Query 018282
Match_columns 358
No_of_seqs 125 out of 252
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.6 1.5E-16 5.3E-21 118.0 2.3 54 101-164 5-58 (60)
2 2d8s_A Cellular modulator of i 99.4 7.1E-14 2.4E-18 108.6 2.7 58 100-165 13-70 (80)
3 2ep4_A Ring finger protein 24; 97.0 0.0006 2E-08 49.6 3.9 55 100-168 13-67 (74)
4 2kiz_A E3 ubiquitin-protein li 96.7 0.00094 3.2E-08 47.9 3.1 54 101-168 13-66 (69)
5 1v87_A Deltex protein 2; ring- 96.5 0.0012 4E-08 51.7 2.7 35 127-166 58-95 (114)
6 2ecm_A Ring finger and CHY zin 96.5 0.00093 3.2E-08 45.7 1.7 51 101-164 4-54 (55)
7 2l0b_A E3 ubiquitin-protein li 96.3 0.00087 3E-08 51.4 0.9 49 102-164 40-88 (91)
8 1iym_A EL5; ring-H2 finger, ub 96.2 0.001 3.4E-08 45.7 0.6 49 101-163 4-53 (55)
9 1x4j_A Ring finger protein 38; 96.2 0.00085 2.9E-08 49.1 0.2 50 101-164 22-71 (75)
10 2ect_A Ring finger protein 126 96.2 0.00081 2.8E-08 49.3 -0.1 51 101-165 14-64 (78)
11 2ct0_A Non-SMC element 1 homol 96.0 0.0021 7.1E-08 49.7 1.4 58 93-165 6-64 (74)
12 2ecl_A Ring-box protein 2; RNF 95.9 0.0027 9.1E-08 48.0 1.8 35 124-164 41-75 (81)
13 1t1h_A Gspef-atpub14, armadill 95.8 0.0046 1.6E-07 45.3 2.6 48 101-164 7-54 (78)
14 3ztg_A E3 ubiquitin-protein li 95.6 0.014 4.7E-07 44.0 4.5 49 101-164 12-61 (92)
15 2ea6_A Ring finger protein 4; 95.4 0.004 1.4E-07 43.9 1.0 55 100-164 13-67 (69)
16 3dpl_R Ring-box protein 1; ubi 95.4 0.0078 2.7E-07 48.7 2.8 55 101-164 36-100 (106)
17 2ecw_A Tripartite motif-contai 95.2 0.02 7E-07 41.5 4.2 50 100-164 17-70 (85)
18 2ecj_A Tripartite motif-contai 95.0 0.013 4.6E-07 40.1 2.7 45 100-159 13-58 (58)
19 2ecv_A Tripartite motif-contai 95.0 0.013 4.4E-07 42.6 2.6 50 100-164 17-70 (85)
20 2d8t_A Dactylidin, ring finger 95.0 0.0077 2.6E-07 43.7 1.4 47 101-164 14-60 (71)
21 2ecy_A TNF receptor-associated 94.8 0.01 3.5E-07 42.3 1.7 48 101-164 14-61 (66)
22 2ct2_A Tripartite motif protei 94.7 0.025 8.5E-07 41.7 3.6 55 100-165 13-68 (88)
23 2yur_A Retinoblastoma-binding 94.7 0.012 4E-07 43.2 1.8 48 102-164 15-63 (74)
24 3fl2_A E3 ubiquitin-protein li 94.6 0.019 6.4E-07 45.8 2.9 48 102-165 52-99 (124)
25 1chc_A Equine herpes virus-1 r 94.5 0.014 4.8E-07 41.4 1.8 50 101-166 4-53 (68)
26 2ysl_A Tripartite motif-contai 94.4 0.015 5E-07 41.8 1.7 50 100-164 18-68 (73)
27 2y43_A E3 ubiquitin-protein li 94.4 0.037 1.3E-06 42.3 4.1 47 102-165 22-69 (99)
28 2csy_A Zinc finger protein 183 94.3 0.044 1.5E-06 40.5 4.2 46 102-164 15-60 (81)
29 3ng2_A RNF4, snurf, ring finge 94.2 0.0089 3.1E-07 42.6 0.1 55 100-164 8-62 (71)
30 2ysj_A Tripartite motif-contai 94.2 0.047 1.6E-06 38.4 3.8 45 100-159 18-63 (63)
31 4a0k_B E3 ubiquitin-protein li 94.1 0.0097 3.3E-07 49.4 0.3 25 138-164 87-111 (117)
32 2ckl_B Ubiquitin ligase protei 94.1 0.017 5.8E-07 48.1 1.6 47 102-164 54-101 (165)
33 2ecn_A Ring finger protein 141 93.9 0.017 5.7E-07 41.4 1.1 47 101-165 14-60 (70)
34 2xeu_A Ring finger protein 4; 93.6 0.012 4E-07 40.9 -0.2 53 102-164 3-55 (64)
35 2djb_A Polycomb group ring fin 93.5 0.044 1.5E-06 39.7 2.7 48 102-166 15-63 (72)
36 1jm7_A BRCA1, breast cancer ty 92.7 0.039 1.3E-06 42.5 1.5 48 102-164 21-69 (112)
37 1z6u_A NP95-like ring finger p 92.5 0.071 2.4E-06 44.8 3.0 49 102-166 78-126 (150)
38 3hct_A TNF receptor-associated 92.4 0.068 2.3E-06 42.4 2.6 50 100-165 16-65 (118)
39 2egp_A Tripartite motif-contai 92.2 0.015 5.2E-07 42.2 -1.2 50 100-164 10-64 (79)
40 4ayc_A E3 ubiquitin-protein li 91.3 0.059 2E-06 44.0 1.2 48 102-166 53-100 (138)
41 3lrq_A E3 ubiquitin-protein li 91.3 0.092 3.2E-06 40.7 2.2 47 102-164 22-69 (100)
42 2ckl_A Polycomb group ring fin 90.3 0.18 6.1E-06 39.2 3.1 49 100-165 13-62 (108)
43 1wgm_A Ubiquitin conjugation f 90.2 0.31 1.1E-05 38.4 4.4 68 102-185 22-89 (98)
44 1g25_A CDK-activating kinase a 90.2 0.1 3.6E-06 36.9 1.5 52 102-164 3-54 (65)
45 1e4u_A Transcriptional repress 90.0 0.13 4.5E-06 39.2 2.0 54 100-165 9-62 (78)
46 2c2l_A CHIP, carboxy terminus 89.7 0.5 1.7E-05 40.9 5.7 47 102-164 208-254 (281)
47 3nw0_A Non-structural maintena 88.6 0.1 3.5E-06 47.5 0.5 50 102-166 180-230 (238)
48 3l11_A E3 ubiquitin-protein li 88.1 0.1 3.6E-06 40.8 0.2 47 102-164 15-61 (115)
49 1rmd_A RAG1; V(D)J recombinati 88.0 0.33 1.1E-05 38.0 3.0 48 102-165 23-70 (116)
50 1jm7_B BARD1, BRCA1-associated 87.7 0.19 6.4E-06 39.8 1.5 71 101-191 21-93 (117)
51 4ap4_A E3 ubiquitin ligase RNF 87.0 0.12 4.2E-06 40.0 0.1 56 100-165 5-60 (133)
52 2kre_A Ubiquitin conjugation f 86.9 0.43 1.5E-05 37.7 3.2 65 102-183 29-93 (100)
53 4ap4_A E3 ubiquitin ligase RNF 86.8 0.1 3.5E-06 40.5 -0.5 55 100-164 70-124 (133)
54 2y1n_A E3 ubiquitin-protein li 86.7 0.27 9.4E-06 48.3 2.3 51 101-167 331-381 (389)
55 2f42_A STIP1 homology and U-bo 85.8 0.61 2.1E-05 41.2 3.9 66 102-183 106-171 (179)
56 2kr4_A Ubiquitin conjugation f 84.0 1.6 5.3E-05 33.2 5.0 67 102-185 14-80 (85)
57 3k1l_B Fancl; UBC, ring, RWD, 84.0 0.36 1.2E-05 47.8 1.7 53 102-164 308-372 (381)
58 2vje_A E3 ubiquitin-protein li 83.8 0.29 9.7E-06 35.5 0.7 50 101-166 7-58 (64)
59 3hcs_A TNF receptor-associated 82.5 0.64 2.2E-05 38.7 2.4 49 101-165 17-65 (170)
60 1wim_A KIAA0161 protein; ring 81.7 1.5 5.1E-05 33.3 4.0 71 102-187 5-84 (94)
61 3htk_C E3 SUMO-protein ligase 75.4 2.8 9.5E-05 39.7 4.6 69 102-188 181-254 (267)
62 3knv_A TNF receptor-associated 74.0 0.71 2.4E-05 38.4 0.2 47 101-163 30-76 (141)
63 2yu4_A E3 SUMO-protein ligase 72.3 2 6.8E-05 33.0 2.4 69 102-187 7-85 (94)
64 3s8f_C Cytochrome C oxidase po 61.8 3.7 0.00013 28.3 1.7 16 336-351 18-33 (34)
65 4ic3_A E3 ubiquitin-protein li 59.6 1.4 5E-05 32.3 -0.6 45 102-166 24-68 (74)
66 1yyb_A Programmed cell death p 52.2 6.2 0.00021 25.5 1.5 16 207-222 5-20 (27)
67 2bay_A PRE-mRNA splicing facto 46.8 9.7 0.00033 27.6 2.0 24 139-164 26-49 (61)
68 3v43_A Histone acetyltransfera 33.6 6.9 0.00024 31.3 -0.6 57 100-162 3-70 (112)
69 2ea5_A Cell growth regulator w 31.9 37 0.0013 24.7 3.1 46 101-166 14-59 (68)
70 2ecg_A Baculoviral IAP repeat- 31.7 18 0.00063 26.2 1.5 45 102-166 25-69 (75)
71 3t6p_A Baculoviral IAP repeat- 28.9 6.4 0.00022 37.6 -1.8 46 101-166 294-339 (345)
72 2lbm_A Transcriptional regulat 28.4 30 0.001 29.7 2.5 66 102-182 63-137 (142)
