BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018283
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/347 (81%), Positives = 302/347 (87%), Gaps = 34/347 (9%)
Query: 46 HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKEL 105
HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE
Sbjct: 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 106 AQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQD------ 159
AQNETDS K+++SSE+ IGEKLSEIGGRLDYPRLTK++AE IETLW DPAIQ+
Sbjct: 68 AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGN 127
Query: 160 ----------------------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRL 191
DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRL
Sbjct: 128 ELQVPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 192 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251
FDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 311
FEKTSFMLFLNKFDIFEKKVL VPLNVCEWF+DYQPVS+GKQEIE+AYEFVKKKFEELY+
Sbjct: 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307
Query: 312 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
Q+TAPDRVDRVFKIYRTTALD KLVKKTFKLVDETLRRR+L EAGLL
Sbjct: 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 192/372 (51%), Gaps = 58/372 (15%)
Query: 21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
A S E + E+E++++++ + + KLLLLGAGESGKSTI KQ+K++ Q + E
Sbjct: 9 AGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEEC 68
Query: 81 KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
+I++I+ N Q+I + L DS + ++ KL + ++ +
Sbjct: 69 LEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSAR-------QDDARKLMHMADTIEEGTM 121
Query: 141 TKELAEDIETLWADPAIQ----------------------------------DDVLYARV 166
KE+++ I+ LW D IQ DVL +RV
Sbjct: 122 PKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRV 181
Query: 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 226
+TTG++E QFS + +R+FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 182 KTTGIIETQFSFKDLN------FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 235
Query: 227 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ 286
L EDE+ NRM E+ LF+ + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 236 LAEDEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------Y 289
Query: 287 PVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346
P G E A ++K +F EL + V ++ + T A D + VK F V +
Sbjct: 290 PEYAGSNTYEEAGNYIKVQFLELNMRRD----VKEIYS-HMTCATDTQNVKFVFDAVTDI 344
Query: 347 LRRRHLFEAGLL 358
+ + +L + GL
Sbjct: 345 IIKENLKDCGLF 356
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 184/360 (51%), Gaps = 58/360 (16%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 19 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 78
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + DS + + +L + G + +T ELA I+ LW
Sbjct: 79 QSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 131
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 132 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 191
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 192 KDLH------FKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 245
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + CF TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 246 SMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 299
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+++ +FE+L + + + T A D K V+ F V + + + +L + GL
Sbjct: 300 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 188/373 (50%), Gaps = 58/373 (15%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
A S E + E+E++++++ + + KLLLLGAGESGKSTI KQ K++ Q G+ E
Sbjct: 2 GAGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQXKIIHQDGYSLEE 61
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+I++I+ N Q+I + L DS + ++ KL ++
Sbjct: 62 CLEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSAR-------QDDARKLXHXADTIEEGT 114
Query: 140 LTKELAEDIETLWADPAIQ----------------------------------DDVLYAR 165
KE ++ I+ LW D IQ DVL +R
Sbjct: 115 XPKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSR 174
Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
V+TTG++E QFS + +R FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 175 VKTTGIIETQFSFKDLN------FRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 228
Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
L EDE+ NR E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 229 VLAEDEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 282
Query: 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345
P G E A ++K +F EL + V ++ + T A D + VK F V +
Sbjct: 283 YPEYAGSNTYEEAGNYIKVQFLELNXRRD----VKEIYS-HXTCATDTQNVKFVFDAVTD 337
Query: 346 TLRRRHLFEAGLL 358
+ + +L + GL
Sbjct: 338 IIIKENLKDCGLF 350
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 186/362 (51%), Gaps = 62/362 (17%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 25 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 84
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + D+ + + +L + G + +T ELA I+ LW
Sbjct: 85 QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 137
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 138 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 197
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 198 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 251
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 252 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 305
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAG 356
+++ +FE+L ++ +IY T A D K V+ F V + + + +L + G
Sbjct: 306 AAYIQCQFEDL-------NKRKDTKEIYTHFTCATDAKNVQFVFDAVTDVIIKNNLKDCG 358
Query: 357 LL 358
L
Sbjct: 359 LF 360
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 179/344 (52%), Gaps = 58/344 (16%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ Q G+ E +I++I+ N Q+I + L
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + ++ KL + ++ + KE+++ I+ LW D IQ
Sbjct: 66 YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 118
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL +RV+TTG++E QFS + +R+FDV
Sbjct: 119 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 172
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A ++K +F EL +
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAGNYIKVQFLELNMRRD 286
Query: 315 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
V ++ + T A D + VK F V + + + +L + GL
Sbjct: 287 ----VKEIYS-HMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 325
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 184/360 (51%), Gaps = 58/360 (16%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 18 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + D+ + + +L + G + +T ELA I+ LW
Sbjct: 78 QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+++ +FE+L + + + T A D K V+ F V + + + +L + GL
