Query 018283
Match_columns 358
No_of_seqs 230 out of 1831
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082 G-protein alpha subuni 100.0 9.5E-73 2.1E-77 529.7 27.9 319 9-358 1-354 (354)
2 KOG0085 G protein subunit Galp 100.0 1.8E-72 4E-77 489.8 17.4 321 7-358 4-359 (359)
3 smart00275 G_alpha G protein a 100.0 3.3E-62 7.3E-67 467.7 30.8 305 28-356 2-342 (342)
4 KOG0099 G protein subunit Galp 100.0 5.3E-62 1.2E-66 430.6 21.7 335 9-358 1-379 (379)
5 cd00066 G-alpha G protein alph 100.0 3.1E-59 6.8E-64 444.0 28.6 282 48-354 1-317 (317)
6 PF00503 G-alpha: G-protein al 100.0 1.9E-58 4E-63 451.4 27.9 311 21-347 32-389 (389)
7 KOG0084 GTPase Rab1/YPT1, smal 100.0 4E-29 8.7E-34 213.9 13.8 136 166-351 39-175 (205)
8 KOG0092 GTPase Rab5/YPT51 and 99.9 6.4E-27 1.4E-31 199.6 10.7 121 183-351 50-170 (200)
9 PF00025 Arf: ADP-ribosylation 99.9 1E-25 2.2E-30 196.7 18.4 134 165-347 42-175 (175)
10 PLN00223 ADP-ribosylation fact 99.9 7.9E-26 1.7E-30 198.5 15.6 135 166-350 46-180 (181)
11 KOG0078 GTP-binding protein SE 99.9 3.1E-26 6.7E-31 198.8 11.9 120 183-350 57-176 (207)
12 KOG0070 GTP-binding ADP-ribosy 99.9 2.2E-26 4.7E-31 195.8 10.3 125 166-307 46-178 (181)
13 KOG0073 GTP-binding ADP-ribosy 99.9 2E-25 4.4E-30 185.3 14.9 136 166-350 45-180 (185)
14 KOG0071 GTP-binding ADP-ribosy 99.9 8.5E-26 1.8E-30 182.7 12.2 123 166-305 46-176 (180)
15 KOG0394 Ras-related GTPase [Ge 99.9 1.3E-25 2.9E-30 189.8 13.2 133 172-351 49-181 (210)
16 KOG0086 GTPase Rab4, small G p 99.9 3.1E-25 6.7E-30 181.9 14.9 120 183-350 54-173 (214)
17 cd04120 Rab12 Rab12 subfamily. 99.9 3.5E-25 7.6E-30 197.6 14.5 121 183-350 45-165 (202)
18 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 6.8E-25 1.5E-29 187.3 14.9 136 166-350 52-187 (221)
19 cd04121 Rab40 Rab40 subfamily. 99.9 6.3E-25 1.4E-29 194.1 14.8 119 183-350 51-169 (189)
20 KOG0080 GTPase Rab18, small G 99.9 1.7E-25 3.6E-30 184.9 10.1 117 183-349 56-175 (209)
21 cd04149 Arf6 Arf6 subfamily. 99.9 8E-25 1.7E-29 189.8 14.5 129 167-345 39-167 (168)
22 KOG0098 GTPase Rab2, small G p 99.9 6.6E-25 1.4E-29 185.9 13.2 129 169-351 43-171 (216)
23 smart00177 ARF ARF-like small 99.9 1.4E-24 3.1E-29 189.4 15.3 132 167-348 43-174 (175)
24 PTZ00133 ADP-ribosylation fact 99.9 2.1E-24 4.5E-29 189.7 15.7 134 167-350 47-180 (182)
25 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3E-24 6.6E-29 184.3 14.6 129 167-345 30-158 (159)
26 cd04158 ARD1 ARD1 subfamily. 99.9 1E-23 2.3E-28 182.7 16.0 136 166-350 28-163 (169)
27 KOG0079 GTP-binding protein H- 99.9 1.4E-24 3.1E-29 177.1 9.6 122 183-353 53-174 (198)
28 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 8.6E-24 1.9E-28 184.0 14.9 121 183-350 46-166 (172)
29 KOG0087 GTPase Rab11/YPT3, sma 99.9 4.3E-24 9.4E-29 184.7 12.5 138 166-353 44-181 (222)
30 cd01875 RhoG RhoG subfamily. 99.9 1.9E-23 4.1E-28 184.9 15.8 132 183-350 47-179 (191)
31 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7.4E-24 1.6E-28 186.2 12.5 130 183-349 49-181 (182)
32 cd04133 Rop_like Rop subfamily 99.9 2.7E-23 5.8E-28 181.6 14.5 127 183-348 45-173 (176)
33 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.7E-23 3.6E-28 190.3 13.3 134 183-353 57-193 (232)
34 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 5.5E-23 1.2E-27 183.3 16.0 121 184-350 47-170 (201)
35 cd04122 Rab14 Rab14 subfamily. 99.9 5.9E-23 1.3E-27 177.1 15.5 119 183-349 47-165 (166)
36 cd04126 Rab20 Rab20 subfamily. 99.9 2E-22 4.3E-27 182.0 18.2 151 183-353 40-195 (220)
37 KOG0074 GTP-binding ADP-ribosy 99.9 1.3E-23 2.9E-28 170.2 9.1 121 166-303 46-175 (185)
38 cd04154 Arl2 Arl2 subfamily. 99.9 1.1E-22 2.4E-27 176.7 15.5 129 167-345 44-172 (173)
39 cd04131 Rnd Rnd subfamily. Th 99.9 3.4E-23 7.4E-28 181.3 11.9 129 183-348 45-176 (178)
40 KOG0095 GTPase Rab30, small G 99.9 3.2E-23 7E-28 169.4 10.9 131 166-350 37-171 (213)
41 KOG0093 GTPase Rab3, small G p 99.9 1.1E-22 2.3E-27 166.0 13.6 137 166-352 51-187 (193)
42 cd04127 Rab27A Rab27a subfamil 99.9 1.9E-22 4.1E-27 176.0 15.6 119 184-349 60-178 (180)
43 cd04136 Rap_like Rap-like subf 99.9 1.5E-22 3.2E-27 173.3 14.5 118 183-347 45-162 (163)
44 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.8E-22 6E-27 173.5 15.7 133 166-345 28-166 (167)
45 KOG0075 GTP-binding ADP-ribosy 99.9 6.3E-23 1.4E-27 167.3 10.8 132 166-347 50-181 (186)
46 cd04175 Rap1 Rap1 subgroup. T 99.9 2.5E-22 5.3E-27 172.6 15.0 118 183-347 45-162 (164)
47 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.4E-22 3E-27 176.9 13.2 128 183-346 45-173 (175)
48 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.4E-22 9.5E-27 171.8 16.1 128 166-344 29-162 (164)
49 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4E-22 8.6E-27 171.6 15.2 132 166-345 35-166 (167)
50 PLN03071 GTP-binding nuclear p 99.9 1.7E-22 3.7E-27 182.7 13.3 117 183-350 58-174 (219)
51 cd00879 Sar1 Sar1 subfamily. 99.9 5.6E-22 1.2E-26 174.7 16.0 130 183-346 59-189 (190)
52 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.2E-22 4.8E-27 181.9 13.5 133 183-350 45-178 (222)
53 cd04157 Arl6 Arl6 subfamily. 99.9 5.9E-22 1.3E-26 169.4 15.2 130 166-345 30-161 (162)
54 cd04151 Arl1 Arl1 subfamily. 99.9 5E-22 1.1E-26 169.9 14.3 129 167-345 29-157 (158)
55 cd04176 Rap2 Rap2 subgroup. T 99.9 6.7E-22 1.5E-26 169.6 14.7 118 183-347 45-162 (163)
56 cd01865 Rab3 Rab3 subfamily. 99.9 7.7E-22 1.7E-26 170.0 15.0 119 183-349 46-164 (165)
57 cd04110 Rab35 Rab35 subfamily. 99.9 9.6E-22 2.1E-26 175.1 16.1 122 183-353 51-172 (199)
58 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6.1E-22 1.3E-26 174.0 14.6 123 183-349 45-167 (182)
59 KOG0091 GTPase Rab39, small G 99.9 1.4E-21 3E-26 162.2 15.5 122 183-351 54-176 (213)
60 cd04117 Rab15 Rab15 subfamily. 99.9 8.1E-22 1.8E-26 169.5 14.9 116 183-346 45-160 (161)
61 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.2E-21 2.6E-26 172.1 16.3 123 184-349 49-171 (183)
62 PTZ00369 Ras-like protein; Pro 99.9 1E-21 2.2E-26 173.5 15.7 121 183-350 49-169 (189)
63 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 7.8E-22 1.7E-26 171.8 14.7 119 183-345 55-173 (174)
64 cd04119 RJL RJL (RabJ-Like) su 99.9 7.6E-22 1.6E-26 169.3 14.4 119 183-348 45-167 (168)
65 cd01871 Rac1_like Rac1-like su 99.9 4.4E-22 9.5E-27 173.6 12.8 128 183-346 45-173 (174)
66 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6.4E-22 1.4E-26 168.7 13.5 117 183-347 45-161 (162)
67 cd01867 Rab8_Rab10_Rab13_like 99.9 1.3E-21 2.7E-26 169.0 15.4 119 183-349 48-166 (167)
68 cd04144 Ras2 Ras2 subfamily. 99.9 1.4E-21 3E-26 172.7 15.5 122 183-351 43-166 (190)
69 cd04134 Rho3 Rho3 subfamily. 99.9 7.7E-22 1.7E-26 174.2 13.5 132 183-350 44-176 (189)
70 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.6E-21 3.5E-26 169.3 15.1 122 183-349 45-166 (170)
71 KOG0088 GTPase Rab21, small G 99.9 6E-22 1.3E-26 163.5 11.5 120 183-350 58-177 (218)
72 smart00178 SAR Sar1p-like memb 99.9 2.8E-21 6.1E-26 169.9 15.8 126 183-346 57-183 (184)
73 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.9E-21 6.2E-26 166.3 15.3 119 183-349 47-165 (166)
74 smart00176 RAN Ran (Ras-relate 99.9 1.1E-21 2.3E-26 174.9 12.9 117 183-350 40-156 (200)
75 smart00173 RAS Ras subfamily o 99.9 3.4E-21 7.3E-26 165.3 15.4 119 183-348 44-162 (164)
76 cd04109 Rab28 Rab28 subfamily. 99.9 2.5E-21 5.5E-26 174.5 15.2 120 185-351 48-169 (215)
77 cd00877 Ran Ran (Ras-related n 99.9 2.6E-21 5.6E-26 167.3 14.4 116 183-349 45-160 (166)
78 KOG0081 GTPase Rab27, small G 99.9 2E-22 4.4E-27 166.4 6.9 121 183-350 63-183 (219)
79 cd04116 Rab9 Rab9 subfamily. 99.9 3.4E-21 7.4E-26 166.5 14.4 117 183-346 50-169 (170)
80 cd04103 Centaurin_gamma Centau 99.9 5.5E-21 1.2E-25 164.1 15.2 115 183-346 43-157 (158)
81 cd04124 RabL2 RabL2 subfamily. 99.9 5.3E-21 1.2E-25 164.3 14.8 116 183-350 45-160 (161)
82 PF00071 Ras: Ras family; Int 99.9 3.6E-21 7.8E-26 164.8 13.7 118 183-348 44-161 (162)
83 cd04115 Rab33B_Rab33A Rab33B/R 99.9 6.1E-21 1.3E-25 165.3 15.2 118 183-347 47-168 (170)
84 cd04143 Rhes_like Rhes_like su 99.9 5.5E-21 1.2E-25 175.7 15.7 119 183-347 44-170 (247)
85 cd04111 Rab39 Rab39 subfamily. 99.9 6.2E-21 1.4E-25 171.5 15.5 120 184-350 49-168 (211)
86 cd04125 RabA_like RabA-like su 99.9 8E-21 1.7E-25 167.3 15.6 120 183-350 45-164 (188)
87 cd04177 RSR1 RSR1 subgroup. R 99.9 8.4E-21 1.8E-25 164.0 15.3 121 183-349 45-165 (168)
88 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.7E-21 1.7E-25 162.4 14.6 118 185-345 42-159 (160)
89 KOG0072 GTP-binding ADP-ribosy 99.9 6.2E-22 1.3E-26 161.0 7.0 134 166-349 47-180 (182)
90 cd04140 ARHI_like ARHI subfami 99.9 8.2E-21 1.8E-25 163.6 14.2 116 183-345 45-162 (165)
91 cd01864 Rab19 Rab19 subfamily. 99.9 1.1E-20 2.5E-25 162.5 14.7 117 183-346 48-164 (165)
92 cd04112 Rab26 Rab26 subfamily. 99.9 1.5E-20 3.2E-25 166.3 15.7 122 183-352 46-167 (191)
93 cd04113 Rab4 Rab4 subfamily. 99.9 1E-20 2.2E-25 162.0 14.2 117 183-347 45-161 (161)
94 cd04145 M_R_Ras_like M-Ras/R-R 99.9 8.7E-21 1.9E-25 162.5 13.8 118 183-347 46-163 (164)
95 KOG0076 GTP-binding ADP-ribosy 99.9 2.7E-21 5.8E-26 162.3 10.0 136 166-350 54-189 (197)
96 cd01866 Rab2 Rab2 subfamily. 99.9 1.8E-20 3.9E-25 162.0 15.3 119 183-349 49-167 (168)
97 cd01868 Rab11_like Rab11-like. 99.8 1.9E-20 4.2E-25 160.9 14.6 117 183-347 48-164 (165)
98 PLN03108 Rab family protein; P 99.8 2E-20 4.4E-25 168.1 15.3 120 183-350 51-170 (210)
99 cd01860 Rab5_related Rab5-rela 99.8 4E-20 8.7E-25 158.3 16.5 117 183-347 46-162 (163)
100 cd01892 Miro2 Miro2 subfamily. 99.8 5.1E-21 1.1E-25 166.0 11.0 118 183-349 50-167 (169)
101 KOG0097 GTPase Rab14, small G 99.8 1.3E-20 2.7E-25 152.9 12.1 128 169-350 48-175 (215)
102 cd04106 Rab23_lke Rab23-like s 99.8 2.6E-20 5.5E-25 159.4 14.3 114 184-346 48-161 (162)
103 cd00878 Arf_Arl Arf (ADP-ribos 99.8 6.2E-20 1.3E-24 156.6 16.4 129 167-345 29-157 (158)
104 cd01873 RhoBTB RhoBTB subfamil 99.8 1.7E-20 3.8E-25 166.5 13.4 130 183-345 62-193 (195)
105 cd04132 Rho4_like Rho4-like su 99.8 2E-20 4.3E-25 164.4 13.2 125 184-352 46-171 (187)
106 cd01862 Rab7 Rab7 subfamily. 99.8 6E-20 1.3E-24 158.5 15.7 122 183-350 45-169 (172)
107 cd04118 Rab24 Rab24 subfamily. 99.8 5.2E-20 1.1E-24 162.7 15.5 123 183-350 46-168 (193)
108 PLN03110 Rab GTPase; Provision 99.8 4.4E-20 9.6E-25 166.6 15.1 120 183-350 57-176 (216)
109 cd04142 RRP22 RRP22 subfamily. 99.8 4.5E-20 9.7E-25 164.3 14.4 121 183-349 45-175 (198)
110 cd04135 Tc10 TC10 subfamily. 99.8 2.5E-20 5.4E-25 161.6 12.5 129 183-347 44-173 (174)
111 smart00174 RHO Rho (Ras homolo 99.8 3.8E-20 8.2E-25 160.4 13.1 131 183-349 42-173 (174)
112 cd04155 Arl3 Arl3 subfamily. 99.8 1E-19 2.2E-24 157.5 15.8 119 183-345 54-172 (173)
113 PLN03118 Rab family protein; P 99.8 1.8E-19 4E-24 161.8 17.9 121 183-350 58-179 (211)
114 cd04101 RabL4 RabL4 (Rab-like4 99.8 9.1E-20 2E-24 156.4 14.6 115 184-347 49-163 (164)
115 KOG0083 GTPase Rab26/Rab37, sm 99.8 1.4E-21 3E-26 157.0 3.1 122 183-352 43-164 (192)
116 smart00175 RAB Rab subfamily o 99.8 1.1E-19 2.3E-24 155.5 14.8 119 183-349 45-163 (164)
117 cd01863 Rab18 Rab18 subfamily. 99.8 1.1E-19 2.4E-24 155.4 14.8 116 183-346 45-160 (161)
118 cd04123 Rab21 Rab21 subfamily. 99.8 1E-19 2.2E-24 155.0 14.3 117 183-347 45-161 (162)
119 cd04159 Arl10_like Arl10-like 99.8 1.4E-19 2.9E-24 153.1 14.8 130 166-345 29-158 (159)
120 cd04146 RERG_RasL11_like RERG/ 99.8 1.7E-19 3.6E-24 155.2 15.5 119 183-348 43-164 (165)
121 cd01861 Rab6 Rab6 subfamily. 99.8 1.4E-19 3E-24 154.6 14.3 116 183-346 45-160 (161)
122 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.2E-19 2.7E-24 157.6 12.9 126 183-344 44-170 (173)
123 cd04147 Ras_dva Ras-dva subfam 99.8 2.3E-19 5.1E-24 159.5 14.8 121 183-348 43-163 (198)
124 cd01893 Miro1 Miro1 subfamily. 99.8 4.2E-19 9.1E-24 153.2 15.8 122 183-349 43-165 (166)
125 cd04139 RalA_RalB RalA/RalB su 99.8 4.8E-19 1E-23 151.4 16.0 120 183-349 44-163 (164)
126 cd01870 RhoA_like RhoA-like su 99.8 2.8E-19 6.1E-24 155.1 13.6 129 183-347 45-174 (175)
127 cd04148 RGK RGK subfamily. Th 99.8 6.5E-19 1.4E-23 159.5 15.1 117 183-348 46-163 (221)
128 cd04129 Rho2 Rho2 subfamily. 99.8 1.4E-18 3E-23 153.1 14.1 134 183-354 45-179 (187)
129 cd04114 Rab30 Rab30 subfamily. 99.8 1.1E-18 2.5E-23 150.3 12.9 117 183-347 52-168 (169)
130 cd04137 RheB Rheb (Ras Homolog 99.8 3.7E-18 8E-23 148.9 15.9 122 183-351 45-166 (180)
131 cd04102 RabL3 RabL3 (Rab-like3 99.8 7.9E-19 1.7E-23 156.5 11.2 77 184-270 51-145 (202)
132 KOG0395 Ras-related GTPase [Ge 99.8 1.2E-18 2.6E-23 154.4 11.8 120 183-349 47-166 (196)
133 PTZ00132 GTP-binding nuclear p 99.8 3.7E-18 8E-23 153.7 14.7 116 183-349 54-169 (215)
134 cd00154 Rab Rab family. Rab G 99.8 3.9E-18 8.4E-23 144.0 13.9 114 183-344 45-158 (159)
135 cd00876 Ras Ras family. The R 99.8 4.1E-18 9E-23 144.8 13.9 118 183-347 43-160 (160)
136 PLN00023 GTP-binding protein; 99.8 1.2E-18 2.5E-23 163.6 10.9 75 185-269 81-166 (334)
137 cd00157 Rho Rho (Ras homology) 99.8 7.9E-18 1.7E-22 145.1 13.7 126 183-345 44-170 (171)
138 PTZ00099 rab6; Provisional 99.7 2.1E-17 4.7E-22 144.3 13.8 130 166-349 10-143 (176)
139 KOG4252 GTP-binding protein [S 99.7 1.6E-18 3.4E-23 146.2 5.0 120 183-351 65-184 (246)
140 COG1100 GTPase SAR1 and relate 99.7 1.3E-16 2.7E-21 143.6 15.7 133 186-350 53-187 (219)
141 cd04171 SelB SelB subfamily. 99.7 2.6E-16 5.6E-21 134.4 15.3 114 186-345 50-163 (164)
142 KOG0393 Ras-related small GTPa 99.7 2.1E-17 4.6E-22 144.3 5.6 130 184-349 50-180 (198)
143 cd01890 LepA LepA subfamily. 99.7 1.4E-15 3.1E-20 132.2 14.6 113 184-347 64-176 (179)
144 KOG0077 Vesicle coat complex C 99.7 4.2E-16 9.2E-21 130.1 9.3 130 183-346 60-191 (193)
145 cd01897 NOG NOG1 is a nucleola 99.7 3.6E-15 7.8E-20 128.2 15.4 117 183-348 43-168 (168)
146 cd04105 SR_beta Signal recogni 99.7 4.2E-15 9.1E-20 132.8 16.0 77 184-269 45-124 (203)
147 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 6.7E-15 1.4E-19 126.3 14.7 118 185-347 48-165 (168)
148 cd01878 HflX HflX subfamily. 99.6 1.5E-14 3.2E-19 129.0 17.1 106 187-346 89-203 (204)
149 TIGR00231 small_GTP small GTP- 99.6 8.5E-15 1.8E-19 122.8 14.4 111 186-344 49-160 (161)
150 PRK04213 GTP-binding protein; 99.6 8.4E-15 1.8E-19 130.2 14.5 125 188-348 53-192 (201)
151 cd01891 TypA_BipA TypA (tyrosi 99.6 2.9E-14 6.2E-19 126.3 17.4 71 183-268 61-131 (194)
152 cd00881 GTP_translation_factor 99.6 2.9E-14 6.4E-19 124.5 16.6 127 183-347 58-186 (189)
153 cd01898 Obg Obg subfamily. Th 99.6 2.3E-14 5.1E-19 123.3 14.4 115 187-346 48-169 (170)
154 cd01889 SelB_euk SelB subfamil 99.6 2.7E-14 5.8E-19 126.3 14.8 122 184-348 65-186 (192)
155 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 3.6E-15 7.9E-20 127.2 8.6 130 166-348 40-169 (216)
156 TIGR02528 EutP ethanolamine ut 99.6 1.4E-14 3.1E-19 121.3 10.5 99 190-344 38-141 (142)
157 PF08477 Miro: Miro-like prote 99.6 1.2E-14 2.6E-19 118.0 9.6 71 183-265 46-119 (119)
158 cd01888 eIF2_gamma eIF2-gamma 99.5 1.3E-13 2.8E-18 123.2 14.2 116 187-347 83-198 (203)
159 cd00882 Ras_like_GTPase Ras-li 99.5 1.5E-13 3.3E-18 113.8 12.8 115 184-344 42-156 (157)
160 PF00009 GTP_EFTU: Elongation 99.5 1.3E-12 2.9E-17 115.1 19.2 120 184-347 67-186 (188)
161 cd01879 FeoB Ferrous iron tran 99.5 2.2E-13 4.7E-18 115.6 13.4 107 185-346 41-155 (158)
162 PRK03003 GTP-binding protein D 99.5 2.7E-13 5.8E-18 136.1 14.8 110 184-349 83-200 (472)
163 TIGR00450 mnmE_trmE_thdF tRNA 99.5 7.2E-13 1.6E-17 131.4 17.5 70 183-268 247-324 (442)
164 TIGR03156 GTP_HflX GTP-binding 99.5 7.5E-13 1.6E-17 127.7 17.0 107 185-346 235-350 (351)
165 TIGR03594 GTPase_EngA ribosome 99.5 3.3E-13 7.1E-18 134.0 14.9 117 184-348 217-344 (429)
166 TIGR02729 Obg_CgtA Obg family 99.5 4.5E-13 9.8E-18 128.1 15.0 118 186-347 204-328 (329)
167 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 2.9E-13 6.3E-18 122.6 12.9 138 167-349 33-177 (232)
168 PRK15467 ethanolamine utilizat 99.5 4E-13 8.7E-18 115.2 13.2 105 191-350 41-149 (158)
169 PRK12299 obgE GTPase CgtA; Rev 99.5 9.2E-13 2E-17 126.1 17.0 118 185-349 204-329 (335)
170 cd01881 Obg_like The Obg-like 99.5 4.1E-13 8.9E-18 116.0 13.3 120 186-346 43-175 (176)
171 PRK15494 era GTPase Era; Provi 99.5 3.9E-13 8.5E-18 129.2 14.3 111 184-347 97-215 (339)
172 KOG4423 GTP-binding protein-li 99.5 2E-14 4.3E-19 122.3 4.0 126 184-351 72-197 (229)
173 TIGR00487 IF-2 translation ini 99.5 7.7E-13 1.7E-17 135.1 15.9 112 188-345 136-247 (587)
174 cd01895 EngA2 EngA2 subfamily. 99.5 1.2E-12 2.5E-17 112.3 14.3 114 185-345 48-172 (174)
175 PRK00454 engB GTP-binding prot 99.5 9.9E-13 2.2E-17 116.1 13.6 110 187-347 70-193 (196)
176 PRK05291 trmE tRNA modificatio 99.5 1.5E-12 3.3E-17 129.6 16.2 69 183-268 259-335 (449)
177 TIGR01393 lepA GTP-binding pro 99.5 1.4E-12 3E-17 133.8 16.0 114 184-348 67-180 (595)
178 PRK03003 GTP-binding protein D 99.5 1.5E-12 3.3E-17 130.7 15.7 117 184-349 256-383 (472)
179 TIGR03598 GTPase_YsxC ribosome 99.4 6.5E-13 1.4E-17 116.1 10.9 24 45-68 16-39 (179)
180 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.4E-12 3E-17 110.2 12.6 104 183-347 45-156 (157)
181 cd01894 EngA1 EngA1 subfamily. 99.4 1.2E-12 2.5E-17 110.7 11.7 108 184-347 42-157 (157)
182 PRK12296 obgE GTPase CgtA; Rev 99.4 2.3E-12 4.9E-17 128.4 15.2 126 183-349 202-341 (500)
183 KOG0090 Signal recognition par 99.4 1.3E-12 2.7E-17 114.0 11.6 137 185-346 80-237 (238)
184 CHL00189 infB translation init 99.4 2E-12 4.4E-17 134.2 15.0 116 185-346 293-408 (742)
185 KOG3883 Ras family small GTPas 99.4 4.1E-12 8.9E-17 105.0 13.7 117 185-348 58-175 (198)
186 cd01883 EF1_alpha Eukaryotic e 99.4 1.9E-12 4.1E-17 117.0 12.8 132 167-337 63-194 (219)
187 PRK05433 GTP-binding protein L 99.4 5.1E-12 1.1E-16 129.8 17.4 115 183-348 70-184 (600)
188 TIGR00475 selB selenocysteine- 99.4 3.4E-12 7.3E-17 130.8 15.9 120 183-348 46-166 (581)
189 TIGR01394 TypA_BipA GTP-bindin 99.4 6.4E-12 1.4E-16 128.7 16.8 132 166-347 49-190 (594)
190 PRK05306 infB translation init 99.4 3.1E-12 6.8E-17 133.9 14.4 115 185-345 335-449 (787)
191 COG2229 Predicted GTPase [Gene 99.4 8.8E-12 1.9E-16 106.5 14.3 111 185-346 66-176 (187)
192 KOG1673 Ras GTPases [General f 99.4 1.6E-12 3.6E-17 107.5 8.9 123 183-349 65-187 (205)
193 PRK10218 GTP-binding protein; 99.4 1.3E-11 2.8E-16 126.5 16.5 121 183-347 64-194 (607)
194 PF09439 SRPRB: Signal recogni 99.4 1.5E-12 3.4E-17 113.2 8.3 78 184-270 46-128 (181)
195 PRK00093 GTP-binding protein D 99.4 5.6E-12 1.2E-16 125.4 13.1 104 184-345 46-159 (435)
196 PRK12297 obgE GTPase CgtA; Rev 99.4 1.3E-11 2.8E-16 121.3 15.4 117 186-349 205-328 (424)
197 cd04163 Era Era subfamily. Er 99.4 2.1E-11 4.6E-16 103.4 14.7 112 184-346 48-167 (168)
198 TIGR00436 era GTP-binding prot 99.4 1.9E-11 4.2E-16 114.0 15.7 67 185-267 46-120 (270)
199 TIGR00483 EF-1_alpha translati 99.4 6E-12 1.3E-16 124.9 12.5 84 167-267 71-154 (426)
200 TIGR03680 eif2g_arch translati 99.3 9E-12 1.9E-16 122.8 13.3 117 186-347 79-195 (406)
201 cd01896 DRG The developmentall 99.3 1.9E-11 4.1E-16 111.5 14.4 39 184-222 44-89 (233)
202 TIGR00491 aIF-2 translation in 99.3 2E-11 4.4E-16 124.6 16.0 66 188-268 70-135 (590)
203 PRK11058 GTPase HflX; Provisio 99.3 4E-11 8.7E-16 118.4 17.3 110 188-349 246-363 (426)
204 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.1E-11 4.5E-16 109.4 13.7 71 183-267 73-143 (208)
205 PF02421 FeoB_N: Ferrous iron 99.3 4.4E-11 9.6E-16 101.8 14.8 106 183-343 43-156 (156)
206 PRK00093 GTP-binding protein D 99.3 2.1E-11 4.6E-16 121.3 14.9 117 183-348 217-344 (435)
207 PRK12317 elongation factor 1-a 99.3 1.7E-11 3.6E-16 121.7 13.7 129 166-340 69-197 (425)
208 PRK09518 bifunctional cytidyla 99.3 2.8E-11 6.2E-16 127.2 14.8 117 184-349 495-622 (712)
209 cd00880 Era_like Era (E. coli 99.3 2.4E-11 5.3E-16 101.7 11.5 112 186-346 44-162 (163)
210 cd04168 TetM_like Tet(M)-like 99.3 5.4E-11 1.2E-15 108.8 14.5 157 167-346 50-233 (237)
211 PRK09518 bifunctional cytidyla 99.3 2.6E-11 5.6E-16 127.5 14.0 111 183-349 319-437 (712)
212 PRK00089 era GTPase Era; Revie 99.3 3.7E-11 8E-16 113.3 13.3 112 185-347 51-170 (292)
213 PRK04000 translation initiatio 99.3 3E-11 6.4E-16 119.2 13.1 116 186-347 84-200 (411)
214 TIGR03594 GTPase_EngA ribosome 99.3 3.8E-11 8.2E-16 119.2 13.6 110 183-348 43-160 (429)
215 cd01876 YihA_EngB The YihA (En 99.3 6.5E-11 1.4E-15 100.7 13.1 111 188-346 46-169 (170)
216 TIGR00437 feoB ferrous iron tr 99.3 3.8E-11 8.3E-16 123.2 12.6 110 183-347 37-154 (591)
217 PRK12298 obgE GTPase CgtA; Rev 99.3 1.5E-10 3.2E-15 113.2 15.8 120 187-349 207-334 (390)
218 cd04169 RF3 RF3 subfamily. Pe 99.2 9.6E-11 2.1E-15 109.0 13.0 81 167-268 57-137 (267)
219 PRK10512 selenocysteinyl-tRNA- 99.2 2.3E-10 4.9E-15 117.9 15.3 115 186-347 50-165 (614)
220 PRK04004 translation initiatio 99.2 3.7E-10 8E-15 115.7 16.5 64 189-267 73-136 (586)
221 cd01884 EF_Tu EF-Tu subfamily. 99.2 1.4E-09 3E-14 96.6 17.8 70 183-267 61-131 (195)
222 PRK13351 elongation factor G; 99.2 2.8E-10 6E-15 119.5 15.5 83 166-269 58-140 (687)
223 cd04170 EF-G_bact Elongation f 99.2 6.5E-10 1.4E-14 103.6 15.2 71 183-268 60-130 (268)
224 PRK09554 feoB ferrous iron tra 99.2 3.2E-10 6.8E-15 119.4 14.3 69 183-268 46-126 (772)
225 cd04165 GTPBP1_like GTPBP1-lik 99.2 8.8E-10 1.9E-14 100.0 14.6 70 184-268 81-152 (224)
226 PRK12736 elongation factor Tu; 99.1 1.9E-09 4.2E-14 105.8 17.8 70 183-267 71-141 (394)
227 cd04167 Snu114p Snu114p subfam 99.1 4.7E-10 1E-14 100.9 12.1 69 184-267 68-136 (213)
228 COG0486 ThdF Predicted GTPase 99.1 1.6E-09 3.5E-14 105.3 15.6 80 168-269 252-339 (454)
229 cd04104 p47_IIGP_like p47 (47- 99.1 2.3E-09 5E-14 95.3 14.8 123 187-348 52-184 (197)
230 cd01885 EF2 EF2 (for archaea a 99.1 2.5E-09 5.4E-14 96.8 14.8 70 184-268 70-139 (222)
231 cd01886 EF-G Elongation factor 99.1 1.5E-09 3.3E-14 101.1 13.1 71 183-268 60-130 (270)
232 PRK13768 GTPase; Provisional 99.1 2.4E-09 5.2E-14 98.9 13.5 136 187-347 97-246 (253)
233 PRK00741 prfC peptide chain re 99.1 1.3E-09 2.9E-14 110.3 12.6 71 183-268 75-145 (526)
234 PLN03126 Elongation factor Tu; 99.0 7.3E-09 1.6E-13 103.8 17.2 71 183-268 140-211 (478)
235 TIGR00485 EF-Tu translation el 99.0 9.3E-09 2E-13 101.1 17.7 71 183-268 71-142 (394)
236 PRK12735 elongation factor Tu; 99.0 7.9E-09 1.7E-13 101.6 16.5 70 183-267 71-141 (396)
237 TIGR00503 prfC peptide chain r 99.0 2.6E-09 5.5E-14 108.3 12.3 70 183-267 76-145 (527)
238 PLN00043 elongation factor 1-a 99.0 7.9E-09 1.7E-13 102.9 15.6 131 166-338 70-203 (447)
239 PRK05124 cysN sulfate adenylyl 99.0 1.3E-08 2.9E-13 102.1 16.4 71 183-267 103-173 (474)
240 TIGR02034 CysN sulfate adenyly 99.0 7.2E-09 1.6E-13 102.2 12.9 72 183-268 76-147 (406)
241 CHL00071 tufA elongation facto 99.0 3.1E-08 6.8E-13 97.8 17.2 71 183-268 71-142 (409)
242 PTZ00141 elongation factor 1- 98.9 1.8E-08 3.8E-13 100.5 15.4 120 183-338 81-203 (446)
243 KOG1191 Mitochondrial GTPase [ 98.9 4.4E-08 9.6E-13 95.4 17.5 132 171-350 306-452 (531)
244 PF10662 PduV-EutP: Ethanolami 98.9 1.4E-08 3.1E-13 84.8 11.6 100 190-344 39-142 (143)
245 PRK09866 hypothetical protein; 98.9 3.2E-08 7E-13 100.0 16.0 117 186-345 229-350 (741)
246 cd01850 CDC_Septin CDC/Septin. 98.9 5E-09 1.1E-13 98.0 8.9 21 47-67 4-24 (276)
247 PRK12740 elongation factor G; 98.9 2.5E-08 5.4E-13 104.5 15.1 84 165-269 44-127 (668)
248 KOG1532 GTPase XAB1, interacts 98.9 4.3E-08 9.3E-13 89.0 14.3 133 185-348 114-264 (366)
249 KOG1707 Predicted Ras related/ 98.9 8.7E-09 1.9E-13 102.0 10.1 121 185-348 54-175 (625)
250 KOG3886 GTP-binding protein [S 98.9 3.8E-09 8.3E-14 93.4 6.8 75 185-269 51-131 (295)
251 TIGR00484 EF-G translation elo 98.8 2E-08 4.2E-13 105.5 12.2 71 183-268 71-141 (689)
252 PF03029 ATP_bind_1: Conserved 98.8 2.6E-08 5.7E-13 91.1 11.0 132 188-347 92-236 (238)
253 PRK00049 elongation factor Tu; 98.8 1.8E-07 3.8E-12 92.1 17.1 70 183-267 71-141 (396)
254 COG1160 Predicted GTPases [Gen 98.8 9.2E-08 2E-12 92.9 14.8 119 183-348 222-351 (444)
255 PRK05506 bifunctional sulfate 98.8 6.5E-08 1.4E-12 100.7 14.5 71 183-267 100-170 (632)
256 COG1160 Predicted GTPases [Gen 98.8 4.3E-08 9.3E-13 95.2 11.8 108 184-347 48-164 (444)
257 TIGR00490 aEF-2 translation el 98.8 3.5E-08 7.6E-13 104.0 12.1 71 183-268 82-152 (720)
258 PLN03127 Elongation factor Tu; 98.8 4E-07 8.8E-12 90.7 18.3 82 166-268 109-191 (447)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 3.3E-07 7.3E-12 81.2 15.8 75 183-268 45-130 (196)
260 COG1159 Era GTPase [General fu 98.8 1.7E-07 3.6E-12 86.6 13.6 70 185-269 52-129 (298)
261 PF01926 MMR_HSR1: 50S ribosom 98.7 9E-08 2E-12 77.3 9.5 64 183-263 43-116 (116)
262 cd01899 Ygr210 Ygr210 subfamil 98.7 4.1E-07 8.9E-12 86.6 15.1 38 185-222 67-111 (318)
263 PRK12739 elongation factor G; 98.7 1.7E-07 3.7E-12 98.5 12.0 72 183-269 69-140 (691)
264 KOG0462 Elongation factor-type 98.7 5E-07 1.1E-11 89.1 14.2 114 183-347 121-234 (650)
265 PTZ00327 eukaryotic translatio 98.6 6E-07 1.3E-11 89.5 13.8 116 187-347 117-232 (460)
266 COG5256 TEF1 Translation elong 98.6 4.6E-07 1E-11 86.9 12.1 133 165-338 69-201 (428)
267 COG1084 Predicted GTPase [Gene 98.6 7E-07 1.5E-11 83.4 12.4 84 168-268 202-294 (346)
268 PRK09435 membrane ATPase/prote 98.5 6.6E-06 1.4E-10 78.6 17.0 116 183-348 145-260 (332)
269 COG0532 InfB Translation initi 98.5 3.5E-07 7.7E-12 90.3 7.9 117 185-347 53-169 (509)
270 KOG1489 Predicted GTP-binding 98.5 3.9E-06 8.5E-11 78.0 14.2 111 189-345 246-364 (366)
271 COG0370 FeoB Fe2+ transport sy 98.5 2.7E-06 5.9E-11 86.5 14.2 119 167-346 36-162 (653)
272 PF05049 IIGP: Interferon-indu 98.5 2.2E-06 4.9E-11 82.6 12.8 121 187-346 86-216 (376)
273 TIGR00101 ureG urease accessor 98.5 3.6E-06 7.7E-11 75.0 13.3 26 323-348 171-196 (199)
274 TIGR00157 ribosome small subun 98.4 4.5E-07 9.8E-12 83.4 7.4 97 198-345 24-120 (245)
275 PTZ00416 elongation factor 2; 98.4 1.7E-06 3.7E-11 92.6 11.7 68 185-267 90-157 (836)
276 KOG1423 Ras-like GTPase ERA [C 98.4 4.1E-06 9E-11 77.5 12.5 138 183-347 116-270 (379)
277 PRK00007 elongation factor G; 98.4 4.2E-06 9E-11 88.1 14.3 72 183-269 71-142 (693)
278 PLN00116 translation elongatio 98.4 2.7E-06 5.9E-11 91.2 12.1 68 185-267 96-163 (843)
279 COG0536 Obg Predicted GTPase [ 98.4 5.2E-06 1.1E-10 78.0 12.1 122 187-351 207-336 (369)
280 COG0481 LepA Membrane GTPase L 98.4 4.8E-06 1E-10 81.1 12.1 114 183-347 72-185 (603)
281 COG0218 Predicted GTPase [Gene 98.3 1.9E-05 4E-10 69.4 14.5 113 189-348 72-197 (200)
282 cd01853 Toc34_like Toc34-like 98.3 1.2E-05 2.7E-10 74.0 13.5 27 41-67 25-51 (249)
283 KOG1490 GTP-binding protein CR 98.3 3.5E-06 7.6E-11 82.5 9.9 125 183-351 211-344 (620)
284 PRK07560 elongation factor EF- 98.3 6.6E-06 1.4E-10 87.1 11.6 71 184-269 84-154 (731)
285 PF04548 AIG1: AIG1 family; I 98.3 2.1E-05 4.6E-10 70.7 13.3 75 183-268 45-130 (212)
286 smart00010 small_GTPase Small 98.3 2.7E-06 5.8E-11 68.8 6.8 55 202-269 38-92 (124)
287 KOG1144 Translation initiation 98.2 1.3E-05 2.8E-10 81.6 12.4 138 188-349 541-688 (1064)
288 TIGR00073 hypB hydrogenase acc 98.2 2E-05 4.4E-10 70.4 12.4 24 323-346 182-205 (207)
289 cd01882 BMS1 Bms1. Bms1 is an 98.2 5.1E-05 1.1E-09 68.9 14.5 66 185-268 81-147 (225)
290 KOG1145 Mitochondrial translat 98.2 2.5E-05 5.5E-10 77.3 13.1 116 185-346 199-314 (683)
291 TIGR00991 3a0901s02IAP34 GTP-b 98.2 3E-05 6.5E-10 73.1 12.7 24 44-67 35-58 (313)
292 COG3596 Predicted GTPase [Gene 98.2 3.5E-05 7.5E-10 70.6 12.6 130 185-347 85-221 (296)
293 COG1217 TypA Predicted membran 98.1 2.8E-05 6E-10 75.7 12.2 121 183-347 64-194 (603)
294 cd01855 YqeH YqeH. YqeH is an 98.1 1.1E-05 2.4E-10 71.0 8.8 100 200-347 24-124 (190)
295 PRK14845 translation initiatio 98.1 1.7E-05 3.7E-10 85.8 11.6 64 189-267 528-591 (1049)
296 TIGR00750 lao LAO/AO transport 98.1 6.4E-05 1.4E-09 71.2 14.3 24 324-347 214-237 (300)
297 KOG3905 Dynein light intermedi 98.1 0.00011 2.4E-09 68.6 14.5 71 254-350 222-292 (473)
298 COG2262 HflX GTPases [General 98.1 0.00023 5E-09 68.7 16.7 110 186-348 239-356 (411)
299 TIGR03597 GTPase_YqeH ribosome 98.0 2.6E-05 5.5E-10 75.8 9.4 102 197-346 50-151 (360)
300 KOG0705 GTPase-activating prot 98.0 1.7E-05 3.6E-10 78.4 7.2 119 183-350 73-191 (749)
301 KOG0458 Elongation factor 1 al 98.0 0.00022 4.7E-09 71.4 14.7 92 164-268 238-329 (603)
302 PF05783 DLIC: Dynein light in 97.9 0.00025 5.5E-09 70.9 14.9 73 254-352 196-268 (472)
303 PRK09602 translation-associate 97.9 4.7E-05 1E-09 74.7 8.1 37 185-221 70-113 (396)
304 KOG3887 Predicted small GTPase 97.8 0.00024 5.1E-09 63.9 11.5 124 185-349 73-203 (347)
305 PRK10463 hydrogenase nickel in 97.8 0.00055 1.2E-08 64.1 14.1 24 323-346 264-287 (290)
306 cd01859 MJ1464 MJ1464. This f 97.7 9.1E-05 2E-09 62.9 7.1 95 200-348 2-96 (156)
307 COG0378 HypB Ni2+-binding GTPa 97.7 0.00034 7.4E-09 61.1 10.6 25 323-347 176-200 (202)
308 KOG0461 Selenocysteine-specifi 97.7 0.001 2.2E-08 62.8 14.3 125 182-348 65-193 (522)
309 COG2895 CysN GTPases - Sulfate 97.7 0.00046 9.9E-09 65.3 11.9 110 183-338 82-193 (431)
310 COG1163 DRG Predicted GTPase [ 97.7 0.00027 5.8E-09 66.2 10.2 39 183-221 106-151 (365)
311 smart00053 DYNc Dynamin, GTPas 97.7 0.00025 5.4E-09 64.9 10.0 70 185-268 123-206 (240)
312 COG4917 EutP Ethanolamine util 97.7 0.00036 7.8E-09 56.5 9.6 99 191-345 41-143 (148)
313 COG4108 PrfC Peptide chain rel 97.7 0.00016 3.5E-09 70.1 8.4 74 173-267 73-146 (528)
314 COG0480 FusA Translation elong 97.5 0.00046 1E-08 72.1 10.4 72 183-269 71-143 (697)
315 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00031 6.7E-09 49.0 5.1 45 211-265 14-58 (58)
316 PRK12289 GTPase RsgA; Reviewed 97.4 0.00085 1.8E-08 64.9 9.1 91 204-346 83-173 (352)
317 KOG0468 U5 snRNP-specific prot 97.4 0.00037 8.1E-09 70.6 6.6 72 183-269 193-264 (971)
318 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0023 5E-08 65.8 11.9 75 184-267 163-249 (763)
319 cd01858 NGP_1 NGP-1. Autoanti 97.3 0.0007 1.5E-08 57.6 6.6 48 208-268 6-53 (157)
320 PF00735 Septin: Septin; Inte 97.3 0.0012 2.5E-08 62.0 8.3 21 47-67 4-24 (281)
321 COG3640 CooC CO dehydrogenase 97.2 0.0053 1.1E-07 55.3 11.5 66 185-267 132-198 (255)
322 PRK00098 GTPase RsgA; Reviewed 97.2 0.001 2.2E-08 63.0 7.5 87 208-345 78-164 (298)
323 PF00350 Dynamin_N: Dynamin fa 97.2 0.0037 8.1E-08 53.3 10.4 65 186-264 100-168 (168)
324 COG3276 SelB Selenocysteine-sp 97.1 0.0066 1.4E-07 59.2 11.8 116 183-347 46-161 (447)
325 COG1703 ArgK Putative periplas 97.1 0.01 2.2E-07 55.4 12.5 33 323-357 229-261 (323)
326 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.0021 4.6E-08 60.5 7.5 88 206-345 74-161 (287)
327 PRK13796 GTPase YqeH; Provisio 97.0 0.0041 8.8E-08 60.6 9.6 99 199-346 58-157 (365)
328 PRK12288 GTPase RsgA; Reviewed 97.0 0.0052 1.1E-07 59.4 10.0 87 209-345 119-205 (347)
329 COG5257 GCD11 Translation init 97.0 0.0048 1E-07 57.9 9.2 113 188-348 87-202 (415)
330 PTZ00258 GTP-binding protein; 97.0 0.0033 7.1E-08 61.5 8.6 24 45-68 19-42 (390)
331 TIGR03348 VI_IcmF type VI secr 96.9 0.0021 4.6E-08 71.6 7.2 76 189-267 163-256 (1169)
332 KOG0057 Mitochondrial Fe/S clu 96.8 0.0044 9.5E-08 62.0 8.2 27 46-72 377-403 (591)
333 TIGR02836 spore_IV_A stage IV 96.8 0.032 6.9E-07 54.7 13.8 27 42-68 12-38 (492)
334 PF03308 ArgK: ArgK protein; 96.8 0.0074 1.6E-07 55.4 8.6 26 322-347 204-229 (266)
335 PRK09601 GTP-binding protein Y 96.7 0.011 2.4E-07 57.3 10.0 21 48-68 3-23 (364)
336 COG0050 TufB GTPases - transla 96.7 0.042 9.2E-07 51.2 13.1 84 165-268 59-142 (394)
337 KOG1143 Predicted translation 96.7 0.001 2.3E-08 63.3 2.7 70 185-269 247-318 (591)
338 cd01900 YchF YchF subfamily. 96.6 0.013 2.7E-07 54.8 9.2 35 187-221 62-103 (274)
339 cd01856 YlqF YlqF. Proteins o 96.6 0.0069 1.5E-07 52.3 7.0 90 202-347 11-100 (171)
340 cd01859 MJ1464 MJ1464. This f 96.5 0.011 2.4E-07 50.0 7.5 23 46-68 100-122 (156)
341 PRK08118 topology modulation p 96.5 0.0024 5.2E-08 55.1 3.2 23 49-71 3-25 (167)
342 PF13207 AAA_17: AAA domain; P 96.5 0.0026 5.7E-08 51.2 3.3 22 49-70 1-22 (121)
343 cd01857 HSR1_MMR1 HSR1/MMR1. 96.4 0.0093 2E-07 49.7 6.5 49 207-268 8-56 (141)
344 PRK07261 topology modulation p 96.4 0.0029 6.2E-08 54.9 3.3 23 48-70 1-23 (171)
345 COG0563 Adk Adenylate kinase a 96.4 0.0024 5.2E-08 55.8 2.8 21 48-68 1-21 (178)
346 PRK14722 flhF flagellar biosyn 96.3 0.014 3E-07 56.8 8.1 74 185-267 214-294 (374)
347 PF02492 cobW: CobW/HypB/UreG, 96.3 0.036 7.8E-07 48.2 10.0 19 50-68 3-21 (178)
348 cd01849 YlqF_related_GTPase Yl 96.3 0.036 7.7E-07 46.9 9.6 24 324-347 61-84 (155)
349 PRK11889 flhF flagellar biosyn 96.2 0.017 3.6E-07 56.5 7.8 22 47-68 241-262 (436)
350 COG4619 ABC-type uncharacteriz 96.1 0.0059 1.3E-07 52.4 3.4 26 47-72 29-54 (223)
351 TIGR00064 ftsY signal recognit 96.0 0.063 1.4E-06 50.1 10.6 66 185-267 153-230 (272)
352 PRK10416 signal recognition pa 96.0 0.056 1.2E-06 51.6 10.2 23 47-69 114-136 (318)
353 PF00448 SRP54: SRP54-type pro 96.0 0.052 1.1E-06 48.1 9.4 67 184-267 81-153 (196)
354 PRK06217 hypothetical protein; 96.0 0.0059 1.3E-07 53.3 3.3 24 48-71 2-25 (183)
355 KOG1707 Predicted Ras related/ 96.0 0.044 9.4E-07 55.4 9.5 48 209-269 494-541 (625)
356 COG1126 GlnQ ABC-type polar am 96.0 0.0051 1.1E-07 54.8 2.7 25 47-71 28-52 (240)
357 PF13671 AAA_33: AAA domain; P 95.9 0.0059 1.3E-07 50.6 2.9 19 50-68 2-20 (143)
358 COG5019 CDC3 Septin family pro 95.9 0.096 2.1E-06 50.2 11.2 23 45-67 21-43 (373)
359 PF13555 AAA_29: P-loop contai 95.9 0.0096 2.1E-07 42.5 3.4 23 49-71 25-47 (62)
360 cd03115 SRP The signal recogni 95.8 0.12 2.6E-06 44.4 10.5 20 49-68 2-21 (173)
361 TIGR03596 GTPase_YlqF ribosome 95.7 0.049 1.1E-06 50.9 8.5 91 203-349 14-104 (276)
362 PRK10078 ribose 1,5-bisphospho 95.6 0.0083 1.8E-07 52.6 2.7 23 49-71 4-26 (186)
363 cd00071 GMPK Guanosine monopho 95.6 0.011 2.4E-07 49.3 3.3 24 50-73 2-25 (137)
364 COG1162 Predicted GTPases [Gen 95.6 0.058 1.3E-06 50.6 8.3 19 49-67 166-184 (301)
365 KOG0464 Elongation factor G [T 95.6 0.0088 1.9E-07 57.8 2.8 84 164-268 85-168 (753)
366 TIGR01425 SRP54_euk signal rec 95.5 0.098 2.1E-06 51.9 10.1 66 185-267 181-252 (429)
367 KOG0054 Multidrug resistance-a 95.5 0.019 4E-07 64.1 5.5 151 45-268 545-707 (1381)
368 COG1116 TauB ABC-type nitrate/ 95.4 0.012 2.6E-07 53.6 3.0 24 49-72 31-54 (248)
369 PRK12724 flagellar biosynthesi 95.4 0.16 3.5E-06 50.2 11.0 20 49-68 225-244 (432)
370 TIGR02322 phosphon_PhnN phosph 95.4 0.014 3.1E-07 50.6 3.3 22 49-70 3-24 (179)
371 COG0012 Predicted GTPase, prob 95.4 0.039 8.4E-07 53.1 6.5 37 186-222 66-109 (372)
372 TIGR00092 GTP-binding protein 95.3 0.1 2.2E-06 50.7 9.3 36 187-222 67-109 (368)
373 COG1117 PstB ABC-type phosphat 95.3 0.013 2.9E-07 52.2 3.0 23 50-72 36-58 (253)
374 PRK03839 putative kinase; Prov 95.3 0.015 3.3E-07 50.5 3.2 23 49-71 2-24 (180)
375 COG3839 MalK ABC-type sugar tr 95.3 0.013 2.8E-07 56.1 2.9 24 49-72 31-54 (338)
376 PF13238 AAA_18: AAA domain; P 95.2 0.016 3.5E-07 46.7 3.0 19 50-68 1-19 (129)
377 PF13521 AAA_28: AAA domain; P 95.2 0.012 2.7E-07 50.1 2.4 22 49-70 1-22 (163)
378 PRK12727 flagellar biosynthesi 95.2 0.21 4.6E-06 50.7 11.3 22 47-68 350-371 (559)
379 cd00820 PEPCK_HprK Phosphoenol 95.2 0.016 3.5E-07 46.1 2.6 19 49-67 17-35 (107)
380 cd02038 FleN-like FleN is a me 95.2 0.11 2.4E-06 43.1 8.0 65 187-266 45-109 (139)
381 cd02019 NK Nucleoside/nucleoti 95.1 0.02 4.4E-07 41.6 2.9 19 50-68 2-20 (69)
382 PRK01889 GTPase RsgA; Reviewed 95.1 0.13 2.9E-06 49.9 9.4 47 208-268 110-156 (356)
383 COG1136 SalX ABC-type antimicr 95.1 0.018 3.9E-07 52.0 3.0 23 49-71 33-55 (226)
384 PLN03232 ABC transporter C fam 95.1 0.018 3.9E-07 66.0 3.7 46 47-92 643-700 (1495)
385 KOG0447 Dynamin-like GTP bindi 95.0 0.8 1.7E-05 46.3 14.5 58 199-269 437-494 (980)
386 COG1125 OpuBA ABC-type proline 95.0 0.018 3.9E-07 52.7 3.0 24 49-72 29-52 (309)
387 COG3842 PotA ABC-type spermidi 95.0 0.018 3.8E-07 55.5 3.0 23 50-72 34-56 (352)
388 PF03193 DUF258: Protein of un 95.0 0.034 7.3E-07 47.7 4.4 21 48-68 36-56 (161)
389 COG4639 Predicted kinase [Gene 95.0 0.056 1.2E-06 45.8 5.5 17 50-66 5-21 (168)
390 PF00005 ABC_tran: ABC transpo 95.0 0.02 4.3E-07 47.1 2.9 21 48-68 12-32 (137)
391 PRK06731 flhF flagellar biosyn 95.0 0.35 7.5E-06 45.1 11.3 20 48-67 76-95 (270)
392 PRK14530 adenylate kinase; Pro 94.9 0.022 4.7E-07 51.1 3.2 25 48-72 4-28 (215)
393 PTZ00088 adenylate kinase 1; P 94.9 0.022 4.8E-07 51.8 3.3 27 46-72 5-31 (229)
394 cd01983 Fer4_NifH The Fer4_Nif 94.9 0.37 8E-06 36.2 9.8 19 50-68 2-20 (99)
395 PRK13949 shikimate kinase; Pro 94.9 0.025 5.4E-07 48.9 3.4 24 49-72 3-26 (169)
396 PRK14532 adenylate kinase; Pro 94.9 0.024 5.1E-07 49.6 3.3 23 49-71 2-24 (188)
397 cd02023 UMPK Uridine monophosp 94.8 0.027 5.7E-07 49.7 3.5 22 50-71 2-23 (198)
398 PRK00771 signal recognition pa 94.8 0.22 4.9E-06 49.6 10.3 22 47-68 95-116 (437)
399 TIGR03263 guanyl_kin guanylate 94.8 0.021 4.6E-07 49.4 2.8 21 49-69 3-23 (180)
400 PRK12726 flagellar biosynthesi 94.8 0.32 6.9E-06 47.5 11.0 22 47-68 206-227 (407)
401 cd03238 ABC_UvrA The excision 94.8 0.023 4.9E-07 49.6 2.8 21 47-67 21-41 (176)
402 COG4525 TauB ABC-type taurine 94.8 0.024 5.1E-07 50.0 2.8 24 48-71 32-55 (259)
403 PRK14974 cell division protein 94.7 0.29 6.3E-06 47.1 10.6 22 47-68 140-161 (336)
404 cd01428 ADK Adenylate kinase ( 94.7 0.028 6E-07 49.1 3.3 24 49-72 1-24 (194)
405 COG3638 ABC-type phosphate/pho 94.7 0.026 5.5E-07 51.1 3.0 65 194-269 149-213 (258)
406 PRK09270 nucleoside triphospha 94.7 0.061 1.3E-06 48.8 5.6 38 32-69 18-55 (229)
407 PF00004 AAA: ATPase family as 94.7 0.027 5.8E-07 45.6 2.9 19 50-68 1-19 (132)
408 TIGR01360 aden_kin_iso1 adenyl 94.7 0.024 5.2E-07 49.2 2.7 21 49-69 5-25 (188)
409 PRK02496 adk adenylate kinase; 94.7 0.028 6.1E-07 48.9 3.2 24 48-71 2-25 (184)
410 PRK09563 rbgA GTPase YlqF; Rev 94.7 0.079 1.7E-06 49.8 6.4 90 204-349 18-107 (287)
411 PLN03130 ABC transporter C fam 94.7 0.029 6.4E-07 64.6 4.1 47 46-92 642-700 (1622)
412 PRK14723 flhF flagellar biosyn 94.6 0.18 3.9E-06 53.4 9.5 20 49-68 187-206 (767)
413 TIGR01351 adk adenylate kinase 94.6 0.03 6.5E-07 50.0 3.3 23 49-71 1-23 (210)
414 TIGR01313 therm_gnt_kin carboh 94.6 0.026 5.5E-07 48.1 2.7 21 50-70 1-21 (163)
415 TIGR00235 udk uridine kinase. 94.6 0.029 6.3E-07 50.0 3.2 25 47-71 6-30 (207)
416 PRK14531 adenylate kinase; Pro 94.6 0.033 7.1E-07 48.7 3.4 24 48-71 3-26 (183)
417 COG3523 IcmF Type VI protein s 94.6 0.1 2.3E-06 57.5 7.9 74 190-268 177-270 (1188)
418 PRK00300 gmk guanylate kinase; 94.6 0.031 6.8E-07 49.4 3.4 26 46-71 4-29 (205)
419 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.031 6.8E-07 48.5 3.3 22 50-71 2-23 (183)
420 PRK08233 hypothetical protein; 94.6 0.027 5.8E-07 48.6 2.8 21 48-68 4-24 (182)
421 cd00227 CPT Chloramphenicol (C 94.6 0.036 7.7E-07 48.0 3.5 23 49-71 4-26 (175)
422 smart00382 AAA ATPases associa 94.5 0.029 6.2E-07 45.1 2.8 21 48-68 3-23 (148)
423 COG1120 FepC ABC-type cobalami 94.5 0.028 6.2E-07 51.8 2.9 24 49-72 30-53 (258)
424 PRK00279 adk adenylate kinase; 94.4 0.036 7.7E-07 49.7 3.3 24 48-71 1-24 (215)
425 PRK14738 gmk guanylate kinase; 94.4 0.029 6.3E-07 50.1 2.7 22 47-68 13-34 (206)
426 PRK05480 uridine/cytidine kina 94.4 0.034 7.4E-07 49.5 3.2 26 45-70 4-29 (209)
427 cd02021 GntK Gluconate kinase 94.4 0.031 6.7E-07 46.8 2.8 20 50-69 2-21 (150)
428 TIGR01526 nadR_NMN_Atrans nico 94.3 0.039 8.4E-07 52.9 3.5 30 48-77 163-192 (325)
429 COG4598 HisP ABC-type histidin 94.3 0.041 9E-07 47.9 3.1 25 49-73 34-58 (256)
430 PRK10867 signal recognition pa 94.3 0.47 1E-05 47.3 11.0 21 47-67 100-120 (433)
431 PF13173 AAA_14: AAA domain 94.3 0.036 7.8E-07 45.3 2.8 19 50-68 5-23 (128)
432 PRK13695 putative NTPase; Prov 94.2 0.036 7.8E-07 47.9 2.9 20 48-67 1-20 (174)
433 PRK12723 flagellar biosynthesi 94.2 0.4 8.7E-06 47.1 10.4 21 48-68 175-195 (388)
434 KOG0410 Predicted GTP binding 94.2 0.61 1.3E-05 44.3 10.8 20 49-68 180-199 (410)
435 PRK14737 gmk guanylate kinase; 94.2 0.036 7.9E-07 48.7 2.8 19 50-68 7-25 (186)
436 cd03264 ABC_drug_resistance_li 94.2 0.04 8.7E-07 49.1 3.1 25 46-71 25-49 (211)
437 PRK00625 shikimate kinase; Pro 94.2 0.048 1E-06 47.4 3.4 23 49-71 2-24 (173)
438 cd00009 AAA The AAA+ (ATPases 94.1 0.08 1.7E-06 42.9 4.7 22 47-68 19-40 (151)
439 cd01858 NGP_1 NGP-1. Autoanti 94.1 0.038 8.2E-07 46.8 2.8 23 46-68 101-123 (157)
440 cd03283 ABC_MutS-like MutS-lik 94.1 0.037 7.9E-07 49.2 2.7 20 49-68 27-46 (199)
441 cd03222 ABC_RNaseL_inhibitor T 94.1 0.038 8.2E-07 48.2 2.7 25 47-71 25-49 (177)
442 PF07728 AAA_5: AAA domain (dy 94.1 0.041 8.8E-07 45.5 2.8 19 50-68 2-20 (139)
443 TIGR00960 3a0501s02 Type II (G 94.1 0.039 8.4E-07 49.3 2.9 26 47-72 29-54 (216)
444 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.1 0.039 8.5E-07 49.3 2.9 25 47-71 30-54 (218)
445 KOG0460 Mitochondrial translat 94.1 0.81 1.8E-05 43.7 11.5 83 165-267 101-183 (449)
446 TIGR03238 dnd_assoc_3 dnd syst 94.1 0.054 1.2E-06 54.1 4.0 20 46-65 31-50 (504)
447 COG2274 SunT ABC-type bacterio 94.0 0.036 7.8E-07 58.5 2.9 28 46-73 498-525 (709)
448 cd03226 ABC_cobalt_CbiO_domain 94.0 0.042 9.1E-07 48.7 2.9 25 47-71 26-50 (205)
449 cd03292 ABC_FtsE_transporter F 94.0 0.043 9.3E-07 48.9 2.9 25 47-71 27-51 (214)
450 TIGR02203 MsbA_lipidA lipid A 94.0 0.036 7.9E-07 57.1 2.8 27 46-72 357-383 (571)
451 TIGR03375 type_I_sec_LssB type 94.0 0.034 7.4E-07 58.8 2.6 28 46-73 490-517 (694)
452 PRK06762 hypothetical protein; 94.0 0.053 1.2E-06 46.3 3.4 23 49-71 4-26 (166)
453 TIGR02868 CydC thiol reductant 94.0 0.043 9.4E-07 56.0 3.3 28 46-73 360-387 (529)
454 TIGR01166 cbiO cobalt transpor 94.0 0.043 9.3E-07 48.0 2.9 23 49-71 20-42 (190)
455 PRK05057 aroK shikimate kinase 94.0 0.053 1.2E-06 46.9 3.4 25 48-72 5-29 (172)
456 cd02025 PanK Pantothenate kina 93.9 0.045 9.7E-07 49.4 3.0 22 50-71 2-23 (220)
457 TIGR00958 3a01208 Conjugate Tr 93.9 0.026 5.7E-07 59.9 1.7 28 46-73 506-533 (711)
458 TIGR02315 ABC_phnC phosphonate 93.9 0.044 9.5E-07 49.9 2.9 25 47-71 28-52 (243)
459 cd01857 HSR1_MMR1 HSR1/MMR1. 93.9 0.046 9.9E-07 45.5 2.8 21 48-68 84-104 (141)
460 PRK14529 adenylate kinase; Pro 93.9 0.052 1.1E-06 49.1 3.3 25 48-72 1-25 (223)
461 TIGR00554 panK_bact pantothena 93.9 0.074 1.6E-06 50.1 4.4 27 45-71 60-86 (290)
