Q ss_pred -eCCEEEEEEEEEeCCCCCCC-ChhHHHHHHHHHCCCCCCC----C--Ccc---------cCCceeeeecCCCCeEEEEE
Q 018281 71 -DGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT----A--GAK---------TWPSKQVGVHSVGDHTAIEL 133 (358)
Q Consensus 71 -~~g~~~d~f~V~~~~g~~~~-~~~~~~~l~~~L~~~~~~~----~--~~r---------~~~~~~v~~~~~~~~t~v~V 133 (358)
.+|+++|+|+|++++|.++. ++..+++|++.|...+..+ . .++ .++.+.+..+.+.++|+|+|
T Consensus 740 t~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V 819 (895)
T PRK00275 740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEI 819 (895)
T ss_pred cCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEE
Confidence 79999999999999999754 3355565655554333211 1 111 11222344577789999999
Q ss_pred EeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCC
Q 018281 134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (358)
Q Consensus 134 ~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~ 203 (358)
+++||||||++|+++|+.+|+||++|+|.|.++++.|+|||++ .+|.++.+++++++|++.|.++|.+.
T Consensus 820 ~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 820 IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999 68999888788999999999999654
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=7e-29 Score=263.78 Aligned_cols=199 Identities=21% Similarity=0.276 Sum_probs=160.9
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCEEEEec-CCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eC
Q 018281 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDN-SSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~--~~p~V~~~~-~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~ 72 (358)
|+++||.+++++ |++++..+ +.|.|.+.. .+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus 649 l~~~Y~~~~~~~~I~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~ 728 (869)
T PRK04374 649 MPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPH 728 (869)
T ss_pred CCchhhcCCCHHHHHHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCC
Confidence 789999999999 99998774 456666544 67779999999999999999999999999999999999998 89
Q ss_pred CEEEEEEEEEeCCCCCCCC-hhHHHHHHHHHCCCCCCCC-Ccc----------cCCceeeeecCCCCeEEEEEEeCCccc
Q 018281 73 GWFMDVFHVIDQQGKKITD-GKTIDYIEKALGPKGHITA-GAK----------TWPSKQVGVHSVGDHTAIELIGRDRPG 140 (358)
Q Consensus 73 g~~~d~f~V~~~~g~~~~~-~~~~~~l~~~L~~~~~~~~-~~r----------~~~~~~v~~~~~~~~t~v~V~~~DrpG 140 (358)
|+++|+|+|++++|..... ....+.|+++|.+...... .++ .++.+.+.++.+.++|+|+|++.||||
T Consensus 729 g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG 808 (869)
T PRK04374 729 DAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG 808 (869)
T ss_pred CEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence 9999999999988864211 1234555556655332111 111 112223444677799999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 141 LL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
||++|+++|+.+|+||++|+|+|.++++.|+|||++ .+|.++.++++ +.|+++|.++|+
T Consensus 809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 58888766555 899999998874
No 7
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=6.4e-29 Score=264.52 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=160.2
Q ss_pred CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eC
Q 018281 1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~---~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~ 72 (358)
|+++||.+++|+ |++++.++ +.|.|.+.+.+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .+
T Consensus 637 ~~~~Yf~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~ 716 (856)
T PRK03059 637 LDVGYFLRHDAADIAWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRH 716 (856)
T ss_pred CChHHhccCCHHHHHHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCC
Confidence 689999999999 99999875 46888898888889999999999999999999999999999999999987 89
Q ss_pred CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC----CC--Cccc---------CCceeeeecCCCCeEEEEEEeCC
Q 018281 73 GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI----TA--GAKT---------WPSKQVGVHSVGDHTAIELIGRD 137 (358)
Q Consensus 73 g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~----~~--~~r~---------~~~~~v~~~~~~~~t~v~V~~~D 137 (358)
|+++|+|+|++++|. ...+..+++|++.|...+.. .. .++. ++...+..+.+.++|+|+|+++|
T Consensus 717 g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~D 795 (856)
T PRK03059 717 GYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSAND 795 (856)
T ss_pred CeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCC
Confidence 999999999998777 34444555555554433322 11 1110 11122334667799999999999
Q ss_pred cccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 138 rpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
|||||++|+++|+.+|+||++|+|+|.++++.|+|+|++ .+..+++++++|++.|.++|+
T Consensus 796 rpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 796 RPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999966 224467888999999988764
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.96 E-value=1.2e-28 Score=263.87 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=166.4
Q ss_pred CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eC
Q 018281 1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~---~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~ 72 (358)
|+++||.+++|+ |++++.++ +.|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .+
T Consensus 627 ~~~~y~~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~ 706 (850)
T TIGR01693 627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKD 706 (850)
T ss_pred CCchhhcCCCHHHHHHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecC
Confidence 689999999999 99999875 46889888877789999999999999999999999999999999999995 89
Q ss_pred CEEEEEEEEEeCCCCCCCChhHHHHHHHH----HCCCCCCCC--Ccc-----------cCCceeeeecCCCCeEEEEEEe
Q 018281 73 GWFMDVFHVIDQQGKKITDGKTIDYIEKA----LGPKGHITA--GAK-----------TWPSKQVGVHSVGDHTAIELIG 135 (358)
Q Consensus 73 g~~~d~f~V~~~~g~~~~~~~~~~~l~~~----L~~~~~~~~--~~r-----------~~~~~~v~~~~~~~~t~v~V~~ 135 (358)
|+++|+|+|++.+|.++.+++.+++|++. |.+....+. ..+ .++++.++++.+..+|+|+|.|
T Consensus 707 g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~ 786 (850)
T TIGR01693 707 GVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRA 786 (850)
T ss_pred CEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEE
Confidence 99999999999999988776555555544 444322111 111 1122334557788999999999
Q ss_pred CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 136 ~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.||||||++|+++|.++|+||.+|+|.|.++++.|+|+|++ ..|.|+.+ ++.+.|+++|.++|
T Consensus 787 ~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 787 LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 68888876 77888999988765
No 9
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.3e-28 Score=262.15 Aligned_cols=202 Identities=23% Similarity=0.333 Sum_probs=170.5
Q ss_pred CCCCCCCCCChH----HHHHHhhc----CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-e
Q 018281 1 MANAYWPYFDPE----YESLSLRI----NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D 71 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~----~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~ 71 (358)
|+++||.+++++ |++++... .++.|.+++.+..+.++|+|+++||||||++||++|+.+||||++|+|+| .
T Consensus 690 ~~~~yf~~~~~~~i~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~ 769 (931)
T PRK05092 690 HYPAYWLAVDLDTQARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT 769 (931)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec
Confidence 689999999999 99999875 33688899888889999999999999999999999999999999999998 7
Q ss_pred CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC----CCC--cc-----------cCCceeeeecCCCCeEEEEEE
Q 018281 72 GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI----TAG--AK-----------TWPSKQVGVHSVGDHTAIELI 134 (358)
Q Consensus 72 ~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~----~~~--~r-----------~~~~~~v~~~~~~~~t~v~V~ 134 (358)
+|+++|+|+|++++|.+..+++.++.|++.|...+.. +.. ++ .++.+.++++.+..+|+|+|.
T Consensus 770 dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~ 849 (931)
T PRK05092 770 DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVN 849 (931)
T ss_pred CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEE
Confidence 9999999999999888766655666666655433321 110 11 012233455777789999999
Q ss_pred eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCC
Q 018281 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (358)
Q Consensus 135 ~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~ 203 (358)
++||||||++|+++|+++|+||.+|+|.|.++++.|+|+|++ .+|.++.++++++.|++.|.++|.+.
T Consensus 850 ~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 850 GRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred ECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999 68999988888899999999999654
No 10
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.96 E-value=3.5e-28 Score=260.27 Aligned_cols=186 Identities=22% Similarity=0.320 Sum_probs=160.6
Q ss_pred ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~-T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.....+.|+|+|+++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|+|++ .+|.++.+++++++|++.|.++|
T Consensus 662 ~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 662 GTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999999999 48999999999999 68888877778999999999999
Q ss_pred cCCCCCcchhhccccccccccchhhh-hhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcc
Q 018281 201 RGCDDEDSEKVARTSFSMGFTHVDRR-LHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRA 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Drp 279 (358)
.+... .+..+.. ++ .. +. ..++.++|+|.|+|+.+.++|+|+|.|.|||
T Consensus 741 ~~~~~------~~~~~~~------~~~~~------~~------------~~~~~~~~~V~~d~~~s~~~t~~~v~~~Drp 790 (850)
T TIGR01693 741 AGLAK------DPDTISA------RRARR------RR------------LQHFAVPPRVTILNTASRKATIMEVRALDRP 790 (850)
T ss_pred cCCCc------ccccccc------ccCCc------cc------------ccCCCCCCeEEEccCCCCCeEEEEEEECCcc
Confidence 87543 1111100 00 10 00 1157889999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
||||+|+++|.++|++|++|+|.|.|+++.|+|||++..|.|+.+ ++++.|+++|.++|
T Consensus 791 Gll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 791 GLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999997 78899999999876
No 11
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1e-27 Score=256.28 Aligned_cols=188 Identities=20% Similarity=0.278 Sum_probs=162.5
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCC-ChHHHHHHHHHHHHHHcCC
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVG-DQTRLSLMEEQLKNILRGC 203 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~-~~~~~~~L~~~L~~~L~~~ 203 (358)
.+.+.|.|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|++ .+|.++. +++++++|++.|.++|.+.
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999999999999987 7899999999999 5888753 4578999999999999876
Q ss_pred CCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHH
Q 018281 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMF 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~ 283 (358)
.. +...+ .+|.. +. ..++.++++|.|+++.+.++|+|+|.|.||||||+
T Consensus 781 ~~------~~~~~-------~~~~~------~~------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa 829 (895)
T PRK00275 781 DD------YPTII-------QRRVP------RQ------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLA 829 (895)
T ss_pred Cc------cchhh-------hhhhh------hh------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHH
Confidence 53 11111 12211 00 01567889999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccCC
Q 018281 284 DIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345 (358)
Q Consensus 284 ~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~~ 345 (358)
+|+.+|..+|++|..|+|.|.|++|.|+|||++.+|.++.+++.+++|+++|.++|....++
T Consensus 830 ~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~ 891 (895)
T PRK00275 830 RIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEK 891 (895)
T ss_pred HHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999998888999999999999766544
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=7.8e-27 Score=248.22 Aligned_cols=181 Identities=20% Similarity=0.230 Sum_probs=155.6
Q ss_pred cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
....+.+.|+|+++|+||||++||++|+.+|+||.+|+|+| .+|.+.|+|+|.+ ..+.+ .++++++++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence 45668999999999999999999999999999999999998 8999999999999 46654 3568889999999998
Q ss_pred CCCCCcchhhccccccccccchhhh-hhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcch
Q 018281 202 GCDDEDSEKVARTSFSMGFTHVDRR-LHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpG 280 (358)
+... +.. + .+| .. +. ..++.++|+|.|+|+.+.++|+|+|.|.||||
T Consensus 761 ~~~~------~~~-~-------~~~~~~------~~------------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG 808 (869)
T PRK04374 761 GDLQ------KVR-P-------ARRAVP------RQ------------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPG 808 (869)
T ss_pred CCCC------ccc-c-------ccccCc------cc------------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence 7543 111 1 011 10 10 12678999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
|||+|+.+|+++|++|++|+|+|.|++|.|+|||++.+|.++.+++ +++|+++|.++|+
T Consensus 809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~-~~~l~~~L~~~l~ 867 (869)
T PRK04374 809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESA-RQALRDALCACLD 867 (869)
T ss_pred HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988754 4999999999885
No 13
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.2e-26 Score=248.11 Aligned_cols=194 Identities=21% Similarity=0.386 Sum_probs=165.3
Q ss_pred eecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (358)
Q Consensus 121 ~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~ 199 (358)
......+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|++ .+|.+..+++++++|++.|.++
T Consensus 725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~ 803 (931)
T PRK05092 725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDA 803 (931)
T ss_pred EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHH
Confidence 3456668999999999999999999999999999999999998 8999999999999 5787776778899999999999
Q ss_pred HcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcc
Q 018281 200 LRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRA 279 (358)
Q Consensus 200 L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Drp 279 (358)
+.+... +...+ .+|... +. . ..++.++|+|.|+|+.+.++|+|+|.+.|||
T Consensus 804 l~~~~~------~~~~~-------~~r~~~-----~~-~----------~~~~~~~~~V~~~~~~s~~~t~i~I~~~Drp 854 (931)
T PRK05092 804 LSGEVR------LPEAL-------AKRTKP-----KK-R----------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRP 854 (931)
T ss_pred HcCCCC------Ccccc-------ccccCc-----cc-c----------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcC
Confidence 976543 12111 111100 00 0 1157888999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccC
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVS 344 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~ 344 (358)
|||++|+++|.++|++|.+|+|.|.|+++.|+|||++.+|.++.+++.+++|+++|.++|.....
T Consensus 855 GLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 919 (931)
T PRK05092 855 GLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEA 919 (931)
T ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999988899999999999965443
No 14
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.9e-27 Score=237.14 Aligned_cols=198 Identities=21% Similarity=0.273 Sum_probs=160.5
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCC
Q 018281 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (358)
Q Consensus 1 ~~~~yf~~~~~~----h~~~~~~~--~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g 73 (358)
+.++||.+++++ |++++.++ ++|.|.++..+..+.++|+||++|+|.||+.+|+.+...|+||++|+|+| .+|
T Consensus 644 ~~~~yflr~~~~~iawH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG 723 (867)
T COG2844 644 CYANYFLRHSARDIAWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG 723 (867)
T ss_pred ccccceeecCHHHHhHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence 467899999999 99999876 77999988888889999999999999999999999999999999999998 899
Q ss_pred EEEEEEEEEeCCCCCCCChhHHHHHHHHH----CCCCCCCCCcc----------cCCceeeeecCCCCeEEEEEEeCCcc
Q 018281 74 WFMDVFHVIDQQGKKITDGKTIDYIEKAL----GPKGHITAGAK----------TWPSKQVGVHSVGDHTAIELIGRDRP 139 (358)
Q Consensus 74 ~~~d~f~V~~~~g~~~~~~~~~~~l~~~L----~~~~~~~~~~r----------~~~~~~v~~~~~~~~t~v~V~~~Drp 139 (358)
+++|+|+|++++|.++.. .+...++..| ...-..+..++ .+|+..+....+...|+++|.+.|||
T Consensus 724 ~alDtfiv~~~~g~~~~~-dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRp 802 (867)
T COG2844 724 YALDTFIVLEPDGFPVEE-DRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRP 802 (867)
T ss_pred ceeeeEEEecCCCCccch-hHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcc
Confidence 999999999999998774 3444444333 32222221111 11222233366668999999999999
Q ss_pred cHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 140 GLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
|||++++++|++++++|++|+|+|.|+++.|+|+|++ ..|.++. ++..+.+.+.|.+++.
T Consensus 803 GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 803 GLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred cHHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 6888884 4555666666665554
No 15
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-26 Score=234.53 Aligned_cols=187 Identities=18% Similarity=0.262 Sum_probs=159.2
Q ss_pred ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.....+.+.|.|+++|+|.||+.+++++...|+||++|+|+| .+|++.|+|+|+++ +|.++. +.+...++..|.+++
T Consensus 678 ~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~~~l 755 (867)
T COG2844 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELIEAL 755 (867)
T ss_pred ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHHHHH
Confidence 355568899999999999999999999999999999999998 89999999999994 888885 677788888888888
Q ss_pred cCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcch
Q 018281 201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpG 280 (358)
.+... .+ .. .+|++ + . ..+|.++|+|.|.|+.+..+|+|||.+.||||
T Consensus 756 ~s~~~------~~-~~-------~~r~~------r---~---------~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpG 803 (867)
T COG2844 756 LSGKA------QP-PR-------RRRIP------R---K---------LRHFPIPPRVTILPTASNDKTVLEVRALDRPG 803 (867)
T ss_pred hcCCC------CC-cc-------ccccC------c---c---------cceeccCCceeeccccCCCceEEEEEeCCccc
Confidence 65433 11 00 01211 0 0 12789999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV 343 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~ 343 (358)
||++|+.+|.+++++|++|+|+|.|++|+|+|||++..|.++. ++.++.+.+.|.+++....
T Consensus 804 LLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~~~~ 865 (867)
T COG2844 804 LLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALLPND 865 (867)
T ss_pred HHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999996 5677888888888887654
No 16
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=8.3e-26 Score=238.72 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=149.7
Q ss_pred ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
... .+.+.|+|+|+||||||++|+++|+.+|+||++|+|+|.+|.+.|+|+|.+ ..|.+. .++++++.|.++|.
T Consensus 594 ~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~ 667 (774)
T PRK03381 594 PAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALD 667 (774)
T ss_pred eCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHc
Confidence 345 789999999999999999999999999999999999999999999999999 467643 25789999999998
Q ss_pred CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchh
Q 018281 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKL 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGL 281 (358)
+... ....+ .+|..... + + . ..++..++.|.++|+.+.++|+|+|.|+|||||
T Consensus 668 ~~~~------~~~~~-------~~~~~~~~-~-~-~-----------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGL 720 (774)
T PRK03381 668 GDLD------VLARL-------AAREAAAA-A-V-P-----------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGL 720 (774)
T ss_pred CCCc------hhhhh-------hccccccc-c-c-c-----------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhH
Confidence 7533 11111 01100000 0 0 0 116788999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 282 L~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
|++|+.+|+++|+||.+|+|.|.|++|.|+|||++.+|.++.++ ++.|+++|+
T Consensus 721 la~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 721 LARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 99999999999999999999999999999999999999999974 788888875
No 17
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=237.47 Aligned_cols=183 Identities=20% Similarity=0.272 Sum_probs=154.1
Q ss_pred ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.....+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|.+ ..|. ..+++++++|++.|.++|
T Consensus 672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHH
Confidence 355668999999999999999999999999999999999987 8999999999999 4565 445678999999999999
Q ss_pred cCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcch
Q 018281 201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpG 280 (358)
.++.. +...+ .+|.. +. ..++..+++|.|+++.+.++|+|+|.|+||||
T Consensus 750 ~~~~~------~~~~~-------~~~~~------~~------------~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG 798 (856)
T PRK03059 750 AEQAP------LPEPS-------KGRLS------RQ------------VKHFPITPRVDLRPDERGQYYILSVSANDRPG 798 (856)
T ss_pred cCCCC------cchhh-------ccccc------cc------------ccCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence 87653 11111 11110 10 11678899999999999999999999999999
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
||++|+.+|+.+|++|..|+|.|.|++|.|+|||. +.++.+++++++|+++|.++|+
T Consensus 799 LLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 799 LLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999994 4446677888999999998875
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=5.8e-25 Score=232.30 Aligned_cols=173 Identities=21% Similarity=0.231 Sum_probs=143.0
Q ss_pred CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHH
Q 018281 21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (358)
Q Consensus 21 ~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~ 100 (358)
..|.|.+++.+ .+.++|+|+|+||||||++||++|+.+||||++|+|+|.+|+++|+|+|.++.|.+...+...+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 56889998888 89999999999999999999999999999999999999999999999999988876544556777888
Q ss_pred HHCCCCCCCC---Ccc-c-------C--Ccee--eeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC
Q 018281 101 ALGPKGHITA---GAK-T-------W--PSKQ--VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (358)
Q Consensus 101 ~L~~~~~~~~---~~r-~-------~--~~~~--v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~ 165 (358)
+|.+.+.... .++ . . .+.. +.++.+.++|+|+|.++||||||++|+++|+.+|+||.+|+|.|.|
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 8876432110 010 0 0 1112 3346667899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 166 RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 166 ~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
+++.|+|||++ .+|.++.++ .+.|+++|.
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 99999999999 689888653 567777653
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.90 E-value=2.6e-23 Score=155.58 Aligned_cols=75 Identities=75% Similarity=1.236 Sum_probs=72.3
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR 342 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~ 342 (358)
||+|+|.|+|||||||+|+++|.++|++|++|+|+|+|++|.|+|||++.+|.|+.+++++++|+++|.++|.++
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998753
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.86 E-value=1.1e-21 Score=145.73 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=66.5
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
+|+|+|.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||++.+|.|+.+++.+++|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999999989999998876
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.3e-20 Score=141.04 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=68.0
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE--ecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS--SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~--T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
|+|+|.|+|||||||+|+++|+++|++|++|+|+ |.|++++|+||| +.+|.|+.++++++.|+++|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 999999999999 8899999999999999999998875
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=1.1e-17 Score=125.16 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=70.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~ 202 (358)
+|+|+|.|+||||||++|+++|.++|++|..|+|.|.|+++.|+|||++ .+|.|+.++++.+.|+++|.+++..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 7999999999999999999988854
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=8.5e-17 Score=119.59 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=64.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
+|+|+|.++||||||++|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.|+.++++.+.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 69999988888888888775
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=5.1e-16 Score=116.28 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=67.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE--ecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~--T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~ 202 (358)
|+++|.++|||||||+|+++|.++|++|..|+|. |.|+++.|+||| + .+|.++.++++.+.|+++|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999 999999999999 6 5788898889999999999988754
No 25
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.64 E-value=4.6e-15 Score=131.26 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=115.3
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCC
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~ 204 (358)
...+++|++.|+||||+++.|+++|+++||||.+.+....+|.+.-++.++.+ +..++.|+..|...- ...