73 2vje_B MDM4 protein; proto-onc 26.0 36 0.0012 24.2 2.1 50 101-166 6-57 (63)
74 1bor_A Transcription factor PM 25.2 7.6 0.00026 26.9 -1.5 43 102-164 6-48 (56)
75 2k9h_A Glycoprotein; hantaviru 24.3 34 0.0011 26.0 1.7 30 151-192 1-30 (57)
76 2jxn_A Uncharacterized protein 23.8 31 0.0011 29.3 1.7 17 207-223 3-19 (127)
77 2lri_C Autoimmune regulator; Z 22.6 14 0.00046 27.7 -0.7 49 100-163 10-60 (66)
78 1znf_A 31ST zinc finger from X 20.9 29 0.00099 18.6 0.6 12 155-166 3-14 (27)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.60 E-value=1.5e-16 Score=117.99 Aligned_cols=54 Identities=33% Similarity=0.668 Sum_probs=46.3
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+..||||+. +. ++.+++||.|+|+++++|+.||++|++.+++.+||+|++.|.
T Consensus 5 ~~~~CrIC~~----~~------~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNE----EL------GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTE----EC------SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeec----CC------CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4667999982 11 123679999999999999999999999999999999999986
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.1e-14 Score=108.62 Aligned_cols=58 Identities=24% Similarity=0.597 Sum_probs=48.5
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
+.+.+||||+. +.+ .++.+++||.|+|++.++|++|+++|+..+++.+|++|++.|..
T Consensus 13 ~~~~~C~IC~~--~~~------~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHC--EGD------DESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCC--CCC------SSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCc--ccc------CCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 44678999982 221 23457899999999999999999999999999999999999863
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0006 Score=49.56 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=37.7
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRV 168 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~ 168 (358)
..+..|.||+. +.+. ......++|. -..|+.|+++|++.+. +|.+|.+.+..+..
T Consensus 13 ~~~~~C~IC~~--~~~~-----~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLE--DFKP-----RDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCC--BCCS-----SSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCc--ccCC-----CCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccccc
Confidence 34678999982 2221 2234556763 2489999999998754 89999998865543
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.72 E-value=0.00094 Score=47.91 Aligned_cols=54 Identities=24% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRV 168 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~ 168 (358)
.+..|.||+. ..+. ......++|. -..|+.|+.+|++.+ .+|.+|...+....+
T Consensus 13 ~~~~C~IC~~--~~~~-----~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLS--ILEE-----GEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTB--CCCS-----SSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCc--cccC-----CCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccCcCC
Confidence 3567999972 2221 2345678874 247999999999875 469999998865443
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.52 E-value=0.0012 Score=51.70 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=28.0
Q ss_pred eecccccChhhhhHHHHHHHHHHh---cCCceeeccccccccc
Q 018282 127 ELGCSCRGDLALVHYGCALKWFVN---HGSTACEICGNGAKNI 166 (358)
Q Consensus 127 ~lPC~CKGSL~~vHr~ClekWf~~---KGnttCEIC~~~a~NV 166 (358)
.++|.- ..|+.|+++|+.. +...+|.+|...|...
T Consensus 58 ~~~C~H-----~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 58 LTKCSH-----AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp ESSSCC-----EECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred cCCCCC-----cccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 566752 6899999999976 5678999999998643
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.49 E-value=0.00093 Score=45.68 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=36.7
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+.+|.||+. +... .......++|. -..|+.|+++|++.+ .+|.+|.+.+.
T Consensus 4 ~~~~C~IC~~--~~~~----~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLE--DIHT----SRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCC--CCCT----TTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccCh--hhcC----CCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4678999982 2221 12346778874 258999999999987 88999998754
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.33 E-value=0.00087 Score=51.43 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|-||+ .+.+. .+....+||+ -..|+.|+.+|++. +.+|.+|.+.+.
T Consensus 40 ~~~C~IC~--~~~~~-----~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICC--SEYVK-----GDVATELPCH-----HYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTT--EECCT-----TCEEEEETTT-----EEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred CCCCcccC--hhhcC-----CCcEEecCCC-----ChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 55699997 22221 2346678875 35899999999975 459999998764
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.21 E-value=0.001 Score=45.66 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=34.1
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeec-ccccChhhhhHHHHHHHHHHhcCCceeecccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELG-CSCRGDLALVHYGCALKWFVNHGSTACEICGNGA 163 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lP-C~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a 163 (358)
.+.+|-||+ .+.+. ++....++ |+- ..|+.|+++|++. +.+|.+|.+.+
T Consensus 4 ~~~~C~IC~--~~~~~-----~~~~~~~~~C~H-----~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCL--AELED-----GEEARFLPRCGH-----GFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTC--CCCCT-----TSCCEECSSSCC-----EECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCcCccCC--ccccC-----CCceEECCCCCC-----cccHHHHHHHHHc--CCcCcCCCCEe
Confidence 356799998 22322 22456666 642 4899999999965 56899999875
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.00085 Score=49.14 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=35.7
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+..|.||+. +.+. ......+||. -..|+.|+++|++.+ .+|.+|.+.+.