462 TIGR02673 FtsE cell division A 93.9 0.046 9.9E-07 48.8 2.9 25 47-71 28-52 (214)
463 PRK14528 adenylate kinase; Pro 93.9 0.053 1.1E-06 47.6 3.2 23 49-71 3-25 (186)
464 COG1122 CbiO ABC-type cobalt t 93.9 0.043 9.3E-07 50.1 2.7 27 47-73 30-56 (235)
465 PRK15177 Vi polysaccharide exp 93.9 0.045 9.8E-07 49.0 2.8 23 49-71 15-37 (213)
466 PRK00131 aroK shikimate kinase 93.9 0.059 1.3E-06 46.0 3.5 26 47-72 4-29 (175)
467 KOG2486 Predicted GTPase [Gene 93.9 0.44 9.6E-06 44.2 9.1 22 46-67 135-156 (320)
468 KOG2655 Septin family protein 93.8 0.22 4.7E-06 48.1 7.5 21 47-67 21-41 (366)
469 cd03269 ABC_putative_ATPase Th 93.8 0.048 1E-06 48.5 2.9 23 49-71 28-50 (210)
470 cd03225 ABC_cobalt_CbiO_domain 93.8 0.049 1.1E-06 48.4 2.9 24 48-71 28-51 (211)
471 cd03219 ABC_Mj1267_LivG_branch 93.8 0.045 9.8E-07 49.6 2.7 24 48-71 27-50 (236)
472 smart00072 GuKc Guanylate kina 93.8 0.056 1.2E-06 47.2 3.2 23 49-71 4-26 (184)
473 cd03258 ABC_MetN_methionine_tr 93.8 0.049 1.1E-06 49.3 2.9 26 47-72 31-56 (233)
474 COG1419 FlhF Flagellar GTP-bin 93.8 0.42 9.2E-06 46.7 9.4 21 47-67 203-223 (407)
475 TIGR00959 ffh signal recogniti 93.8 0.62 1.3E-05 46.4 10.8 22 47-68 99-120 (428)
476 cd03263 ABC_subfamily_A The AB 93.8 0.05 1.1E-06 48.8 2.9 24 49-72 30-53 (220)
477 cd03261 ABC_Org_Solvent_Resist 93.8 0.049 1.1E-06 49.4 2.9 24 48-71 27-50 (235)
478 cd03262 ABC_HisP_GlnQ_permease 93.8 0.05 1.1E-06 48.4 2.9 25 47-71 26-50 (213)
479 cd03259 ABC_Carb_Solutes_like 93.8 0.05 1.1E-06 48.5 2.9 24 48-71 27-50 (213)
480 COG4161 ArtP ABC-type arginine 93.7 0.061 1.3E-06 46.0 3.2 24 49-72 30-53 (242)
481 TIGR03608 L_ocin_972_ABC putat 93.7 0.052 1.1E-06 48.1 3.0 25 48-72 25-49 (206)
482 PF00625 Guanylate_kin: Guanyl 93.7 0.059 1.3E-06 47.0 3.3 20 50-69 5-24 (183)
483 PLN02674 adenylate kinase 93.7 0.11 2.4E-06 47.7 5.1 29 44-72 28-56 (244)
484 COG3840 ThiQ ABC-type thiamine 93.7 0.049 1.1E-06 47.5 2.6 22 48-69 26-47 (231)
485 PF00485 PRK: Phosphoribulokin 93.7 0.061 1.3E-06 47.4 3.4 23 50-72 2-24 (194)
486 cd03256 ABC_PhnC_transporter A 93.7 0.05 1.1E-06 49.4 2.9 25 47-71 27-51 (241)
487 PRK14526 adenylate kinase; Pro 93.7 0.06 1.3E-06 48.3 3.3 24 48-71 1-24 (211)
488 cd03266 ABC_NatA_sodium_export 93.7 0.051 1.1E-06 48.6 2.9 25 47-71 31-55 (218)
489 cd03301 ABC_MalK_N The N-termi 93.7 0.053 1.1E-06 48.3 2.9 25 47-71 26-50 (213)
490 cd03224 ABC_TM1139_LivF_branch 93.7 0.05 1.1E-06 48.8 2.8 25 47-71 26-50 (222)
491 cd03265 ABC_DrrA DrrA is the A 93.7 0.053 1.1E-06 48.7 2.9 24 48-71 27-50 (220)
492 PRK13947 shikimate kinase; Pro 93.7 0.062 1.4E-06 46.0 3.3 24 49-72 3-26 (171)
493 TIGR02211 LolD_lipo_ex lipopro 93.7 0.053 1.1E-06 48.6 2.9 25 47-71 31-55 (221)
494 COG0703 AroK Shikimate kinase 93.7 0.074 1.6E-06 46.0 3.6 28 48-75 3-30 (172)
495 cd03229 ABC_Class3 This class 93.6 0.056 1.2E-06 46.9 2.9 24 48-71 27-50 (178)
496 COG4615 PvdE ABC-type sideroph 93.6 0.068 1.5E-06 51.9 3.7 38 49-86 351-398 (546)
497 KOG0459 Polypeptide release fa 93.6 0.04 8.7E-07 53.3 2.1 50 165-220 141-190 (501)
498 PF05729 NACHT: NACHT domain 93.6 0.053 1.1E-06 45.6 2.7 61 203-266 72-132 (166)
499 PRK13540 cytochrome c biogenes 93.6 0.056 1.2E-06 47.8 3.0 26 46-71 26-51 (200)
500 cd03274 ABC_SMC4_euk Eukaryoti 93.6 0.06 1.3E-06 48.3 3.2 23 50-72 28-50 (212)
No 1
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-73 Score=529.75 Aligned_cols=319 Identities=46% Similarity=0.744 Sum_probs=292.8
Q ss_pred hcccccCCCCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018283 9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH 88 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~ 88 (358)
|||+|| .+.+++.++|++||++|+.++++.++.+|+||||+|+|||||++|||+++|.+||+.+|+..||+.||
T Consensus 1 MG~~~s------~e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~ 74 (354)
T KOG0082|consen 1 MGCICS------AEEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIY 74 (354)
T ss_pred CCcccC------chhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899887 23566777999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCC-CccCcHHHHHHHHHhhcCCCCC---------
Q 018283 89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD-YPRLTKELAEDIETLWADPAIQ--------- 158 (358)
Q Consensus 89 ~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lw~d~~i~--------- 158 (358)
.|+++++..|++|+..++++.. +|..+..+..+........ .+.++++++++|.+||+||+||
T Consensus 75 ~N~~~~~~~ll~a~~~~~i~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~ 147 (354)
T KOG0082|consen 75 SNIIQSLKALLRAMETLGINLD-------DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREF 147 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcC
Confidence 9999999999999998888754 5666666666654433333 3789999999999999999999
Q ss_pred -------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcE
Q 018283 159 -------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 213 (358)
Q Consensus 159 -------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~ 213 (358)
+|||++|.||+||.++.| ..++..+.++|+|||+++|++|.|||.++++
T Consensus 148 ~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F------~~k~~~f~~~DvGGQRseRrKWihcFe~v~a 221 (354)
T KOG0082|consen 148 QLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEVEF------TIKGLKFRMFDVGGQRSERKKWIHCFEDVTA 221 (354)
T ss_pred CCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEEEE------EeCCCceEEEeCCCcHHHhhhHHHhhcCCCE
Confidence 999999999999999999 8888999999999999999999999999999
Q ss_pred EEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcc
Q 018283 214 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ 293 (358)
Q Consensus 214 iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~ 293 (358)
||||+++|+|||++.|+...|||.+++.+|+++++++|+.+++|+||+||.|||+||+...|+. .|||+| .|.+
T Consensus 222 viF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~--~~Fpdy----~G~~ 295 (354)
T KOG0082|consen 222 VIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLT--DCFPDY----KGVN 295 (354)
T ss_pred EEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchh--hhCcCC----CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999777765 569999 5667
Q ss_pred cHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 294 EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 294 ~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
+.++|.+||..+|.+++++ ..+.+|+|+|||+|+.||+.||++|.+.|+..|++.+||+
T Consensus 296 ~~~~a~~yI~~kF~~l~~~------~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~gl~ 354 (354)
T KOG0082|consen 296 TYEEAAKYIRKKFEELNKN------KDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAGLI 354 (354)
T ss_pred ChHHHHHHHHHHHHHHhcc------cCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999753 2378999999999999999999999999999999999985
No 2
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-72 Score=489.77 Aligned_cols=321 Identities=36% Similarity=0.603 Sum_probs=299.1
Q ss_pred HhhcccccCCCCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018283 7 ENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISV 86 (358)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~ 86 (358)
+.|+|||- +.+++++++.+.+|+|+|.++++..++++|+||||+|+|||||++|||+++|+.|||++++..|++.
T Consensus 4 ~~~~~ccl-----see~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~l 78 (359)
T KOG0085|consen 4 LTWMCCCL-----SEEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKL 78 (359)
T ss_pred hhhhHhhC-----cHhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHH
Confidence 56788784 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC--------
Q 018283 87 IHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ-------- 158 (358)
Q Consensus 87 I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~-------- 158 (358)
||.|++.+|++++.||+.|.+++. .++++..+..+.+.+... ...|...++.+|++||.|||||
T Consensus 79 vyqnif~amqaMIrAMetL~I~y~-------~e~nk~~A~~vrevd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRRE 150 (359)
T KOG0085|consen 79 VYQNIFTAMQAMIRAMETLKIPYK-------REENKAHASLVREVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRRE 150 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-------cccchhhhhHhhhcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 999999999999999999999864 788999998888876654 4678899999999999999999
Q ss_pred --------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCc
Q 018283 159 --------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 212 (358)
Q Consensus 159 --------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~ 212 (358)
||+|++|+||+||.+++| +..++.|++.|+|||++.|++|.|||+++.
T Consensus 151 yqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypf------dl~~iifrmvDvGGqrserrKWIHCFEnvt 224 (359)
T KOG0085|consen 151 YQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPF------DLQKIIFRMVDVGGQRSERRKWIHCFENVT 224 (359)
T ss_pred hhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecCc------chhhheeeeeecCCchhhhhHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999
Q ss_pred EEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCc
Q 018283 213 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK 292 (358)
Q Consensus 213 ~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~ 292 (358)
+++|.+++|+|||++.++.+.|+++++..+|..++.-||+.+.++++++||.||+++|+..+++-++ ||.| .||
T Consensus 225 si~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~Y--FPe~----~GP 298 (359)
T KOG0085|consen 225 SIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADY--FPEF----DGP 298 (359)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHh--Cccc----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999987766544 6666 787
Q ss_pred -ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 293 -QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 293 -~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
.+...|.+||.+.|.+++ |+ .++.++.|+|||+|++||+.||.+|.++|++.+|++++|+
T Consensus 299 ~qDa~AAreFILkm~~d~n-----Pd-~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~NLv 359 (359)
T KOG0085|consen 299 KQDAQAAREFILKMYVDMN-----PD-SDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 359 (359)
T ss_pred cccHHHHHHHHHHHHHhhC-----CC-ccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhccC
Confidence 789999999999999984 32 4678999999999999999999999999999999999885
No 3
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=3.3e-62 Score=467.74 Aligned_cols=305 Identities=42% Similarity=0.650 Sum_probs=276.3
Q ss_pred HhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018283 28 AQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ 107 (358)
Q Consensus 28 ~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~ 107 (358)
++|++||++|++++++.++.+|+||||+|+||||||+|||+++|.+||+++|+..|++.|+.|++++|+.|+++++.+++
T Consensus 2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i 81 (342)
T smart00275 2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNI 81 (342)
T ss_pred cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccCcchHHHHHHHhhccC--CCCCccCcHHHHHHHHHhhcCCCCC---------------------------
Q 018283 108 NETDSMKFVVSSENKEIGEKLSEIGG--RLDYPRLTKELAEDIETLWADPAIQ--------------------------- 158 (358)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~lw~d~~i~--------------------------- 158 (358)
+.. ++++...+..+.+... ......+++++++.|..||+||+||
T Consensus 82 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~ 154 (342)
T smart00275 82 PFE-------DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD 154 (342)
T ss_pred CCC-------ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC
Confidence 643 3444455555655431 1112458999999999999999999
Q ss_pred -------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEcccccccccccc
Q 018283 159 -------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 231 (358)
Q Consensus 159 -------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~ 231 (358)
+|++++|.||+|+.+..| ..+++.+.+||+|||+.+|++|.+||.++++||||+|+|+||++++|+.
T Consensus 155 ~~y~Pt~~Dil~~r~~T~Gi~~~~f------~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~ 228 (342)
T smart00275 155 PDYVPTEQDILRSRVPTTGIQETAF------IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228 (342)
T ss_pred CCCCCCHHHhhheeCCccceEEEEE------EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC
Confidence 999999999999999999 8888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhh
Q 018283 232 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 311 (358)
Q Consensus 232 ~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~ 311 (358)
..+++.+++.+|+.+++++++.++|++|++||.|++.+|+...|++.+ ||+| +|+.+++++.+||.++|.++.+
T Consensus 229 ~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~--fp~y----~g~~~~~~~~~yi~~~F~~~~~ 302 (342)
T smart00275 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDY--FPDY----KGPNDYEAAAKFIKQKFLRLNR 302 (342)
T ss_pred cchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhcc--CCCC----CCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999888765 9999 5657899999999999999853
Q ss_pred hcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcC
Q 018283 312 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAG 356 (358)
Q Consensus 312 ~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~ 356 (358)
. ..+|.+|.|+|||+|+++++.+|+.|.+.|++.+++..|
T Consensus 303 ~-----~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l~~~~ 342 (342)
T smart00275 303 N-----SSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDAG 342 (342)
T ss_pred C-----CCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 124789999999999999999999999999999998875
No 4
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-62 Score=430.62 Aligned_cols=335 Identities=31% Similarity=0.516 Sum_probs=298.6
Q ss_pred hcccccCC-CCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018283 9 MGLLCSKN-RRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVI 87 (358)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I 87 (358)
||||.+.. .......+++.++|+.|+++|..++..++...|+||||+|+||||||+||||+||-+||+++|+..-.+-|
T Consensus 1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI 80 (379)
T KOG0099|consen 1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDI 80 (379)
T ss_pred CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHH
Confidence 78866442 22445567799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC---------
Q 018283 88 HANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ--------- 158 (358)
Q Consensus 88 ~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~--------- 158 (358)
+.|+.++|..|+.+|..+.++.. +.+|+++-.++.|.++.+.. ...+++|+.+.++.||+|.||+
T Consensus 81 ~~Ni~eai~~iv~aM~~l~p~v~-----l~~~~~~~~~dYIls~~~~~-~~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEy 154 (379)
T KOG0099|consen 81 KNNIKEAILTIVGAMSNLVPPVE-----LANPENQFRVDYILSVMNSP-DFDYPPEFYDHVKTLWEDEGVRACYERSNEY 154 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc-----cCCcccchhHHHHHhcCCCC-cccCCHHHHHHHHHHhhhhhHHHHHhccCcc
Confidence 99999999999999999986542 56899999999999988865 4578999999999999999998
Q ss_pred -------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcE
Q 018283 159 -------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 213 (358)
Q Consensus 159 -------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~ 213 (358)
+|||++|.-|+||.++.| ....++|+++|+|||+.+|++|..+|.++.+
T Consensus 155 qLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~F------qVdkv~FhMfDVGGQRDeRrKWIQcFndvtA 228 (379)
T KOG0099|consen 155 QLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTA 228 (379)
T ss_pred chhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEE------eccccceeeeccCCchhhhhhHHHHhcCccE
Confidence 999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccccccc---C--
Q 018283 214 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP---V-- 288 (358)
Q Consensus 214 iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~---~-- 288 (358)
||||++.|.|++++.|+++.|++.+++.+|+++.++.|+..+.+|||+||+|+..+|+....-+..++||+|.. +
T Consensus 229 iifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~d 308 (379)
T KOG0099|consen 229 IIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPED 308 (379)
T ss_pred EEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999987644333344776532 1
Q ss_pred ---CCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 289 ---STGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 289 ---~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
..|. ..+..|.-||...|+.+. ++....++.+|+|+|||+|++||+.||..+.+.|++.|++++||+
T Consensus 309 a~~es~~d~~v~raK~fird~FlRiS---ta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr~hlrqyeLl 379 (379)
T KOG0099|consen 309 ATPESGEDPRVTRAKYFIRDEFLRIS---TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379 (379)
T ss_pred cCCCCCCChhhHHHHHhhhhhHhhhc---cccCCCceecccceeEeechHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1122 457788889999999875 344556788999999999999999999999999999999999996
No 5
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=3.1e-59 Score=443.96 Aligned_cols=282 Identities=46% Similarity=0.716 Sum_probs=261.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK 127 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 127 (358)
+|+||||+|+||||||+|||+++|++||+++|+..|+++|+.|++++|+.|+++++.++++. .+|++...+..
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~-------~~~~~~~~~~~ 73 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPF-------GDPENEKDAKK 73 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999763 35677777777
Q ss_pred HhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeeccCceee
Q 018283 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRTTGVVE 173 (358)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T~gi~e 173 (358)
+...........+++++++.|.+||+||+|| +|+|++|.||+|+.+
T Consensus 74 i~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~ 153 (317)
T cd00066 74 ILSFAPELEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVE 153 (317)
T ss_pred HHhccccccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeE
Confidence 7776655445679999999999999999999 999999999999999
Q ss_pred EeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 174 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 174 ~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
..| ..+++.+.+||+|||+.+|++|.+||.++++||||+|+|+||+.++++...+++.+++..|+++++++++.
T Consensus 154 ~~f------~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 154 TKF------TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred EEE------EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 999 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCC-cccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG-KQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g-~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
++|++|++||.|++++|+...|++.| ||+| +| +.+++++.+||..+|.++.+. ..|.+++|+|||+|
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~--fp~y----~g~~~~~~~~~~~i~~~F~~~~~~------~~~~~~~~~t~a~D 295 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDY--FPDY----TGPPNDYEEAAKFIRKKFLDLNRN------PNKEIYPHFTCATD 295 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCcccc--CCCC----CCCCCCHHHHHHHHHHHHHHhhcC------CCCeEEEEeccccc
Confidence 99999999999999999999999877 9999 56 578999999999999998632 24789999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 018283 333 PKLVKKTFKLVDETLRRRHLFE 354 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~~~~~~~ 354 (358)
+++|+.+|+.|.+.|+..++++
T Consensus 296 t~~i~~vf~~v~~~i~~~~l~~ 317 (317)
T cd00066 296 TENIRFVFDAVKDIILQNNLKD 317 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998763
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=1.9e-58 Score=451.41 Aligned_cols=311 Identities=43% Similarity=0.736 Sum_probs=269.7
Q ss_pred hhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018283 21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYD 100 (358)
Q Consensus 21 ~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~ 100 (358)
++++++.+++++|+++++.+++..++.+||||||+|+||||||+|||+++|+++|+++|+..|++.|+.|++++|+.|++
T Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~ 111 (389)
T PF00503_consen 32 EEEKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILE 111 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHH
Confidence 34566888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccccccCcchHHHHHHHhhccCCCCCc---------cCcHHHHHHHHHhhcCCCCC-------------
Q 018283 101 GSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP---------RLTKELAEDIETLWADPAIQ------------- 158 (358)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~lw~d~~i~------------- 158 (358)
++..++++.........++++....+.+.......+.. .+++++++.|..||+||+||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d 191 (389)
T PF00503_consen 112 ALEELGIPFSFSESSQLNEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPD 191 (389)
T ss_dssp HHHHTTCH-SSS-TT--STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--T
T ss_pred HHHHcCCCccccccccCCHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccc
Confidence 99999987543222333577777777777765554332 47899999999999999999
Q ss_pred ---------------------cceeeeeeccCceeeEeeccCCCCcc-cceEEEEEecCCCchhhhhHhhhhcCCcEEEE
Q 018283 159 ---------------------DDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 216 (358)
Q Consensus 159 ---------------------~Dil~~~~~T~gi~e~~~~~~~~~~~-~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIf 216 (358)
+|||++|.+|+||.++.| .. ++..+.++|+|||+.+|++|.+||.++++|||
T Consensus 192 ~~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f------~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif 265 (389)
T PF00503_consen 192 NAKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDF------NFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIF 265 (389)
T ss_dssp THHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEE------EE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEE
T ss_pred cHHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEE------EeecccccceecCCCCchhhhhHHHHhccccEEEE
Confidence 899999999999999999 87 99999999999999999999999999999999
Q ss_pred EEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCC-CcccccccccccCCCCc--c
Q 018283 217 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP-LNVCEWFKDYQPVSTGK--Q 293 (358)
Q Consensus 217 v~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~-l~~~~~f~~y~~~~~g~--~ 293 (358)
|+|+|+||++++|+...|++.+++.+|+++++++++.++|++||+||.|++++|+...+ +..+ ||+| +|+ .
T Consensus 266 ~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~--fp~y----~g~~~~ 339 (389)
T PF00503_consen 266 VVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKY--FPDY----TGDRPN 339 (389)
T ss_dssp EEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGT--STTG----GSH-TS
T ss_pred eecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhh--CCCC----CCCccc
Confidence 99999999999999999999999999999999999999999999999999999999988 6655 8888 575 6
Q ss_pred cHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 294 EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 294 ~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
+++.+.+||.++|.+..+.... .+.+++|+|||+|+++|+.+|+.|.+.|
T Consensus 340 ~~~~~~~~i~~~f~~~~~~~~~----~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 340 DVDSAIKFIKNKFLRLNRNNSP----SRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp SHHHHHHHHHHHHHCTHSTTTT----CS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCC----CcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 8999999999999998753321 1789999999999999999999999876
No 7
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-29 Score=213.86 Aligned_cols=136 Identities=23% Similarity=0.272 Sum_probs=105.7
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.|+....-+..- +++.++++||||+||++||....+||++|++||||+|+ ++..+|.....|+.+
T Consensus 39 ~sTIGVDf~~rt~e~--~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDi----------T~~~SF~~v~~Wi~E 106 (205)
T KOG0084|consen 39 ISTIGVDFKIRTVEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDI----------TKQESFNNVKRWIQE 106 (205)
T ss_pred cceeeeEEEEEEeee--cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEc----------ccHHHhhhHHHHHHH
Confidence 456676542221111 78899999999999999999999999999999999999 567788888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE-
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK- 324 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~- 324 (358)
+-.. ...++|.+|||||+|+.+.+. ...++|..| .. ...+.
T Consensus 107 i~~~-~~~~v~~lLVGNK~Dl~~~~~---------------------v~~~~a~~f-----a~-----------~~~~~~ 148 (205)
T KOG0084|consen 107 IDRY-ASENVPKLLVGNKCDLTEKRV---------------------VSTEEAQEF-----AD-----------ELGIPI 148 (205)
T ss_pred hhhh-ccCCCCeEEEeeccccHhhee---------------------cCHHHHHHH-----HH-----------hcCCcc
Confidence 7553 456789999999999988765 234556444 21 12344
Q ss_pred EEEeeccChhhHHHHHHHHHHHHHHhh
Q 018283 325 IYRTTALDPKLVKKTFKLVDETLRRRH 351 (358)
Q Consensus 325 ~~~tSA~d~~ni~~vf~~i~~~i~~~~ 351 (358)
+++||||++.||+++|..+...++...
T Consensus 149 f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 149 FLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred eeecccCCccCHHHHHHHHHHHHHHhc
Confidence 889999999999999999999987653
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.4e-27 Score=199.63 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=101.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....++|.|||||||++|+.+-+.|||+|+++|.|||+ ++..+|..+..|++++-.. ..+++-|.|+||
T Consensus 50 ~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDi----------t~~~SF~~aK~WvkeL~~~-~~~~~vialvGN 118 (200)
T KOG0092|consen 50 DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDI----------TDEESFEKAKNWVKELQRQ-ASPNIVIALVGN 118 (200)
T ss_pred CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEec----------ccHHHHHHHHHHHHHHHhh-CCCCeEEEEecc
Confidence 44579999999999999999999999999999999999 6789999999999998554 347888999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||.+.|. ...++|..|-. .....+++||||++.||.++|..
T Consensus 119 K~DL~~~R~---------------------V~~~ea~~yAe----------------~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 119 KADLLERRE---------------------VEFEEAQAYAE----------------SQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred hhhhhhccc---------------------ccHHHHHHHHH----------------hcCCEEEEEecccccCHHHHHHH
Confidence 999987543 44566766622 23478899999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
|.+.+....
T Consensus 162 Ia~~lp~~~ 170 (200)
T KOG0092|consen 162 IAEKLPCSD 170 (200)
T ss_pred HHHhccCcc
Confidence 999987543
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=1e-25 Score=196.74 Aligned_cols=134 Identities=22% Similarity=0.377 Sum_probs=109.6
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
..||.|+....+ ...++.+.+||+||+..+|+.|.+||++++++|||+|. ++.+++.++.+.+.
T Consensus 42 ~~pT~g~~~~~i------~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs----------sd~~~l~e~~~~L~ 105 (175)
T PF00025_consen 42 TIPTIGFNIEEI------KYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS----------SDPERLQEAKEELK 105 (175)
T ss_dssp EEEESSEEEEEE------EETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET----------TGGGGHHHHHHHHH
T ss_pred cCccccccccee------eeCcEEEEEEeccccccccccceeeccccceeEEEEec----------ccceeecccccchh
Confidence 369999998888 77889999999999999999999999999999999997 45678999999999
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 324 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~ 324 (358)
.+++++...++|+++++||+|+.+. ...++....+.-. .+ . .++.+.
T Consensus 106 ~ll~~~~~~~~piLIl~NK~D~~~~-----------------------~~~~~i~~~l~l~--~l-----~---~~~~~~ 152 (175)
T PF00025_consen 106 ELLNDPELKDIPILILANKQDLPDA-----------------------MSEEEIKEYLGLE--KL-----K---NKRPWS 152 (175)
T ss_dssp HHHTSGGGTTSEEEEEEESTTSTTS-----------------------STHHHHHHHTTGG--GT-----T---SSSCEE
T ss_pred hhcchhhcccceEEEEeccccccCc-----------------------chhhHHHhhhhhh--hc-----c---cCCceE
Confidence 9999888889999999999998643 1112222211100 00 0 256789
Q ss_pred EEEeeccChhhHHHHHHHHHHHH
Q 018283 325 IYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 325 ~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
++.+||++|+|+.++|+|+.+.|
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhcC
Confidence 99999999999999999999876
No 10
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=7.9e-26 Score=198.54 Aligned_cols=135 Identities=19% Similarity=0.336 Sum_probs=104.0
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ +...+.+++||++||+.++.+|.+||++++++|||+|++ +..++.++..++..
T Consensus 46 ~pt~g~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s----------~~~s~~~~~~~l~~ 109 (181)
T PLN00223 46 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHR 109 (181)
T ss_pred cCCcceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence 36777766556 667899999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+++....+++|++|++||+|+.++. ..++..+.+ .+ +....+.+++
T Consensus 110 ~l~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~l-----~l------~~~~~~~~~~ 155 (181)
T PLN00223 110 MLNEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITDKL-----GL------HSLRQRHWYI 155 (181)
T ss_pred HhcCHhhCCCCEEEEEECCCCCCCC-----------------------CHHHHHHHh-----Cc------cccCCCceEE
Confidence 8877666789999999999985431 112211111 11 0002356777
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
+.|||++|+||.++|+++.+.+.++
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999988764
No 11
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-26 Score=198.84 Aligned_cols=120 Identities=14% Similarity=0.215 Sum_probs=98.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++..+.+++|||+||++||.+...||++|.++++|||+ ++..+++....|++.+-.+ ...++|++||||
T Consensus 57 ~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDi----------tne~Sfeni~~W~~~I~e~-a~~~v~~~LvGN 125 (207)
T KOG0078|consen 57 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDI----------TNEKSFENIRNWIKNIDEH-ASDDVVKILVGN 125 (207)
T ss_pred CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEc----------cchHHHHHHHHHHHHHHhh-CCCCCcEEEeec
Confidence 77889999999999999999999999999999999999 5667888888877777554 345899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+|. ...+++.++.. +..+.+++|||+++.||.++|..
T Consensus 126 K~D~~~~R~---------------------V~~e~ge~lA~----------------e~G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 126 KCDLEEKRQ---------------------VSKERGEALAR----------------EYGIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred ccccccccc---------------------ccHHHHHHHHH----------------HhCCeEEEccccCCCCHHHHHHH
Confidence 999987553 22344443311 23488999999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+++.|+++
T Consensus 169 La~~i~~k 176 (207)
T KOG0078|consen 169 LARDILQK 176 (207)
T ss_pred HHHHHHhh
Confidence 99999864
No 12
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.2e-26 Score=195.83 Aligned_cols=125 Identities=22% Similarity=0.417 Sum_probs=113.0
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|++...+ ..++++|++||+|||+++|+.|.+||++++++|||+|. +++.|+.++.+.+..
T Consensus 46 vPTiGfnVE~v------~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS----------~Dr~Ri~eak~eL~~ 109 (181)
T KOG0070|consen 46 VPTIGFNVETV------EYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDS----------SDRERIEEAKEELHR 109 (181)
T ss_pred CCccccceeEE------EEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeC----------CcHHHHHHHHHHHHH
Confidence 69999998888 88899999999999999999999999999999999995 789999999999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhh--------hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHH
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE 307 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~e--------ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~ 307 (358)
+++++.+.++|+++++||+|+..+ ++.-..+..++|+.+-+++.+| +++.++.+|+.+...
T Consensus 110 ~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G-~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 110 MLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISG-EGLYEGLDWLSNNLK 178 (181)
T ss_pred HHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccc-ccHHHHHHHHHHHHh
Confidence 999998899999999999998754 3334567778999999999999 999999999887653
No 13
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=2e-25 Score=185.26 Aligned_cols=136 Identities=22% Similarity=0.355 Sum_probs=110.1
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+..... ..+.+++++||+|||...|+.|.+||.+++++|||||. .+..+|+++...+.+
T Consensus 45 ~pt~gf~Iktl------~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDs----------sD~~r~~e~~~~L~~ 108 (185)
T KOG0073|consen 45 SPTLGFQIKTL------EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDS----------SDRMRMQECKQELTE 108 (185)
T ss_pred CCccceeeEEE------EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEEC----------chHHHHHHHHHHHHH
Confidence 58888877777 77899999999999999999999999999999999997 578999999999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++.......+|++|++||+|+..+ +.. ..+..+.+. .++. +.+.+..
T Consensus 109 lL~eerlaG~~~Lvlank~dl~~~-l~~-------------------~~i~~~~~L-----~~l~--------ks~~~~l 155 (185)
T KOG0073|consen 109 LLVEERLAGAPLLVLANKQDLPGA-LSL-------------------EEISKALDL-----EELA--------KSHHWRL 155 (185)
T ss_pred HHhhhhhcCCceEEEEecCcCccc-cCH-------------------HHHHHhhCH-----HHhc--------cccCceE
Confidence 998888889999999999999633 100 112222110 1111 2456788
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
.-+||.+|+++.+.|+|+.+.+..+
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EEEeccccccHHHHHHHHHHHHHHH
Confidence 8899999999999999999999874
No 14
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.5e-26 Score=182.68 Aligned_cols=123 Identities=16% Similarity=0.374 Sum_probs=110.8
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||+|++...+ ..+++.|++||+|||.+.|++|.|||.+..++|||+|. .+.++++++.+.+.+
T Consensus 46 ipTvGFnvetV------tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Ds----------a~~dr~eeAr~ELh~ 109 (180)
T KOG0071|consen 46 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIEEARNELHR 109 (180)
T ss_pred ccccceeEEEE------EeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEec----------cchhhHHHHHHHHHH
Confidence 58999998888 88999999999999999999999999999999999996 567999999999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhh--------hccCCCcccccccccccCCCCcccHHHHHHHHHHH
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKK--------VLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 305 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~ek--------i~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 305 (358)
+++++...++|+++++||+|+..++ +.-.+++...|.-+.+++.+| +++.++..|+.+.
T Consensus 110 ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~g-dgL~eglswlsnn 176 (180)
T KOG0071|consen 110 IINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSG-DGLKEGLSWLSNN 176 (180)
T ss_pred HhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccc-hhHHHHHHHHHhh
Confidence 9999999999999999999998763 222468889999999888888 8999999998764
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=189.79 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=100.5
Q ss_pred eeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 172 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 172 ~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
+++.+ +.+.++++|||||||++|+++--.+|+++|++++|+|+.. ..+.+.+..|.+.|-.-.+-..
T Consensus 49 Kev~V------d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~-------~~Sfe~L~~Wr~EFl~qa~~~~ 115 (210)
T KOG0394|consen 49 KEVQV------DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN-------PKSFENLENWRKEFLIQASPQD 115 (210)
T ss_pred eEEEE------cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC-------hhhhccHHHHHHHHHHhcCCCC
Confidence 45666 7888999999999999999999999999999999999831 2334555555555543322222
Q ss_pred CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 331 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~ 331 (358)
...-|+||+|||.|+...+-.. ..-..|..|... ++.+.+|+||||
T Consensus 116 Pe~FPFVilGNKiD~~~~~~r~-------------------VS~~~Aq~WC~s---------------~gnipyfEtSAK 161 (210)
T KOG0394|consen 116 PETFPFVILGNKIDVDGGKSRQ-------------------VSEKKAQTWCKS---------------KGNIPYFETSAK 161 (210)
T ss_pred CCcccEEEEcccccCCCCccce-------------------eeHHHHHHHHHh---------------cCCceeEEeccc
Confidence 2356999999999996532111 445778888553 346889999999
Q ss_pred ChhhHHHHHHHHHHHHHHhh
Q 018283 332 DPKLVKKTFKLVDETLRRRH 351 (358)
Q Consensus 332 d~~ni~~vf~~i~~~i~~~~ 351 (358)
+..||.++|+.+....+...
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccccHHHHHHHHHHHHHhcc
Confidence 99999999999999988754
No 16
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-25 Score=181.87 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=100.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
.++.++++||||+||++||+....||+++.+.++|+|+ ++++++++.-.|+..+.. ...+++.|+|++|
T Consensus 54 GgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~----------TsrdsfnaLtnWL~DaR~-lAs~nIvviL~Gn 122 (214)
T KOG0086|consen 54 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRDSFNALTNWLTDART-LASPNIVVILCGN 122 (214)
T ss_pred cCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEec----------cchhhHHHHHHHHHHHHh-hCCCcEEEEEeCC
Confidence 67889999999999999999999999999999999998 577777777777766633 3456889999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.||..++- ....+|..|. .++.+-+++|||++|+||++.|-.
T Consensus 123 KkDL~~~R~---------------------VtflEAs~Fa----------------qEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 123 KKDLDPERE---------------------VTFLEASRFA----------------QENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred hhhcChhhh---------------------hhHHHHHhhh----------------cccceeeeeecccccccHHHHHHH
Confidence 999977653 3456666662 245678899999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
++.+|+.+
T Consensus 166 c~~tIl~k 173 (214)
T KOG0086|consen 166 CARTILNK 173 (214)
T ss_pred HHHHHHHH
Confidence 99999865
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.93 E-value=3.5e-25 Score=197.62 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=91.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++|||+||++++.+|..||++++++|+|||+ ++..++.+...|+..+ +.....++|++||+|
T Consensus 45 ~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDv----------td~~Sf~~l~~w~~~i-~~~~~~~~piilVgN 113 (202)
T cd04120 45 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI----------TKKETFDDLPKWMKMI-DKYASEDAELLLVGN 113 (202)
T ss_pred CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEE
Confidence 55679999999999999999999999999999999998 4667777777766654 333345799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||.+++. ....++.+|..+ ...+.+++|||++|+||.++|.+
T Consensus 114 K~DL~~~~~---------------------v~~~~~~~~a~~---------------~~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 114 KLDCETDRE---------------------ISRQQGEKFAQQ---------------ITGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred Ccccccccc---------------------cCHHHHHHHHHh---------------cCCCEEEEecCCCCCCHHHHHHH
Confidence 999964321 112333333110 01256789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 158 l~~~~~~~ 165 (202)
T cd04120 158 LVDDILKK 165 (202)
T ss_pred HHHHHHHh
Confidence 99988653
No 18
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.8e-25 Score=187.29 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=106.6
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|+|+.....+..- ....++|++|||+|||+||.+.+.|+++++++|.|+|+ ++.++|+...+|++.
T Consensus 52 qATIGiDFlskt~~l--~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDi----------t~~~Sfe~t~kWi~d 119 (221)
T KOG0094|consen 52 QATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDI----------TDRNSFENTSKWIED 119 (221)
T ss_pred cceeeeEEEEEEEEE--cCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEec----------cccchHHHHHHHHHH
Confidence 578888764332211 56789999999999999999999999999999999999 688999999999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.+.....++-|+|||||.||.+++-. ..+++-. +-. +....+
T Consensus 120 v~~e~gs~~viI~LVGnKtDL~dkrqv---------------------s~eEg~~----kAk------------el~a~f 162 (221)
T KOG0094|consen 120 VRRERGSDDVIIFLVGNKTDLSDKRQV---------------------SIEEGER----KAK------------ELNAEF 162 (221)
T ss_pred HHhccCCCceEEEEEcccccccchhhh---------------------hHHHHHH----HHH------------HhCcEE
Confidence 988777667899999999999876431 1122221 001 123567
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
.+|||+.|.||+.+|..|...+...
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhccCc
Confidence 8899999999999999988776543
No 19
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.93 E-value=6.3e-25 Score=194.05 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=96.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++|||+||+.++.+|..||++++++|+|+|+ ++..++.+...|+..+... .+++|++||||
T Consensus 51 ~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~----------t~~~Sf~~~~~w~~~i~~~--~~~~piilVGN 118 (189)
T cd04121 51 DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDI----------TNRWSFDGIDRWIKEIDEH--APGVPKILVGN 118 (189)
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 55678999999999999999999999999999999998 5678888888888887543 35799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.||...+. ...+++..|.. ...+.+++|||+++.||+++|++
T Consensus 119 K~DL~~~~~---------------------v~~~~~~~~a~----------------~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 119 RLHLAFKRQ---------------------VATEQAQAYAE----------------RNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred CccchhccC---------------------CCHHHHHHHHH----------------HcCCEEEEecCCCCCCHHHHHHH
Confidence 999964321 22445555532 12367899999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+++.++..