Sbjct: 299 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 191/375 (50%), Gaps = 62/375 (16%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 8 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 67
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 68 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 120
Query: 140 LTKELAEDIETLWADPAIQ----------------------------------DDVLYAR 165
+T ELA I+ LW D +Q DVL R
Sbjct: 121 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 180
Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 181 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 235 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 288
Query: 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLV 343
P G E A +++ +FE+L ++ +IY T A D K V+ F V
Sbjct: 289 YPEYAGSNTYEEAAAYIQCQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAV 341
Query: 344 DETLRRRHLFEAGLL 358
+ + + +L + GL
Sbjct: 342 TDVIIKNNLPDCGLF 356
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 8 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 67
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 68 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 120
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 121 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 174
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 175 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 234
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 235 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 283
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 284 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 327
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 9 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 69 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYL 121
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 235
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 236 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 284
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 285 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 328
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 66 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 281
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 282 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 325
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 10 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 69
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 70 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 122
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 123 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 176
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 177 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 236
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 237 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 285
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 286 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 329
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 65 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 117
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 118 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 171
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 172 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 231
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 232 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 280
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 281 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 324
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 64 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 230
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 279
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 280 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 323
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 184/357 (51%), Gaps = 63/357 (17%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I
Sbjct: 1 EDGEKAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + DS + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGV 112
Query: 158 Q----------------------------------DDVLYARVRTTGVVEIQFSPVGEHK 183
Q DVL RV+TTG+VE F+ H
Sbjct: 113 QACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH- 171
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303
D + F TS +LFLNK D+FE+K+ K PL +C P G E A +++
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQ 280
Query: 304 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+FE+L ++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 281 CQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 330
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 183/360 (50%), Gaps = 58/360 (16%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 19 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 78
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + DS + + +L + G + +T ELA I+ LW
Sbjct: 79 QSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 131
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 132 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 191
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 192 KDLH------FKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 245
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 246 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 299
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+++ +FE+L + + + T A D K V+ F V + + + +L + GL
Sbjct: 300 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 182/360 (50%), Gaps = 58/360 (16%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K+ + G+ E E K Y +V+++N
Sbjct: 19 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEECKQYKAVVYSNTI 78
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + D+ + + +L + G + +T ELA I+ LW
Sbjct: 79 QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 131
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 132 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 191
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 192 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 245
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 246 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 299
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+++ +FE+L + + + T A D K V F V + + + +L + GL
Sbjct: 300 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVCFVFDAVTDVIIKNNLKDCGLF 354
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 185/362 (51%), Gaps = 62/362 (17%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 18 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + D+ + + +L + G + +T ELA I+ LW