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l~-~~~ 75 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLKG-AEL 75 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhhh-hhc
Confidence 45788999999999999999999999999999999999999999999988662 235677888777532 222
Q ss_pred CCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHH
Q 018281 205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~ 284 (358)
. +...+ +|... .. .. ... ....++|.+.||||++++
T Consensus 76 ~------L~i~v--------~~~~~-----~~-~~-----------------------~~~-~~~~v~v~G~DrPGIV~~ 111 (190)
T PRK11589 76 D------LLIVM--------KRTTA-----RP-RP-----------------------AMP-ATVWVQVEVADSPHLIER 111 (190)
T ss_pred C------eEEEE--------Eeccc-----cc-cc-----------------------cCC-ceEEEEEEECCCCCHHHH
Confidence 2 12211 12100 00 00 010 124699999999999999
Q ss_pred HHHHhhcCCeEEEEEEEEecCC--ceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 285 IVCTLTDMQYVVFHAAISSDGP--HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 285 I~~~l~~~~v~I~~a~i~T~g~--~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
||++|+++|+||...+-.|++. ...+.|.+.-.-.-|-. ...+.|+.+|....+
T Consensus 112 vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 112 FTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALCT 167 (190)
T ss_pred HHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHHH
Confidence 9999999999999999999985 67777777643333321 235667766665444
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=1.8e-15 Score=114.02 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=68.1
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCC-CCcCCCHHHHHHHHHHHHHHHh
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMD-GCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~-g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
|+|+|.++|||||+++|+.+|+++|+||..|+|.|.|+++.|+|||++.+ |.++.++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999988 8888888888999999998875
No 27
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.63 E-value=5.8e-15 Score=130.65 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=110.6
Q ss_pred CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCC---C
Q 018281 32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH---I 108 (358)
Q Consensus 32 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~ 108 (358)
...+++|+++|+|||||.++|+++|+++||||.+.++...+|.+.-++.|. +.+ .....|+..|..... .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence 457899999999999999999999999999999999999999988777773 333 356777877764331 1
Q ss_pred CCC-cccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCC--e----eEEEEEEEeCCCCC
Q 018281 109 TAG-AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--R----IACVLYVNDDTTCR 181 (358)
Q Consensus 109 ~~~-~r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~--~----~~d~F~v~~~~~g~ 181 (358)
... ++..... -......+.++|.+.||||++++++++|+++|+||.+.+..|.+. . +...|.+.-| .+
T Consensus 78 ~i~v~~~~~~~---~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~- 152 (190)
T PRK11589 78 LIVMKRTTARP---RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-AS- 152 (190)
T ss_pred EEEEEeccccc---cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CC-
Confidence 111 1111110 011122589999999999999999999999999999999888653 2 3444444443 22
Q ss_pred CCCChHHHHHHHHHHHHHHc
Q 018281 182 AVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 182 ~~~~~~~~~~L~~~L~~~L~ 201 (358)
.....|+.+|.+.++
T Consensus 153 -----~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 153 -----QDAANIEQAFKALCT 167 (190)
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 225678888887554
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=6.7e-15 Score=110.89 Aligned_cols=72 Identities=57% Similarity=0.927 Sum_probs=66.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCC-CCCCCChHHHHHHHHHHHHHHc
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTT-CRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~-g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
|+|+|+++||||||++|+++|+.+|+||++|+++|.++++.|+|+|++ .+ +.++.++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999 46 7777778889999999998875
No 29
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=5.9e-15 Score=111.76 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=65.0
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe-cCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR 341 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T-~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~ 341 (358)
+++|.|+||||||++|+.+|+++|++|.+|+|.| .|+++.|+|||++.+|. ..+++++++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence 5899999999999999999999999999999996 89999999999998777 55677889999999998864
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=4.4e-15 Score=111.57 Aligned_cols=69 Identities=29% Similarity=0.483 Sum_probs=63.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
++|.|+++||||||+++|++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999985 899999999999988887777788888888764
No 31
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=6.2e-15 Score=110.77 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=65.3
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
+.|+|.++||||||++|+.+|+.+|++|.+|+|.|. ++++.|+|||++.+|.++.+++++++|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999988 58999999999999999887788899999987654
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=7.3e-14 Score=105.75 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=63.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~ 202 (358)
+++|+++||||||++++++|+.+|+||.+|+|+| .+|++.|+|+|++ ..+. ..++++++++++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 9999999999999 4555 44668889999999988854
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=8.3e-14 Score=102.25 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=49.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK 87 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~ 87 (358)
.+|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 58999999999999999999999999999999997 79999999999998876
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.46 E-value=4.2e-13 Score=113.97 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=119.7
Q ss_pred CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCC---C
Q 018281 32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH---I 108 (358)
Q Consensus 32 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~ 108 (358)
..++++|++++.||||+...+|+...++||||+++|+.+.|+.+.-++.+. |.| +...+|+..|...-. .
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDL 74 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCe
Confidence 456799999999999999999999999999999999999999888665553 444 567889998875332 1
Q ss_pred CC-CcccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCC
Q 018281 109 TA-GAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGD 185 (358)
Q Consensus 109 ~~-~~r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~ 185 (358)
.. +.|..+... ..+...+.+.|.+.||||++.++|++|..+|+||.+....| ..+.-...|.+.- .-+-|..
T Consensus 75 ~v~m~rt~~~~~---~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~- 149 (176)
T COG2716 75 LVVMKRTGAHPT---PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN- 149 (176)
T ss_pred EEEEeecCCCcc---CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc-
Confidence 11 123333321 35567789999999999999999999999999999988887 4555666777766 3444542
Q ss_pred hHHHHHHHHHHHHHHc
Q 018281 186 QTRLSLMEEQLKNILR 201 (358)
Q Consensus 186 ~~~~~~L~~~L~~~L~ 201 (358)
-.+..|+++|++.++
T Consensus 150 -~~i~~l~~~f~al~~ 164 (176)
T COG2716 150 -LSISALRDAFEALCD 164 (176)
T ss_pred -CcHHHHHHHHHHHHH
Confidence 456779999887543
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=5e-12 Score=94.66 Aligned_cols=68 Identities=31% Similarity=0.578 Sum_probs=62.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
+.|+|+++|+||+|++|+++|+.+|+||++|.++|.+++++|+|+|+++++.+. +++.+++|++.|..
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999998889999999999988876 55688889988864
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.37 E-value=9.5e-12 Score=129.49 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=115.4
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCCc
Q 018281 129 TAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED 207 (358)
Q Consensus 129 t~v~V~~-~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~~ 207 (358)
..++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.+...|.|.. ..|.+. ++ ..+++.+..++.+..+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~-- 618 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELP-- 618 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCC--
Confidence 5677777 9999999999999999999999999999 888999999999 577765 33 5688888877776554
Q ss_pred chhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHHH
Q 018281 208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC 287 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~~ 287 (358)
. . . .-+|.+.+.+ +++||++.||||+|+.|+.
T Consensus 619 --~--~------------~--------------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~ 650 (693)
T PRK00227 619 --D--P------------A--------------------------PGITATFWHG------NILEVRTEDRRGALGALLG 650 (693)
T ss_pred --c--c------------c--------------------------CCCCceEeeC------cEEEEEeCccccHHHHHHH
Confidence 0 0 0 1124455554 6899999999999999999
Q ss_pred HhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 288 TLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 288 ~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
+|. +|.+|+++|.|..+.|.||+.. .....++.+++..+|.
T Consensus 651 ~l~----~~~~~~~~~~g~~~~~~~~~~~--------~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 651 VLP----DLLWITASTPGATMIVQAALKP--------GFDRATVERDVTRVLA 691 (693)
T ss_pred Hhh----hhhhHhhcCCCcceEEEEEecC--------cccHHHHHHHHHHHHh
Confidence 999 8999999999999999999972 1234566666666653
No 37
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.37 E-value=6e-12 Score=107.00 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=117.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCC
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~ 204 (358)
..++++|++++.||||+...|++...++||||.++++...|+.+..+..|+.+ | +...+|+..|.. +..+.
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-----~---dav~~le~~l~~-l~~~~ 72 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-----W---DAVTLLEATLPL-LGAEL 72 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-----H---HHHHHHHHHhhc-ccccC
Confidence 34678999999999999999999999999999999999999999999999883 3 456778887763 44434
Q ss_pred CCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHH
Q 018281 205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~ 284 (358)
+ +...+ +|. .+ .. . ........++|.+.||||++.+
T Consensus 73 ~------L~v~m--------~rt---------~~--------------~~----~---~a~~~~v~v~v~a~DrpgIv~~ 108 (176)
T COG2716 73 D------LLVVM--------KRT---------GA--------------HP----T---PANPAPVWVYVDANDRPGIVEE 108 (176)
T ss_pred C------eEEEE--------eec---------CC--------------Cc----c---CCCCceEEEEEEecCCccHHHH
Confidence 3 12111 111 00 00 0 0111234689999999999999
Q ss_pred HHHHhhcCCeEEEEEEEEecCCc--eEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 285 IVCTLTDMQYVVFHAAISSDGPH--ASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 285 I~~~l~~~~v~I~~a~i~T~g~~--a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
+|+.|..+|++|++....|+... ....|.+.-.-+-|..- ....|++++.+..
T Consensus 109 ~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al~ 163 (176)
T COG2716 109 FTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEALC 163 (176)
T ss_pred HHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHHH
Confidence 99999999999999999987643 55678887555666553 4567777766544
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.3e-11 Score=92.49 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=60.4
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
|.|.|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.|+|+|.+.+|.++ ++++.++++++|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999889999999999999988 5677777777664
No 39
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.5e-11 Score=90.30 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=56.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
+.|.|+++||||||++++++|+.+|+||.+|+|+| .+|++.|+|+|.+ .+|. .-..|+++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCcc------chHHHHHHHHHhh
Confidence 57899999999999999999999999999999998 8999999999999 4553 2245777777655
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.30 E-value=4.6e-11 Score=124.41 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=117.5
Q ss_pred EEEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 018281 36 TVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (358)
Q Consensus 36 ~~v~v~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~ 114 (358)
..++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+.++....+.++..+.+.+... ..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP---AP 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc---cC
Confidence 4677776 9999999999999999999999999999 88888999999888888777777888888887766532 22
Q ss_pred CCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHH
Q 018281 115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE 194 (358)
Q Consensus 115 ~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~ 194 (358)
.++..+.+. ++++|.+.||||+|+.++++|. +|..|++.|.|..++|.|++... . ....++.
T Consensus 623 ~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---~------~r~~~~~ 684 (693)
T PRK00227 623 GITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---F------DRATVER 684 (693)
T ss_pred CCCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---c------cHHHHHH
Confidence 333333222 7999999999999999999999 89999999999999999999862 1 1245777
Q ss_pred HHHHHHc
Q 018281 195 QLKNILR 201 (358)
Q Consensus 195 ~L~~~L~ 201 (358)
.+..+|.
T Consensus 685 ~~~~~~~ 691 (693)
T PRK00227 685 DVTRVLA 691 (693)
T ss_pred HHHHHHh
Confidence 7766664
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=2.3e-11 Score=90.07 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=63.5
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
|.|.|.++||||+|++|+++|.++|++|.++++.|.++.+.|.|++++.+|.+ .+++..++++++|..+|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 57999999999999999999999999999999999888999999999999999 45578888999887653
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.22 E-value=1.2e-10 Score=86.12 Aligned_cols=69 Identities=35% Similarity=0.555 Sum_probs=62.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~ 199 (358)
|.+.|.++|+||+|++|+++|+.+|++|.++++.+.++.+.++|++++ .++.+. +.+++++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999998789999999999 577774 567888899988764
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.00 E-value=4.1e-09 Score=77.56 Aligned_cols=69 Identities=32% Similarity=0.421 Sum_probs=60.8
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA 338 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~ 338 (358)
+.|.|.++|+||+|++|+++|+++|++|.++.+.+.++...+.|++...+|.+ .++++.++++++|...
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence 36889999999999999999999999999999999878999999999888777 4456788888888754
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.90 E-value=1.8e-08 Score=74.05 Aligned_cols=69 Identities=39% Similarity=0.645 Sum_probs=59.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~ 199 (358)
+.+.|.++|+||+|++|+++|+++|++|.++.+.+.+++..+.|++.. .++.+. +.+++++|++.|...
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999997669999999998 465553 457888888888654
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.77 E-value=7.4e-08 Score=72.77 Aligned_cols=65 Identities=23% Similarity=0.434 Sum_probs=55.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
+.+|++.|+||||+++.++++|+++|+||.+.+..+.++++...+.+..+ +...++|+++|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999883 346688888888644
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.73 E-value=1.3e-07 Score=71.47 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=50.3
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~ 103 (358)
+.+|+++|+||||+++.++++|+++||||.+.++.+.+|.+.-.+.|.-+ +...++|++.|.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~ 63 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALE 63 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHH
Confidence 57899999999999999999999999999999999999999888888644 235566776665
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=3.1e-07 Score=69.06 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=53.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
+++|.|+||||++++++++|+++|+||.+.+..+.++++...|.+..| .+ ...+.|++.|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHHH
Confidence 378999999999999999999999999999988888888888888774 22 12467888887654
No 48
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.53 E-value=5.1e-07 Score=68.33 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=42.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~ 82 (358)
++|++.|+||||+.++|++.|+++||||.+.+.++.+|++.-.+.+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~ 48 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence 68999999999999999999999999999999999888886555554
No 49
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.51 E-value=3.9e-06 Score=67.16 Aligned_cols=113 Identities=23% Similarity=0.278 Sum_probs=84.1
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCC
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWP 116 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~ 116 (358)
+|.|+..|+||-|..++.+|...|+||..-.|.-.+..-+-.++|..+ +.-.++|.+.-.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~gF--------- 64 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAGF--------- 64 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCCc---------
Confidence 689999999999999999999999999988886555544545555322 122445554321
Q ss_pred ceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 117 SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 117 ~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
.+ ...-++-|..+|+||-|++|+.+|.++++|+..+..++ ....+.-+|.+.+
T Consensus 65 ~V-------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 65 TV-------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred EE-------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 11 12237888999999999999999999999999999987 5566666665544
No 50
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.51 E-value=8e-07 Score=67.26 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=51.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
+++++.|+||||++++|+++|+++|+||.+.+.++.++++.-.+.+..+ . ...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-----~---~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-----W---DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-----c---ccHHHHHHHHHH
Confidence 6899999999999999999999999999999999988888666666652 1 124678877776
No 51
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.50 E-value=1.5e-06 Score=62.90 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=46.9
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~ 337 (358)
|.|.|.++||||+|++|+++|+++|+||.++...+.++.....|.+... +....+++.++|.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV------DEEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE------EGHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC------CCCCHHHHHHHHHc
Confidence 4689999999999999999999999999999999888753333333321 12445566666554
No 52
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=6.3e-07 Score=63.36 Aligned_cols=66 Identities=23% Similarity=0.411 Sum_probs=54.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
++|+|.|||+.||-.++|+++.+.|++|..+++.|+|.+++-+|+|....... .-.+..|+..|.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~---~~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI---KVRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC---cccHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999998653221 1245666666653
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.41 E-value=2.8e-06 Score=61.43 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=46.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCC--eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~--~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
|.|.|.++||||+|++++++|+++|+||..+.+.+.++ ....++...+ ....+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999999555 3333333333 2344566666665
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.38 E-value=1.4e-06 Score=65.46 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=44.1
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCC
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQG 86 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g 86 (358)
+|+|.|+||||+.++++++|+.+||||.+.+..+.++.+.-.|.+.-+.+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 37899999999999999999999999999998888888887788865543
No 55
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=3.1e-06 Score=65.63 Aligned_cols=66 Identities=20% Similarity=0.363 Sum_probs=53.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.++++.|+|+||++++|+++|+++|+||.+.+..+.++.+.-.+.+..| . .. ...+.|++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-~~----~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-SN----LDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-CC----CCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999988887777777763 1 01 12467888888644
No 56
>PRK00194 hypothetical protein; Validated
Probab=98.14 E-value=8.8e-06 Score=63.28 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=52.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~ 199 (358)
.+++++.|+||||++++++++|+++|+||.+....+.++.+.-.+.+..+ +.+. ..+.|++.|.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~l 68 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEEL 68 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHHH
Confidence 67999999999999999999999999999999998887776666666552 1122 236677777763
No 57
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=7.5e-06 Score=63.46 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ 84 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~ 84 (358)
..|++.|+|+||++++|+++|+.+||||.+.+..+.++.+.-.+.+.-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 5789999999999999999999999999999999988877766666544
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=1.6e-05 Score=59.48 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=45.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
+|++.|+||||++++|+++|+++|+||.+.+..+. ++.+.-.+.+..| .+ + ...+.|++.|....
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~-~----~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GF-D----LSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CC-C----CCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999973 2332222233221 00 0 12567888877643
No 59
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.11 E-value=1.5e-05 Score=60.39 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=48.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC------CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN------RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~------~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
+|++.|+|+||++++|+++|+++|+||.+.+..+.+ +.+.-.+.+..| .+ .....|++.|....
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHHHH
Confidence 378999999999999999999999999999999865 444444555442 11 12467888887643
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.10 E-value=2.1e-05 Score=58.84 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=32.5
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t 70 (358)
+|++.|+||||++++|++.|+++||||.+.+.++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4789999999999999999999999999999997
No 61
>PRK00194 hypothetical protein; Validated
Probab=98.08 E-value=1.3e-05 Score=62.37 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=42.6
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~ 82 (358)
.+.|+|.|+|+||+++++++.|+.+|+||.+.+..+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 578999999999999999999999999999999988888777655554
No 62
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.04 E-value=2.8e-05 Score=58.94 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=40.4
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeC------CEEEEEEEEEeC
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG------GWFMDVFHVIDQ 84 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~------g~~~d~f~V~~~ 84 (358)
+|+|.|+|+||++++|++.|+.+|+||.+.+..+.+ +.+.-.+.+.-+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 478999999999999999999999999999999855 555555666544
No 63
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.00 E-value=2e-05 Score=55.85 Aligned_cols=67 Identities=18% Similarity=0.341 Sum_probs=58.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI 199 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~ 199 (358)
++|+|.|+|+.||=.++++++.+.|++|..+.+.|.|....-+|+|.. .. .++ +-+|..|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~~-~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-RP-PSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-CC-CCC--cccHHHHHHHHHhc
Confidence 479999999999999999999999999999999999999999999987 32 223 36789999998764
No 64
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.99 E-value=0.00012 Score=69.28 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=37.2
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE--eeCCEEE
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS--SDGGWFM 76 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~--t~~g~~~ 76 (358)
...+|+|.|+|||||.++|+++|+++|+||.+.+.+ +..+.++
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff 52 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF 52 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE
Confidence 456899999999999999999999999999999998 4444444
No 65
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.97 E-value=0.00023 Score=67.07 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=40.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~ 82 (358)
.|+|.|+|+||+.++|++.|+++|+||.+.+.+. .+|++.-.+.+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~ 49 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ 49 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE
Confidence 5899999999999999999999999999999998 457777555554
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.95 E-value=7.6e-05 Score=56.56 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=47.1
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec--CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~--g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
+.|.|.+.||||+|++|++++.+.|++|..+.+.+. ++.+.-.|.+.- .+.++++.|.+.|+
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHC
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHH
Confidence 469999999999999999999999999999999985 456777777753 33456666665544
No 67
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.93 E-value=0.0012 Score=53.06 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=76.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCCcch
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSE 209 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~~~~ 209 (358)
+|.|...++||=|+..+..|.++|+||.-..|.-.++...-.+.|..| +. -.+.|++ ...
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~---------d~---A~~~Lee----~gF---- 64 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP---------DE---AHSVLEE----AGF---- 64 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh---------HH---HHHHHHH----CCc----
Confidence 688999999999999999999999999977776555433333333331 11 1122221 100
Q ss_pred hhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHHHHh
Q 018281 210 KVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTL 289 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~~~l 289 (358)
.|.+ -.++-|...|+||=|..|+.+|
T Consensus 65 -----------------------------------------------~Vr~-------~dVlaVEmeD~PG~l~~I~~vl 90 (142)
T COG4747 65 -----------------------------------------------TVRE-------TDVLAVEMEDVPGGLSRIAEVL 90 (142)
T ss_pred -----------------------------------------------EEEe-------eeEEEEEecCCCCcHHHHHHHH
Confidence 0111 1268889999999999999999
Q ss_pred hcCCeEEEEEEEEe-cCCceEEEEEE
Q 018281 290 TDMQYVVFHAAISS-DGPHASQEYYI 314 (358)
Q Consensus 290 ~~~~v~I~~a~i~T-~g~~a~d~F~v 314 (358)
.+.++|+.++-..+ ..++|.=.|.+
T Consensus 91 ~d~diNldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 91 GDADINLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred hhcCcCceeeeeeeecCceEEEEEEh
Confidence 99999999998754 44455544443
No 68
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.75 E-value=0.00023 Score=53.93 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=48.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
.+.+.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.+.-. +.++++.+-..|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999983 6777877877762 3455555555544
No 69
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.73 E-value=5.1e-05 Score=58.22 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=53.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
..+|+|.|+||||+.+.++++|+++|+||.+-.-+-..+.+.-.+.+.-+ .. ......++..|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence 56899999999999999999999999999988777788888777777652 11 1234567777766543
No 70
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.73 E-value=0.00016 Score=68.45 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=53.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
...++|+|.|+||||+++.|+++|+++|+||.+.+..+ .++.+...+.+.. +..+ ..++.|++.|.+..
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~l~ 74 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAALA 74 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999 7776555555443 1122 23577888888644
No 71
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00047 Score=51.12 Aligned_cols=60 Identities=7% Similarity=0.164 Sum_probs=46.2
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
|.|.+.||||+|.+|++++++.|++|......+.. ..+.-.|-+.- .+..+++++.++|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev------~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA------PSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc------CCHHHHHHHHHHHh
Confidence 78999999999999999999999999998887653 45555565542 33456677766655
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.62 E-value=0.0017 Score=61.57 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~ 82 (358)
..+.|+|.|+||||+.+.|+++|+.+||||.+.+.++ .+|.+.-.+.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~ 55 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE 55 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence 4678999999999999999999999999999999998 777655545543
No 73
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00022 Score=65.42 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=39.2
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEE
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFM 76 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~ 76 (358)
...++++.|+|+|||.++|++.|..+||||.++..++ .+|+++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF 50 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF 50 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE
Confidence 5679999999999999999999999999999999998 367765
No 74
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.00081 Score=49.83 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=46.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
+.|.+.||||+|++|+.++++.|+||......+ ..+.+...|.+.-. +.++++.+...|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHh
Confidence 678999999999999999999999999888876 35666666766552 3355666666655
No 75
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.56 E-value=0.0024 Score=60.44 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeC
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQ 84 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~ 84 (358)
....|+|.|+||||+.+++|++|+++|+||.+.+.++ .++.+.-.+.+..+
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p 58 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE 58 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence 3578999999999999999999999999999999986 45666545555434
No 76
>PRK07431 aspartate kinase; Provisional
Probab=97.50 E-value=0.11 Score=54.29 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=127.9
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281 33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (358)
Q Consensus 33 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (358)
.+...|.|++. +.||+.+++..+|...|+||.... + .+..+ +|.|...+. ++..+.|++.+.-.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence 36778899874 899999999999999999996544 3 33222 355542211 246677777774332211
Q ss_pred ---CC-cccCCceeeeecCCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC--CeeEEEEEEEeCCCCC
Q 018281 110 ---AG-AKTWPSKQVGVHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HN--RRIACVLYVNDDTTCR 181 (358)
Q Consensus 110 ---~~-~r~~~~~~v~~~~~~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~--~~~~d~F~v~~~~~g~ 181 (358)
+. .+......-......+...|++. .++.+|+++++...|.++|++|..-.... .+ |...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 11 11111111112334455566665 56889999999999999999998664432 22 22233344333
Q ss_pred CCCChHHHHHHHHHHHHHHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEe
Q 018281 182 AVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVE 261 (358)
Q Consensus 182 ~~~~~~~~~~L~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~ 261 (358)
..+......+.+ +..... . ..+.+.