T Consensus 162 l~~~i~~~ 169 (189)
T cd04121 162 LARIVLMR 169 (189)
T ss_pred HHHHHHHh
Confidence 99988753
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.7e-25 Score=184.95 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=94.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHH---HHHHHHHHHcCCCCCCCcEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME---TKELFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~---~~~~~~~i~~~~~~~~~~iil 259 (358)
+++.+++.||||+||++||.+.+.||+++.++|.|+|++ .++.|.. |+..++....+ +++-.+|
T Consensus 56 dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT----------~Rdtf~kLd~W~~Eld~Ystn---~diikml 122 (209)
T KOG0080|consen 56 DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVT----------SRDTFVKLDIWLKELDLYSTN---PDIIKML 122 (209)
T ss_pred cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEcc----------chhhHHhHHHHHHHHHhhcCC---ccHhHhh
Confidence 888999999999999999999999999999999999994 4555444 44444444443 4678899
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
|+||.|-..+|. .+.+++++|-+ ++.+-++++||++.+||+.+
T Consensus 123 VgNKiDkes~R~---------------------V~reEG~kfAr----------------~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 123 VGNKIDKESERV---------------------VDREEGLKFAR----------------KHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred hcccccchhccc---------------------ccHHHHHHHHH----------------hhCcEEEEcchhhhccHHHH
Confidence 999999755543 55688888722 34578899999999999999
Q ss_pred HHHHHHHHHH
Q 018283 340 FKLVDETLRR 349 (358)
Q Consensus 340 f~~i~~~i~~ 349 (358)
|++++..|++
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 21
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=8e-25 Score=189.76 Aligned_cols=129 Identities=18% Similarity=0.311 Sum_probs=97.3
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
||+|+....+ ....+.+++|||+|+++++..|..||++++++|||+|++ +..++.++..++..+
T Consensus 39 ~t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t----------~~~s~~~~~~~~~~~ 102 (168)
T cd04149 39 PTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA----------DRDRIDEARQELHRI 102 (168)
T ss_pred CCcccceEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC----------chhhHHHHHHHHHHH
Confidence 5666554444 456789999999999999999999999999999999984 456788888999888
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
++.....++|++|++||+|+.+. ...+++.+++... . . ..+.+.++
T Consensus 103 ~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~i~~~~~~~--~------~---~~~~~~~~ 148 (168)
T cd04149 103 INDREMRDALLLVFANKQDLPDA-----------------------MKPHEIQEKLGLT--R------I---RDRNWYVQ 148 (168)
T ss_pred hcCHhhcCCcEEEEEECcCCccC-----------------------CCHHHHHHHcCCC--c------c---CCCcEEEE
Confidence 87655668999999999998532 1122333321100 0 0 12446788
Q ss_pred EeeccChhhHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~ 345 (358)
+|||++++||.++|+++.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999865
No 22
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.6e-25 Score=185.92 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=106.5
Q ss_pred CceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc
Q 018283 169 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248 (358)
Q Consensus 169 ~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~ 248 (358)
.|...+.+ +.+.++++||||+||++||+....||+++.++|+|+|+ +.+++|...-.|+..+.+
T Consensus 43 fg~r~~~i------d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydi----------t~r~sF~hL~~wL~D~rq 106 (216)
T KOG0098|consen 43 FGARMVTI------DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDI----------TRRESFNHLTSWLEDARQ 106 (216)
T ss_pred eceeEEEE------cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEc----------cchhhHHHHHHHHHHHHH
Confidence 34556777 89999999999999999999999999999999999999 567788887888888866
Q ss_pred CCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEe
Q 018283 249 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT 328 (358)
Q Consensus 249 ~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~t 328 (358)
+. .+|..|+|++||+||...|. .+-+|+-.|-+ .+.+-+.+|
T Consensus 107 ~~-~~NmvImLiGNKsDL~~rR~---------------------Vs~EEGeaFA~----------------ehgLifmET 148 (216)
T KOG0098|consen 107 HS-NENMVIMLIGNKSDLEARRE---------------------VSKEEGEAFAR----------------EHGLIFMET 148 (216)
T ss_pred hc-CCCcEEEEEcchhhhhcccc---------------------ccHHHHHHHHH----------------HcCceeehh
Confidence 53 46899999999999976542 44566666633 234667799
Q ss_pred eccChhhHHHHHHHHHHHHHHhh
Q 018283 329 TALDPKLVKKTFKLVDETLRRRH 351 (358)
Q Consensus 329 SA~d~~ni~~vf~~i~~~i~~~~ 351 (358)
||++++||+++|......|+++.
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 23
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=1.4e-24 Score=189.36 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=99.0
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
||+|+....+ ....+.+.+||++|++.++.+|..||++++++|||+|++ +..++.++.+++..+
T Consensus 43 ~t~~~~~~~~------~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t----------~~~s~~~~~~~l~~~ 106 (175)
T smart00177 43 PTIGFNVETV------TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN----------DRDRIDEAREELHRM 106 (175)
T ss_pred CccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence 5666554444 456789999999999999999999999999999999984 556788899999998
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
++.....++|++|++||+|+.+.. ..++.... +. + ... ..+.++++
T Consensus 107 ~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~----~~-~---~~~---~~~~~~~~ 152 (175)
T smart00177 107 LNEDELRDAVILVFANKQDLPDAM-----------------------KAAEITEK----LG-L---HSI---RDRNWYIQ 152 (175)
T ss_pred hhCHhhcCCcEEEEEeCcCcccCC-----------------------CHHHHHHH----hC-c---ccc---CCCcEEEE
Confidence 876555679999999999985421 01111111 00 0 001 24567778
Q ss_pred EeeccChhhHHHHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
.|||++|+||.++|+++.+.+.
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999987753
No 24
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2.1e-24 Score=189.66 Aligned_cols=134 Identities=17% Similarity=0.316 Sum_probs=99.8
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
||.|.....+ +...+.+++||++|+++++..|..||++++++|||+|++ +.+++.++..++..+
T Consensus 47 ~T~~~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t----------~~~s~~~~~~~l~~~ 110 (182)
T PTZ00133 47 PTIGFNVETV------EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN----------DRERIGDAREELERM 110 (182)
T ss_pred CccccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHH
Confidence 5556554444 556789999999999999999999999999999999984 566788888888888
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
+......++|++|++||.|+.+.. ..++....+... .. ..+.++++
T Consensus 111 ~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~l~~~--------~~---~~~~~~~~ 156 (182)
T PTZ00133 111 LSEDELRDAVLLVFANKQDLPNAM-----------------------STTEVTEKLGLH--------SV---RQRNWYIQ 156 (182)
T ss_pred HhCHhhcCCCEEEEEeCCCCCCCC-----------------------CHHHHHHHhCCC--------cc---cCCcEEEE
Confidence 776556678999999999985421 111111111000 00 13456777
Q ss_pred EeeccChhhHHHHHHHHHHHHHHh
Q 018283 327 RTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
.|||++++|++++|+++.+.+.++
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999887653
No 25
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=3e-24 Score=184.33 Aligned_cols=129 Identities=21% Similarity=0.343 Sum_probs=95.9
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
||.|.....+ ....+.+.+||++||++++..|..||++++++|||+|++ +..++.++.+++..+
T Consensus 30 pt~g~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~----------~~~s~~~~~~~~~~~ 93 (159)
T cd04150 30 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERIGEAREELQRM 93 (159)
T ss_pred CCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHH
Confidence 5666554444 556789999999999999999999999999999999984 566788888889888
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
+..+...++|++|++||+|+.... ..++... ++ .+ +.. ..+.+.++
T Consensus 94 ~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~----~~-~~---~~~---~~~~~~~~ 139 (159)
T cd04150 94 LNEDELRDAVLLVFANKQDLPNAM-----------------------SAAEVTD----KL-GL---HSL---RNRNWYIQ 139 (159)
T ss_pred HhcHHhcCCCEEEEEECCCCCCCC-----------------------CHHHHHH----Hh-Cc---ccc---CCCCEEEE
Confidence 776556678999999999985320 0111111 11 00 000 13456778
Q ss_pred EeeccChhhHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~ 345 (358)
.+||++|+||+++|+++.+
T Consensus 140 ~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 140 ATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EeeCCCCCCHHHHHHHHhc
Confidence 8999999999999999864
No 26
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=1e-23 Score=182.69 Aligned_cols=136 Identities=20% Similarity=0.328 Sum_probs=102.9
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|.....+ +...+.+.+||++|++.++..|..||++++++|||+|++ +.+++.++..++..
T Consensus 28 ~~T~~~~~~~~------~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s----------~~~s~~~~~~~~~~ 91 (169)
T cd04158 28 IPTIGFNVETV------EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS----------HRDRVSEAHSELAK 91 (169)
T ss_pred CCcCceeEEEE------EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence 46666665555 567899999999999999999999999999999999984 56788888899999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.+.....+.|++|++||+|+.++ .+.+++.+++. +... . ..+.+.+
T Consensus 92 ~~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~~~~~~~--~~~~-----~---~~~~~~~ 138 (169)
T cd04158 92 LLTEKELRDALLLIFANKQDVAGA-----------------------LSVEEMTELLS--LHKL-----C---CGRSWYI 138 (169)
T ss_pred HhcChhhCCCCEEEEEeCcCcccC-----------------------CCHHHHHHHhC--Cccc-----c---CCCcEEE
Confidence 887655567899999999998532 12233333320 1000 0 1234677
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
++|||+++.||+++|+++.+.+...
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 8899999999999999998877643
No 27
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=177.05 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=105.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++..++++|||++||++||.+...||++.+++|.|+|+ ++.++|.....|++++-++. +..|-+||||
T Consensus 53 ~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDV----------Tn~ESF~Nv~rWLeei~~nc--dsv~~vLVGN 120 (198)
T KOG0079|consen 53 NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFNNVKRWLEEIRNNC--DSVPKVLVGN 120 (198)
T ss_pred CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEEC----------cchhhhHhHHHHHHHHHhcC--ccccceeccc
Confidence 78899999999999999999999999999999999998 67899999999999997763 3689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+.|. .+.++|..|-.. -.+.+|+|||++.+|++..|..
T Consensus 121 K~d~~~Rrv---------------------V~t~dAr~~A~~----------------mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 121 KNDDPERRV---------------------VDTEDARAFALQ----------------MGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred CCCCcccee---------------------eehHHHHHHHHh----------------cCchheehhhhhcccchHHHHH
Confidence 999987765 345667776322 3477899999999999999999
Q ss_pred HHHHHHHhhhh
Q 018283 343 VDETLRRRHLF 353 (358)
Q Consensus 343 i~~~i~~~~~~ 353 (358)
|.+..++..+.
T Consensus 164 it~qvl~~k~r 174 (198)
T KOG0079|consen 164 ITKQVLQAKLR 174 (198)
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 28
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.91 E-value=8.6e-24 Score=183.97 Aligned_cols=121 Identities=15% Similarity=0.248 Sum_probs=92.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++||++|++.++.+|..||++++++|+|+|+ ++..++.....|+..+.......++|++||+|
T Consensus 46 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~----------~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN 115 (172)
T cd04141 46 DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSV----------TDRHSFQEASEFKKLITRVRLTEDIPLVLVGN 115 (172)
T ss_pred CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEEC----------CchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 55678899999999999999999999999999999998 45667777666555543322235789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+.+. ...+++.++.. +..+.+++|||+++.||+++|++
T Consensus 116 K~Dl~~~~~---------------------v~~~~~~~~a~----------------~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 116 KVDLESQRQ---------------------VTTEEGRNLAR----------------EFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ChhhhhcCc---------------------cCHHHHHHHHH----------------HhCCEEEEEecCCCCCHHHHHHH
Confidence 999865321 12334443311 12367889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99988764
No 29
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.3e-24 Score=184.75 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=107.7
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+.....++.. +.+.++.+||||+||++||.....||+++.++++|+|+ +....++....|+++
T Consensus 44 ksTIGvef~t~t~~v--d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDI----------Tr~~Tfenv~rWL~E 111 (222)
T KOG0087|consen 44 KSTIGVEFATRTVNV--DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI----------TRRQTFENVERWLKE 111 (222)
T ss_pred ccceeEEEEeeceee--cCcEEEEeeecccchhhhccccchhhcccceeEEEEec----------hhHHHHHHHHHHHHH
Confidence 356777654433222 78899999999999999999999999999999999999 567778888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+..+ ..++++|+|+|||+||-.-|. ...+++..|- ....+++
T Consensus 112 LRdh-ad~nivimLvGNK~DL~~lra---------------------V~te~~k~~A----------------e~~~l~f 153 (222)
T KOG0087|consen 112 LRDH-ADSNIVIMLVGNKSDLNHLRA---------------------VPTEDGKAFA----------------EKEGLFF 153 (222)
T ss_pred HHhc-CCCCeEEEEeecchhhhhccc---------------------cchhhhHhHH----------------HhcCceE
Confidence 8665 446899999999999965332 2234444431 1234789
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHhhhh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRRHLF 353 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~~~~ 353 (358)
++|||++..|++.+|..+...|.+..-+
T Consensus 154 ~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 154 LETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred EEecccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876544
No 30
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.91 E-value=1.9e-23 Score=184.95 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=92.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+++|||+||++++.+|..||++++++|+|||+ ++..++++... |...+... .+++|++||+
T Consensus 47 ~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvg 114 (191)
T cd01875 47 DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSI----------ASPSSYENVRHKWHPEVCHH--CPNVPILLVG 114 (191)
T ss_pred CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEE
Confidence 56678999999999999999999999999999999998 45677777754 55555432 3579999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||.||.+.+-....+. +. .......+++.+|.. + ...+.+++|||++++||+++|.
T Consensus 115 NK~DL~~~~~~~~~~~------~~---~~~~v~~~~~~~~a~-~--------------~~~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 115 TKKDLRNDADTLKKLK------EQ---GQAPITPQQGGALAK-Q--------------IHAVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred eChhhhcChhhHHHHh------hc---cCCCCCHHHHHHHHH-H--------------cCCcEEEEeCCCCCCCHHHHHH
Confidence 9999965421000000 00 000123344444411 0 1125688999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++++.++..
T Consensus 171 ~l~~~~~~~ 179 (191)
T cd01875 171 EAVRAVLNP 179 (191)
T ss_pred HHHHHHhcc
Confidence 999988764
No 31
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.91 E-value=7.4e-24 Score=186.16 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=91.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+||+.++.++..||++++++|+|+|+ ++..++.+. ..|+..+... .+++|++|||
T Consensus 49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilVg 116 (182)
T cd04172 49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF--CPNTKMLLVG 116 (182)
T ss_pred CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHH--CCCCCEEEEe
Confidence 56778999999999999999999999999999999998 456777776 4565555443 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce-EEEEEeeccChhh-HHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV-FKIYRTTALDPKL-VKKT 339 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~-~~~~~tSA~d~~n-i~~v 339 (358)
||+||.+..-....+.. .. ..+...+++.++-. ... +.+++|||++++| |+++
T Consensus 117 NK~DL~~~~~~~~~~~~-----~~----~~~v~~~~~~~~a~----------------~~~~~~~~E~SAk~~~n~v~~~ 171 (182)
T cd04172 117 CKSDLRTDLTTLVELSN-----HR----QTPVSYDQGANMAK----------------QIGAATYIECSALQSENSVRDI 171 (182)
T ss_pred EChhhhcChhhHHHHHh-----cC----CCCCCHHHHHHHHH----------------HcCCCEEEECCcCCCCCCHHHH
Confidence 99998542110000000 00 01134455665521 122 3688999999999 9999
Q ss_pred HHHHHHHHHH
Q 018283 340 FKLVDETLRR 349 (358)
Q Consensus 340 f~~i~~~i~~ 349 (358)
|..+...+++
T Consensus 172 F~~~~~~~~~ 181 (182)
T cd04172 172 FHVATLACVN 181 (182)
T ss_pred HHHHHHHHhc
Confidence 9999886654
No 32
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=2.7e-23 Score=181.62 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=93.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++.++..||++++++|+|+|+ ++.++++.. ..|+..+.+.. +++|++|||
T Consensus 45 ~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~----------~~~~Sf~~~~~~w~~~i~~~~--~~~piilvg 112 (176)
T cd04133 45 DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL----------ISRASYENVLKKWVPELRHYA--PNVPIVLVG 112 (176)
T ss_pred CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEc----------CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 55679999999999999999999999999999999998 567788776 35777665432 479999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTF 340 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf 340 (358)
||+||.+++... .. +. . .-....+++.+|... ..+ .+++|||+++.||+++|
T Consensus 113 nK~Dl~~~~~~~--~~------~~--~-~~~v~~~~~~~~a~~----------------~~~~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 113 TKLDLRDDKQYL--AD------HP--G-ASPITTAQGEELRKQ----------------IGAAAYIECSSKTQQNVKAVF 165 (176)
T ss_pred eChhhccChhhh--hh------cc--C-CCCCCHHHHHHHHHH----------------cCCCEEEECCCCcccCHHHHH
Confidence 999996543210 00 00 0 001344555554211 123 47899999999999999
Q ss_pred HHHHHHHH
Q 018283 341 KLVDETLR 348 (358)
Q Consensus 341 ~~i~~~i~ 348 (358)
+.+.+.++
T Consensus 166 ~~~~~~~~ 173 (176)
T cd04133 166 DAAIKVVL 173 (176)
T ss_pred HHHHHHHh
Confidence 99998764
No 33
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=1.7e-23 Score=190.29 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=94.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.||||+||+.|+.++..||++++++|+|+|+ ++.+++... ..|+..+... .++.|++||+
T Consensus 57 ~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilVg 124 (232)
T cd04174 57 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI----------SRPETVDSALKKWKAEIMDY--CPSTRILLIG 124 (232)
T ss_pred CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEEC----------CChHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 56778999999999999999999999999999999998 456777764 4555555432 2468999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChh-hHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPK-LVKKT 339 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~-ni~~v 339 (358)
||+||.++.-....+.. .. ......+++.+|... ..+ .+++|||++++ ||+++
T Consensus 125 NK~DL~~~~~~~~~l~~-----~~----~~~Vs~~e~~~~a~~----------------~~~~~~~EtSAktg~~~V~e~ 179 (232)
T cd04174 125 CKTDLRTDLSTLMELSN-----QK----QAPISYEQGCALAKQ----------------LGAEVYLECSAFTSEKSIHSI 179 (232)
T ss_pred ECcccccccchhhhhcc-----cc----CCcCCHHHHHHHHHH----------------cCCCEEEEccCCcCCcCHHHH
Confidence 99998542100000000 00 011345566665221 124 47899999998 89999
Q ss_pred HHHHHHHHHHhhhh
Q 018283 340 FKLVDETLRRRHLF 353 (358)
Q Consensus 340 f~~i~~~i~~~~~~ 353 (358)
|..++..+++..+.
T Consensus 180 F~~~~~~~~~~~~~ 193 (232)
T cd04174 180 FRSASLLCLNKLSP 193 (232)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998876444
No 34
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=5.5e-23 Score=183.29 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=91.3
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc---CCCCCCCcEEEE
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK---QPCFEKTSFMLF 260 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~---~~~~~~~~iilv 260 (358)
...+.+.+|||+|++.++.+|..||++++++|+|+|+ ++.+++.+...|+..+.. .+...++|++||
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~----------t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv 116 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDV----------TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLL 116 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 5678999999999999999999999999999999998 456777777666655532 222357899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+...+. ...+++.++... .....+++|||++++||+++|
T Consensus 117 ~NK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 117 ANKCDLKKRLA---------------------KDGEQMDQFCKE---------------NGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCcccccc---------------------cCHHHHHHHHHH---------------cCCceEEEEeCCCCCCHHHHH
Confidence 99999964211 223333333211 111467899999999999999
Q ss_pred HHHHHHHHHh
Q 018283 341 KLVDETLRRR 350 (358)
Q Consensus 341 ~~i~~~i~~~ 350 (358)
+++.+.+++.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=5.9e-23 Score=177.09 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=91.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..||++++++|+|+|++ +..++.....|+..+... ..++.|++|++|
T Consensus 47 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~n 115 (166)
T cd04122 47 NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARNL-TNPNTVIFLIGN 115 (166)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 556789999999999999999999999999999999984 556777777777766443 234689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++.++.. ...+.++++||++++||.++|..
T Consensus 116 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 116 KADLEAQRD---------------------VTYEEAKQFAD----------------ENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred CcccccccC---------------------cCHHHHHHHHH----------------HcCCEEEEEECCCCCCHHHHHHH
Confidence 999965431 12334444321 12356789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
++..+.+
T Consensus 159 l~~~~~~ 165 (166)
T cd04122 159 TAKKIYQ 165 (166)
T ss_pred HHHHHhh
Confidence 9988764
No 36
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=2e-22 Score=182.03 Aligned_cols=151 Identities=16% Similarity=0.108 Sum_probs=100.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++.+|..||++++++|+|+|+ ++..++.+...||..+... ...++|++||+|
T Consensus 40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv----------t~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgN 108 (220)
T cd04126 40 QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV----------SNVQSLEELEDRFLGLTDT-ANEDCLFAVVGN 108 (220)
T ss_pred EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEE
Confidence 34567899999999999999999999999999999998 4567788877888777653 335789999999
Q ss_pred CCCchhhhhcc----CCCcccccccccccCCCCcccHHHHHHHHHHHH-HHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 263 KFDIFEKKVLK----VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF-EELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 263 K~Dl~~eki~~----~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f-~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
|+||.+..... .+-.. ..+. ..-....+++.+|..+.- ...+..+-+ ....+.+++|||++|.||+
T Consensus 109 K~DL~~~~~~~~~~~~~~~~---~~~~---~~r~v~~~e~~~~a~~~~~~~~~~~~~~---~~~~~~~~E~SA~tg~~V~ 179 (220)
T cd04126 109 KLDLTEEGALAGQEKDAGDR---VSPE---DQRQVTLEDAKAFYKRINKYKMLDEDLS---PAAEKMCFETSAKTGYNVD 179 (220)
T ss_pred Cccccccccccccccccccc---cccc---ccccCCHHHHHHHHHHhCcccccccccc---ccccceEEEeeCCCCCCHH
Confidence 99997521100 00000 0000 001144566766633310 000000000 1123568899999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 018283 338 KTFKLVDETLRRRHLF 353 (358)
Q Consensus 338 ~vf~~i~~~i~~~~~~ 353 (358)
++|..+.+.++...+.
T Consensus 180 elf~~i~~~~~~~~~~ 195 (220)
T cd04126 180 ELFEYLFNLVLPLILA 195 (220)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998865443
No 37
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=170.21 Aligned_cols=121 Identities=20% Similarity=0.329 Sum_probs=101.4
Q ss_pred eccCceeeEeeccCCCCcc-cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~-~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
.||.|++...+ .. +.+.+++||+|||+..|..|.+||.++|++|||+|. ++..++++.-+.+-
T Consensus 46 tpT~GFn~k~v------~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS----------~D~krfeE~~~el~ 109 (185)
T KOG0074|consen 46 TPTNGFNTKKV------EYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDS----------TDEKRFEEISEELV 109 (185)
T ss_pred cccCCcceEEE------eecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeC----------CchHhHHHHHHHHH
Confidence 58899988777 44 449999999999999999999999999999999994 67888988888888
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchhh--------hhccCCCcccccccccccCCCCcccHHHHHHHHH
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFEK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~e--------ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~ 303 (358)
+++....+..+|++++.||+|+..+ |+.-..++++.|..+.+++.++ .+...+.+|+.
T Consensus 110 ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~-eg~~dg~~wv~ 175 (185)
T KOG0074|consen 110 ELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL-EGSTDGSDWVQ 175 (185)
T ss_pred HHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc-cCccCcchhhh
Confidence 8888777888999999999999753 3333467788999999988887 66777777754
No 38
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.90 E-value=1.1e-22 Score=176.70 Aligned_cols=129 Identities=20% Similarity=0.299 Sum_probs=94.4
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
+|.|+....+ ..+.+.+.+||++|++.++..|..||++++++|||+|.+ +..++.+...++..+
T Consensus 44 ~t~g~~~~~~------~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~ 107 (173)
T cd04154 44 PTLGFQIKTL------EYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSS----------DRLRLDDCKRELKEL 107 (173)
T ss_pred CccccceEEE------EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence 4555444344 344688999999999999999999999999999999973 456777777888888
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
+......++|+++++||+|+.+.. ..++..+++. .. .. ..+.+.++
T Consensus 108 ~~~~~~~~~p~iiv~nK~Dl~~~~-----------------------~~~~~~~~~~-----~~---~~---~~~~~~~~ 153 (173)
T cd04154 108 LQEERLAGATLLILANKQDLPGAL-----------------------SEEEIREALE-----LD---KI---SSHHWRIQ 153 (173)
T ss_pred HhChhhcCCCEEEEEECcccccCC-----------------------CHHHHHHHhC-----cc---cc---CCCceEEE
Confidence 765555689999999999986421 1122222211 00 00 12457889
Q ss_pred EeeccChhhHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~ 345 (358)
++||++++||.++|+++.+
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999864
No 39
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=3.4e-23 Score=181.34 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=89.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+++|||+||+.++.++..||++++++|+|+|+ ++.+++... ..|+..+... .+++|++|||
T Consensus 45 ~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdi----------t~~~Sf~~~~~~w~~~i~~~--~~~~~iilVg 112 (178)
T cd04131 45 DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDI----------SRPETLDSVLKKWRGEIQEF--CPNTKVLLVG 112 (178)
T ss_pred CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEEC----------CChhhHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence 56778999999999999999999999999999999998 456777775 4565555433 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhh-HHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL-VKKT 339 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~n-i~~v 339 (358)
||+||.++.-....+. +.. .-+...+++.+|-.+ ..+ .+++|||++++| |+++
T Consensus 113 nK~DL~~~~~~~~~~~------~~~---~~~v~~~e~~~~a~~----------------~~~~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 113 CKTDLRTDLSTLMELS------HQR---QAPVSYEQGCAIAKQ----------------LGAEIYLECSAFTSEKSVRDI 167 (178)
T ss_pred EChhhhcChhHHHHHH------hcC---CCCCCHHHHHHHHHH----------------hCCCEEEECccCcCCcCHHHH
Confidence 9999964210000000 000 001334556555211 123 578999999996 9999
Q ss_pred HHHHHHHHH
Q 018283 340 FKLVDETLR 348 (358)
Q Consensus 340 f~~i~~~i~ 348 (358)
|..+....+
T Consensus 168 F~~~~~~~~ 176 (178)
T cd04131 168 FHVATMACL 176 (178)
T ss_pred HHHHHHHHh
Confidence 999988654
No 40
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.2e-23 Score=169.39 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=100.2
Q ss_pred eccCceee----EeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283 166 VRTTGVVE----IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241 (358)
Q Consensus 166 ~~T~gi~e----~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~ 241 (358)
+.|.|+.. +.+ ++..++++||||+||++||+....||+.++++|+|+|+|. .++...+-+|+.
T Consensus 37 gatigvdfmiktvev------~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc-------qpsfdclpewlr 103 (213)
T KOG0095|consen 37 GATIGVDFMIKTVEV------NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-------QPSFDCLPEWLR 103 (213)
T ss_pred CceeeeeEEEEEEEE------CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-------CcchhhhHHHHH
Confidence 45666544 445 7889999999999999999999999999999999999974 355677778887
Q ss_pred HHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 018283 242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDR 321 (358)
Q Consensus 242 ~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~ 321 (358)
..++..++ ++--+||+||.|+-+++... .-|.+.|.+ ..
T Consensus 104 eie~yan~----kvlkilvgnk~d~~drrevp--------------------------~qigeefs~-----------~q 142 (213)
T KOG0095|consen 104 EIEQYANN----KVLKILVGNKIDLADRREVP--------------------------QQIGEEFSE-----------AQ 142 (213)
T ss_pred HHHHHhhc----ceEEEeeccccchhhhhhhh--------------------------HHHHHHHHH-----------hh
Confidence 77777665 45569999999997765321 111222222 12
Q ss_pred eEEEEEeeccChhhHHHHHHHHHHHHHHh
Q 018283 322 VFKIYRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 322 ~~~~~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
.+|+.+|||++.+||+.+|..++-.++..
T Consensus 143 dmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 143 DMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 36778899999999999999999888764
No 41
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=165.97 Aligned_cols=137 Identities=17% Similarity=0.249 Sum_probs=98.3
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|+||..-.-+.- ...+.+++++|||+||+++|.+...||+++.++|+++|++ +.+++.....|...
T Consensus 51 vsTvGidFKvKTvy--r~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDit----------NeeSf~svqdw~tq 118 (193)
T KOG0093|consen 51 VSTVGIDFKVKTVY--RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNSVQDWITQ 118 (193)
T ss_pred eeeeeeeEEEeEee--ecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecC----------CHHHHHHHHHHHHH
Confidence 56777764221111 1457799999999999999999999999999999999984 44444444444434
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+ ..-.-.+.|++|++||||+..||... .+.+..++.+ -.+.+
T Consensus 119 I-ktysw~naqvilvgnKCDmd~eRvis---------------------~e~g~~l~~~----------------LGfef 160 (193)
T KOG0093|consen 119 I-KTYSWDNAQVILVGNKCDMDSERVIS---------------------HERGRQLADQ----------------LGFEF 160 (193)
T ss_pred h-eeeeccCceEEEEecccCCccceeee---------------------HHHHHHHHHH----------------hChHH
Confidence 3 32233589999999999999887632 2333333221 23567
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHhhh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRRHL 352 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~~~ 352 (358)
++||||.+.||+.+|+.+++.|-++--
T Consensus 161 FEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 161 FETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999865533
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=1.9e-22 Score=175.98 Aligned_cols=119 Identities=15% Similarity=0.206 Sum_probs=91.8
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+.+||++||+.++..|..|+++++++|+|+|++ +..++.+...|+..+......++.|+++|+||
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLT----------NEQSFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 45688999999999999999999999999999999983 56777777777777755444457899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.+++. ...+++..+.. . ..+.++++||+++.|++++|+.+
T Consensus 130 ~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 130 ADLEDQRQ---------------------VSEEQAKALAD-K---------------YGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred ccchhcCc---------------------cCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHHH
Confidence 99965421 12233333311 1 12457899999999999999999
Q ss_pred HHHHHH
Q 018283 344 DETLRR 349 (358)
Q Consensus 344 ~~~i~~ 349 (358)
.+.+++
T Consensus 173 ~~~~~~ 178 (180)
T cd04127 173 LDLVMK 178 (180)
T ss_pred HHHHHh
Confidence 988865
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=1.5e-22 Score=173.28 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=89.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++|||+|+++++.+|..|+++++++|+|+|++ +..++.+...|++.+.......++|+++++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 45 DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSIT----------SQSSFNDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred CCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556688999999999999999999999999999999984 4566777777777776543345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+. +. ..+.++++||+++.||.++|++
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 115 KCDLEDERV---------------------VSREEGQALA-RQ---------------WGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred Cccccccce---------------------ecHHHHHHHH-HH---------------cCCeEEEecCCCCCCHHHHHHH
Confidence 999864321 1122222221 11 1155789999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98765
No 44
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.89 E-value=2.8e-22 Score=173.52 Aligned_cols=133 Identities=19% Similarity=0.335 Sum_probs=98.1
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|.....+ ..+++.+++||++|++.++.+|..||++++++|||+|.+ +..++.++..++..
T Consensus 28 ~~t~g~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s----------~~~s~~~~~~~l~~ 91 (167)
T cd04161 28 APTVGFTPTKL------RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS----------DDDRVQEVKEILRE 91 (167)
T ss_pred cCcccceEEEE------EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC----------chhHHHHHHHHHHH
Confidence 35666655555 556789999999999999999999999999999999974 45688888999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.+.+...++|++||+||+|+.+.+- ..+..+.+.- ..+ ++ .....+++
T Consensus 92 l~~~~~~~~~piliv~NK~Dl~~~~~-----------------------~~~i~~~~~l--~~~-----~~-~~~~~~~~ 140 (167)
T cd04161 92 LLQHPRVSGKPILVLANKQDKKNALL-----------------------GADVIEYLSL--EKL-----VN-ENKSLCHI 140 (167)
T ss_pred HHcCccccCCcEEEEEeCCCCcCCCC-----------------------HHHHHHhcCc--ccc-----cC-CCCceEEE
Confidence 88776667899999999999965421 1111111000 000 00 01235778
Q ss_pred EEeeccCh------hhHHHHHHHHHH
Q 018283 326 YRTTALDP------KLVKKTFKLVDE 345 (358)
Q Consensus 326 ~~tSA~d~------~ni~~vf~~i~~ 345 (358)
..+||++| +|+.+.|+|+..
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 88999998 899999999864
No 45
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=6.3e-23 Score=167.33 Aligned_cols=132 Identities=17% Similarity=0.297 Sum_probs=110.4
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|++..++ +.+.+++.+||+|||++||.+|..|++++++++||+|. ++.+.+..+...+.+
T Consensus 50 iptvGfnmrk~------tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa----------ad~~k~~~sr~EL~~ 113 (186)
T KOG0075|consen 50 IPTVGFNMRKV------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA----------ADPDKLEASRSELHD 113 (186)
T ss_pred cccccceeEEe------ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec----------CCcccchhhHHHHHH
Confidence 58999999999 88999999999999999999999999999999999997 457888889999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++..+.+.++|++++|||.|+.++- + . .+.|...- -....+|.+.+
T Consensus 114 LL~k~~l~gip~LVLGnK~d~~~AL--------------------~---~---~~li~rmg--------L~sitdREvcC 159 (186)
T KOG0075|consen 114 LLDKPSLTGIPLLVLGNKIDLPGAL--------------------S---K---IALIERMG--------LSSITDREVCC 159 (186)
T ss_pred HhcchhhcCCcEEEecccccCcccc--------------------c---H---HHHHHHhC--------ccccccceEEE
Confidence 9999999999999999999987641 0 0 11111111 11225789999
Q ss_pred EEeeccChhhHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i 347 (358)
|.+||++..||+.+.+|+.+.-
T Consensus 160 ~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHh
Confidence 9999999999999999998764
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=2.5e-22 Score=172.64 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=90.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+|||+|++.++.+|..|+++++++|+|+|+ ++..++.+..+|+..+.+.....+.|++|++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 45 DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 55678899999999999999999999999999999998 35567777777888776654456899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+ .++ ..+.++++||+++.|++++|.+
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 115 KCDLEDERV---------------------VGKEQGQNL-ARQ---------------WGCAFLETSAKAKINVNEIFYD 157 (164)
T ss_pred CCcchhccE---------------------EcHHHHHHH-HHH---------------hCCEEEEeeCCCCCCHHHHHHH
Confidence 999965321 112222222 111 1256789999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 158 l~~~l 162 (164)
T cd04175 158 LVRQI 162 (164)
T ss_pred HHHHh
Confidence 98765
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=1.4e-22 Score=176.94 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=89.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++.+|..||++++++|+|+|+ ++..++.+... |+..+... .+++|++|++
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~w~~~i~~~--~~~~piilvg 112 (175)
T cd01874 45 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV----------VSPSSFENVKEKWVPEITHH--CPKTPFLLVG 112 (175)
T ss_pred CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 45568999999999999999999999999999999998 45667777654 55555432 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+.++......+.. +. ......+++.++.. ++ +.+.++++||++++||+++|+
T Consensus 113 nK~Dl~~~~~~~~~l~~------~~---~~~v~~~~~~~~a~-~~--------------~~~~~~e~SA~tg~~v~~~f~ 168 (175)
T cd01874 113 TQIDLRDDPSTIEKLAK------NK---QKPITPETGEKLAR-DL--------------KAVKYVECSALTQKGLKNVFD 168 (175)
T ss_pred ECHhhhhChhhHHHhhh------cc---CCCcCHHHHHHHHH-Hh--------------CCcEEEEecCCCCCCHHHHHH
Confidence 99998654221111110 00 00133455554421 11 225688999999999999999
Q ss_pred HHHHH
Q 018283 342 LVDET 346 (358)
Q Consensus 342 ~i~~~ 346 (358)
.+.+.
T Consensus 169 ~~~~~ 173 (175)
T cd01874 169 EAILA 173 (175)
T ss_pred HHHHH
Confidence 88764
No 48
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=4.4e-22 Score=171.82 Aligned_cols=128 Identities=20% Similarity=0.374 Sum_probs=93.5
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|.....+ +.+.+.+.+||++|++.++.+|..||++++++|||+|.+ +..++..+..++..
T Consensus 29 ~pt~g~~~~~i------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t----------~~~s~~~~~~~l~~ 92 (164)
T cd04162 29 VPTTGFNSVAI------PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA----------DSERLPLARQELHQ 92 (164)
T ss_pred cccCCcceEEE------eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 36666655555 667899999999999999999999999999999999974 45577778888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.... +++|+++|+||+|+..++. ..+..+.+. ...+ + .++.+.+
T Consensus 93 ~~~~~--~~~piilv~NK~Dl~~~~~-----------------------~~~i~~~~~--~~~~-----~---~~~~~~~ 137 (164)
T cd04162 93 LLQHP--PDLPLVVLANKQDLPAARS-----------------------VQEIHKELE--LEPI-----A---RGRRWIL 137 (164)
T ss_pred HHhCC--CCCcEEEEEeCcCCcCCCC-----------------------HHHHHHHhC--Chhh-----c---CCCceEE
Confidence 76543 5799999999999865431 111111000 0000 1 1345777
Q ss_pred EEeeccC------hhhHHHHHHHHH
Q 018283 326 YRTTALD------PKLVKKTFKLVD 344 (358)
Q Consensus 326 ~~tSA~d------~~ni~~vf~~i~ 344 (358)
++|||++ +++|+++|+.+.
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHh
Confidence 8888888 999999999765
No 49
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.89 E-value=4e-22 Score=171.59 Aligned_cols=132 Identities=22% Similarity=0.365 Sum_probs=97.3
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.++....+ ...+..+.+|||+|++.++..|..+|++++++|||+|.+ +.+++.....++..
T Consensus 35 ~~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~----------~~~~~~~~~~~~~~ 98 (167)
T cd04160 35 TPTVGLNIGTI------EVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDST----------DRERFEESKSALEK 98 (167)
T ss_pred CCccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECc----------hHHHHHHHHHHHHH
Confidence 35556555455 455789999999999999999999999999999999974 34567777888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.+.....++|++|++||+|+..+ ....+..+++....... ....+.+
T Consensus 99 ~~~~~~~~~~p~ilv~NK~D~~~~-----------------------~~~~~~~~~~~~~~~~~---------~~~~~~~ 146 (167)
T cd04160 99 VLRNEALEGVPLLILANKQDLPDA-----------------------LSVEEIKEVFQDKAEEI---------GRRDCLV 146 (167)
T ss_pred HHhChhhcCCCEEEEEEccccccC-----------------------CCHHHHHHHhccccccc---------cCCceEE
Confidence 877665678999999999998542 11222233222111111 1234678
Q ss_pred EEeeccChhhHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~ 345 (358)
+.+||++++|++++|+++++
T Consensus 147 ~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCcCHHHHHHHHhc
Confidence 89999999999999999875
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=1.7e-22 Score=182.71 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=89.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++.+|..||++++++|+|||++ +..++.....|+..+... ..+.|++||||
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~----------~~~s~~~i~~w~~~i~~~--~~~~piilvgN 125 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCC----------CHHHHHHHHHHHHHHHHh--CCCCcEEEEEE
Confidence 345689999999999999999999999999999999984 556777777777776543 35789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..... ..++. .+ .. .+.+.+++|||+++.||.++|.+
T Consensus 126 K~Dl~~~~v----------------------~~~~~-~~-----~~-----------~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 126 KVDVKNRQV----------------------KAKQV-TF-----HR-----------KKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred chhhhhccC----------------------CHHHH-HH-----HH-----------hcCCEEEEcCCCCCCCHHHHHHH
Confidence 999853211 11111 22 11 12366789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+++.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99988753
No 51
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=5.6e-22 Score=174.72 Aligned_cols=130 Identities=18% Similarity=0.312 Sum_probs=91.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...++.+.+||++|++.++..|..|+++++++|+|+|++ +.+++.+...++..+++.....+.|+++++|
T Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 59 TIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAA----------DPERFQESKEELDSLLSDEELANVPFLILGN 128 (190)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence 445688999999999999999999999999999999984 4567777888888888765566799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhh-cCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQ-STAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~-~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
|+|+.++ ...++..+++.. +...... -..+....+.+.++.|||++++|+.++|+
T Consensus 129 K~Dl~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 129 KIDLPGA-----------------------VSEEELRQALGL-YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred CCCCCCC-----------------------cCHHHHHHHhCc-ccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 9998532 111222222110 0000000 00000012457789999999999999999
Q ss_pred HHHHH
Q 018283 342 LVDET 346 (358)
Q Consensus 342 ~i~~~ 346 (358)
++...
T Consensus 185 ~l~~~ 189 (190)
T cd00879 185 WLSQY 189 (190)
T ss_pred HHHhh
Confidence 99764
No 52
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.88 E-value=2.2e-22 Score=181.90 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=93.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.|.+|||+|++.|+.+|..||++++++|+|||++ +..++......|...+.. ..+++|++||+|
T Consensus 45 ~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis----------~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgn 113 (222)
T cd04173 45 DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDIS----------RPETLDSVLKKWQGETQE-FCPNAKVVLVGC 113 (222)
T ss_pred CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-hCCCCCEEEEEE
Confidence 567789999999999999999999999999999999984 567777776655544332 335799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh-HHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL-VKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n-i~~vf~ 341 (358)
|+||....-....+.. .. .-+...+++..+-. ++ .-+.+++|||++++| |+++|+
T Consensus 114 K~DL~~~~~~~~~~~~-----~~----~~pIs~e~g~~~ak-~~--------------~~~~y~E~SAk~~~~~V~~~F~ 169 (222)
T cd04173 114 KLDMRTDLATLRELSK-----QR----LIPVTHEQGTVLAK-QV--------------GAVSYVECSSRSSERSVRDVFH 169 (222)
T ss_pred Ccccccchhhhhhhhh-----cc----CCccCHHHHHHHHH-Hc--------------CCCEEEEcCCCcCCcCHHHHHH
Confidence 9999653210000000 00 00133455555411 10 114688999999996 999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
.+....+..
T Consensus 170 ~~~~~~~~~ 178 (222)
T cd04173 170 VATVASLGR 178 (222)
T ss_pred HHHHHHHhc
Confidence 999887764
No 53
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=5.9e-22 Score=169.41 Aligned_cols=130 Identities=22% Similarity=0.427 Sum_probs=94.1
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ ....+.+++|||+|++.++.+|..||++++++|||+|.+ +..++..+..++..
T Consensus 30 ~~t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~~~~~~~~~~~~ 93 (162)
T cd04157 30 VPTVGFNVESF------EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSS----------DRLRLVVVKDELEL 93 (162)
T ss_pred cCccccceEEE------EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence 36666655555 557789999999999999999999999999999999974 45666677777777
Q ss_pred HHcCCCC--CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283 246 VLKQPCF--EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 323 (358)
Q Consensus 246 i~~~~~~--~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~ 323 (358)
+.+.+.+ .++|+++++||+|+.++. ...+....+ .+ . ....+.+
T Consensus 94 ~~~~~~~~~~~~p~iiv~NK~Dl~~~~-----------------------~~~~~~~~l-----~~-----~-~~~~~~~ 139 (162)
T cd04157 94 LLNHPDIKHRRVPILFFANKMDLPDAL-----------------------TAVKITQLL-----GL-----E-NIKDKPW 139 (162)
T ss_pred HHcCcccccCCCCEEEEEeCccccCCC-----------------------CHHHHHHHh-----CC-----c-cccCceE
Confidence 7665433 478999999999986431 011111110 00 0 0012346
Q ss_pred EEEEeeccChhhHHHHHHHHHH
Q 018283 324 KIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 324 ~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
.++.+||++++|++++|+++.+
T Consensus 140 ~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 140 HIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEeeCCCCCchHHHHHHHhc
Confidence 7888999999999999999865
No 54
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=5e-22 Score=169.86 Aligned_cols=129 Identities=20% Similarity=0.338 Sum_probs=91.1
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
||.|.....+ +...+++++||++|++.++..|..|+++++++|+|+|.+ +..++.....++..+
T Consensus 29 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~ 92 (158)
T cd04151 29 PTIGFNVETV------TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST----------DRDRLGTAKEELHAM 92 (158)
T ss_pred CccCcCeEEE------EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence 4445444444 556789999999999999999999999999999999984 334555556666666
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
++.....+.|++|++||+|+.++. ...+.... + .. ... ..+.+.++
T Consensus 93 ~~~~~~~~~piiiv~nK~Dl~~~~-----------------------~~~~i~~~----~-~~---~~~---~~~~~~~~ 138 (158)
T cd04151 93 LEEEELKGAVLLVFANKQDMPGAL-----------------------SEAEISEK----L-GL---SEL---KDRTWSIF 138 (158)
T ss_pred HhchhhcCCcEEEEEeCCCCCCCC-----------------------CHHHHHHH----h-Cc---ccc---CCCcEEEE
Confidence 665555679999999999985421 11111111 1 00 000 12346788
Q ss_pred EeeccChhhHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~ 345 (358)
++||+++.||+++|+++.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999999875
No 55
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=6.7e-22 Score=169.62 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=88.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++||++|+++++.+|..|+++++++|+|+|++ +..++.+...|+..+.......+.|++|++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piviv~n 114 (163)
T cd04176 45 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLV----------NQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114 (163)
T ss_pred CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556678999999999999999999999999999999984 5566777777777776544446789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....++..+ ... ..+.++++||+++.|+.++|.+
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 115 KVDLESERE---------------------VSSAEGRAL-AEE---------------WGCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred CccchhcCc---------------------cCHHHHHHH-HHH---------------hCCEEEEecCCCCCCHHHHHHH
Confidence 999854211 112223222 111 1245688999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+++.+
T Consensus 158 l~~~l 162 (163)
T cd04176 158 IVRQM 162 (163)
T ss_pred HHHhc
Confidence 98653
No 56
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.88 E-value=7.7e-22 Score=170.03 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=89.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..++++++++++|+|++ +.+++.+...|+..+... ...++|+++++|
T Consensus 46 ~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piivv~n 114 (165)
T cd01865 46 NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWSTQIKTY-SWDNAQVILVGN 114 (165)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCCEEEEEE
Confidence 445688999999999999999999999999999999984 456777777777776442 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++.++. +. ..+.++++||+++.|+.++|++
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 115 KCDMEDERV---------------------VSSERGRQLA-DQ---------------LGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred CcccCcccc---------------------cCHHHHHHHH-HH---------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999965421 1123333321 11 1245789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+-+
T Consensus 158 l~~~~~~ 164 (165)
T cd01865 158 LVDIICD 164 (165)
T ss_pred HHHHHHh
Confidence 9887643
No 57
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.88 E-value=9.6e-22 Score=175.07 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=93.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
.+..+.+.+||++|++.++.+|..|+++++++|+|+|++ +.+++.+...|+..+... ....|++||+|
T Consensus 51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~piivVgN 118 (199)
T cd04110 51 NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------NGESFVNVKRWLQEIEQN--CDDVCKVLVGN 118 (199)
T ss_pred CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 455678999999999999999999999999999999984 556777777788777553 24689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+. ...+++..+... ..+.++++||+++.||.++|++
T Consensus 119 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 119 KNDDPERKV---------------------VETEDAYKFAGQ----------------MGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEECCCCcCHHHHHHH
Confidence 999864321 122333333211 1256789999999999999999
Q ss_pred HHHHHHHhhhh
Q 018283 343 VDETLRRRHLF 353 (358)
Q Consensus 343 i~~~i~~~~~~ 353 (358)
+.+.++.....
T Consensus 162 l~~~~~~~~~~ 172 (199)
T cd04110 162 ITELVLRAKKD 172 (199)
T ss_pred HHHHHHHhhhc
Confidence 99999865443
No 58
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.88 E-value=6.1e-22 Score=174.02 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=87.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.... ....| +||+|
T Consensus 45 ~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t----------~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgn 112 (182)
T cd04128 45 RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT----------RKSTLNSIKEWYRQARGFN-KTAIP-ILVGT 112 (182)
T ss_pred CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCE-EEEEE
Confidence 456789999999999999999999999999999999984 5667777777777775532 23466 67899
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+.-.. ....-.+++.+| .. ...+.+++|||+++.||+++|++
T Consensus 113 K~Dl~~~~~~~----------------~~~~~~~~~~~~-----a~-----------~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 113 KYDLFADLPPE----------------EQEEITKQARKY-----AK-----------AMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred chhccccccch----------------hhhhhHHHHHHH-----HH-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 99996421000 000011222222 11 11255789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.++.
T Consensus 161 l~~~l~~ 167 (182)
T cd04128 161 VLAKAFD 167 (182)
T ss_pred HHHHHHh
Confidence 9998875
No 59
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=162.24 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=100.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC-CCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~iilv~ 261 (358)
.+..+++++|||+||++||+....||++.-+++.|+|+ +++.++++...|+++...+-. ..++-+.|||
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvydi----------tnr~sfehv~~w~~ea~m~~q~P~k~VFlLVG 123 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDI----------TNRESFEHVENWVKEAAMATQGPDKVVFLLVG 123 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEec----------cchhhHHHHHHHHHHHHHhcCCCCeeEEEEec
Confidence 56789999999999999999999999999999999998 578889888888887654433 3356678999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
.|+||...|. ...++|.++- +...+.+.+|||+++.||+++|+
T Consensus 124 hKsDL~SqRq---------------------Vt~EEaEklA----------------a~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 124 HKSDLQSQRQ---------------------VTAEEAEKLA----------------ASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred cccchhhhcc---------------------ccHHHHHHHH----------------HhcCceEEEecccCCCcHHHHHH
Confidence 9999976543 4456666541 23568899999999999999999
Q ss_pred HHHHHHHHhh
Q 018283 342 LVDETLRRRH 351 (358)
Q Consensus 342 ~i~~~i~~~~ 351 (358)
.+.+.|...-
T Consensus 167 mlaqeIf~~i 176 (213)
T KOG0091|consen 167 MLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHH
Confidence 9999997643
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=8.1e-22 Score=169.45 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=88.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|+++++++++|+|+ ++.+++++...|+..+.+. ...+.|+++++|
T Consensus 45 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgn 113 (161)
T cd04117 45 DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDI----------SSERSYQHIMKWVSDVDEY-APEGVQKILIGN 113 (161)
T ss_pred CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 44568899999999999999999999999999999998 4567788887887776543 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+++. ...+++..+.. . ..+.+++|||+++.||+++|.+
T Consensus 114 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~v~~~f~~ 156 (161)
T cd04117 114 KADEEQKRQ---------------------VGDEQGNKLAK-E---------------YGMDFFETSACTNSNIKESFTR 156 (161)
T ss_pred CcccccccC---------------------CCHHHHHHHHH-H---------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999865431 12234444311 1 1145689999999999999999
Q ss_pred HHHH
Q 018283 343 VDET 346 (358)
Q Consensus 343 i~~~ 346 (358)
+.+.