T Consensus 22 ~~~~C~IC~~--~~~~-----~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMC--DFES-----RQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTE--ECCB-----TCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCeECCc--ccCC-----CCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 4567999982 2221 2245678874 248999999999874 68999998764
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.16 E-value=0.00081 Score=49.31 Aligned_cols=51 Identities=24% Similarity=0.679 Sum_probs=35.6
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
.+.+|.||+. ..+. ......++|. -..|+.|+++|++.+ .+|.+|.+.+..
T Consensus 14 ~~~~C~IC~~--~~~~-----~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKE--DYAL-----GESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTS--CCCT-----TSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred CCCCCeeCCc--cccC-----CCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 3678999982 2221 1244566764 247999999999754 799999998753
No 11
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.0021 Score=49.75 Aligned_cols=58 Identities=24% Similarity=0.469 Sum_probs=40.2
Q ss_pred CCceeecCCCCceeeecCCCCCCCCCCCCCCcceeecc-cccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 93 SGYVQFISPDGEVFICNTNTDLEMGPCHNQDTLIELGC-SCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 93 sg~~E~~SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC-~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
++.-++.....+|-||+ ..+. .+. -| .|.. ..|..|+.+||+.+++.+|.+|++.+..
T Consensus 6 ~~~~~y~~~i~~C~IC~--~~i~------~g~----~C~~C~h---~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 6 SGRETYPDAVKICNICH--SLLI------QGQ----SCETCGI---RMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CCCCCCSSSSCBCSSSC--CBCS------SSE----ECSSSCC---EECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cchhhccCCCCcCcchh--hHcc------cCC----ccCCCCc---hhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34445545567899998 2221 111 23 4543 5899999999999988999999988763
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.92 E-value=0.0027 Score=47.98 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=26.4
Q ss_pred cceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 124 TLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 124 ~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
..+.++ .|.- ..|++|+++|++.+ .+|.+|.+.+.
T Consensus 41 ~~~~~~-~C~H---~FH~~Ci~~Wl~~~--~~CP~CR~~~~ 75 (81)
T 2ecl_A 41 CVVVWG-ECNH---SFHNCCMSLWVKQN--NRCPLCQQDWV 75 (81)
T ss_dssp CCEEEE-TTSC---EEEHHHHHHHTTTC--CBCTTTCCBCC
T ss_pred eEEEeC-CCCC---ccChHHHHHHHHhC--CCCCCcCCCcc
Confidence 345555 3433 58999999999875 59999998865
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.81 E-value=0.0046 Score=45.26 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=35.4
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+-.|-||+ +.- .+++.++|+ -..++.|+++|++ +++.+|.+|++.+.
T Consensus 7 ~~~~C~IC~---~~~-------~~Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISL---ELM-------KDPVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTS---CCC-------SSEEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCS
T ss_pred ccCCCCCcc---ccc-------cCCEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCC
Confidence 356799997 111 245677764 2367999999997 46889999999875
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.58 E-value=0.014 Score=43.95 Aligned_cols=49 Identities=14% Similarity=0.367 Sum_probs=36.8
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeec-ccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELG-CSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lP-C~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+-.|-||+ +.- .+++.++ |+ - ..++.|+++|+..++...|.+|+..+.
T Consensus 12 ~~~~C~IC~---~~~-------~~p~~~~~Cg--H---~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICK---DIM-------TDAVVIPCCG--N---SYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTT---EEC-------SSCEECTTTC--C---EECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCC---hhh-------cCceECCCCC--C---HHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 356799997 211 2456777 53 1 257899999999988899999999974
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.41 E-value=0.004 Score=43.87 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=35.7
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
..+..|-||+. ..+. +.......+.++|. -..|+.|+++|++. +.+|.+|++.+.
T Consensus 13 ~~~~~C~IC~~--~~~~-~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMD--GYSE-IVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCC--CHHH-HTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCc--cccc-cccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34667999982 2211 00001123667774 24799999999987 569999998864
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.40 E-value=0.0078 Score=48.66 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=35.4
Q ss_pred CCCceeeecCCCCCCCC----------CCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMG----------PCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG----------~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+..|-||+. +.+.. ...++...+.++|+ -..|..|+.+||+. +.+|.+|.+.+.
T Consensus 36 ~~d~CaIC~~--~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRN--HIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCS--CTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCCh--hHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 4567999983 22211 01112234455653 25999999999886 678999999865
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.18 E-value=0.02 Score=41.48 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=36.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhc----CCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNH----GSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~K----GnttCEIC~~~a~ 164 (358)
..+..|.||+. .. .+++.++|.= ..|+.|+++|+..+ +...|.+|++.+.
T Consensus 17 ~~~~~C~IC~~--~~--------~~p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLE--LL--------KEPVSADCNH-----SFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCS--CC--------SSCEECTTSC-----CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCCh--hh--------CcceeCCCCC-----HHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34567999971 11 2345677642 37899999999985 4889999999875
No 18
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.013 Score=40.08 Aligned_cols=45 Identities=16% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHh-cCCceeecc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVN-HGSTACEIC 159 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~-KGnttCEIC 159 (358)
..+..|.||+. .. .++..++|.= ..|+.|+++|++. +++..|.+|
T Consensus 13 ~~~~~C~IC~~--~~--------~~p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLE--YL--------KEPVIIECGH-----NFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCC--BC--------SSCCCCSSCC-----CCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCc--cc--------CccEeCCCCC-----ccCHHHHHHHHHhcCCCCCCCCC
Confidence 44677999971 11 1345577642 3799999999884 677889887
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.97 E-value=0.013 Score=42.56 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=36.5
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHh----cCCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVN----HGSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~----KGnttCEIC~~~a~ 164 (358)
..+..|.||+. .. .+++.++|.= ..|+.|+++|++. .+...|.+|+..+.
T Consensus 17 ~~~~~C~IC~~--~~--------~~p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLE--LL--------TQPLSLDCGH-----SFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCS--CC--------SSCBCCSSSC-----CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCc--cc--------CCceeCCCCC-----HHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34667999982 11 1345667642 3689999999998 46889999999876
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.97 E-value=0.0077 Score=43.68 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=34.6
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+..|.||+. .. .+++.++|.= ..|+.|+++|++.+ ..|.+|+..+.
T Consensus 14 ~~~~C~IC~~--~~--------~~~~~~~CgH-----~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQ--TC--------VHPVSLPCKH-----VFCYLCVKGASWLG--KRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSS--BC--------SSEEEETTTE-----EEEHHHHHHCTTCS--SBCSSSCCBCC
T ss_pred CCCCCccCCc--cc--------CCCEEccCCC-----HHHHHHHHHHHHCC--CcCcCcCchhC
Confidence 3567999971 11 2457778642 37999999999764 79999999875
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.82 E-value=0.01 Score=42.31 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.+..|.||+. .. .+++.++|+= ..|+.|+++|++ +++..|.+|+..+.
T Consensus 14 ~~~~C~IC~~--~~--------~~p~~~~CgH-----~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHL--VL--------CSPKQTECGH-----RFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCC--EE--------SSCCCCSSSC-----CCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred cCCCCCCCCh--Hh--------cCeeECCCCC-----HHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 3567999971 11 1344566642 368999999997 56779999999865
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.72 E-value=0.025 Score=41.68 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhc-CCceeecccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNH-GSTACEICGNGAKN 165 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~K-GnttCEIC~~~a~N 165 (358)
..+..|-||+. .... ....+..++|+ -..|+.|+++|++.+ +...|.+|++.+..