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~-------~------------------------------------------~~i~~~ 516 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP-------G------------------------------------------AEVEDG 516 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC-------C------------------------------------------ceEEEe
Confidence 122222222222 221111 0 112222
Q ss_pred cCCCCceeEEEEEeC---CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEE-EEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281 262 RLEDKGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQE-YYIRHMDGCILDTEGEKERVIKCLEA 337 (358)
Q Consensus 262 n~~~~~~t~l~v~~~---DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~-F~v~~~~g~~l~~~~~~~~l~~~L~~ 337 (358)
+ +.+.|.|.+. .+||++.++.++|.+.|++|.... | ..... |.|. .+..++.-++|..
T Consensus 517 ~----~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV~---------~~~~~~av~~Lh~ 578 (587)
T PRK07431 517 P----AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T---SEIRTSCVVA---------EDDGVKALQAVHQ 578 (587)
T ss_pred C----CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEEe---------HHHHHHHHHHHHH
Confidence 2 4567888874 889999999999999999997666 2 33333 4443 2455666677776
Q ss_pred HH
Q 018281 338 AI 339 (358)
Q Consensus 338 ~l 339 (358)
.+
T Consensus 579 ~f 580 (587)
T PRK07431 579 AF 580 (587)
T ss_pred Hh
Confidence 66
No 77
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.50 E-value=0.0006 Score=64.54 Aligned_cols=68 Identities=10% Similarity=0.163 Sum_probs=51.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
..++|+|.|+||||+++.++++|+++|+||.+....+ .++.+...+.+..| .+ . ....|+++|.+...
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~--~----~~~~L~~~L~~l~~ 75 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG--L----DEDALRAGFAPIAA 75 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC--C----CHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999986 44455555555442 12 1 24678888876443
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.49 E-value=0.00047 Score=65.29 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=49.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE--ecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~--T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
..++|+|.|+||||+++.|+++|+++|+||.+...+ +..+.+..++.+.. .....+ ..+.|++.|.+..
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~l~ 78 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQPVA 78 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHHHH
Confidence 456899999999999999999999999999999997 44454444433443 111122 2456777777643
No 79
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.46 E-value=0.00067 Score=50.62 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=42.1
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
|+|.+.||+|+|++|+.++++.|++|.+..+.+. +. .+++- .+.+.++++.|.++|+
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i----~v~~~~~L~~li~~L~ 59 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNF----PTIEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEe----EecCHHHHHHHHHHHh
Confidence 7899999999999999999999999999999875 22 22221 1223456666665554
No 80
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.41 E-value=0.00011 Score=56.50 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=41.3
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~ 82 (358)
..+|+|.+.||||+.+.++++|+++|.||++-..+--+|++.-.+.|.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 468999999999999999999999999999877777778776555553
No 81
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.35 E-value=0.001 Score=62.74 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=50.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
+|+|.|+||||+++.|+++|+++|+||.+...++. ++++.-.+.+..+ +.++ ..+.|++.|.+++.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~ 69 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALA 69 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999984 4776666666552 2112 24567777776343
No 82
>PRK07431 aspartate kinase; Provisional
Probab=97.30 E-value=0.1 Score=54.48 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=111.8
Q ss_pred ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceee
Q 018281 42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120 (358)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v 120 (358)
..+.+|++++|...|..+|+||.--.... .++..--.|.+...+- +...+.|+ .|...+.. ..
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~-~l~~~~~~---------~~- 341 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAE-AIAPALGG---------AE- 341 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHH-HHHHHcCC---------Cc-
Confidence 47889999999999999999999765543 2333333577743211 11112222 12211111 01
Q ss_pred eecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 121 GVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 121 ~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
.....+...|.+.|. ++||+++++..+|.+.|++|.... + ....-.|.|.. ...++..+.|+
T Consensus 342 -i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh 406 (587)
T PRK07431 342 -VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVC 406 (587)
T ss_pred -EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHH
Confidence 122346678888876 799999999999999999996544 2 22233344433 23445556677
Q ss_pred HHHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEE-eC
Q 018281 198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK-CR 276 (358)
Q Consensus 198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~-~~ 276 (358)
+.+..... ...+. +-+. + .+ -..-+-|..+. +...|++. .+
T Consensus 407 ~~f~~~~~-------~~~~~------~~~~-------~-~~-------------~~~v~gIa~~~----~~~~i~l~~~~ 448 (587)
T PRK07431 407 EAFELEDS-------QIEIN------PTAS-------G-QD-------------EPEVRGVALDR----NQAQLAIRNVP 448 (587)
T ss_pred HHhccCCc-------ccccC------cccc-------C-CC-------------CCcEEEEEccC----CEEEEEECCCC
Confidence 66643322 11110 0010 0 00 01112233222 34455554 57
Q ss_pred CcchhHHHHHHHhhcCCeEEEEEEEE
Q 018281 277 DRAKLMFDIVCTLTDMQYVVFHAAIS 302 (358)
Q Consensus 277 DrpGLL~~I~~~l~~~~v~I~~a~i~ 302 (358)
++||++++|...|.++|++|....-.
T Consensus 449 ~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 449 DRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEec
Confidence 88999999999999999999998653
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0032 Score=45.74 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=42.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-----CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-----~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
+.|.++|+||+|++|+.+|+++|+||.+...... .+...-.|.+... +.++++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998876653 2444444444441 23455566665543
No 84
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0027 Score=46.07 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=29.9
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD 304 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~ 304 (358)
+.|.++|+||+|++|+++|++.|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999998876643
No 85
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.20 E-value=0.0016 Score=50.94 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=53.8
Q ss_pred CCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccC
Q 018281 265 DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVS 344 (358)
Q Consensus 265 ~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~ 344 (358)
...+| |.+...|+||+|.+|+..|+.+|+||.+..+.-.+....-.+.+.-. + +...+++.+.|.+.+
T Consensus 6 ~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~-----~~~i~Qi~kQL~KLi----- 73 (96)
T PRK08178 6 HDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D-----DQRLEQMISQIEKLE----- 73 (96)
T ss_pred CCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C-----chHHHHHHHHHhCCc-----
Confidence 33555 99999999999999999999999999999987555544444444322 1 246677766655332
Q ss_pred CceEEEEEec
Q 018281 345 EVSKFSFYSM 354 (358)
Q Consensus 345 ~~~~~~~~~~ 354 (358)
..+++.-+++
T Consensus 74 dVikV~~l~~ 83 (96)
T PRK08178 74 DVLKVRRNQS 83 (96)
T ss_pred CEEEEEECCC
Confidence 4555555543
No 86
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0024 Score=58.67 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
..+++++.|+|+||+++.|++.|+++|+||.++.-++ ..|++...-.+.. .+.+. ..+.|+..|..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence 5689999999999999999999999999999999997 2455433333333 12322 34567777665
No 87
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.14 E-value=0.0035 Score=54.86 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=48.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
..+.+.+.|+||+|++|+++|+.+|+||.+..+.. ..+...-++.+.. +...++.|+++|.+.++
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence 47899999999999999999999999999999975 4444433333322 12336778888877553
No 88
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.11 E-value=0.0037 Score=47.00 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=44.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
..+.+...|+||+|++|+++|...|+||.+..+.- .. +...-++.+.. ++..++.|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence 47899999999999999999999999999888763 33 33333333332 23455666666554
No 89
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.10 E-value=0.0033 Score=46.80 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~ 164 (358)
.+.|.+.||+|+|++|+.++++.|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999775
No 90
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.09 E-value=0.0038 Score=45.38 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=36.9
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEE
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~ 315 (358)
.+.|..+|+||.|++|+.+|.+.|+||.+..+...++. -.|.+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 47889999999999999999999999999998766553 455554
No 91
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.08 E-value=0.0038 Score=45.54 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=43.3
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~ 337 (358)
.+.+..+|+||.|++|++.|+++|++|.+....... ....-.|.++. +...+++.+.|.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~--------~~~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT--------QEDRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC--------HHHHHHHHHHHHH
Confidence 478899999999999999999999999988766542 23444555542 1345566666553
No 92
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.06 E-value=0.0037 Score=47.72 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=45.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
..+.+...|+||.|++|+++|...|+||.+..+.. ..+...-++.+.. | ++..++.+...|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence 36899999999999999999999999999999875 3333344444431 1 33555666666654
No 93
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0044 Score=45.97 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=43.4
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCcCCCHH-HHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEG-EKERVIKCLE 336 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~l~~~~-~~~~l~~~L~ 336 (358)
.|.|.+.||||+|++|+++|++.|++|......+.. +.+.=.|-+.. .+.. ++++|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v------~~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT------STMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc------CchHHHHHHHHHHHh
Confidence 378999999999999999999999999999875533 34444455532 2222 5566655554
No 94
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.03 E-value=0.0036 Score=47.07 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE-ecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS-SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~-T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
.|.+...|+||+|.+|+..|+.+|+||.+..+. |..+.......+.. .++...++|.+.|.+.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~------~~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV------CTENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE------CCHHHHHHHHHHHhCCc
Confidence 489999999999999999999999999999987 43333333322222 12456677776665433
No 95
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.02 E-value=0.0047 Score=48.36 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T 163 (358)
.....+.+...|+||+|++|++.|+..|+||.+..+.-
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~ 43 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLP 43 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEee
Confidence 45567999999999999999999999999999988764
No 96
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.01 E-value=0.0038 Score=54.59 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=46.6
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
.+.|.+.|+||+|++|+..|+++|+||.+..+..........+-+.-. | ++...++|++.|.+.++
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~----~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G----DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C----CHHHHHHHHHHHHHHhH
Confidence 599999999999999999999999999999996532332224444322 1 12236677777765554
No 97
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.01 E-value=0.0023 Score=44.78 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=38.5
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEe
Q 018281 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVID 83 (358)
Q Consensus 38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~ 83 (358)
|.+..+|+||.+++++.+|.++|+||....+... ++..+-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 4578999999999999999999999999998774 477776676643
No 98
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0066 Score=45.00 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=45.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChH-HHHHHHHHHH
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQT-RLSLMEEQLK 197 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~~~~g~~~~~~~-~~~~L~~~L~ 197 (358)
.+.+.+.|+||++++|+++|+++|+||......+. ++.+.-.|.+... +.+ .++.|-++|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence 57899999999999999999999999999877653 4555566666541 123 5566666555
No 99
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.00 E-value=0.0026 Score=44.50 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=38.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC-CeeEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~-~~~~d~F~v~~ 176 (358)
+.+..+|+||.|++++.+|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35788999999999999999999999999988754 66666666655
No 100
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.96 E-value=0.0071 Score=43.70 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=42.3
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CC-ceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GP-HASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~-~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
|.+.+.|+||+|.+|+.+|+++|++|.+....+. ++ .+.=.|.+. . .+ .+.+.+.+.|.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~l~~~l~ 63 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE-G-----DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE-C-----CH-HHHHHHHHHHh
Confidence 7889999999999999999999999999998775 33 333333332 1 12 35556655554
No 101
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0018 Score=47.89 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=49.2
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE--ecCCceEEEEEEEe-CCCCcCCCHHHHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS--SDGPHASQEYYIRH-MDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~--T~g~~a~d~F~v~~-~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
.+|+.++-||-.+||+|-||+.+|+.|.+|.|. ..+++...+|-+.- ..++.+..+....++.+.+.+.+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999995 34666666544432 22334554444555555554443
No 102
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0087 Score=43.60 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=32.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~ 164 (358)
+.+.+..+|+||.|+++++.|+++|+||.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 468899999999999999999999999998877664
No 103
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.90 E-value=0.0045 Score=44.96 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=37.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
..+.|..+|+||.|++++.+|.++|+||.+..+...++. .++.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 468889999999999999999999999999988775443 4555543
No 104
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.87 E-value=0.0088 Score=45.19 Aligned_cols=50 Identities=6% Similarity=0.164 Sum_probs=39.6
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCC
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGC 320 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~ 320 (358)
.+.+..+|+||.|++|...|+++|+||.+......+. ...=.|||.. +|.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~ 53 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH 53 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC
Confidence 4777889999999999999999999999998776544 4455777754 344
No 105
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.0083 Score=44.19 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=42.7
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
.|.|.+.|+||+|.+|+++|.++|++|......+.. +.+.=.|.+.. .+..+++++.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHH
Confidence 388999999999999999999999999999876543 33333332221 23455566655554
No 106
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.78 E-value=0.01 Score=51.06 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=47.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.+++|...|+||.|++|+++|+.+|+||.+..+... .+...-++.+.. ++..++.|..+|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence 368899999999999999999999999998887753 344444555533 2355667777776533
No 107
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.75 E-value=0.0075 Score=46.05 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-e-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
.+.++..|+||.|++|++.|+..|+||.+-.+. | ..|..--++.+. .|. +...++|.+.|..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~d----~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQD----DTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CCC----HHHHHHHHHHHhC
Confidence 589999999999999999999999999998886 4 344443333332 122 3566777777754
No 108
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.74 E-value=0.007 Score=43.53 Aligned_cols=44 Identities=7% Similarity=-0.010 Sum_probs=36.8
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEE
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYI 314 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v 314 (358)
+.|.+.|+||+|.+|+++|.++|++|.+..+...+ +.+.-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999987754 445445555
No 109
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.73 E-value=0.013 Score=50.60 Aligned_cols=64 Identities=14% Similarity=0.351 Sum_probs=47.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-c-CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-H-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~-~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
..++|...|+||.|++|+++|+.+|+||.+..+.. . .+...-++.+.. ++..++++..+|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999888765 3 345555555543 2355677777766533
No 110
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.0062 Score=43.53 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=35.1
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEE
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~ 315 (358)
++.|..+||||-|.+++.+|+++|+||.+......+......++++
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ 46 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFR 46 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEE
Confidence 3678899999999999999999999999887654432233344444
No 111
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.014 Score=42.98 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=35.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-C-CeeEEEEEE
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYV 174 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~-~~~~d~F~v 174 (358)
.+.+.+.|+||++++++++|.++|+||......+. + +.+.-.+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 57888999999999999999999999998887653 3 444433433
No 112
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.62 E-value=0.022 Score=40.99 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=36.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEE
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN 175 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~ 175 (358)
.+.+.+.|+||+|++|+.+|.++|++|......+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 46788999999999999999999999999988764 34444444443
No 113
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.62 E-value=0.012 Score=50.70 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=47.3
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
+|.|...|+||.|.+|+..|+++|+||.+..+...++...-.+.++- +| ++...++|.+.|.+.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~----d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG----DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC----CHHHHHHHHHHHhcCc
Confidence 48999999999999999999999999999988755544333343432 22 2356677777766444
No 114
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.57 E-value=0.013 Score=44.13 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=44.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
..+.+...|+||.|++++++|...|+||.+..+.. .++...-++.+.+ . ..++.|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhc
Confidence 57899999999999999999999999999999875 3444444454422 2 334556665554
No 115
>PRK08577 hypothetical protein; Provisional
Probab=96.56 E-value=0.05 Score=45.62 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=35.9
Q ss_pred CCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC
Q 018281 265 DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG 305 (358)
Q Consensus 265 ~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g 305 (358)
....+.|.|.+.|+||+|++|+++|++++++|.+....+..
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 33466799999999999999999999999999999887653
No 116
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.54 E-value=0.016 Score=50.07 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=47.1
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
+|.|...|+||.|.+|+..|+++|+||.+..+....+...-.+.++- +| ++...+++.+.|.+.++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~----~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SG----DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-EC----CHHHHHHHHHHHhcccc
Confidence 58999999999999999999999999999987654433333333331 12 24567778777665443
No 117
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.014 Score=42.07 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T 303 (358)
|.+.+.||||.|.+|++.|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678899999999999999999999999998765
No 118
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.022 Score=41.12 Aligned_cols=47 Identities=19% Similarity=0.431 Sum_probs=36.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEe
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~ 176 (358)
.+.+.++|+||.|++++..|.+++++|.+....+. ++...-.|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 49 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG 49 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence 57889999999999999999999999998887764 344443444433
No 119
>PRK04435 hypothetical protein; Provisional
Probab=96.51 E-value=0.045 Score=46.63 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=55.4
Q ss_pred CCCCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCcCCCH-HHHHHHHHHHHHHHh
Q 018281 263 LEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTE-GEKERVIKCLEAAIR 340 (358)
Q Consensus 263 ~~~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~l~~~-~~~~~l~~~L~~~l~ 340 (358)
........|.+...||||+|++|.++|++.|+||......+. ++.+.=.|-|... +. .++++|.++|.
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs------~~~~~L~~Li~~L~---- 133 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS------SMEGDIDELLEKLR---- 133 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC------ChHHHHHHHHHHHH----
Confidence 344566779999999999999999999999999998876543 3345555555431 11 24555554443
Q ss_pred hccCCceEEEEEecC
Q 018281 341 RRVSEVSKFSFYSMG 355 (358)
Q Consensus 341 ~~~~~~~~~~~~~~~ 355 (358)
. .+...++++.+++
T Consensus 134 ~-i~gV~~V~i~~~~ 147 (147)
T PRK04435 134 N-LDGVEKVELIGME 147 (147)
T ss_pred c-CCCcEEEEEEecC
Confidence 3 2356777777653
No 120
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.02 Score=41.24 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=35.0
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-e-CCEEEEEEEE
Q 018281 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHV 81 (358)
Q Consensus 38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~V 81 (358)
+.+.++|+||.+++++..|+++|+||....... . ++...-.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 577899999999999999999999999888765 2 4554433444
No 121
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.43 E-value=0.012 Score=42.26 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=37.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC--CeeEEEEEE
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYV 174 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~--~~~~d~F~v 174 (358)
+.+.+.|+||++++|+++|.++|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999988743 666666666
No 122
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.38 E-value=0.0036 Score=45.46 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=35.7
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEE
Q 018281 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81 (358)
Q Consensus 38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V 81 (358)
+.+.+.|+||++++++.+|+..|+||......+.+|.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 67789999999999999999999999887655555666655544
No 123
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.35 E-value=0.023 Score=37.85 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.9
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~ 306 (358)
|.+.++|+||++.+|.++|.+++++|..........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~ 36 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD 36 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCC
Confidence 467899999999999999999999999999876543
No 124
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.33 E-value=0.042 Score=42.78 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=49.7
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 340 (358)
..|.|-+..+|+||-|+++-..|+++|||+.+..-.-... .-+=.|||.. +|. .+ ...+++-+.|...|.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi-eg~--~~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL-DKK--SA-PALDPIIKSLRNDIG 83 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE-EcC--CC-HHHHHHHHHHHHHhC
Confidence 4466777889999999999999999999999998875443 4455777854 565 23 344444455554443
No 125
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.27 E-value=0.0037 Score=45.45 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=34.5
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEE
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI 314 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v 314 (358)
+-+.+.||||+|.+|+.+|.+.|++|.+....+.++.+.=.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888766555444444443
No 126
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.022 Score=41.16 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=36.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEE
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHV 81 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V 81 (358)
++.+.++|+||.+++++..|+++|+||.+....+. ++...-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 57889999999999999999999999998887764 4554433444
No 127
>PRK04435 hypothetical protein; Provisional
Probab=96.26 E-value=0.041 Score=46.90 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=55.4
Q ss_pred EEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 018281 24 RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (358)
Q Consensus 24 ~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L 102 (358)
..-+.....+....+.+.+.|+||++++|+.+|+.+|+||....... .+|.+.-.|.+...+. ...++.|...|
T Consensus 58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L 132 (147)
T PRK04435 58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKL 132 (147)
T ss_pred eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHH
Confidence 44555555667789999999999999999999999999999888766 4676665666643211 12456666666
Q ss_pred CC
Q 018281 103 GP 104 (358)
Q Consensus 103 ~~ 104 (358)
..
T Consensus 133 ~~ 134 (147)
T PRK04435 133 RN 134 (147)
T ss_pred Hc
Confidence 53
No 128
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.26 E-value=0.065 Score=40.37 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=39.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEe
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~ 176 (358)
+.+.+..+|+||.|+++...|+++|+||.+...... .+...-.|+|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 356677899999999999999999999998887663 445566788766
No 129
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.26 E-value=0.023 Score=42.72 Aligned_cols=61 Identities=11% Similarity=0.173 Sum_probs=44.4
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe-c-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-D-GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA 338 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T-~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~ 338 (358)
.|.+...++||.|.+|+..|...|.||.+..+.- . ++...=++-+ . + +...++|.+.|.+.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~------~~~i~ql~kQL~KL 67 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S------ERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C------CchHHHHHHHHhcC
Confidence 5999999999999999999999999999999874 3 3333334433 2 1 23566777666543
No 130
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.25 E-value=0.037 Score=38.77 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.8
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG 305 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g 305 (358)
|.|.+.|+||++.+|++.|.+++++|....+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46789999999999999999999999999987765
No 131
>PRK08577 hypothetical protein; Provisional
Probab=96.24 E-value=0.055 Score=45.35 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=42.5
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEe
Q 018281 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (358)
Q Consensus 124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~ 176 (358)
.....+.+.|.+.|+||+|++|+++|+++|+||.+....+. ++.+.-.|.+.-
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev 106 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL 106 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence 44568899999999999999999999999999999888773 344445555544
No 132
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.20 E-value=0.058 Score=37.76 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=36.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC-CeeEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~-~~~~d~F~v~~ 176 (358)
+.+.+.|+||.+..++..|.+++++|....+...+ +...-.|.+..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 45779999999999999999999999999887754 44444455544
No 133
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.16 E-value=0.022 Score=41.67 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=36.7
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (358)
Q Consensus 38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~ 82 (358)
+.+..+|+||.++++++.|+++|+||.+..... .++...-.|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 467899999999999999999999999887754 456666556553
No 134
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.047 Score=40.20 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=29.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T 163 (358)
+.+..+|+||-|++++..|+++|+||.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 577899999999999999999999999886554
No 135
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.01 E-value=0.033 Score=40.69 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=36.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND 176 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~ 176 (358)
+.+..+|+||.++++++.|+++|+||.+..... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 456899999999999999999999999887755 3456655565544
No 136
>PRK06635 aspartate kinase; Reviewed
Probab=95.98 E-value=0.19 Score=49.96 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=67.9
Q ss_pred EEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 018281 36 TVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (358)
Q Consensus 36 ~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r 113 (358)
..|+|. ..++||.++++..+|.+.|+||....... .+|..--.|.|...+. +...+.|++ +...+...
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~~---- 332 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGAE---- 332 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCcc----
Confidence 344444 47899999999999999999999654443 3334444566642111 122333333 11111110
Q ss_pred cCCceeeeecCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCCcEEEE
Q 018281 114 TWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA 159 (358)
Q Consensus 114 ~~~~~~v~~~~~~~~t~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A 159 (358)
. .....+...+.|.+ +++||.++++.++|++.|+||...