T Consensus 157 l~~~ 160 (161)
T cd04117 157 LTEL 160 (161)
T ss_pred HHhh
Confidence 8763
No 61
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=1.2e-21 Score=172.08 Aligned_cols=123 Identities=15% Similarity=0.253 Sum_probs=89.7
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+.+|||+|+++++..|..|+++++++|+|+|.+ +.+++.....++..+.......+.|++|++||
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSV----------DVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 36789999999999999999999999999999999974 44566676677776665444457899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.... ..++...++ .+.. .. ....+.++.+||++++|++++|+++
T Consensus 119 ~D~~~~~-----------------------~~~~~~~~~-----~~~~--~~---~~~~~~~~~~SA~~~~gi~~l~~~l 165 (183)
T cd04152 119 QDLPNAL-----------------------SVSEVEKLL-----ALHE--LS---ASTPWHVQPACAIIGEGLQEGLEKL 165 (183)
T ss_pred cCccccC-----------------------CHHHHHHHh-----Cccc--cC---CCCceEEEEeecccCCCHHHHHHHH
Confidence 9985320 111111111 1000 00 1223667899999999999999999
Q ss_pred HHHHHH
Q 018283 344 DETLRR 349 (358)
Q Consensus 344 ~~~i~~ 349 (358)
.+.+++
T Consensus 166 ~~~l~~ 171 (183)
T cd04152 166 YEMILK 171 (183)
T ss_pred HHHHHH
Confidence 998864
No 62
>PTZ00369 Ras-like protein; Provisional
Probab=99.88 E-value=1e-21 Score=173.46 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=92.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++|||+|++.++.+|..|+++++++|+|+|++ +..++.....|+..+.+.....++|+++++|
T Consensus 49 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 118 (189)
T PTZ00369 49 DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSIT----------SRSSFEEIASFREQILRVKDKDRVPMILVGN 118 (189)
T ss_pred CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556788999999999999999999999999999999984 5566777777777765543345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ....++..+.. . ..+.+++|||+++.||.++|.+
T Consensus 119 K~Dl~~~~~---------------------i~~~~~~~~~~-~---------------~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 119 KCDLDSERQ---------------------VSTGEGQELAK-S---------------FGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred Ccccccccc---------------------cCHHHHHHHHH-H---------------hCCEEEEeeCCCCCCHHHHHHH
Confidence 999854311 12233333311 1 1245789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99988754
No 63
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=7.8e-22 Score=171.80 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=89.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..||++++++|||+|.+ +.+++.....++..+++.....++|+++++|
T Consensus 55 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s----------~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 55 VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST----------DRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 455789999999999999999999999999999999974 4567777888888887766566799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+. .+.++..+.+.... . ..+.+.++.+||++++||+++|++
T Consensus 125 K~Dl~~~-----------------------~~~~~i~~~l~~~~--------~---~~~~~~~~~~SA~~g~gi~e~~~~ 170 (174)
T cd04153 125 KQDLKGA-----------------------MTPAEISESLGLTS--------I---RDHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred CCCCCCC-----------------------CCHHHHHHHhCccc--------c---cCCceEEEecccCCCCCHHHHHHH
Confidence 9998541 01111111110000 0 123467888999999999999999
Q ss_pred HHH
Q 018283 343 VDE 345 (358)
Q Consensus 343 i~~ 345 (358)
+.+
T Consensus 171 l~~ 173 (174)
T cd04153 171 IAS 173 (174)
T ss_pred Hhc
Confidence 864
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=7.6e-22 Score=169.27 Aligned_cols=119 Identities=12% Similarity=0.231 Sum_probs=88.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC----CCCCcEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC----FEKTSFM 258 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~----~~~~~ii 258 (358)
....+.+++|||+|++.++..|..|+++++++|+|+|++ +.+++.....|+..+..... ..+.|++
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii 114 (168)
T cd04119 45 RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVT----------DRQSFEALDSWLKEMKQEGGPHGNMENIVVV 114 (168)
T ss_pred CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhccccccCCCceEE
Confidence 556789999999999999999999999999999999984 44555555556655543211 2468999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
+++||+|+.+++. ...+++..+.. ...+.++++||++++|+.+
T Consensus 115 lv~nK~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 115 VCANKIDLTKHRA---------------------VSEDEGRLWAE----------------SKGFKYFETSACTGEGVNE 157 (168)
T ss_pred EEEEchhcccccc---------------------cCHHHHHHHHH----------------HcCCeEEEEECCCCCCHHH
Confidence 9999999864211 22333333311 1125578999999999999
Q ss_pred HHHHHHHHHH
Q 018283 339 TFKLVDETLR 348 (358)
Q Consensus 339 vf~~i~~~i~ 348 (358)
+|+++.+.++
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 65
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=4.4e-22 Score=173.59 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=89.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+.+.+.+.+|||+|++.++..|..||++++++|+|+|++ +.+++.+... |+..+... .+++|++||+
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~sf~~~~~~~~~~~~~~--~~~~piilvg 112 (174)
T cd01871 45 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG 112 (174)
T ss_pred CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence 556789999999999999999999999999999999984 5677777654 55544432 2479999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+||...+.....+... . ......+++.++.. ++ +.+.++++||++++||+++|+
T Consensus 113 nK~Dl~~~~~~~~~~~~~--~-------~~~v~~~~~~~~~~-~~--------------~~~~~~e~Sa~~~~~i~~~f~ 168 (174)
T cd01871 113 TKLDLRDDKDTIEKLKEK--K-------LTPITYPQGLAMAK-EI--------------GAVKYLECSALTQKGLKTVFD 168 (174)
T ss_pred eChhhccChhhHHHHhhc--c-------CCCCCHHHHHHHHH-Hc--------------CCcEEEEecccccCCHHHHHH
Confidence 999996433211000000 0 00133455555422 11 124678999999999999999
Q ss_pred HHHHH
Q 018283 342 LVDET 346 (358)
Q Consensus 342 ~i~~~ 346 (358)
.+++.
T Consensus 169 ~l~~~ 173 (174)
T cd01871 169 EAIRA 173 (174)
T ss_pred HHHHh
Confidence 98763
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.88 E-value=6.4e-22 Score=168.72 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=86.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++.+|..|+++++++++|+|++ +..++.+...|+..+.......+.|+++++|
T Consensus 45 ~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~----------~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 114 (162)
T cd04138 45 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------SRKSFEDIHTYREQIKRVKDSDDVPMVLVGN 114 (162)
T ss_pred CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445677899999999999999999999999999999984 4456666666666665543345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+.. ....++..+.. ...+.++++||+++.||+++|++
T Consensus 115 K~Dl~~~~----------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 115 KCDLAART----------------------VSSRQGQDLAK----------------SYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred Ccccccce----------------------ecHHHHHHHHH----------------HhCCeEEEecCCCCCCHHHHHHH
Confidence 99986421 11223333211 11245788999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98654
No 67
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.88 E-value=1.3e-21 Score=169.03 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=90.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++||++|++.+...|..++++++++|+|+|++ +..++.+..+|+..+... ...+.|+++++|
T Consensus 48 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~n 116 (167)
T cd01867 48 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT----------DEKSFENIRNWMRNIEEH-ASEDVERMLVGN 116 (167)
T ss_pred CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHhHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 455688999999999999999999999999999999983 456677777777766543 235789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+.+. ...+++..+.. ...+.++++||+++.||.++|++
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 117 KCDMEEKRV---------------------VSKEEGEALAD----------------EYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred CcccccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999975321 12233333311 11245789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998865
No 68
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=1.4e-21 Score=172.74 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=88.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLF 260 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iilv 260 (358)
+...+.+++|||+|++.++..|..||++++++|+|+|++ +.+++.....|+..+... ....++|++|+
T Consensus 43 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 112 (190)
T cd04144 43 DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT----------SRSTFERVERFREQIQRVKDESAADVPIMIV 112 (190)
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 456678999999999999999999999999999999984 445555555555555332 12357899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+..++. ....++.++. +. ..+.++++||+++.||+++|
T Consensus 113 gNK~Dl~~~~~---------------------v~~~~~~~~~-~~---------------~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 113 GNKCDKVYERE---------------------VSTEEGAALA-RR---------------LGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred EEChhccccCc---------------------cCHHHHHHHH-HH---------------hCCEEEEecCCCCCCHHHHH
Confidence 99999864321 1122232221 11 12467899999999999999
Q ss_pred HHHHHHHHHhh
Q 018283 341 KLVDETLRRRH 351 (358)
Q Consensus 341 ~~i~~~i~~~~ 351 (358)
.++.+.+.+..
T Consensus 156 ~~l~~~l~~~~ 166 (190)
T cd04144 156 YTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHhh
Confidence 99999887543
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=7.7e-22 Score=174.23 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=92.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+++||++|++.++.+|..||++++++|+|+|++ +.+++.... .|+..+... .++.|++||+
T Consensus 44 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~----------~~~sf~~~~~~~~~~i~~~--~~~~piilvg 111 (189)
T cd04134 44 DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD----------SPDSLENVESKWLGEIREH--CPGVKLVLVA 111 (189)
T ss_pred CCEEEEEEEEECCCChhccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 456689999999999999999999999999999999984 556666554 355555432 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+||.+++-....+. .... -....+++.++... .+.+.+++|||+++.||+++|.
T Consensus 112 NK~Dl~~~~~~~~~~~---~~~~------~~v~~~~~~~~~~~---------------~~~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 112 LKCDLREARNERDDLQ---RYGK------HTISYEEGLAVAKR---------------INALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred EChhhccChhhHHHHh---hccC------CCCCHHHHHHHHHH---------------cCCCEEEEccCCcCCCHHHHHH
Confidence 9999976432110000 0000 00233444443110 1225678999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.++..
T Consensus 168 ~l~~~~~~~ 176 (189)
T cd04134 168 EAARVALNV 176 (189)
T ss_pred HHHHHHhcc
Confidence 999998754
No 70
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.87 E-value=1.6e-21 Score=169.31 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=88.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++||++|++.+..+|..||++++++|+|+|++ +..++.....|+..+.+.....+.|+++|+|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iilVgn 114 (170)
T cd04108 45 LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLT----------DVASLEHTRQWLEDALKENDPSSVLLFLVGT 114 (170)
T ss_pred CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 445688999999999999999999999999999999983 4566666677777765543334678999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+..+.-. + ...+++..+. .+ ....++++||+++.|+.++|+.
T Consensus 115 K~Dl~~~~~~--~-----------------~~~~~~~~~~-~~---------------~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 115 KKDLSSPAQY--A-----------------LMEQDAIKLA-AE---------------MQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred ChhcCccccc--c-----------------ccHHHHHHHH-HH---------------cCCeEEEEECCCCCCHHHHHHH
Confidence 9998533110 0 1112233321 11 1245678999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+...+..
T Consensus 160 l~~~~~~ 166 (170)
T cd04108 160 VAALTFE 166 (170)
T ss_pred HHHHHHH
Confidence 9887743
No 71
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=6e-22 Score=163.48 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=96.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
......+.||||+||++|..+-+.||++.+++++|+|+ +++.+|.....|..++.. .....+.+++|+|
T Consensus 58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDI----------TDrdSFqKVKnWV~Elr~-mlGnei~l~IVGN 126 (218)
T KOG0088|consen 58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDI----------TDRDSFQKVKNWVLELRT-MLGNEIELLIVGN 126 (218)
T ss_pred ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEec----------cchHHHHHHHHHHHHHHH-HhCCeeEEEEecC
Confidence 44678899999999999999999999999999999999 577888888888877744 2334678999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||.+++- ....+|..|-.. -...+++|||+++.+|.++|+.
T Consensus 127 KiDLEeeR~---------------------Vt~qeAe~YAes----------------vGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 127 KIDLEEERQ---------------------VTRQEAEAYAES----------------VGALYMETSAKDNVGISELFES 169 (218)
T ss_pred cccHHHhhh---------------------hhHHHHHHHHHh----------------hchhheecccccccCHHHHHHH
Confidence 999988764 334555555211 1234678999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+...++..
T Consensus 170 Lt~~MiE~ 177 (218)
T KOG0088|consen 170 LTAKMIEH 177 (218)
T ss_pred HHHHHHHH
Confidence 99888764
No 72
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=2.8e-21 Score=169.94 Aligned_cols=126 Identities=18% Similarity=0.287 Sum_probs=91.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..+++.+.+||++|++.++..|..||++++++|||+|.+ +..++.++..++..+++.....++|+++++|
T Consensus 57 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~----------~~~~~~~~~~~l~~l~~~~~~~~~piliv~N 126 (184)
T smart00178 57 AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY----------DKERFAESKRELDALLSDEELATVPFLILGN 126 (184)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC----------cHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 445789999999999999999999999999999999984 4567778888888887765667899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhh-hcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF-QSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~-~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
|+|+..+. +.++..+.+. +.. .........+.+.++.+||++++|+.++|+
T Consensus 127 K~Dl~~~~-----------------------~~~~i~~~l~-----l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~ 178 (184)
T smart00178 127 KIDAPYAA-----------------------SEDELRYALG-----LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFK 178 (184)
T ss_pred CccccCCC-----------------------CHHHHHHHcC-----CCcccccccccCCceeEEEEeecccCCChHHHHH
Confidence 99985321 1111111110 000 000000023567899999999999999999
Q ss_pred HHHHH
Q 018283 342 LVDET 346 (358)
Q Consensus 342 ~i~~~ 346 (358)
++.+.
T Consensus 179 wl~~~ 183 (184)
T smart00178 179 WLSQY 183 (184)
T ss_pred HHHhh
Confidence 99764
No 73
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=2.9e-21 Score=166.30 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=90.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++||++|++.+...|..|+++++++|+|+|++ +.+++.+...|+..+... ...+.|+++++|
T Consensus 47 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~n 115 (166)
T cd01869 47 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN 115 (166)
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECc----------CHHHHHhHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 445678999999999999999999999999999999984 456777777777766442 234689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+++. ...+++..+.. . ..+.++++||++++||.++|..
T Consensus 116 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 116 KCDLTDKRV---------------------VDYSEAQEFAD-E---------------LGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred ChhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEECCCCcCHHHHHHH
Confidence 999864321 12233433321 1 1256789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+.+
T Consensus 159 i~~~~~~ 165 (166)
T cd01869 159 MAREIKK 165 (166)
T ss_pred HHHHHHh
Confidence 9988763
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.87 E-value=1.1e-21 Score=174.88 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+.+.+.+.+|||+|++.++.+|..||++++++|+|+|++ +..++.....|...+.... .++|++||+|
T Consensus 40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t----------~~~S~~~i~~w~~~i~~~~--~~~piilvgN 107 (200)
T smart00176 40 NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------ARVTYKNVPNWHRDLVRVC--ENIPIVLCGN 107 (200)
T ss_pred CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhC--CCCCEEEEEE
Confidence 456799999999999999999999999999999999984 5667777777777665432 4799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+....+ . .+..++. . ...+.+++|||++++||+++|.+
T Consensus 108 K~Dl~~~~v----------------------~-~~~~~~~-----~-----------~~~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 108 KVDVKDRKV----------------------K-AKSITFH-----R-----------KKNLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred CcccccccC----------------------C-HHHHHHH-----H-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999853211 1 1112221 0 12467899999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.++..
T Consensus 149 l~~~i~~~ 156 (200)
T smart00176 149 LARKLIGD 156 (200)
T ss_pred HHHHHHhc
Confidence 99988653
No 75
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=3.4e-21 Score=165.31 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=89.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|+++++..|..++++++++|+|+|+ .+.+++.+...|+..+.+.....++|+++++|
T Consensus 44 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~n 113 (164)
T smart00173 44 DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI----------TDRQSFEEIKKFREQILRVKDRDDVPIVLVGN 113 (164)
T ss_pred CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 45668899999999999999999999999999999998 34566767667666665543344789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. . ..+.++++||+++.|++++|++
T Consensus 114 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 114 KCDLESERV---------------------VSTEEGKELAR-Q---------------WGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred Cccccccce---------------------EcHHHHHHHHH-H---------------cCCEEEEeecCCCCCHHHHHHH
Confidence 999864321 11223333211 1 1256789999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 157 l~~~~~ 162 (164)
T smart00173 157 LVREIR 162 (164)
T ss_pred HHHHHh
Confidence 998765
No 76
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=2.5e-21 Score=174.49 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=88.3
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CCCCCcEEEEee
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLFLN 262 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~iilv~N 262 (358)
..+.+.+||++|++.++.+|..||++++++|+|+|++ +.+++.....|+..+.... ...++|+++|+|
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t----------~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVT----------NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence 4689999999999999999999999999999999984 4556666655655554321 124578999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+.+. ...+++..+.. . ..+.++++||++++||+++|++
T Consensus 118 K~DL~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 118 KTDLEHNRT---------------------VKDDKHARFAQ-A---------------NGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred Ccccccccc---------------------cCHHHHHHHHH-H---------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999964321 12233333311 1 1245778999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+++.+....
T Consensus 161 l~~~l~~~~ 169 (215)
T cd04109 161 LAAELLGVD 169 (215)
T ss_pred HHHHHHhcc
Confidence 999987643
No 77
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=2.6e-21 Score=167.30 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=89.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+.+.+.+.+|||+|++.+...|..+|++++++|+|+|+ ++.+++.....|+..+.... .++|+++++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~--~~~piiiv~n 112 (166)
T cd00877 45 NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDV----------TSRVTYKNVPNWHRDLVRVC--GNIPIVLCGN 112 (166)
T ss_pred CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC--CCCcEEEEEE
Confidence 45678999999999999999999999999999999998 45667777667777765532 2799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+... . .++.++ .. .+.+.+++|||++++||+++|++
T Consensus 113 K~Dl~~~~~----------------------~-~~~~~~-----~~-----------~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 113 KVDIKDRKV----------------------K-AKQITF-----HR-----------KKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred chhcccccC----------------------C-HHHHHH-----HH-----------HcCCEEEEEeCCCCCChHHHHHH
Confidence 999963211 0 112222 11 12366889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9999875
No 78
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2e-22 Score=166.38 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=101.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++|||+||++||++...+|++|-++++++|+ ++..++.+...|+..+-.+....+..|+|++|
T Consensus 63 r~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDl----------T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGN 132 (219)
T KOG0081|consen 63 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDL----------TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGN 132 (219)
T ss_pred cceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEec----------cchHHHHHHHHHHHHHHHhhccCCCCEEEEcC
Confidence 45668899999999999999999999999999999999 57788999999999987777778889999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||.+.+... .++|.. +..+| .+.+++|||-++.||+++.+.
T Consensus 133 K~DL~~~R~Vs---------------------~~qa~~-La~ky---------------glPYfETSA~tg~Nv~kave~ 175 (219)
T KOG0081|consen 133 KADLEDQRVVS---------------------EDQAAA-LADKY---------------GLPYFETSACTGTNVEKAVEL 175 (219)
T ss_pred ccchhhhhhhh---------------------HHHHHH-HHHHh---------------CCCeeeeccccCcCHHHHHHH
Confidence 99998876522 233322 23333 367899999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.|+++
T Consensus 176 LldlvM~R 183 (219)
T KOG0081|consen 176 LLDLVMKR 183 (219)
T ss_pred HHHHHHHH
Confidence 99988765
No 79
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.86 E-value=3.4e-21 Score=166.48 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=85.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC---CCCCCCcEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~---~~~~~~~iil 259 (358)
+...+.+++||++|+++++.+|..||++++++|+|+|++ +.+++.....|...+... ....++|++|
T Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 119 (170)
T cd04116 50 DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVD----------DSQSFQNLSNWKKEFIYYADVKEPESFPFVV 119 (170)
T ss_pred CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhcccccCCCCcEEE
Confidence 567789999999999999999999999999999999984 445555555555555432 1234689999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
++||.|+.... ...+++.++..+ + ....++++||+++.|+.++
T Consensus 120 v~nK~Dl~~~~----------------------~~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 120 LGNKNDIPERQ----------------------VSTEEAQAWCRE-N--------------GDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEECccccccc----------------------cCHHHHHHHHHH-C--------------CCCeEEEEECCCCCCHHHH
Confidence 99999985211 123344443221 1 1245789999999999999
Q ss_pred HHHHHHH
Q 018283 340 FKLVDET 346 (358)
Q Consensus 340 f~~i~~~ 346 (358)
|+.+.+.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9998764
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.86 E-value=5.5e-21 Score=164.11 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=86.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++..+.+.+||++|++. ..|+++++++|+|+|+ ++.+++.+...|+..+.......++|++|++|
T Consensus 43 ~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~i~~~~~~~~~piilvgn 107 (158)
T cd04103 43 DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL----------ENEASFQTVYNLYHQLSSYRNISEIPLILVGT 107 (158)
T ss_pred CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 55568899999999975 3578999999999998 57889999888888887665556789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+...... + ...+++.++.. . .+.+.+++|||+++.||+++|..
T Consensus 108 K~Dl~~~~~~--~-----------------v~~~~~~~~~~-~--------------~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 108 QDAISESNPR--V-----------------IDDARARQLCA-D--------------MKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred HHHhhhcCCc--c-----------------cCHHHHHHHHH-H--------------hCCCcEEEEecCCCCCHHHHHHH
Confidence 9998532110 0 22334444321 1 12367889999999999999999
Q ss_pred HHHH
Q 018283 343 VDET 346 (358)
Q Consensus 343 i~~~ 346 (358)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 81
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=5.3e-21 Score=164.27 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=85.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.+. .++.|+++++|
T Consensus 45 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~p~ivv~n 112 (161)
T cd04124 45 EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVT----------RKITYKNLSKWYEELREY--RPEIPCIVVAN 112 (161)
T ss_pred CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCcEEEEEE
Confidence 556789999999999999999999999999999999984 344555555566555432 24689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+..+. ..++.++ .. ...+.++.+||+++.|+.++|+.
T Consensus 113 K~Dl~~~~------------------------~~~~~~~-----~~-----------~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 113 KIDLDPSV------------------------TQKKFNF-----AE-----------KHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred CccCchhH------------------------HHHHHHH-----HH-----------HcCCeEEEEeCCCCCCHHHHHHH
Confidence 99984210 1112222 11 11255778999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+++.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99888753
No 82
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.86 E-value=3.6e-21 Score=164.78 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=93.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.+...+..++++++++|+|+|+ ++.+++.....|+..+..... .++|++|++|
T Consensus 44 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~----------~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~ 112 (162)
T PF00071_consen 44 DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDV----------TDEESFENLKKWLEEIQKYKP-EDIPIIVVGN 112 (162)
T ss_dssp TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEET----------TBHHHHHTHHHHHHHHHHHST-TTSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccccc-ccccceeeec
Confidence 56788999999999999999999999999999999998 466777777777777654322 4689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+++. ...+++.++..+ ..+.++++||+++.||.++|..
T Consensus 113 K~D~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 113 KSDLSDERE---------------------VSVEEAQEFAKE----------------LGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTTGGGGSS---------------------SCHHHHHHHHHH----------------TTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccc---------------------chhhHHHHHHHH----------------hCCEEEEEECCCCCCHHHHHHH
Confidence 999976321 234455544221 1267899999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.|+
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999886
No 83
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.86 E-value=6.1e-21 Score=165.30 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=88.6
Q ss_pred cccceEEEEEecCCCchhh-hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r-~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++ ..|..|+++++++|+|+|+ ++..++.....|+..+.......++|+++|+
T Consensus 47 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 47 DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDV----------TNMASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4566899999999999997 5899999999999999998 4556677777777666554444679999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC---hhhHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD---PKLVKK 338 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d---~~ni~~ 338 (358)
||+|+.+.+. ...+++..+. . ...+.+++|||++ +.||.+
T Consensus 117 nK~Dl~~~~~---------------------~~~~~~~~~~-----~-----------~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 117 NKCDLREQIQ---------------------VPTDLAQRFA-----D-----------AHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred ECccchhhcC---------------------CCHHHHHHHH-----H-----------HcCCcEEEEeccCCcCCCCHHH
Confidence 9999975431 1122233221 1 1125678999999 999999
Q ss_pred HHHHHHHHH
Q 018283 339 TFKLVDETL 347 (358)
Q Consensus 339 vf~~i~~~i 347 (358)
+|..+++.+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999998765
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=5.5e-21 Score=175.75 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=91.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--------CCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--------CFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--------~~~~ 254 (358)
+...+.++||||+|++.++.++..|+.+++++|+|||+ ++.+++++...|++.+.... ...+
T Consensus 44 ~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv----------~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 44 RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSL----------DNRESFEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhhcccccccccCCC
Confidence 55668999999999999999999999999999999998 45677888888887776532 2357
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|++|++||+|+..++. ...+++.+++.. ...+.++++||+++.
T Consensus 114 ~piIivgNK~Dl~~~~~---------------------v~~~ei~~~~~~---------------~~~~~~~evSAktg~ 157 (247)
T cd04143 114 IPMVICGNKADRDFPRE---------------------VQRDEVEQLVGG---------------DENCAYFEVSAKKNS 157 (247)
T ss_pred CcEEEEEECccchhccc---------------------cCHHHHHHHHHh---------------cCCCEEEEEeCCCCC
Confidence 89999999999964321 223333333211 123668899999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
||+++|+++....
T Consensus 158 gI~elf~~L~~~~ 170 (247)
T cd04143 158 NLDEMFRALFSLA 170 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 85
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=6.2e-21 Score=171.51 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=92.4
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+++|||+||+.+...|..||++++++|+|+|+ ++.+++.+...|+..+........+|++|++||
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK 118 (211)
T cd04111 49 GVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDI----------TNRESFEHVHDWLEEARSHIQPHRPVFILVGHK 118 (211)
T ss_pred CCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEc
Confidence 4567899999999999999999999999999999998 456778788888887765433346789999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
.|+...+. ...+++..+ .+. ..+.++++||++++||.++|+.+
T Consensus 119 ~Dl~~~~~---------------------v~~~~~~~~-~~~---------------~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 119 CDLESQRQ---------------------VTREEAEKL-AKD---------------LGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred cccccccc---------------------cCHHHHHHH-HHH---------------hCCEEEEEeCCCCCCHHHHHHHH
Confidence 99865321 122333332 111 22678899999999999999999
Q ss_pred HHHHHHh
Q 018283 344 DETLRRR 350 (358)
Q Consensus 344 ~~~i~~~ 350 (358)
.+.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9988754
No 86
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=8e-21 Score=167.34 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=90.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..++++++++|+|+|++ +..++.....|+..+.... ..+.|+++++|
T Consensus 45 ~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~n 113 (188)
T cd04125 45 ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVT----------DQESFENLKFWINEINRYA-RENVIKVIVAN 113 (188)
T ss_pred CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 455788999999999999999999999999999999984 4566777777776665422 23589999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+.+. .+.+.+..+.. ...+.++++||+++.||+++|.+
T Consensus 114 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 114 KSDLVNNKV---------------------VDSNIAKSFCD----------------SLNIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred CCCCccccc---------------------CCHHHHHHHHH----------------HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999864321 12233333311 11246789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+++.
T Consensus 157 l~~~~~~~ 164 (188)
T cd04125 157 LVKLIIKR 164 (188)
T ss_pred HHHHHHHH
Confidence 99998753
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=8.4e-21 Score=164.02 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=90.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++||++|++.++.+|..++++++++|+|+|++ +.+.++....|+..+.......+.|+++++|
T Consensus 45 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 114 (168)
T cd04177 45 DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVT----------SEASLNELGELREQVLRIKDSDNVPMVLVGN 114 (168)
T ss_pred CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 556689999999999999999999999999999999984 4556666666666665433345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+...+. ...+++.++ .+++ +.+.++++||+.+.||.++|++
T Consensus 115 K~D~~~~~~---------------------~~~~~~~~~-~~~~--------------~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 115 KADLEDDRQ---------------------VSREDGVSL-SQQW--------------GNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred ChhccccCc---------------------cCHHHHHHH-HHHc--------------CCceEEEeeCCCCCCHHHHHHH
Confidence 999865321 112223322 1111 1245788999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.++.
T Consensus 159 i~~~~~~ 165 (168)
T cd04177 159 LVRQIIC 165 (168)
T ss_pred HHHHHhh
Confidence 9988865
No 88
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=7.7e-21 Score=162.40 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=87.2
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
..+.+.+||++|++.++..|..|+++++++|||+|.+ +..++.+...++..++......+.|+++++||+
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~----------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 111 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS----------DEARLDESQKELKHILKNEHIKGVPVVLLANKQ 111 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHhchhhcCCCEEEEEECc
Confidence 4578999999999999999999999999999999974 445778888888888776655689999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+.... ..++....+. .... . ..+.+.++.|||++++||.++|++|.
T Consensus 112 Dl~~~~-----------------------~~~~i~~~~~--~~~~-----~---~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 112 DLPGAL-----------------------TAEEITRRFK--LKKY-----C---SDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred ccccCc-----------------------CHHHHHHHcC--Cccc-----C---CCCcEEEEecccccCCChHHHHHHHh
Confidence 985320 0111111100 0000 0 12346778899999999999999885
Q ss_pred H
Q 018283 345 E 345 (358)
Q Consensus 345 ~ 345 (358)
+
T Consensus 159 ~ 159 (160)
T cd04156 159 S 159 (160)
T ss_pred c
Confidence 3
No 89
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.2e-22 Score=161.02 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=109.9
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|++...+ .++++++++||.|||.+.|+.|+.||.+++++|||||. +++.++.-+...|..
T Consensus 47 kPtigfnve~v------~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDs----------sd~dris~a~~el~~ 110 (182)
T KOG0072|consen 47 KPTIGFNVETV------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDS----------SDRDRISIAGVELYS 110 (182)
T ss_pred CCCCCcCcccc------ccccccceeeEccCcccccHHHHHHhcccceEEEEEec----------cchhhhhhhHHHHHH
Confidence 47888887777 78999999999999999999999999999999999996 567788888899999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++..+.+++.-+++|+||+|...... ..++..-+.- ..+ +++.+.+
T Consensus 111 mL~E~eLq~a~llv~anKqD~~~~~t-----------------------~~E~~~~L~l--~~L---------k~r~~~I 156 (182)
T KOG0072|consen 111 MLQEEELQHAKLLVFANKQDYSGALT-----------------------RSEVLKMLGL--QKL---------KDRIWQI 156 (182)
T ss_pred HhccHhhcCceEEEEeccccchhhhh-----------------------HHHHHHHhCh--HHH---------hhheeEE
Confidence 99999999999999999999854421 2222221111 111 3567999
Q ss_pred EEeeccChhhHHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
+.+||..+++++.+++|+.+.+..
T Consensus 157 v~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 157 VKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred EeeccccccCCcHHHHHHHHHHhc
Confidence 999999999999999999998864
No 90
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=8.2e-21 Score=163.62 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=83.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLF 260 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iilv 260 (358)
+...+.+.+||++|+++++.+|..++++++++|+|+|++ +..++.+...|++.+... ....++|++||
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 45 SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVT----------SKQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 446688999999999999999999999999999999984 445555555555444321 12357899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+.+.+. ....++..+.. ...+.++++||++++||+++|
T Consensus 115 ~nK~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 115 GNKCDESHKRE---------------------VSSNEGAACAT----------------EWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred EECccccccCe---------------------ecHHHHHHHHH----------------HhCCcEEEeecCCCCCHHHHH
Confidence 99999854211 11223333211 112457899999999999999
Q ss_pred HHHHH
Q 018283 341 KLVDE 345 (358)
Q Consensus 341 ~~i~~ 345 (358)
+++.+
T Consensus 158 ~~l~~ 162 (165)
T cd04140 158 QELLN 162 (165)
T ss_pred HHHHh
Confidence 99864
No 91
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=1.1e-20 Score=162.53 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=86.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..++++++++|+|+|++ +..++.....|+..+.... ..++|+++|+|
T Consensus 48 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~n 116 (165)
T cd01864 48 EGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDIT----------RRSSFESVPHWIEEVEKYG-ASNVVLLLIGN 116 (165)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 445578999999999999999999999999999999984 4456666666777665432 34789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+.+. ...+++..+.. . .+...++++||+++.|++++|+.
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~-~--------------~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 117 KCDLEEQRE---------------------VLFEEACTLAE-K--------------NGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred Ccccccccc---------------------cCHHHHHHHHH-H--------------cCCcEEEEEECCCCCCHHHHHHH
Confidence 999965321 12233333211 1 11245788999999999999999
Q ss_pred HHHH
Q 018283 343 VDET 346 (358)
Q Consensus 343 i~~~ 346 (358)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 8864
No 92
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=1.5e-20 Score=166.27 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=91.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.||||+||+++...|..|+++++++|+|+|++ +.+++.+...|+..+... ...+.|+++++|
T Consensus 46 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~----------~~~s~~~~~~~~~~i~~~-~~~~~piiiv~N 114 (191)
T cd04112 46 DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT----------NKASFDNIRAWLTEIKEY-AQEDVVIMLLGN 114 (191)
T ss_pred CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 456689999999999999999999999999999999984 456676666677666543 223689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+..++. ...+++..+ ... ..+.++++||+++.|+.++|.+
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~l-~~~---------------~~~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 115 KADMSGERV---------------------VKREDGERL-AKE---------------YGVPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred cccchhccc---------------------cCHHHHHHH-HHH---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999964321 111222222 111 1245789999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+++.+.....
T Consensus 158 l~~~~~~~~~ 167 (191)
T cd04112 158 VAKELKHRKY 167 (191)
T ss_pred HHHHHHHhcc
Confidence 9999987643
No 93
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=1e-20 Score=161.96 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=88.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..++++++++|+|+|++ +..++.....|+..+... ..+++|++|++|
T Consensus 45 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~iivv~n 113 (161)
T cd04113 45 GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------NRTSFEALPTWLSDARAL-ASPNIVVILVGN 113 (161)
T ss_pred CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 455688999999999999999999999999999999984 455666666666655332 235789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+...+. ...+++..+... ..+.++++||+++.|+.++|++
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 114 KSDLADQRE---------------------VTFLEASRFAQE----------------NGLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred chhcchhcc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999965321 223444443221 1267889999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+++.+
T Consensus 157 ~~~~~ 161 (161)
T cd04113 157 CARSI 161 (161)
T ss_pred HHHhC
Confidence 98753
No 94
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=8.7e-21 Score=162.45 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=88.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+.+.....+.|++|++|
T Consensus 46 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 46 DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVT----------DRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 455688999999999999999999999999999999984 4556777777777776543345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.++++||+++.||+++|++
T Consensus 116 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 116 KADLEHQRK---------------------VSREEGQELARK----------------LKIPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred Cccccccce---------------------ecHHHHHHHHHH----------------cCCcEEEeeCCCCCCHHHHHHH
Confidence 999864321 122333333211 1245688999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04145 159 LVRVI 163 (164)
T ss_pred HHHhh
Confidence 88754
No 95
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.7e-21 Score=162.26 Aligned_cols=136 Identities=20% Similarity=0.311 Sum_probs=107.4
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|+|.+.-.+ ......+.+||.|||+..|++|..||..++++|||+|. ++.+|+.++...|+.
T Consensus 54 ~~tvgLnig~i------~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa----------~~~eR~~~~~t~~~~ 117 (197)
T KOG0076|consen 54 TPTVGLNIGTI------EVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDA----------TDRERFEESKTAFEK 117 (197)
T ss_pred ecccceeecce------eeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecC----------CCHHHHHHHHHHHHH
Confidence 57888887666 66788999999999999999999999999999999995 678999999999999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++.+....++|+++++||+|+.++.-. .++.....- .+++ ..+...+
T Consensus 118 v~~~E~leg~p~L~lankqd~q~~~~~--------------------~El~~~~~~-----~e~~--------~~rd~~~ 164 (197)
T KOG0076|consen 118 VVENEKLEGAPVLVLANKQDLQNAMEA--------------------AELDGVFGL-----AELI--------PRRDNPF 164 (197)
T ss_pred HHHHHHhcCCchhhhcchhhhhhhhhH--------------------HHHHHHhhh-----hhhc--------CCccCcc
Confidence 999999999999999999998664210 111111110 1221 2334445
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
.-+||.+|+||++...|+++.+-+.
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 5589999999999999999888654
No 96
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=1.8e-20 Score=162.01 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=91.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..+..|+++++++|||+|++ +.+++.....|+..+.... .+++|+++++|
T Consensus 49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~pvivv~n 117 (168)
T cd01866 49 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTSWLEDARQHS-NSNMTIMLIGN 117 (168)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 555678999999999999999999999999999999983 5567777777777775432 35789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+..++. ...+++..+.. ...+.++++||++++|+.++|..
T Consensus 118 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 118 KCDLESRRE---------------------VSYEEGEAFAK----------------EHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred CcccccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999864321 12333333321 11256789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988764
No 97
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=1.9e-20 Score=160.86 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=87.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++||++|++.++.+|..++++++++|+|+|++ +.+++.+...|+..+.... ..++|++|++|
T Consensus 48 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~n 116 (165)
T cd01868 48 DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KKQTFENVERWLKELRDHA-DSNIVIMLVGN 116 (165)
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 445678999999999999999999999999999999984 4556666667777665432 33689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+...+. ...++...+... ..+.++++||+++.|++++|++
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 117 KSDLRHLRA---------------------VPTEEAKAFAEK----------------NGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred Ccccccccc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999864321 122333333210 1256789999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 88765
No 98
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=2e-20 Score=168.06 Aligned_cols=120 Identities=14% Similarity=0.246 Sum_probs=91.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..+.|+++++|
T Consensus 51 ~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~----------~~~s~~~l~~~~~~~~~~~-~~~~piiiv~n 119 (210)
T PLN03108 51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHA-NANMTIMLIGN 119 (210)
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 556678999999999999999999999999999999984 4566666666766654432 34789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+...+. ...+++.++.. ...+.++++||+++.||.++|.+
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 120 KCDLAHRRA---------------------VSTEEGEQFAK----------------EHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred CccCccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999865321 12334444321 12356889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+++.++++
T Consensus 163 l~~~~~~~ 170 (210)
T PLN03108 163 TAAKIYKK 170 (210)
T ss_pred HHHHHHHH
Confidence 99998764
No 99
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.85 E-value=4e-20 Score=158.30 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=90.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|+++++..|..++++++++|||+|.+ +.+++.....|+..+..... .++|+++++|
T Consensus 46 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~iivv~n 114 (163)
T cd01860 46 DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT----------SEESFEKAKSWVKELQRNAS-PNIIIALVGN 114 (163)
T ss_pred CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEE
Confidence 566789999999999999999999999999999999973 55667777777777755432 5789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+. ...+++..+... ..+.++++||+++.|+.++|++
T Consensus 115 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd01860 115 KADLESKRQ---------------------VSTEEAQEYADE----------------NGLLFFETSAKTGENVNELFTE 157 (163)
T ss_pred CccccccCc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999864211 122333333111 1256889999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.|
T Consensus 158 l~~~l 162 (163)
T cd01860 158 IAKKL 162 (163)
T ss_pred HHHHh
Confidence 98875
No 100
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=5.1e-21 Score=165.99 Aligned_cols=118 Identities=10% Similarity=0.007 Sum_probs=84.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++..+.+.+||++|++.++..|..||++++++|||+|.+ +..++.....|+..+.. ..++|+++|+|
T Consensus 50 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~----------~~~s~~~~~~~~~~~~~---~~~~p~iiv~N 116 (169)
T cd01892 50 YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS----------DPKSFSYCAEVYKKYFM---LGEIPCLFVAA 116 (169)
T ss_pred CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHhcc---CCCCeEEEEEE
Confidence 556688999999999999999999999999999999984 44566666666665422 23689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+++... ..++.++ .+.+ + - -.++++||++++|++++|+.
T Consensus 117 K~Dl~~~~~~~---------------------~~~~~~~-~~~~--------~-----~-~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 117 KADLDEQQQRY---------------------EVQPDEF-CRKL--------G-----L-PPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred ccccccccccc---------------------ccCHHHH-HHHc--------C-----C-CCCEEEEeccCccHHHHHHH
Confidence 99986432100 0111111 1111 0 0 12367999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.++.
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9988763
No 101
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=152.94 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=97.2
Q ss_pred CceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc
Q 018283 169 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248 (358)
Q Consensus 169 ~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~ 248 (358)
.|...+.+ .++.+++++||++||++||...+.||+++.+.+.|+|++ .+......-.|+....+
T Consensus 48 fgtriiev------sgqkiklqiwdtagqerfravtrsyyrgaagalmvydit----------rrstynhlsswl~dar~ 111 (215)
T KOG0097|consen 48 FGTRIIEV------SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARN 111 (215)
T ss_pred cceeEEEe------cCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEeh----------hhhhhhhHHHHHhhhhc
Confidence 34455666 889999999999999999999999999999999999984 33333333344444322
Q ss_pred CCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEe
Q 018283 249 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT 328 (358)
Q Consensus 249 ~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~t 328 (358)
-.-+++.|+|++||.||...+- ..+++|..|-. +..+.+.+.
T Consensus 112 -ltnpnt~i~lignkadle~qrd---------------------v~yeeak~fae----------------engl~fle~ 153 (215)
T KOG0097|consen 112 -LTNPNTVIFLIGNKADLESQRD---------------------VTYEEAKEFAE----------------ENGLMFLEA 153 (215)
T ss_pred -cCCCceEEEEecchhhhhhccc---------------------CcHHHHHHHHh----------------hcCeEEEEe
Confidence 2235789999999999976542 44677776621 245788899
Q ss_pred eccChhhHHHHHHHHHHHHHHh
Q 018283 329 TALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 329 SA~d~~ni~~vf~~i~~~i~~~ 350 (358)
||++|+||+++|-.-.+.|.+.
T Consensus 154 saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 154 SAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cccccCcHHHHHHHHHHHHHHh
Confidence 9999999999999999888753
No 102
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=2.6e-20 Score=159.36 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=84.2
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+++||++|++.++..|..|+++++++++|+|++ +.+++.....|...+... ..+.|+++++||
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK 115 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTT----------DRESFEAIESWKEKVEAE--CGDIPMVLVQTK 115 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 45689999999999999999999999999999999984 445666555666555332 347899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
.|+..+.. ...+++..+.. . ..+.++++||+++.|++++|+++
T Consensus 116 ~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 116 IDLLDQAV---------------------ITNEEAEALAK-R---------------LQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred hhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEECCCCCCHHHHHHHH
Confidence 99964321 12233333211 1 12467889999999999999998
Q ss_pred HHH
Q 018283 344 DET 346 (358)
Q Consensus 344 ~~~ 346 (358)
.+.
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 753
No 103
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=6.2e-20 Score=156.57 Aligned_cols=129 Identities=20% Similarity=0.329 Sum_probs=96.7
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
+|.|+....+ ....+.+.+||++|++.++..|..++++++++++|+|. .+..++.++..++..+
T Consensus 29 ~t~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~~~~~~~~~~~~ 92 (158)
T cd00878 29 PTIGFNVETV------EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS----------SDRERIEEAKEELHKL 92 (158)
T ss_pred CCcCcceEEE------EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHH
Confidence 4555555555 55678999999999999999999999999999999998 3556888888999888
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
.......+.|+++++||+|+.... ..++..+.+.... . ..+.+.++
T Consensus 93 ~~~~~~~~~piiiv~nK~D~~~~~-----------------------~~~~~~~~~~~~~--------~---~~~~~~~~ 138 (158)
T cd00878 93 LNEEELKGVPLLIFANKQDLPGAL-----------------------SVSELIEKLGLEK--------I---LGRRWHIQ 138 (158)
T ss_pred HhCcccCCCcEEEEeeccCCcccc-----------------------CHHHHHHhhChhh--------c---cCCcEEEE
Confidence 776555689999999999986421 1122222111110 0 12457788
Q ss_pred EeeccChhhHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~ 345 (358)
.+||+++.|+.++|+++.+
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998865
No 104
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.7e-20 Score=166.55 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=84.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
++..+.+++|||+||+. .....||++++++|+|+|+ ++..++.+... |...+... .+++|++||+
T Consensus 62 ~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvg 127 (195)
T cd01873 62 DGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSI----------ASPNSLRNVKTMWYPEIRHF--CPRVPVILVG 127 (195)
T ss_pred CCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEEC----------CChhHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 56679999999999975 3456699999999999998 45667776654 55555332 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCC-CCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVS-TGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~-~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
||+||....... .... .-+...+.. ......+++.++-. ...+.+++|||++++||+++|
T Consensus 128 NK~DL~~~~~~~--~~~~-~~~~~~~~~~~~~V~~~e~~~~a~----------------~~~~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 128 CKLDLRYADLDE--VNRA-RRPLARPIKNADILPPETGRAVAK----------------ELGIPYYETSVVTQFGVKDVF 188 (195)
T ss_pred Echhccccccch--hhhc-ccccccccccCCccCHHHHHHHHH----------------HhCCEEEEcCCCCCCCHHHHH
Confidence 999996421100 0000 000000000 01134566665521 123568899999999999999
Q ss_pred HHHHH
Q 018283 341 KLVDE 345 (358)
Q Consensus 341 ~~i~~ 345 (358)
+.+.+
T Consensus 189 ~~~~~ 193 (195)
T cd01873 189 DNAIR 193 (195)
T ss_pred HHHHH
Confidence 98875
No 105
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=2e-20 Score=164.45 Aligned_cols=125 Identities=21% Similarity=0.184 Sum_probs=90.6
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEee
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~N 262 (358)
...+.+.+|||+|++.++..|..++++++++|||+|++ +.+++++... |+..+... .+++|++|++|
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~n 113 (187)
T cd04132 46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD----------NPTSLDNVEDKWFPEVNHF--CPGTPIMLVGL 113 (187)
T ss_pred CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEe
Confidence 45688999999999999999999999999999999984 5567776654 55544332 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+..++-.. .....+++.++... + ....++++||+++.||.++|..
T Consensus 114 K~Dl~~~~~~~-----------------~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 114 KTDLRKDKNLD-----------------RKVTPAQAESVAKK-Q--------------GAFAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred ChhhhhCcccc-----------------CCcCHHHHHHHHHH-c--------------CCcEEEEccCCCCCCHHHHHHH
Confidence 99996542110 00223344443211 0 1125789999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+.+.++....
T Consensus 162 l~~~~~~~~~ 171 (187)
T cd04132 162 AIEEALKKEG 171 (187)
T ss_pred HHHHHHhhhh
Confidence 9999987643
No 106
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=6e-20 Score=158.46 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=88.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC---CCCCCCcEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~---~~~~~~~iil 259 (358)
....+.+++||++|++.+...|..|+++++++|+|+|++ +..++.+...|+..+... ....++|+++
T Consensus 45 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 114 (172)
T cd01862 45 DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVT----------NPKSFESLDSWRDEFLIQASPSDPENFPFVV 114 (172)
T ss_pred CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCccCCCCceEEE
Confidence 456688999999999999999999999999999999984 344555555555544332 2234789999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
++||+|+..++. ...++...+... ...+.++++||+++.|++++
T Consensus 115 v~nK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 115 LGNKIDLEEKRQ---------------------VSTKKAQQWCQS---------------NGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECcccccccc---------------------cCHHHHHHHHHH---------------cCCceEEEEECCCCCCHHHH
Confidence 999999964211 112332232211 11256788999999999999
Q ss_pred HHHHHHHHHHh
Q 018283 340 FKLVDETLRRR 350 (358)
Q Consensus 340 f~~i~~~i~~~ 350 (358)
|+++.+.+++.
T Consensus 159 ~~~i~~~~~~~ 169 (172)
T cd01862 159 FETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999988865
No 107
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.84 E-value=5.2e-20 Score=162.66 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=89.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..||++++++|+|+|++ +.+++.+...|+..+.+. ..++|++||+|
T Consensus 46 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~piilv~n 113 (193)
T cd04118 46 GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT----------DSSSFERAKFWVKELQNL--EEHCKIYLCGT 113 (193)
T ss_pred CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHhc--CCCCCEEEEEE
Confidence 556788999999999999999999999999999999984 456666666666666443 23789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+..-.. ......++.+|.. . ..+.++++||++++||.++|++
T Consensus 114 K~Dl~~~~~~~-----------------~~v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 114 KSDLIEQDRSL-----------------RQVDFHDVQDFAD-E---------------IKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred ccccccccccc-----------------CccCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 99985421000 0012233333311 1 1245678999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+++.
T Consensus 161 i~~~~~~~ 168 (193)
T cd04118 161 VAEDFVSR 168 (193)
T ss_pred HHHHHHHh
Confidence 99998764
No 108
>PLN03110 Rab GTPase; Provisional
Probab=99.84 E-value=4.4e-20 Score=166.56 Aligned_cols=120 Identities=14% Similarity=0.181 Sum_probs=89.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++||++|+++++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|+++++|
T Consensus 57 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piiiv~n 125 (216)
T PLN03110 57 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVQRWLRELRDH-ADSNIVIMMAGN 125 (216)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECC----------ChHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 456789999999999999999999999999999999984 455666666666665443 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+.+. ...+.+..+ .. ...+.+++|||+++.||.++|+.
T Consensus 126 K~Dl~~~~~---------------------~~~~~~~~l-~~---------------~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 126 KSDLNHLRS---------------------VAEEDGQAL-AE---------------KEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred ChhcccccC---------------------CCHHHHHHH-HH---------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999854321 111222222 11 12367889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 169 l~~~i~~~ 176 (216)
T PLN03110 169 ILLEIYHI 176 (216)
T ss_pred HHHHHHHH
Confidence 99998764
No 109
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=4.5e-20 Score=164.32 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=85.9
Q ss_pred cccceEEEEEecCCCchh----hhh----HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CC
Q 018283 183 KKSGEVYRLFDVGGQRNE----RRK----WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CF 252 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~----r~~----w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~ 252 (358)
+...+.+++|||+|++.+ ... ...++++++++|+|+|+ ++..+++....|++.+.+.. ..
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~----------~~~~S~~~~~~~~~~i~~~~~~~~ 114 (198)
T cd04142 45 SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDI----------CSPDSFHYVKLLRQQILETRPAGN 114 (198)
T ss_pred CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcccCC
Confidence 556688999999997643 122 34468999999999998 45677777777777776543 24
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.++|++|++||+|+...+. ...+++.++..+ ...+.+++|||++
T Consensus 115 ~~~piiivgNK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~e~Sak~ 158 (198)
T cd04142 115 KEPPIVVVGNKRDQQRHRF---------------------APRHVLSVLVRK---------------SWKCGYLECSAKY 158 (198)
T ss_pred CCCCEEEEEECcccccccc---------------------ccHHHHHHHHHH---------------hcCCcEEEecCCC
Confidence 5789999999999965432 111222222111 1235678999999
Q ss_pred hhhHHHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETLRR 349 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~~ 349 (358)
|.||+++|+.+.+.++.