T Consensus 13 ~~~~~C~IC~~--~~~~----~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICME--SFTE----EQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCC--BCCT----TSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCc--cccc----cCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 33567999982 2211 01126677773 247999999999986 56899999998753
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=94.72 E-value=0.012 Score=43.25 Aligned_cols=48 Identities=13% Similarity=0.329 Sum_probs=36.0
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeec-ccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELG-CSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lP-C~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|.||+. .. .+++.++ |. -..|+.|+++|++.++...|.+|++.+.
T Consensus 15 ~~~C~IC~~--~~--------~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 15 ELLCLICKD--IM--------TDAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGSCSSSCC--CC--------TTCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCcCCCh--HH--------hCCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 567999971 11 2456777 64 2368899999999988889999999753
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.63 E-value=0.019 Score=45.80 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
+..|.||+ +.- .+++.++|+= ..|+.|+++|+. .+...|.+|+..+..
T Consensus 52 ~~~C~IC~---~~~-------~~p~~~~CgH-----~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQ---ELV-------FRPITTVCQH-----NVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTS---SBC-------SSEEECTTSC-----EEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCC---hHH-------cCcEEeeCCC-----cccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 45799997 211 2456777742 368999999998 456699999999865
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.51 E-value=0.014 Score=41.45 Aligned_cols=50 Identities=20% Similarity=0.505 Sum_probs=35.4
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
.+..|.||+. ..+ +....+||+= ..|+.|+++|++.+ ..|.+|++.+..+
T Consensus 4 ~~~~C~IC~~--~~~-------~~~~~~~C~H-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLE--DPS-------NYSMALPCLH-----AFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCS--CCC-------SCEEETTTTE-----EESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCeeCCc--ccc-------CCcEecCCCC-----eeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 3567999972 111 1236778742 37999999999764 6999999987643
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.40 E-value=0.015 Score=41.77 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=35.8
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHh-cCCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVN-HGSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~-KGnttCEIC~~~a~ 164 (358)
..+..|.||+ +.- .+++.++|+ - ..|+.|+++|++. +++..|.+|++.+.
T Consensus 18 ~~~~~C~IC~---~~~-------~~~~~~~Cg--H---~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICL---DIL-------QKPVTIDCG--H---NFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTC---SBC-------SSEEECTTC--C---EEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCC---ccc-------CCeEEcCCC--C---hhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3467799997 111 245666663 2 3799999999984 46779999999865
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.40 E-value=0.037 Score=42.31 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
+..|.||+. .. .++..+ +|+= ..|+.|+++|++. +..|.+|+..+..
T Consensus 22 ~~~C~IC~~--~~--------~~p~~~~~CgH-----~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFE--YF--------NIAMIIPQCSH-----NYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCS--BC--------SSEEECTTTCC-----EEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCcccCCh--hh--------CCcCEECCCCC-----HhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 567999971 11 134445 6752 3689999999985 4799999998763
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.34 E-value=0.044 Score=40.48 Aligned_cols=46 Identities=24% Similarity=0.511 Sum_probs=34.2
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+-.|.||+ ... .+++.++|.= ..|+.|+.+|++. ...|.+|++.+.
T Consensus 15 ~~~C~IC~--~~~--------~~p~~~~CgH-----~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICR--QAF--------QNPVVTKCRH-----YFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSC--SBC--------CSEEECTTSC-----EEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCcCCC--chh--------cCeeEccCCC-----HhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 55799997 111 2356677742 3589999999975 679999999986
No 29
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=94.16 E-value=0.0089 Score=42.57 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=36.1
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+.+..|-||.. .... +.......+.++|+= ..|+.|+++|++.+ .+|.+|.+.+.
T Consensus 8 ~~~~~C~IC~~--~~~~-~~~~~~~~~~~~CgH-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMD--GYSE-IVQNGRLIVSTECGH-----VFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCC--BHHH-HHTTTCCEEECTTSC-----EEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCcccCh--hhhc-cccccCCeEeCCCCC-----hHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 34667999982 1111 000112336677753 48999999999875 59999999875
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.047 Score=38.39 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhc-CCceeecc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNH-GSTACEIC 159 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~K-GnttCEIC 159 (358)
..+..|.||+ +.- .+++.++|+ - ..|+.|+++|++.+ +...|.+|
T Consensus 18 ~~~~~C~IC~---~~~-------~~p~~~~Cg--H---~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICL---DIL-------QKPVTIDCG--H---NFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTC---SBC-------SSCEECTTS--S---EECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCC---chh-------CCeEEeCCC--C---cchHHHHHHHHHcCCCCCcCcCC
Confidence 3467799997 211 245667763 2 37999999999954 56789887
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=94.14 E-value=0.0097 Score=49.37 Aligned_cols=25 Identities=16% Similarity=0.573 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCceeeccccccc
Q 018282 138 LVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 138 ~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
..|.+|+.+|++. +.+|.+|.+.+.
T Consensus 87 ~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 87 AFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------
T ss_pred eEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 5899999999988 568999998864
No 32
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.05 E-value=0.017 Score=48.14 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|-||+ ... .+++.+ +|+ -..|+.|+++|+.. ++..|.+|+..+.
T Consensus 54 ~~~C~IC~--~~~--------~~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICL--DML--------KNTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTS--SBC--------SSEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCcccC--hHh--------hCcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34699997 111 134544 664 24699999999984 5789999999874
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.88 E-value=0.017 Score=41.39 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=34.9
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
.+..|.||+ +.. .+ ..+||. -..|+.|+++|++ .+.+|.+|++.+..
T Consensus 14 ~~~~C~IC~---~~~-------~~-~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICM---DGR-------AD-LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSC---CSC-------CS-EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCeeCC---cCc-------cC-cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 356799997 111 12 678874 2379999999998 67899999988764
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=93.56 E-value=0.012 Score=40.91 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|-||+. ..+. +.........++|+ -..|++|+++|++. +.+|.+|++.+.
T Consensus 3 ~~~C~IC~~--~~~~-~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMD--GYSE-IVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCC--BHHH-HHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCccCh--hhhC-ccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 567999972 2211 00001223567774 23799999999987 569999998875
No 35
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=0.044 Score=39.70 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
+..|.||+. .. .+++.+ +|.= ..|+.|+++|++. ...|.+|++.+..-
T Consensus 15 ~~~C~IC~~--~~--------~~p~~~~~CgH-----~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKG--YL--------IDATTITECLH-----TFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSS--CC--------SSCEECSSSCC-----EECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred CCCCCCCCh--HH--------HCcCEECCCCC-----HHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 567999971 11 124454 7742 3689999999976 57999999987643
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.66 E-value=0.039 Score=42.47 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhc-CCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNH-GSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~K-GnttCEIC~~~a~ 164 (358)
+..|-||+. .. .++..++|+ -..|+.|+.+|+..+ +...|.+|+..+.
T Consensus 21 ~~~C~IC~~--~~--------~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLE--LI--------KEPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCC--CC--------SSCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccCh--hh--------cCeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 457999971 11 134556764 246899999999974 4568999999875
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=92.45 E-value=0.071 Score=44.77 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
+..|.||+ +.- .+++.++|.= ..++.|+++|+.. +...|.+|...+..-
T Consensus 78 ~~~C~IC~---~~~-------~~pv~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQ---ELV-------YQPVTTECFH-----NVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTS---SBC-------SSEEECTTSC-----EEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCC---hhh-------cCCEEcCCCC-----chhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 45699997 221 2456677752 3689999999985 566899999998743
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=92.35 E-value=0.068 Score=42.39 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=35.3
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
..+-.|.||.. .. .+++.++|+ -..++.|+++|++.++. +|.+|+..+..