T Consensus 333 -----~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 333 -----S--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred -----e--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 0 12334667788876 689999999999999999999864
No 137
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.04 Score=40.55 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=30.1
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD 304 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~ 304 (358)
+.+..+|+||-|.++++.|+++|+||.+....-.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6778899999999999999999999998876543
No 138
>PRK07334 threonine dehydratase; Provisional
Probab=95.94 E-value=0.04 Score=54.79 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=47.5
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-----CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-----GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-----g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~ 337 (358)
+.|+|.+.||||+|.+|+++|++.++||.+....+. +..+.=.|.|. +.+.+++++|.+.|+.
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 569999999999999999999999999999998764 33444444443 2334677777777663
No 139
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.91 E-value=0.02 Score=40.86 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=30.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~ 164 (358)
++.+..+|+||-|++++++|.++|+||.+......
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE 35 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence 36788999999999999999999999988876553
No 140
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.80 E-value=0.085 Score=38.46 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=36.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEE
Q 018281 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN 175 (358)
Q Consensus 129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~ 175 (358)
+.+.+..+|+||.|.+++.+|.++|+||.+....-. ++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 478899999999999999999999999998765432 34444445543
No 141
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.80 E-value=0.31 Score=48.31 Aligned_cols=106 Identities=17% Similarity=0.278 Sum_probs=68.0
Q ss_pred CeEEEEEE---ecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281 34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (358)
Q Consensus 34 ~~~~v~v~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (358)
+...|+|. ..++||.++++..+|.+.|+||..-.....+. --.|.|...+ .+...+.|++.+... ..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~--~Is~~V~~~d-----~~~a~~~L~~~~~~~-~~-- 328 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSET--SISLTVDETD-----ADEAVRALKDQSGAA-GL-- 328 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCc--eEEEEEeHHH-----HHHHHHHHHHHHHhc-CC--
Confidence 44567777 57889999999999999999997443321221 1235563211 012334444433211 10
Q ss_pred CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (358)
Q Consensus 111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~ 158 (358)
.. .....+...|.|.+. ++||+++++..+|.+.|+||..
T Consensus 329 -------~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 329 -------DR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred -------ce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 01 123346778888875 7899999999999999999984
No 142
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.79 E-value=0.033 Score=40.24 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 137 DRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 137 DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
|+||.|.+|+++|...|+||.+..+.. .++...-++.+.. +. ..++.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhc
Confidence 789999999999999999999999987 4455555555544 11 334556665554
No 143
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.60 E-value=0.072 Score=39.67 Aligned_cols=48 Identities=4% Similarity=0.106 Sum_probs=37.9
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCC
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDG 319 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g 319 (358)
|-+..+|+||-|+++-..|+.+|||+.+..-.... ..-+=.|||.. +|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~-~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC-EV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE-Ec
Confidence 55566899999999999999999999998876544 34556777754 45
No 144
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.58 E-value=0.077 Score=56.45 Aligned_cols=73 Identities=25% Similarity=0.147 Sum_probs=52.1
Q ss_pred EEEecCCC-CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHH
Q 018281 258 ITVERLED-KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKC 334 (358)
Q Consensus 258 V~v~n~~~-~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~ 334 (358)
|.|+.... .-.+.|.|.+.||+|||.+|+++|++.++||..+.+.+.. ..+.-.|-|.- .+-.++.+|.+.
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~ 728 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGK 728 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence 55654322 2345789999999999999999999999999999988753 44555555542 334566666665
Q ss_pred HH
Q 018281 335 LE 336 (358)
Q Consensus 335 L~ 336 (358)
|.
T Consensus 729 L~ 730 (743)
T PRK10872 729 LN 730 (743)
T ss_pred Hh
Confidence 54
No 145
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.41 E-value=0.068 Score=35.45 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=31.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~ 165 (358)
|.+.++|+||++++++++|..+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987643
No 146
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.076 Score=38.73 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=37.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI 82 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~ 82 (358)
+.+.+..+|+||.+.+++.+|+++|+||.+....- .++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 47889999999999999999999999999876543 345555445553
No 147
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.27 E-value=0.046 Score=40.53 Aligned_cols=70 Identities=23% Similarity=0.212 Sum_probs=46.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
|+++++-||-.||++|-+|..+|+-|.+|+|.- .+++-..+|.+.-...+..+........+.+.+...|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999965 4455444443332112333433333445555555444
No 148
>PRK07334 threonine dehydratase; Provisional
Probab=95.23 E-value=0.14 Score=51.03 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-----CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-----~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
.-.+.|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.|.- .+.++++.+...|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 344789999999999999999999999999999998764 455555555544 134566667666664
No 149
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.23 E-value=0.17 Score=37.45 Aligned_cols=49 Identities=4% Similarity=0.110 Sum_probs=38.2
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCC
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC 320 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~ 320 (358)
+-+..+|+||-|++|...|+++|+||.+..-.-. +....=.|||.- .|.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~-~~~ 51 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF-EGH 51 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ECC
Confidence 3455689999999999999999999999976543 446777888864 343
No 150
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.22 E-value=0.047 Score=39.47 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=35.9
Q ss_pred CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281 277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (358)
Q Consensus 277 DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~ 337 (358)
|+||.|.+|+..|...|+||.+..+....+...-.+.++- .|. +...+.|.+.|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~~----~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SGD----DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES-----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-eeC----chhHHHHHHHHhc
Confidence 7899999999999999999999999874333333333332 121 1245556655543
No 151
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.21 E-value=0.13 Score=38.47 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=39.2
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCc
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCI 321 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~ 321 (358)
|-+..+|+||-|+++-..|+.+|+|+.+..-.... ...+=.|||.. +|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~-e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC-ECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE-EcCH
Confidence 44556899999999999999999999999887544 44566788864 4554
No 152
>PRK06635 aspartate kinase; Reviewed
Probab=95.08 E-value=1.4 Score=43.72 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=67.2
Q ss_pred eEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCC
Q 018281 128 HTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDD 205 (358)
Q Consensus 128 ~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~ 205 (358)
...|++. ..++||+++++..+|.+.|+||....... .++...-.|.+.. +..+...+.|++ +.....
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~ 330 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG 330 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC
Confidence 3344444 46789999999999999999999643332 2223445555543 122223333333 110000
Q ss_pred CcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe---CCcchhH
Q 018281 206 EDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRAKLM 282 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~---~DrpGLL 282 (358)
. ..|.+.+ +.+.+.|.+ .++||++
T Consensus 331 ---------------------~----------------------------~~i~~~~----~ia~isvvG~~~~~~~g~~ 357 (404)
T PRK06635 331 ---------------------A----------------------------ESVTYDD----DIAKVSVVGVGMRSHPGVA 357 (404)
T ss_pred ---------------------c----------------------------ceEEEcC----CeEEEEEECCCCCCCchHH
Confidence 0 1122221 455677765 6999999
Q ss_pred HHHHHHhhcCCeEEEEEE
Q 018281 283 FDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 283 ~~I~~~l~~~~v~I~~a~ 300 (358)
++|.++|++.|++|....
T Consensus 358 a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 358 AKMFEALAEEGINIQMIS 375 (404)
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 999999999999998863
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.99 E-value=2.5 Score=41.85 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCeEEEEEE---eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281 126 GDHTAIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (358)
Q Consensus 126 ~~~t~v~V~---~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~ 202 (358)
.+...|+|. ..++||+++++..+|.++|++|...... ..+ ..-.|.|.. +..++..+.|++.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~-~~Is~~V~~----------~d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSE-TSISLTVDE----------TDADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCC-ceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence 355577887 5688999999999999999999744322 111 222344432 1223333334432210
Q ss_pred CCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe---CCcc
Q 018281 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRA 279 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~---~Drp 279 (358)
.. . ..|.+++ +.++|.|.+ .++|
T Consensus 326 -~~---------------------~----------------------------~~i~~~~----~~a~IsvVG~~~~~~~ 351 (401)
T TIGR00656 326 -AG---------------------L----------------------------DRVEVEE----GLAKVSIVGAGMVGAP 351 (401)
T ss_pred -cC---------------------C----------------------------ceEEEeC----CeEEEEEECCCcccCc
Confidence 00 0 1122222 456777777 4799
Q ss_pred hhHHHHHHHhhcCCeEEEEE
Q 018281 280 KLMFDIVCTLTDMQYVVFHA 299 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a 299 (358)
|+++++.++|.+.|++|...
T Consensus 352 g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 352 GVASEIFSALEEKNINILMI 371 (401)
T ss_pred cHHHHHHHHHHHCCCcEEEE
Confidence 99999999999999999853
No 154
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.94 E-value=0.024 Score=43.50 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=47.2
Q ss_pred EEEEEeCC-cchhHHHHHHHhhcCCeEEEEEEEEe-----cC----CceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 270 VVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAISS-----DG----PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 270 ~l~v~~~D-rpGLL~~I~~~l~~~~v~I~~a~i~T-----~g----~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
++.|.++| ++|.+++|+++|+++|+||...+=-+ .+ ....-.|.|+ |.+ . ..+.|+.+|...
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~-~---~~~~lr~~L~~l- 72 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQP-A---DLEALRAALLEL- 72 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCC-C---CHHHHHHHHHHH-
Confidence 37889999 99999999999999999997655321 12 2445567675 333 2 245666665522
Q ss_pred hhccCCceEEEEE
Q 018281 340 RRRVSEVSKFSFY 352 (358)
Q Consensus 340 ~~~~~~~~~~~~~ 352 (358)
..+-++.++++
T Consensus 73 --a~elgvDIavQ 83 (84)
T cd04871 73 --ASELNVDIAFQ 83 (84)
T ss_pred --hcccCceEEEe
Confidence 22225666654
No 155
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.82 E-value=0.38 Score=35.53 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=36.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
+.+..+|+||-|+++...|+++|+||..-.... .+....-.|+|.-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 345568999999999999999999999886665 3435566777766
No 156
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.81 E-value=0.17 Score=53.72 Aligned_cols=73 Identities=3% Similarity=0.020 Sum_probs=51.7
Q ss_pred EEEecCCC-CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCCcCCCHHHHHHHHHHH
Q 018281 258 ITVERLED-KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCL 335 (358)
Q Consensus 258 V~v~n~~~-~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~~l~~~~~~~~l~~~L 335 (358)
|.++.... .-.+.|.|.+.||+|+|.+|++++++.++||.++.+.+..+ .+.-.|-|.- .+-.++..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 55654322 23456899999999999999999999999999999887653 4444555542 2345666666555
Q ss_pred H
Q 018281 336 E 336 (358)
Q Consensus 336 ~ 336 (358)
.
T Consensus 689 r 689 (702)
T PRK11092 689 R 689 (702)
T ss_pred h
Confidence 4
No 157
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.78 E-value=0.022 Score=43.65 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=43.7
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCCcEEEEEEEe---------cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 130 AIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWT---------HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 130 ~v~V~~~D-rpGLL~~I~~~L~~~g~nI~~A~i~T---------~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
+|+|.|+| +.|++++++++|+++|+||.+.+-.+ ......-.|.+..+ + ...+.|+..|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~----~~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P----ADLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C----CCHHHHHHHHHH
Confidence 47999999 99999999999999999997654432 11244556777653 1 123568888775
No 158
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.52 E-value=0.23 Score=52.72 Aligned_cols=73 Identities=8% Similarity=0.142 Sum_probs=50.7
Q ss_pred EEEecC-CCCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCcCCCHHHHHHHHHHH
Q 018281 258 ITVERL-EDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCL 335 (358)
Q Consensus 258 V~v~n~-~~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L 335 (358)
|.++.. ...-.+.|.|.+.||+|+|.+|+++++..++||.++.+.+.. +.+.-.|-|. +.+-.++..|...|
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L 672 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI 672 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 456543 223345789999999999999999999999999999998764 3343344443 23345666665555
Q ss_pred H
Q 018281 336 E 336 (358)
Q Consensus 336 ~ 336 (358)
.
T Consensus 673 ~ 673 (683)
T TIGR00691 673 K 673 (683)
T ss_pred h
Confidence 4
No 159
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.49 E-value=0.32 Score=35.37 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=39.7
Q ss_pred EEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 132 ELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 132 ~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
.|.-+|+||-|.+++.++.. |.||...+-...+ +.+.-.+.+.. .+++..+.+.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-------PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 57789999999999999999 9999987655432 22222233332 124566777777664
No 160
>PRK06291 aspartate kinase; Provisional
Probab=94.41 E-value=1.4 Score=44.67 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=69.9
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (358)
Q Consensus 34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (358)
+...|+|.+. +.||+++++..+|..+|+||.-....+.... -+|.|...+ . +...+.|++.+......
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d-~----~~av~~L~~~~~~~~~~-- 390 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEAD-L----EKALKALRREFGEGLVR-- 390 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHH-H----HHHHHHHHHHHHHhcCc--
Confidence 4456777754 7899999999999999999986544433322 235554211 1 12345555555421110
Q ss_pred CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (358)
Q Consensus 111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~ 158 (358)
. .....+...|.|.|. +++|+++++..+|...|+||..
T Consensus 391 --------~--i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~ 431 (465)
T PRK06291 391 --------D--VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKM 431 (465)
T ss_pred --------c--eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEE
Confidence 0 123346677888876 6999999999999999999984
No 161
>PRK08210 aspartate kinase I; Reviewed
Probab=94.26 E-value=1.8 Score=42.94 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=64.9
Q ss_pred CeEEEEEEecCC-cchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 018281 34 ECTVVKVDSVNK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA 112 (358)
Q Consensus 34 ~~~~v~v~~~Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~ 112 (358)
+...|+|.+.+. ||.+++|...|.+.|+||.-...+. . . -+|.+... ..+++.+.|... ...
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~--is~~v~~~---------~~~~a~~~l~~~-~~~--- 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-E--VVFTVSDE---------DSEKAKEILENL-GLK--- 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-e--EEEEEcHH---------HHHHHHHHHHHh-CCc---
Confidence 445666765444 9999999999999999999764432 2 1 23555421 122333333321 110
Q ss_pred ccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281 113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (358)
Q Consensus 113 r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~ 158 (358)
.....+...|.|.+. ++||+++++..+|.+.|+||..
T Consensus 333 ---------v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 ---------PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ---------EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 112345667777775 7999999999999999999974
No 162
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.22 E-value=0.35 Score=35.18 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=41.2
Q ss_pred EEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 272 NVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 272 ~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
.|.-+||||=|..+++++.. |.||....-.-.+.....++..-. +.++++.+++.++|.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie-----~~~~~~~~~i~~~L~ 60 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ-----VPDREDLAELKERLE 60 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE-----eCCHHHHHHHHHHHH
Confidence 56789999999999999999 999988876544433333333322 233567777777765
No 163
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=94.13 E-value=0.21 Score=36.20 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=35.6
Q ss_pred ceeEEEEEeC----CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281 267 GYSVVNVKCR----DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316 (358)
Q Consensus 267 ~~t~l~v~~~----DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~ 316 (358)
++..|.|.++ |.||+++.|..+|++.|++|.... | .-.+.|.|..
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 5678888887 899999999999999999998877 2 2356666653
No 164
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.90 E-value=0.3 Score=39.81 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=40.9
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCC
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGC 320 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~ 320 (358)
.|.|-+..+|+||-|++|-..|+.+|||+.+..-...+.. -.=.|||. .+|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId-ieg~ 93 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR-CEVH 93 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE-EEeC
Confidence 4557777799999999999999999999999998766544 44567775 3454
No 165
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.88 E-value=0.94 Score=35.18 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=40.6
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
..+.+.+..+|+||-|+++...|+.+|+|+....... .+....-.|+|.-
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi 63 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL 63 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4466777779999999999999999999999888776 3444566788876
No 166
>PRK11899 prephenate dehydratase; Provisional
Probab=93.80 E-value=0.28 Score=46.34 Aligned_cols=53 Identities=8% Similarity=0.166 Sum_probs=42.5
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCCc
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCI 321 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~~ 321 (358)
.|.|-+..+|+||.||++-.+|+++|||+.+..-.-.+.+ -+=.||| |..|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCC
Confidence 5667777799999999999999999999999998755544 5557777 456754
No 167
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.80 E-value=0.36 Score=51.52 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=49.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
...|.|.+.||+|||++|+.+++..++||.+..+.+. ++.+...|.|.-. +..++.++-..|+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999874 5666666666551 3355666666655
No 168
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.62 E-value=0.52 Score=50.21 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=52.1
Q ss_pred EEEecCCCC-CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 018281 25 ASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (358)
Q Consensus 25 V~~~~~~~~-~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L 102 (358)
|.|+..... -...|.|.+.||+|+|++|+.+++..++||.+.+..+. ++.+...|.+.- .+-..++.|-..|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 466543222 23488899999999999999999999999999998774 456554555531 2224556666666
Q ss_pred CC
Q 018281 103 GP 104 (358)
Q Consensus 103 ~~ 104 (358)
..
T Consensus 689 r~ 690 (702)
T PRK11092 689 RV 690 (702)
T ss_pred hC
Confidence 54
No 169
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.49 E-value=0.47 Score=50.05 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=41.5
Q ss_pred EEEEecCC-CCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc
Q 018281 257 EITVERLE-DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH 307 (358)
Q Consensus 257 ~V~v~n~~-~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~ 307 (358)
.|+++.+. ..-.+.|.|.+.||+|||.+|+++|+..++||......+.+++
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~ 666 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQ 666 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCc
Confidence 45566553 3455679999999999999999999999999999998876444
No 170
>PRK09034 aspartate kinase; Reviewed
Probab=93.48 E-value=2.5 Score=42.76 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred eEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 018281 35 CTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (358)
Q Consensus 35 ~~~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 111 (358)
.+.|++.+ .++||.++++...|+++|+||.-- +.+. .--.|.|...+-. . ..+..+...|...+...
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~~~---~-a~~~~l~~el~~~~~~~-- 377 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQLT---P-KKEDEILAEIKQELNPD-- 377 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHHhh---H-HHHHHHHHHHHHhhCCc--
Confidence 44556653 678999999999999999999864 2222 2234777532110 0 01123333333222110
Q ss_pred cccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEE
Q 018281 112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 112 ~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i 161 (358)
. .....+...|.+.|. ++||+++++..+|.+.|+||.....
T Consensus 378 -------~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 378 -------E--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred -------e--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 0 123346678888654 7899999999999999999986544
No 171
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.43 Score=44.84 Aligned_cols=54 Identities=6% Similarity=0.128 Sum_probs=44.0
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCCc
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCI 321 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~~ 321 (358)
..|.|-+..+|+||-|+++-..|+.+|||+.+....-.+.. ..=.||| |-.|+.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCc
Confidence 46778888899999999999999999999999998755555 4455666 566766
No 172
>PRK06291 aspartate kinase; Provisional
Probab=93.07 E-value=8.4 Score=39.10 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=69.7
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281 126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (358)
Q Consensus 126 ~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~ 202 (358)
.+...|+|.+. +.||+++++..+|.++|++|......+.. ..-.|.|.. ...++..+.|++.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~----------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE----------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence 35567788764 68999999999999999999865333211 222344433 1222333334443321
Q ss_pred CCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---Ccc
Q 018281 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA 279 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---Drp 279 (358)
... ..|++.+ +..+|.|.+. ++|
T Consensus 387 ~~~--------------------------------------------------~~i~~~~----~~a~IsvvG~gm~~~~ 412 (465)
T PRK06291 387 GLV--------------------------------------------------RDVTFDK----DVCVVAVVGAGMAGTP 412 (465)
T ss_pred hcC--------------------------------------------------cceEEeC----CEEEEEEEcCCccCCc
Confidence 000 0122222 4567888774 799
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEE
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAIS 302 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~ 302 (358)
|++.++..+|.+.|++|....-.
T Consensus 413 gv~~rif~aL~~~~I~v~~isqg 435 (465)
T PRK06291 413 GVAGRIFSALGESGINIKMISQG 435 (465)
T ss_pred ChHHHHHHHHHHCCCCEEEEEec
Confidence 99999999999999999865543
No 173
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.03 E-value=0.51 Score=42.54 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=42.1
Q ss_pred cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEE
Q 018281 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVN 175 (358)
Q Consensus 123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~ 175 (358)
+..+....+.+...|+||.+..++.+|.++|+||...++.. .++.+.-+..+.
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 34445667788889999999999999999999999999987 456655555443
No 174
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.71 E-value=1.1 Score=33.27 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=37.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
+.+..+|+||-|+++...|+.+|+|+..-.... .+....-.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 445558999999999999999999999887776 4444566788876
No 175
>PRK08210 aspartate kinase I; Reviewed
Probab=92.62 E-value=8.6 Score=38.13 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=28.0
Q ss_pred CeEEEEEEeCCc-ccHHHHHHHHHHhCCCcEEEEEE
Q 018281 127 DHTAIELIGRDR-PGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 127 ~~t~v~V~~~Dr-pGLL~~I~~~L~~~g~nI~~A~i 161 (358)
+...|+|.+.+. ||.+++|..+|.++|+||.....
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~ 305 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINI 305 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence 455667766554 99999999999999999987633
No 176
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.48 E-value=0.93 Score=48.25 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=51.6
Q ss_pred EEEecCCC-CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 018281 25 ASVDNSSC-PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (358)
Q Consensus 25 V~~~~~~~-~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L 102 (358)
|.|..... .-.+.|.|.+.||+|+|++|+.+++..++||.+.++.+. ++.+.-.|.|. +.+-..+..|...|
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L 672 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI 672 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 45654322 233588899999999999999999999999999999775 56655445553 12224556666666
Q ss_pred CC
Q 018281 103 GP 104 (358)
Q Consensus 103 ~~ 104 (358)
..
T Consensus 673 ~~ 674 (683)
T TIGR00691 673 KT 674 (683)
T ss_pred hC
Confidence 53
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.34 E-value=0.56 Score=33.91 Aligned_cols=46 Identities=26% Similarity=0.467 Sum_probs=34.9
Q ss_pred CCeEEEEEEeC----CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 126 GDHTAIELIGR----DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 126 ~~~t~v~V~~~----DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
.+...|+|.++ |.||++++++..|++.|++|.... | ...+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 35667888887 799999999999999999998665 2 3345566655
No 178
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.23 E-value=0.47 Score=40.85 Aligned_cols=47 Identities=15% Similarity=0.413 Sum_probs=37.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CC-eeEEEEEEEe
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NR-RIACVLYVND 176 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~-~~~d~F~v~~ 176 (358)
-+.+.+.++||.|.++++.++++|.||..++.+.. +| .+.-.|-+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 46788999999999999999999999999999983 33 3444444443
No 179
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=92.18 E-value=0.15 Score=46.56 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=38.7
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEE--EEEEEe
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMD--VFHVID 83 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d--~f~V~~ 83 (358)
...+|.++..|.||.+++|+|+|+..|.||.+--+.-.....+- +.+++.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G 127 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG 127 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence 44689999999999999999999999999998888653333333 445543
No 180
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.18 E-value=0.42 Score=41.15 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.7
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCC
Q 018281 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (358)
Q Consensus 37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g 73 (358)
-+.+.+.|+||.|.++++.++++|.||.-|+.+. .+|
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g 41 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG 41 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence 4778899999999999999999999999999997 455
No 181
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.07 E-value=1.6 Score=32.52 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=37.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
+.+..+|+||-|+++...|+.+|+|+..-+... .+....-.|+|.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 445568999999999999999999999888776 4455667788876
No 182
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=91.80 E-value=15 Score=40.23 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 125 ~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
..+...|+|.+. .+||+++++..+|.++|++|......+ . ...-.|.|.. +..+.....|++.+.