T Consensus 159 g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 159 NWHILLLFKELLISATT 175 (198)
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 99999999999988874
No 110
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.84 E-value=2.5e-20 Score=161.56 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=87.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..++++++++|+|+|++ +..++++... |...+... ..+.|+++++
T Consensus 44 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~----------~~~s~~~~~~~~~~~l~~~--~~~~piivv~ 111 (174)
T cd04135 44 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV----------NPASFQNVKEEWVPELKEY--APNVPYLLVG 111 (174)
T ss_pred CCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence 445678899999999999999999999999999999983 4556655543 33333322 4578999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+......+. .+. ......+++..+.. .+ ....++++||+++.||+++|+
T Consensus 112 nK~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~-~~--------------~~~~~~e~Sa~~~~gi~~~f~ 167 (174)
T cd04135 112 TQIDLRDDPKTLARLN------DMK---EKPVTVEQGQKLAK-EI--------------GAHCYVECSALTQKGLKTVFD 167 (174)
T ss_pred EchhhhcChhhHHHHh------hcc---CCCCCHHHHHHHHH-Hc--------------CCCEEEEecCCcCCCHHHHHH
Confidence 9999865421110000 000 00133445554421 11 113477899999999999999
Q ss_pred HHHHHH
Q 018283 342 LVDETL 347 (358)
Q Consensus 342 ~i~~~i 347 (358)
.+.+.+
T Consensus 168 ~~~~~~ 173 (174)
T cd04135 168 EAILAI 173 (174)
T ss_pred HHHHHh
Confidence 998876
No 111
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=3.8e-20 Score=160.42 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=90.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..++++++++|+|+|++ +.+++++... |+..+... .+++|++|++
T Consensus 42 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 109 (174)
T smart00174 42 DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD----------SPASFENVKEKWYPEVKHF--CPNTPIILVG 109 (174)
T ss_pred CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence 456678999999999999999999999999999999983 5567776654 56555443 3579999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++.....+.. . .......+++..+... + ....++++||+++.||+++|+
T Consensus 110 nK~Dl~~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 110 TKLDLREDKSTLRELSK------Q---KQEPVTYEQGEALAKR-I--------------GAVKYLECSALTQEGVREVFE 165 (174)
T ss_pred cChhhhhChhhhhhhhc------c---cCCCccHHHHHHHHHH-c--------------CCcEEEEecCCCCCCHHHHHH
Confidence 99999764321111110 0 0011233444443211 0 113578899999999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
.+.+.+++
T Consensus 166 ~l~~~~~~ 173 (174)
T smart00174 166 EAIRAALN 173 (174)
T ss_pred HHHHHhcC
Confidence 99988753
No 112
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1e-19 Score=157.53 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=87.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.+||++|++.++..|..++++++++++|+|.+ +..++.....++..+.......++|+++++|
T Consensus 54 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 123 (173)
T cd04155 54 QSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSA----------DKKRLEEAGAELVELLEEEKLAGVPVLVFAN 123 (173)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 344678999999999999999999999999999999984 3456666777777776654445799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.++. ..++..+. + .+ .....+.+.++.+||++++|++++|++
T Consensus 124 K~D~~~~~-----------------------~~~~i~~~----l-~~------~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 124 KQDLATAA-----------------------PAEEIAEA----L-NL------HDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred CCCCccCC-----------------------CHHHHHHH----c-CC------cccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99985421 11111111 1 00 001235567788999999999999999
Q ss_pred HHH
Q 018283 343 VDE 345 (358)
Q Consensus 343 i~~ 345 (358)
+++
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 865
No 113
>PLN03118 Rab family protein; Provisional
Probab=99.83 E-value=1.8e-19 Score=161.81 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=88.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++.+|..|+++++++|+|+|++ +.+++.+...+|...+.. ....+.|++||+
T Consensus 58 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~----------~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~ 127 (211)
T PLN03118 58 GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVT----------RRETFTNLSDVWGKEVELYSTNQDCVKMLVG 127 (211)
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 455688999999999999999999999999999999984 456666665545443332 223467999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++. ...+++..+.. ...+.++++||+++.|++++|+
T Consensus 128 NK~Dl~~~~~---------------------i~~~~~~~~~~----------------~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 128 NKVDRESERD---------------------VSREEGMALAK----------------EHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred ECccccccCc---------------------cCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHH
Confidence 9999864321 11222322211 1225678999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.+...
T Consensus 171 ~l~~~~~~~ 179 (211)
T PLN03118 171 ELALKIMEV 179 (211)
T ss_pred HHHHHHHhh
Confidence 999998654
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=9.1e-20 Score=156.37 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=84.6
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+.+||++|++.++.+|..++++++++|||+|++ +.+++.+...|+..+.... .++|+++++||
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK 116 (164)
T cd04101 49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVS----------NKASFENCSRWVNKVRTAS--KHMPGVLVGNK 116 (164)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC--CCCCEEEEEEC
Confidence 45689999999999999999999999999999999984 4455665566666654432 46899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
.|+..+.- ....++..+ ... ..+.++++||+++.|+.++|+.+
T Consensus 117 ~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 117 MDLADKAE---------------------VTDAQAQAF-AQA---------------NQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred cccccccC---------------------CCHHHHHHH-HHH---------------cCCeEEEEeCCCCCChHHHHHHH
Confidence 99854311 111222222 111 12457889999999999999998
Q ss_pred HHHH
Q 018283 344 DETL 347 (358)
Q Consensus 344 ~~~i 347 (358)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 115
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.83 E-value=1.4e-21 Score=157.00 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=96.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+++++|||+||++||+....||+++++.++++|+ .++.+++....|+.++-.- .-..+.+.|++|
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi----------ankasfdn~~~wlsei~ey-~k~~v~l~llgn 111 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI----------ANKASFDNCQAWLSEIHEY-AKEAVALMLLGN 111 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec----------ccchhHHHHHHHHHHHHHH-HHhhHhHhhhcc
Confidence 67889999999999999999999999999999999998 5777888888888777432 223578899999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++.... . ++..-|..| .+.+.+|||++|-||+.+|..
T Consensus 112 k~d~a~er~v~~----------------d-dg~kla~~y--------------------~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 112 KCDLAHERAVKR----------------D-DGEKLAEAY--------------------GIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred ccccchhhcccc----------------c-hHHHHHHHH--------------------CCCceeccccccccHhHHHHH
Confidence 999977765320 1 222222222 367899999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
|.+.+++..+
T Consensus 155 ia~~l~k~~~ 164 (192)
T KOG0083|consen 155 IAEELKKLKM 164 (192)
T ss_pred HHHHHHHhcc
Confidence 9999987543
No 116
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.83 E-value=1.1e-19 Score=155.53 Aligned_cols=119 Identities=16% Similarity=0.227 Sum_probs=89.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.+...+..++++++++|+|+|++ +.+++.....|+..+.... .+++|+++++|
T Consensus 45 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~l~~~~~~~-~~~~pivvv~n 113 (164)
T smart00175 45 DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDIT----------NRESFENLKNWLKELREYA-DPNVVIMLVGN 113 (164)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 455578999999999999999999999999999999983 4566666666666654432 24799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+. .+.+.+.++.. + ..+.++++||+++.|+.++|+.
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~i~~l~~~ 156 (164)
T smart00175 114 KSDLEDQRQ---------------------VSREEAEAFAE-E---------------HGLPFFETSAKTNTNVEEAFEE 156 (164)
T ss_pred chhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999754210 22344444321 1 1245789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+.+
T Consensus 157 i~~~~~~ 163 (164)
T smart00175 157 LAREILK 163 (164)
T ss_pred HHHHHhh
Confidence 9988764
No 117
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=1.1e-19 Score=155.36 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=88.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.+...|..++++++++|+|+|++ +.+++.....|+..+.......++|+++++|
T Consensus 45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 45 DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVT----------RRDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 455688999999999999999999999999999999984 4556666666777665554456799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++..+.. ...+.++++||++++|++++|+.
T Consensus 115 K~D~~~~~----------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 115 KIDKENRE----------------------VTREEGLKFAR----------------KHNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred CCcccccc----------------------cCHHHHHHHHH----------------HcCCEEEEEecCCCCCHHHHHHH
Confidence 99996221 12233333321 12366889999999999999998
Q ss_pred HHHH
Q 018283 343 VDET 346 (358)
Q Consensus 343 i~~~ 346 (358)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd01863 157 LVEK 160 (161)
T ss_pred HHHh
Confidence 8764
No 118
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.83 E-value=1e-19 Score=155.03 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=84.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.+...|..++++++++|+|+|++ +.+++.....|+..+.... ..+.|+++++|
T Consensus 45 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piiiv~n 113 (162)
T cd04123 45 GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDIT----------DADSFQKVKKWIKELKQMR-GNNISLVIVGN 113 (162)
T ss_pred CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 345578999999999999999999999999999999984 4455655556665554322 22689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+- ...++..++. . ...+.++++||+++.|+.++|++
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~-~---------------~~~~~~~~~s~~~~~gi~~~~~~ 156 (162)
T cd04123 114 KIDLERQRV---------------------VSKSEAEEYA-K---------------SVGAKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred CcccccccC---------------------CCHHHHHHHH-H---------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999864321 1112222221 1 11245678999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04123 157 LAKRM 161 (162)
T ss_pred HHHHh
Confidence 98765
No 119
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=1.4e-19 Score=153.13 Aligned_cols=130 Identities=18% Similarity=0.331 Sum_probs=92.8
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ ....+.+.+||++|++.++..|..|+++++++++|+|++ +...+.....++..
T Consensus 29 ~~t~~~~~~~~------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~ 92 (159)
T cd04159 29 IPTVGFNMRKV------TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA----------DRTALEAAKNELHD 92 (159)
T ss_pred cCCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 35566555444 445689999999999999999999999999999999984 34456666677777
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.......+.|+++++||+|+..+. ...+....+.. .. . ..+.+.+
T Consensus 93 ~~~~~~~~~~p~iiv~nK~D~~~~~-----------------------~~~~~~~~~~~--~~------~---~~~~~~~ 138 (159)
T cd04159 93 LLEKPSLEGIPLLVLGNKNDLPGAL-----------------------SVDELIEQMNL--KS------I---TDREVSC 138 (159)
T ss_pred HHcChhhcCCCEEEEEeCccccCCc-----------------------CHHHHHHHhCc--cc------c---cCCceEE
Confidence 7665555688999999999985421 11111111100 00 0 1234678
Q ss_pred EEeeccChhhHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~ 345 (358)
+.+||+++.|+.++|+++.+
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCCChHHHHHHHhh
Confidence 89999999999999998864
No 120
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.83 E-value=1.7e-19 Score=155.21 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=84.0
Q ss_pred cccceEEEEEecCCCch-hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC-CCCCcEEEE
Q 018283 183 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEKTSFMLF 260 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~-~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~iilv 260 (358)
+.+.+.+++||++|++. +...+..++++++++|+|+|++ +..++.....|+..+..... ..+.|+++|
T Consensus 43 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piilv 112 (165)
T cd04146 43 DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSIT----------DRSSFDEISQLKQLIREIKKRDREIPVILV 112 (165)
T ss_pred CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 55678899999999996 3566888999999999999984 44566655555555433221 347899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh-hhHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP-KLVKKT 339 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~-~ni~~v 339 (358)
+||+|+.+.+. ...+++..+.. . ..+.++++||+++ .||+++
T Consensus 113 ~nK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 113 GNKADLLHYRQ---------------------VSTEEGEKLAS-E---------------LGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred EECCchHHhCc---------------------cCHHHHHHHHH-H---------------cCCEEEEeCCCCCchhHHHH
Confidence 99999864321 12233333311 1 1245788999999 599999
Q ss_pred HHHHHHHHH
Q 018283 340 FKLVDETLR 348 (358)
Q Consensus 340 f~~i~~~i~ 348 (358)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999988664
No 121
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.82 E-value=1.4e-19 Score=154.64 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=86.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+++||++|++.++..|..++++++++|+|+|+ ++.+++.+...|+..+.... ..+.|+++++|
T Consensus 45 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~n 113 (161)
T cd01861 45 EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDI----------TNRQSFDNTDKWIDDVRDER-GNDVIIVLVGN 113 (161)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEE
Confidence 44557899999999999999999999999999999998 35567777777777765432 23689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+.+. ...++...+.. ...+.++++||+++.|++++|.+
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~l~~~ 156 (161)
T cd01861 114 KTDLSDKRQ---------------------VSTEEGEKKAK----------------ELNAMFIETSAKAGHNVKELFRK 156 (161)
T ss_pred ChhccccCc---------------------cCHHHHHHHHH----------------HhCCEEEEEeCCCCCCHHHHHHH
Confidence 999853211 11222222211 11256788999999999999999
Q ss_pred HHHH
Q 018283 343 VDET 346 (358)
Q Consensus 343 i~~~ 346 (358)
+.+.
T Consensus 157 i~~~ 160 (161)
T cd01861 157 IASA 160 (161)
T ss_pred HHHh
Confidence 9874
No 122
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.82 E-value=1.2e-19 Score=157.55 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=85.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+++||++|++.++..|..|+++++++|||+|+ ++..++.... .|+..+... ..+.|+++++
T Consensus 44 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~~--~~~~piilv~ 111 (173)
T cd04130 44 DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSV----------VNPSSFQNISEKWIPEIRKH--NPKAPIILVG 111 (173)
T ss_pred CCEEEEEEEEECCCChhhccccccccCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence 45568899999999999999999999999999999998 4556676654 355555432 2468999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||.|+..+.-....+ ..+ ..-....+++..|..+ .....++++||+++.||+++|+
T Consensus 112 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~a~~---------------~~~~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 112 TQADLRTDVNVLIQL------ARY---GEKPVSQSRAKALAEK---------------IGACEYIECSALTQKNLKEVFD 167 (173)
T ss_pred eChhhccChhHHHHH------hhc---CCCCcCHHHHHHHHHH---------------hCCCeEEEEeCCCCCCHHHHHH
Confidence 999986431100000 000 0001334555554221 0113678999999999999998
Q ss_pred HHH
Q 018283 342 LVD 344 (358)
Q Consensus 342 ~i~ 344 (358)
.+.
T Consensus 168 ~~~ 170 (173)
T cd04130 168 TAI 170 (173)
T ss_pred HHH
Confidence 764
No 123
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=2.3e-19 Score=159.53 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=88.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++||++|+..++..|..|+++++++|||+|++ +..++.+...|+..+.......++|++|++|
T Consensus 43 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 43 GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVD----------DPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 445578999999999999999999999999999999984 4556667777777776644445799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+....- . .....+.+.... ...+.++++||+++.||.++|++
T Consensus 113 K~Dl~~~~~---~-----------------v~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 113 KADSLEEER---Q-----------------VPAKDALSTVEL---------------DWNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred ccccccccc---c-----------------ccHHHHHHHHHh---------------hcCCcEEEecCCCCCCHHHHHHH
Confidence 999864210 0 111222221110 01134678999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 158 l~~~~~ 163 (198)
T cd04147 158 LLRQAN 163 (198)
T ss_pred HHHHhh
Confidence 998764
No 124
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=4.2e-19 Score=153.16 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=86.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
....+.+.+||++|++.++..|..++.+++++|+|+|++ +..++..... |+..+.... .+.|+++++
T Consensus 43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~~--~~~pviiv~ 110 (166)
T cd01893 43 TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD----------RPSTLERIRTKWLPLIRRLG--VKVPIILVG 110 (166)
T ss_pred cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 456689999999999999999999999999999999983 4455655433 333332221 378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+.+.+.. ...++...++.+.|.. ...+++|||+++.|++++|+
T Consensus 111 nK~Dl~~~~~~--------------------~~~~~~~~~~~~~~~~-------------~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 111 NKSDLRDGSSQ--------------------AGLEEEMLPIMNEFRE-------------IETCVECSAKTLINVSEVFY 157 (166)
T ss_pred Echhcccccch--------------------hHHHHHHHHHHHHHhc-------------ccEEEEeccccccCHHHHHH
Confidence 99999654210 0122333344444421 12467899999999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
.+.+.+++
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99988764
No 125
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=4.8e-19 Score=151.35 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=89.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.+...+..++++++++++|+|++ +..++.....++..+.......+.|+++++|
T Consensus 44 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 113 (164)
T cd04139 44 DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSIT----------DMESFTATAEFREQILRVKDDDNVPLLLVGN 113 (164)
T ss_pred CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556788999999999999999999999999999999983 4456666666776666543345799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....+..++.. . ..+.++++||++++|+.++|++
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 114 KCDLEDKRQ---------------------VSSEEAANLAR-Q---------------WGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred ccccccccc---------------------cCHHHHHHHHH-H---------------hCCeEEEeeCCCCCCHHHHHHH
Confidence 999865211 11222222211 1 1245789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+.+
T Consensus 157 l~~~~~~ 163 (164)
T cd04139 157 LVREIRQ 163 (164)
T ss_pred HHHHHHh
Confidence 9887753
No 126
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.81 E-value=2.8e-19 Score=155.07 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=84.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+.+.+.+.+|||+|++.++..|..++++++++++|+|++ +.+++..... |...+.. ...+.|+++++
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~----------~~~s~~~~~~~~~~~~~~--~~~~~piilv~ 112 (175)
T cd01870 45 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH--FCPNVPIILVG 112 (175)
T ss_pred CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--hCCCCCEEEEe
Confidence 556788999999999999999999999999999999984 3445555443 3333332 23478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||.|+.........+... .+. .....++.++... + ....++++||+++.||+++|+
T Consensus 113 nK~Dl~~~~~~~~~i~~~---~~~------~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 113 NKKDLRNDEHTRRELAKM---KQE------PVKPEEGRDMANK-I--------------GAFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred eChhcccChhhhhhhhhc---cCC------CccHHHHHHHHHH-c--------------CCcEEEEeccccCcCHHHHHH
Confidence 999986432110000000 000 0122333333111 0 124678899999999999999
Q ss_pred HHHHHH
Q 018283 342 LVDETL 347 (358)
Q Consensus 342 ~i~~~i 347 (358)
++.+..
T Consensus 169 ~l~~~~ 174 (175)
T cd01870 169 MATRAA 174 (175)
T ss_pred HHHHHh
Confidence 988653
No 127
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.80 E-value=6.5e-19 Score=159.52 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=84.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhc-CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~-~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++ ......|++ +++++|+|+|++ +..++....+|+..+.......++|++||+
T Consensus 46 ~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~t----------d~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 46 DGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVT----------DRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred CCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 5567889999999998 233345666 999999999984 456677677777766554434579999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+.+++. ...+++.++ ... ..+.+++|||+++.||+++|+
T Consensus 114 NK~Dl~~~~~---------------------v~~~~~~~~-a~~---------------~~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 114 NKSDLARSRE---------------------VSVQEGRAC-AVV---------------FDCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred EChhccccce---------------------ecHHHHHHH-HHH---------------cCCeEEEecCCCCCCHHHHHH
Confidence 9999864321 112333322 111 124578899999999999999
Q ss_pred HHHHHHH
Q 018283 342 LVDETLR 348 (358)
Q Consensus 342 ~i~~~i~ 348 (358)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (221)
T cd04148 157 GIVRQIR 163 (221)
T ss_pred HHHHHHH
Confidence 9999886
No 128
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.79 E-value=1.4e-18 Score=153.15 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=89.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..+..++++++++|+|+|++ +.+++.+... |+..+... .+++|++||+
T Consensus 45 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~----------~~~s~~~~~~~~~~~i~~~--~~~~piilvg 112 (187)
T cd04129 45 DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVD----------TPDSLENVRTKWIEEVRRY--CPNVPVILVG 112 (187)
T ss_pred CCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence 445678999999999999888888899999999999983 4456666553 55555432 2469999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||.|+..+......... ..+ ...+++..+. +.+ ....+++|||+++.||+++|+
T Consensus 113 nK~Dl~~~~~~~~~~~~----~~~-------~~~~~~~~~~-~~~--------------~~~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 113 LKKDLRQDAVAKEEYRT----QRF-------VPIQQGKRVA-KEI--------------GAKKYMECSALTGEGVDDVFE 166 (187)
T ss_pred eChhhhhCccccccccc----CCc-------CCHHHHHHHH-HHh--------------CCcEEEEccCCCCCCHHHHHH
Confidence 99998543211000000 000 2334443331 111 123578999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 018283 342 LVDETLRRRHLFE 354 (358)
Q Consensus 342 ~i~~~i~~~~~~~ 354 (358)
++.+.++....++
T Consensus 167 ~l~~~~~~~~~~~ 179 (187)
T cd04129 167 AATRAALLVRKSE 179 (187)
T ss_pred HHHHHHhcccCcc
Confidence 9999887554443
No 129
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.1e-18 Score=150.28 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=82.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|++.++++|+|+|++ +.+++.....|+..+... ...+.|+++++|
T Consensus 52 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~N 120 (169)
T cd04114 52 KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDIT----------CEESFRCLPEWLREIEQY-ANNKVITILVGN 120 (169)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 455678999999999999999999999999999999984 334454444444443221 123689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+...+- .... +.+.|... ....++++||+++.|++++|++
T Consensus 121 K~D~~~~~~---------------------i~~~-----~~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 121 KIDLAERRE---------------------VSQQ-----RAEEFSDA-----------QDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred Ccccccccc---------------------cCHH-----HHHHHHHH-----------cCCeEEEeeCCCCCCHHHHHHH
Confidence 999854221 0011 11122221 1256789999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98765
No 130
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=3.7e-18 Score=148.94 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=92.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..++.+++++|+|+|++ +..++.....++..+++.....+.|+++++|
T Consensus 45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 114 (180)
T cd04137 45 KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVT----------SRKSFEVVKVIYDKILDMLGKESVPIVLVGN 114 (180)
T ss_pred CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 344577899999999999999999999999999999984 5677788888888887755445789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+. ....+...+ ... ..+.++.+||++++++.++|.+
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 115 KSDLHTQRQ---------------------VSTEEGKEL-AES---------------WGAAFLESSARENENVEEAFEL 157 (180)
T ss_pred chhhhhcCc---------------------cCHHHHHHH-HHH---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999864211 111111111 111 1145788999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+....
T Consensus 158 l~~~~~~~~ 166 (180)
T cd04137 158 LIEEIEKVE 166 (180)
T ss_pred HHHHHHHhc
Confidence 999887553
No 131
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.78 E-value=7.9e-19 Score=156.54 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=63.4
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC-------------
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP------------- 250 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~------------- 250 (358)
.+.+.+++||++|++.++..+..||++++++|+|+|++ +..+++....|+..+.+..
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvt----------n~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLT----------NRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECc----------ChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 45689999999999999999999999999999999994 5677777777777765421
Q ss_pred -----CCCCCcEEEEeeCCCchhhh
Q 018283 251 -----CFEKTSFMLFLNKFDIFEKK 270 (358)
Q Consensus 251 -----~~~~~~iilv~NK~Dl~~ek 270 (358)
...++|++|||||.|+.+++
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccccCCCCceEEEEEECccchhhc
Confidence 12468999999999997764
No 132
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=154.44 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=101.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+.+.+.+.|+||+||+.+...-..|.+++++++.|+|+ +++.+|++...+++.+...+....+|++||||
T Consensus 47 ~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysi----------td~~SF~~~~~l~~~I~r~~~~~~~PivlVGN 116 (196)
T KOG0395|consen 47 DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSI----------TDRSSFEEAKQLREQILRVKGRDDVPIILVGN 116 (196)
T ss_pred CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEE
Confidence 67788999999999999999999999999999999998 68899999999999997777777899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||...|. ...+++.++ . . ...+.+++|||+...||.++|..
T Consensus 117 K~Dl~~~R~---------------------V~~eeg~~l-a---~------------~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 117 KCDLERERQ---------------------VSEEEGKAL-A---R------------SWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred cccchhccc---------------------cCHHHHHHH-H---H------------hcCCcEEEeeccCCcCHHHHHHH
Confidence 999987643 334554444 1 0 12355889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+...+..
T Consensus 160 L~r~~~~ 166 (196)
T KOG0395|consen 160 LVREIRL 166 (196)
T ss_pred HHHHHHh
Confidence 9998865
No 133
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=3.7e-18 Score=153.71 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=87.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+.+.+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ..+.|+++++|
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~~i~lv~n 121 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVT----------SRITYKNVPNWHRDIVRV--CENIPIVLVGN 121 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 456789999999999999999999999999999999984 556666666676666432 25789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+... . .+...+ .. ...+.++++||+++.|++++|.+
T Consensus 122 K~Dl~~~~~----------------------~-~~~~~~-----~~-----------~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 122 KVDVKDRQV----------------------K-ARQITF-----HR-----------KKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred CccCccccC----------------------C-HHHHHH-----HH-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999853211 0 111121 11 12356789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+++.++.
T Consensus 163 ia~~l~~ 169 (215)
T PTZ00132 163 LARRLTN 169 (215)
T ss_pred HHHHHhh
Confidence 9988864
No 134
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.78 E-value=3.9e-18 Score=144.00 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=84.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..++++++++|+|+|.+ +.+.+.....|+..+.... ..+.|+++++|
T Consensus 45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~n 113 (159)
T cd00154 45 DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDIT----------NRESFENLDKWLKELKEYA-PENIPIILVGN 113 (159)
T ss_pred CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 345688999999999999999999999999999999984 3455666666666665532 24689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+. ...++..++... ..+.++++||+++.++.++|++
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~ 156 (159)
T cd00154 114 KIDLEDQRQ---------------------VSTEEAQQFAKE----------------NGLLFFETSAKTGENVEELFQS 156 (159)
T ss_pred ccccccccc---------------------ccHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHH
Confidence 999862110 122333333221 1356889999999999999998
Q ss_pred HH
Q 018283 343 VD 344 (358)
Q Consensus 343 i~ 344 (358)
+.
T Consensus 157 i~ 158 (159)
T cd00154 157 LA 158 (159)
T ss_pred Hh
Confidence 75
No 135
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=4.1e-18 Score=144.79 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=88.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++||++|+..+...+..++++++++|+|+|++ +..++.+...++..+.+......+|+++++|
T Consensus 43 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 112 (160)
T cd00876 43 DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSIT----------DRESFEEIKGYREQILRVKDDEDIPIVLVGN 112 (160)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 334678999999999999999999999999999999973 4566777777777776643335789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+. ...+++..+... ..+.++.+||+++.|++++|++
T Consensus 113 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 113 KCDLENERQ---------------------VSKEEGKALAKE----------------WGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCcccccce---------------------ecHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHH
Confidence 999865211 122333333221 1145788999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.|
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 136
>PLN00023 GTP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=163.64 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=60.7
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC-----------CCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-----------CFE 253 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~-----------~~~ 253 (358)
+.+.++||||+||++|+.+|..||++++++|+|+|++ +..++.....|++.+.... ...
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDIT----------dr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLS----------QRRTKTSLQKWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 5688999999999999999999999999999999995 4556666666776665431 123
Q ss_pred CCcEEEEeeCCCchhh
Q 018283 254 KTSFMLFLNKFDIFEK 269 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~e 269 (358)
++|++||+||+||..+
T Consensus 151 ~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 151 PVPYIVIGNKADIAPK 166 (334)
T ss_pred CCcEEEEEECcccccc
Confidence 5899999999999653
No 137
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.76 E-value=7.9e-18 Score=145.07 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=84.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHH-HHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL-FDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~iilv~ 261 (358)
....+.+++||++|++.+...+..+++.++++++|+|.+ +..++.+.... +..+... ..+.|+++++
T Consensus 44 ~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~ 111 (171)
T cd00157 44 DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVD----------SPSSFENVKTKWIPEIRHY--CPNVPIILVG 111 (171)
T ss_pred CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEE
Confidence 456678999999999999888899999999999999974 44555555443 3333322 2379999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||.|+.+..-....+ .+. ......+++.++... .....++++||++++|+.++|+
T Consensus 112 nK~Dl~~~~~~~~~~-------~~~---~~~v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~ 166 (171)
T cd00157 112 TKIDLRDDENTLKKL-------EKG---KEPITPEEGEKLAKE---------------IGAIGYMECSALTQEGVKEVFE 166 (171)
T ss_pred ccHHhhhchhhhhhc-------ccC---CCccCHHHHHHHHHH---------------hCCeEEEEeecCCCCCHHHHHH
Confidence 999997643211000 000 011233444443221 1123688999999999999999
Q ss_pred HHHH
Q 018283 342 LVDE 345 (358)
Q Consensus 342 ~i~~ 345 (358)
.+.+
T Consensus 167 ~i~~ 170 (171)
T cd00157 167 EAIR 170 (171)
T ss_pred HHhh
Confidence 8865
No 138
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=2.1e-17 Score=144.34 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=98.7
Q ss_pred eccCceee----EeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283 166 VRTTGVVE----IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241 (358)
Q Consensus 166 ~~T~gi~e----~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~ 241 (358)
.||.|+.. +.+ +.+.+.+.||||+||++++.+|..||++++++|+|+|+ ++..++.....
T Consensus 10 ~~Tig~~~~~~~~~~------~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~----------t~~~sf~~~~~ 73 (176)
T PTZ00099 10 QSTIGIDFLSKTLYL------DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI----------TNRQSFENTTK 73 (176)
T ss_pred CCccceEEEEEEEEE------CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEEC----------CCHHHHHHHHH
Confidence 46777544 334 56779999999999999999999999999999999998 45667878778
Q ss_pred HHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 018283 242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDR 321 (358)
Q Consensus 242 ~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~ 321 (358)
|+..+.... ..++|++||+||+||.+.+. ...+++..+.. ..
T Consensus 74 w~~~i~~~~-~~~~piilVgNK~DL~~~~~---------------------v~~~e~~~~~~----------------~~ 115 (176)
T PTZ00099 74 WIQDILNER-GKDVIIALVGNKTDLGDLRK---------------------VTYEEGMQKAQ----------------EY 115 (176)
T ss_pred HHHHHHHhc-CCCCeEEEEEECcccccccC---------------------CCHHHHHHHHH----------------Hc
Confidence 888776543 25789999999999964321 22344443311 11
Q ss_pred eEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 322 VFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 322 ~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
.+.+++|||++++||.++|+++.+.+.+
T Consensus 116 ~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 116 NTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2456889999999999999999988854
No 139
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.6e-18 Score=146.17 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=93.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||+|||+.|......||++|++.++|++- +++.+|+..++|.+.+.+. ...+|.++|-|
T Consensus 65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFST----------TDr~SFea~~~w~~kv~~e--~~~IPtV~vqN 132 (246)
T KOG4252|consen 65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFST----------TDRYSFEATLEWYNKVQKE--TERIPTVFVQN 132 (246)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEec----------ccHHHHHHHHHHHHHHHHH--hccCCeEEeec
Confidence 45567788999999999999999999999999999986 6889999999999998664 34799999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||.+.-... .| .++..++- .....|.||++..-||..+|..
T Consensus 133 KIDlveds~~~----------------~~--evE~lak~-------------------l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 133 KIDLVEDSQMD----------------KG--EVEGLAKK-------------------LHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred cchhhHhhhcc----------------hH--HHHHHHHH-------------------hhhhhhhhhhhhhhhhHHHHHH
Confidence 99998752211 11 12222221 1233567999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+++.+.+..
T Consensus 176 LaeK~~q~~ 184 (246)
T KOG4252|consen 176 LAEKLTQQK 184 (246)
T ss_pred HHHHHHHHH
Confidence 999887543
No 140
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=143.61 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=85.5
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
.+.+.+|||+||+.++.+|..||.+++++++|+|.+ ...++.+....+...+......+.|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~----------~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDST----------LRESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecc----------cchhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 688999999999999999999999999999999973 4455555544444333332224689999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc--ChhhHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL--DPKLVKKTFKLV 343 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~--d~~ni~~vf~~i 343 (358)
++.+......+... + ............ .... . ..... ++.+||+ .+.+|..+|..+
T Consensus 123 l~~~~~~~~~~~~~--~-------~~~~~~~~~~~~------~~~~---~---~~~~~-~~~~s~~~~~~~~v~~~~~~~ 180 (219)
T COG1100 123 LFDEQSSSEEILNQ--L-------NREVVLLVLAPK------AVLP---E---VANPA-LLETSAKSLTGPNVNELFKEL 180 (219)
T ss_pred cccchhHHHHHHhh--h-------hcCcchhhhHhH------Hhhh---h---hcccc-eeEeecccCCCcCHHHHHHHH
Confidence 98764321100000 0 000011111111 1000 0 01122 6789999 999999999999
Q ss_pred HHHHHHh
Q 018283 344 DETLRRR 350 (358)
Q Consensus 344 ~~~i~~~ 350 (358)
...+...
T Consensus 181 ~~~~~~~ 187 (219)
T COG1100 181 LRKLLEE 187 (219)
T ss_pred HHHHHHh
Confidence 9888643
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.71 E-value=2.6e-16 Score=134.39 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=73.3
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
+..+.+|||+|++.+...+..++++++++|+|+|.++ ....++...+..+ .. ....|+++++||+|
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~~--~~~~~~ilv~NK~D 115 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-EL--LGIKRGLVVLTKAD 115 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-HH--hCCCcEEEEEECcc
Confidence 5689999999999998888889999999999999742 1111222222211 11 12249999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+..+. ......+.+.+.+... ....+.++.+||++++|++++|+.+..
T Consensus 116 l~~~~-----------------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 116 LVDED-----------------------WLELVEEEIRELLAGT---------FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ccCHH-----------------------HHHHHHHHHHHHHHhc---------CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 96431 0111122222222210 002356788999999999999998753
No 142
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.69 E-value=2.1e-17 Score=144.27 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=90.8
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEee
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++.+.+.+|||+||+.|.++|+-.|.++|.+|.||++ .+..++++. -.|+-++..+ .+++|++|||+
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv----------~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGt 117 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSV----------VSPESFENVKSKWIPEIKHH--CPNVPIILVGT 117 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEc----------CChhhHHHHHhhhhHHHHhh--CCCCCEEEEee
Confidence 7889999999999999999998899999999999998 466777775 4455555443 36899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.||..+......+. .+. ..+...+++.. +.++- .-+.++++||++..|++++|+.
T Consensus 118 k~DLr~d~~~~~~l~-----~~~----~~~Vt~~~g~~-lA~~i--------------ga~~y~EcSa~tq~~v~~vF~~ 173 (198)
T KOG0393|consen 118 KADLRDDPSTLEKLQ-----RQG----LEPVTYEQGLE-LAKEI--------------GAVKYLECSALTQKGVKEVFDE 173 (198)
T ss_pred hHHhhhCHHHHHHHH-----hcc----CCcccHHHHHH-HHHHh--------------CcceeeeehhhhhCCcHHHHHH
Confidence 999985421100010 000 01122333322 11111 1256889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
.....+.
T Consensus 174 a~~~~l~ 180 (198)
T KOG0393|consen 174 AIRAALR 180 (198)
T ss_pred HHHHHhc
Confidence 8888765
No 143
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.67 E-value=1.4e-15 Score=132.23 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=76.2
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.+.+.+++|||+|++.++..|..++++++++|+|+|.++- ... .....+..+.. .++|+++++||
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~~~-~~~~~~~~~~~----~~~~iiiv~NK 128 (179)
T cd01890 64 GQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG----------VEA-QTLANFYLALE----NNLEIIPVINK 128 (179)
T ss_pred CCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC----------ccH-hhHHHHHHHHH----cCCCEEEEEEC
Confidence 4678899999999999999999999999999999998531 111 11222222222 36799999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.+.. ..+..+.+.+.+. . ....++.+||++++||+++|+++
T Consensus 129 ~Dl~~~~------------------------~~~~~~~~~~~~~-------~-----~~~~~~~~Sa~~g~gi~~l~~~l 172 (179)
T cd01890 129 IDLPSAD------------------------PERVKQQIEDVLG-------L-----DPSEAILVSAKTGLGVEDLLEAI 172 (179)
T ss_pred CCCCcCC------------------------HHHHHHHHHHHhC-------C-----CcccEEEeeccCCCCHHHHHHHH
Confidence 9985321 0111111222110 0 11236789999999999999999
Q ss_pred HHHH
Q 018283 344 DETL 347 (358)
Q Consensus 344 ~~~i 347 (358)
.+.+
T Consensus 173 ~~~~ 176 (179)
T cd01890 173 VERI 176 (179)
T ss_pred HhhC
Confidence 8754
No 144
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.2e-16 Score=130.12 Aligned_cols=130 Identities=21% Similarity=0.327 Sum_probs=97.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+++|+.+|.||+..-|+.|..||..+++++|.||. .+.+|+.++...++.++....+.++|+++++|
T Consensus 60 ~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda----------~d~er~~es~~eld~ll~~e~la~vp~lilgn 129 (193)
T KOG0077|consen 60 SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA----------YDQERFAESKKELDALLSDESLATVPFLILGN 129 (193)
T ss_pred eecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh----------hhHHHhHHHHHHHHHHHhHHHHhcCcceeecc
Confidence 56889999999999999999999999999999999997 67899999999999999988888999999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhc--CCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS--TAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~--~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
|+|...+-- ++-..|-..-+..+-... .......|++..+.+|...+.+--+.|
T Consensus 130 KId~p~a~s------------------------e~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~f 185 (193)
T KOG0077|consen 130 KIDIPYAAS------------------------EDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGF 185 (193)
T ss_pred cccCCCccc------------------------HHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceee
Confidence 999865410 111112111121111000 001113577888889999988888888
Q ss_pred HHHHHH
Q 018283 341 KLVDET 346 (358)
Q Consensus 341 ~~i~~~ 346 (358)
.++...
T Consensus 186 kwl~qy 191 (193)
T KOG0077|consen 186 KWLSQY 191 (193)
T ss_pred eehhhh
Confidence 776543
No 145
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.65 E-value=3.6e-15 Score=128.24 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=73.0
Q ss_pred cccceEEEEEecCCCch----hhhhHh-----hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRN----ERRKWI-----HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~----~r~~w~-----~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
....+.+++|||+|+.. .+..|. .....++++|+|+|.++. ..-++.+...++..+... ..
T Consensus 43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~--------~~~~~~~~~~~~~~l~~~--~~ 112 (168)
T cd01897 43 DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSET--------CGYSLEEQLSLFEEIKPL--FK 112 (168)
T ss_pred ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcc--------cccchHHHHHHHHHHHhh--cC
Confidence 44568999999999842 111111 112236899999998531 111334445566655432 24
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++++||+|+.+.. ...+.. ++.. ...+.++.|||+++
T Consensus 113 ~~pvilv~NK~Dl~~~~-----------------------~~~~~~-----~~~~-----------~~~~~~~~~Sa~~~ 153 (168)
T cd01897 113 NKPVIVVLNKIDLLTFE-----------------------DLSEIE-----EEEE-----------LEGEEVLKISTLTE 153 (168)
T ss_pred cCCeEEEEEccccCchh-----------------------hHHHHH-----Hhhh-----------hccCceEEEEeccc
Confidence 78999999999995421 111111 1111 12356789999999
Q ss_pred hhHHHHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDETLR 348 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~ 348 (358)
+|++++|+++.+.++
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (168)
T cd01897 154 EGVDEVKNKACELLL 168 (168)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999988763
No 146
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.65 E-value=4.2e-15 Score=132.85 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=61.6
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCC-cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC--CCCCcEEEE
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFMLF 260 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~-~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~iilv 260 (358)
.+...+.+||++||.++|..|..|++++ +++|||+|.++ ..+.+.++..++..++.... ..++|++|+
T Consensus 45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~---------~~~~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSAT---------FQKNLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECcc---------chhHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 3467899999999999999999999999 99999999852 12566777777766654332 247899999
Q ss_pred eeCCCchhh
Q 018283 261 LNKFDIFEK 269 (358)
Q Consensus 261 ~NK~Dl~~e 269 (358)
+||+|++.+
T Consensus 116 ~NK~Dl~~a 124 (203)
T cd04105 116 CNKQDLFTA 124 (203)
T ss_pred ecchhhccc
Confidence 999999754
No 147
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.63 E-value=6.7e-15 Score=126.34 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=76.9
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+..+.+|||+|+..++..|..++..++++++|+|.++.+ .......+..+.. .++|+++++||+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~ 112 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKI 112 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEce
Confidence 4678999999999999999999999999999999986321 1112222222222 367999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+..+.. ....+... .+..... .. ..+.+.++.+||++++|+.++|+++.
T Consensus 113 Dl~~~~~---------------------~~~~~~~~----~~~~~~~--~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 113 DKPNANP---------------------ERVKNELS----ELGLQGE--DE---WGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred ecccccH---------------------HHHHHHHH----Hhhcccc--cc---ccCcCcEEEeecccCCCHHHHHHHHH
Confidence 9853211 01111111 1110000 00 12346678999999999999999987
Q ss_pred HHH
Q 018283 345 ETL 347 (358)
Q Consensus 345 ~~i 347 (358)
+..
T Consensus 163 ~~~ 165 (168)
T cd01887 163 LLA 165 (168)
T ss_pred Hhh
Confidence 654
No 148
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=1.5e-14 Score=128.99 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=67.4
Q ss_pred eEEEEEecCCCc---------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283 187 EVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 257 (358)
Q Consensus 187 ~~l~i~D~~Gq~---------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i 257 (358)
..+.+|||+|+. .++..+ ..+.+++++++|+|.++. ........+..++..+ ...+.|+
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~-------~~~~~~~~~~~~l~~~----~~~~~~v 156 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDP-------DYEEQIETVEKVLKEL----GAEDIPM 156 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCC-------ChhhHHHHHHHHHHHc----CcCCCCE
Confidence 378999999983 233333 346789999999998521 1111222233333332 2346899
Q ss_pred EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
++|+||+|+..+.. .. . .+. .....++++||+++.|+.
T Consensus 157 iiV~NK~Dl~~~~~-----------------------~~---~----~~~------------~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 157 ILVLNKIDLLDDEE-----------------------LE---E----RLE------------AGRPDAVFISAKTGEGLD 194 (204)
T ss_pred EEEEEccccCChHH-----------------------HH---H----Hhh------------cCCCceEEEEcCCCCCHH
Confidence 99999999864321 00 0 000 122457889999999999
Q ss_pred HHHHHHHHH
Q 018283 338 KTFKLVDET 346 (358)
Q Consensus 338 ~vf~~i~~~ 346 (358)
++|+++.+.
T Consensus 195 ~l~~~L~~~ 203 (204)
T cd01878 195 ELLEAIEEL 203 (204)
T ss_pred HHHHHHHhh
Confidence 999998764
No 149
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=8.5e-15 Score=122.85 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=74.1
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+.+.+||++|+..++..|..+++.+.++++++|++.+- ..+.+.. .+...+... ...+.|+++++||.
T Consensus 49 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v---------~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~ 118 (161)
T TIGR00231 49 TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILV---------LDVEEILEKQTKEIIHH-AESNVPIILVGNKI 118 (161)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeee---------hhhhhHhHHHHHHHHHh-cccCCcEEEEEEcc
Confidence 378999999999999999999999999999999986331 2222333 222233221 11278999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+....+ .......+.. .....++.+||+++.|+.++|+.+.
T Consensus 119 D~~~~~~---------------------------~~~~~~~~~~-----------~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 119 DLRDAKL---------------------------KTHVAFLFAK-----------LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred cCCcchh---------------------------hHHHHHHHhh-----------ccCCceEEeecCCCCCHHHHHHHhh
Confidence 9854321 0011111111 1123478899999999999999864
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=8.4e-15 Score=130.21 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=71.6
Q ss_pred EEEEEecCC-----------CchhhhhHhhhhc-C---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 188 VYRLFDVGG-----------QRNERRKWIHLFE-G---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 188 ~l~i~D~~G-----------q~~~r~~w~~y~~-~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
.+.+|||+| +++++..|..|+. + ++++++|+|.+.+......-...+.+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 589999999 7889999999986 3 46888888875432211000000111111222332221
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.++|+++|+||+|+..++ .+....+.+.+. +. .+- ......++.|||++
T Consensus 129 ~~~p~iiv~NK~Dl~~~~-------------------------~~~~~~~~~~~~-~~----~~~-~~~~~~~~~~SA~~ 177 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR-------------------------DEVLDEIAERLG-LY----PPW-RQWQDIIAPISAKK 177 (201)
T ss_pred cCCCeEEEEECccccCcH-------------------------HHHHHHHHHHhc-CC----ccc-cccCCcEEEEeccc
Confidence 268999999999985432 011111122211 00 000 00012467899999
Q ss_pred hhhHHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETLR 348 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~ 348 (358)
+ ||+++|+++.+.+-
T Consensus 178 g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 178 G-GIEELKEAIRKRLH 192 (201)
T ss_pred C-CHHHHHHHHHHhhc
Confidence 9 99999999988763
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=2.9e-14 Score=126.32 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=54.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..+.+.+.+|||+|++.++..|..|+++++++|+|+|.++ . .......++..+.. .++|+++++|
T Consensus 61 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~--------~---~~~~~~~~~~~~~~----~~~p~iiv~N 125 (194)
T cd01891 61 TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE--------G---PMPQTRFVLKKALE----LGLKPIVVIN 125 (194)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC--------C---ccHHHHHHHHHHHH----cCCCEEEEEE
Confidence 5567899999999999999999999999999999999852 1 11222233443332 2679999999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|+..
T Consensus 126 K~Dl~~ 131 (194)
T cd01891 126 KIDRPD 131 (194)
T ss_pred CCCCCC
Confidence 999864
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.61 E-value=2.9e-14 Score=124.48 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=81.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
......+.+||++|+..++..|..++++++++++|+|.++. . ......++..+.. .+.|+++++|
T Consensus 58 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~---~~~~~~~~~~~~~----~~~~i~iv~n 122 (189)
T cd00881 58 EWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG--------V---QPQTREHLRIARE----GGLPIIVAIN 122 (189)
T ss_pred eeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------C---cHHHHHHHHHHHH----CCCCeEEEEE
Confidence 33467899999999999999999999999999999997521 1 1112223333322 3689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhh--cCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQ--STAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~--~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
|+|+..+ .......+++.+.+...... ............++.+||+++.|+.++|
T Consensus 123 K~D~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~ 179 (189)
T cd00881 123 KIDRVGE-----------------------EDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELL 179 (189)
T ss_pred CCCCcch-----------------------hcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHH
Confidence 9998642 11222333333333221000 0000000134678889999999999999
Q ss_pred HHHHHHH
Q 018283 341 KLVDETL 347 (358)
Q Consensus 341 ~~i~~~i 347 (358)
+.+.+.+
T Consensus 180 ~~l~~~l 186 (189)
T cd00881 180 EAIVEHL 186 (189)
T ss_pred HHHHhhC
Confidence 9988765
No 153
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.60 E-value=2.3e-14 Score=123.31 Aligned_cols=115 Identities=14% Similarity=0.215 Sum_probs=68.9
Q ss_pred eEEEEEecCCCc----hhhhhHhhh---hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283 187 EVYRLFDVGGQR----NERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 187 ~~l~i~D~~Gq~----~~r~~w~~y---~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil 259 (358)
..+.+|||+|+. ..+.++..| +++++++|+|+|.++-+ .....+..+.+.+.... +...++|+++
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~------~~~~~~~~~~~~l~~~~--~~~~~~p~iv 119 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD------DPVEDYKTIRNELELYN--PELLEKPRIV 119 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC------CHHHHHHHHHHHHHHhC--ccccccccEE
Confidence 489999999973 222334444 44699999999985210 11223333333333321 2234789999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
|+||+|+.... ...+ ++...... .....++.+||+++.+++++
T Consensus 120 v~NK~Dl~~~~-----------------------~~~~---~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 120 VLNKIDLLDEE-----------------------ELFE---LLKELLKE-----------LWGKPVFPISALTGEGLDEL 162 (170)
T ss_pred EEEchhcCCch-----------------------hhHH---HHHHHHhh-----------CCCCCEEEEecCCCCCHHHH
Confidence 99999985421 1111 11111110 01245678999999999999
Q ss_pred HHHHHHH
Q 018283 340 FKLVDET 346 (358)
Q Consensus 340 f~~i~~~ 346 (358)
|+++.+.
T Consensus 163 ~~~i~~~ 169 (170)
T cd01898 163 LRKLAEL 169 (170)
T ss_pred HHHHHhh
Confidence 9998764
No 154
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.59 E-value=2.7e-14 Score=126.29 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=72.4
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.+...+.+|||+|+..+.+........++++|+|+|.++.. ... ..+...+ ... .+.|+++++||
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~-------~~~-~~~~~~~----~~~---~~~~~iiv~NK 129 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI-------QTQ-TAECLVI----GEI---LCKKLIVVLNK 129 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-------cHH-HHHHHHH----HHH---cCCCEEEEEEC
Confidence 34688999999999754322223345678999999975210 011 1111111 111 15699999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+....... ...++..+++...+... ....+.++.+||++++|+.++++++
T Consensus 130 ~Dl~~~~~~~-------------------~~~~~~~~~l~~~~~~~---------~~~~~~vi~iSa~~g~gi~~L~~~l 181 (192)
T cd01889 130 IDLIPEEERE-------------------RKIEKMKKKLQKTLEKT---------RFKNSPIIPVSAKPGGGEAELGKDL 181 (192)
T ss_pred cccCCHHHHH-------------------HHHHHHHHHHHHHHHhc---------CcCCCCEEEEeccCCCCHHHHHHHH
Confidence 9986321000 11223333333333221 0123567889999999999999999
Q ss_pred HHHHH
Q 018283 344 DETLR 348 (358)
Q Consensus 344 ~~~i~ 348 (358)
.+.|.
T Consensus 182 ~~~~~ 186 (192)
T cd01889 182 NNLIV 186 (192)
T ss_pred Hhccc
Confidence 98875
No 155
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.6e-15 Score=127.19 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=95.5
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|+|+...+..+.+ +.+.++|..|||+||+.+-.+-..||-..+|+|+++|++ ++.....+-.|.+.
T Consensus 40 ~at~Gv~~~pl~f~t--n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVt----------sr~t~~n~~rwhrd 107 (216)
T KOG0096|consen 40 PATLGVEVHPLLFDT--NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVT----------SRFTYKNVPRWHRD 107 (216)
T ss_pred cCcceeEEeeeeeec--ccCcEEEEeeecccceeecccccccEEecceeEEEeeee----------ehhhhhcchHHHHH
Confidence 366776654433322 334699999999999999999999999999999999984 44555555666666
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
.+... .++||+++|||.|....+....++.-. ..+.+.+
T Consensus 108 ~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~~---------------------------------------rkknl~y 146 (216)
T KOG0096|consen 108 LVRVR--ENIPIVLCGNKVDIKARKVKAKPVSFH---------------------------------------RKKNLQY 146 (216)
T ss_pred HHHHh--cCCCeeeeccceeccccccccccceee---------------------------------------eccccee
Confidence 65432 368999999999987655433222100 1355788
Q ss_pred EEeeccChhhHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
|+.||+.+-|.+.-|.+++..+.
T Consensus 147 ~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 147 YEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred EEeecccccccccchHHHhhhhc
Confidence 99999999999999999888764
No 156
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=1.4e-14 Score=121.26 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=61.9
Q ss_pred EEEecCCCc-----hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 190 RLFDVGGQR-----NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 190 ~i~D~~Gq~-----~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+|||+|+. .++.... ++++++++|+|+|+++-.. +.. ..+. ... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s----------~~~-~~~~-~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPES----------RFP-PGFA-SIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCc----------CCC-hhHH-Hhc------cCCeEEEEEee
Confidence 689999983 3444433 5789999999999864321 111 1222 111 23999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+.+.. ...+++.+++... ....++.+||++++|++++|+++.