T Consensus 16 ~~~~~C~IC~~--~~--------~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLM--AL--------REAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCS--BC--------SSEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCcCCh--hh--------cCeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 33567999971 11 235667763 23789999999997654 89999988753
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=92.25 E-value=0.015 Score=42.17 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=35.9
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHh-----cCCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVN-----HGSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~-----KGnttCEIC~~~a~ 164 (358)
..+..|.||+. .. .+++.++|+ - ..|+.|+++|++. ++...|.+|+..+.
T Consensus 10 ~~~~~C~IC~~--~~--------~~p~~l~Cg--H---~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLE--LL--------TEPLSLDCG--H---SLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTE--EC--------SSCCCCSSS--C---CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCc--cc--------CCeeECCCC--C---HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 44677999972 11 134556764 2 3689999999987 34789999999875
No 40
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=91.34 E-value=0.059 Score=43.96 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=34.8
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
+..|.||+ +.- .++..+||+ -..|+.|+.+|+.. +..|.+|...+...
T Consensus 53 ~~~C~iC~---~~~-------~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICS---EYF-------IEAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTC---SBC-------SSEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCE
T ss_pred cCCCcccC---ccc-------CCceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCC
Confidence 34699997 211 245778874 24799999999865 57899999987543
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=91.31 E-value=0.092 Score=40.70 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=35.1
Q ss_pred CCceeeecCCCCCCCCCCCCCCccee-ecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIE-LGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~-lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|-||+ +.- .+++. ++|+= ..|+.|+.+|++.++ ..|.+|...+.
T Consensus 22 ~~~C~IC~---~~~-------~~p~~~~~CgH-----~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICM---EKL-------RDARLCPHCSK-----LCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTC---SBC-------SSEEECTTTCC-----EEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCccCC---ccc-------cCccccCCCCC-----hhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 56799997 211 23555 77742 378999999999865 79999999874
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=90.34 E-value=0.18 Score=39.17 Aligned_cols=49 Identities=14% Similarity=0.368 Sum_probs=35.2
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
..+..|.||+ +.- .+++.+ +|+= ..|+.|+.+|+..+ ..|.+|+..+..
T Consensus 13 ~~~~~C~IC~---~~~-------~~p~~~~~CgH-----~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCG---GYF-------IDATTIIECLH-----SFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTS---SBC-------SSEEEETTTCC-----EEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCC---hHH-------hCcCEeCCCCC-----hhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 3356799997 211 234555 7752 35899999999864 899999999864
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=90.19 E-value=0.31 Score=38.42 Aligned_cols=68 Identities=10% Similarity=-0.026 Sum_probs=43.1
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccccchhhHHHHHHHHHH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVSDFKKVLIALKDF 181 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~~dfnkVm~slk~~ 181 (358)
+-.|-||+ ++- .+++.++|+ | --.-|.|+++|+.. +.+|.+|++.+..-....-+.+-..+++|
T Consensus 22 ~~~CpI~~---~~m-------~dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 22 EFLDPIMS---TLM-------CDPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp TTBCTTTC---SBC-------SSEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred hcCCcCcc---ccc-------cCCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 56799997 221 356788876 1 12448999999985 56999999987632222213344556666
Q ss_pred HHHH
Q 018282 182 EALR 185 (358)
Q Consensus 182 ~alR 185 (358)
.+.+
T Consensus 86 ~~~~ 89 (98)
T 1wgm_A 86 LAER 89 (98)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 5443
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.16 E-value=0.1 Score=36.89 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=33.9
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|-||+. +.-..+. ...+.++|+= ..|+.|+++|+.. +...|.+|+..+.
T Consensus 3 ~~~C~IC~~--~~~~~~~---~~~~~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKT--TKYRNPS---LKLMVNVCGH-----TLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTT--HHHHCSS---CCEEECTTCC-----CEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCcCCcCCC--CccCCCc---cCeecCCCCC-----HhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 567999971 0111111 1124567753 3689999999874 5788999999875
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=90.04 E-value=0.13 Score=39.21 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=38.7
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
..+..|-||++. + ...+....||.|.- ..++.|+.++... ++..|.+|.+.+..
T Consensus 9 ~~~~~CpICle~--~------~~~d~~~~p~~CGH---~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEP--L------EIDDINFFPCTCGY---QICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCB--C------CTTTTTCCSSTTSC---CCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCcc--C------ccccccccccCCCC---CcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 346679999821 1 11244567888855 3789999998754 67899999999864
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.67 E-value=0.5 Score=40.89 Aligned_cols=47 Identities=6% Similarity=-0.223 Sum_probs=34.0
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+-.|-||+ ++- .+++.+||+- -.-+.|+++|+...+.+ |.+|++.+.
T Consensus 208 ~~~c~i~~---~~~-------~dPv~~~~gh-----~f~~~~i~~~~~~~~~~-cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISF---ELM-------REPCITPSGI-----TYDRKDIEEHLQRVGHF-NPVTRSPLT 254 (281)
T ss_dssp TTBCTTTC---SBC-------SSEEECSSCC-----EEETTHHHHHHHHTCSS-CTTTCCCCC
T ss_pred ccCCcCcC---CHh-------cCCeECCCCC-----EECHHHHHHHHHHCCCC-CcCCCCCCc
Confidence 55699997 221 3578888741 23378999999876544 999999885
No 47
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=88.57 E-value=0.1 Score=47.49 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=36.7
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeeccc-ccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCS-CRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~-CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
-.+|-||+ ++-. . -.-|. |. ...|..|+.+|++.+++..|..|+....+-
T Consensus 180 i~~C~iC~---~iv~-----~----g~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICH---SLLI-----Q----GQSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTC---SBCS-----S----CEECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchh---hHHh-----C----CcccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45699998 2211 1 12353 65 378999999999999999999999987654
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=88.07 E-value=0.1 Score=40.82 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+-.|-||+ ... .+++.++|+= ..++.|+++|+.. ++..|.+|++.+.
T Consensus 15 ~~~C~iC~--~~~--------~~p~~~~CgH-----~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICM--EIL--------VEPVTLPCNH-----TLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTC--SBC--------SSCEECTTSC-----EECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCccCC--ccc--------CceeEcCCCC-----HHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 45699997 111 2457777753 3789999999964 5689999999975
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=87.96 E-value=0.33 Score=37.99 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
+..|.||+ +.- .+++.++|+= ..|+.|+++|++.. +..|.+|+..+..
T Consensus 23 ~~~C~IC~---~~~-------~~p~~~~CgH-----~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICE---HIL-------ADPVETSCKH-----LFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTC---SBC-------SSEEECTTSC-----EEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCC---cHh-------cCcEEcCCCC-----cccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 56799997 211 2456677642 36899999999874 5689999998753
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.72 E-value=0.19 Score=39.78 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=43.0
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhcCCceeeccccccccccchhhHHHHHH-H
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVSDFKKVLIA-L 178 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~~dfnkVm~s-l 178 (358)
.+-.|.||+ +.- .+++.+ +|+ -..++.|+.+|+. ..|.+|+..+.. .....|..+.. +
T Consensus 21 ~~~~C~IC~---~~~-------~~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~-~~~~~n~~l~~l~ 80 (117)
T 1jm7_B 21 KLLRCSRCT---NIL-------REPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI-QDLKINRQLDSMI 80 (117)
T ss_dssp HTTSCSSSC---SCC-------SSCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC-SSCCCCHHHHHHH
T ss_pred hCCCCCCCC---hHh-------hCccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc-ccccccHHHHHHH
Confidence 367799997 211 234566 774 2356889999987 789999999842 21222443333 3
Q ss_pred HHHHHHHHhhhcC
Q 018282 179 KDFEALRERTATG 191 (358)
Q Consensus 179 k~~~alRE~ta~G 191 (358)
..++.++......
