BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018282
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
Length = 60
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 129 GCSCRGDLALVHYGCALKWFVNHGSTACEICG 160
C C G+L VH C W +TAC+ICG
Sbjct: 23 ACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 111 NTDLEMGPCHNQDTLIELGCSCRGD-LALVHYGCALKWFVNHGSTACEICGNGAKNIRVS 169
N + M ++ L E GD L LK++ N A E+ GA I V
Sbjct: 673 NMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTN---LAVELEKAGAHIIAVX 729
Query: 170 DFKKVL---IALKDFEALRERTATGEPNPAHVHTSSGV 204
D +L A F+ALRE ATG P H H +SG+
Sbjct: 730 DMAGLLKPAAAKVLFKALRE--ATGLPIHFHTHDTSGI 765
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 111 NTDLEMGPCHNQDTLIELGCSCRGD-LALVHYGCALKWFVNHGSTACEICGNGAKNIRVS 169
N + M ++ L E GD L LK++ N A E+ GA I V
Sbjct: 673 NMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTN---LAVELEKAGAHIIAVX 729
Query: 170 DFKKVL---IALKDFEALRERTATGEPNPAHVHTSSGV 204
D +L A F+ALRE ATG P H H +SG+
Sbjct: 730 DMAGLLKPAAAKVLFKALRE--ATGLPIHFHTHDTSGI 765
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 31.6 bits (70), Expect = 0.78, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C +W + + CE+C
Sbjct: 35 CHCTGSLHFVHQACLQQWIKSSDTRCCELC 64
>pdb|3TV0|A Chain A, Structure Of Dynactin P27 Subunit
pdb|3TV0|B Chain B, Structure Of Dynactin P27 Subunit
Length = 194
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 44 CAESDKRGDVALAYLGITLPVQKPEAEATPKSNGDTQQPDGEKNLVNNESGYVQFISPDG 103
C ES+ RGDV + + P + AEA P G+ + + ++N Y I+PD
Sbjct: 22 CVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIIN---AYPDNITPDT 78
Query: 104 E-----VFICNTNTDLEMGPCHNQ 122
E I TN E+G C++Q
Sbjct: 79 EDPEPKPMIIGTNNVFEVG-CYSQ 101
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 55 LAYLGITLPVQKPEAEATPKSNGDTQQP---DGEKNLVNNESGYVQFISPDGEVFICNTN 111
+A + +L V+KPE +A + N TQ D E+NL+ + + ++ V IC
Sbjct: 246 IALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVD--KILATGANVIICQKG 303
Query: 112 TD 113
D
Sbjct: 304 ID 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,108,663
Number of Sequences: 62578
Number of extensions: 385662
Number of successful extensions: 627
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 9
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)