Sbjct: 78 QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV TTG+VE F+
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVPTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAG 356
+++ +FE+L ++ +IY T A D K V+ F V + + + +L + G
Sbjct: 299 AAYIQCQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCG 351
Query: 357 LL 358
L
Sbjct: 352 LF 353
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 183/360 (50%), Gaps = 58/360 (16%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 18 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + D+ + + +L + G + +T ELA I+ LW
Sbjct: 78 QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDVG QR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+++ +FE+L + + + T A D K V+ F V + + + +L + GL
Sbjct: 299 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 183/360 (50%), Gaps = 58/360 (16%)
Query: 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N
Sbjct: 18 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93 QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
Q+I + L + D+ + + +L + G + +T ELA I+ LW
Sbjct: 78 QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
D +Q DVL RV+TTG+VE F+
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
H +++FDVGG R+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+++ +FE+L + + + T A D K V+ F V + + + +L + GL
Sbjct: 299 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 185/356 (51%), Gaps = 63/356 (17%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I
Sbjct: 1 EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + ++ + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 Q----------------------------------DDVLYARVRTTGVVEIQFSPVGEHK 183
Q DVL RV+TTG+VE F+ +
Sbjct: 113 QACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303
D + F +TS +LFLNK D+FE+K+ + PL +C P TG E A +++
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQ 280
Query: 304 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
+FE+L +R +IY T A D K V+ F V + + + +L E GL
Sbjct: 281 CQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 58/373 (15%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGA ESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQ----------------------------------DDVLYAR 165
+T ELA I+ LW D +Q DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 346 TLRRRHLFEAGLL 358
+ + +L + GL
Sbjct: 341 VIIKNNLKDCGLF 353
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 185/356 (51%), Gaps = 63/356 (17%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I
Sbjct: 1 EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + ++ + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 Q----------------------------------DDVLYARVRTTGVVEIQFSPVGEHK 183
Q DVL RV+TTG+VE F+ +
Sbjct: 113 QACFSRSREYLLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303
D + F +TS +LFLNK D+FE+K+ + PL +C P TG E A +++
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQ 280
Query: 304 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
+FE+L +R +IY T A D K V+ F V + + + +L E GL
Sbjct: 281 CQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 178/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 6 KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 66 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 281
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 282 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 325
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 178/346 (51%), Gaps = 62/346 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 9 KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 69 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 121
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 235
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 236 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 284
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 285 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 328
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 180/345 (52%), Gaps = 62/345 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
++ + + +L + G + +T ELA I+ LW D +Q
Sbjct: 64 FGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQ 116
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ + +++FDV
Sbjct: 117 LNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY------FKMFDV 170
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F +
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTE 230
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+FE+K+ + PL +C P TG E A +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQCQFEDL----- 279
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
+R +IY T A D K V+ F V + + + +L E GL
Sbjct: 280 --NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 322
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 158/295 (53%), Gaps = 53/295 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 3 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 62
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + + +L + G + +T ELA I+ LW D +Q
Sbjct: 63 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 115
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 116 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 169
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 170 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 229
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 230 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL 278
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 158/295 (53%), Gaps = 53/295 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
D+ + + +L + G + +T ELA I+ LW D +Q
Sbjct: 64 FGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL RV+TTG+VE F+ H +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 230
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL 279
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 64/373 (17%)
Query: 20 NAADSEENAQTAEIERRIEQET-KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA 78
+A D ++ I+R + ++ KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSED 63
Query: 79 ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP 138
E K Y V+++N Q+I + L + ++ + + +L + G +
Sbjct: 64 ECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEG 116
Query: 139 RLTKELAEDIETLWADPAIQ----------------------------------DDVLYA 164
+T ELA I+ LW D +Q DVL
Sbjct: 117 VMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRT 176
Query: 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYD 224
RV+TTG+VE F+ + +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 177 RVKTTGIVETHFTFKDLY------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 225 QTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKD 284