T Consensus 81 ~~~~~~~~~~~~~ 93 (117)
T 1jm7_B 81 QLCSKLRNLLHDN 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhc
Confidence 4556665544443
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=87.03 E-value=0.12 Score=40.03 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=36.3
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
+.+..|-||+. +.+. +.........++|+= ..|+.|+++|++.+ .+|.+|++.+..
T Consensus 5 ~~~~~C~IC~~--~~~~-~~~~~~~~~~~~CgH-----~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMD--GYSE-IVQNGRLIVSTECGH-----VFCSQCLRDSLKNA--NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCC--BHHH-HHHTTCCEEEETTCC-----EEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred CCCCCCcccCh--hhhC-ccccccCeEecCCCC-----hhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence 34667999972 2211 000012236777752 47999999999764 599999998863
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=86.90 E-value=0.43 Score=37.73 Aligned_cols=65 Identities=6% Similarity=0.052 Sum_probs=41.4
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccccchhhHHHHHHHHHH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVSDFKKVLIALKDF 181 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~~dfnkVm~slk~~ 181 (358)
+-.|-||+ ++- .+++.++|+- ..-+.|+++|+. ++.+|.+|++.+..-....-..+-..+++|
T Consensus 29 ~~~CpI~~---~~m-------~dPV~~~cGh-----tf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 29 EFRDPLMD---TLM-------TDPVRLPSGT-----IMDRSIILRHLL--NSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp TTBCTTTC---SBC-------SSEEEETTTE-----EEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred hhCCcCcc---Ccc-------cCCeECCCCC-----EEchHHHHHHHH--cCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 56699997 221 3578888741 255999999997 468999999987632211112333445555
Q ss_pred HH
Q 018282 182 EA 183 (358)
Q Consensus 182 ~a 183 (358)
.+
T Consensus 92 ~~ 93 (100)
T 2kre_A 92 MR 93 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=86.75 E-value=0.1 Score=40.51 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
..+..|-||+. ..+.... ........+|+ -..|..|+++|++.+ .+|.+|...+.
T Consensus 70 ~~~~~C~iC~~--~~~~~~~-~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMD--GYSEIVQ-NGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCC--BHHHHHH-TTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCCCC--ccccccc-cCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCC
Confidence 34567999972 2211000 01123556664 358999999999864 69999998875
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=86.70 E-value=0.27 Score=48.28 Aligned_cols=51 Identities=16% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIR 167 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~ 167 (358)
.+..|.||. +. ..++..+||+-. .|..|+.+|+.. +...|.+|...+....
T Consensus 331 ~~~~C~ICl---e~-------~~~pv~lpCGH~-----FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICA---EN-------DKDVKIEPCGHL-----MCTSCLTSWQES-EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTS---SS-------BCCEEEETTCCE-----ECHHHHHHHHHH-TCSBCTTTCCBCCEEE
T ss_pred CCCCCCccC---cC-------CCCeEEeCCCCh-----hhHHHHHHHHhc-CCCCCCCCCCccCCce
Confidence 346899997 21 134677888643 389999999985 5679999999886543
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=85.84 E-value=0.61 Score=41.22 Aligned_cols=66 Identities=8% Similarity=-0.153 Sum_probs=41.8
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccccchhhHHHHHHHHHH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVSDFKKVLIALKDF 181 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~~dfnkVm~slk~~ 181 (358)
+-.|-||+ ++ + .+++.+||+- -.=+.|+++|+...|. +|.+|+..+..-....-..+-..+.+|
T Consensus 106 ~f~CPI~~---el-m------~DPV~~~~Gh-----tfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 106 YLCGKISF---EL-M------REPCITPSGI-----TYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp GGBCTTTC---SB-C------SSEEECTTSC-----EEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hhcccCcc---cc-C------CCCeECCCCC-----EECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 45699997 22 1 2578888741 2448999999998665 799999987532222212344445566
Q ss_pred HH
Q 018282 182 EA 183 (358)
Q Consensus 182 ~a 183 (358)
..
T Consensus 170 ~~ 171 (179)
T 2f42_A 170 IQ 171 (179)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=84.04 E-value=1.6 Score=33.21 Aligned_cols=67 Identities=7% Similarity=0.050 Sum_probs=43.0
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccccchhhHHHHHHHHHH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNIRVSDFKKVLIALKDF 181 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV~~~dfnkVm~slk~~ 181 (358)
+-.|-||+ ++- .+++.++|+- ..-+.|+++|+.. +.+|.+|++.+..-....-..+-..+++|
T Consensus 14 ~~~CpI~~---~~m-------~dPV~~~cGh-----tf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 14 EFRDPLMD---TLM-------TDPVRLPSGT-----VMDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp TTBCTTTC---SBC-------SSEEECTTSC-----EEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred heECcccC---chh-------cCCeECCCCC-----EECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 56799997 221 3578888631 2458999999985 57999999987532222212344556666
Q ss_pred HHHH
Q 018282 182 EALR 185 (358)
Q Consensus 182 ~alR 185 (358)
.+.+
T Consensus 77 ~~~~ 80 (85)
T 2kr4_A 77 MREK 80 (85)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=84.03 E-value=0.36 Score=47.83 Aligned_cols=53 Identities=19% Similarity=0.413 Sum_probs=36.5
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeeccc---ccChhhhhHHHHHHHHHHhcCC---------ceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCS---CRGDLALVHYGCALKWFVNHGS---------TACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~---CKGSL~~vHr~ClekWf~~KGn---------ttCEIC~~~a~ 164 (358)
..+|-||... . . +.+..-...|. |+- ..|..|+.+||+..++ ..|..|++...
T Consensus 308 ~~ECaICys~--~-l----~~g~lPdk~C~n~~C~h---~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAY--R-L----DGGEVPLVSCDNAKCVL---KCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCS--S-C----TTCCCCCBCCSCTTCCC---CBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCccccee--e-c----CCCCCccccccCCccCC---ccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 5679999721 1 1 11333445574 665 7899999999997654 58999998754
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=83.76 E-value=0.29 Score=35.49 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=32.8
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceee--cccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIEL--GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~l--PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
.+.+|-||+ |.+ .+.+.+ ||+=. ..=++|+++|.+. +..|.+|.+.+..+
T Consensus 7 ~~~~C~IC~---~~~-------~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQ---GRP-------KNGCIVHGKTGHL----MACFTCAKKLKKR--NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTS---SSC-------SCEEEEETTEEEE----EECHHHHHHHHHT--TCCCTTTCCCCCEE
T ss_pred CcCCCCcCC---CCC-------CCEEEECCCCCCh----hhHHHHHHHHHHc--CCcCCCcCcchhce
Confidence 356799997 221 233444 88511 1236899999964 56899999987643
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=82.47 E-value=0.64 Score=38.65 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKN 165 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~N 165 (358)
.+-.|-||. +.- .+++.++|+ - ...+.|+++|++.++ .+|.+|+..+..
T Consensus 17 ~~~~C~IC~---~~~-------~~pv~~~Cg--H---~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICL---MAL-------REAVQTPCG--H---RFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTC---SBC-------SSEEECTTS--C---EEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCC---hhh-------cCcEECCCC--C---HHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 356799997 211 245666653 2 367899999998754 499999988764
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.66 E-value=1.5 Score=33.28 Aligned_cols=71 Identities=11% Similarity=0.369 Sum_probs=41.3
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhc---C---Cceeec--cccccccccchhhH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNH---G---STACEI--CGNGAKNIRVSDFK 172 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~K---G---nttCEI--C~~~a~NV~~~dfn 172 (358)
+-.|-||.. +.. ..+.+.+ +|+- ..-+.|+.+++..+ | ...|.. |+..+. ++..++.