T Consensus 99 Dl~~~~----------------------~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 99 DLAEAD----------------------VDIERAKELLETA---------------GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ccCCcc----------------------cCHHHHHHHHHHc---------------CCCcEEEEecCCCCCHHHHHHHHh
Confidence 985311 1223333332211 012467899999999999999874
No 157
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.57 E-value=1.2e-14 Score=117.95 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=53.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH---HHHHHHHHcCCCCCCCcEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET---KELFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~~~~iil 259 (358)
......+.+||++|++.+...|..++.+++++|+|+|++ +..++.+. +.|+..+-. ...++|++|
T Consensus 46 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s----------~~~s~~~~~~~~~~l~~~~~--~~~~~piil 113 (119)
T PF08477_consen 46 DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLS----------DPESLEYLSQLLKWLKNIRK--RDKNIPIIL 113 (119)
T ss_dssp TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECC----------GHHHHHHHHHHHHHHHHHHH--HSSCSEEEE
T ss_pred cCCceEEEEEecCccceecccccchhhcCcEEEEEEcCC----------ChHHHHHHHHHHHHHHHHHc--cCCCCCEEE
Confidence 444555999999999999999998999999999999985 33444444 455555543 234699999
Q ss_pred EeeCCC
Q 018283 260 FLNKFD 265 (358)
Q Consensus 260 v~NK~D 265 (358)
++||.|
T Consensus 114 v~nK~D 119 (119)
T PF08477_consen 114 VGNKSD 119 (119)
T ss_dssp EEE-TC
T ss_pred EEeccC
Confidence 999998
No 158
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.54 E-value=1.3e-13 Score=123.22 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=75.1
Q ss_pred eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
..+.+|||+|++.+..-+.....+++++|+|+|.++- .......+.+..+.. ....|+++++||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~-------~~~~~t~~~l~~~~~------~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP-------CPQPQTSEHLAALEI------MGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC-------CCCcchHHHHHHHHH------cCCCcEEEEEEchhc
Confidence 6789999999999999998889999999999998520 001111222222211 112579999999998
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
..+. ...+..+.+.+.+.... ...+.++.+||++++||+++|+.+.+.
T Consensus 150 ~~~~-----------------------~~~~~~~~i~~~~~~~~---------~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 150 VKEE-----------------------QALENYEQIKKFVKGTI---------AENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred cCHH-----------------------HHHHHHHHHHHHHhccc---------cCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 5421 11222233333332110 123557889999999999999998775
Q ss_pred H
Q 018283 347 L 347 (358)
Q Consensus 347 i 347 (358)
+
T Consensus 198 l 198 (203)
T cd01888 198 I 198 (203)
T ss_pred C
Confidence 4
No 159
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.53 E-value=1.5e-13 Score=113.79 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=79.0
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.....+.+||++|+..+...|..+++.++++|+|+|++ ....+.....++..........++|+++++||
T Consensus 42 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk 111 (157)
T cd00882 42 GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT----------DRESFENVKEWLLLILINKEGENIPIILVGNK 111 (157)
T ss_pred CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhhccCCCcEEEEEec
Confidence 34678999999999999999999999999999999984 23344444444222333334457999999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+..... ........ .+. ....+.++.+||+++.++.++|+++
T Consensus 112 ~D~~~~~~---------------------~~~~~~~~----~~~-----------~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 112 IDLPEERV---------------------VSEEELAE----QLA-----------KELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred cccccccc---------------------hHHHHHHH----HHH-----------hhcCCcEEEEecCCCCChHHHHHHH
Confidence 99854311 00111000 010 0123678899999999999999987
Q ss_pred H
Q 018283 344 D 344 (358)
Q Consensus 344 ~ 344 (358)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 160
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.52 E-value=1.3e-12 Score=115.10 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=83.0
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.....+.++|++|+..|........+.+|++|+|+|..+ . -.....+.+..+.. .+.|+++++||
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~---------g--~~~~~~~~l~~~~~----~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND---------G--IQPQTEEHLKILRE----LGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT---------B--STHHHHHHHHHHHH----TT-SEEEEEET
T ss_pred ccccceeecccccccceeecccceecccccceeeeeccc---------c--cccccccccccccc----cccceEEeeee
Confidence 678899999999999998888888999999999999731 1 11223344444433 26789999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+...+ +.+..+-+...|...+ ..+ ....+.++.+||+.+.|+.++++.+
T Consensus 132 ~D~~~~~------------------------~~~~~~~~~~~l~~~~---~~~--~~~~~~vi~~Sa~~g~gi~~Ll~~l 182 (188)
T PF00009_consen 132 MDLIEKE------------------------LEEIIEEIKEKLLKEY---GEN--GEEIVPVIPISALTGDGIDELLEAL 182 (188)
T ss_dssp CTSSHHH------------------------HHHHHHHHHHHHHHHT---TST--TTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred ccchhhh------------------------HHHHHHHHHHHhcccc---ccC--ccccceEEEEecCCCCCHHHHHHHH
Confidence 9997433 2333444444443221 110 0135788899999999999999988
Q ss_pred HHHH
Q 018283 344 DETL 347 (358)
Q Consensus 344 ~~~i 347 (358)
.+.+
T Consensus 183 ~~~~ 186 (188)
T PF00009_consen 183 VELL 186 (188)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 8754
No 161
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=2.2e-13 Score=115.58 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=71.0
Q ss_pred cceEEEEEecCCCchhhh------hHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283 185 SGEVYRLFDVGGQRNERR------KWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 256 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~------~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 256 (358)
.+..+.+|||+|++.+.. .+..++. +++++|+|+|.++ .+. ...++..+.. .++|
T Consensus 41 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~~~~----~~~~ 103 (158)
T cd01879 41 GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQLLE----LGLP 103 (158)
T ss_pred CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHHHHH----cCCC
Confidence 346899999999987764 4777775 9999999999852 111 2233334332 2589
Q ss_pred EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283 257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336 (358)
Q Consensus 257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni 336 (358)
+++++||+|+..... .....+.+...+ .+.++.+||.++.|+
T Consensus 104 ~iiv~NK~Dl~~~~~-----------------------~~~~~~~~~~~~---------------~~~~~~iSa~~~~~~ 145 (158)
T cd01879 104 VVVALNMIDEAEKRG-----------------------IKIDLDKLSELL---------------GVPVVPTSARKGEGI 145 (158)
T ss_pred EEEEEehhhhccccc-----------------------chhhHHHHHHhh---------------CCCeEEEEccCCCCH
Confidence 999999999854311 000011111111 145678999999999
Q ss_pred HHHHHHHHHH
Q 018283 337 KKTFKLVDET 346 (358)
Q Consensus 337 ~~vf~~i~~~ 346 (358)
..+|+.+.+.
T Consensus 146 ~~l~~~l~~~ 155 (158)
T cd01879 146 DELKDAIAEL 155 (158)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=2.7e-13 Score=136.11 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=72.1
Q ss_pred ccceEEEEEecCCCc--------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 184 KSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~--------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
..+..+.+|||+|++ .++..+..+++++|++|||+|.++- ......+...++. . .++
T Consensus 83 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~--------~s~~~~~i~~~l~----~---~~~ 147 (472)
T PRK03003 83 WNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVG--------ATATDEAVARVLR----R---SGK 147 (472)
T ss_pred ECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHH----H---cCC
Confidence 345678999999986 3566788899999999999998521 1111122222222 1 368
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|++||+||+|+.... . +. .. +..+ + -. ..+.+||+++.|
T Consensus 148 piilV~NK~Dl~~~~----------------------~--~~-~~-----~~~~-----g---~~---~~~~iSA~~g~g 186 (472)
T PRK03003 148 PVILAANKVDDERGE----------------------A--DA-AA-----LWSL-----G---LG---EPHPVSALHGRG 186 (472)
T ss_pred CEEEEEECccCCccc----------------------h--hh-HH-----HHhc-----C---CC---CeEEEEcCCCCC
Confidence 999999999985310 0 00 01 1111 0 01 135799999999
Q ss_pred HHHHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETLRR 349 (358)
Q Consensus 336 i~~vf~~i~~~i~~ 349 (358)
|.++|+++.+.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988754
No 163
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.50 E-value=7.2e-13 Score=131.41 Aligned_cols=70 Identities=24% Similarity=0.280 Sum_probs=48.7
Q ss_pred cccceEEEEEecCCCchhhhh--------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~--------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
..++..+.+|||+|++..... ...|+++++++|+|+|.++ ..+..+. ++..+.. .+
T Consensus 247 ~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~----~~ 310 (442)
T TIGR00450 247 ELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK----SK 310 (442)
T ss_pred EECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh----CC
Confidence 445678899999999765433 2468899999999999852 2222222 4444322 36
Q ss_pred CcEEEEeeCCCchh
Q 018283 255 TSFMLFLNKFDIFE 268 (358)
Q Consensus 255 ~~iilv~NK~Dl~~ 268 (358)
+|+++|+||+|+.+
T Consensus 311 ~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 311 KPFILVLNKIDLKI 324 (442)
T ss_pred CCEEEEEECccCCC
Confidence 79999999999853
No 164
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.50 E-value=7.5e-13 Score=127.66 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred cceEEEEEecCCC---------chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 185 SGEVYRLFDVGGQ---------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 185 ~~~~l~i~D~~Gq---------~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
++..+.+|||+|. +.|++.+ .++.++|++|+|+|.|+-+ ....+..+..++..+ ...+.
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~-------~~~~~~~~~~~L~~l----~~~~~ 302 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPD-------REEQIEAVEKVLEEL----GAEDI 302 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCc-------hHHHHHHHHHHHHHh----ccCCC
Confidence 3468999999998 3455444 3588999999999986311 111222223333333 22468
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++|+||+|+.... .+. .+ .. ....++.+||++++|
T Consensus 303 piIlV~NK~Dl~~~~-----------------------~v~----~~----~~------------~~~~~i~iSAktg~G 339 (351)
T TIGR03156 303 PQLLVYNKIDLLDEP-----------------------RIE----RL----EE------------GYPEAVFVSAKTGEG 339 (351)
T ss_pred CEEEEEEeecCCChH-----------------------hHH----HH----Hh------------CCCCEEEEEccCCCC
Confidence 999999999985321 010 00 00 001357799999999
Q ss_pred HHHHHHHHHHH
Q 018283 336 VKKTFKLVDET 346 (358)
Q Consensus 336 i~~vf~~i~~~ 346 (358)
|+++++.+.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 165
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.50 E-value=3.3e-13 Score=133.95 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=75.9
Q ss_pred ccceEEEEEecCCCchhhhhH-----------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 184 KSGEVYRLFDVGGQRNERRKW-----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w-----------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
..+..+.+|||+|+++.+..+ ..+++.+|++|+|+|.++ .-. .....++..+..
T Consensus 217 ~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~-~~~~~~~~~~~~---- 281 (429)
T TIGR03594 217 RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GIT-EQDLRIAGLILE---- 281 (429)
T ss_pred ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH----
Confidence 344578999999987665443 346889999999999741 111 122334444433
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.+.|+++++||+|+.+.. ...++..+.+...+.. -..+.++++||++
T Consensus 282 ~~~~iiiv~NK~Dl~~~~----------------------~~~~~~~~~~~~~~~~-----------~~~~~vi~~SA~~ 328 (429)
T TIGR03594 282 AGKALVIVVNKWDLVKDE----------------------KTREEFKKELRRKLPF-----------LDFAPIVFISALT 328 (429)
T ss_pred cCCcEEEEEECcccCCCH----------------------HHHHHHHHHHHHhccc-----------CCCCceEEEeCCC
Confidence 268999999999986210 1122333333333221 1235678899999
Q ss_pred hhhHHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETLR 348 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~ 348 (358)
+.|+.++|+++.+...
T Consensus 329 g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 166
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.49 E-value=4.5e-13 Score=128.08 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=73.7
Q ss_pred ceEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283 186 GEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 186 ~~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii 258 (358)
...+.+||++|+. .....|..+++.++++|||+|+++.+. ....+.+..+.+.+... .+.+.+.|++
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~----~~~~e~l~~l~~EL~~~--~~~l~~kp~I 277 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG----RDPIEDYEIIRNELKKY--SPELAEKPRI 277 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc----cCHHHHHHHHHHHHHHh--hhhhccCCEE
Confidence 3678999999984 234455566678999999999864310 01122333333333332 2334578999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
||+||+|+..+. ..++..+.+.+.+ .+.++.+||+++++|++
T Consensus 278 IV~NK~DL~~~~-----------------------~~~~~~~~l~~~~---------------~~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 278 VVLNKIDLLDEE-----------------------ELAELLKELKKAL---------------GKPVFPISALTGEGLDE 319 (329)
T ss_pred EEEeCccCCChH-----------------------HHHHHHHHHHHHc---------------CCcEEEEEccCCcCHHH
Confidence 999999985431 1122222222111 13567899999999999
Q ss_pred HHHHHHHHH
Q 018283 339 TFKLVDETL 347 (358)
Q Consensus 339 vf~~i~~~i 347 (358)
+|+++.+.+
T Consensus 320 L~~~I~~~l 328 (329)
T TIGR02729 320 LLYALAELL 328 (329)
T ss_pred HHHHHHHHh
Confidence 999998754
No 167
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.49 E-value=2.9e-13 Score=122.60 Aligned_cols=138 Identities=13% Similarity=0.178 Sum_probs=81.0
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhh-----hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR-----KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~-----~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~ 241 (358)
+|..+....+. ..+.+.|++||.|||..+-. .....|+++.++|||+|... . .+.+.+.
T Consensus 33 ~T~~ve~~~v~-----~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs----------~-~~~~~l~ 96 (232)
T PF04670_consen 33 PTIDVEKSHVR-----FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS----------D-DYDEDLA 96 (232)
T ss_dssp ---SEEEEEEE-----CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-----------S-TCHHHHH
T ss_pred CcCCceEEEEe-----cCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc----------c-cHHHHHH
Confidence 55555554441 14567999999999976543 35778999999999999731 1 1333334
Q ss_pred HHHHHHcC--CCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCC
Q 018283 242 LFDWVLKQ--PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRV 319 (358)
Q Consensus 242 ~~~~i~~~--~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~ 319 (358)
.|...+.. ...+++.+.++.+|+|+..+. ...+....+.++..+......
T Consensus 97 ~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~-----------------------~r~~~~~~~~~~i~~~~~~~~----- 148 (232)
T PF04670_consen 97 YLSDCIEALRQYSPNIKVFVFIHKMDLLSED-----------------------EREEIFRDIQQRIRDELEDLG----- 148 (232)
T ss_dssp HHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH-----------------------HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeecccCCHH-----------------------HHHHHHHHHHHHHHHHhhhcc-----
Confidence 33333221 123478999999999996432 122333334444433332111
Q ss_pred CceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 320 ~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
-..+.+|.||--| +.+-++|..|+..++.
T Consensus 149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 149 IEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp -TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred ccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 1148899999999 6899999988887764
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.49 E-value=4e-13 Score=115.24 Aligned_cols=105 Identities=12% Similarity=0.228 Sum_probs=67.1
Q ss_pred EEecCCCchhhhhHhh----hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 191 LFDVGGQRNERRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 191 i~D~~Gq~~~r~~w~~----y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
+|||+|+...+..|.. .+++++++|+|+|.++-+. .+. .++..+ ..++|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s---------~~~---~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES---------RLP---AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc---------ccC---HHHHhc-----cCCCCeEEEEEcccc
Confidence 6999999544444433 3689999999999853211 111 122222 125799999999998
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
... +.+.+.+++.+. .-...++++||++++||+++|+.+.+.
T Consensus 104 ~~~------------------------~~~~~~~~~~~~--------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 104 PDA------------------------DVAATRKLLLET--------------GFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred Ccc------------------------cHHHHHHHHHHc--------------CCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 431 122333332211 011357889999999999999999887
Q ss_pred HHHh
Q 018283 347 LRRR 350 (358)
Q Consensus 347 i~~~ 350 (358)
+.+.
T Consensus 146 ~~~~ 149 (158)
T PRK15467 146 TKQE 149 (158)
T ss_pred chhh
Confidence 7543
No 169
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=9.2e-13 Score=126.14 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=75.8
Q ss_pred cceEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc-CCCCCCCc
Q 018283 185 SGEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTS 256 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~ 256 (358)
....+.+||++|.- .....|..+++.++++|+|+|+++. +.+++...|..++.. .+.+.++|
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~----------~s~e~~~~~~~EL~~~~~~L~~kp 273 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAV----------DPVEDYKTIRNELEKYSPELADKP 273 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCC----------CCHHHHHHHHHHHHHhhhhcccCC
Confidence 34578999999973 2445566677889999999998632 123333334444322 23345789
Q ss_pred EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283 257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336 (358)
Q Consensus 257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni 336 (358)
+++|+||+|+..+.. ...+....+ +.. ..+.++.+||++++||
T Consensus 274 ~IIV~NKiDL~~~~~---------------------~~~~~~~~~----~~~------------~~~~i~~iSAktg~GI 316 (335)
T PRK12299 274 RILVLNKIDLLDEEE---------------------EREKRAALE----LAA------------LGGPVFLISAVTGEGL 316 (335)
T ss_pred eEEEEECcccCCchh---------------------HHHHHHHHH----HHh------------cCCCEEEEEcCCCCCH
Confidence 999999999854311 000111111 110 1145678999999999
Q ss_pred HHHHHHHHHHHHH
Q 018283 337 KKTFKLVDETLRR 349 (358)
Q Consensus 337 ~~vf~~i~~~i~~ 349 (358)
+++|+++.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 170
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=4.1e-13 Score=115.96 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=71.6
Q ss_pred ceEEEEEecCCCch----hhhh---HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC------C
Q 018283 186 GEVYRLFDVGGQRN----ERRK---WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC------F 252 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~----~r~~---w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~------~ 252 (358)
+..+.+|||+|+.. .+.+ +..++++++++++|+|.++.+.. ...+.+.+...+...+..... .
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLL 118 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 67889999999732 2333 34467899999999998531100 001334443334444432221 2
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.+.|+++++||+|+..... ..+.. ..... ......++.+||++
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~-----------------------~~~~~---~~~~~-----------~~~~~~~~~~Sa~~ 161 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEE-----------------------LEEEL---VRELA-----------LEEGAEVVPISAKT 161 (176)
T ss_pred hhCCeEEEEEchhcCchhH-----------------------HHHHH---HHHHh-----------cCCCCCEEEEehhh
Confidence 4689999999999864321 01100 00000 01234578899999
Q ss_pred hhhHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDET 346 (358)
Q Consensus 333 ~~ni~~vf~~i~~~ 346 (358)
+.|++++++.+...
T Consensus 162 ~~gl~~l~~~l~~~ 175 (176)
T cd01881 162 EEGLDELIRAIYEL 175 (176)
T ss_pred hcCHHHHHHHHHhh
Confidence 99999999988654
No 171
>PRK15494 era GTPase Era; Provisional
Probab=99.49 E-value=3.9e-13 Score=129.25 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=65.9
Q ss_pred ccceEEEEEecCCCch-hhhh-------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 184 KSGEVYRLFDVGGQRN-ERRK-------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~-~r~~-------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
..+..+.+|||+|+.. +..+ ...+++++|++|||+|.++ ...... ..++..+... +.
T Consensus 97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~---------s~~~~~--~~il~~l~~~----~~ 161 (339)
T PRK15494 97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK---------SFDDIT--HNILDKLRSL----NI 161 (339)
T ss_pred eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC---------CCCHHH--HHHHHHHHhc----CC
Confidence 3456789999999842 2111 1234789999999999631 112221 1233333221 35
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|.++|+||+|+..+. ..++.+++... .....++.+||+++.|
T Consensus 162 p~IlViNKiDl~~~~------------------------~~~~~~~l~~~--------------~~~~~i~~iSAktg~g 203 (339)
T PRK15494 162 VPIFLLNKIDIESKY------------------------LNDIKAFLTEN--------------HPDSLLFPISALSGKN 203 (339)
T ss_pred CEEEEEEhhcCcccc------------------------HHHHHHHHHhc--------------CCCcEEEEEeccCccC
Confidence 778899999985321 12223322111 0113467899999999
Q ss_pred HHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETL 347 (358)
Q Consensus 336 i~~vf~~i~~~i 347 (358)
++++|+++.+.+
T Consensus 204 v~eL~~~L~~~l 215 (339)
T PRK15494 204 IDGLLEYITSKA 215 (339)
T ss_pred HHHHHHHHHHhC
Confidence 999999887654
No 172
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.48 E-value=2e-14 Score=122.28 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=88.6
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..-+++++||++||++|-.+..-||+++++...|+|+|. +.+.+-...+++.+.+-++.|....+|++++.||
T Consensus 72 ~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~-------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 72 KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR-------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc-------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 344788999999999999999999999999999999962 3444545555555555555566667899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|....-. .++-.-+. .|.. . .-....++||||.+.||.++-+.+
T Consensus 145 Cd~e~~a~------------------------~~~~~~~d-~f~k------e----ngf~gwtets~Kenkni~Ea~r~l 189 (229)
T KOG4423|consen 145 CDQEKSAK------------------------NEATRQFD-NFKK------E----NGFEGWTETSAKENKNIPEAQREL 189 (229)
T ss_pred hccChHhh------------------------hhhHHHHH-HHHh------c----cCccceeeeccccccChhHHHHHH
Confidence 99843211 11111111 1110 0 112346889999999999999999
Q ss_pred HHHHHHhh
Q 018283 344 DETLRRRH 351 (358)
Q Consensus 344 ~~~i~~~~ 351 (358)
++.|+-+.
T Consensus 190 Ve~~lvnd 197 (229)
T KOG4423|consen 190 VEKILVND 197 (229)
T ss_pred HHHHHhhc
Confidence 99987543
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.48 E-value=7.7e-13 Score=135.15 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=73.3
Q ss_pred EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283 188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 267 (358)
.+.+|||+||+.|...|..++..+|++|+|+|.++ .....+.+.+.... ..++|+++++||+|+.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPIIVAINKIDKP 200 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEEEEEECcccc
Confidence 78999999999999999999999999999999731 11222333333221 2368999999999985
Q ss_pred hhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 268 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 268 ~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+. +.++..+++... . +... .-...+.++.+||++++||.++|+++..
T Consensus 201 ~~------------------------~~e~v~~~L~~~-g-~~~~-----~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 201 EA------------------------NPDRVKQELSEY-G-LVPE-----DWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cC------------------------CHHHHHHHHHHh-h-hhHH-----hcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 32 112222222210 0 0000 0011245778999999999999999864
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=1.2e-12 Score=112.26 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=70.0
Q ss_pred cceEEEEEecCCCchhh-----------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 185 SGEVYRLFDVGGQRNER-----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r-----------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
.+..+.+||++|..... .....++.+++++|+|+|.++ ... .....++..+.. .
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~----~ 112 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE----E 112 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh----c
Confidence 44568899999975331 112345789999999999742 111 112233333322 2
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++++||+|+..... ...++..+.+...+.. .....++.+||+++
T Consensus 113 ~~~~iiv~nK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~ 160 (174)
T cd01895 113 GKALVIVVNKWDLVEKDS---------------------KTMKEFKKEIRRKLPF-----------LDYAPIVFISALTG 160 (174)
T ss_pred CCCEEEEEeccccCCccH---------------------HHHHHHHHHHHhhccc-----------ccCCceEEEeccCC
Confidence 579999999999864310 1123333443333211 11245788999999
Q ss_pred hhHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDE 345 (358)
Q Consensus 334 ~ni~~vf~~i~~ 345 (358)
+|+.++|+.+..
T Consensus 161 ~~i~~~~~~l~~ 172 (174)
T cd01895 161 QGVDKLFDAIDE 172 (174)
T ss_pred CCHHHHHHHHHH
Confidence 999999998865
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=9.9e-13 Score=116.06 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=66.6
Q ss_pred eEEEEEecCCC----------chhhhhHhhhhcCC---cEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283 187 EVYRLFDVGGQ----------RNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF 252 (358)
Q Consensus 187 ~~l~i~D~~Gq----------~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~ 252 (358)
..+.+|||+|. +.+......|++.+ +++++|+|.+. ..... .+...++ ..
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~---------~~~~~~~~i~~~l----~~--- 133 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH---------PLKELDLQMIEWL----KE--- 133 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC---------CCCHHHHHHHHHH----HH---
Confidence 67999999994 44555566677755 57888888641 11111 1112222 21
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.+.|+++++||+|+.... ..+.....+...+.. ....++.+||++
T Consensus 134 ~~~~~iiv~nK~Dl~~~~-----------------------~~~~~~~~i~~~l~~------------~~~~~~~~Sa~~ 178 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKG-----------------------ERKKQLKKVRKALKF------------GDDEVILFSSLK 178 (196)
T ss_pred cCCcEEEEEECcccCCHH-----------------------HHHHHHHHHHHHHHh------------cCCceEEEEcCC
Confidence 257899999999986421 112222222222211 124456899999
Q ss_pred hhhHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETL 347 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i 347 (358)
++|++++|+.+.+.+
T Consensus 179 ~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 179 KQGIDELRAAIAKWL 193 (196)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887655
No 176
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.46 E-value=1.5e-12 Score=129.60 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=47.2
Q ss_pred cccceEEEEEecCCCchhhh--------hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~--------~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|++.... ....+++++|++|+|+|.++. ....+ ..++.. ..+
T Consensus 259 ~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~----------~s~~~-~~~l~~------~~~ 321 (449)
T PRK05291 259 NLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP----------LTEED-DEILEE------LKD 321 (449)
T ss_pred EECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC----------CChhH-HHHHHh------cCC
Confidence 44567899999999975432 133478999999999998532 12221 223322 346
Q ss_pred CcEEEEeeCCCchh
Q 018283 255 TSFMLFLNKFDIFE 268 (358)
Q Consensus 255 ~~iilv~NK~Dl~~ 268 (358)
+|+++|+||+|+..
T Consensus 322 ~piiiV~NK~DL~~ 335 (449)
T PRK05291 322 KPVIVVLNKADLTG 335 (449)
T ss_pred CCcEEEEEhhhccc
Confidence 89999999999854
No 177
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.45 E-value=1.4e-12 Score=133.76 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=76.3
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+++|||+|+..|...|..+++.++++|+|+|.++- ... .....+..... .+.|+++|+||
T Consensus 67 g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g----------~~~-qt~~~~~~~~~----~~ipiIiViNK 131 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG----------IEA-QTLANVYLALE----NDLEIIPVINK 131 (595)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC----------CCH-hHHHHHHHHHH----cCCCEEEEEEC
Confidence 3458999999999999999999999999999999998521 111 11222222222 25799999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.... .++..+-+.+.+. + ....++.+||+++.||.++|+++
T Consensus 132 iDl~~~~------------------------~~~~~~el~~~lg-~-----------~~~~vi~vSAktG~GI~~Lle~I 175 (595)
T TIGR01393 132 IDLPSAD------------------------PERVKKEIEEVIG-L-----------DASEAILASAKTGIGIEEILEAI 175 (595)
T ss_pred cCCCccC------------------------HHHHHHHHHHHhC-C-----------CcceEEEeeccCCCCHHHHHHHH
Confidence 9985321 1111111222110 0 01236789999999999999999
Q ss_pred HHHHH
Q 018283 344 DETLR 348 (358)
Q Consensus 344 ~~~i~ 348 (358)
.+.+-
T Consensus 176 ~~~lp 180 (595)
T TIGR01393 176 VKRVP 180 (595)
T ss_pred HHhCC
Confidence 87653
No 178
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=1.5e-12 Score=130.69 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=71.6
Q ss_pred ccceEEEEEecCCCc----------hhhhh-HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 184 KSGEVYRLFDVGGQR----------NERRK-WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~----------~~r~~-w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
..+..+.+|||+|++ .+... ...++++++++|+|+|.++ ..+.. ...++..+..
T Consensus 256 ~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~-~~~~~~~~~~---- 320 (472)
T PRK03003 256 LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQ-DQRVLSMVIE---- 320 (472)
T ss_pred ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----
Confidence 345567899999963 23332 2346789999999999752 22222 2234444433
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.++|++||+||+|+..+.. .......+...+.. .....+++|||++
T Consensus 321 ~~~piIiV~NK~Dl~~~~~-----------------------~~~~~~~i~~~l~~-----------~~~~~~~~~SAk~ 366 (472)
T PRK03003 321 AGRALVLAFNKWDLVDEDR-----------------------RYYLEREIDRELAQ-----------VPWAPRVNISAKT 366 (472)
T ss_pred cCCCEEEEEECcccCChhH-----------------------HHHHHHHHHHhccc-----------CCCCCEEEEECCC
Confidence 3689999999999954210 00001111111110 1123467899999
Q ss_pred hhhHHHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETLRR 349 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~~ 349 (358)
+.||+++|..+.+.+-+
T Consensus 367 g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 367 GRAVDKLVPALETALES 383 (472)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887643
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.44 E-value=6.5e-13 Score=116.07 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.7
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
++..+|+++|.+++|||||++++.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 567899999999999999999874
No 180
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.44 E-value=1.4e-12 Score=110.17 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=68.0
Q ss_pred cccceEEEEEecCCCchhhh--------hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~--------~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|...... ....++..++++++|+|.+. ....... ..+.. ..+
T Consensus 45 ~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~-~~~~~------~~~ 107 (157)
T cd04164 45 DIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDL-EILEL------PAD 107 (157)
T ss_pred EeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHH-HHHHh------hcC
Confidence 33457899999999754421 12246779999999999852 1222111 11211 346
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++++||+|+..+.. . .. ......++.+||+++.
T Consensus 108 ~~vi~v~nK~D~~~~~~-----------------------~---------~~------------~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 108 KPIIVVLNKSDLLPDSE-----------------------L---------LS------------LLAGKPIIAISAKTGE 143 (157)
T ss_pred CCEEEEEEchhcCCccc-----------------------c---------cc------------ccCCCceEEEECCCCC
Confidence 89999999999864321 0 00 0122456789999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
|++++++++.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999988754
No 181
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=1.2e-12 Score=110.72 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=69.2
Q ss_pred ccceEEEEEecCCCchhhh--------hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 184 KSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~--------~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
..+..+.+|||+|+..++. .+..++++++++|+|+|.++. ..... ...+.. +.. .+.
T Consensus 42 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~--~~~~~~-~~~---~~~ 106 (157)
T cd01894 42 WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG---------LTPAD--EEIAKY-LRK---SKK 106 (157)
T ss_pred ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc---------CCccH--HHHHHH-HHh---cCC
Confidence 3457899999999988554 455678899999999997421 11111 112222 221 248
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++++||+|+..... . ...+..+ . .-.++.+||+++.|
T Consensus 107 piiiv~nK~D~~~~~~---------------------~---------~~~~~~~-----~------~~~~~~~Sa~~~~g 145 (157)
T cd01894 107 PVILVVNKVDNIKEED---------------------E---------AAEFYSL-----G------FGEPIPISAEHGRG 145 (157)
T ss_pred CEEEEEECcccCChHH---------------------H---------HHHHHhc-----C------CCCeEEEecccCCC
Confidence 9999999999854311 0 0111111 0 01357899999999
Q ss_pred HHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETL 347 (358)
Q Consensus 336 i~~vf~~i~~~i 347 (358)
++++|+++.+.+
T Consensus 146 v~~l~~~l~~~~ 157 (157)
T cd01894 146 IGDLLDAILELL 157 (157)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 182
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.43 E-value=2.3e-12 Score=128.38 Aligned_cols=126 Identities=12% Similarity=0.194 Sum_probs=75.7
Q ss_pred cccceEEEEEecCCCc----hh---hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC------
Q 018283 183 KKSGEVYRLFDVGGQR----NE---RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ------ 249 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~----~~---r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~------ 249 (358)
......|.+|||+|.. .. ...+..+++.++++|+|+|+++...- ......+..+...+......
T Consensus 202 ~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y~~~l~~~~~ 278 (500)
T PRK12296 202 QAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAYAPALDGDLG 278 (500)
T ss_pred EECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHhhhcccccch
Confidence 3345789999999953 11 12234456789999999998642100 01112233333333333211
Q ss_pred -CCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEe
Q 018283 250 -PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT 328 (358)
Q Consensus 250 -~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~t 328 (358)
..+.+.|++||+||+|+.+++- ..+.+...+.. +.+.++.+
T Consensus 279 ~~~l~~kP~IVVlNKiDL~da~e--------------------------l~e~l~~~l~~------------~g~~Vf~I 320 (500)
T PRK12296 279 LGDLAERPRLVVLNKIDVPDARE--------------------------LAEFVRPELEA------------RGWPVFEV 320 (500)
T ss_pred hhhhcCCCEEEEEECccchhhHH--------------------------HHHHHHHHHHH------------cCCeEEEE
Confidence 0245689999999999964321 11122222211 23567889
Q ss_pred eccChhhHHHHHHHHHHHHHH
Q 018283 329 TALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 329 SA~d~~ni~~vf~~i~~~i~~ 349 (358)
||++++|+++++.++.+.+..
T Consensus 321 SA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 321 SAASREGLRELSFALAELVEE 341 (500)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 183
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.3e-12 Score=114.04 Aligned_cols=137 Identities=19% Similarity=0.229 Sum_probs=87.1
Q ss_pred cceEEEEEecCCCchhhhhHhhhhc---CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CCCCCcEEE
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFML 259 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~---~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~iil 259 (358)
+.-..++.|.+|+.+.|.+...||. .+.+||||||...|+ ....+..+.+-.++.+. .-..+|+++
T Consensus 80 gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~~~~~~~~vLI 150 (238)
T KOG0090|consen 80 GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSRVKKNKPPVLI 150 (238)
T ss_pred cCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 3344899999999999999999998 799999999986443 44556666666655443 345689999
Q ss_pred EeeCCCchhhh----hcc---C---CCcc-cc-----cccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283 260 FLNKFDIFEKK----VLK---V---PLNV-CE-----WFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 323 (358)
Q Consensus 260 v~NK~Dl~~ek----i~~---~---~l~~-~~-----~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~ 323 (358)
.+||+|++-+| |+. . .+.. +. -..++.... ..-.++.+| +|..+ .+..+
T Consensus 151 aCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~---tlg~~g~dF---~fs~l---------~~~~V 215 (238)
T KOG0090|consen 151 ACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDF---TLGKEGEDF---KFSHL---------EDQKV 215 (238)
T ss_pred EecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccc---ccccccccc---chhhc---------cccee
Confidence 99999998653 111 0 0000 00 000111000 112223332 34443 23568
Q ss_pred EEEEeeccChhhHHHHHHHHHHH
Q 018283 324 KIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 324 ~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
.+-++|++++ +|++.-+|+.+.
T Consensus 216 ~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 216 TFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred EEeecccCcC-ChHHHHHHHHHh
Confidence 8889999998 899988888764
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.43 E-value=2e-12 Score=134.20 Aligned_cols=116 Identities=12% Similarity=0.053 Sum_probs=76.1
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
....+.+|||+|++.|...|..++..+|++|+|+|.++- . ...+.+.+..+. ..++|+++++||+
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG--------v---~~QT~E~I~~~k----~~~iPiIVViNKi 357 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG--------V---KPQTIEAINYIQ----AANVPIIVAINKI 357 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC--------C---ChhhHHHHHHHH----hcCceEEEEEECC
Confidence 468899999999999999999999999999999997421 1 112222233321 1368999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+.... .++....+... .+... . ....+.++.+||++++||.++|+.+.
T Consensus 358 Dl~~~~------------------------~e~v~~eL~~~--~ll~e--~---~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 358 DKANAN------------------------TERIKQQLAKY--NLIPE--K---WGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred CccccC------------------------HHHHHHHHHHh--ccchH--h---hCCCceEEEEECCCCCCHHHHHHhhh
Confidence 986421 11111111110 00000 0 01235678899999999999999887
Q ss_pred HH
Q 018283 345 ET 346 (358)
Q Consensus 345 ~~ 346 (358)
..
T Consensus 407 ~l 408 (742)
T CHL00189 407 LL 408 (742)
T ss_pred hh
Confidence 64
No 185
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.43 E-value=4.1e-12 Score=104.97 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=84.7
Q ss_pred cceEEEEEecCCCchh-hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 185 SGEVYRLFDVGGQRNE-RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~-r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
-.-.++++||+|-..+ ..+-.+||+-+|++++|+|.. +.++|...--+-+.|-.+..-..+||++++||
T Consensus 58 arE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~----------d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~ 127 (198)
T KOG3883|consen 58 AREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPM----------DPESFQRVELLKKEIDKHKDKKEVPIVVLANK 127 (198)
T ss_pred hhheEEEeecccccCchhhhhHhHhccCceEEEEecCC----------CHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence 3456899999998777 778899999999999999963 44444443333333434555567999999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.+.+- .+.+-|..|.. ...+..++++|+|...+-+-|..+
T Consensus 128 rdr~~p~~---------------------vd~d~A~~Wa~----------------rEkvkl~eVta~dR~sL~epf~~l 170 (198)
T KOG3883|consen 128 RDRAEPRE---------------------VDMDVAQIWAK----------------REKVKLWEVTAMDRPSLYEPFTYL 170 (198)
T ss_pred hhcccchh---------------------cCHHHHHHHHh----------------hhheeEEEEEeccchhhhhHHHHH
Confidence 99854321 34555666622 234778899999999999999998
Q ss_pred HHHHH
Q 018283 344 DETLR 348 (358)
Q Consensus 344 ~~~i~ 348 (358)
...+-
T Consensus 171 ~~rl~ 175 (198)
T KOG3883|consen 171 ASRLH 175 (198)
T ss_pred HHhcc
Confidence 87653
No 186
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.42 E-value=1.9e-12 Score=117.05 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=78.0
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
-|.......| ..++..+.+|||+|++.+...+......++++|+|+|.++-.. + ............+...
T Consensus 63 ~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~-~~~~~~~~~~~~~~~~ 132 (219)
T cd01883 63 VTIDVGLAKF------ETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---E-AGFEKGGQTREHALLA 132 (219)
T ss_pred cCeecceEEE------eeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---c-cccccccchHHHHHHH
Confidence 3444445566 6678899999999999998888888899999999999863100 0 0001111122222221
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
. .....|+++++||+|+..... .. ...++..+.+...+.... . ..+.+.++
T Consensus 133 -~--~~~~~~iiivvNK~Dl~~~~~------------------~~-~~~~~i~~~l~~~l~~~~----~---~~~~~~ii 183 (219)
T cd01883 133 -R--TLGVKQLIVAVNKMDDVTVNW------------------SE-ERYDEIKKELSPFLKKVG----Y---NPKDVPFI 183 (219)
T ss_pred -H--HcCCCeEEEEEEccccccccc------------------cH-HHHHHHHHHHHHHHHHcC----C---CcCCceEE
Confidence 1 122368999999999963200 00 112333333333333220 0 12357788
Q ss_pred EeeccChhhHH
Q 018283 327 RTTALDPKLVK 337 (358)
Q Consensus 327 ~tSA~d~~ni~ 337 (358)
.+||++|+||.
T Consensus 184 ~iSA~tg~gi~ 194 (219)
T cd01883 184 PISGLTGDNLI 194 (219)
T ss_pred EeecCcCCCCC
Confidence 99999999986
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.42 E-value=5.1e-12 Score=129.76 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=77.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+.+.+.+++|||+|+..|...|..+++.++++|+|+|.++- .. . .....+..... .+.|+++|+|
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g---------v~-~-qt~~~~~~~~~----~~lpiIvViN 134 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG---------VE-A-QTLANVYLALE----NDLEIIPVLN 134 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC---------CC-H-HHHHHHHHHHH----CCCCEEEEEE
Confidence 34578999999999999999999999999999999998521 11 1 12222222222 2679999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+. .++..+-+.+.+. + ....++.+||+++.||.++|++
T Consensus 135 KiDl~~a~------------------------~~~v~~ei~~~lg-~-----------~~~~vi~iSAktG~GI~~Ll~~ 178 (600)
T PRK05433 135 KIDLPAAD------------------------PERVKQEIEDVIG-I-----------DASDAVLVSAKTGIGIEEVLEA 178 (600)
T ss_pred CCCCCccc------------------------HHHHHHHHHHHhC-C-----------CcceEEEEecCCCCCHHHHHHH
Confidence 99985321 1111122222210 0 1123678999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+-
T Consensus 179 I~~~lp 184 (600)
T PRK05433 179 IVERIP 184 (600)
T ss_pred HHHhCc
Confidence 987764
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.42 E-value=3.4e-12 Score=130.82 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=76.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~ 261 (358)
...+..+.+||++|++.|.+.+..++.++|++|+|+|.++ .......+.+.++.. .++| +++++
T Consensus 46 ~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~--------G~~~qT~ehl~il~~-------lgi~~iIVVl 110 (581)
T TIGR00475 46 PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE--------GVMTQTGEHLAVLDL-------LGIPHTIVVI 110 (581)
T ss_pred EeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC--------CCcHHHHHHHHHHHH-------cCCCeEEEEE
Confidence 3344889999999999999999999999999999999742 111112222222211 2466 99999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+.++.. ++...+.+.+.+... . ....+.++.+||++++||.++++
T Consensus 111 NK~Dlv~~~~-----------------------~~~~~~ei~~~l~~~-----~---~~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 111 TKADRVNEEE-----------------------IKRTEMFMKQILNSY-----I---FLKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred ECCCCCCHHH-----------------------HHHHHHHHHHHHHHh-----C---CCCCCcEEEEeCCCCCCchhHHH
Confidence 9999864311 111111111111111 0 01135678899999999999999
Q ss_pred HHHHHHH
Q 018283 342 LVDETLR 348 (358)
Q Consensus 342 ~i~~~i~ 348 (358)
.+.+.+-
T Consensus 160 ~L~~l~~ 166 (581)
T TIGR00475 160 ELKNLLE 166 (581)
T ss_pred HHHHHHH
Confidence 8876553
No 189
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.40 E-value=6.4e-12 Score=128.71 Aligned_cols=132 Identities=16% Similarity=0.113 Sum_probs=89.2
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.......+ ..++.++.+|||+|+..|...+..+++.+|++|+|+|.++ .....+..++..
T Consensus 49 GiTI~~~~~~v------~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~ 111 (594)
T TIGR01394 49 GITILAKNTAI------RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKK 111 (594)
T ss_pred CccEEeeeEEE------EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHH
Confidence 34444444555 6678999999999999999999999999999999999741 123344555655
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.. .++|+++|+||+|+..++ ..+..+-+...|..+... .....+.+
T Consensus 112 a~~----~~ip~IVviNKiD~~~a~------------------------~~~v~~ei~~l~~~~g~~-----~e~l~~pv 158 (594)
T TIGR01394 112 ALE----LGLKPIVVINKIDRPSAR------------------------PDEVVDEVFDLFAELGAD-----DEQLDFPI 158 (594)
T ss_pred HHH----CCCCEEEEEECCCCCCcC------------------------HHHHHHHHHHHHHhhccc-----cccccCcE
Confidence 544 257999999999985432 122233333334332110 01123557
Q ss_pred EEeeccChh----------hHHHHHHHHHHHH
Q 018283 326 YRTTALDPK----------LVKKTFKLVDETL 347 (358)
Q Consensus 326 ~~tSA~d~~----------ni~~vf~~i~~~i 347 (358)
+++||+++. +|..+|+.+.+.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 789999985 7999999888765
No 190
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.40 E-value=3.1e-12 Score=133.88 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=74.8
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+..+.||||+|++.|...|..+++.+|++|+|+|.++ .....+.+.+..+. ..++|+++++||+
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIVviNKi 399 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIVAINKI 399 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEEEEECc
Confidence 35689999999999999999999999999999999731 11222333333221 2368999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+.... .+.....+.. + .+.... ....+.++.+||++++||.++|+.+.
T Consensus 400 Dl~~a~------------------------~e~V~~eL~~-~-~~~~e~-----~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 400 DKPGAN------------------------PDRVKQELSE-Y-GLVPEE-----WGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred cccccC------------------------HHHHHHHHHH-h-cccHHH-----hCCCceEEEEeCCCCCCchHHHHhhh
Confidence 985421 0111111110 0 000000 01235678899999999999999986
Q ss_pred H
Q 018283 345 E 345 (358)
Q Consensus 345 ~ 345 (358)
.
T Consensus 449 ~ 449 (787)
T PRK05306 449 L 449 (787)
T ss_pred h
Confidence 4
No 191
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=8.8e-12 Score=106.54 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=77.9
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+..+.++||+||++|+.+|..+++++.++|+++|.| ....+ ++...+.-+.... .+|++++.||+
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss----------~~~~~-~a~~ii~f~~~~~---~ip~vVa~NK~ 131 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS----------RPITF-HAEEIIDFLTSRN---PIPVVVAINKQ 131 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecC----------CCcch-HHHHHHHHHhhcc---CCCEEEEeecc
Confidence 4478899999999999999999999999999999964 22222 3333333221111 18999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
||+.+. .++.+.++.+. . ...+..+.++|+++++.++..+.+.
T Consensus 132 DL~~a~--------------------ppe~i~e~l~~---~--------------~~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 132 DLFDAL--------------------PPEKIREALKL---E--------------LLSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred ccCCCC--------------------CHHHHHHHHHh---c--------------cCCCceeeeecccchhHHHHHHHHH
Confidence 997652 11334444432 0 1246678899999999999988766
Q ss_pred HH
Q 018283 345 ET 346 (358)
Q Consensus 345 ~~ 346 (358)
..
T Consensus 175 ~~ 176 (187)
T COG2229 175 LK 176 (187)
T ss_pred hh
Confidence 54
No 192
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.39 E-value=1.6e-12 Score=107.53 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=85.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
.+-.+.|.+||+|||++++...+.-..++-+|+|++|+ +.+..+....+|+.+...... .-+| +++|+
T Consensus 65 ~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDL----------t~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGT 132 (205)
T KOG1673|consen 65 RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDL----------TRRSTLNSIKEWYRQARGLNK-TAIP-ILVGT 132 (205)
T ss_pred cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEec----------CchHHHHHHHHHHHHHhccCC-ccce-EEecc
Confidence 45667899999999999999999889999999999999 456666677778877644221 1234 67899
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|++-. + .|+++ - .-..+|..|-+-. ....+++||....||+.+|..
T Consensus 133 KyD~fi~-l----------p~e~Q----~-~I~~qar~YAk~m----------------nAsL~F~Sts~sINv~KIFK~ 180 (205)
T KOG1673|consen 133 KYDLFID-L----------PPELQ----E-TISRQARKYAKVM----------------NASLFFCSTSHSINVQKIFKI 180 (205)
T ss_pred chHhhhc-C----------CHHHH----H-HHHHHHHHHHHHh----------------CCcEEEeeccccccHHHHHHH
Confidence 9998632 0 11110 0 1233444442211 134577899999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+...+.+
T Consensus 181 vlAklFn 187 (205)
T KOG1673|consen 181 VLAKLFN 187 (205)
T ss_pred HHHHHhC
Confidence 8877754
No 193
>PRK10218 GTP-binding protein; Provisional
Probab=99.37 E-value=1.3e-11 Score=126.48 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=81.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..+++.+.+|||+|+..|...|..+++.++++|+|+|.++ .........+..+.. .+.|++++.|
T Consensus 64 ~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~gip~IVviN 128 (607)
T PRK10218 64 KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----YGLKPIVVIN 128 (607)
T ss_pred ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----cCCCEEEEEE
Confidence 6678999999999999999999999999999999999742 112223333444333 2678899999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh--------
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-------- 334 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-------- 334 (358)
|+|+..++ .++..+-+...|..+.. ......+.++.+||+++.
T Consensus 129 KiD~~~a~------------------------~~~vl~ei~~l~~~l~~-----~~~~~~~PVi~~SA~~G~~~~~~~~~ 179 (607)
T PRK10218 129 KVDRPGAR------------------------PDWVVDQVFDLFVNLDA-----TDEQLDFPIVYASALNGIAGLDHEDM 179 (607)
T ss_pred CcCCCCCc------------------------hhHHHHHHHHHHhccCc-----cccccCCCEEEeEhhcCcccCCcccc
Confidence 99986432 12233334444433210 001234667889999997
Q ss_pred --hHHHHHHHHHHHH
Q 018283 335 --LVKKTFKLVDETL 347 (358)
Q Consensus 335 --ni~~vf~~i~~~i 347 (358)
++..+|+.|.+.+
T Consensus 180 ~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 180 AEDMTPLYQAIVDHV 194 (607)
T ss_pred ccchHHHHHHHHHhC
Confidence 5888888777665
No 194
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.37 E-value=1.5e-12 Score=113.15 Aligned_cols=78 Identities=23% Similarity=0.369 Sum_probs=55.2
Q ss_pred ccceEEEEEecCCCchhhhhHhhh---hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC--CCCCcEE
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFM 258 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y---~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~ii 258 (358)
...-.+.+.|++|+++.|.....+ ..++.+||||+|.+ .....+.+..+.+..++..+. ...+|++
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs---------~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piL 116 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSS---------TDQKELRDVAEYLYDILSDTEVQKNKPPIL 116 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETT---------THHHHHHHHHHHHHHHHHHHHCCTT--EEE
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCc---------cchhhHHHHHHHHHHHHHhhhhccCCCCEE
Confidence 355678999999999999866554 78999999999975 234456677777777665433 3468999
Q ss_pred EEeeCCCchhhh
Q 018283 259 LFLNKFDIFEKK 270 (358)
Q Consensus 259 lv~NK~Dl~~ek 270 (358)
|++||+|++.++
T Consensus 117 IacNK~Dl~~A~ 128 (181)
T PF09439_consen 117 IACNKQDLFTAK 128 (181)
T ss_dssp EEEE-TTSTT--
T ss_pred EEEeCccccccC
Confidence 999999998753
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=5.6e-12 Score=125.38 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred ccceEEEEEecCCCch--------hhhhHhhhhcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCCCC
Q 018283 184 KSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEK 254 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~--------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~ 254 (358)
..+..+.+|||+|+.. .+..+..+++++|++|||+|.++ ..... .+...++.. .+
T Consensus 46 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~---------~~~~~~~~~~~~l~~-------~~ 109 (435)
T PRK00093 46 WLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA---------GLTPADEEIAKILRK-------SN 109 (435)
T ss_pred ECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHHHHHHHHHH-------cC
Confidence 3457899999999987 45567778999999999999742 11111 122233322 16
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccCh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDP 333 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~ 333 (358)
.|+++++||+|+.+.. ... .++ ..+ .+ .++.+||+++
T Consensus 110 ~piilv~NK~D~~~~~----------------------~~~---~~~-----~~l------------g~~~~~~iSa~~g 147 (435)
T PRK00093 110 KPVILVVNKVDGPDEE----------------------ADA---YEF-----YSL------------GLGEPYPISAEHG 147 (435)
T ss_pred CcEEEEEECccCccch----------------------hhH---HHH-----Hhc------------CCCCCEEEEeeCC
Confidence 8999999999964210 111 111 111 01 2467999999
Q ss_pred hhHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDE 345 (358)
Q Consensus 334 ~ni~~vf~~i~~ 345 (358)
.|+.++|+.+..
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999999877
No 196
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.36 E-value=1.3e-11 Score=121.35 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=71.9
Q ss_pred ceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283 186 GEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii 258 (358)
...|.+||++|... ....|..+.+.++++|+|+|+++.+. ....+.+..+.+++... .+.+.+.|++
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~----~dp~e~~~~i~~EL~~y--~~~L~~kP~I 278 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG----RDPIEDYEKINKELKLY--NPRLLERPQI 278 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc----CChHHHHHHHHHHHhhh--chhccCCcEE
Confidence 46799999999732 22334445667999999999864210 01112233333333332 2334578999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
||+||+||.... +...+ +...+ . ..++.+||++++|+++
T Consensus 279 VV~NK~DL~~~~-------------------------e~l~~-----l~~~l---------~--~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 279 VVANKMDLPEAE-------------------------ENLEE-----FKEKL---------G--PKVFPISALTGQGLDE 317 (424)
T ss_pred EEEeCCCCcCCH-------------------------HHHHH-----HHHHh---------C--CcEEEEeCCCCCCHHH
Confidence 999999983210 11111 11110 1 3467899999999999
Q ss_pred HHHHHHHHHHH
Q 018283 339 TFKLVDETLRR 349 (358)
Q Consensus 339 vf~~i~~~i~~ 349 (358)
+++++.+.+..