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-S-e~sIsf~V~~----------~d~~~av~~L~~~f~ 379 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-S-EYSISFCVPQ----------SDAAKAKRALEEEFA 379 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-C-CceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence 456678888765 689999999999999999997554332 1 1223344443 122233333443331
Q ss_pred CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---Cc
Q 018281 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---Dr 278 (358)
.... . .+. ..|++.+ +..+|.|.+. ++
T Consensus 380 ~el~-------~-----------~~~----------------------------~~i~~~~----~valIsvvG~gm~~~ 409 (819)
T PRK09436 380 LELK-------E-----------GLL----------------------------EPLEVEE----NLAIISVVGDGMRTH 409 (819)
T ss_pred HHhc-------c-----------CCc----------------------------ceEEEeC----CEEEEEEEccCcccC
Confidence 1110 0 000 1233332 5667888775 78
Q ss_pred chhHHHHHHHhhcCCeEEEEEE
Q 018281 279 AKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 279 pGLL~~I~~~l~~~~v~I~~a~ 300 (358)
||++.++-++|.+.|++|....
T Consensus 410 ~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 410 PGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred cCHHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999998765
No 183
>PRK06382 threonine dehydratase; Provisional
Probab=91.49 E-value=1.5 Score=43.65 Aligned_cols=68 Identities=28% Similarity=0.243 Sum_probs=49.1
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE----e-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW----T-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~----T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
.....+.+.|.-+|+||-|.+++..|.++|+||.+.... . ..+...-.|.|... +++..+.|.+.|.+
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999877664 2 23455666666551 22444456666654
No 184
>PRK09034 aspartate kinase; Reviewed
Probab=91.38 E-value=14 Score=37.32 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=30.1
Q ss_pred ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281 267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (358)
Q Consensus 267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T 303 (358)
+.+.|.|.+ .++||++.++-.+|.+.|++|....-.+
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 445677754 4799999999999999999999886444
No 185
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.36 E-value=8.5 Score=38.70 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=65.6
Q ss_pred CeEEEEEEec-CC-cchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 018281 34 ECTVVKVDSV-NK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (358)
Q Consensus 34 ~~~~v~v~~~-Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~ 111 (358)
+...|+|.+. .. +|.++++...|..+|+||.-....+... --.|.|...+ . +...+.|..... ....
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~--sIs~~I~~~~-~----~~a~~~L~~~~~-~~~~--- 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSET--SISFTVDKED-A----DQAKTLLKSELN-LSAL--- 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCc--eEEEEEEHHH-H----HHHHHHHHHHHH-hcCc---
Confidence 4455666653 33 7999999999999999998665333221 1235554221 0 112222222111 0000
Q ss_pred cccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281 112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 112 ~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
.. .....+...|++.+. +.||+++++..+|+..|+||....
T Consensus 370 ------~~--I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 ------SS--VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ------ce--EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 01 123446778888654 789999999999999999997654
No 186
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.20 E-value=2.5 Score=32.18 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=39.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
++.|.-+|+||-|++++.+|. +.||....-.. ..+...-.+.+..+ ++ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence 577889999999999999999 66666444332 22444444444441 11 3556667776654
No 187
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.19 E-value=0.83 Score=41.18 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=39.5
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEE
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV 81 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V 81 (358)
....+.+.-.|+||...+|+.+|.++|+||-..++.. .+|.++-++.|
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3445667779999999999999999999999999986 57877755444
No 188
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=91.17 E-value=13 Score=37.55 Aligned_cols=120 Identities=14% Similarity=0.176 Sum_probs=74.6
Q ss_pred CCeEEEEEEe-c--CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281 33 PECTVVKVDS-V--NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (358)
Q Consensus 33 ~~~~~v~v~~-~--DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (358)
.+.+.|+|.+ . ..+|..++|.+.|..+|+||.--........ -.|.+...+. +...+.|++...+... +
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~ 376 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-E 376 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-e
Confidence 4556677774 2 3459999999999999999974433322222 3477743211 1344455554443321 1
Q ss_pred CCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 110 ~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
.....+.-.|.+.+. ..||..+++..+|++.|+||.... .....-.|.|..
T Consensus 377 ------------v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~ 430 (447)
T COG0527 377 ------------VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE 430 (447)
T ss_pred ------------EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence 112235556777754 678999999999999999999766 223344555544
No 189
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=91.05 E-value=4.8 Score=43.85 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281 33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (358)
Q Consensus 33 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~ 109 (358)
.+...|+|.+. .+||+++++...|.++|+||.-....+ +.. --+|.|...+. +...+.|++.+...+...
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~-sIsf~V~~~d~-----~~av~~L~~~f~~el~~~ 385 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEY-SISFCVPQSDA-----AKAKRALEEEFALELKEG 385 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCc-eEEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence 35567888754 689999999999999999997554443 222 22466643211 123444554443222110
Q ss_pred CCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281 110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 110 ~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
... . .....+...|.|.|. ++||+++++..+|.+.|+||....
T Consensus 386 -----~~~-~--i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 386 -----LLE-P--LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred -----Ccc-e--EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 000 1 123346778888876 789999999999999999998543
No 190
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.61 E-value=0.57 Score=46.03 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=39.3
Q ss_pred ceeEEEEEeC-CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeC
Q 018281 267 GYSVVNVKCR-DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHM 317 (358)
Q Consensus 267 ~~t~l~v~~~-DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~ 317 (358)
..+.|.+.-+ |+||-|++|+.+|+++||||.+..+ .....-+-.|||...
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 3456777776 9999999999999999999999999 333333434998754
No 191
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.59 E-value=1.3 Score=46.90 Aligned_cols=64 Identities=27% Similarity=0.354 Sum_probs=46.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR-IACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~-~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~ 197 (358)
-.+.|.|.+.||+|+|++|+.+|+..++||......+.++. +.-.|.+.- .+...+..+-..|.
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~ 690 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK 690 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence 45678999999999999999999999999999998875433 444444444 13345555555554
No 192
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.53 E-value=2.5 Score=32.10 Aligned_cols=60 Identities=10% Similarity=0.034 Sum_probs=36.8
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
++.|.-+||||=|.+++++|... ||....-.-. .+.+.-.+-+...+| ++..+++.+.|.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~a--nI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~ 63 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPR--NITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLK 63 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCC--ceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHH
Confidence 57888999999999999999944 4443333222 233443343432211 456677776665
No 193
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=90.27 E-value=1.3 Score=43.86 Aligned_cols=53 Identities=8% Similarity=0.189 Sum_probs=42.5
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE-ecCCceEEEEEEEeCCCCc
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS-SDGPHASQEYYIRHMDGCI 321 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~-T~g~~a~d~F~v~~~~g~~ 321 (358)
.|.|-+..+|+||.|+++-.+|+.+|||+.+..-. +.+..-+=.|||- ..|..
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid-~eg~~ 350 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLD-VQANL 350 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEE-EeCCC
Confidence 56677778899999999999999999999999987 4445566677774 56644
No 194
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.98 E-value=0.64 Score=46.38 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=43.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEE
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~ 175 (358)
....|.+.-.|+||.++.|+.+|+++|+||...+..+.++.+.-+|-+.
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D 385 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD 385 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence 6678888999999999999999999999999999988887777766553
No 195
>PRK06382 threonine dehydratase; Provisional
Probab=89.89 E-value=1.8 Score=43.04 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=44.9
Q ss_pred CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe----c-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS----D-GPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 266 ~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T----~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
...+.|.|.-+||||-|.+|++.|.++|+||.+..... . -+.+.=+|-|.. .++...++|.+.|.
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet------~~~~~~~~v~~~L~ 397 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV------RGQDHLDRILNALR 397 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe------CCHHHHHHHHHHHH
Confidence 35678999999999999999999999999998876641 1 123333444432 12345556666655
No 196
>PLN02551 aspartokinase
Probab=89.83 E-value=16 Score=37.69 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=77.7
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChh---HHHHHHHHHCCCCC
Q 018281 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGK---TIDYIEKALGPKGH 107 (358)
Q Consensus 34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~---~~~~l~~~L~~~~~ 107 (358)
+.+.|+|.+. +.+|.++++...|..+|+||.-- .+.. .--+|.+...+ .+ ..+. ..+.+...|.. +.
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~-~~-~~~~i~~~l~~l~~el~~-~~ 437 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSK-LW-SRELIQQELDHLVEELEK-IA 437 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhH-hh-hhhhHHHHHHHHHHHhhc-CC
Confidence 4567777654 68999999999999999999855 2322 22346664322 11 0000 11112122221 00
Q ss_pred CCCCcccCCceeeeecCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCC
Q 018281 108 ITAGAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGD 185 (358)
Q Consensus 108 ~~~~~r~~~~~~v~~~~~~~~t~v~V~~~--DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~ 185 (358)
. .....+...|.|.|. .+||+++++..+|...|+||......+ ....-.|.|..
T Consensus 438 -----------~--V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga--SeinIS~vV~~--------- 493 (521)
T PLN02551 438 -----------V--VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA--SKVNISLIVND--------- 493 (521)
T ss_pred -----------e--EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC--CCcEEEEEEeH---------
Confidence 1 123346667777764 689999999999999999997544332 22233354544
Q ss_pred hHHHHHHHHHHHHHH
Q 018281 186 QTRLSLMEEQLKNIL 200 (358)
Q Consensus 186 ~~~~~~L~~~L~~~L 200 (358)
...++.-+.|++.+
T Consensus 494 -~d~~~Av~aLH~~F 507 (521)
T PLN02551 494 -DEAEQCVRALHSAF 507 (521)
T ss_pred -HHHHHHHHHHHHHH
Confidence 23344455566555
No 197
>PRK09181 aspartate kinase; Validated
Probab=89.49 E-value=5.1 Score=40.80 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=66.8
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (358)
Q Consensus 34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (358)
+.+.|+|.+. +.+|+.+++...|.++|+||. .+.+.. .--+|.|... . ...+++.+.|...+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~~~- 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYPNA- 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcCCc-
Confidence 4556666543 689999999999999999998 333322 2234666432 1 12233333443322211
Q ss_pred CcccCCceeeeecCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCCcEEEE
Q 018281 111 GAKTWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAAA 159 (358)
Q Consensus 111 ~~r~~~~~~v~~~~~~~~t~v~V~~~D--rpGLL~~I~~~L~~~g~nI~~A 159 (358)
.+ .. .+...|.+.|.. +||+.+++..+|.+.|+||..-
T Consensus 396 --------~i--~~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i 435 (475)
T PRK09181 396 --------EV--TV-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLAL 435 (475)
T ss_pred --------eE--EE-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEE
Confidence 11 22 567788888765 8999999999999999999743
No 198
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.44 E-value=1.2 Score=38.29 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=45.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
.-++.+.-.|.||.|+++++.|+..|+||.+..+.- .. +...-++.+ . | ++...+++...|....+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~---g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-S---G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-c---C----CcchHHHHHHHHHhhcc
Confidence 346788899999999999999999999999988864 33 322223332 2 1 22445677777776543
No 199
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.67 E-value=1.5 Score=42.86 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=40.1
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~ 316 (358)
.++.|.|.-+||||-|..|+..|...||||.+.+|.-..+...-++.+..
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 56679999999999999999999999999999999644444444444443
No 200
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.59 E-value=1.9 Score=42.14 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=41.9
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
-..++.|.|.-+|+||-+++++..|...|+||.+.+|.-..+...-++.+.-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 3577899999999999999999999999999999999764444444444444
No 201
>PRK08198 threonine dehydratase; Provisional
Probab=88.53 E-value=4.1 Score=40.43 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
......+.|.-+|+||-|+++...+.+.|.||.+....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 44566899999999999999999999999999988765
No 202
>PRK09084 aspartate kinase III; Validated
Probab=88.44 E-value=23 Score=35.76 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=63.2
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (358)
Q Consensus 34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (358)
+...|+|.+. +.+|.++++...|.++|+||.--. +. . .--+|.|...+-.........+++...|.. +.
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~~~~~~~~~~~~~~l~~el~~-~~--- 376 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTTGSTSTGDTLLTQALLTELSQ-LC--- 376 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEechhhhhhhhHHHHHHHHHHHhc-CC---
Confidence 4556777654 689999999999999999998554 22 2 223466653221110001122344444432 10
Q ss_pred CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCC
Q 018281 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRF 154 (358)
Q Consensus 111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~ 154 (358)
. .....+...|.+.|. ++||+++++..+|...++
T Consensus 377 --------~--i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 377 --------R--VEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred --------e--EEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 0 122346778888886 789999999999987543
No 203
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.23 E-value=1.9 Score=43.23 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=37.7
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~ 316 (358)
.|.+...|+||.|.+|+.+|.+++++|.+..-..........+++++
T Consensus 350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 350 YLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred EEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 49999999999999999999999999998865543334455666665
No 204
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.18 E-value=0.78 Score=45.75 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=47.1
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHH
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIE 99 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~ 99 (358)
....|.+.-+|+||.+++|+..|+++|+||...+..+.++.++-+|-+ ++. + +++.++.|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~~-~-~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DAD-Y-AEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CCC-C-cHHHHHHHH
Confidence 556788899999999999999999999999999998888877755433 332 2 234555555
No 205
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=88.09 E-value=1.4 Score=40.52 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=38.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEE--EEEEEe
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC--VLYVND 176 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d--~F~v~~ 176 (358)
...++.+...|.||.+.+|+++|+..|+||.+.-+--....+.. +..++.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G 127 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG 127 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence 44588899999999999999999999999998887653333332 444554
No 206
>PRK11899 prephenate dehydratase; Provisional
Probab=88.01 E-value=4.4 Score=38.24 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=41.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
.|.+.+..+|+||.|+++..+|+.+|+|+..-...- .++...-.|||.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 566777779999999999999999999999888876 4555677888876
No 207
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.83 E-value=2 Score=34.94 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=38.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEe
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~ 176 (358)
.+.+.+..+|+||-|+++...|+.+|+|+........ +....-.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4666666799999999999999999999998877763 344455677765
No 208
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.26 E-value=6.2 Score=27.66 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=27.9
Q ss_pred EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281 270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (358)
Q Consensus 270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T 303 (358)
.|.+.+ .+.||++++|.++|.+.|+++....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455655 5889999999999999999998885543
No 209
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.55 E-value=6.2 Score=38.78 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=46.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-----cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-----~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
......+.|.-+|+||.|++++..+.++|.||.+..-.. ..+.+.-.+.+... +++..+.|.+.|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 345558999999999999999999999999998875441 22444455555441 23455566666654
No 210
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=86.31 E-value=6 Score=29.81 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=51.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L 200 (358)
.+.+.+...++|+.|.++-++....|+.+.....++ .+|.+.-.|.|..+ .++ +.|.+.|++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~------~lL~~QLeKl~ 68 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSV------DLLTSQLEKLY 68 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CCh------HHHHHHHHHHc
Confidence 468899999999999999999999999999988888 36777777777552 333 45777777654
No 211
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=85.86 E-value=6.1 Score=45.67 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCCCCChH----HHHHHhhcC---CCEEEEecCC--CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--
Q 018281 2 ANAYWPYFDPE----YESLSLRIN---PPRASVDNSS--CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-- 70 (358)
Q Consensus 2 ~~~yf~~~~~~----h~~~~~~~~---~p~V~~~~~~--~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-- 70 (358)
+.+|=..|+|+ +..+++++. ...+.+.... .++.+.+.+|.+.+|..|+++.-+|..+|+.|.+.+-+.
T Consensus 447 p~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~ 526 (1528)
T PF05088_consen 447 PASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIR 526 (1528)
T ss_pred CHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceee
Confidence 45677778888 677777663 3455554332 336789999999999999999999999999999998875
Q ss_pred e-C--CEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281 71 D-G--GWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103 (358)
Q Consensus 71 ~-~--g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~ 103 (358)
. + ...+..|.+..+.+.........+.++++|.
T Consensus 527 ~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 527 RADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred cCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 2 2 3467779998777765444455556665554
No 212
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.73 E-value=6.7 Score=29.13 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=24.1
Q ss_pred eCCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 275 CRDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
.+++||++++|-.+|+++|++|....
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 47899999999999999999999984
No 213
>PRK06349 homoserine dehydrogenase; Provisional
Probab=85.56 E-value=4.3 Score=40.68 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=41.2
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
....+.+.+...|+||.|++|+++|.++|+||.+.......+....++.++.
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3456789999999999999999999999999997766544334455666666
No 214
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.73 E-value=9.6 Score=28.26 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=36.2
Q ss_pred eCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCc-CCCHHHHHHHHHHHHH
Q 018281 275 CRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCI-LDTEGEKERVIKCLEA 337 (358)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~-l~~~~~~~~l~~~L~~ 337 (358)
..+.||++++|-++|++.|++|.+..- ++ +.+-++-..... +.+ +..++|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~---~~isftv~~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE---TNVTVSLDPDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---CC---CEEEEEEeCcccccch-HHHHHHHHHHHh
Confidence 368899999999999999999999842 33 334333222221 232 345566666553
No 215
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.43 E-value=2.5 Score=41.54 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.5
Q ss_pred CeEEEEEEeC-CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 127 ~~t~v~V~~~-DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
..+.+.+.-+ |+||.|++++.+|..+|+||.+-++.- .....-.|+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEEEEEEE
Confidence 4667777776 999999999999999999999999832 222222288766
No 216
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=84.39 E-value=3.7 Score=35.40 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=44.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-e-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
-.+.+.-.|.||.++++++.|+..|+||.+-.+. | .++..--++.+. |. +...++|.+.|..
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~k 68 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNK 68 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHh
Confidence 4678889999999999999999999999998885 5 344333333332 11 2355666666653
No 217
>PRK08198 threonine dehydratase; Provisional
Probab=84.07 E-value=6.3 Score=39.08 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~ 69 (358)
....+.|.-+|+||-|++++.+++..|.||.+-...
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 445889999999999999999999999999998875
No 218
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=83.71 E-value=39 Score=37.19 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=63.8
Q ss_pred CeEEEEEE---ecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281 34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (358)
Q Consensus 34 ~~~~v~v~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (358)
+.+.|+|. ..+.+|.+++|...|..+|+||.-- .+. + .--+|.+.+.+. ......++.+...|.. +.
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e-~sis~~i~~~~~--~~~~~~~~~l~~~l~~-~~--- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-E-TNVTVSLDPSEN--LVNTDVLAALSADLSQ-IC--- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-C-CEEEEEEccccc--cchHHHHHHHHHHHhh-cC---
Confidence 45566774 3468999999999999999999643 232 2 222355543221 1011234444445542 11
Q ss_pred CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcE
Q 018281 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNV 156 (358)
Q Consensus 111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI 156 (358)
.+ ....+...|.|+|. .+||+.+++..+|.+.|+++
T Consensus 391 --------~i--~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 --------RV--KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred --------cE--EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 01 12235678888886 78999999999999977655
No 219
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=83.62 E-value=62 Score=35.41 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=65.1
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (358)
Q Consensus 34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~ 110 (358)
+.+.|+|.+. +.||.++++..+|..+|+||.--...+. +. .-.|.+... ..+.+.+.|.... ..
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~~---------~~~~~~~~l~~~~-~~- 382 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTSE---------VADSALKLLDDAA-LP- 382 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeHH---------HHHHHHHHHHhhc-CC-
Confidence 4456677654 7789999999999999999975443322 22 223445311 1123333333211 10
Q ss_pred CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (358)
Q Consensus 111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~ 158 (358)
..+ ....+...|.|.|. .+||+.+++..+|.+.|+++..
T Consensus 383 -------~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 383 -------GEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred -------CcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 111 22346778889885 6899999999999999999853
No 220
>PRK12483 threonine dehydratase; Reviewed
Probab=83.14 E-value=34 Score=35.34 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC-CCCC-
Q 018281 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK-GHIT- 109 (358)
Q Consensus 33 ~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-~~~~- 109 (358)
.....+.|.-+||||-|.+++.+|... ||.+..-.. ..+. ..+++...-.+. ++..+.|.+.|.+. +...
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR----HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence 355678889999999999999999988 888766554 2233 333444332221 12236777777532 2111
Q ss_pred ---C-CcccCCceeeee--cCCCCeEEEEEEeCCcccHHHHHHHHHHh-CCCcEE
Q 018281 110 ---A-GAKTWPSKQVGV--HSVGDHTAIELIGRDRPGLLSEISAVLAN-LRFNVA 157 (358)
Q Consensus 110 ---~-~~r~~~~~~v~~--~~~~~~t~v~V~~~DrpGLL~~I~~~L~~-~g~nI~ 157 (358)
. ..+...+.-|.- .....--.+.|.-|.|||-|.+++.+|.. .+++-.
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF 470 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLF 470 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeee
Confidence 0 000000000100 01123346778889999999999999985 244443
No 221
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=83.13 E-value=8.7 Score=36.19 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
..|.+-+..+|+||.|+++.+.|+.+|+|+......- .++...-.|+|.- .|. ..+ ..++++|.+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~-~~~----~~v~~AL~e 258 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGH-IDD----PLVKEALEE 258 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecC-cCc----HhHHHHHHH
Confidence 4778888888999999999999999999998877775 4555667788866 344 222 345555554
No 222
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=83.09 E-value=2 Score=36.84 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.3
Q ss_pred CeEEEEEE--ecCCcchHHHHHHHHhhCCceEEEEEE
Q 018281 34 ECTVVKVD--SVNKPGILLEVVQVLSDLDLIITKAYI 68 (358)
Q Consensus 34 ~~~~v~v~--~~DrpGLl~~i~~~L~~~glnI~~A~I 68 (358)
++-+|+++ ..+.||+++.+++.++++||+|..+-.
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 44455555 477899999999999999999997654
No 223
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.98 E-value=3.2 Score=42.81 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=40.3
Q ss_pred cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEE
Q 018281 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYV 174 (358)
Q Consensus 123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v 174 (358)
+-.+....+-+...|+||.+..++..|.++++||...++.. .++.+.-++.+
T Consensus 447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 33445566677789999999999999999999999999876 44555555544
No 224
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=82.86 E-value=14 Score=25.85 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=26.4
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCCcEEEEEE
Q 018281 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 130 ~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~i 161 (358)
.|.+.| ++.||+++++.++|.+.|+++.....