T Consensus 5 ~~~C~IC~~--~~~------~~~~~~l~~CgH-----~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~-~~~~~i~ 70 (94)
T 1wim_A 5 SSGCKLCLG--EYP------VEQMTTIAQCQC-----IFCTLCLKQYVELLIKEGLETAISCPDAACPKQGH-LQENEIE 70 (94)
T ss_dssp BCCCSSSCC--CCB------GGGEEEETTTTE-----EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCE-ECHHHHH
T ss_pred CcCCcccCc--ccc------cccceEcCCCCC-----cccHHHHHHHHHHHhhcCCcccccCccccCCCCCc-cCHHHHH
Confidence 457999972 111 1233333 6864 35689999999864 3 469999 998743 5555544
Q ss_pred HHHHHHHHHHHHHHh
Q 018282 173 KVLIALKDFEALRER 187 (358)
Q Consensus 173 kVm~slk~~~alRE~ 187 (358)
+++.. +.+++++++
T Consensus 71 ~ll~~-~~~~ky~~~ 84 (94)
T 1wim_A 71 CMVAA-EIMQRYKKL 84 (94)
T ss_dssp HHSCH-HHHHHHHHH
T ss_pred HHCCH-HHHHHHHHH
Confidence 44321 334444443
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=75.41 E-value=2.8 Score=39.67 Aligned_cols=69 Identities=7% Similarity=0.122 Sum_probs=42.0
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceee-cccccChhhhhHHHHHHHHHHhcCCceeec--cccccc--cccchhhHHHHH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIEL-GCSCRGDLALVHYGCALKWFVNHGSTACEI--CGNGAK--NIRVSDFKKVLI 176 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~l-PC~CKGSL~~vHr~ClekWf~~KGnttCEI--C~~~a~--NV~~~dfnkVm~ 176 (358)
+-.|-||. +.- .+++.+ .|+ - -.=+.|+++|+...+...|.+ |.+.+. .+.+ |..|+
T Consensus 181 el~CPIcl---~~f-------~DPVts~~CG--H---sFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p---N~~L~ 242 (267)
T 3htk_C 181 ELTCPITC---KPY-------EAPLISRKCN--H---VFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR---DPIME 242 (267)
T ss_dssp CSBCTTTS---SBC-------SSEEEESSSC--C---EEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE---CHHHH
T ss_pred eeECcCcc---Ccc-------cCCeeeCCCC--C---cccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc---CHHHH
Confidence 55699997 111 234543 554 1 234789999999888899999 999764 2322 55554
Q ss_pred HHHHHHHHHHhh
Q 018282 177 ALKDFEALRERT 188 (358)
Q Consensus 177 slk~~~alRE~t 188 (358)
.+.+=-+.|+++
T Consensus 243 ~lve~~k~r~~~ 254 (267)
T 3htk_C 243 LRCKIAKMKESQ 254 (267)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444333444433
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=74.00 E-value=0.71 Score=38.40 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=32.8
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeecccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGA 163 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a 163 (358)
.+-.|-||+ +.- .+++.++|+ - ..++.|+++|++ ++...|.+|....
T Consensus 30 ~~~~C~IC~---~~~-------~~pv~~~Cg--H---~FC~~Ci~~~~~-~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACR---NVL-------RRPFQAQCG--H---RYCSFCLASILS-SGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTC---SBC-------SSEEECTTS--C---EEEHHHHHHHGG-GSCEECHHHHHTT
T ss_pred cCcCCCCCC---hhh-------cCcEECCCC--C---ccCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 356799997 211 245666664 2 367899999996 4567999999864
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.33 E-value=2 Score=33.02 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeec-ccccChhhhhHHHHHHHHHHhc----CCceeec--cccc-c--ccccchhh
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELG-CSCRGDLALVHYGCALKWFVNH----GSTACEI--CGNG-A--KNIRVSDF 171 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lP-C~CKGSL~~vHr~ClekWf~~K----GnttCEI--C~~~-a--~NV~~~df 171 (358)
+-.|-||+ ++ + .+++.++ |+= ..-+.|+++|+... +..+|.+ |... + ..+.+.
T Consensus 7 ~~~CPI~~---~~-~------~dPV~~~~cGh-----~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn-- 69 (94)
T 2yu4_A 7 GFTCPITK---EE-M------KKPVKNKVCGH-----TYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD-- 69 (94)
T ss_dssp CCBCTTTC---SB-C------SSEEEESSSCC-----EEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC--
T ss_pred EeECcCcC---ch-h------cCCEEcCCCCC-----eecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC--
Confidence 45699997 22 1 2567775 742 24489999999875 4679999 8855 3 334332
Q ss_pred HHHHHHHHHHHHHHHh
Q 018282 172 KKVLIALKDFEALRER 187 (358)
Q Consensus 172 nkVm~slk~~~alRE~ 187 (358)
..+...+++|.+.+++
T Consensus 70 ~~L~~~I~~~~~~~~r 85 (94)
T 2yu4_A 70 EALRRAIENHNKKRHR 85 (94)
T ss_dssp HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 2344556777654443
No 64
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=61.78 E-value=3.7 Score=28.30 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhhccc
Q 018282 336 ILFVFWFLVFGIWASR 351 (358)
Q Consensus 336 ilfv~wflvfgiwasr 351 (358)
++.++||.||++.-+|
T Consensus 18 ~I~i~W~~vf~lFl~R 33 (34)
T 3s8f_C 18 TILVFWLGVYAVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHeeeecC
Confidence 4668999999999887
No 65
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=59.63 E-value=1.4 Score=32.30 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
+..|.||+ +. ..+.+.+||+=. ...+.|+.+| ..|.+|.+.+...
T Consensus 24 ~~~C~iC~---~~-------~~~~~~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICM---DR-------NIAIVFVPCGHL----VTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTS---SS-------BCCEEEETTCCB----CCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCCCC---CC-------CCCEEEcCCCCh----hHHHHhhhcC------ccCCCcCcCccCc
Confidence 56799997 22 135677888422 2688999999 7999999988654
No 66
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=52.24 E-value=6.2 Score=25.51 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhhhh
Q 018282 207 DAVAAIRRQRLSEISL 222 (358)
Q Consensus 207 ~~~aairrqrlsei~~ 222 (358)
+-+.+||++||+|+..
T Consensus 5 ~ELeair~~rl~~lq~ 20 (27)
T 1yyb_A 5 EELEALRRQRLAELQA 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3589999999999854
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=46.82 E-value=9.7 Score=27.56 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhcCCceeeccccccc
Q 018282 139 VHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 139 vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
.=|+|+++|++..+ +|.++++...
T Consensus 26 yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 26 FEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp EEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 55899999999754 4999998864
No 68
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.62 E-value=6.9 Score=31.34 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=30.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHH----h-cC------Cceeeccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFV----N-HG------STACEICGNG 162 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~----~-KG------nttCEIC~~~ 162 (358)
.|...|.+|+ .+.+.......++ |.. |. +=-...|..||..+.. + ++ -++|.+|+..
T Consensus 3 ~p~~~C~~C~--~~~~~~~~g~~~~-Ll~-C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~ 70 (112)
T 3v43_A 3 EPIPICSFCL--GTKEQNREKKPEE-LIS-CA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQ 70 (112)
T ss_dssp CCCSSBTTTC--CCTTCCTTSCCCC-CEE-CT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCC
T ss_pred ccCccccccC--CchhhCcCCCchh-ceE-hh--hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCc
Confidence 5778899998 2222222212233 433 33 3335789999953321 1 22 2378888864
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.86 E-value=37 Score=24.66 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=30.2
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
.+..|.||+ +.+ .+.+.+||+=.. +-..|+++ ...|.+|.+.+..+
T Consensus 14 ~~~~C~IC~---~~~-------~~~v~~pCgH~~----~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQ---NGT-------VNWVLLPCRHTC----LCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSS---SSC-------CCCEETTTTBCC----SCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCcC---cCC-------CCEEEECCCChh----hhHHHHhc------CCCCCCCCcchhce
Confidence 367799997 222 356778985221 23457763 47999999988654
No 70
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.74 E-value=18 Score=26.21 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
+..|.||+ +.. .+++.+||+=. ...+.|+++ ...|.+|...+...