L EDE+ NRM E+ +LFD + F +TS +LFLNK D+FE+K+ + PL +C
Sbjct: 231 LVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC----- 285
Query: 285 YQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKL 342
P TG E A +++ +FE+L +R +IY T A D K V+ F
Sbjct: 286 -YPEYTGSNTYEEAAAYIQCQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDA 337
Query: 343 VDETLRRRHLFEA 355
V + + + +L E+
Sbjct: 338 VTDVIIKNNLKES 350
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 178/344 (51%), Gaps = 58/344 (16%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ Q G+ E +I++I+ N Q+I + L
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
DS + ++ KL + ++ + KE+++ I+ LW D IQ
Sbjct: 65 YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 117
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
DVL +RV+TTG++E QFS + +R+FDV
Sbjct: 118 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 171
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
GGQR+ER+KWIH FEGV+ +IF AA+S YD L ED++ NRM E+ LF+ + F
Sbjct: 172 GGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFAT 231
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
TS +LFLNK D+F +K+ K L++C F DY G E+A ++K +F EL +
Sbjct: 232 TSIVLFLNKKDVFSEKIKKAHLSIC--FPDYN----GPNTYEDAGNYIKVQFLELNMRRD 285
Query: 315 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
V ++ + T A D + VK F V + + + +L + GL
Sbjct: 286 ----VKEIYS-HMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 324
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 172/344 (50%), Gaps = 60/344 (17%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + GF ++K Y V+++N Q++ + L
Sbjct: 14 KLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVE 73
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRL-DYPRLTKELAEDIETLWADPAIQD-------- 159
D E K + + ++ R+ D + EL + LW D IQ+
Sbjct: 74 YGDK-------ERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREY 126
Query: 160 --------------------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 193
D+L RV+TTG+VE F+ H +RLFD
Sbjct: 127 QLNDSAKYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLH------FRLFD 180
Query: 194 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253
VGGQR+ER+KWIH FE V+A+IFC A+S YDQ L EDE NRM E+ LFD + F
Sbjct: 181 VGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFI 240
Query: 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS 313
TS +LFLNK D+F +K+ K PL +C F +Y G E+A +++ +FE ++
Sbjct: 241 DTSIILFLNKKDLFGEKIKKSPLTIC--FPEYP----GSNTYEDAAAYIQTQFES---KN 291
Query: 314 TAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
+P ++ + T A D ++ F V + + +L GL
Sbjct: 292 RSP---NKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGCGL 332
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 176/364 (48%), Gaps = 70/364 (19%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA + + KLLLLGAGESGKST KQ++++ FD+ + + I++NV + ++V
Sbjct: 4 EDGEKAAREV-KLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRV 62
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------I 148
L D ++L D+ +N+ G+KL R P + + E I
Sbjct: 63 LVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAI 113
Query: 149 ETLWADPAIQD----------------------------------DVLYARVRTTGVVEI 174
LW D IQ+ D+L AR T G+ E
Sbjct: 114 RALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHET 173
Query: 175 QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 234
F+ H +++FDVGGQR+ER+KW FEGV+A+IFC A+S+YDQ L ED Q N
Sbjct: 174 HFTFKDLH------FKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTN 227
Query: 235 RMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQE 294
RM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G
Sbjct: 228 RMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNT 281
Query: 295 IENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFE 354
E A +++ +FE+L + + + T A D K V+ F V + + + +L +
Sbjct: 282 YEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 336
Query: 355 AGLL 358
GL
Sbjct: 337 CGLF 340
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 49/356 (13%)
Query: 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
EIER++ ++ + + KLLLLG GESGKST KQ++++ +G+ + + + + +++ N+
Sbjct: 18 EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 77
Query: 92 YQTIKVL------------YDGSKELAQ--NETDSMKFVVSSENK---EIGEKLSEIGGR 134
+ ++ + Y+ +K AQ E D K V + EN I ++ G +
Sbjct: 78 FTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQ 136
Query: 135 LDYPRL--------TKELAEDIETLWADPA---IQDDVLYARVRTTGVVEIQFSPVGEHK 183
Y R TK D++ + ADP+ Q DVL RV TTG++E F
Sbjct: 137 ECYDRRREYQLSDSTKYYLNDLDRV-ADPSYLPTQQDVLRVRVPTTGIIEYPFD------ 189
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E + +NRM E+K LF
Sbjct: 190 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 249
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFV 302
++ P F+ +S +LFLNK D+ E+K++ L DY P G Q + + A EF+
Sbjct: 250 RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGPQRDAQAAREFI 303
Query: 303 KKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
K F +L PD D++ + T A D + ++ F V +T+ + +L E L+
Sbjct: 304 LKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 353
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 195/368 (52%), Gaps = 49/368 (13%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + KLLLLG GESGKST KQ++++ +G+ + +
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 65
Query: 80 LKSYISVIHANVYQTIKVL------------YDGSKELAQ--NETDSMKFVVSSENK--- 122
+ + +++ N++ ++ + Y+ +K AQ E D K V + EN
Sbjct: 66 KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK-VSAFENPYVD 124
Query: 123 EIGEKLSEIGGRLDYPRL--------TKELAEDIETLWADPA---IQDDVLYARVRTTGV 171
I ++ G + Y R TK D++ + ADP+ Q DVL RV TTG+
Sbjct: 125 AIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRV-ADPSYLPTQQDVLRVRVPTTGI 183
Query: 172 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 231
+E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E +
Sbjct: 184 IEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 232 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG 291
+NRM E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY P G
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDG 291
Query: 292 KQ-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 350
Q + + A EF+ K F +L PD D++ + T A D + ++ F V +T+ +
Sbjct: 292 PQRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQL 345
Query: 351 HLFEAGLL 358
+L E L+
Sbjct: 346 NLKEYNLV 353
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 195/368 (52%), Gaps = 49/368 (13%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + KLLLLG GESGKST KQ++++ +G+ + +
Sbjct: 8 SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 67
Query: 80 LKSYISVIHANVYQTIKVL------------YDGSKELAQ--NETDSMKFVVSSENK--- 122