T Consensus 318 L~~~L~~~l~~ 328 (424)
T PRK12297 318 LLYAVAELLEE 328 (424)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
No 197
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.36 E-value=2.1e-11 Score=103.40 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=69.7
Q ss_pred ccceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 184 KSGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
.....+.+||++|..... ..+..++..++++++|+|.++. ..... ......+... +.
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--------~~~~~---~~~~~~~~~~----~~ 112 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--------IGEGD---EFILELLKKS----KT 112 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--------cCchH---HHHHHHHHHh----CC
Confidence 345789999999976433 2445668899999999998632 01111 1112222221 57
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++++||+|+.... ....+....+... .....++.+||+++.+
T Consensus 113 ~~iiv~nK~Dl~~~~----------------------~~~~~~~~~~~~~--------------~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 113 PVILVLNKIDLVKDK----------------------EDLLPLLEKLKEL--------------GPFAEIFPISALKGEN 156 (168)
T ss_pred CEEEEEEchhccccH----------------------HHHHHHHHHHHhc--------------cCCCceEEEEeccCCC
Confidence 999999999985210 1122222222211 1124567899999999
Q ss_pred HHHHHHHHHHH
Q 018283 336 VKKTFKLVDET 346 (358)
Q Consensus 336 i~~vf~~i~~~ 346 (358)
++++|+.+.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 198
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.36 E-value=1.9e-11 Score=113.98 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=44.0
Q ss_pred cceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283 185 SGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 256 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 256 (358)
.+..+.+|||+|....+ +.+..+++++|+++||+|.++. .... ..++..+ .. .+.|
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~----------~~~~--~~i~~~l-~~---~~~p 109 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW----------NGDG--EFVLTKL-QN---LKRP 109 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CchH--HHHHHHH-Hh---cCCC
Confidence 34578999999985421 2245678999999999998531 1111 1122222 21 2579
Q ss_pred EEEEeeCCCch
Q 018283 257 FMLFLNKFDIF 267 (358)
Q Consensus 257 iilv~NK~Dl~ 267 (358)
+++|+||+|+.
T Consensus 110 ~ilV~NK~Dl~ 120 (270)
T TIGR00436 110 VVLTRNKLDNK 120 (270)
T ss_pred EEEEEECeeCC
Confidence 99999999985
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.35 E-value=6e-12 Score=124.88 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=54.0
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
.|..+....| ...+..+.+||++||+.|.+....++.+++++|+|+|.++-+ ......+...+ .+
T Consensus 71 ~Tid~~~~~~------~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~--------~~~~~~t~~~~-~~ 135 (426)
T TIGR00483 71 VTIDVAHWKF------ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE--------FEVQPQTREHA-FL 135 (426)
T ss_pred ceEEEEEEEE------ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC--------cccCCchHHHH-HH
Confidence 3444444556 667789999999999988777677788999999999985310 00001111111 11
Q ss_pred HcCCCCCCCcEEEEeeCCCch
Q 018283 247 LKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~ 267 (358)
... ....|+++++||+|+.
T Consensus 136 ~~~--~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 136 ART--LGINQLIVAINKMDSV 154 (426)
T ss_pred HHH--cCCCeEEEEEEChhcc
Confidence 111 1235899999999985
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.35 E-value=9e-12 Score=122.77 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=74.8
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
...+.+||++||+.|.+.|......+|++|+|+|.++- .......+.+..+.. ....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~~qt~e~l~~l~~------~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP-------CPQPQTKEHLMALEI------IGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC-------ccccchHHHHHHHHH------cCCCeEEEEEEccc
Confidence 46899999999999999999999999999999997520 001222222332211 12347899999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+....-.. ...++..+++...+ ...+.++.+||++++|+.++++.+..
T Consensus 146 l~~~~~~~-------------------~~~~~i~~~l~~~~-------------~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 146 LVSKEKAL-------------------ENYEEIKEFVKGTV-------------AENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred cCCHHHHH-------------------HHHHHHHhhhhhcc-------------cCCCeEEEEECCCCCChHHHHHHHHH
Confidence 86421000 01122222211110 12356788999999999999999887
Q ss_pred HH
Q 018283 346 TL 347 (358)
Q Consensus 346 ~i 347 (358)
.+
T Consensus 194 ~l 195 (406)
T TIGR03680 194 FI 195 (406)
T ss_pred hC
Confidence 54
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.35 E-value=1.9e-11 Score=111.54 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=30.3
Q ss_pred ccceEEEEEecCCCchhh-------hhHhhhhcCCcEEEEEEEccc
Q 018283 184 KSGEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r-------~~w~~y~~~~~~iIfv~dls~ 222 (358)
..+..+++||++|+.... +.+..++++++++++|+|.++
T Consensus 44 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 44 YKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred ECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 456789999999985332 234568999999999999864
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.34 E-value=2e-11 Score=124.61 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=49.1
Q ss_pred EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283 188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 267 (358)
.+.+|||+||+.|+.+|..+++.+|++|+|+|.++ .......+.+.++. . .++|+++++||+|+.
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~--------g~~~qt~e~i~~l~---~----~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINE--------GFKPQTQEALNILR---M----YKTPFVVAANKIDRI 134 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCc--------CCCHhHHHHHHHHH---H----cCCCEEEEEECCCcc
Confidence 48999999999999999999999999999999852 11111122222222 1 267999999999996
Q ss_pred h
Q 018283 268 E 268 (358)
Q Consensus 268 ~ 268 (358)
.
T Consensus 135 ~ 135 (590)
T TIGR00491 135 P 135 (590)
T ss_pred c
Confidence 4
No 203
>PRK11058 GTPase HflX; Provisional
Probab=99.34 E-value=4e-11 Score=118.41 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=67.4
Q ss_pred EEEEEecCCCchh--hhhH------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283 188 VYRLFDVGGQRNE--RRKW------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 188 ~l~i~D~~Gq~~~--r~~w------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil 259 (358)
.+.+|||+|..+. ...| ..+++++|++|+|+|.|+ ......+..+..++..+. ..++|+++
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~-------~~~~e~l~~v~~iL~el~----~~~~pvIi 314 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD-------VRVQENIEAVNTVLEEID----AHEIPTLL 314 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC-------ccHHHHHHHHHHHHHHhc----cCCCCEEE
Confidence 6789999998432 2233 345789999999999852 111122222334444432 23689999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
|+||+|+..... ... .. . .. ... .++.+||++++|++++
T Consensus 315 V~NKiDL~~~~~---------------------~~~----~~----~-~~----------~~~-~~v~ISAktG~GIdeL 353 (426)
T PRK11058 315 VMNKIDMLDDFE---------------------PRI----DR----D-EE----------NKP-IRVWLSAQTGAGIPLL 353 (426)
T ss_pred EEEcccCCCchh---------------------HHH----HH----H-hc----------CCC-ceEEEeCCCCCCHHHH
Confidence 999999853210 000 00 0 00 001 1356999999999999
Q ss_pred HHHHHHHHHH
Q 018283 340 FKLVDETLRR 349 (358)
Q Consensus 340 f~~i~~~i~~ 349 (358)
|+++.+.+..
T Consensus 354 ~e~I~~~l~~ 363 (426)
T PRK11058 354 FQALTERLSG 363 (426)
T ss_pred HHHHHHHhhh
Confidence 9999988753
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.33 E-value=2.1e-11 Score=109.36 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.+|||+|++.+...+..+++.++++|+|+|.++ .. .......+.. +.. ....++++|+|
T Consensus 73 ~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~---------~~--~~~~~~~~~~-~~~--~~~~~iIvviN 138 (208)
T cd04166 73 STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK---------GV--LEQTRRHSYI-LSL--LGIRHVVVAVN 138 (208)
T ss_pred ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC---------Cc--cHhHHHHHHH-HHH--cCCCcEEEEEE
Confidence 4567789999999999888778888999999999999752 11 1111111111 111 11246888999
Q ss_pred CCCch
Q 018283 263 KFDIF 267 (358)
Q Consensus 263 K~Dl~ 267 (358)
|+|+.
T Consensus 139 K~D~~ 143 (208)
T cd04166 139 KMDLV 143 (208)
T ss_pred chhcc
Confidence 99985
No 205
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.33 E-value=4.4e-11 Score=101.82 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=70.5
Q ss_pred cccceEEEEEecCCCch------hhhhHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRN------ERRKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~------~r~~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+.|++|-.+ ..+.+..|. ...|++|.|+|.+ .++..+.+..++... +
T Consensus 43 ~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~-------------~l~r~l~l~~ql~e~----g 105 (156)
T PF02421_consen 43 KLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDAT-------------NLERNLYLTLQLLEL----G 105 (156)
T ss_dssp EETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGG-------------GHHHHHHHHHHHHHT----T
T ss_pred EecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCC-------------CHHHHHHHHHHHHHc----C
Confidence 55668899999999543 345566675 5899999999962 366667777777653 6
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++++||+|+.+++-.. .+.+ .+.+.+ .+....+||++++
T Consensus 106 ~P~vvvlN~~D~a~~~g~~-------------------id~~----~Ls~~L---------------g~pvi~~sa~~~~ 147 (156)
T PF02421_consen 106 IPVVVVLNKMDEAERKGIE-------------------IDAE----KLSERL---------------GVPVIPVSARTGE 147 (156)
T ss_dssp SSEEEEEETHHHHHHTTEE-------------------E-HH----HHHHHH---------------TS-EEEEBTTTTB
T ss_pred CCEEEEEeCHHHHHHcCCE-------------------ECHH----HHHHHh---------------CCCEEEEEeCCCc
Confidence 8999999999997653211 1222 122221 2457889999999
Q ss_pred hHHHHHHHH
Q 018283 335 LVKKTFKLV 343 (358)
Q Consensus 335 ni~~vf~~i 343 (358)
+++++++.|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999875
No 206
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=2.1e-11 Score=121.26 Aligned_cols=117 Identities=19% Similarity=0.310 Sum_probs=73.6
Q ss_pred cccceEEEEEecCCCchhhhh-----------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRK-----------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~-----------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.+|||+|..+.... ...+++.+|++|+|+|.++ ... .....++..+..
T Consensus 217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~--- 282 (435)
T PRK00093 217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE--- 282 (435)
T ss_pred EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH---
Confidence 345567899999997543322 2346789999999999752 111 112333433332
Q ss_pred CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 331 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~ 331 (358)
.+.|+++++||+|+..+.. ..+..+.+...+.. -..+.++++||+
T Consensus 283 -~~~~~ivv~NK~Dl~~~~~-----------------------~~~~~~~~~~~l~~-----------~~~~~i~~~SA~ 327 (435)
T PRK00093 283 -AGRALVIVVNKWDLVDEKT-----------------------MEEFKKELRRRLPF-----------LDYAPIVFISAL 327 (435)
T ss_pred -cCCcEEEEEECccCCCHHH-----------------------HHHHHHHHHHhccc-----------ccCCCEEEEeCC
Confidence 2579999999999863211 12222333333221 123567889999
Q ss_pred ChhhHHHHHHHHHHHHH
Q 018283 332 DPKLVKKTFKLVDETLR 348 (358)
Q Consensus 332 d~~ni~~vf~~i~~~i~ 348 (358)
++.||.++|+.+.+...
T Consensus 328 ~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877553
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.32 E-value=1.7e-11 Score=121.71 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=74.9
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|..+....| ..++..+.+|||+|++.+.+........+|++|+|+|.++-. .-.....+.+.+.
T Consensus 69 G~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~------~~~~~~~~~~~~~-- 134 (425)
T PRK12317 69 GVTIDLAHKKF------ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG------GVMPQTREHVFLA-- 134 (425)
T ss_pred CccceeeeEEE------ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC------CCCcchHHHHHHH--
Confidence 44555556666 667889999999999887655555567899999999985200 0011111222221
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
.. ....|+++++||+|+..... ..+.+..+.+...+.... - ....+.+
T Consensus 135 --~~--~~~~~iivviNK~Dl~~~~~---------------------~~~~~~~~~i~~~l~~~g----~---~~~~~~i 182 (425)
T PRK12317 135 --RT--LGINQLIVAINKMDAVNYDE---------------------KRYEEVKEEVSKLLKMVG----Y---KPDDIPF 182 (425)
T ss_pred --HH--cCCCeEEEEEEccccccccH---------------------HHHHHHHHHHHHHHHhhC----C---CcCcceE
Confidence 11 12247999999999853100 111222222322222210 0 1123668
Q ss_pred EEeeccChhhHHHHH
Q 018283 326 YRTTALDPKLVKKTF 340 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf 340 (358)
+.+||++++|+.+.+
T Consensus 183 i~iSA~~g~gi~~~~ 197 (425)
T PRK12317 183 IPVSAFEGDNVVKKS 197 (425)
T ss_pred EEeecccCCCccccc
Confidence 889999999998754
No 208
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=2.8e-11 Score=127.17 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=70.9
Q ss_pred ccceEEEEEecCCCch-hhhhH----------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 184 KSGEVYRLFDVGGQRN-ERRKW----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~-~r~~w----------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
..+..+.+|||+|+++ .+..| ..+++.++++|+|+|.++ ..+.. ...++..+..
T Consensus 495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~~-~~~i~~~~~~---- 559 (712)
T PRK09518 495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISEQ-DLKVMSMAVD---- 559 (712)
T ss_pred ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCHH-HHHHHHHHHH----
Confidence 3445678999999742 22222 334688999999999852 11221 2334444433
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.++|++||+||+|+.++.. .+...+.+...+.. -.....+.+||++
T Consensus 560 ~~~piIiV~NK~DL~~~~~-----------------------~~~~~~~~~~~l~~-----------~~~~~ii~iSAkt 605 (712)
T PRK09518 560 AGRALVLVFNKWDLMDEFR-----------------------RQRLERLWKTEFDR-----------VTWARRVNLSAKT 605 (712)
T ss_pred cCCCEEEEEEchhcCChhH-----------------------HHHHHHHHHHhccC-----------CCCCCEEEEECCC
Confidence 3689999999999954210 11111111111111 0113457799999
Q ss_pred hhhHHHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETLRR 349 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~~ 349 (358)
+.|+.++|+.+.+...+
T Consensus 606 g~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 606 GWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887654
No 209
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.30 E-value=2.4e-11 Score=101.74 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=70.8
Q ss_pred ceEEEEEecCCCchhh-------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283 186 GEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r-------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii 258 (358)
...+.+||++|+.... ..+..++++++++++|+|.+... ...... ++.... ..+.|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~---------~~~~~~--~~~~~~----~~~~~~i 108 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA---------DEEEEK--LLELLR----ERGKPVL 108 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC---------CHHHHH--HHHHHH----hcCCeEE
Confidence 6789999999987654 34556889999999999985321 111111 222222 2368999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
+++||.|+..+. ........ ...... ......++.+||+++.|+.+
T Consensus 109 vv~nK~D~~~~~-----------------------~~~~~~~~--~~~~~~---------~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 109 LVLNKIDLLPEE-----------------------EEEELLEL--RLLILL---------LLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEccccCChh-----------------------hHHHHHHH--HHhhcc---------cccCCceEEEeeeccCCHHH
Confidence 999999986431 11111110 000000 12345678899999999999
Q ss_pred HHHHHHHH
Q 018283 339 TFKLVDET 346 (358)
Q Consensus 339 vf~~i~~~ 346 (358)
+++.+.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99988764
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.30 E-value=5.4e-11 Score=108.80 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=92.8
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
.|.......+ ..++.++.+|||+|+..|...|..+++.++++|+|+|.++ ... .....+++.+
T Consensus 50 ~ti~~~~~~~------~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~---------g~~--~~~~~~~~~~ 112 (237)
T cd04168 50 ITIFSAVASF------QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE---------GVQ--AQTRILWRLL 112 (237)
T ss_pred CceeeeeEEE------EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC---------CCC--HHHHHHHHHH
Confidence 3444444555 5678899999999999999999999999999999999752 111 1233344433
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhh-----------hccCCCcccccccccccCCCC----cccHHHHHHHHHHHHHHHhh
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKK-----------VLKVPLNVCEWFKDYQPVSTG----KQEIENAYEFVKKKFEELYF 311 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~ek-----------i~~~~l~~~~~f~~y~~~~~g----~~~~~~~~~~i~~~f~~~~~ 311 (358)
.. .+.|+++|+||+|+..+. +...++-.. .|-+...... +...-+++.-.-+...+.+.
T Consensus 113 ~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl 186 (237)
T cd04168 113 RK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ--KVGLAPNICETNEIDDEFWETLAEGDDELLEKYL 186 (237)
T ss_pred HH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE--CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHh
Confidence 22 267999999999987421 111110000 1111000000 12233333333445555554
Q ss_pred hcCCCC------------CCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 312 QSTAPD------------RVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 312 ~~~~~~------------~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
...... ...+-+..+..||..+.+++.+++.+.+.
T Consensus 187 ~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 187 EGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 322211 02344567778999999999999988764
No 211
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=2.6e-11 Score=127.48 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=71.8
Q ss_pred cccceEEEEEecCCCch--------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~--------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|++. +...+..+++.+|++|||+|.++ ....... .+...+ .. .+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~---------~~~~~d~--~i~~~L-r~---~~ 383 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV---------GLTSTDE--RIVRML-RR---AG 383 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHH--HHHHHH-Hh---cC
Confidence 34567899999999863 45667778999999999999741 1111111 222222 21 36
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|+++|+||+|+.... ....+ |..+ . -. ..+.+||+++.
T Consensus 384 ~pvIlV~NK~D~~~~~-------------------------~~~~~-----~~~l-----g---~~---~~~~iSA~~g~ 422 (712)
T PRK09518 384 KPVVLAVNKIDDQASE-------------------------YDAAE-----FWKL-----G---LG---EPYPISAMHGR 422 (712)
T ss_pred CCEEEEEECcccccch-------------------------hhHHH-----HHHc-----C---CC---CeEEEECCCCC
Confidence 8999999999974310 00111 1111 0 01 13579999999
Q ss_pred hHHHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETLRR 349 (358)
Q Consensus 335 ni~~vf~~i~~~i~~ 349 (358)
||.++|+++.+.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988754
No 212
>PRK00089 era GTPase Era; Reviewed
Probab=99.29 E-value=3.7e-11 Score=113.26 Aligned_cols=112 Identities=23% Similarity=0.287 Sum_probs=66.9
Q ss_pred cceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283 185 SGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 256 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 256 (358)
.+..+.+|||+|....+ ..+..++.++|+++||+|.++ .+.+....+...+.. .+.|
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~------------~~~~~~~~i~~~l~~---~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE------------KIGPGDEFILEKLKK---VKTP 115 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC------------CCChhHHHHHHHHhh---cCCC
Confidence 34789999999975432 234446789999999999853 111112222222221 2579
Q ss_pred EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283 257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336 (358)
Q Consensus 257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni 336 (358)
+++|+||+|+...+ ....+..+. +... .....++.+||+++.|+
T Consensus 116 vilVlNKiDl~~~~----------------------~~l~~~~~~----l~~~----------~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 116 VILVLNKIDLVKDK----------------------EELLPLLEE----LSEL----------MDFAEIVPISALKGDNV 159 (292)
T ss_pred EEEEEECCcCCCCH----------------------HHHHHHHHH----HHhh----------CCCCeEEEecCCCCCCH
Confidence 99999999996321 011111111 1111 01234567888888888
Q ss_pred HHHHHHHHHHH
Q 018283 337 KKTFKLVDETL 347 (358)
Q Consensus 337 ~~vf~~i~~~i 347 (358)
.++++.+.+.+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 88888877665
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.29 E-value=3e-11 Score=119.17 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=68.9
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccc-cchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ-KNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
...+.+|||+|++.|..-...-...++++|+|+|.++ .. .....+.+..+.. ....|+++++||+
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~--------~~~~~~t~~~l~~l~~------~~i~~iiVVlNK~ 149 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE--------PCPQPQTKEHLMALDI------IGIKNIVIVQNKI 149 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC--------CCCChhHHHHHHHHHH------cCCCcEEEEEEee
Confidence 3688999999999886644444456799999999752 11 1111222222221 1224789999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+..+.... ...++...++... ....+.++.+||++++|+.++|+.+.
T Consensus 150 Dl~~~~~~~-------------------~~~~~i~~~l~~~-------------~~~~~~ii~vSA~~g~gI~~L~~~L~ 197 (411)
T PRK04000 150 DLVSKERAL-------------------ENYEQIKEFVKGT-------------VAENAPIIPVSALHKVNIDALIEAIE 197 (411)
T ss_pred ccccchhHH-------------------HHHHHHHHHhccc-------------cCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 985421000 0011112211100 01135678899999999999999988
Q ss_pred HHH
Q 018283 345 ETL 347 (358)
Q Consensus 345 ~~i 347 (358)
+.+
T Consensus 198 ~~l 200 (411)
T PRK04000 198 EEI 200 (411)
T ss_pred HhC
Confidence 765
No 214
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.28 E-value=3.8e-11 Score=119.21 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=71.5
Q ss_pred cccceEEEEEecCCC--------chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQ--------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq--------~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|. +.++..+..++++++++|||+|.++ .....-.+...++.. .+
T Consensus 43 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~--------~~~~~d~~i~~~l~~-------~~ 107 (429)
T TIGR03594 43 EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE--------GLTPEDEEIAKWLRK-------SG 107 (429)
T ss_pred EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC--------CCCHHHHHHHHHHHH-------hC
Confidence 345567999999996 5566778889999999999999741 111111122233322 25
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|+++|+||+|+..... ...+ |..+ + .-.++.+||+.+.
T Consensus 108 ~piilVvNK~D~~~~~~----------------------~~~~--------~~~l-----g------~~~~~~vSa~~g~ 146 (429)
T TIGR03594 108 KPVILVANKIDGKKEDA----------------------VAAE--------FYSL-----G------FGEPIPISAEHGR 146 (429)
T ss_pred CCEEEEEECccCCcccc----------------------cHHH--------HHhc-----C------CCCeEEEeCCcCC
Confidence 79999999999854210 0111 1111 0 0135789999999
Q ss_pred hHHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETLR 348 (358)
Q Consensus 335 ni~~vf~~i~~~i~ 348 (358)
++.++++.+.+.+-
T Consensus 147 gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 147 GIGDLLDAILELLP 160 (429)
T ss_pred ChHHHHHHHHHhcC
Confidence 99999999887663
No 215
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.28 E-value=6.5e-11 Score=100.70 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=64.7
Q ss_pred EEEEEecCCC----------chhhhhHhhhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 188 VYRLFDVGGQ----------RNERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 188 ~l~i~D~~Gq----------~~~r~~w~~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
.+.+|||+|. +.+...+..|+.. ++++++++|.... ......+...++... +
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~-------~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG--------PTEIDLEMLDWLEEL-------G 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHc-------C
Confidence 8899999994 3456666677764 5678889886321 111112223333221 4
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++++||+|+....... ........++.. . .....++.+||+++.
T Consensus 111 ~~vi~v~nK~D~~~~~~~~-------------------~~~~~~~~~l~~----~----------~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 111 IPFLVVLTKADKLKKSELA-------------------KALKEIKKELKL----F----------EIDPPIILFSSLKGQ 157 (170)
T ss_pred CCEEEEEEchhcCChHHHH-------------------HHHHHHHHHHHh----c----------cCCCceEEEecCCCC
Confidence 7999999999985321100 001111111111 0 112346689999999
Q ss_pred hHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDET 346 (358)
Q Consensus 335 ni~~vf~~i~~~ 346 (358)
++.++++.+.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 216
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.26 E-value=3.8e-11 Score=123.22 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=73.3
Q ss_pred cccceEEEEEecCCCchhhhh------Hhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRK------WIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~------w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
..++..+++|||+|++++... +..|+. ++|++++|+|.++ ++..+.+..++.. .+
T Consensus 37 ~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~-------------ler~l~l~~ql~~----~~ 99 (591)
T TIGR00437 37 GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASN-------------LERNLYLTLQLLE----LG 99 (591)
T ss_pred EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCc-------------chhhHHHHHHHHh----cC
Confidence 345567899999999887654 566654 7899999999752 1223444444433 26
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|+++++||+|+.+++- ... + .+.+.++ ..+.++.|||++++
T Consensus 100 ~PiIIVlNK~Dl~~~~~---------------------i~~-d-~~~L~~~---------------lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 100 IPMILALNLVDEAEKKG---------------------IRI-D-EEKLEER---------------LGVPVVPTSATEGR 141 (591)
T ss_pred CCEEEEEehhHHHHhCC---------------------Chh-h-HHHHHHH---------------cCCCEEEEECCCCC
Confidence 89999999999865321 000 0 1111111 12457889999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
|++++|+.+.+..
T Consensus 142 Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 142 GIERLKDAIRKAI 154 (591)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 217
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.26 E-value=1.5e-10 Score=113.18 Aligned_cols=120 Identities=14% Similarity=0.193 Sum_probs=72.3
Q ss_pred eEEEEEecCCCchh-------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc-CCCCCCCcEE
Q 018283 187 EVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTSFM 258 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~-------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~ii 258 (358)
..+.++||+|...- ......++++++++++|+|++.++ ..+.+.+...+.+.+.. .+.+.+.|++
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~I 279 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRW 279 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEE
Confidence 46899999998531 122334678999999999986432 12233333334444332 2334568999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
||+||+|+..+. .+.+.++.+.+.+ .....++.+||+++++|.+
T Consensus 280 lVlNKiDl~~~~-----------------------el~~~l~~l~~~~-------------~~~~~Vi~ISA~tg~GIde 323 (390)
T PRK12298 280 LVFNKIDLLDEE-----------------------EAEERAKAIVEAL-------------GWEGPVYLISAASGLGVKE 323 (390)
T ss_pred EEEeCCccCChH-----------------------HHHHHHHHHHHHh-------------CCCCCEEEEECCCCcCHHH
Confidence 999999985321 1111122111111 0011356789999999999
Q ss_pred HHHHHHHHHHH
Q 018283 339 TFKLVDETLRR 349 (358)
Q Consensus 339 vf~~i~~~i~~ 349 (358)
+++.|.+.+-.
T Consensus 324 Ll~~I~~~L~~ 334 (390)
T PRK12298 324 LCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHhhh
Confidence 99999887643
No 218
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.24 E-value=9.6e-11 Score=109.02 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=57.7
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
.+.......+ ..++..+++|||+|+..|...+..+++.++++|+|+|.++ ... .....+++..
T Consensus 57 ~si~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~---------g~~--~~~~~i~~~~ 119 (267)
T cd04169 57 ISVTSSVMQF------EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK---------GVE--PQTRKLFEVC 119 (267)
T ss_pred CCeEEEEEEE------eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC---------Ccc--HHHHHHHHHH
Confidence 3444445566 6788999999999999998878888999999999999752 111 1112333322
Q ss_pred HcCCCCCCCcEEEEeeCCCchh
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
.. .++|+++++||+|+..
T Consensus 120 -~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 120 -RL---RGIPIITFINKLDREG 137 (267)
T ss_pred -Hh---cCCCEEEEEECCccCC
Confidence 21 3689999999999854
No 219
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.21 E-value=2.3e-10 Score=117.92 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=71.4
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEeeCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 264 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~NK~ 264 (358)
+..+.+|||+|++.|.+.....+.++|++++|+|..+ .-+..+.+.+..+ .. . ++| +++++||+
T Consensus 50 g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~il-~~--l-gi~~iIVVlNKi 114 (614)
T PRK10512 50 GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLAIL-QL--T-GNPMLTVALTKA 114 (614)
T ss_pred CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHHHH-HH--c-CCCeEEEEEECC
Confidence 4468999999999997777778899999999999731 1112222222222 21 1 244 68999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+.++. ..+...+-+.+.+.... -....++.+||++++|+.++++.+.
T Consensus 115 Dlv~~~-----------------------~~~~v~~ei~~~l~~~~---------~~~~~ii~VSA~tG~gI~~L~~~L~ 162 (614)
T PRK10512 115 DRVDEA-----------------------RIAEVRRQVKAVLREYG---------FAEAKLFVTAATEGRGIDALREHLL 162 (614)
T ss_pred ccCCHH-----------------------HHHHHHHHHHHHHHhcC---------CCCCcEEEEeCCCCCCCHHHHHHHH
Confidence 985321 11111222222222110 0124577899999999999999987
Q ss_pred HHH
Q 018283 345 ETL 347 (358)
Q Consensus 345 ~~i 347 (358)
+..
T Consensus 163 ~~~ 165 (614)
T PRK10512 163 QLP 165 (614)
T ss_pred Hhh
Confidence 654
No 220
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.21 E-value=3.7e-10 Score=115.74 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=47.4
Q ss_pred EEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 189 l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 267 (358)
+.+|||+||+.|+..|..++..+|++|+|+|.++ .-.....+.+.++. . .++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~--------g~~~qt~e~i~~~~---~----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINE--------GFQPQTIEAINILK---R----RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCC--------CCCHhHHHHHHHHH---H----cCCCEEEEEECcCCc
Confidence 7899999999999999999999999999999752 01111122222221 1 368999999999985
No 221
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.20 E-value=1.4e-09 Score=96.58 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=48.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~ 261 (358)
..++..+.+.||+|+..+..-...-...+|++|+|+|.+. ... ......+..+... +.| ++++.
T Consensus 61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~---------g~~--~~~~~~~~~~~~~----~~~~iIvvi 125 (195)
T cd01884 61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD---------GPM--PQTREHLLLARQV----GVPYIVVFL 125 (195)
T ss_pred cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC---------CCc--HHHHHHHHHHHHc----CCCcEEEEE
Confidence 5567788999999998886666666789999999999741 111 1222333333221 355 78999
Q ss_pred eCCCch
Q 018283 262 NKFDIF 267 (358)
Q Consensus 262 NK~Dl~ 267 (358)
||+|+.
T Consensus 126 NK~D~~ 131 (195)
T cd01884 126 NKADMV 131 (195)
T ss_pred eCCCCC
Confidence 999985
No 222
>PRK13351 elongation factor G; Reviewed
Probab=99.20 E-value=2.8e-10 Score=119.47 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=60.6
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.+.....+ ...+..+.+|||+|+..+...|..+++.+|++|+|+|.++ .... .....+..
T Consensus 58 ~~ti~~~~~~~------~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~~-~~~~~~~~ 120 (687)
T PRK13351 58 GITIESAATSC------DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQP-QTETVWRQ 120 (687)
T ss_pred CCCcccceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH-HHHHHHHH
Confidence 44555444555 5678899999999999999999999999999999999752 1111 12334443
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhh
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
+.. .++|+++|+||+|+...
T Consensus 121 ~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 121 ADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHh----cCCCEEEEEECCCCCCC
Confidence 322 26899999999998864
No 223
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.18 E-value=6.5e-10 Score=103.56 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.+|||+|+..+...+..+++.++++|+|+|.+.- .. ......+..+.. .++|+++|+|
T Consensus 60 ~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g----------~~-~~~~~~~~~~~~----~~~p~iivvN 124 (268)
T cd04170 60 EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG----------VE-VGTEKLWEFADE----AGIPRIIFIN 124 (268)
T ss_pred EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH----cCCCEEEEEE
Confidence 55678899999999999988999999999999999997521 11 122333433322 2579999999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|+.+
T Consensus 125 K~D~~~ 130 (268)
T cd04170 125 KMDRER 130 (268)
T ss_pred CCccCC
Confidence 999864
No 224
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.17 E-value=3.2e-10 Score=119.38 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=48.1
Q ss_pred cccceEEEEEecCCCchhhh----------hHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 183 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~----------~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
...+.++++||++|+.++.. .+..|+ ..+|++|+|+|.++ .+ ..+.++..+...
T Consensus 46 ~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~----------le---r~l~l~~ql~e~- 111 (772)
T PRK09554 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LE---RNLYLTLQLLEL- 111 (772)
T ss_pred EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc----------ch---hhHHHHHHHHHc-
Confidence 56678899999999987643 234454 48999999999742 12 223344444332
Q ss_pred CCCCCcEEEEeeCCCchh
Q 018283 251 CFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~ 268 (358)
+.|+++++||+|+.+
T Consensus 112 ---giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 112 ---GIPCIVALNMLDIAE 126 (772)
T ss_pred ---CCCEEEEEEchhhhh
Confidence 689999999999864
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.15 E-value=8.8e-10 Score=99.95 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
.++..+.+.|++|++.+.+-...... .+|++++|+|... .. .......+..+.. .+.|++++.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~---------g~--~~~d~~~l~~l~~----~~ip~ivvv 145 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA---------GI--IGMTKEHLGLALA----LNIPVFVVV 145 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC---------CC--cHHHHHHHHHHHH----cCCCEEEEE
Confidence 34668899999999988655444443 6899999999631 11 1223333433332 257999999
Q ss_pred eCCCchh
Q 018283 262 NKFDIFE 268 (358)
Q Consensus 262 NK~Dl~~ 268 (358)
||+|+..
T Consensus 146 NK~D~~~ 152 (224)
T cd04165 146 TKIDLAP 152 (224)
T ss_pred ECccccC
Confidence 9999854
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.15 E-value=1.9e-09 Score=105.83 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=47.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~ 261 (358)
..+...+.++||+|++.|.+....-...+|++|+|+|.++ .-...+.+.+..+... ++| ++++.
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~~----g~~~~Ivvi 135 (394)
T PRK12736 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQV----GVPYLVVFL 135 (394)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCEEEEEE
Confidence 4456788999999999886655555678899999999631 1112223333333221 466 78899
Q ss_pred eCCCch
Q 018283 262 NKFDIF 267 (358)
Q Consensus 262 NK~Dl~ 267 (358)
||+|+.
T Consensus 136 NK~D~~ 141 (394)
T PRK12736 136 NKVDLV 141 (394)
T ss_pred EecCCc
Confidence 999985
No 227
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.14 E-value=4.7e-10 Score=100.87 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=51.6
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.+.+.+.+|||+|+..+...+..++..++++|+|+|.+.- ... ....++..... .+.|+++++||
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~----------~~~-~~~~~~~~~~~----~~~p~iiviNK 132 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG----------VTS-NTERLIRHAIL----EGLPIVLVINK 132 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----cCCCEEEEEEC
Confidence 4568899999999999999999999999999999997521 111 12233333322 24799999999
Q ss_pred CCch
Q 018283 264 FDIF 267 (358)
Q Consensus 264 ~Dl~ 267 (358)
+|+.
T Consensus 133 ~D~~ 136 (213)
T cd04167 133 IDRL 136 (213)
T ss_pred cccC
Confidence 9985
No 228
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.12 E-value=1.6e-09 Score=105.26 Aligned_cols=80 Identities=26% Similarity=0.327 Sum_probs=53.3
Q ss_pred cCceeeEeeccCCCCcccceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHH
Q 018283 168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET 239 (358)
Q Consensus 168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~ 239 (358)
|-.+.+..+ +.+++.+++.||+|-+.-. .+...-.+.||.++||+|.+.. .. ...
T Consensus 252 TRDviee~i------~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~---------~~--~~d 314 (454)
T COG0486 252 TRDVIEEDI------NLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP---------LD--KED 314 (454)
T ss_pred ccceEEEEE------EECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC---------Cc--hhh
Confidence 334556677 8899999999999997431 1223356799999999997531 01 111
Q ss_pred HHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 240 KELFDWVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 240 ~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
...+. ....+.|+++|.||.||..+
T Consensus 315 ~~~~~-----~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 315 LALIE-----LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHH-----hcccCCCEEEEEechhcccc
Confidence 22222 12246899999999999764
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.11 E-value=2.3e-09 Score=95.28 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=68.9
Q ss_pred eEEEEEecCCCchhhhhHhhh-----hcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEE
Q 018283 187 EVYRLFDVGGQRNERRKWIHL-----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y-----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv 260 (358)
..+.+||++|.......-..| +.+++.+|+|.|- . +.+. ..+++.+... +.|+++|
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-----------~---~~~~d~~~~~~l~~~----~~~~ilV 113 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-----------R---FSSNDVKLAKAIQCM----GKKFYFV 113 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-----------C---CCHHHHHHHHHHHHh----CCCEEEE
Confidence 468999999985432222233 6788888887541 1 1112 2233333221 5799999
Q ss_pred eeCCCchhh--hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC--hhhH
Q 018283 261 LNKFDIFEK--KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD--PKLV 336 (358)
Q Consensus 261 ~NK~Dl~~e--ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d--~~ni 336 (358)
+||+|+... .... + ++ .+.++.++.+.....+....... ..-.+|.+|+.+ +-++
T Consensus 114 ~nK~D~~~~~~~~~~-~--------------~~-~~~~~~l~~i~~~~~~~~~~~~~-----~~p~v~~vS~~~~~~~~~ 172 (197)
T cd04104 114 RTKVDRDLSNEQRSK-P--------------RS-FNREQVLQEIRDNCLENLQEAGV-----SEPPVFLVSNFDPSDYDF 172 (197)
T ss_pred Eecccchhhhhhccc-c--------------cc-ccHHHHHHHHHHHHHHHHHHcCC-----CCCCEEEEeCCChhhcCh
Confidence 999998432 1100 0 01 23455666666666655532111 112467789984 5677
Q ss_pred HHHHHHHHHHHH
Q 018283 337 KKTFKLVDETLR 348 (358)
Q Consensus 337 ~~vf~~i~~~i~ 348 (358)
..+.+.+...+-
T Consensus 173 ~~l~~~~~~~l~ 184 (197)
T cd04104 173 PKLRETLLKDLP 184 (197)
T ss_pred HHHHHHHHHHhh
Confidence 777777666654
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.10 E-value=2.5e-09 Score=96.77 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=53.3
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.++..+.+|||+|++.|......+++.+|++|+|+|.++ . -...+...+..... .++|+++++||
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~---------g--~~~~t~~~l~~~~~----~~~p~ilviNK 134 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE---------G--VCVQTETVLRQALK----ERVKPVLVINK 134 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC---------C--CCHHHHHHHHHHHH----cCCCEEEEEEC
Confidence 457899999999999999999999999999999999742 1 11223344444433 25799999999
Q ss_pred CCchh
Q 018283 264 FDIFE 268 (358)
Q Consensus 264 ~Dl~~ 268 (358)
+|+..
T Consensus 135 iD~~~ 139 (222)
T cd01885 135 IDRLI 139 (222)
T ss_pred CCcch
Confidence 99863
No 231
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.08 E-value=1.5e-09 Score=101.07 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=53.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.+|||+|+..+...|..+++.++++|+|+|.++- .. ......+..+.. .++|+++|.|
T Consensus 60 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g---------~~--~~t~~~~~~~~~----~~~p~ivviN 124 (270)
T cd01886 60 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG---------VE--PQTETVWRQADR----YNVPRIAFVN 124 (270)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC---------CC--HHHHHHHHHHHH----cCCCEEEEEE
Confidence 56788999999999999999999999999999999997521 11 112333443322 2579999999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|+.+
T Consensus 125 K~D~~~ 130 (270)
T cd01886 125 KMDRTG 130 (270)
T ss_pred CCCCCC
Confidence 999864
No 232
>PRK13768 GTPase; Provisional
Probab=99.06 E-value=2.4e-09 Score=98.89 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=72.3
Q ss_pred eEEEEEecCCCch---hhhhHhhhhcC-----CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283 187 EVYRLFDVGGQRN---ERRKWIHLFEG-----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 187 ~~l~i~D~~Gq~~---~r~~w~~y~~~-----~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii 258 (358)
..+.+||++|+.. ++..|..+++. +++++||+|.+.. .....+.. ..++....... .+.|++
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~-------~~~~d~~~-~~~l~~~~~~~--~~~~~i 166 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA-------KTPSDFVS-LLLLALSVQLR--LGLPQI 166 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh-------CCHHHHHH-HHHHHHHHHHH--cCCCEE
Confidence 3689999999966 47777666554 7899999997421 11112111 12222111111 268999
Q ss_pred EEeeCCCchhhhhccCCCcccccccc------cccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKD------YQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~------y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
+++||+|+..+....... +++.+ ......| .. .+...-+.+.+... .....++.+||++
T Consensus 167 ~v~nK~D~~~~~~~~~~~---~~l~~~~~~~~~l~~~~~-~~-~~~~~~~~~~i~~~----------~~~~~vi~iSa~~ 231 (253)
T PRK13768 167 PVLNKADLLSEEELERIL---KWLEDPEYLLEELKLEKG-LQ-GLLSLELLRALEET----------GLPVRVIPVSAKT 231 (253)
T ss_pred EEEEhHhhcCchhHHHHH---HHHhCHHHHHHHHhcccc-hH-HHHHHHHHHHHHHH----------CCCCcEEEEECCC
Confidence 999999986431100000 00100 0000001 00 11222222223322 1123567799999
Q ss_pred hhhHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETL 347 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i 347 (358)
+++++++.+++.+.+
T Consensus 232 ~~gl~~L~~~I~~~l 246 (253)
T PRK13768 232 GEGFDELYAAIQEVF 246 (253)
T ss_pred CcCHHHHHHHHHHHc
Confidence 999999999987765
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.06 E-value=1.3e-09 Score=110.32 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=53.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+++|||+|+..|......+++.++++|+|+|.++ ... .....++... . ..++|+++|+|
T Consensus 75 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~---------gv~--~~t~~l~~~~-~---~~~iPiiv~iN 139 (526)
T PRK00741 75 PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK---------GVE--PQTRKLMEVC-R---LRDTPIFTFIN 139 (526)
T ss_pred EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCC---------CCC--HHHHHHHHHH-H---hcCCCEEEEEE
Confidence 6678999999999999998888889999999999999752 111 1123334332 2 13689999999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|+..
T Consensus 140 K~D~~~ 145 (526)
T PRK00741 140 KLDRDG 145 (526)
T ss_pred CCcccc
Confidence 999864
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.05 E-value=7.3e-09 Score=103.76 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=48.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~ 261 (358)
..++..+.++|++|++.|-+-...-...+|++|+|+|..+ .-.....+.+..+.. .++| ++++.
T Consensus 140 ~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~iIvvv 204 (478)
T PLN03126 140 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPNMVVFL 204 (478)
T ss_pred ecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCeEEEEE
Confidence 4566789999999999886666656678999999999631 112223333433322 1466 78899
Q ss_pred eCCCchh
Q 018283 262 NKFDIFE 268 (358)
Q Consensus 262 NK~Dl~~ 268 (358)
||+|+..
T Consensus 205 NK~Dl~~ 211 (478)
T PLN03126 205 NKQDQVD 211 (478)
T ss_pred ecccccC
Confidence 9999853
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.05 E-value=9.3e-09 Score=101.09 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=45.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE-EEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF-MLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i-ilv~ 261 (358)
..++..+.+|||+|++.|.+....-...+|++|+|+|..+ .-...+.+.+..+... ++|. ++++
T Consensus 71 ~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~~----gi~~iIvvv 135 (394)
T TIGR00485 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQV----GVPYIVVFL 135 (394)
T ss_pred cCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHHc----CCCEEEEEE
Confidence 5566789999999999886544444556799999999741 1112223333333221 4554 5789
Q ss_pred eCCCchh
Q 018283 262 NKFDIFE 268 (358)
Q Consensus 262 NK~Dl~~ 268 (358)
||+|+..
T Consensus 136 NK~Dl~~ 142 (394)
T TIGR00485 136 NKCDMVD 142 (394)
T ss_pred EecccCC
Confidence 9999853
No 236
>PRK12735 elongation factor Tu; Reviewed
Probab=99.03 E-value=7.9e-09 Score=101.59 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=45.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE-EEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM-LFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii-lv~ 261 (358)
..++..+.++||+|++.|.+-...-..++|++++|+|..+ .-.. ...+.+..+.. .++|.+ ++.
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~--------g~~~---qt~e~l~~~~~----~gi~~iivvv 135 (396)
T PRK12735 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD--------GPMP---QTREHILLARQ----VGVPYIVVFL 135 (396)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC--------CCch---hHHHHHHHHHH----cCCCeEEEEE
Confidence 4456688999999998776555555678899999999741 1111 22233333222 246754 679
Q ss_pred eCCCch
Q 018283 262 NKFDIF 267 (358)
Q Consensus 262 NK~Dl~ 267 (358)
||+|+.
T Consensus 136 NK~Dl~ 141 (396)
T PRK12735 136 NKCDMV 141 (396)
T ss_pred EecCCc
Confidence 999985
No 237
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.01 E-value=2.6e-09 Score=108.30 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=51.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+.++..+.+|||+|+..|......+++.+|++|+|+|.+. ... .....+++ ++.. .++|+++|+|
T Consensus 76 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~---------gv~--~~t~~l~~-~~~~---~~~PiivviN 140 (527)
T TIGR00503 76 PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAK---------GVE--TRTRKLME-VTRL---RDTPIFTFMN 140 (527)
T ss_pred eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCC---------CCC--HHHHHHHH-HHHh---cCCCEEEEEE
Confidence 6778999999999999888766678899999999999752 111 11223333 2222 3689999999
Q ss_pred CCCch
Q 018283 263 KFDIF 267 (358)
Q Consensus 263 K~Dl~ 267 (358)
|+|+.
T Consensus 141 KiD~~ 145 (527)
T TIGR00503 141 KLDRD 145 (527)
T ss_pred Ccccc
Confidence 99985
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.01 E-value=7.9e-09 Score=102.90 Aligned_cols=131 Identities=10% Similarity=0.114 Sum_probs=77.5
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccc--cccccccccccchHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKELF 243 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~--~d~~~~~~~~~~~l~~~~~~~ 243 (358)
.-|..+....| ...+..+++.|++||+.|.+.....+..+|++|+|+|.++ |.... .......+. +
T Consensus 70 GiTi~~~~~~~------~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~---~~~~qT~eh---~ 137 (447)
T PLN00043 70 GITIDIALWKF------ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI---SKDGQTREH---A 137 (447)
T ss_pred CceEEEEEEEe------cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceeccc---CCCchHHHH---H
Confidence 34444445556 6678899999999999999998999999999999999752 10000 000222222 2
Q ss_pred HHHHcCCCCCCC-cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce
Q 018283 244 DWVLKQPCFEKT-SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV 322 (358)
Q Consensus 244 ~~i~~~~~~~~~-~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 322 (358)
..+ .. .++ +++++.||+|+.... | .. ..+++..+-+...+..... ....
T Consensus 138 ~~~-~~---~gi~~iIV~vNKmD~~~~~--------------~----~~-~~~~~i~~ei~~~l~~~g~-------~~~~ 187 (447)
T PLN00043 138 LLA-FT---LGVKQMICCCNKMDATTPK--------------Y----SK-ARYDEIVKEVSSYLKKVGY-------NPDK 187 (447)
T ss_pred HHH-HH---cCCCcEEEEEEcccCCchh--------------h----hH-HHHHHHHHHHHHHHHHcCC-------Cccc
Confidence 221 11 134 578899999975211 0 00 2233334444433332210 1123
Q ss_pred EEEEEeeccChhhHHH
Q 018283 323 FKIYRTTALDPKLVKK 338 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~ 338 (358)
+.+..+||++|+||.+
T Consensus 188 ~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 188 IPFVPISGFEGDNMIE 203 (447)
T ss_pred ceEEEEeccccccccc
Confidence 6678899999999853
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.99 E-value=1.3e-08 Score=102.11 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=46.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.++||+|++.|.+....-...+|++|+|+|..+ .-.....+...+...+ . ..|++++.|
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~--------G~~~qt~~~~~l~~~l-g-----~~~iIvvvN 168 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK--------GVLDQTRRHSFIATLL-G-----IKHLVVAVN 168 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC--------CccccchHHHHHHHHh-C-----CCceEEEEE
Confidence 5566789999999999886554445689999999999742 1111111122222111 1 247899999
Q ss_pred CCCch
Q 018283 263 KFDIF 267 (358)
Q Consensus 263 K~Dl~ 267 (358)
|+|+.
T Consensus 169 KiD~~ 173 (474)
T PRK05124 169 KMDLV 173 (474)
T ss_pred eeccc
Confidence 99985
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.96 E-value=7.2e-09 Score=102.21 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=47.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.++||+|++.|-+....-...+|++|+|+|.++ .-.....+...+...+ ...+++++.|
T Consensus 76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~--------G~~~qt~~~~~~~~~~------~~~~iivviN 141 (406)
T TIGR02034 76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK--------GVLEQTRRHSYIASLL------GIRHVVLAVN 141 (406)
T ss_pred ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC--------CCccccHHHHHHHHHc------CCCcEEEEEE
Confidence 5567789999999999886555556789999999999641 1111111222222111 2346899999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|+..
T Consensus 142 K~D~~~ 147 (406)
T TIGR02034 142 KMDLVD 147 (406)
T ss_pred eccccc
Confidence 999853
No 241
>CHL00071 tufA elongation factor Tu
Probab=98.95 E-value=3.1e-08 Score=97.79 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=48.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~ 261 (358)
..++..+.+.||+|++.|-+....-...+|++++|+|... .-.....+.+..+.. .++| ++++.
T Consensus 71 ~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~g~~~iIvvv 135 (409)
T CHL00071 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----VGVPNIVVFL 135 (409)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEEEEE
Confidence 4566788999999998876666666788999999999631 111223333433322 1467 77899
Q ss_pred eCCCchh
Q 018283 262 NKFDIFE 268 (358)
Q Consensus 262 NK~Dl~~ 268 (358)
||+|+..
T Consensus 136 NK~D~~~ 142 (409)
T CHL00071 136 NKEDQVD 142 (409)
T ss_pred EccCCCC
Confidence 9999864
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.95 E-value=1.8e-08 Score=100.47 Aligned_cols=120 Identities=11% Similarity=0.140 Sum_probs=71.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccc--cccccccccccchHHHHHHHHHHHHcCCCCCCC-cEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT-SFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~--~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~iil 259 (358)
..++..+.+.|++|++.|-+-...-...+|++|+|+|.++ |..-. .......+.+.+... .++ ++++
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~---~~~~qT~eh~~~~~~-------~gi~~iiv 150 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGI---SKDGQTREHALLAFT-------LGVKQMIV 150 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceeccc---CCCccHHHHHHHHHH-------cCCCeEEE
Confidence 6677899999999999998877777889999999999741 00000 001222233332221 144 4789
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
+.||+|..... | ....+++..+-+...+...-. ....+.+..+||++++|+.+
T Consensus 151 ~vNKmD~~~~~--------------~-----~~~~~~~i~~~i~~~l~~~g~-------~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 151 CINKMDDKTVN--------------Y-----SQERYDEIKKEVSAYLKKVGY-------NPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEccccccch--------------h-----hHHHHHHHHHHHHHHHHhcCC-------CcccceEEEeecccCCCccc
Confidence 99999953210 0 002234444444444443210 11247788899999999863
No 243
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.4e-08 Score=95.41 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=75.7
Q ss_pred eeeEeeccCCCCcccceEEEEEecCCCchhhhh---------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283 171 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRK---------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241 (358)
Q Consensus 171 i~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~---------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~ 241 (358)
..+..| +..++++.+.||+|-+..+.. -..-.+.+|.|++|+|.-+ ....+-....+
T Consensus 306 aiea~v------~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~--------~~t~sd~~i~~ 371 (531)
T KOG1191|consen 306 AIEAQV------TVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEE--------SDTESDLKIAR 371 (531)
T ss_pred hheeEe------ecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccc--------cccccchHHHH
Confidence 346667 788999999999998762111 1223567999999999721 11111111112
Q ss_pred HHHHHH-----cCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCC
Q 018283 242 LFDWVL-----KQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAP 316 (358)
Q Consensus 242 ~~~~i~-----~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~ 316 (358)
.+...- ..+.....|++++.||.|+... +...+|-|..++...|
T Consensus 372 ~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~------~~~~~~~~~~~~~~~~------------------------- 420 (531)
T KOG1191|consen 372 ILETEGVGLVVIVNKMEKQRIILVANKSDLVSK------IPEMTKIPVVYPSAEG------------------------- 420 (531)
T ss_pred HHHHhccceEEEeccccccceEEEechhhccCc------cccccCCceecccccc-------------------------
Confidence 222221 1111245799999999998532 2222232222111111
Q ss_pred CCCCceEEEEE-eeccChhhHHHHHHHHHHHHHHh
Q 018283 317 DRVDRVFKIYR-TTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 317 ~~~~~~~~~~~-tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
.-.+.++. +|++++++++.+-..+.+.....