T Consensus 25 ~~~C~IC~---~~~-------~~~~~~pCgH~----~~C~~C~~~------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICM---DRN-------IAIVFVPCGHL----VTCKQCAEA------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSC---SSC-------CCBCCSSSCCC----CBCHHHHHH------CSBCTTTCCBCCCC
T ss_pred CCCCCcCC---CCC-------CCEEEecCCCH----HHHHHHhhC------CCCCccCCceecCc
Confidence 45799997 221 24567888421 146788854 37999999988653
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=28.88 E-value=6.4 Score=37.61 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
.+..|.||+ +.. .+++.+||+=.. ..+.|+.+| ..|.+|...+...
T Consensus 294 ~~~~C~IC~---~~~-------~~~v~lpCgH~~----fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCM---DKE-------VSVVFIPCGHLV----VCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTS---SSB-------CCEEEETTCCEE----ECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccC---CcC-------CceEEcCCCChh----HhHHHHhcC------CcCCCCCCCccCe
Confidence 467899997 222 356778885431 456788888 7999999987643
No 72
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.42 E-value=30 Score=29.67 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHH---------hcCCceeeccccccccccchhhH
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFV---------NHGSTACEICGNGAKNIRVSDFK 172 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~---------~KGnttCEIC~~~a~NV~~~dfn 172 (358)
+..|+||. +.+++| -| ..=-...|..|+.+=+. ..+.=.|-.|...-..--.....
T Consensus 63 ~d~C~vC~-----------~GG~Ll--cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~ 127 (142)
T 2lbm_A 63 DEQCRWCA-----------EGGNLI--CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACN 127 (142)
T ss_dssp BCSCSSSC-----------CCSSEE--EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHH
T ss_pred CCeecccC-----------CCCcEE--eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHH
Confidence 56799996 123433 23 23335689999987652 36788999998543222223346
Q ss_pred HHHHHHHHHH
Q 018282 173 KVLIALKDFE 182 (358)
Q Consensus 173 kVm~slk~~~ 182 (358)
+||..++.|.
T Consensus 128 ~~~~~~~~~~ 137 (142)
T 2lbm_A 128 SVFENLEQLL 137 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6766666553
No 73
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=26.02 E-value=36 Score=24.17 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=32.7
Q ss_pred CCCceeeecCCCCCCCCCCCCCCcceee--cccccChhhhhHHHHHHHHHHhcCCceeeccccccccc
Q 018282 101 PDGEVFICNTNTDLEMGPCHNQDTLIEL--GCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAKNI 166 (358)
Q Consensus 101 pE~eCRICh~~~DlEsG~~~~~g~lL~l--PC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~NV 166 (358)
.+..|.||+ |.+ .+...+ ||+=. .+=++|+.+|.+. +..|.+|.+.+..+
T Consensus 6 ~~~~C~IC~---~~~-------~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCE---KRP-------RDGNIIHGRTGHL----VTCFHCARRLKKA--GASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTS---SSB-------SCEEEEETTEEEE----EECHHHHHHHHHT--TCBCTTTCCBCCEE
T ss_pred cCCCCcccC---CcC-------CCeEEEecCCCCH----hHHHHHHHHHHHh--CCcCCCcCchhhce
Confidence 357899997 221 123334 87411 1357899999865 47999999987643
No 74
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.22 E-value=7.6 Score=26.90 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHhcCCceeeccccccc
Q 018282 102 DGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVNHGSTACEICGNGAK 164 (358)
Q Consensus 102 E~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~KGnttCEIC~~~a~ 164 (358)
+..|.||+ +.- .++..++|+= ..++.|+.+ ....|.+|++.+.
T Consensus 6 ~~~C~IC~---~~~-------~~p~~l~CgH-----~fC~~Ci~~-----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 6 FLRCQQCQ---AEA-------KCPKLLPCLH-----TLCSGCLEA-----SGMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSC---SSC-------BCCSCSTTSC-----CSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred CCCceEeC---Ccc-------CCeEEcCCCC-----cccHHHHcc-----CCCCCCcCCcEee
Confidence 45699997 211 2356778752 245677766 3678999998865
No 75
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=24.30 E-value=34 Score=26.02 Aligned_cols=30 Identities=27% Similarity=0.674 Sum_probs=23.4
Q ss_pred cCCceeeccccccccccchhhHHHHHHHHHHHHHHHhhhcCC
Q 018282 151 HGSTACEICGNGAKNIRVSDFKKVLIALKDFEALRERTATGE 192 (358)
Q Consensus 151 KGnttCEIC~~~a~NV~~~dfnkVm~slk~~~alRE~ta~G~ 192 (358)
+|+..||||+++-... |+.++++..--+|.
T Consensus 1 ~GsmvC~~C~~ECET~------------kEl~~H~~sCp~gq 30 (57)
T 2k9h_A 1 MGSMVCDVCHHECETA------------KELESHRQSCINGQ 30 (57)
T ss_dssp CCTTBCTTTCCBCSST------------TTHHHHHHHHTTTB
T ss_pred CCcchhhHHHhhhhhH------------HHHHHHhccCCCCC
Confidence 5899999999986533 56778888877776
No 76
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=23.81 E-value=31 Score=29.29 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhhhhh
Q 018282 207 DAVAAIRRQRLSEISLW 223 (358)
Q Consensus 207 ~~~aairrqrlsei~~w 223 (358)
+-+.+||++||.||..=
T Consensus 3 ~ELeaIR~~Rl~ELq~q 19 (127)
T 2jxn_A 3 PELQCIRECRLAQLKNN 19 (127)
T ss_dssp HHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36899999999999753
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=22.65 E-value=14 Score=27.69 Aligned_cols=49 Identities=18% Similarity=0.458 Sum_probs=32.4
Q ss_pred CCCCceeeecCCCCCCCCCCCCCCcceeecccccChhhhhHHHHHHHHHHh--cCCceeecccccc
Q 018282 100 SPDGEVFICNTNTDLEMGPCHNQDTLIELGCSCRGDLALVHYGCALKWFVN--HGSTACEICGNGA 163 (358)
Q Consensus 100 SpE~eCRICh~~~DlEsG~~~~~g~lL~lPC~CKGSL~~vHr~ClekWf~~--KGnttCEIC~~~a 163 (358)
.++..|.||+ + .+++| -|. +=-+..|..|+...+.. +|.=.|..|....
T Consensus 10 ~~~~~C~vC~---~--------~~~ll--~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCG---D--------GTDVL--RCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTS---C--------CTTCE--ECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCC---C--------CCeEE--ECC--CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4567799997 1 12322 344 22268999999777664 5677999997654
No 78
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.91 E-value=29 Score=18.57 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=9.7
Q ss_pred eeeccccccccc
Q 018282 155 ACEICGNGAKNI 166 (358)
Q Consensus 155 tCEIC~~~a~NV 166 (358)
.|++|+..|...
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T 1znf_A 3 KCGLCERSFVEK 14 (27)
T ss_dssp BCSSSCCBCSSH
T ss_pred cCCCCCCcCCCH
Confidence 699999998753
Done!