+ + +++ N++ ++ + Y+ +K AQ E D K V + EN
Sbjct: 68 KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK-VSAFENPYVD 126
Query: 123 EIGEKLSEIGGRLDYPRL--------TKELAEDIETLWADPA---IQDDVLYARVRTTGV 171
I ++ G + Y R TK D++ + ADP+ Q DVL RV TTG+
Sbjct: 127 AIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRV-ADPSYLPTQQDVLRVRVPTTGI 185
Query: 172 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 231
+E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E +
Sbjct: 186 IEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 232 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG 291
+NRM E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY P G
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDG 293
Query: 292 KQ-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 350
Q + + A EF+ K F +L PD D++ + T A D + ++ F V +T+ +
Sbjct: 294 PQRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQL 347
Query: 351 HLFEAGLL 358
+L E L+
Sbjct: 348 NLKEYNLV 355
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 183/367 (49%), Gaps = 71/367 (19%)
Query: 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
EIER++ ++ + + KLLLLG GESGKST KQ++++ +G+ + + + + +++ N+
Sbjct: 12 EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 71
Query: 92 YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIG----GRLDYPRLTKELAE 146
+ ++ + D++K E NK + + E+ D P
Sbjct: 72 FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA---- 119
Query: 147 DIETLWADPAIQD----------------------------------DVLYARVRTTGVV 172
I++LW DP IQ+ DVL V TTG++
Sbjct: 120 -IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGII 178
Query: 173 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ 232
E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E +
Sbjct: 179 EYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 233 KNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK 292
+NRM E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY P G
Sbjct: 233 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGP 286
Query: 293 Q-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 351
Q + + A EF+ K F +L PD D++ + T A D + ++ F V +T+ + +
Sbjct: 287 QRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 340
Query: 352 LFEAGLL 358
L E L+
Sbjct: 341 LKEYNLV 347
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 182/339 (53%), Gaps = 49/339 (14%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVL---------- 98
KLLLLG GESGKST KQ++++ +G+ + + + + +++ N++ ++ +
Sbjct: 9 KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIP 68
Query: 99 --YDGSKELAQ--NETDSMKFVVSSENK---EIGEKLSEIGGRLDYPRL--------TKE 143
Y+ +K AQ E D K V + EN I ++ G + Y R TK
Sbjct: 69 YKYEHNKAHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKY 127
Query: 144 LAEDIETLWADPA---IQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE 200
D++ + ADP+ Q DVL RV TTG++E F ++R+ DVGGQR+E
Sbjct: 128 YLNDLDRV-ADPSYLPTQQDVLRVRVPTTGIIEYPFD------LQSVIFRMVDVGGQRSE 180
Query: 201 RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 260
RRKWIH FE V++++F A+SEYDQ L E + +NRM E+K LF ++ P F+ +S +LF
Sbjct: 181 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 240
Query: 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFVKKKFEELYFQSTAPDRV 319
LNK D+ E+K++ L DY P G Q + + A EF+ K F +L PD
Sbjct: 241 LNKKDLLEEKIMYSHL------VDYFPEYDGPQRDAQAAREFILKMFVDL-----NPDS- 288
Query: 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
D++ + T A D + ++ F V +T+ + +L E L+
Sbjct: 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 183/375 (48%), Gaps = 69/375 (18%)
Query: 20 NAADSEENAQTAEIERRIEQ--ETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77
+A D ++ I+R + + E +A + + K+LLLGAGESGKST KQ++++ FD+
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRIIHGREFDQ 65
Query: 78 AELKSYISVIHANVYQTIKVLYDGSKEL------AQNETDSMKFVVSSENKEIGEKLSEI 131
L + I N+ + +VL D +L ++NE M F+++ ENK G +
Sbjct: 66 KALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGM-FLMAFENKA-GLPVEPA 123
Query: 132 GGRLDYPRLTKELAEDIETLWADPAIQD-------------------------------- 159
+L P L+ LW D I++
Sbjct: 124 TFQLYVPALS--------ALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPS 175
Query: 160 --DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 217
D+L AR T G+VE F KK +++ DVGGQR++R+KW F+G+++++F
Sbjct: 176 KQDILLARKATKGIVEHDFVI----KKIP--FKMVDVGGQRSQRQKWFQCFDGITSILFM 229
Query: 218 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
+ SEYDQ L ED + NR++E+ +F+ ++ F S +LFLNK D+ +KV V +
Sbjct: 230 VSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKSV--S 287
Query: 278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337
+ + F D++ +E+ ++ + F+ + P +F + TTA+D + ++
Sbjct: 288 IKKHFPDFK---GDPHRLEDVQRYLVQCFDRKRRNRSKP-----LFHHF-TTAIDTENIR 338
Query: 338 KTFKLVDETLRRRHL 352
F V +T+ + +L
Sbjct: 339 FVFHAVKDTILQENL 353
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 176/371 (47%), Gaps = 68/371 (18%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + K+LLLGAGESGKST KQ++++ FD+
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRA 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+ + I++NV + ++VL D ++L D+ +N+ G+KL R P
Sbjct: 66 REEFRPTIYSNVIKGMRVLVDAREKLHIPWGDN-------KNQLHGDKLMAFDTR--APM 116
Query: 140 LTKELAED---------IETLWADPAIQD------------------------------- 159
+ + E I LW D IQ+
Sbjct: 117 AAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIP 176
Query: 160 ---DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 216
D+L AR T G+ E F + +++ DVGGQR+ER++W F+ V++++F
Sbjct: 177 SQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF 230
Query: 217 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPL 276
+ SE+DQ L ED Q NR+ E+ +F+ ++ F S +LFLNK D+ E+KV V
Sbjct: 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV-- 288
Query: 277 NVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336
++ ++F +++ ++++ KF F+ D+ R + TTA++ + +
Sbjct: 289 SIKDYFLEFEGDPHCLRDVQ--------KFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340
Query: 337 KKTFKLVDETL 347
+ F+ V +T+
Sbjct: 341 RLVFRDVKDTI 351
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 179/399 (44%), Gaps = 68/399 (17%)
Query: 9 MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
MG C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI K
Sbjct: 1 MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66 QIKLLFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124
Q+++L GF+ ++E + + I N+ + I+ + L V N E
Sbjct: 59 QMRILHVNGFNGDSEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPEN 110
Query: 125 GEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI------------------------- 157
++ I ++ P E E + LW D +
Sbjct: 111 QFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 170
Query: 158 --QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLF 208