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 466666 47899999999999999999976543
No 225
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.86 E-value=12 Score=26.24 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=28.0
Q ss_pred EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281 270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (358)
Q Consensus 270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T 303 (358)
.|.+.+ .++||+++++.++|.+.|+++....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 455655 4789999999999999999998886544
No 226
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=81.91 E-value=10 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.2
Q ss_pred eCCcchhHHHHHHHhhcCCeEEEEEEE
Q 018281 275 CRDRAKLMFDIVCTLTDMQYVVFHAAI 301 (358)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~~v~I~~a~i 301 (358)
.+|+||.+.++.++|.+.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 479999999999999999999996654
No 227
>PRK09224 threonine dehydratase; Reviewed
Probab=81.77 E-value=52 Score=33.79 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=71.5
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC-CCCC---
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK-GHIT--- 109 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-~~~~--- 109 (358)
....+.|.-|||||-|.+++.+|. +.||..-+-.-.+.....+|+...-.+. ++-.+.|.+.|.+. ....
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 456788889999999999999999 6888876554322222334444332221 12256677777532 1110
Q ss_pred -C-CcccCCceeeee--cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 110 -A-GAKTWPSKQVGV--HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 110 -~-~~r~~~~~~v~~--~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
. ..+...+.-|.- .....--.+.|.-|.|||-|-+....|. -+.||..-+=.
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 000000000000 0112334678889999999999999776 77888877764
No 228
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=81.47 E-value=62 Score=32.48 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=28.8
Q ss_pred ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
+.+.+.|.+ .++||++++|.++|++.|++|....
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 456777754 4889999999999999999998876
No 229
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=81.23 E-value=17 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=24.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCcEE
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFNVA 157 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI~ 157 (358)
.|.+.|. +.||+++++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677775 789999999999999999996
No 230
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.17 E-value=3.1 Score=42.94 Aligned_cols=50 Identities=14% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEE
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYV 174 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v 174 (358)
...+..+-+...|+||.+..++..|.++++||...++.. .++.+.-++.+
T Consensus 448 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~ 499 (525)
T TIGR01327 448 EPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL 499 (525)
T ss_pred ecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence 345556667779999999999999999999999988876 45565555544
No 231
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.87 E-value=15 Score=25.50 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=39.1
Q ss_pred EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
.+.+.+ .++||++.++.++|++.|++|......+.+ ..=.|.+.. +..+++.+.|.+.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~---------~~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE---------DDGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH---------HHHHHHHHHHHHHh
Confidence 455555 478999999999999999999888664422 222355543 34455555555544
No 232
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=80.86 E-value=10 Score=37.32 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=41.9
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe--c---CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS--D---GPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T--~---g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
.|.|.-+||||-|.++++.+++.|.||....-.- . -+.+.=.+.|.. .+++..++|.+.|.
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet------~~~~~~~~i~~~L~ 372 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET------RGKEHLDEILKILR 372 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe------CCHHHHHHHHHHHH
Confidence 5899999999999999999999999998875431 1 123333333332 12355666766665
No 233
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=80.75 E-value=11 Score=31.29 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=51.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
..-+.+.+.-.||.|.|+++-.++++.++||...+..- ..|++.-+..+.. . + . +...+.+-+.|+.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~-s-s--m--~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT-S-S--M--EKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc-h-h--h--hhhHHHHHHHHhc
Confidence 35567888999999999999999999999999888776 7888888877765 2 1 1 2344555555553
No 234
>PRK11898 prephenate dehydratase; Provisional
Probab=80.65 E-value=9.2 Score=36.16 Aligned_cols=53 Identities=6% Similarity=0.089 Sum_probs=39.5
Q ss_pred eeEEEEEeCC-cchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCc
Q 018281 268 YSVVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCI 321 (358)
Q Consensus 268 ~t~l~v~~~D-rpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~ 321 (358)
.|-|-+...+ +||-|+++-..|+++|||+.+..-.-.. ..-+=.|||. .+|..
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd-~eg~~ 250 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFID-VEGHI 250 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEE-EEccC
Confidence 4556666654 6999999999999999999999887543 3455677775 45654
No 235
>PLN02551 aspartokinase
Probab=80.03 E-value=78 Score=32.73 Aligned_cols=139 Identities=12% Similarity=0.258 Sum_probs=81.3
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 125 ~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
..+.+.|+|.+. +.+|+++++...|.++|++|.... +. + ..-.|.+.. ..+ ...+.+++.+...+.
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e-~sIs~~v~~----~~~---~~~~~i~~~l~~l~~ 431 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-E-VSISLTLDP----SKL---WSRELIQQELDHLVE 431 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-C-CEEEEEEeh----hHh---hhhhhHHHHHHHHHH
Confidence 345567788655 689999999999999999998662 21 1 223455544 111 112233333332211
Q ss_pred CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe--CCcc
Q 018281 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC--RDRA 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~--~Drp 279 (358)
. .. +. ..|.+.+ +..+|.|.+ ..+|
T Consensus 432 e-l~--------------------~~----------------------------~~V~v~~----~vAiISvVG~~~~~~ 458 (521)
T PLN02551 432 E-LE--------------------KI----------------------------AVVNLLQ----GRSIISLIGNVQRSS 458 (521)
T ss_pred H-hh--------------------cC----------------------------CeEEEeC----CEEEEEEEccCCCCc
Confidence 1 10 00 1133222 455677765 3689
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEEecCCceEEE-EEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQE-YYIRHMDGCILDTEGEKERVIKCLEAAI 339 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~-F~v~~~~g~~l~~~~~~~~l~~~L~~~l 339 (358)
|++.++-++|.+.||+|......+ ..... |.|.+ ...++.-++|...+
T Consensus 459 gvaariF~aLa~~gInV~mIsqga---SeinIS~vV~~---------~d~~~Av~aLH~~F 507 (521)
T PLN02551 459 LILEKVFRVLRTNGVNVQMISQGA---SKVNISLIVND---------DEAEQCVRALHSAF 507 (521)
T ss_pred cHHHHHHHHHHHCCCCeEEEEecC---CCcEEEEEEeH---------HHHHHHHHHHHHHH
Confidence 999999999999999998876543 22333 44432 34455556666555
No 236
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.80 E-value=4.1 Score=42.01 Aligned_cols=61 Identities=16% Similarity=0.345 Sum_probs=43.8
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeCCCCCCCChhHHHHHH
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIE 99 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~ 99 (358)
....+.+...|+||.+..++.+|..+++||-..++.. .++.++-++.+ ++. ++ ++.+++|+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~-v~-~~~l~~i~ 513 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDP-VP-EEVLEELR 513 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCC-CC-HHHHHHHh
Confidence 3445566679999999999999999999999999876 56777644443 332 22 34556655
No 237
>PLN02317 arogenate dehydratase
Probab=79.45 E-value=12 Score=36.97 Aligned_cols=39 Identities=3% Similarity=0.044 Sum_probs=33.1
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~ 306 (358)
.|.|-+.-+|+||-|+++-.+|+.+|||+.+.+-.-...
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~ 321 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRK 321 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCC
Confidence 466777778999999999999999999999998765433
No 238
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=79.41 E-value=13 Score=25.83 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=28.5
Q ss_pred CCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281 276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316 (358)
Q Consensus 276 ~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~ 316 (358)
.++||+.++|-++|.+.|+++.... | ++ ..=.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 5789999999999999999999883 3 33 334566653
No 239
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=78.85 E-value=20 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.2
Q ss_pred EEEEEeC---CcchhHHHHHHHhhcCCeEEE
Q 018281 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVVF 297 (358)
Q Consensus 270 ~l~v~~~---DrpGLL~~I~~~l~~~~v~I~ 297 (358)
.|.|.+. ++||++.++.++|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 899999999999999999995
No 240
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.51 E-value=3.7 Score=42.33 Aligned_cols=61 Identities=15% Similarity=0.307 Sum_probs=43.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeCCCCCCCChhHHHHHHH
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~ 100 (358)
+..+.+...|+||.+..++..|..+++||-..++.. .+|.++-++.+ ++. ++ ++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~-v~-~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQP-VP-DEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCC-CC-HHHHHHHhc
Confidence 344556669999999999999999999999988875 56777744444 222 22 345566553
No 241
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=78.27 E-value=18 Score=35.88 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=41.6
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
..+.+.+..+|+||.|+++-+.|+.+|+|+..-...- .++...-.|+|.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 3566667778999999999999999999999888875 5555777888876
No 242
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=78.12 E-value=2.1 Score=44.10 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=33.3
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG 305 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g 305 (358)
.++|.|.||.|+..+|...|..+++|+....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 389999999999999999999999999999997754
No 243
>PLN02550 threonine dehydratase
Probab=78.01 E-value=83 Score=33.07 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=67.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCC-C---CC
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG-H---IT 109 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~-~---~~ 109 (358)
...+.|.-+||||-|.+++.+|... ||.+..-.- .-+.+ .+++...-. .++..+.|.+.|...- . ..
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVH-----TEQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeCC
Confidence 3578888999999999999999986 888765543 22222 223333222 2345677777776431 1 11
Q ss_pred C---CcccCCceee-eecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEE
Q 018281 110 A---GAKTWPSKQV-GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 110 ~---~~r~~~~~~v-~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i 161 (358)
. .|-+ -+..+ ....-..--.+.+.-|.|||-|.+++.+|.. ..||..-+=
T Consensus 489 ~~~~~~~~-LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~Y 542 (591)
T PLN02550 489 SNDLVKDH-LRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHY 542 (591)
T ss_pred CChHHhhh-hhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEe
Confidence 0 1100 00000 0001123346778889999999999998875 244544443
No 244
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=77.55 E-value=14 Score=40.89 Aligned_cols=67 Identities=7% Similarity=0.072 Sum_probs=51.2
Q ss_pred CCCEEEEecCCCC-CeEEEEE---EecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCC
Q 018281 21 NPPRASVDNSSCP-ECTVVKV---DSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK 87 (358)
Q Consensus 21 ~~p~V~~~~~~~~-~~~~v~v---~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~ 87 (358)
..|.+.+...... ....+.+ -.+...|+|+.++..+..+||.+..+.+-+ .+|..+-+|||....+.
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 6688877766532 3333444 345667899999999999999999999988 68888889999866544
No 245
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=77.44 E-value=15 Score=26.09 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.7
Q ss_pred eCCcccHHHHHHHHHHhCCCcEEEEEE
Q 018281 135 GRDRPGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 135 ~~DrpGLL~~I~~~L~~~g~nI~~A~i 161 (358)
.+|.||.++++..+|.+.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 478999999999999999999985543
No 246
>PRK09181 aspartate kinase; Validated
Probab=76.89 E-value=44 Score=34.08 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=28.2
Q ss_pred ceeEEEEEeCC--cchhHHHHHHHhhcCCeEEEEEEE
Q 018281 267 GYSVVNVKCRD--RAKLMFDIVCTLTDMQYVVFHAAI 301 (358)
Q Consensus 267 ~~t~l~v~~~D--rpGLL~~I~~~l~~~~v~I~~a~i 301 (358)
+..+|.|.+.. +||+..++-++|.+.||+|....-
T Consensus 401 ~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 401 KVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 44567776643 899999999999999999977653
No 247
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=76.85 E-value=14 Score=27.08 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=25.4
Q ss_pred EEEEE---eCCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 270 VVNVK---CRDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 270 ~l~v~---~~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
.+.|. -.+.||++.+|..+|++.|+++....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 35553 36789999999999999999997764
No 248
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.71 E-value=23 Score=24.77 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=27.3
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT 163 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T 163 (358)
.|.+.|. ++||+++++.++|.+.|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666665 689999999999999999997654433
No 249
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=76.29 E-value=17 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=27.4
Q ss_pred EEEEE---eCCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281 270 VVNVK---CRDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (358)
Q Consensus 270 ~l~v~---~~DrpGLL~~I~~~l~~~~v~I~~a~i~T 303 (358)
.|.|. -.+++|+++++.++|++.++++....-.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 45553 35789999999999999999998876543
No 250
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.19 E-value=12 Score=25.21 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.8
Q ss_pred ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEE
Q 018281 42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI 82 (358)
Q Consensus 42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~ 82 (358)
.+|.||.++++...|..+|++|....... .+|...-+|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 48899999999999999999997665533 233233346664
No 251
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=76.12 E-value=4.8 Score=34.53 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
.+.....+.||+++.+++.++++||+|..+-..
T Consensus 97 ei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 97 EIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred EEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 344445678999999999999999999987654
No 252
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=75.99 E-value=13 Score=37.32 Aligned_cols=53 Identities=8% Similarity=0.125 Sum_probs=41.7
Q ss_pred eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCc
Q 018281 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCI 321 (358)
Q Consensus 268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~ 321 (358)
.|.|-+..+|+||-|+++-++|+++|||+.+..-.-. +..-+=.|||.. +|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~-eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF-DEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE-ecCc
Confidence 4567777899999999999999999999999887643 344556788865 4554
No 253
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=75.26 E-value=27 Score=25.54 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=37.6
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 129 TAIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 129 t~v~V~---~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
+.|++. ..+.||+++++..+|+++|+++..-- + ++ ..-.|.+.. .....+...+..|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 345664 35789999999999999999996442 2 22 233455544 1221112344555555554
No 254
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.49 E-value=26 Score=24.31 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=26.7
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
.|.+.|. +.+|+++++.+.|++.|+++......
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4566664 78999999999999999999765443
No 255
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.71 E-value=27 Score=24.23 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=27.8
Q ss_pred EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281 270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS 303 (358)
Q Consensus 270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T 303 (358)
.+.+.+ .++||++.+|..+|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 355555 4789999999999999999999886544
No 256
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.42 E-value=13 Score=30.96 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=44.0
Q ss_pred EecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEE
Q 018281 27 VDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI 82 (358)
Q Consensus 27 ~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~ 82 (358)
|..-....-..+.++-.||.|.|+++-.+++..+|||+.-+.+- .+|.+--+..+.
T Consensus 64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 33333445667888999999999999999999999999988876 678775445443
No 257
>PRK08526 threonine dehydratase; Provisional
Probab=73.40 E-value=30 Score=34.42 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--C---CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--N---RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~---~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
.......+.+.-+||||-|.+++..+...+.||.+..-... . +.+.-.+.+.. .+++..+.|.+.|.+
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE 394 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 35577889999999999999999999999999998776442 1 23333333433 134666777777654
No 258
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=73.11 E-value=6.2 Score=26.38 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=25.6
Q ss_pred EEEEeC---CcchhHHHHHHHhhcCCeEEEEEEEE
Q 018281 271 VNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAIS 302 (358)
Q Consensus 271 l~v~~~---DrpGLL~~I~~~l~~~~v~I~~a~i~ 302 (358)
|+|.+. +.||+++++.++|.+.+++|......
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 445544 48999999999999999999877543
No 259
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.07 E-value=35 Score=25.21 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=30.9
Q ss_pred EEEEE---eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 130 AIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 130 ~v~V~---~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
.|+|. .+++||++++|..+|+++|+||..-. + +. ..-.|.+..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 45552 57899999999999999999998653 2 22 334455554
No 260
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.03 E-value=12 Score=25.15 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=29.9
Q ss_pred eCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 135 GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 135 ~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
.++.||.++++...|.++|++|....... .++...-.|.+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 57899999999999999999997665532 2232334455543
No 261
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=72.84 E-value=14 Score=37.25 Aligned_cols=54 Identities=4% Similarity=-0.015 Sum_probs=41.5
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCce-E-EEEEEEeCCCCc
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHA-S-QEYYIRHMDGCI 321 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a-~-d~F~v~~~~g~~ 321 (358)
..|-|-+..+|+||-|+++-+.|+++|||+.+..-.-..... + =.|||.. +|..
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~-Eg~~ 85 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV-ELFH 85 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE-EcCH
Confidence 445577777999999999999999999999999877554443 3 4788865 3443
No 262
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.64 E-value=33 Score=25.30 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=36.7
Q ss_pred eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCC-CCChHHHHHHHHHHHH
Q 018281 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRA-VGDQTRLSLMEEQLKN 198 (358)
Q Consensus 135 ~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~-~~~~~~~~~L~~~L~~ 198 (358)
.++.||+++++.++|+++|+||..-- + +. ..-.|.+.. ... + +.+.++.|.+.|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~---~~~~~-~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDP---DPNGL-DPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeC---ccccc-chHHHHHHHHHHHh
Confidence 45789999999999999999998663 2 22 334455544 121 2 22356667776665
No 263
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=69.85 E-value=31 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=26.0
Q ss_pred EEEEEeC---CcchhHHHHHHHhhcCCeEEEEEEE
Q 018281 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAI 301 (358)
Q Consensus 270 ~l~v~~~---DrpGLL~~I~~~l~~~~v~I~~a~i 301 (358)
.|.+.+. +++|+++++..+|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3556443 8899999999999999999977654
No 264
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=69.75 E-value=18 Score=27.29 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=39.3
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec--CCceEEEEEE
Q 018281 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYI 314 (358)
Q Consensus 269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~--g~~a~d~F~v 314 (358)
+.+++.+.++|+.|.+|-++-...|..|....-++. ++++.=.|-|
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 468999999999999999999999999998887765 6667666655
No 265
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.65 E-value=34 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.105 Sum_probs=25.0
Q ss_pred EEEEe---CCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 271 VNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 271 l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
|.|.+ .+.||++.++..+|.+.++++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 44543 4779999999999999999998776
No 266
>PRK11898 prephenate dehydratase; Provisional
Probab=67.57 E-value=42 Score=31.70 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=37.6
Q ss_pred eEEEEEEeCC-cccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 128 HTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 128 ~t~v~V~~~D-rpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
.+.+.+..++ +||.|+++...|+.+|+|+......- .+....-.|+|.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4555555544 69999999999999999999887776 3444566788865
No 267
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=67.20 E-value=51 Score=32.84 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
......+.+.-+||||-|.+++..+...+.||...+-.- .+ +...-.+.+.- .+++..+.+.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-------NDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 456778999999999999999997777888999666552 22 22322233333 124566777777764
No 268
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=66.85 E-value=11 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=25.4
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCCcEEEEEE
Q 018281 130 AIELIGRD---RPGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 130 ~v~V~~~D---rpGLL~~I~~~L~~~g~nI~~A~i 161 (358)
.|++.+.+ .+|.++++..+|.+++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35555554 899999999999999999975533
No 269
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.29 E-value=41 Score=23.29 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
.|.+.|. ++||+++++...|.+.|+++......
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4666664 78999999999999999999866443
No 270
>PRK14646 hypothetical protein; Provisional
Probab=65.99 E-value=74 Score=27.23 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=57.1
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecCC
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMGD 356 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~~ 356 (358)
-+...+..++..+|+.+....+...|....=..||-..+|..++= ..++.+.+++.+.|+.. -.+.-.+|++|.|=
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 355678888999999999999998887665566774433444553 57899999999999743 34567899998873
No 271
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=65.91 E-value=39 Score=22.97 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=22.8
Q ss_pred CCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 276 RDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 276 ~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
.+.||++.++.+.|.+.|+++....
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 5779999999999999999998776
No 272
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.52 E-value=27 Score=24.80 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=30.8
Q ss_pred EEEEEec--CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281 37 VVKVDSV--NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (358)
Q Consensus 37 ~v~v~~~--DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~ 82 (358)
.|.++|. ..+|+++++..+|.+.|++|.-....+.+-.+. |.|.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis--~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNIS--LIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEE--EEEe
Confidence 4566653 468999999999999999998655545433222 5554
No 273
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=65.30 E-value=39 Score=22.76 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=25.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEE
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEV 161 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i 161 (358)
.|++.+. +++|+++++...|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 8899999999999999999975443
No 274
>PRK08639 threonine dehydratase; Validated
Probab=64.67 E-value=49 Score=33.07 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
.......+.+.-+||||-|.+++..+...+.||...+-.. .+.... ...+.-. ..+++..+++.+.|.+
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~-~v~v~iE-----~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETG-PVLVGIE-----LKDAEDYDGLIERMEA 401 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCce-EEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 3556778999999999999999997777777998876542 221111 2222220 1134566777777765
No 275
>PRK14630 hypothetical protein; Provisional
Probab=63.28 E-value=67 Score=27.12 Aligned_cols=74 Identities=5% Similarity=-0.038 Sum_probs=56.3
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccCCceEEEEEecCC
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMGD 356 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 356 (358)
-+-..+..++..+|+.+........|..-.=..||-...| ++ =.+++.+.+++...|...-...-.+|++|.|=
T Consensus 9 ~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~-idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl 82 (143)
T PRK14630 9 EVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FG-VDTLCDLHKMILLILEAVLKYNFSLEISTPGI 82 (143)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence 3455677889999999999998877665555666754444 33 35799999999988887666788899999884
No 276
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=62.99 E-value=54 Score=33.00 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=39.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~ 176 (358)
.+.|.+..+|+||-|+++..+|+.+|+|+...+... ......-.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 567777779999999999999999999999877765 3344455788876
No 277
>PRK14645 hypothetical protein; Provisional
Probab=61.98 E-value=1e+02 Score=26.38 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=55.8
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEecCC
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV--SEVSKFSFYSMGD 356 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~~~ 356 (358)
+-..+..++..+|+.+...++...|..-.=..||-..+|..+.= ..++.+.+++...|+... ...-.++++|.|=
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 87 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPGP 87 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCCC
Confidence 55667888999999999999987776544455564334545553 579999999999997543 4677899999873
No 278
>PRK08841 aspartate kinase; Validated
Probab=61.63 E-value=1.7e+02 Score=28.94 Aligned_cols=112 Identities=10% Similarity=0.154 Sum_probs=66.5
Q ss_pred chHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeecCCC
Q 018281 47 GILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVG 126 (358)
Q Consensus 47 GLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v~~~~~~ 126 (358)
+.++++.+.|..+|+++.-- .+....+ .|.|.. ...+.++..+.+. + ....
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i--~~~~~~~--~~~v~~---------~~~~~~~~~~~~~--------------i--~~~~ 316 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNV--IEEADRA--QIVIKQ---------DACAKLKLVFDDK--------------I--RNSE 316 (392)
T ss_pred chHHHHHHHHHHcCCCEEEE--EecCCcE--EEEECH---------HHHHHHHHhCccc--------------E--EEeC
Confidence 35789999999999888733 2222211 344421 1122332221110 1 1224
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~ 201 (358)
+...|.+.|...||+.+++..+|.+.|+||.... .++ ..-.|.|.. +..++.-+.|++.+.
