BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018282
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 115 EMGPCHNQDTLIELGCSCRGDLALVHYGCALKWF---VNHGS-----TACEICGNGAKNI 166
+M + + LIE C C G L VH C KW +N GS T CE+C
Sbjct: 556 QMAAASSSNLLIE-PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCK------ 608
Query: 167 RVSDFKKVLIALKDFE 182
+K+ + L+DF+
Sbjct: 609 -----EKLELNLEDFD 619
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 115 EMGPCHNQDTLIELGCSCRGDLALVHYGCALKWF---VNHGS-----TACEICGNGAKNI 166
+M + + LIE C C G L VH C KW +N GS T CE+C
Sbjct: 556 QMAAASSSNLLIE-PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCK------ 608
Query: 167 RVSDFKKVLIALKDFE 182
+K+ + L+DF+
Sbjct: 609 -----EKLELNLEDFD 619
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 115 EMGPCHNQDTLIELGCSCRGDLALVHYGCALKWF---VNHGS-----TACEICGNGAKNI 166
+M + + LIE C C G L VH C KW +N GS T CE+C
Sbjct: 557 QMAAASSSNLLIE-PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCK------ 609
Query: 167 RVSDFKKVLIALKDFE 182
+K+ + L+DF+
Sbjct: 610 -----EKLQLNLEDFD 620
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 115 EMGPCHNQDTLIELGCSCRGDLALVHYGCALKWF---VNHGS-----TACEICGNGAKNI 166
+M + + LIE C C G L VH C KW +N GS T CE+C
Sbjct: 558 QMAAASSSNLLIE-PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCK------ 610
Query: 167 RVSDFKKVLIALKDFE 182
+K+ + L+DF+
Sbjct: 611 -----EKLQLNLEDFD 621
>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=Homo sapiens GN=MXRA5 PE=2
SV=3
Length = 2828
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 35 GLPSCRVCQCAESDKRGDVALAYLGITLPVQKPEAEATPKSNGDTQQPDGEKNLVNNESG 94
LPS R+ Q A D + +V L Y+G PE EATP +N TQ G L S
Sbjct: 1512 ALPSPRISQ-ASRDSKENVFLNYVG------NPETEATPVNNEGTQHMSGPNELSTPSS- 1563
Query: 95 YVQFISPDGEVFICNTNTDLE 115
D + F +T +LE
Sbjct: 1564 -------DQDAFNLSTKLELE 1577
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVS 169
C C G + H C +KW GS +CE+C + I +S
Sbjct: 159 CRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAIS 198
>sp|C4Y5P7|RTC1_CLAL4 Restriction of telomere capping protein 1 OS=Clavispora lusitaniae
(strain ATCC 42720) GN=RTC1 PE=3 SV=1
Length = 1158
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 85 EKNLVNNESGYVQFISPDGEVF---ICNTNTDLEMG------PCHNQDTLIELGCSCRGD 135
EK LVN E+ +F P+ E F C++ + + PC ++ L C RG
Sbjct: 1076 EKLLVN-ETSKAKF-GPNSENFGYWYCDSCSRRQSNCIYCGEPCRGLTVVVSLNCGHRG- 1132
Query: 136 LALVHYGCALKWFVNHGSTAC 156
H+GC +WF++ ST C
Sbjct: 1133 ----HFGCLQEWFLDEQSTGC 1149
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 87 NLVNNESGYVQFIS-PDGEVFICNTNTDLEMGP---------CH---NQDTLIELGCSCR 133
+LVN + YV +S DG++ T P CH +Q+ L+ C C
Sbjct: 32 SLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLS-PCECT 90
Query: 134 GDLALVHYGCALKWFVNHGSTACEIC 159
G L +H C W + ++ CE+C
Sbjct: 91 GTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 87 NLVNNESGYVQFIS-PDGEVFICNTNTDLEMGP---------CH---NQDTLIELGCSCR 133
+LVN + YV +S DG++ T P CH +Q+ L+ C C
Sbjct: 32 SLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLS-PCECT 90
Query: 134 GDLALVHYGCALKWFVNHGSTACEIC 159
G L +H C W + ++ CE+C
Sbjct: 91 GTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 87 NLVNNESGYVQFIS-PDGEVFICNTNTDLEMGP---------CH---NQDTLIELGCSCR 133
+LVN + YV +S DG++ T P CH +Q+ L+ C C
Sbjct: 32 SLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLS-PCECT 90
Query: 134 GDLALVHYGCALKWFVNHGSTACEIC 159
G L +H C W + ++ CE+C
Sbjct: 91 GTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 87 NLVNNESGYVQFIS-PDGEVFICNTNTDLEMGP---------CH---NQDTLIELGCSCR 133
+LVN + YV +S DG++ T P CH +Q+ L+ C C
Sbjct: 32 SLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLS-PCECT 90
Query: 134 GDLALVHYGCALKWFVNHGSTACEIC 159
G L +H C W + ++ CE+C
Sbjct: 91 GTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G + H C LKW GS CE+C
Sbjct: 182 CRCDGSVRYTHQLCLLKWISERGSWTCELC 211
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G + H C LKW GS CE+C
Sbjct: 184 CRCDGSVRYTHQLCLLKWISERGSWTCELC 213
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 87 NLVNNESGYVQFIS-PDGEVF-----ICNTNTDLEMGP----CHNQDTLIEL--GCSCRG 134
+LVN + YV +S DG++ T + P CH T +L C C G
Sbjct: 31 SLVNGQPQYVMQVSAKDGQLLSTVVRTLTTQSSFNDHPMCRICHEGSTQEDLLSPCECTG 90
Query: 135 DLALVHYGCALKWFVNHGSTACEIC 159
L +H C W + ++ CE+C
Sbjct: 91 TLGTIHRSCLEHWLSSSNTSYCELC 115
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G + H C LKW GS CE+C
Sbjct: 186 CRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 111 NTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIR 167