QDD +L RV T+G+ E +F + + +FDVGGQR+ERRKWI F
Sbjct: 171 IKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCF 224
Query: 209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268
V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 225 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Query: 269 KKVLKVPLNVCEWFKDYQPVSTGKQ---------EIENAYEFVKKKFEELYFQSTAPDRV 319
+KVL + ++F ++ +T + + A F++ +F + STA
Sbjct: 285 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDG 341
Query: 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+ T A+D + +++ F + ++R HL + LL
Sbjct: 342 RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 176/399 (44%), Gaps = 68/399 (17%)
Query: 9 MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
MG C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI K
Sbjct: 1 MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66 QIKLLFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124
Q+++L GF+ + E + + I N+ + I+ + L V N E
Sbjct: 59 QMRILHVNGFNGDGEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPEN 110
Query: 125 GEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI------------------------- 157
++ I ++ P E E + LW D +
Sbjct: 111 QFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 170
Query: 158 --QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLF 208
QDD +L RV T+G+ E +F + + +FDVGGQR+ERRKWI F
Sbjct: 171 IKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCF 224
Query: 209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268
V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 225 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Query: 269 KKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRV 319
+KVL + ++F +D P + A F++ +F + STA
Sbjct: 285 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDG 341
Query: 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+ T A+D + +++ F + ++R HL + LL
Sbjct: 342 RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 68/346 (19%)
Query: 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
K + K+LLLGAGESGKST KQ++++ FD+ + + I++NV + ++VL D ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------IETLWADP 155
L D+ +N+ G+KL R P + + E I LW D
Sbjct: 67 LHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAIRALWEDS 117
Query: 156 AIQD----------------------------------DVLYARVRTTGVVEIQFSPVGE 181
IQ+ D+L AR T G+ E F
Sbjct: 118 GIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF----- 172
Query: 182 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241
+ +++ DVGGQR+ER++W F+ V++++F + SE+DQ L ED Q NR+ E+
Sbjct: 173 -EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 301
+F+ ++ F S +LFLNK D+ E+KV V ++ ++F +++ ++++
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLEFEGDPHCLRDVQ----- 284
Query: 302 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347
KF F+ D+ R + TTA++ + ++ F+ V +T+
Sbjct: 285 ---KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 327
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 178/408 (43%), Gaps = 72/408 (17%)
Query: 9 MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
MG C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI K
Sbjct: 1 MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66 QIKLLFQTGFD-------EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVS 118
Q+++L GF+ + KS A Q IK + KE + +M +V
Sbjct: 59 QMRILHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDIK---NNLKEAIETIVAAMSNLVP 115
Query: 119 S---ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI---------------- 157
N E ++ I ++ P E E + LW D +
Sbjct: 116 PVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCA 175
Query: 158 -----------QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN 199
QDD +L RV T+G+ E +F + + +FDVGGQR+
Sbjct: 176 QYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRD 229
Query: 200 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 259
ERRKWI F V+A+IF A S Y+ + ED Q NR+ E LF + S +L
Sbjct: 230 ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 289
Query: 260 FLNKFDIFEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELY 310
FLNK D+ +KVL + ++F +D P + A F++ +F +
Sbjct: 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI- 348
Query: 311 FQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
STA + T A+D + +++ F + ++R HL + LL
Sbjct: 349 --STASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 179/405 (44%), Gaps = 66/405 (16%)
Query: 9 MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
MG C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI K
Sbjct: 1 MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66 QIKLLFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS-- 119
Q+++L GF+ E + ++ S ++ + + KE + +M +V
Sbjct: 59 QMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVE 118
Query: 120 -ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI------------------- 157
N E ++ I ++ P E E + LW D +
Sbjct: 119 LANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYF 178
Query: 158 --------QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR 202
QDD +L RV T+G+ E +F + + +FDVGGQR+ERR
Sbjct: 179 LDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERR 232
Query: 203 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262
KWI F V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLN
Sbjct: 233 KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN 292
Query: 263 KFDIFEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQS 313
K D+ +KVL + ++F +D P + A F++ +F + S
Sbjct: 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---S 349
Query: 314 TAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
TA + T A+D + +++ F + ++R HL + LL
Sbjct: 350 TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 177/401 (44%), Gaps = 64/401 (15%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
L GF+ E + ++ S ++ + + KE + +M +V N
Sbjct: 63 LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI----------------------- 157
E ++ I ++ P E E + LW D +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 158 ----QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
QDD +L RV T+G+ E +F + + +FDVGGQR+ERRKWI
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
F V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
Query: 267 FEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 317
+KVL + ++F +D P + A F++ +F + STA
Sbjct: 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASG 353
Query: 318 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
+ T A+D + +++ F + ++R HL + LL
Sbjct: 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 68/346 (19%)
Query: 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
K + K+LLLGAGESGKST KQ++++ FD+ + + I++NV + ++VL D ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------IETLWADP 155