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~---~s~-~~is~vv~~----------~~~~~av~~lH~~f~ 377 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS---TEP-QSSMLVLDP----------ANVDRAANILHKTYV 377 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE---CCC-cEEEEEEeH----------HHHHHHHHHHHHHHc
Confidence 6778999999999999999999999999995332 222 333344433 334555566776664
No 279
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.85 E-value=56 Score=23.01 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.3
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCcE
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFNV 156 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI 156 (358)
.|.+.|. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4667765 67999999999999987766
No 280
>PRK14637 hypothetical protein; Provisional
Probab=60.53 E-value=1.1e+02 Score=26.14 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=56.2
Q ss_pred chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEecCC
Q 018281 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV-SEVSKFSFYSMGD 356 (358)
Q Consensus 279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~-~~~~~~~~~~~~~ 356 (358)
.|....+..++.++|+.+...++...|..-.=..+|-...| ++ =.+++++.+++..+|+... .....+|++|.|=
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V~-iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGl 83 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--VG-LDDCARVHRILVPRLEALGGVRDVFLEVSSPGI 83 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhcccccccCcEEEEeCCCC
Confidence 57778899999999999999999988776444555643333 33 3579999999998887532 3567899999873
No 281
>PRK08526 threonine dehydratase; Provisional
Probab=60.21 E-value=71 Score=31.78 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=45.2
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-----ceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-----HASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-----~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
....+.|.-+||||=|.++++.+.+.+.||....-.-... .+.=.+-+. ..+++++++|.+.|.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e------~~~~~~~~~~~~~l~ 393 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE------TKGKEHQEEIRKILT 393 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE------eCCHHHHHHHHHHHH
Confidence 4556899999999999999999999999998876543222 222222222 234677888877775
No 282
>PRK14634 hypothetical protein; Provisional
Probab=59.62 E-value=1.1e+02 Score=26.11 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=56.7
Q ss_pred hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecCC
Q 018281 280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMGD 356 (358)
Q Consensus 280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~~ 356 (358)
-+-.-+..++..+|+.+....+...|....=..||-...|..++= ..++.+.+++...|+.. -.+.-.++++|-|=
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPGI 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 445566778889999999999988876655566675456654553 57999999999999743 24567899998873
No 283
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.47 E-value=16 Score=27.37 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=24.0
Q ss_pred eCCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 275 CRDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
.++.||++++|-++|++.|++|....
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 37889999999999999999999984
No 284
>PRK09084 aspartate kinase III; Validated
Probab=59.19 E-value=2e+02 Score=28.97 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281 125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 125 ~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
..+...|+|.+. +.+|+++++..+|.++|++|....
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ 341 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT 341 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence 345667888754 689999999999999999998664
No 285
>PRK14636 hypothetical protein; Provisional
Probab=58.53 E-value=1e+02 Score=26.99 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=56.5
Q ss_pred chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecCC
Q 018281 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMGD 356 (358)
Q Consensus 279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~~ 356 (358)
+-+..-+..++..+|+.+....+...|....=..||-..+|..++ =..++.+.++|...|+.. -...-.++++|-|=
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGl 83 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGI 83 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCC
Confidence 335566778899999999999998877665556667544444455 357999999999999743 34667899998873
No 286
>PLN02317 arogenate dehydratase
Probab=58.48 E-value=71 Score=31.61 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=38.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCe---------------eEEEEEEEe
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR---------------IACVLYVND 176 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~---------------~~d~F~v~~ 176 (358)
.|.|.+.-+|+||.|+++-.+|+.+|+|+...+..-..+. ..-.|||.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~ 346 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF 346 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE
Confidence 4667777789999999999999999999998877653222 455788876
No 287
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=58.43 E-value=55 Score=22.18 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=25.0
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCCcEEEEE
Q 018281 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 130 ~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
.|++.+ .+.||+++++.+.|.+.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355554 4779999999999999999996554
No 288
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=56.65 E-value=2.3e+02 Score=28.73 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=27.0
Q ss_pred eEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 269 SVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 269 t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
.+|.+.+ ...||....+.++|++.++||.+..
T Consensus 384 a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 384 ALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 3455554 6789999999999999999999887
No 289
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.81 E-value=62 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=25.0
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCCcEEEEE
Q 018281 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 130 ~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
.|++.+ .+.||+++++...|.+.|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4679999999999999999997554
No 290
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=54.99 E-value=49 Score=24.28 Aligned_cols=54 Identities=9% Similarity=-0.003 Sum_probs=34.3
Q ss_pred CCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281 276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (358)
Q Consensus 276 ~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~ 337 (358)
.-.||++++|-++|++.|++|..... ++ +.+-++-... .+.+ +..++|.+.|..
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~---~~isftv~~~-~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE---VHVSMALHME-NAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC---CEEEEEEehh-hcCh-HHHHHHHHHHHH
Confidence 45699999999999999999999853 33 4344433222 2222 245566655553
No 291
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=54.87 E-value=1e+02 Score=36.09 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=66.9
Q ss_pred CCCEEEEecC--CCCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEE---Eec-CC-ceEEEEEEEeCCCCcCCCHH
Q 018281 254 FKPEITVERL--EDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI---SSD-GP-HASQEYYIRHMDGCILDTEG 326 (358)
Q Consensus 254 ~~~~V~v~n~--~~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i---~T~-g~-~a~d~F~v~~~~g~~l~~~~ 326 (358)
-+..+.+... ..+....+.+....+|..|.+|.-+|..+|+.|....- ... |. .-...|+++...+..+...+
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 3455555533 23356779999999999999999999999999988763 332 22 35678999887777666556
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 018281 327 EKERVIKCLEAAIRRRVSE 345 (358)
Q Consensus 327 ~~~~l~~~L~~~l~~~~~~ 345 (358)
..+.+.+++.+......+.
T Consensus 553 ~~~~~~~a~~~v~~g~~e~ 571 (1528)
T PF05088_consen 553 IRERFEEAFEAVWNGRAEN 571 (1528)
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 6678888888777665543
No 292
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=52.20 E-value=1.1e+02 Score=30.40 Aligned_cols=65 Identities=3% Similarity=-0.006 Sum_probs=42.4
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE-ecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS-SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~-T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
....+.+.-+||||=|.++.+.+...+-||...+-. ..+.....++..-.. .++++.+++.++|.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-----~~~~h~~~i~~~L~ 389 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-----NDKEDFAGLLERMA 389 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-----CCHHHHHHHHHHHH
Confidence 456789999999999999999666666699876655 333322233322222 23467777777665
No 293
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=52.11 E-value=86 Score=31.81 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=40.0
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeE-EEEEEEe
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIA-CVLYVND 176 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~-d~F~v~~ 176 (358)
....+.|.+..+|+||-|+++-+.|..+|+|+...+.... ++... -.|+|.-
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 3455667777799999999999999999999998777653 33344 5677766
No 294
>PRK09224 threonine dehydratase; Reviewed
Probab=51.80 E-value=2.9e+02 Score=28.41 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=73.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHH-HHHHHHHHHHHHcCC
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR-LSLMEEQLKNILRGC 203 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~-~~~L~~~L~~~L~~~ 203 (358)
......+.|.-+||||-|.+++..|. +.||...+-.-.+.....+|..-. .. +++. .+.|.+.|.+ .+.
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie-~~-----~~~~~~~~i~~~L~~--~gy 394 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQ-LS-----RGQEERAEIIAQLRA--HGY 394 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEE-eC-----ChhhHHHHHHHHHHH--cCC
Confidence 34566889999999999999999998 678876554433222233333222 11 1233 5677777764 122
Q ss_pred CCCcchhhccccccccccchhhh-hhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhH
Q 018281 204 DDEDSEKVARTSFSMGFTHVDRR-LHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLM 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL 282 (358)
...| + ....+.+. ++.++. |++ + ...+--.+.+.=+.|||-|
T Consensus 395 ~~~~--------l--s~ne~~k~h~r~~~g--------~~~------------~-------~~~~e~~~~~~fPerpGal 437 (504)
T PRK09224 395 PVVD--------L--SDDELAKLHVRYMVG--------GRP------------P-------KPLDERLYRFEFPERPGAL 437 (504)
T ss_pred CeEE--------C--CCCHHHHHHHHhccC--------CCC------------C-------CCCceEEEEEeCCCCCCHH
Confidence 1100 0 00111111 111110 000 0 0012235888899999999
Q ss_pred HHHHHHhhcCCeEEEEEEEE
Q 018281 283 FDIVCTLTDMQYVVFHAAIS 302 (358)
Q Consensus 283 ~~I~~~l~~~~v~I~~a~i~ 302 (358)
-++..+|. -+-||...+-.
T Consensus 438 ~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 438 LKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred HHHHHhcC-CCCeeEEEEEc
Confidence 99999777 67788888775
No 295
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=51.55 E-value=13 Score=36.59 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=32.2
Q ss_pred EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC
Q 018281 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG 305 (358)
Q Consensus 271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g 305 (358)
|+|.|.||.||..++-..|...+|++....|+..|
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 89999999999999999999999999999996544
No 296
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=51.33 E-value=73 Score=22.67 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=25.2
Q ss_pred EEEEEEec--CCcchHHHHHHHHhhCCceEEEEE
Q 018281 36 TVVKVDSV--NKPGILLEVVQVLSDLDLIITKAY 67 (358)
Q Consensus 36 ~~v~v~~~--DrpGLl~~i~~~L~~~glnI~~A~ 67 (358)
..|.+++. .+||+.+++..+|...|+++....
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~ 36 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH 36 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE
Confidence 45667653 268999999999999999997433
No 297
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=50.47 E-value=1e+02 Score=25.66 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred HHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEecC
Q 018281 285 IVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV--SEVSKFSFYSMG 355 (358)
Q Consensus 285 I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~~ 355 (358)
|...+..+|+.+...++...|....=..+|-. ++. ++ =.+++++.+.+...|+... .+...++++|-|
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~-lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG 71 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VS-LDDCEKVSRAISALLDAEDPIPEDYTLEVSSPG 71 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS-----HHHHHHHHHHHGGGTTTS----S-EEEEEE--S
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CC-HHHHHHHHHHHHHHHccccccCcceEEEEeCCC
Confidence 46778899999999999988876444444543 444 44 3689999999998887733 577899999987
No 298
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=49.53 E-value=27 Score=35.92 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=33.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC
Q 018281 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (358)
Q Consensus 130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~ 165 (358)
.++|.|.||.|+..+|...|..+++|+...+|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999997653
No 299
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=49.24 E-value=1.3e+02 Score=30.79 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=43.2
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
......+.|.-+||||-|.+++.+|.. .||...+-.-.+.....+|..-. +.+++.++.|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 345668899999999999999999997 47766554432222233333322 1134667778887765
No 300
>PRK08639 threonine dehydratase; Validated
Probab=49.04 E-value=1.3e+02 Score=30.06 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=41.1
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE-ecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS-SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~-T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
....+.+.-+||||-|.++.+.+...+-||...+-. ..+.....++..-. +.++++.+++.++|.
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE-----~~~~~h~~~i~~~L~ 400 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE-----LKDAEDYDGLIERME 400 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE-----eCCHHHHHHHHHHHH
Confidence 456689999999999999999555555588877644 12222222222212 233567777877765
No 301
>PRK14646 hypothetical protein; Provisional
Probab=48.42 E-value=1.7e+02 Score=24.93 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=59.4
Q ss_pred chHHHHHHHHhhCCceEEEEEEEeeC-CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeecCC
Q 018281 47 GILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSV 125 (358)
Q Consensus 47 GLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v~~~~~ 125 (358)
-+...+..++..+|+.+.+......+ ++++ ..++..++|..++- ..++.+-+.+...++.. +.-
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~-------------D~i 72 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISL-DDCALFNTPASEEIENS-------------NLL 72 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccH-HHHHHHHHHHHHHhCcC-------------CCC
Confidence 46677888999999999999998854 5555 44443333332322 35666666666655432 122
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcE
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNV 156 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI 156 (358)
++.+.++|.+|--..-|...-..-...|-.|
T Consensus 73 ~~~Y~LEVSSPGldRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 73 NCSYVLEISSQGVSDELTSERDFKTFKGFPV 103 (155)
T ss_pred CCCeEEEEcCCCCCCcCCCHHHHHHhCCCEE
Confidence 3667888887755555666666666666554
No 302
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=47.98 E-value=28 Score=25.00 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=30.3
Q ss_pred EEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281 37 VVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (358)
Q Consensus 37 ~v~v~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~ 82 (358)
.|+|.+ ++.||..+++.+.|+..|+||---... .+. -+|.+.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~ 45 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVD 45 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEc
Confidence 456664 577999999999999999999866322 222 346664
No 303
>PRK14634 hypothetical protein; Provisional
Probab=47.14 E-value=1.8e+02 Score=24.88 Aligned_cols=96 Identities=8% Similarity=0.054 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeec
Q 018281 45 KPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVH 123 (358)
Q Consensus 45 rpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v~~~ 123 (358)
.+-+...+..++..+|+.+.+..+... +++++- .++..++|..++- ..++.+-+.+...++.. +
T Consensus 6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lr-V~ID~~~g~~v~l-ddC~~vSr~is~~LD~~-------------d 70 (155)
T PRK14634 6 LPDLETLASATAADKGFELCGIQVLTHLQPMTLQ-VQIRRSSGSDVSL-DDCAGFSGPMGEALEAS-------------Q 70 (155)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEE-EEEECCCCCcccH-HHHHHHHHHHHHHhccc-------------c
Confidence 345667788889999999999999875 455553 4443345632322 35666666666555432 1
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCc
Q 018281 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155 (358)
Q Consensus 124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~n 155 (358)
.-+..+.++|.+|--..-|......-...|-.
T Consensus 71 ~i~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~ 102 (155)
T PRK14634 71 LLTEAYVLEISSPGIGDQLSSDRDFQTFRGFP 102 (155)
T ss_pred cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCe
Confidence 22355678888764444455555555555543
No 304
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=46.55 E-value=33 Score=23.76 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (358)
Q Consensus 136 ~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~ 176 (358)
.+++|+.+++.++|.++|+++..- .| +. ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEeh
Confidence 478999999999999999999865 22 22 334455554
No 305
>PRK14645 hypothetical protein; Provisional
Probab=45.58 E-value=1.9e+02 Score=24.69 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=57.1
Q ss_pred cCCcchHHHHHHHHhhCCceEEEEEEEeeC-CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeee
Q 018281 43 VNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVG 121 (358)
Q Consensus 43 ~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v~ 121 (358)
.+...+...+..++..+|+.+.+..+...+ ++++- .+|...+|..+.- ..++.+-+.+...++..
T Consensus 6 ~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~------------ 71 (154)
T PRK14645 6 ENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRL------------ 71 (154)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhccc------------
Confidence 344557778899999999999999998755 55553 3443233433332 34566666665555421
Q ss_pred ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 018281 122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRF 154 (358)
Q Consensus 122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~ 154 (358)
+.-+..+.++|.+|--..-|...-......|-
T Consensus 72 -d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~ 103 (154)
T PRK14645 72 -DPIEGEYRLEVESPGPKRPLFTARHFERFAGL 103 (154)
T ss_pred -ccCCCceEEEEeCCCCCCCCCCHHHHHHhCCC
Confidence 11234566777766444445555555555553
No 306
>PRK14647 hypothetical protein; Provisional
Probab=45.35 E-value=1.7e+02 Score=25.09 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=52.3
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEecC
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV--SEVSKFSFYSMG 355 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~~ 355 (358)
+-..+..++..+|+.+....+...|..-.=..||-...| ++ =..++.+.+++.+.|+... .+.-.++++|-|
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g--vs-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 83 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGG--VN-LDDCAEVSRELSEILDVEDFIPERYTLEVSSPG 83 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC--CC-HHHHHHHHHHHHHHHcccccCCCCeEEEEcCCC
Confidence 334567778999999999999988775444555633333 33 3578999999999998432 456789999887
No 307
>PRK00907 hypothetical protein; Provisional
Probab=45.05 E-value=95 Score=24.14 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe----eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS----DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t----~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
.+-+.|.|.+.+++...|..++..+.-.....++.. .|.+..-++.|.- ..++.++.|-+.|..
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhh
Confidence 378999999999999999999999988777777753 4555554455542 223567888888864
No 308
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=44.73 E-value=4.7e+02 Score=28.86 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=28.1
Q ss_pred CCCeEEEEEEe---CCcccHHHHHHHHHHhCCCcEEEE
Q 018281 125 VGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA 159 (358)
Q Consensus 125 ~~~~t~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A 159 (358)
..+.+.|+|.+ .+.+|++++|...|.++|++|...
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 34566777753 468999999999999999999755
No 309
>PLN02550 threonine dehydratase
Probab=44.70 E-value=4e+02 Score=28.07 Aligned_cols=155 Identities=8% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCC
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~ 204 (358)
.....+.|.-+||||-|.+++.+|... ||.+..-.- ..+.+.-.+.|.- .+++..+.|.+.|.+. +..
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~l~~~--g~~ 483 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-------HTEQELQALKKRMESA--QLR 483 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-------CCHHHHHHHHHHHHHC--CCC
Confidence 345678999999999999999999986 776655443 2233333333433 1346677777777652 221
Q ss_pred CCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHH
Q 018281 205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~ 284 (358)
..|.. ...+ ++ .|++.++ .+. ..+ ..--.+.+.=+.|||-|..
T Consensus 484 ~~~l~---~~~~--~~----~~LR~v~-----g~r----------------a~~-------~~E~l~~v~fPErpGAl~~ 526 (591)
T PLN02550 484 TVNLT---SNDL--VK----DHLRYLM-----GGR----------------AIV-------KDELLYRFVFPERPGALMK 526 (591)
T ss_pred eEeCC---CChH--Hh----hhhhhee-----ccc----------------ccc-------CceEEEEEEecCcCCHHHH
Confidence 10000 0001 11 2332211 000 111 1223588889999999999
Q ss_pred HHHHhhcC-CeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 285 IVCTLTDM-QYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 285 I~~~l~~~-~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
+.++|... +|.-.+=+ ..|+..-.+|.=- .+. +++.+.+.+.|.
T Consensus 527 Fl~~lg~~~nITeF~YR--~~~~~~a~vlvGi-----~v~-~~e~~~l~~~l~ 571 (591)
T PLN02550 527 FLDAFSPRWNISLFHYR--GQGETGANVLVGI-----QVP-PEEMQEFKSRAN 571 (591)
T ss_pred HHHhhCCCCceeeEEee--cCCCCCccEEEEE-----eeC-HHHHHHHHHHHH
Confidence 99988863 66555554 3344444454321 122 245566665553
No 310
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=44.68 E-value=1.2e+02 Score=21.95 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=26.3
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 130 ~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
.|++.+ .+.+|+++++.++|++.|+++......
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 466643 478999999999999999999865443
No 311
>PRK14636 hypothetical protein; Provisional
Probab=44.61 E-value=1.7e+02 Score=25.64 Aligned_cols=97 Identities=6% Similarity=-0.020 Sum_probs=56.1
Q ss_pred CCcchHHHHHHHHhhCCceEEEEEEEeeC-CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeee
Q 018281 44 NKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGV 122 (358)
Q Consensus 44 DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v~~ 122 (358)
|.+-+...+..++..+|+.+.+..+...+ ++++ ..+|..+++..++- ..++.+-+.|...++..
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~l-rV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~------------- 67 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTL-QIMAERPDTRQLVI-EDCAALSRRLSDVFDEL------------- 67 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEE-EEEEECCCCCCcCH-HHHHHHHHHHHHHhccC-------------
Confidence 34456778889999999999999988754 5555 34443333222222 35666666666555421
Q ss_pred cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCc
Q 018281 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155 (358)
Q Consensus 123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~n 155 (358)
+.-+..|.++|.+|--..-|..--..-...|-.
T Consensus 68 d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~ 100 (176)
T PRK14636 68 DPIEDAYRLEVSSPGIDRPLTRPKDFADWAGHE 100 (176)
T ss_pred cCCCCCeEEEEeCCCCCCCCCCHHHHHHhCCCe
Confidence 112345667777664444444444444444443
No 312
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.31 E-value=24 Score=26.49 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.7
Q ss_pred eCCcccHHHHHHHHHHhCCCcEEEE
Q 018281 135 GRDRPGLLSEISAVLANLRFNVAAA 159 (358)
Q Consensus 135 ~~DrpGLL~~I~~~L~~~g~nI~~A 159 (358)
.++.||++++|..+|+++|+||..-
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4688999999999999999999866
No 313
>PRK12483 threonine dehydratase; Reviewed
Probab=42.15 E-value=4.1e+02 Score=27.48 Aligned_cols=139 Identities=13% Similarity=0.179 Sum_probs=76.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHH-HHHHHHHHHHHcCC
Q 018281 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL-SLMEEQLKNILRGC 203 (358)
Q Consensus 125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~-~~L~~~L~~~L~~~ 203 (358)
.+....+.|.-+||||-|.+++..|... ||.+..-...+.....++..-. .. +++.. +.|.+.|.+ .+.
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~~-----~~~~~~~~i~~~l~~--~g~ 411 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQ-TH-----PRHDPRAQLLASLRA--QGF 411 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEE-eC-----ChhhhHHHHHHHHHH--CCC
Confidence 4566788999999999999999999988 7776655543322222332222 11 23443 666666654 121
Q ss_pred CCCcchhhccccccccccchhhh-hhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhH
Q 018281 204 DDEDSEKVARTSFSMGFTHVDRR-LHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLM 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL 282 (358)
.. ..+. ...+.+- ++.++. |++ + ....--.+.|.=|.|||=|
T Consensus 412 ~~--------~dls--dne~~k~h~r~~~g--------~~~------------~-------~~~~E~~~~v~iPE~pGa~ 454 (521)
T PRK12483 412 PV--------LDLT--DDELAKLHIRHMVG--------GRA------------P-------LAHDERLFRFEFPERPGAL 454 (521)
T ss_pred Ce--------EECC--CCHHHHHHHHhccC--------CCC------------C-------CCCceEEEEEEcCCCCcHH
Confidence 11 0010 0111111 111110 110 0 0112336888899999999
Q ss_pred HHHHHHhhc-CCeEEEEEEEEecCCceEEEE
Q 018281 283 FDIVCTLTD-MQYVVFHAAISSDGPHASQEY 312 (358)
Q Consensus 283 ~~I~~~l~~-~~v~I~~a~i~T~g~~a~d~F 312 (358)
.++.++|.. .+|.-.+=+.. |...-.+|
T Consensus 455 ~~f~~~l~~~~niTeF~YR~~--~~~~a~v~ 483 (521)
T PRK12483 455 MKFLSRLGPRWNISLFHYRNH--GAADGRVL 483 (521)
T ss_pred HHHHHHhCCCcceeeeeecCC--CCCceEEE
Confidence 999999997 36666555543 54444454
No 314
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=41.59 E-value=68 Score=22.96 Aligned_cols=33 Identities=3% Similarity=0.237 Sum_probs=23.6
Q ss_pred HHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCC
Q 018281 53 VQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ 85 (358)
Q Consensus 53 ~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~ 85 (358)
.......|..++.=.+.|.||+.+..+.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 356778999999999999999999999997543
No 315
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.56 E-value=1.2e+02 Score=21.22 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=27.4
Q ss_pred EEEEEeC---CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEE-EEEE
Q 018281 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQE-YYIR 315 (358)
Q Consensus 270 ~l~v~~~---DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~-F~v~ 315 (358)
.+.+.+. +.||+++++.++|.+.++++. ..|...... |.|.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i-----~~~~s~~~is~vv~ 46 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV-----SQAANDLNLTFVVD 46 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE-----EEeCCCCeEEEEEe
Confidence 3555553 789999999999999877662 224444444 5554
No 316
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=40.95 E-value=2.2e+02 Score=24.07 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=53.5
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEecCC
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV--SEVSKFSFYSMGD 356 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~~~ 356 (358)
+-.-+..++..+|+.+...++...|..-.=..+|-...| ++ =+.++.+.+++..+|+... .+.-.++++|-|=
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g--v~-iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi 83 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG--ID-LDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGL 83 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCC
Confidence 445567889999999999999987765544555643333 33 4689999999999997443 3677899998874
No 317
>PLN02828 formyltetrahydrofolate deformylase
Probab=40.56 E-value=2.9e+02 Score=25.89 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=50.6
Q ss_pred HHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC---CCCCCCCCcccCCceeeeecCCC
Q 018281 52 VVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG---PKGHITAGAKTWPSKQVGVHSVG 126 (358)
Q Consensus 52 i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~---~~~~~~~~~r~~~~~~v~~~~~~ 126 (358)
|++.|+++|+||.+++.++ .+|++.....+. ..+.... .+.|++.+. ..+.... . .+......