NT+ C ++ + C+C+ + +VH C +W +T C+IC NG NI+
Sbjct: 6 NTNTHCWICKDEYNVSTNFCNCKNEFKIVHKNCLEEWINFSHNTKCKIC-NGKYNIK 61
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEICG 160
C C G+L VH C W +TAC+ICG
Sbjct: 24 CGCTGELENVHRSCLSTWLTISRNTACQICG 54
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G + H C ++W GS +CE+C
Sbjct: 126 CRCDGSVRCTHQPCLIRWISERGSWSCELC 155
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G + H C ++W GS +CE+C
Sbjct: 126 CRCDGSVRCTHQPCLIRWISERGSWSCELC 155
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 87 NLVNNESGYVQFIS-PDGEVFICNTNT-------DLEMGP-CHNQDTLIEL--GCSCRGD 135
+LVN + YV +S DG++ T D M CH T +L C C G
Sbjct: 31 SLVNGQPQYVMQVSAKDGQLLSTVVRTLTTQSFNDRPMCRICHEGSTQEDLLSPCECTGT 90
Query: 136 LALVHYGCALKWFVNHGSTACEIC 159
L +H C W + ++ CE+C
Sbjct: 91 LGTIHRSCLEHWLSSSNTSYCELC 114
>sp|Q54EQ7|Y1392_DICDI Uncharacterized protein DDB_G0291392 OS=Dictyostelium discoideum
GN=DDB_G0291392 PE=2 SV=1
Length = 468
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 86 KNLVNNESGYVQFISPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGD 135
KNL N SG+ QF + DG V I + N ++E+ D I LGCS D
Sbjct: 170 KNLQNGASGWFQFKATDGSVSIQSGNGEMEV-----VDININLGCSSTFD 214
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 51 GDVALAYLGITLPVQKPEAEATPKSNGDTQQPDGEKNLVNNESGYVQFISPDGE--VFIC 108
GDVA A TL + P A+ SN ++ S +P + + +C
Sbjct: 26 GDVADASQTSTLNEKSPGRSASRSSN------------ISKASSPTTGTAPRSQSRLSVC 73
Query: 109 NTNTDLEMGPCH---NQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEIC 159
+ D+ CH ++++ + C C G L VH C +W + + CE+C
Sbjct: 74 PSTQDI-CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC 126
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVS 169
C C G + H C +KW G +CE+C I +S
Sbjct: 179 CRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS 218
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C+C G+L +VH C W +TAC++C
Sbjct: 30 CACTGELDVVHPQCLSTWLTVSRNTACQMC 59
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G + VH C ++W + T CE+C
Sbjct: 25 CKCTGSIRYVHQECLVEWLGHSKKTHCELC 54
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVS 169
C C G + H C +KW G +CE+C I +S
Sbjct: 178 CRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS 217
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C KW + ++ CE+C
Sbjct: 83 CDCTGTLGTVHKSCLEKWLSSSNTSYCELC 112
>sp|Q6BXX5|RTC1_DEBHA Restriction of telomere capping protein 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RTC1 PE=3 SV=2
Length = 1386
Score = 32.3 bits (72), Expect = 6.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 118 PCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTAC 156
PC + + L C RG H+GC +WF++ + C
Sbjct: 1344 PCKGLNIVTSLSCGHRG-----HFGCLREWFIDQENIVC 1377
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 119 CH---NQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEIC 159
CH ++++ + C C G L VH C +W + + CE+C
Sbjct: 83 CHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC 126
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C +W + + CE+C
Sbjct: 93 CHCTGSLHFVHQACLQQWIKSSDTRCCELC 122
>sp|Q9USR3|STT4_SCHPO Phosphatidylinositol 4-kinase stt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=stt4 PE=3 SV=1
Length = 1877
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 196 AHVHTSSGVDPDAVAAIRRQRLSEISLWFSPHSSNNNHTYSNSTAVSQVVSEQPLSTVTE 255
A V + D V + L+ + +PHSSNNN T++ +T +V L E
Sbjct: 125 ALVRQHRELSSDIVKFLNSIFLALTRILNTPHSSNNNPTHTKTTIFEKVFYASHLGFFFE 184
Query: 256 DVV-----AAENPATKWAVEGTGILLATGL 280
++ A A WA+E +L + L
Sbjct: 185 EIADACISALPQDACLWAMEVCNTILVSDL 214
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C KW + ++ CE+C
Sbjct: 80 CDCTGTLGTVHKTCLEKWLSSSNTSYCELC 109
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C +W + + CE+C
Sbjct: 97 CHCTGSLHFVHQACLQQWIKSSDTRCCELC 126
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C KW + ++ CE+C
Sbjct: 80 CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C KW + ++ CE+C
Sbjct: 80 CDCTGTLGTVHKTCLEKWLSSSNTSYCELC 109
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C KW + ++ CE+C
Sbjct: 80 CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 CSCRGDLALVHYGCALKWFVNHGSTACEIC 159
C C G L VH C KW + ++ CE+C
Sbjct: 80 CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,390,282
Number of Sequences: 539616
Number of extensions: 6039695
Number of successful extensions: 14209
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 14166
Number of HSP's gapped (non-prelim): 62
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)