L D+ +N+ G+KL R P + + E I LW D
Sbjct: 67 LHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAIRALWEDS 117
Query: 156 AIQD----------------------------------DVLYARVRTTGVVEIQFSPVGE 181
IQ+ D+L AR T G+ E F
Sbjct: 118 GIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF----- 172
Query: 182 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241
+ +++ DVGG R+ER++W F+ V++++F + SE+DQ L ED Q NR+ E+
Sbjct: 173 -EIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 301
+F+ ++ F S +LFLNK D+ E+KV V ++ ++F +++ ++++
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLEFEGDPHCLRDVQ----- 284
Query: 302 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347
KF F+ D+ R + TTA++ + ++ F+ V +T+
Sbjct: 285 ---KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 327
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 58/291 (19%)
Query: 50 LLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNE 109
+ LLG+GESGKSTI KQ+K+LF GF E E ++ S I +NV + L + S L
Sbjct: 8 VXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNH-- 65
Query: 110 TDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------- 158
K+ S+ E +E L + + EL D+E LWAD IQ
Sbjct: 66 --PXKYQPKSK-----EFTTEDPVTLPF---SPELVGDVEALWADEGIQATYEESAKFQL 115
Query: 159 -----------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVG 195
+D+++ R +TTG+ E F + L DVG
Sbjct: 116 PDCAKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFV------VKDIPFHLIDVG 169
Query: 196 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255
GQR+ER+ W+ F V IF +++EYD L+ED +R+ E+ +F + +
Sbjct: 170 GQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGA 229
Query: 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 306
++FLNK D+FE+K+ KVPLN F +Y TG +++++ F
Sbjct: 230 VKLIFLNKXDLFEEKLTKVPLNTI--FPEY----TGGDNAVXGAQYIQQLF 274
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ D+ + ++ +RM+ EL D VL
Sbjct: 66 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL- 124
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 125 ---------LVFANKQDL 133
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244
+G + FD+GG RR W + ++ ++F ++++ R++E+KE D
Sbjct: 64 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKEELD 113
Query: 245 WVLKQPCFEKTSFMLFLNKFD 265
++ ++ NK D
Sbjct: 114 SLMTDETIANVPILILGNKID 134
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 46 FTVWDVGGQDRIRSLWRHYYRNTEGVIF----------VVDSNDRSRIGEAREVMQRMLN 95
Query: 249 QPCFEKTSFMLFLNKFDIFE 268
+ ++++F NK D+ E
Sbjct: 96 EDELRNAAWLVFANKQDLPE 115
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 426
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 427 ---------LIFANKQDL 435
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244
+G + FD+GG RR W + ++ ++F ++++ R++E+KE D
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKEELD 116
Query: 245 WVLKQPCFEKTSFMLFLNKFD 265
++ ++ NK D
Sbjct: 117 SLMTDETIANVPILILGNKID 137
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244
+G + FD+GG RR W + ++ ++F ++++ R++E+KE D
Sbjct: 58 AGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKEELD 107
Query: 245 WVLKQPCFEKTSFMLFLNKFD 265
++ ++ NK D
Sbjct: 108 SLMTDETIANVPILILGNKID 128
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIF----------VVDSNDRSRIGEAREVMQRMLN 112
Query: 249 QPCFEKTSFMLFLNKFDIFE 268
+ ++++F NK D+ E
Sbjct: 113 EDELRNAAWLVFANKQDLPE 132
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 116
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 117 ---------LIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 59 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 117
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 118 ---------LIFANKQDL 126
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 104
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 105 ---------LIFANKQDL 113
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 104
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 105 ---------LIFANKQDL 113
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 242
K S + +FD+ GQ R W H ++ A+IF + + + RM+ KE
Sbjct: 63 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF----------VIDSSDRLRMVVAKEE 112
Query: 243 FDWVLKQPCFE--KTSFMLFLNKFDI 266
D +L P + + + F NK D+
Sbjct: 113 LDTLLNHPDIKHRRIPILFFANKMDL 138
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIF----------VIDSNDRSRIGEAREVMQRMLN 112
Query: 249 QPCFEKTSFMLFLNKFDIFE 268
+ +++F NK D+ E
Sbjct: 113 EDELRNAVWLVFANKQDLPE 132
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII- 104
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 105 ---------LIFANKQDL 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 269
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 270 ---------LVFANKQDL 278
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 104
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 105 ---------LVFANKQDL 113
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H ++ A+IF + + ++R+ E +E +L
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIF----------VVDSNDRDRIGEAREELMKMLN 112
Query: 249 QPCFEKTSFMLFLNKFDI 266
+ ++F NK D+
Sbjct: 113 EDEMRNAILLVFANKHDL 130
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYCNTEGVIF----------VVDSNDRSRIGEAREVMQRMLN 112
Query: 249 QPCFEKTSFMLFLNKFDIFE 268
+ ++++F NK D+ E
Sbjct: 113 EDELCNAAWLVFANKQDLPE 132
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 62 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 120
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 121 ---------LVFANKQDL 129
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +M++ EL D VL
Sbjct: 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL- 133
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 134 ---------LVFANKQDM 142
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 121
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 122 ---------LVFANKQDL 130
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244
+G + FD+GG RR W + ++ ++F +++ +R++E+K +
Sbjct: 77 AGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADH----------SRLVESKVELN 126
Query: 245 WVLKQPCFEKTSFMLFLNKFD 265
++ ++ NK D
Sbjct: 127 ALMTDETISNVPILILGNKID 147
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 49 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 107
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 108 ---------LIFANKQDL 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 59 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 117
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 118 ---------LIFANKQDL 126
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 48 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 106
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 107 ---------LIFANKQDL 115