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~ 68 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFI-FDPVKWP----RAQMDEDFQEISKHFKALK-----S--VVRVPGLD 68 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEE-eCCCCCC----HHHHHHHHHHHHHhcCCcc-----e--EEEEccCC
Confidence 4788999999999999998 456665333332 2222111 244554443 2222100 0 11111111
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T 163 (358)
....|-|...-...=|.++......-.+++.=+-+.|
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~g~l~~eI~~ViS 105 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVIS 105 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhcCCCCceEEEEEe
Confidence 2234444444455556666666666655554444444
No 318
>PRK02047 hypothetical protein; Provisional
Probab=40.52 E-value=1.3e+02 Score=23.14 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=46.4
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe----eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS----DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t----~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
.+.+.|.+++.+++...|..++..+...+..+.+.+ .|.+..-++.|. +.+++.+..|-+.|..
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~------v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR------ATSREQLDNIYRALTG 83 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 478999999999999999999999988887777765 344444344443 2233566777777764
No 319
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=40.29 E-value=51 Score=23.62 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.0
Q ss_pred EEEEEeC-CcccHHHHHHHHHHhCCCcEEEE
Q 018281 130 AIELIGR-DRPGLLSEISAVLANLRFNVAAA 159 (358)
Q Consensus 130 ~v~V~~~-DrpGLL~~I~~~L~~~g~nI~~A 159 (358)
.|+|.+. +.||.+++|.+.|+++|+||-.-
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 4555544 56999999999999999999877
No 320
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=40.04 E-value=1.7e+02 Score=30.10 Aligned_cols=63 Identities=8% Similarity=0.103 Sum_probs=41.6
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~ 336 (358)
....+.|.-+||||=|..++++|... ||...+-.-.+.....+|..-. +.++++.++|.+.|.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie-----~~~~~~~~~l~~~L~ 386 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQ-----LSNPQERQEILARLN 386 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEE-----eCCHHHHHHHHHHHH
Confidence 45568999999999999999999985 5555444322333333443322 234567788887775
No 321
>PRK00907 hypothetical protein; Provisional
Probab=39.14 E-value=1.7e+02 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=37.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe----cCCeeEEEEEEEe
Q 018281 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT----HNRRIACVLYVND 176 (358)
Q Consensus 128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T----~~~~~~d~F~v~~ 176 (358)
.+-+.|.|.++++|...|..++..+.-......+.. .|.+..-++.|..
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a 69 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA 69 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE
Confidence 478999999999999999999999987666565533 4555555666665
No 322
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=37.71 E-value=1.5e+02 Score=21.04 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=25.4
Q ss_pred EEEEEeC--CcchhHHHHHHHhhcCCeEEEEEEEE
Q 018281 270 VVNVKCR--DRAKLMFDIVCTLTDMQYVVFHAAIS 302 (358)
Q Consensus 270 ~l~v~~~--DrpGLL~~I~~~l~~~~v~I~~a~i~ 302 (358)
.|.+.+. -+||++.++.++|.+.|+++......
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 4555542 37899999999999999999776543
No 323
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=37.38 E-value=1.2e+02 Score=23.09 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=36.8
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCC
Q 018281 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (358)
Q Consensus 33 ~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~ 89 (358)
.+...+.+.+.| +......|...|++|........++. ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455667777787 67777888899999987654444232 3689999999854
No 324
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=36.95 E-value=6e+02 Score=27.90 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=28.5
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281 126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 126 ~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
.+.+.|+|.+. +.||.++++..+|.++|++|..-.
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~ 352 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVG 352 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEE
Confidence 35567777765 788999999999999999987554
No 325
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=36.93 E-value=1.7e+02 Score=21.42 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (358)
Q Consensus 136 ~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~ 198 (358)
.-.||+++++.++|+++|+||..--. ++ ..-.|.+.. . .+. .+.++.|...|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~---~-~~~-~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM---E-NAE-DTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh---h-hcC-hHHHHHHHHHHHH
Confidence 35699999999999999999986532 22 233344443 1 121 1255667776665
No 326
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=36.59 E-value=69 Score=36.78 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCCEEEEecCCCCC--eEEEEEEecCCcchHHHHHHHHhhCCceEEEE
Q 018281 21 NPPRASVDNSSCPE--CTVVKVDSVNKPGILLEVVQVLSDLDLIITKA 66 (358)
Q Consensus 21 ~~p~V~~~~~~~~~--~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A 66 (358)
++|.|.+.+....+ ++.|+|+.+|.|-|+--|.+.|+.+|+.++-+
T Consensus 72 ~~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 72 GAPCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred CCceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 67899888555444 48999999999999999999999999998854
No 327
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.94 E-value=1.5e+02 Score=20.74 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=25.7
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 130 AIELIGR--DRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 130 ~v~V~~~--DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
.|.+.|. ..+|+++++..+|.+.|++|......
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g 37 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQG 37 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4566654 46899999999999999999754433
No 328
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=34.32 E-value=74 Score=26.04 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.2
Q ss_pred ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEE
Q 018281 267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA 300 (358)
Q Consensus 267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~ 300 (358)
++..+.+.+ -|-+|+|.-|.+.|++.||-|.-..
T Consensus 62 GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 62 GWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred CeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 455566654 5999999999999999999997543
No 329
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=34.11 E-value=1.4e+02 Score=22.71 Aligned_cols=50 Identities=8% Similarity=-0.035 Sum_probs=36.1
Q ss_pred ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcC
Q 018281 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCIL 322 (358)
Q Consensus 267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l 322 (358)
....+.+.+.| +....+.|...|+++....... +... ..||+.|++|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~-~~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDI-PGVG-RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCccc-CCcE-EEEEEECCCCCEE
Confidence 44457777888 6777788999999988664332 2222 5899999999875
No 330
>PRK14631 hypothetical protein; Provisional
Probab=33.56 E-value=3.3e+02 Score=23.79 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=53.6
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeC----------------CCCcCCCHHHHHHHHHHHHHHHhhc--
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHM----------------DGCILDTEGEKERVIKCLEAAIRRR-- 342 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~----------------~g~~l~~~~~~~~l~~~L~~~l~~~-- 342 (358)
+-.-+.-++..+|+.+....+...|.+-.=..||-.. .+..++ =++++.+.+++...|+..
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvt-iddC~~vSr~is~~LD~~d~ 88 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIG-VEDCVRVTQQVGAMLDVHDP 88 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcC-HHHHHHHHHHHHHHhccccc
Confidence 4456777889999999999999887665445556422 122344 357999999999999743
Q ss_pred cCCceEEEEEecCC
Q 018281 343 VSEVSKFSFYSMGD 356 (358)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (358)
-...-.++++|-|=
T Consensus 89 i~~~Y~LEVSSPGl 102 (174)
T PRK14631 89 ISGEYALEVSSPGW 102 (174)
T ss_pred CCCCeEEEEeCCCC
Confidence 24567789988773
No 331
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.13 E-value=1.7e+02 Score=20.29 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCc
Q 018281 130 AIELIGR---DRPGLLSEISAVLANLRFN 155 (358)
Q Consensus 130 ~v~V~~~---DrpGLL~~I~~~L~~~g~n 155 (358)
.|.+.|. ++||+++++..+|.+.++.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 5677776 7899999999999764333
No 332
>PRK14639 hypothetical protein; Provisional
Probab=33.07 E-value=2.9e+02 Score=23.10 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=51.6
Q ss_pred HHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEecCC
Q 018281 285 IVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV--SEVSKFSFYSMGD 356 (358)
Q Consensus 285 I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~~~ 356 (358)
+..++..+|+.+....+...|.+-.=..||- .+|. ++ =..++++.+++.++|+... ...-.++++|.|=
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id-~~~g-v~-iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 73 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYIT-KEGG-VN-LDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGL 73 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEe-CCCC-CC-HHHHHHHHHHHHHHhccccccCCCeEEEEeCCCC
Confidence 4467889999999999998877655566674 3333 44 3579999999999998543 4567899999873
No 333
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.46 E-value=1.7e+02 Score=20.23 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=26.8
Q ss_pred EEEEEeC---CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEE-EEEE
Q 018281 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQE-YYIR 315 (358)
Q Consensus 270 ~l~v~~~---DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~-F~v~ 315 (358)
.+.+.+. ++||++.++.++|.+.++.+ .+.|...... |.|.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~-----i~~~~s~~~is~~V~ 47 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM-----ICYGASNHNLCFLVK 47 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE-----EEEecCccEEEEEEe
Confidence 4566664 78999999999998754443 3344444444 5564
No 334
>PRK05925 aspartate kinase; Provisional
Probab=31.88 E-value=5.5e+02 Score=25.90 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=61.6
Q ss_pred eEEEEEEec-CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 018281 35 CTVVKVDSV-NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK 113 (358)
Q Consensus 35 ~~~v~v~~~-DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r 113 (358)
.+.|++.+. ..+|.++++.+.|..+|++|.-.. .+.. --+|.+...+- . +..++.|...|....
T Consensus 300 ~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~---sis~~i~~~~~---~-~~~~~~l~~~l~~~~------- 364 (440)
T PRK05925 300 QALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNL---GVYFTIDDDDI---S-EEYPQHLTDALSAFG------- 364 (440)
T ss_pred EEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEechhc---c-HHHHHHHHHHhcCCc-------
Confidence 344555322 256789999999999999996431 2211 22466643211 1 123444444444211
Q ss_pred cCCceeeeecCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCCcEEE
Q 018281 114 TWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAA 158 (358)
Q Consensus 114 ~~~~~~v~~~~~~~~t~v~V~~~D--rpGLL~~I~~~L~~~g~nI~~ 158 (358)
. .....+...|.|.|.. .+|+++++..+|.+.|+||..
T Consensus 365 -----~--i~~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 -----T--VSCEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred -----e--EEEECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 1 1223366678888762 478999999999999999964
No 335
>PRK14633 hypothetical protein; Provisional
Probab=29.86 E-value=3.4e+02 Score=22.94 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecCC
Q 018281 282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMGD 356 (358)
Q Consensus 282 L~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~~ 356 (358)
-..+..++..+|+.+....+...|.... ..||-...| ++ =.+++.+.++|...|+.. -.+.-.++++|-|=
T Consensus 7 ~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~G--v~-lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGl 79 (150)
T PRK14633 7 YEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENG--VS-VDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGM 79 (150)
T ss_pred HHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCC--CC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCC
Confidence 3456778999999999999987776544 444533344 33 357999999999999743 24677899998773
No 336
>PRK00341 hypothetical protein; Provisional
Probab=29.74 E-value=2.1e+02 Score=22.10 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=44.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe---eCC-EEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS---DGG-WFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (358)
Q Consensus 36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 104 (358)
+.+.|.|.+.+++-..|..++..+. .+....+.+ .+| +..-.+.+. +.++..+..|-+.|..
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~------~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV------ATDEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 7899999999999999999998877 776776654 344 444444443 2223566777777764
No 337
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=29.51 E-value=63 Score=27.66 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=28.3
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEE
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKA 66 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A 66 (358)
...+.|.-+|+||-+-++-.=|+..|.||.+-
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 45678889999999999999999999999853
No 338
>PRK14640 hypothetical protein; Provisional
Probab=28.63 E-value=3.6e+02 Score=22.82 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=53.4
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecCC
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMGD 356 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~~ 356 (358)
+...+..++..+|+.+...++...|..-.=..||-...| ++ =.+++.+.++|..+|+.. -.+.-.++++|-|=
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 82 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VS-VENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGL 82 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 445677788999999999999887765444556643444 44 357999999999999743 24577899988773
No 339
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.07 E-value=1.3e+02 Score=23.00 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=34.4
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCC
Q 018281 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (358)
Q Consensus 34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~ 89 (358)
+...+.+...|+..+ ..+...+..+|..|...-.....|+ .+++.|++|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445677777764444 5566667789999876443333444 478999999864
No 340
>PRK14632 hypothetical protein; Provisional
Probab=27.93 E-value=3.5e+02 Score=23.52 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecC
Q 018281 283 FDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMG 355 (358)
Q Consensus 283 ~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~ 355 (358)
.-+..++..+|+.+....+.. |..-.=..||-...| ++ =..++.+.++|.++|+.. -.+.-.++++|-|
T Consensus 12 ~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~G--V~-ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 82 (172)
T PRK14632 12 DMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEG--VT-IDQCAEVSRHVGLALEVEDVISSAYVLEVSSPG 82 (172)
T ss_pred HHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 445667889999999999875 443333445533334 33 357899999999999743 2456778998877
No 341
>PRK14643 hypothetical protein; Provisional
Probab=27.44 E-value=4e+02 Score=22.95 Aligned_cols=74 Identities=12% Similarity=-0.004 Sum_probs=54.3
Q ss_pred hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe---CCCCcCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEecC
Q 018281 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH---MDGCILDTEGEKERVIKCLEAAIRRR--VSEVSKFSFYSMG 355 (358)
Q Consensus 281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~---~~g~~l~~~~~~~~l~~~L~~~l~~~--~~~~~~~~~~~~~ 355 (358)
+-.-+..++..+|+.+......+.|..-.=..||.+ .+| .++ =..++.+.+++.+.|+.. -.+.-.++++|-|
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~g-gvt-ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 88 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANK-PLD-FDILIKANDLVSNKIDQFIKTSEKYLLEISSSG 88 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCC-CcC-HHHHHHHHHHHHHHhCccCCCCCCeEEEecCCC
Confidence 344566778899999999999998876655677854 223 244 357899999999999733 3456778998877
Q ss_pred C
Q 018281 356 D 356 (358)
Q Consensus 356 ~ 356 (358)
=
T Consensus 89 l 89 (164)
T PRK14643 89 I 89 (164)
T ss_pred C
Confidence 3
No 342
>PRK14638 hypothetical protein; Provisional
Probab=27.02 E-value=3.9e+02 Score=22.63 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEecCC
Q 018281 282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV--SEVSKFSFYSMGD 356 (358)
Q Consensus 282 L~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~--~~~~~~~~~~~~~ 356 (358)
-.-+..++..+|+.+....+...|..-.=..||-..+| .++ =+.++.+.+.|...|+... .+.-.++++|-|=
T Consensus 11 ~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G-~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (150)
T PRK14638 11 RKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVG-YVS-VRDCELFSREIERFLDREDLIEHSYTLEVSSPGL 85 (150)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC-CcC-HHHHHHHHHHHHHHhccccccCCceEEEEeCCCC
Confidence 34566788999999999999887765444556643334 244 2579999999999997432 4567899999873
No 343
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=26.82 E-value=82 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEE
Q 018281 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAE 160 (358)
Q Consensus 127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~ 160 (358)
....+.|.-+|+||-|-.+-.=|+..|.||...-
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItIi 37 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITII 37 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEEEE
Confidence 4567889999999999999999999999998543
No 344
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.82 E-value=1.8e+02 Score=22.21 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=35.9
Q ss_pred EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCCcCC
Q 018281 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCILD 323 (358)
Q Consensus 270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~~l~ 323 (358)
.+-+.+.++ +..+.+.|.+.|+.+...-....|.. ....||+.|++|..+.
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIE 121 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEE
Confidence 355556554 78889999999999876655433322 3467899999998753
No 345
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=24.21 E-value=2.3e+02 Score=25.97 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=63.7
Q ss_pred EEEEecCCCCC-eEEEEEEecCCcchHHHHHHHHhhCCceEEE----EEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHH
Q 018281 24 RASVDNSSCPE-CTVVKVDSVNKPGILLEVVQVLSDLDLIITK----AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYI 98 (358)
Q Consensus 24 ~V~~~~~~~~~-~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~----A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l 98 (358)
.+.++.....| ...|.+.+.|+....+.|-.+|..+|.++-. ..+|..-|.+ .+.. .+. ..-+.+
T Consensus 80 ~~~yEg~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i----~~~~-~~~-----~~d~~~ 149 (234)
T PF01709_consen 80 EITYEGYGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVI----EVSK-KDL-----DEDELM 149 (234)
T ss_dssp EEEEEEEETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEE----EEEH-CCS------HHHHH
T ss_pred EEEEEEEcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEE----EEEe-CCC-----ChHHHH
Confidence 45666443333 4577888999999999999999999998765 3334444433 2321 111 122333
Q ss_pred HHHHCCCCCCCCCcccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281 99 EKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (358)
Q Consensus 99 ~~~L~~~~~~~~~~r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~ 162 (358)
+.+|.... . ++....+. +.|+| .|.-|..+...|...|+.|.++.+.
T Consensus 150 e~aIe~Ga--e-----------Dve~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 150 EDAIEAGA--E-----------DVEEDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp HHHHHHTE--S-----------EEEECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHhCCC--c-----------EeeecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 44444211 1 11122233 44444 4888999999999999999988875
No 346
>PRK14641 hypothetical protein; Provisional
Probab=23.72 E-value=4.9e+02 Score=22.67 Aligned_cols=64 Identities=9% Similarity=0.040 Sum_probs=46.5
Q ss_pred hcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc------CCceEEEEEecCC
Q 018281 290 TDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV------SEVSKFSFYSMGD 356 (358)
Q Consensus 290 ~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~------~~~~~~~~~~~~~ 356 (358)
..+|+.+...++...|..-.=..||- .+|. ++ =.+++++.+++.+.|+... .+.-.++++|-|=
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID-~~~g-v~-lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGl 89 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLD-ADTG-IR-IDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGL 89 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEe-CCCC-CC-HHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCC
Confidence 48999999999998776544455563 3433 33 3578999999999998543 2577799999873
No 347
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=23.26 E-value=2.3e+02 Score=20.16 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred HHHHHhCCCcEEEEEEEecCCeeEEEEEEEeC
Q 018281 146 SAVLANLRFNVAAAEVWTHNRRIACVLYVNDD 177 (358)
Q Consensus 146 ~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~ 177 (358)
......+|..++.=.+.|.+|+...++.|..+
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~ 33 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPG 33 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SB
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCC
Confidence 45678899999999999999999999999873
No 348
>PRK14638 hypothetical protein; Provisional
Probab=21.77 E-value=5e+02 Score=21.98 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=51.5
Q ss_pred chHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceeeeecCC
Q 018281 47 GILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSV 125 (358)
Q Consensus 47 GLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v~~~~~ 125 (358)
-+-..+..++..+|+.+.+...... +++.+- .+|..++|. ++- ..++.+-+.|...++.. +.-
T Consensus 9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~lr-V~ID~~~G~-v~l-ddC~~vSr~is~~LD~~-------------d~i 72 (150)
T PRK14638 9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVLR-IIIDNPVGY-VSV-RDCELFSREIERFLDRE-------------DLI 72 (150)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEE-EEEECCCCC-cCH-HHHHHHHHHHHHHhccc-------------ccc
Confidence 3556677889999999999999875 455554 344323442 221 35666666666555421 111
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 018281 126 GDHTAIELIGRDRPGLLSEISAVLANLRF 154 (358)
Q Consensus 126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~ 154 (358)
+..+.++|.+|--..-|...-..-...|-
T Consensus 73 ~~~Y~LEVSSPGldRpL~~~~~f~r~~G~ 101 (150)
T PRK14638 73 EHSYTLEVSSPGLDRPLRGPKDYVRFTGK 101 (150)
T ss_pred CCceEEEEeCCCCCCCCCCHHHHHHhCCC
Confidence 24456666655433334444444444443
No 349
>PRK08841 aspartate kinase; Validated
Probab=21.52 E-value=1.2e+02 Score=29.95 Aligned_cols=62 Identities=5% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103 (358)
Q Consensus 33 ~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~ 103 (358)
.+...|.+++...||+.+++..+|...|+||..-. .++ .--+|.|...+. ++..+.|.+.+.
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~---~s~-~~is~vv~~~~~-----~~av~~lH~~f~ 377 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS---TEP-QSSMLVLDPANV-----DRAANILHKTYV 377 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE---CCC-cEEEEEEeHHHH-----HHHHHHHHHHHc
Confidence 46778999999999999999999999999995322 333 222355532211 245666666664
No 350
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.47 E-value=3.3e+02 Score=21.00 Aligned_cols=51 Identities=14% Similarity=-0.031 Sum_probs=34.0
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCC
Q 018281 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (358)
Q Consensus 33 ~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~ 89 (358)
.+...+.+...| +..+..-|...|..|...-..+..|.. .|++.|++|+.+
T Consensus 67 ~~~~~~~~~v~d----~d~~~~~l~~~G~~v~~~~~~~~~g~~--~~~~~DPdG~~~ 117 (122)
T cd08355 67 AGTQGVYVVVDD----VDAHYERARAAGAEILREPTDTPYGSR--EFTARDPEGNLW 117 (122)
T ss_pred CceEEEEEEECC----HHHHHHHHHHCCCEEeeCccccCCCcE--EEEEECCCCCEE
Confidence 345667777777 466666777789988864333443432 378999999853
No 351
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.75 E-value=2.7e+02 Score=21.24 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=32.8
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCC
Q 018281 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (358)
Q Consensus 35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~ 89 (358)
...+.+...| +.++...|...|..|...-..+..|. -.|++.|++|+.+
T Consensus 67 ~~~~~~~v~d----id~~~~~l~~~G~~~~~~~~~~~~g~--~~~~~~DP~G~~i 115 (119)
T cd08359 67 GLILNFEVDD----VDAEYERLKAEGLPIVLPLRDEPWGQ--RHFIVRDPNGVLI 115 (119)
T ss_pred eEEEEEEECC----HHHHHHHHHhcCCCeeeccccCCCcc--eEEEEECCCCCEE
Confidence 3456666666 67788888889999886533333332 2367889999853
Done!