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +M+ EL D VL
Sbjct: 63 FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVL- 121
Query: 249 QPCFEKTSFMLFLNKFDI 266
+LF NK D+
Sbjct: 122 ---------LLFANKQDL 130
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGGQ R W H + +IF ++ ++ E+ +RM+ +EL D ++
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAII- 121
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 122 ---------LVFANKQDL 130
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 247
+ +FD+GG + R W ++ + AVIF S++ + + M++ +++
Sbjct: 64 AFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRR--- 120
Query: 248 KQPCFEKTSFMLFLNKFD 265
+ P + F+ F NK D
Sbjct: 121 ELPGGGRVPFLFFANKMD 138
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++DVGG R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 48 FTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 106
Query: 249 QPCFEKTSFMLFLNKFDI 266
++F NK D+
Sbjct: 107 ---------LVFANKQDL 115
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 181 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 240
EH+ G ++DVGGQ++ R W + FE +I+ + + + RM + +
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 105
Query: 241 ELFDWVLKQPCFEKTSFMLFLNKFDI 266
+L + + ++F NK D+
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 181 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 240
EH+ G ++DVGGQ++ R W + FE +I+ + + + RM + +
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 105
Query: 241 ELFDWVLKQPCFEKTSFMLFLNKFDI 266
+L + + ++F NK D+
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
K +L+D+GGQ R W GVSA+++ + DQ E KN +
Sbjct: 64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIE-ASKNELHN----- 115
Query: 244 DWVLKQPCFEKTSFMLFLNKFDI 266
+L +P + ++ NK D+
Sbjct: 116 --LLDKPQLQGIPVLVLGNKRDL 136
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 181 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 240
EH+ G ++DVGGQ++ R W + FE +I+ + + + RM + +
Sbjct: 56 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 103
Query: 241 ELFDWVLKQPCFEKTSFMLFLNKFDI 266
+L + + ++F NK D+
Sbjct: 104 RELQSLLVEERLAGATLLIFANKQDL 129
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
K +L+D+GGQ R W GVSA+++ + DQ E KN +
Sbjct: 73 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIE-ASKNELHN----- 124
Query: 244 DWVLKQPCFEKTSFMLFLNKFDI 266
+L +P + ++ NK D+
Sbjct: 125 --LLDKPQLQGIPVLVLGNKRDL 145
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 190 RLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 249
++D+GGQ + R W + +AVIF ++ D+ ++ + M++ +EL D
Sbjct: 65 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD----- 119
Query: 250 PCFEKTSFMLFLNKFD 265
+ ++F NK D
Sbjct: 120 -----AALLVFANKQD 130
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
++++D+GGQ + R W + AVI+ + D+ + M+E +EL
Sbjct: 48 FQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL------ 101
Query: 249 QPCFEKTSFMLFLNKFDI 266
K ++F NK D+
Sbjct: 102 ----RKAILVVFANKQDM 115
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
+ ++D+GGQ R W F AVI+ + + ++RM K +L
Sbjct: 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIY----------VVDSTDRDRMGVAKHELYALLD 117
Query: 249 QPCFEKTSFMLFLNKFDI 266
+ K+ ++F NK D+
Sbjct: 118 EDELRKSLLLIFANKQDL 135
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 176 FSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 234
+ P E G + + FD+GG RR W F V+ ++F L +
Sbjct: 33 WHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF----------LVDAADPE 82
Query: 235 RMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265
R E + D + + F++ NK D
Sbjct: 83 RFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 181 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 240
EH+ G ++DVGGQ++ R W + FE +I+ + + + R + +
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRXQDCQ 105
Query: 241 ELFDWVLKQPCFEKTSFMLFLNKFDI 266
+L + + ++F NK D+
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>pdb|3IYK|G Chain G, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|I Chain I, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|K Chain K, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 600
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 123 EIGEKLSEIGGRLDYPRLTKELAEDIE------TLWADPAIQDDVLYARV 166
++G K+ +GGR D ++ + A DI+ LW +P D + RV
Sbjct: 26 DVGTKIESVGGRHDVTKIPEMNAYDIKQESIRTALWYNPIRNDGFVLPRV 75
>pdb|2HVY|B Chain B, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAY|B Chain B, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 104
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPV 179
GEK+ +G L Y K+ + T W P++ D V+ R++ G+V+ F PV
Sbjct: 5 GEKMKRLGKVLHY---AKQGFLIVRTNWV-PSLNDRVVDKRLQFVGIVKDVFGPV 55
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 176 FSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIF 216
+ P E G + + FD+GG RR W F V+ ++F
Sbjct: 55 WHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
K +++D+GGQ R W GV+A+++ + + + ++ ++
Sbjct: 64 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY----------MIDAADREKIEASRNEL 113
Query: 244 DWVLKQPCFEKTSFMLFLNKFDI 266
+L +P + ++ NK D+
Sbjct: 114 HNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 181 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 240
EH+ G ++DVGG ++ R W + FE +I+ + + + RM + +
Sbjct: 41 EHR--GFKLNIWDVGGLKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 88
Query: 241 ELFDWVLKQPCFEKTSFMLFLNKFDI 266
+L + + ++F NK D+
Sbjct: 89 RELQSLLVEERLAGATLLIFANKQDL 114
>pdb|3NUA|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
pdb|3NUA|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
Length = 238
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 207 LFEGVSAVIFCA-----AISEY--DQTLFEDEQKNRMMETKELFDWVLKQPCFE------ 253
L+EG + I+ I Y D T F E+K ++ E+K + + + FE
Sbjct: 11 LYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQI-ESKGVLNNEITSLIFEMLNKEG 69
Query: 254 -KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFVKKKFEELYF 311
KT F+ LN D KKV VPL V ++ S K+ +E YE FE Y
Sbjct: 70 IKTHFVEKLNDRDQLCKKVEIVPLEVI--VRNVAAGSMAKRLGLEEGYELKTTVFELSYK 127
Query: 312 QSTAPDRV--------------DRVFKIYRTTALDPKLVKKTFK 341
+ D + + + KIY TA +++K+ FK
Sbjct: 128 DDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEILKEAFK 171
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 230
++D+GGQR R W FE +I+ I D+ FE+
Sbjct: 65 VWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEE 102
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 230
++D+GGQR R W FE +I+ I D+ FE+
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,176,998
Number of Sequences: 62578
Number of extensions: 419400
Number of successful extensions: 1546
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 177
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)