T Consensus 421 ---~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 421 ---RSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ---CcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 11234454 89999999999998888877653
No 244
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.93 E-value=1.4e-08 Score=84.78 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=64.9
Q ss_pred EEEecCCCchhhhhHhhh----hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 190 RLFDVGGQRNERRKWIHL----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 190 ~i~D~~Gq~~~r~~w~~y----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
.+.||+|.--+.+.+-+. -.+|+.|++|.|.++-. +.+- .-|..+ + +.|++=|.||.|
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~---------~~~p---P~fa~~-----f-~~pvIGVITK~D 100 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR---------SVFP---PGFASM-----F-NKPVIGVITKID 100 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC---------ccCC---chhhcc-----c-CCCEEEEEECcc
Confidence 457999987665554443 34899999999975321 1110 011121 2 479999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
+... +.+++.+.+|+...- -+. +|.+||.++++|+++.+.+.
T Consensus 101 l~~~----------------------~~~i~~a~~~L~~aG-------------~~~--if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 101 LPSD----------------------DANIERAKKWLKNAG-------------VKE--IFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Cccc----------------------hhhHHHHHHHHHHcC-------------CCC--eEEEECCCCcCHHHHHHHHh
Confidence 9721 134566666655431 122 48899999999999998875
No 245
>PRK09866 hypothetical protein; Provisional
Probab=98.92 E-value=3.2e-08 Score=100.02 Aligned_cols=117 Identities=11% Similarity=0.175 Sum_probs=70.9
Q ss_pred ceEEEEEecCCCchh-----hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283 186 GEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~-----r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv 260 (358)
...+.+.||+|-..- ...-...+.++|.|+||+|... .....+ ....+.+ .. ...+.|++++
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIlk~L-kk-~~K~~PVILV 295 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVREAI-LA-VGQSVPLYVL 295 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHHHHH-Hh-cCCCCCEEEE
Confidence 457789999998542 2234457889999999999631 001111 1222222 21 1123699999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
.||+|+.++. + ...+....++...+.... -..-.++.+||+.+.|+..+.
T Consensus 296 VNKIDl~dre--------------------e-ddkE~Lle~V~~~L~q~~---------i~f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 296 VNKFDQQDRN--------------------S-DDADQVRALISGTLMKGC---------ITPQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred EEcccCCCcc--------------------c-chHHHHHHHHHHHHHhcC---------CCCceEEEEeCCCCCCHHHHH
Confidence 9999984210 1 234555566554433211 112346779999999999999
Q ss_pred HHHHH
Q 018283 341 KLVDE 345 (358)
Q Consensus 341 ~~i~~ 345 (358)
+.|..
T Consensus 346 deI~~ 350 (741)
T PRK09866 346 HELAN 350 (741)
T ss_pred HHHHh
Confidence 98876
No 246
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.90 E-value=5e-09 Score=97.97 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.5
Q ss_pred cccEEEecCCCCChhHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~ 67 (358)
.++|+|+|.+|+|||||++.+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L 24 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTL 24 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHH
Confidence 579999999999999999987
No 247
>PRK12740 elongation factor G; Reviewed
Probab=98.90 E-value=2.5e-08 Score=104.53 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=61.7
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
|..|.+.....+ ..++..+.+|||+|+..+...|..+++.+|++|+|+|.++- . .......+.
T Consensus 44 rgiTi~~~~~~~------~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~-~~~~~~~~~ 106 (668)
T PRK12740 44 RGISITSAATTC------EWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------V-EPQTETVWR 106 (668)
T ss_pred cCCCeeeceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------c-CHHHHHHHH
Confidence 455666666666 66789999999999999988999999999999999997531 1 112233344
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
.+.. .+.|+++|+||+|+...
T Consensus 107 ~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 107 QAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHH----cCCCEEEEEECCCCCCC
Confidence 3332 25799999999998743
No 248
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.90 E-value=4.3e-08 Score=89.03 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=75.7
Q ss_pred cceEEEEEecCCC-chhhhhHhh-------hh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 185 SGEVYRLFDVGGQ-RNERRKWIH-------LF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 185 ~~~~l~i~D~~Gq-~~~r~~w~~-------y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
....+.+.||+|| +.|. |.. -+ ....+++||+|.. .+++...|-...-.--+++-. .+
T Consensus 114 ~~~~~~liDTPGQIE~Ft--WSAsGsIIte~lass~ptvv~YvvDt~-------rs~~p~tFMSNMlYAcSilyk---tk 181 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFT--WSASGSIITETLASSFPTVVVYVVDTP-------RSTSPTTFMSNMLYACSILYK---TK 181 (366)
T ss_pred cccCEEEEcCCCceEEEE--ecCCccchHhhHhhcCCeEEEEEecCC-------cCCCchhHHHHHHHHHHHHHh---cc
Confidence 3456778888888 3331 211 11 1346789999964 234444444444444555443 26
Q ss_pred CcEEEEeeCCCchhhhhccCCCccccccccccc---CCC----Cc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP---VST----GK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~---~~~----g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
.|+++++||+|+.+..... +|-.+|-. +.. +- ..+...+......|-. .+...
T Consensus 182 lp~ivvfNK~Dv~d~~fa~------eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~-------------~lrtv 242 (366)
T KOG1532|consen 182 LPFIVVFNKTDVSDSEFAL------EWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR-------------SLRTV 242 (366)
T ss_pred CCeEEEEecccccccHHHH------HHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh-------------hCceE
Confidence 7999999999997654321 45554410 000 00 1222233333333322 24456
Q ss_pred EeeccChhhHHHHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
.+||.+|.+..+.|..|...+-
T Consensus 243 ~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 243 GVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred EEecccCCcHHHHHHHHHHHHH
Confidence 6899999999999999877664
No 249
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.88 E-value=8.7e-09 Score=101.95 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=77.6
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+...+.|++..+..+-.-.+=.+.++++..|+++++ ....+++ ..|+-++++.... ..++||||||||
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~-------~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK 124 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD-------ESTVDRISTKWLPLIRQLFGD--YHETPVILVGNK 124 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCC-------hHHhhhhhhhhhhhhhcccCC--CccCCEEEEeec
Confidence 44557889998665555555677899999999998731 1222222 2344444443322 257999999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
.|+..... ...+.-+.=|-+.|.++- .++++||+.-.|+.++|...
T Consensus 125 ~d~~~~~~---------------------~s~e~~~~pim~~f~EiE-------------tciecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 125 SDNGDNEN---------------------NSDEVNTLPIMIAFAEIE-------------TCIECSALTLANVSELFYYA 170 (625)
T ss_pred cCCccccc---------------------cchhHHHHHHHHHhHHHH-------------HHHhhhhhhhhhhHhhhhhh
Confidence 99854321 111222333445555541 25679999999999999998
Q ss_pred HHHHH
Q 018283 344 DETLR 348 (358)
Q Consensus 344 ~~~i~ 348 (358)
.+.++
T Consensus 171 qKaVi 175 (625)
T KOG1707|consen 171 QKAVI 175 (625)
T ss_pred hheee
Confidence 88765
No 250
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=3.8e-09 Score=93.45 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=51.6
Q ss_pred cceEEEEEecCCCchh-----hhhHhhhhcCCcEEEEEEEccccccccccccc-cchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283 185 SGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ-KNRMMETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~-----r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~ii 258 (358)
+++.+.+||.|||+.+ +..-.+-|++++++|||+|++ +.+ ...++.-..-++.++++ .+...++
T Consensus 51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDve--------s~e~~~D~~~yqk~Le~ll~~--SP~AkiF 120 (295)
T KOG3886|consen 51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVE--------SREMEKDFHYYQKCLEALLQN--SPEAKIF 120 (295)
T ss_pred hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeecc--------chhhhhhHHHHHHHHHHHHhc--CCcceEE
Confidence 5588999999999965 334455789999999999984 111 12233333444555554 3467889
Q ss_pred EEeeCCCchhh
Q 018283 259 LFLNKFDIFEK 269 (358)
Q Consensus 259 lv~NK~Dl~~e 269 (358)
.+..|+||..+
T Consensus 121 ~l~hKmDLv~~ 131 (295)
T KOG3886|consen 121 CLLHKMDLVQE 131 (295)
T ss_pred EEEeechhccc
Confidence 99999999753
No 251
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.85 E-value=2e-08 Score=105.54 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=53.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.+|||+|+..+...+..+++.+|++|+|+|.++ . .. ......+..+.. .++|+++++|
T Consensus 71 ~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~---------g-~~-~~~~~~~~~~~~----~~~p~ivviN 135 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG---------G-VQ-PQSETVWRQANR----YEVPRIAFVN 135 (689)
T ss_pred EECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC---------C-CC-hhHHHHHHHHHH----cCCCEEEEEE
Confidence 5677899999999999998899999999999999999742 1 11 112333433322 2579999999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|+..
T Consensus 136 K~D~~~ 141 (689)
T TIGR00484 136 KMDKTG 141 (689)
T ss_pred CCCCCC
Confidence 999874
No 252
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=2.6e-08 Score=91.08 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=67.0
Q ss_pred EEEEEecCCCchhhhhHhhhh--------cCCcEEEEEEEccccccccccccccchHH-HHHHHHHHHHcCCCCCCCcEE
Q 018283 188 VYRLFDVGGQRNERRKWIHLF--------EGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~w~~y~--------~~~~~iIfv~dls~~d~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~ii 258 (358)
.+.++||+||-.+-..|..-. ...-++||++|.+.. .+...+- ..+-.+...++. +.|.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~-------~~~~~f~s~~L~s~s~~~~~----~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC-------SDPSKFVSSLLLSLSIMLRL----ELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG--------SSHHHHHHHHHHHHHHHHHH----TSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc-------cChhhHHHHHHHHHHHHhhC----CCCEE
Confidence 689999999988766666544 456689999997422 1222232 222223333332 68999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHH----HHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAY----EFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~----~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.++||+|+..+.... .-+|+.+. +...... +.+.....+++... .....++-.|+++++
T Consensus 161 nvlsK~Dl~~~~~~~----~l~~~~d~-------~~l~~~~~~~~~~l~~~i~~~l~~~------~~~~~f~pls~~~~~ 223 (238)
T PF03029_consen 161 NVLSKIDLLSKYLEF----ILEWFEDP-------DSLEDLLESDYKKLNEEIAELLDDF------GLVIRFIPLSSKDGE 223 (238)
T ss_dssp EEE--GGGS-HHHHH----HHHHHHSH-------HHHHHHHHT-HHHHHHHHHHHCCCC------SSS---EE-BTTTTT
T ss_pred EeeeccCcccchhHH----HHHHhcCh-------HHHHHHHHHHHHHHHHHHHHHHhhc------CCCceEEEEECCChH
Confidence 999999998743111 11344433 2222222 33333333333111 112257779999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
++..++..|.+.+
T Consensus 224 ~~~~L~~~id~a~ 236 (238)
T PF03029_consen 224 GMEELLAAIDKAN 236 (238)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 253
>PRK00049 elongation factor Tu; Reviewed
Probab=98.82 E-value=1.8e-07 Score=92.08 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=46.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE-EEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM-LFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii-lv~ 261 (358)
..++..+.+.||+|++.|..-...-...+|++++|+|..+ . -.....+.+..+.. .++|++ ++.
T Consensus 71 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~---------g--~~~qt~~~~~~~~~----~g~p~iiVvv 135 (396)
T PRK00049 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD---------G--PMPQTREHILLARQ----VGVPYIVVFL 135 (396)
T ss_pred cCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC---------C--CchHHHHHHHHHHH----cCCCEEEEEE
Confidence 4456788999999998775555555789999999999631 1 11222333333322 146865 689
Q ss_pred eCCCch
Q 018283 262 NKFDIF 267 (358)
Q Consensus 262 NK~Dl~ 267 (358)
||+|+.
T Consensus 136 NK~D~~ 141 (396)
T PRK00049 136 NKCDMV 141 (396)
T ss_pred eecCCc
Confidence 999985
No 254
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=9.2e-08 Score=92.94 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=76.3
Q ss_pred cccceEEEEEecCCCchhhhhHh-----------hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWI-----------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~-----------~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
..++-.+.+.||+|-++-.+... .-.+.++.+++|+|.++ .-.+.-.....-+..
T Consensus 222 e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~ia~~i~~--- 287 (444)
T COG1160 222 ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRIAGLIEE--- 287 (444)
T ss_pred EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHHHHHHHH---
Confidence 66778899999999876544333 12346899999999641 222222333434433
Q ss_pred CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 331 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~ 331 (358)
.+.+++++.||-|+.++.- ...++..+-|..+|..+ .....+++||+
T Consensus 288 -~g~~~vIvvNKWDl~~~~~---------------------~~~~~~k~~i~~~l~~l-----------~~a~i~~iSA~ 334 (444)
T COG1160 288 -AGRGIVIVVNKWDLVEEDE---------------------ATMEEFKKKLRRKLPFL-----------DFAPIVFISAL 334 (444)
T ss_pred -cCCCeEEEEEccccCCchh---------------------hHHHHHHHHHHHHhccc-----------cCCeEEEEEec
Confidence 2679999999999875410 12233333444444322 12457889999
Q ss_pred ChhhHHHHHHHHHHHHH
Q 018283 332 DPKLVKKTFKLVDETLR 348 (358)
Q Consensus 332 d~~ni~~vf~~i~~~i~ 348 (358)
++.++..+|+.+.+..-
T Consensus 335 ~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 335 TGQGLDKLFEAIKEIYE 351 (444)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999999999887653
No 255
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.81 E-value=6.5e-08 Score=100.69 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=46.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.++||+|++.|-+....-...+|++|+|+|.++ .-.....+...+...+ ...+++++.|
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~--------g~~~~t~e~~~~~~~~------~~~~iivvvN 165 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK--------GVLTQTRRHSFIASLL------GIRHVVLAVN 165 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC--------CccccCHHHHHHHHHh------CCCeEEEEEE
Confidence 5567788999999999876555556789999999999741 1111111222222221 2357899999
Q ss_pred CCCch
Q 018283 263 KFDIF 267 (358)
Q Consensus 263 K~Dl~ 267 (358)
|+|+.
T Consensus 166 K~D~~ 170 (632)
T PRK05506 166 KMDLV 170 (632)
T ss_pred ecccc
Confidence 99985
No 256
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.80 E-value=4.3e-08 Score=95.22 Aligned_cols=108 Identities=24% Similarity=0.282 Sum_probs=67.6
Q ss_pred ccceEEEEEecCCCch---------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 184 KSGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~---------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
..+..|.+.||||-+. .+.+...-...||++|||+|.- ...... -+.+-.++.. .+
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~---------~Git~~---D~~ia~~Lr~---~~ 112 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGR---------EGITPA---DEEIAKILRR---SK 112 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCC---------CCCCHH---HHHHHHHHHh---cC
Confidence 3456699999999863 2445555678999999999962 111221 1222222221 25
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|++|+.||+|-..+.. .+.+ |..+.. -.++-+||..|.
T Consensus 113 kpviLvvNK~D~~~~e~-------------------------~~~e-----fyslG~-----------g~~~~ISA~Hg~ 151 (444)
T COG1160 113 KPVILVVNKIDNLKAEE-------------------------LAYE-----FYSLGF-----------GEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEcccCchhhh-------------------------hHHH-----HHhcCC-----------CCceEeehhhcc
Confidence 89999999999753211 0111 112110 123558999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
|+.++.++|.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999988875
No 257
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.80 E-value=3.5e-08 Score=104.00 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=52.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+..+..+.+|||+|+..|.......++.+|++|+|+|..+ .. ...+...+..+.. .+.|+++|+|
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~---------g~--~~~t~~~~~~~~~----~~~p~ivviN 146 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE---------GV--MPQTETVLRQALK----ENVKPVLFIN 146 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC---------CC--CccHHHHHHHHHH----cCCCEEEEEE
Confidence 5667899999999999988888889999999999999741 11 1122333433322 2468889999
Q ss_pred CCCchh
Q 018283 263 KFDIFE 268 (358)
Q Consensus 263 K~Dl~~ 268 (358)
|+|...
T Consensus 147 KiD~~~ 152 (720)
T TIGR00490 147 KVDRLI 152 (720)
T ss_pred Chhccc
Confidence 999864
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=98.78 E-value=4e-07 Score=90.70 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=51.5
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.......| ...+..+.+.||+|++.|-.....-...+|++++|+|..+ . -.....+.+..
T Consensus 109 GiTi~~~~~~~------~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~---------g--~~~qt~e~l~~ 171 (447)
T PLN03127 109 GITIATAHVEY------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD---------G--PMPQTKEHILL 171 (447)
T ss_pred CceeeeeEEEE------cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC---------C--CchhHHHHHHH
Confidence 34444445556 5566788999999998775444444567999999999631 1 11222333333
Q ss_pred HHcCCCCCCCc-EEEEeeCCCchh
Q 018283 246 VLKQPCFEKTS-FMLFLNKFDIFE 268 (358)
Q Consensus 246 i~~~~~~~~~~-iilv~NK~Dl~~ 268 (358)
+.. .++| ++++.||+|+.+
T Consensus 172 ~~~----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 172 ARQ----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHH----cCCCeEEEEEEeeccCC
Confidence 322 1467 578899999863
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.77 E-value=3.3e-07 Score=81.19 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=46.6
Q ss_pred cccceEEEEEecCCCchh-------h----hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGGQRNE-------R----RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~-------r----~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.++||+|-... . +.+.....+++++|||+++..+ ...-...++++..++....
T Consensus 45 ~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~ 115 (196)
T cd01852 45 VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKV 115 (196)
T ss_pred EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHh
Confidence 345678999999996432 1 1122234689999999997532 2223445666666554322
Q ss_pred CCCCcEEEEeeCCCchh
Q 018283 252 FEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~ 268 (358)
-.++++++|+.|-..
T Consensus 116 --~~~~ivv~T~~d~l~ 130 (196)
T cd01852 116 --LDHTIVLFTRGDDLE 130 (196)
T ss_pred --HhcEEEEEECccccC
Confidence 137888899988654
No 260
>COG1159 Era GTPase [General function prediction only]
Probab=98.76 E-value=1.7e-07 Score=86.57 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=44.2
Q ss_pred cceEEEEEecCCCchhhhhH--------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283 185 SGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 256 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w--------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 256 (358)
+...+.+.||+|-..-+..- ..-+.+||.++||+|..+ ......+ ..++.+ .. .++|
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~---------~~~~~d~--~il~~l-k~---~~~p 116 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE---------GWGPGDE--FILEQL-KK---TKTP 116 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc---------cCCccHH--HHHHHH-hh---cCCC
Confidence 46788999999986543332 224678999999999742 1222111 122222 21 3579
Q ss_pred EEEEeeCCCchhh
Q 018283 257 FMLFLNKFDIFEK 269 (358)
Q Consensus 257 iilv~NK~Dl~~e 269 (358)
++++.||.|....
T Consensus 117 vil~iNKID~~~~ 129 (298)
T COG1159 117 VILVVNKIDKVKP 129 (298)
T ss_pred eEEEEEccccCCc
Confidence 9999999998643
No 261
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.72 E-value=9e-08 Score=77.31 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=40.1
Q ss_pred cccceEEEEEecCCCchh---------hhhHhhhhcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF 252 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~---------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~ 252 (358)
......+.++||+|-... .......+..++++|||+|.+. .. ......++.+ +
T Consensus 43 ~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l-~---- 105 (116)
T PF01926_consen 43 EYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL-K---- 105 (116)
T ss_dssp EETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH-H----
T ss_pred eeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH-h----
Confidence 345667789999996421 1122333478999999999631 11 1223333444 2
Q ss_pred CCCcEEEEeeC
Q 018283 253 EKTSFMLFLNK 263 (358)
Q Consensus 253 ~~~~iilv~NK 263 (358)
.+.|+++|+||
T Consensus 106 ~~~~~i~v~NK 116 (116)
T PF01926_consen 106 NKKPIILVLNK 116 (116)
T ss_dssp TTSEEEEEEES
T ss_pred cCCCEEEEEcC
Confidence 46899999998
No 262
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.71 E-value=4.1e-07 Score=86.63 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.9
Q ss_pred cceEEEEEecCCC----chhhhh---HhhhhcCCcEEEEEEEccc
Q 018283 185 SGEVYRLFDVGGQ----RNERRK---WIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 185 ~~~~l~i~D~~Gq----~~~r~~---w~~y~~~~~~iIfv~dls~ 222 (358)
..+.+++|||+|+ +..+.+ ...++++||++|+|+|+++
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4578999999998 445544 3445899999999999974
No 263
>PRK12739 elongation factor G; Reviewed
Probab=98.66 E-value=1.7e-07 Score=98.47 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=54.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.++||+|+..+..-|...++.+|++|+|+|.++ ... ......+..+.. .+.|++++.|
T Consensus 69 ~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~---------g~~--~qt~~i~~~~~~----~~~p~iv~iN 133 (691)
T PRK12739 69 FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS---------GVE--PQSETVWRQADK----YGVPRIVFVN 133 (691)
T ss_pred EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC---------CCC--HHHHHHHHHHHH----cCCCEEEEEE
Confidence 5677899999999999998899999999999999999742 111 122334444332 2579999999
Q ss_pred CCCchhh
Q 018283 263 KFDIFEK 269 (358)
Q Consensus 263 K~Dl~~e 269 (358)
|+|+..+
T Consensus 134 K~D~~~~ 140 (691)
T PRK12739 134 KMDRIGA 140 (691)
T ss_pred CCCCCCC
Confidence 9999753
No 264
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5e-07 Score=89.09 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=85.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+++.+.+++.||+||-.|+.--..-+.-|+++|+|||.+ ..-...+...|...+.. +..+|.|.|
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~-----------qGvqAQT~anf~lAfe~----~L~iIpVlN 185 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDAS-----------QGVQAQTVANFYLAFEA----GLAIIPVLN 185 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcC-----------cCchHHHHHHHHHHHHc----CCeEEEeee
Confidence 356799999999999999888888888999999999953 33344445555555443 568899999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+ +.++...-+.+.|... .-.+.+.|||.|.|+.+++++
T Consensus 186 KIDlp~a------------------------dpe~V~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~A 229 (650)
T KOG0462|consen 186 KIDLPSA------------------------DPERVENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEA 229 (650)
T ss_pred ccCCCCC------------------------CHHHHHHHHHHHhcCC------------ccceEEEEeccCccHHHHHHH
Confidence 9999654 3455666666666432 114567899999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
|.+.|
T Consensus 230 II~rV 234 (650)
T KOG0462|consen 230 IIRRV 234 (650)
T ss_pred HHhhC
Confidence 98876
No 265
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.61 E-value=6e-07 Score=89.51 Aligned_cols=116 Identities=11% Similarity=0.115 Sum_probs=70.9
Q ss_pred eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
..+.+.|++|++.|-+-...-...+|++++|+|..+- .......+.+..... +.-.+++++.||+|+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-------~~~~qT~ehl~i~~~------lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-------CPQPQTSEHLAAVEI------MKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-------ccchhhHHHHHHHHH------cCCCcEEEEEecccc
Confidence 4678999999998866655566789999999997420 011112222222211 122478999999998
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
.... ..++..+.+.+.+.... ...+.++.+||++++|+..+.+.+.+.
T Consensus 184 v~~~-----------------------~~~~~~~ei~~~l~~~~---------~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 184 VKEA-----------------------QAQDQYEEIRNFVKGTI---------ADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred cCHH-----------------------HHHHHHHHHHHHHHhhc---------cCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 6321 11222222332222111 123567889999999999999888764
Q ss_pred H
Q 018283 347 L 347 (358)
Q Consensus 347 i 347 (358)
+
T Consensus 232 l 232 (460)
T PTZ00327 232 I 232 (460)
T ss_pred C
Confidence 4
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=4.6e-07 Score=86.93 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=80.4
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
|..|+.+....| ......|+|.|+.|++.|-+....-...||+.|+|+|.+.- +...-=.-.....+..-+..
T Consensus 69 rGvTi~~~~~~f------et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La~ 141 (428)
T COG5256 69 RGVTIDVAHSKF------ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLAR 141 (428)
T ss_pred cceEEEEEEEEe------ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHHHH
Confidence 456666777778 77788999999999999988888888899999999997521 00000001122223222222
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 324 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~ 324 (358)
. +.-..++++.||+|+.+-.. +.+++..+-+.. +.... +- ....+.
T Consensus 142 t------lGi~~lIVavNKMD~v~wde---------------------~rf~ei~~~v~~-l~k~~----G~--~~~~v~ 187 (428)
T COG5256 142 T------LGIKQLIVAVNKMDLVSWDE---------------------ERFEEIVSEVSK-LLKMV----GY--NPKDVP 187 (428)
T ss_pred h------cCCceEEEEEEcccccccCH---------------------HHHHHHHHHHHH-HHHHc----CC--CccCCe
Confidence 2 12347899999999864110 223443333333 22211 10 122466
Q ss_pred EEEeeccChhhHHH
Q 018283 325 IYRTTALDPKLVKK 338 (358)
Q Consensus 325 ~~~tSA~d~~ni~~ 338 (358)
+.=+||..|+|+.+
T Consensus 188 FIPiSg~~G~Nl~~ 201 (428)
T COG5256 188 FIPISGFKGDNLTK 201 (428)
T ss_pred EEecccccCCcccc
Confidence 66799999999865
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.58 E-value=7e-07 Score=83.38 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=58.4
Q ss_pred cCceeeEeeccCCCCcccceEEEEEecCCCch----hhhhH----hhhhc-CCcEEEEEEEccccccccccccccchHHH
Q 018283 168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN----ERRKW----IHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMME 238 (358)
Q Consensus 168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~----~r~~w----~~y~~-~~~~iIfv~dls~~d~~~~~~~~~~~l~~ 238 (358)
|-|+..-.| ..+...+++.||+|--. +|.-. ..-.+ =.++|+|++|.|+ ..--.+++
T Consensus 202 TK~i~vGhf------e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se--------~cgy~lE~ 267 (346)
T COG1084 202 TKGIHVGHF------ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSE--------TCGYSLEE 267 (346)
T ss_pred ccceeEeee------ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc--------ccCCCHHH
Confidence 456666666 77888999999999721 11111 11122 2568999999974 45567788
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
-..+|+++... +. .|+++|.||.|+.+
T Consensus 268 Q~~L~~eIk~~--f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 268 QISLLEEIKEL--FK-APIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHHHHHh--cC-CCeEEEEecccccc
Confidence 88999998643 44 89999999999863
No 268
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.50 E-value=6.6e-06 Score=78.63 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=65.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+..+..+.|.||+|-..-- .....-+|.+++|.+. ..-+.+.... ..++. ..-++|.|
T Consensus 145 ~~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p----------~~gd~iq~~k---~gi~E------~aDIiVVN 202 (332)
T PRK09435 145 EAAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLP----------GAGDELQGIK---KGIME------LADLIVIN 202 (332)
T ss_pred hccCCCEEEEECCCCccch---hHHHHhCCEEEEEecC----------CchHHHHHHH---hhhhh------hhheEEee
Confidence 4456788999999976322 2246679999999752 1122221111 11222 12379999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+... .........+...+.-.. +........++.+||++++||+++++.
T Consensus 203 KaDl~~~-----------------------~~a~~~~~el~~~L~l~~-----~~~~~w~~pVi~vSA~~g~GIdeL~~~ 254 (332)
T PRK09435 203 KADGDNK-----------------------TAARRAAAEYRSALRLLR-----PKDPGWQPPVLTCSALEGEGIDEIWQA 254 (332)
T ss_pred hhcccch-----------------------hHHHHHHHHHHHHHhccc-----ccccCCCCCEEEEECCCCCCHHHHHHH
Confidence 9998642 112333333333332211 000011124678999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
|.+.+-
T Consensus 255 I~~~~~ 260 (332)
T PRK09435 255 IEDHRA 260 (332)
T ss_pred HHHHHH
Confidence 988653
No 269
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=3.5e-07 Score=90.34 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=76.8
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
..-.+.+.||+||+.|-.+...=..=+|.+|+|+|.. +--.....++++..+. .++|+++..||+
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~d--------DGv~pQTiEAI~hak~-------a~vP~iVAiNKi 117 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAAD--------DGVMPQTIEAINHAKA-------AGVPIVVAINKI 117 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEcc--------CCcchhHHHHHHHHHH-------CCCCEEEEEecc
Confidence 3457899999999999888887777789999999972 3334444555444433 379999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|..+... .+.. ....+ ..+..+.| .+.+.+.-+||++|+||.++++.+.
T Consensus 118 Dk~~~np----~~v~-------------~el~~-~gl~~E~~-------------gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 118 DKPEANP----DKVK-------------QELQE-YGLVPEEW-------------GGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred cCCCCCH----HHHH-------------HHHHH-cCCCHhhc-------------CCceEEEEeeccCCCCHHHHHHHHH
Confidence 9874321 1000 00000 01111111 3446677799999999999998876
Q ss_pred HHH
Q 018283 345 ETL 347 (358)
Q Consensus 345 ~~i 347 (358)
-.-
T Consensus 167 l~a 169 (509)
T COG0532 167 LLA 169 (509)
T ss_pred HHH
Confidence 544
No 270
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.48 E-value=3.9e-06 Score=77.98 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=66.5
Q ss_pred EEEEecCCC----chhhh---hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH-cCCCCCCCcEEEE
Q 018283 189 YRLFDVGGQ----RNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL-KQPCFEKTSFMLF 260 (358)
Q Consensus 189 l~i~D~~Gq----~~~r~---~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~-~~~~~~~~~iilv 260 (358)
+.+-|++|- ..-|- ......+.++.++||+|+|.+.. .+-++....++.++- -...+.+.|.++|
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~yek~L~~rp~liV 318 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELELYEKGLADRPALIV 318 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHHHhhhhccCceEEE
Confidence 888898875 22222 34445668999999999985522 233333333333321 1234567899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+.++. .+++.+-...+ + .-+++..||+.++++..+.
T Consensus 319 aNKiD~~eae----------------------------~~~l~~L~~~l----q-------~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 319 ANKIDLPEAE----------------------------KNLLSSLAKRL----Q-------NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred EeccCchhHH----------------------------HHHHHHHHHHc----C-------CCcEEEeeeccccchHHHH
Confidence 9999996431 11111111111 0 1145678999999999988
Q ss_pred HHHHH
Q 018283 341 KLVDE 345 (358)
Q Consensus 341 ~~i~~ 345 (358)
+.+..
T Consensus 360 ~~lr~ 364 (366)
T KOG1489|consen 360 NGLRE 364 (366)
T ss_pred HHHhh
Confidence 87654
No 271
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2.7e-06 Score=86.48 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=77.2
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchh------hhhHhhhhc--CCcEEEEEEEccccccccccccccchHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE------RRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMME 238 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~------r~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~ 238 (358)
.|+-.++-.+ ..++-.+++.|++|-.+. -...++|.. ++|.+|-|+|.+ .++.
T Consensus 36 vTVEkkeg~~------~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAt-------------nLeR 96 (653)
T COG0370 36 VTVEKKEGKL------KYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDAT-------------NLER 96 (653)
T ss_pred eeEEEEEEEE------EecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccc-------------hHHH
Confidence 3444555555 566677999999998654 334555653 679999999963 3444
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCC
Q 018283 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDR 318 (358)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~ 318 (358)
.+.+.-+++.- +.|+++++|+.|..+.+-.. -|.++-.+
T Consensus 97 nLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~-------------------ID~~~L~~------------------ 135 (653)
T COG0370 97 NLYLTLQLLEL----GIPMILALNMIDEAKKRGIR-------------------IDIEKLSK------------------ 135 (653)
T ss_pred HHHHHHHHHHc----CCCeEEEeccHhhHHhcCCc-------------------ccHHHHHH------------------
Confidence 55555555543 67999999999986553111 12222111
Q ss_pred CCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 319 VDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 319 ~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
.-.+....|+|+.|++++++.+.+.+.
T Consensus 136 -~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 136 -LLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred -HhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 113566789999999998888877653
No 272
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.46 E-value=2.2e-06 Score=82.64 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=57.8
Q ss_pred eEEEEEecCCCchhhhhHhhhhc-----CCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEE
Q 018283 187 EVYRLFDVGGQRNERRKWIHLFE-----GVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y~~-----~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv 260 (358)
-.+.+||++|-..-+-....|+. ..|.+|++.+ +++.+. ..+...+-. .++|+++|
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--------------~rf~~ndv~La~~i~~----~gK~fyfV 147 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--------------ERFTENDVQLAKEIQR----MGKKFYFV 147 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--------------SS--HHHHHHHHHHHH----TT-EEEEE
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--------------CCCchhhHHHHHHHHH----cCCcEEEE
Confidence 35799999998766666666765 4566666654 444444 444455533 26899999
Q ss_pred eeCCCc--hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh--H
Q 018283 261 LNKFDI--FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL--V 336 (358)
Q Consensus 261 ~NK~Dl--~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n--i 336 (358)
-+|.|. ..++-.. | .. -..++..+-|++.+.+.++...- ..-.+|.+|..+-.. .
T Consensus 148 RTKvD~Dl~~~~~~~-p--------~~-------f~~e~~L~~IR~~c~~~L~k~gv-----~~P~VFLVS~~dl~~yDF 206 (376)
T PF05049_consen 148 RTKVDSDLYNERRRK-P--------RT-------FNEEKLLQEIRENCLENLQKAGV-----SEPQVFLVSSFDLSKYDF 206 (376)
T ss_dssp E--HHHHHHHHHCC--S--------TT---------HHTHHHHHHHHHHHHHHCTT------SS--EEEB-TTTTTSTTH
T ss_pred EecccccHhhhhccC-C--------cc-------cCHHHHHHHHHHHHHHHHHHcCC-----CcCceEEEeCCCcccCCh
Confidence 999995 3332111 1 00 12244555555555554432111 123467788886553 4
Q ss_pred HHHHHHHHHH
Q 018283 337 KKTFKLVDET 346 (358)
Q Consensus 337 ~~vf~~i~~~ 346 (358)
..+.+.+.+.
T Consensus 207 p~L~~tL~~d 216 (376)
T PF05049_consen 207 PKLEETLEKD 216 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 273
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.46 E-value=3.6e-06 Score=74.96 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=22.4
Q ss_pred EEEEEeeccChhhHHHHHHHHHHHHH
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
..+++|||++|+|++++|+++.+..+
T Consensus 171 ~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 171 KPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45789999999999999999987653
No 274
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=4.5e-07 Score=83.38 Aligned_cols=97 Identities=8% Similarity=0.203 Sum_probs=63.0
Q ss_pred chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCc
Q 018283 198 RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277 (358)
Q Consensus 198 ~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~ 277 (358)
++++.+.+.|+++++++++|+|+++ ...++.....|+..+ .. .++|++||+||+||..++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~---------p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~------ 84 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVL---------PELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDED------ 84 (245)
T ss_pred cccceEECcccccCCEEEEEEECCC---------CCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHH------
Confidence 5677777889999999999999852 111333333334333 21 4689999999999953211
Q ss_pred ccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 278 ~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
... +++ +.|.. ..+.++++||++++||+++|+.+.+
T Consensus 85 -----------------~~~--~~~-~~~~~------------~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 85 -----------------MEK--EQL-DIYRN------------IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -----------------HHH--HHH-HHHHH------------CCCeEEEEecCCchhHHHHHhhhcC
Confidence 110 111 12221 1256788999999999999998764
No 275
>PTZ00416 elongation factor 2; Provisional
Probab=98.41 E-value=1.7e-06 Score=92.64 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=51.0
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
++..+.+.||+|+..|-.-...-.+.+|++|+|+|.++ ... ......++.+... +.|+++|.||+
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~---------g~~--~~t~~~~~~~~~~----~~p~iv~iNK~ 154 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE---------GVC--VQTETVLRQALQE----RIRPVLFINKV 154 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC---------CcC--ccHHHHHHHHHHc----CCCEEEEEECh
Confidence 46789999999999887777778899999999999641 111 1233455555442 57999999999
Q ss_pred Cch
Q 018283 265 DIF 267 (358)
Q Consensus 265 Dl~ 267 (358)
|+.
T Consensus 155 D~~ 157 (836)
T PTZ00416 155 DRA 157 (836)
T ss_pred hhh
Confidence 997
No 276
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.41 E-value=4.1e-06 Score=77.45 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=73.3
Q ss_pred cccceEEEEEecCCCchh---hhh---------HhhhhcCCcEEEEEEEccccccccccccccchHH-HHHHHHHHHHcC
Q 018283 183 KKSGEVYRLFDVGGQRNE---RRK---------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQ 249 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~---r~~---------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~-~~~~~~~~i~~~ 249 (358)
..+...+.++||+|--.- |+- ..+-..+||+++.|+|.++ .++-+. ..+..++..
T Consensus 116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~y--- 183 (379)
T KOG1423|consen 116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA---------TRTPLHPRVLHMLEEY--- 183 (379)
T ss_pred ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC---------CcCccChHHHHHHHHH---
Confidence 456788999999996321 111 1123457999999999863 222221 123333333
Q ss_pred CCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE----EE
Q 018283 250 PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF----KI 325 (358)
Q Consensus 250 ~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~----~~ 325 (358)
.+.|-+|+.||.|....|..-.++... - ..| .+....--+.++|...-..+..+ ..-.+ .+
T Consensus 184 ---s~ips~lvmnkid~~k~k~~Ll~l~~~-----L---t~g--~l~~~kl~v~~~f~~~p~~~~~~--~~~gwshfe~v 248 (379)
T KOG1423|consen 184 ---SKIPSILVMNKIDKLKQKRLLLNLKDL-----L---TNG--ELAKLKLEVQEKFTDVPSDEKWR--TICGWSHFERV 248 (379)
T ss_pred ---hcCCceeeccchhcchhhhHHhhhHHh-----c---ccc--ccchhhhhHHHHhccCCcccccc--cccCcccceeE
Confidence 357889999999988765322121110 0 011 11111222334443221000000 00011 35
Q ss_pred EEeeccChhhHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i 347 (358)
|.+||+.|++|+++=+++....
T Consensus 249 F~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 249 FMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred EEEecccccCHHHHHHHHHhcC
Confidence 7799999999999988877654
No 277
>PRK00007 elongation factor G; Reviewed
Probab=98.41 E-value=4.2e-06 Score=88.09 Aligned_cols=72 Identities=11% Similarity=0.035 Sum_probs=51.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..++..+.+.||+|+..|-.-...-.+.+|++|+|+|.++ .. .......+..+... +.|++++.|
T Consensus 71 ~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~---------g~--~~qt~~~~~~~~~~----~~p~iv~vN 135 (693)
T PRK00007 71 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG---------GV--EPQSETVWRQADKY----KVPRIAFVN 135 (693)
T ss_pred EECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC---------Cc--chhhHHHHHHHHHc----CCCEEEEEE
Confidence 5567899999999998776555556788999999999631 11 22234444444332 578999999
Q ss_pred CCCchhh
Q 018283 263 KFDIFEK 269 (358)
Q Consensus 263 K~Dl~~e 269 (358)
|+|+.++
T Consensus 136 K~D~~~~ 142 (693)
T PRK00007 136 KMDRTGA 142 (693)
T ss_pred CCCCCCC
Confidence 9998753
No 278
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.37 E-value=2.7e-06 Score=91.19 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=51.6
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+..+++.||+|+..|-.-...-.+.+|++|+|+|.+ .... ..+...++.+... +.|++++.||+
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~---------~Gv~--~~t~~~~~~~~~~----~~p~i~~iNK~ 160 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI---------EGVC--VQTETVLRQALGE----RIRPVLTVNKM 160 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECC---------CCCc--ccHHHHHHHHHHC----CCCEEEEEECC
Confidence 4678899999999999777777789999999999964 1211 1233455555443 67999999999
Q ss_pred Cch
Q 018283 265 DIF 267 (358)
Q Consensus 265 Dl~ 267 (358)
|+.
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 997
No 279
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.36 E-value=5.2e-06 Score=78.00 Aligned_cols=122 Identities=15% Similarity=0.230 Sum_probs=71.9
Q ss_pred eEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc-CCCCCCCcEE
Q 018283 187 EVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTSFM 258 (358)
Q Consensus 187 ~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~ii 258 (358)
-+|.+-|++|-= ..--......+.+..+++|+|+|..+. .+-.++...+..++-. ++.+.+.|.+
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~i 279 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRI 279 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceE
Confidence 457888887651 112234445678899999999975432 1222222222222221 3556788999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
|++||+|+.... +..+...+++.+.+. ....+| +||.++++++.
T Consensus 280 vv~NKiD~~~~~----------------------e~~~~~~~~l~~~~~-------------~~~~~~-ISa~t~~g~~~ 323 (369)
T COG0536 280 VVLNKIDLPLDE----------------------EELEELKKALAEALG-------------WEVFYL-ISALTREGLDE 323 (369)
T ss_pred EEEeccCCCcCH----------------------HHHHHHHHHHHHhcC-------------CCccee-eehhcccCHHH
Confidence 999999954221 122333333332221 112222 99999999999
Q ss_pred HHHHHHHHHHHhh
Q 018283 339 TFKLVDETLRRRH 351 (358)
Q Consensus 339 vf~~i~~~i~~~~ 351 (358)
+...+.+.+-...
T Consensus 324 L~~~~~~~l~~~~ 336 (369)
T COG0536 324 LLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988876553
No 280
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=4.8e-06 Score=81.06 Aligned_cols=114 Identities=12% Similarity=0.106 Sum_probs=75.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+++.+.|++.||+|+-.|.---..-+..|.++++|||.| ..--..++..+-..+.+ +.-|+-|.|
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAs-----------QGveAQTlAN~YlAle~----~LeIiPViN 136 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS-----------QGVEAQTLANVYLALEN----NLEIIPVLN 136 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECc-----------cchHHHHHHHHHHHHHc----CcEEEEeee
Confidence 457899999999999888665566677899999999964 11112223333333333 567899999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||+.+ +.++..+-|.+-+. + + .-....+|||+|.||.+++++
T Consensus 137 KIDLP~A------------------------dpervk~eIe~~iG-i-----d------~~dav~~SAKtG~gI~~iLe~ 180 (603)
T COG0481 137 KIDLPAA------------------------DPERVKQEIEDIIG-I-----D------ASDAVLVSAKTGIGIEDVLEA 180 (603)
T ss_pred cccCCCC------------------------CHHHHHHHHHHHhC-C-----C------cchheeEecccCCCHHHHHHH
Confidence 9999754 22333333333221 0 0 112456899999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
|++.|
T Consensus 181 Iv~~i 185 (603)
T COG0481 181 IVEKI 185 (603)
T ss_pred HHhhC
Confidence 98876
No 281
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.34 E-value=1.9e-05 Score=69.35 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=63.5
Q ss_pred EEEEecCCC------chhhhhHh----hhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 189 YRLFDVGGQ------RNERRKWI----HLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 189 l~i~D~~Gq------~~~r~~w~----~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
+.+.|++|= ...+..|. +|+++ -.+++.++|.-. .....+ .+.++-+.. .+.
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~---------~~~~~D--~em~~~l~~----~~i 136 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARH---------PPKDLD--REMIEFLLE----LGI 136 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCC---------CCcHHH--HHHHHHHHH----cCC
Confidence 789999873 33455554 46653 467788888631 111111 133333322 268
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++++||+|-... .........+.+.+.- .+ ....+ +..+|+..+.+
T Consensus 137 ~~~vv~tK~DKi~~-----------------------~~~~k~l~~v~~~l~~------~~--~~~~~-~~~~ss~~k~G 184 (200)
T COG0218 137 PVIVVLTKADKLKK-----------------------SERNKQLNKVAEELKK------PP--PDDQW-VVLFSSLKKKG 184 (200)
T ss_pred CeEEEEEccccCCh-----------------------hHHHHHHHHHHHHhcC------CC--Cccce-EEEEecccccC
Confidence 99999999996432 1122223333333221 11 11222 66788888999
Q ss_pred HHHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETLR 348 (358)
Q Consensus 336 i~~vf~~i~~~i~ 348 (358)
++++-..|...+.
T Consensus 185 i~~l~~~i~~~~~ 197 (200)
T COG0218 185 IDELKAKILEWLK 197 (200)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776653
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.31 E-value=1.2e-05 Score=74.01 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.4
Q ss_pred HHHhhccccEEEecCCCCChhHHHHHH
Q 018283 41 TKAEKHIQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 41 ~~~~~~~~killlG~~~sGKSTi~kq~ 67 (358)
++.....++|+|+|.+|+||||+++.+
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaL 51 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSI 51 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHH
Confidence 345567899999999999999999986
No 283
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.30 E-value=3.5e-06 Score=82.46 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=82.8
Q ss_pred cccceEEEEEecCCCch----hhhhHhhhh-----cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRN----ERRKWIHLF-----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~----~r~~w~~y~-----~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
+.+-..+++.||+|--. .|......- .=-.+|+|+.|+|+ ..--++.+-..+|++|- |.|.
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe--------~CGySva~QvkLfhsIK--pLFa 280 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE--------MCGYSVAAQVKLYHSIK--PLFA 280 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh--------hhCCCHHHHHHHHHHhH--HHhc
Confidence 55557889999998621 122211111 11357999999984 44567788899999984 6789
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
|.|+|+++||+|+..- +++.+.-+-+.....+ +..+.++.||+.+-
T Consensus 281 NK~~IlvlNK~D~m~~-----------------------edL~~~~~~ll~~~~~-----------~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 281 NKVTILVLNKIDAMRP-----------------------EDLDQKNQELLQTIID-----------DGNVKVVQTSCVQE 326 (620)
T ss_pred CCceEEEeecccccCc-----------------------cccCHHHHHHHHHHHh-----------ccCceEEEecccch
Confidence 9999999999998531 2222222222222221 22367889999999
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 018283 334 KLVKKTFKLVDETLRRRH 351 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~~~ 351 (358)
+||-.|=...++.++...
T Consensus 327 egVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 327 EGVMDVRTTACEALLAAR 344 (620)
T ss_pred hceeeHHHHHHHHHHHHH
Confidence 999998888777777543
No 284
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.25 E-value=6.6e-06 Score=87.12 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=51.0
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+..+.+.||+|+..|........+.+|++|+|+|..+ .. .......+..+... +.|.+++.||
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~---------g~--~~~t~~~~~~~~~~----~~~~iv~iNK 148 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE---------GV--MPQTETVLRQALRE----RVKPVLFINK 148 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC---------CC--CccHHHHHHHHHHc----CCCeEEEEEC
Confidence 356789999999999988777788899999999999631 11 11233444443332 3577999999
Q ss_pred CCchhh
Q 018283 264 FDIFEK 269 (358)
Q Consensus 264 ~Dl~~e 269 (358)
+|+...
T Consensus 149 ~D~~~~ 154 (731)
T PRK07560 149 VDRLIK 154 (731)
T ss_pred chhhcc
Confidence 998644
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.25 E-value=2.1e-05 Score=70.65 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=43.0
Q ss_pred cccceEEEEEecCCCch-------hhhhHhh----hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGGQRN-------ERRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~-------~r~~w~~----y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.++||+|--. ....... +..+.+++|||+.++.|. +.-...++++..++....
T Consensus 45 ~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t---------~~~~~~l~~l~~~FG~~~ 115 (212)
T PF04548_consen 45 EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFT---------EEDREVLELLQEIFGEEI 115 (212)
T ss_dssp EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-S---------HHHHHHHHHHHHHHCGGG
T ss_pred eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcch---------HHHHHHHHHHHHHccHHH
Confidence 44667889999998421 1111222 345799999999985332 223345666777766443
Q ss_pred CCCCcEEEEeeCCCchh
Q 018283 252 FEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~ 268 (358)
. ..++||++..|-+.
T Consensus 116 ~--k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 116 W--KHTIVVFTHADELE 130 (212)
T ss_dssp G--GGEEEEEEEGGGGT
T ss_pred H--hHhhHHhhhccccc
Confidence 3 25777788777543
No 286
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.25 E-value=2.7e-06 Score=68.77 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=34.9
Q ss_pred hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 202 RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 202 ~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
.....+++++++++.|++.+ ..+++... |...+... ...+.|+++++||.|+.++
T Consensus 38 ~~~~~~~~s~~~~~~v~~~~----------~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 38 VYDPTSYESFDVVLQCWRVD----------DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEE 92 (124)
T ss_pred hccccccCCCCEEEEEEEcc----------CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhh
Confidence 33456788999999999863 34444332 44333322 1236789999999998543
No 287
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.3e-05 Score=81.56 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=83.8
Q ss_pred EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283 188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 267 (358)
-+.+.||.|+++|..+....-.-|+.+|+|+|+-. .-.....+++.+++. .++|+|+.+||.|.+
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImh--------GlepqtiESi~lLR~-------rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMH--------GLEPQTIESINLLRM-------RKTPFIVALNKIDRL 605 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhc--------cCCcchhHHHHHHHh-------cCCCeEEeehhhhhh
Confidence 46789999999999998888889999999999831 122344556665543 378999999999975
Q ss_pred hh-h-hccCCCcccccccccccCCCCc--ccHHHHHHHHHHHHHH------HhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 268 EK-K-VLKVPLNVCEWFKDYQPVSTGK--QEIENAYEFVKKKFEE------LYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 268 ~e-k-i~~~~l~~~~~f~~y~~~~~g~--~~~~~~~~~i~~~f~~------~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
-. + ....++... +.+. +.. ..+..-.+-|...|.+ ++..|.. ..+.+.+.-|||..|++|-
T Consensus 606 Ygwk~~p~~~i~~~--lkkQ----~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~---~~~~vsiVPTSA~sGeGip 676 (1064)
T KOG1144|consen 606 YGWKSCPNAPIVEA--LKKQ----KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKE---MGETVSIVPTSAISGEGIP 676 (1064)
T ss_pred cccccCCCchHHHH--HHHh----hHHHHHHHHHHHHHHHHHHHHcccchhheeeccc---ccceEEeeecccccCCCcH
Confidence 21 1 111111000 0000 010 1223333344444432 2222222 2344556669999999999
Q ss_pred HHHHHHHHHHHH
Q 018283 338 KTFKLVDETLRR 349 (358)
Q Consensus 338 ~vf~~i~~~i~~ 349 (358)
+++..++..-..
T Consensus 677 dLl~llv~ltQk 688 (1064)
T KOG1144|consen 677 DLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 999988876543
No 288
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.22 E-value=2e-05 Score=70.45 Aligned_cols=24 Identities=4% Similarity=0.026 Sum_probs=21.2
Q ss_pred EEEEEeeccChhhHHHHHHHHHHH
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
..++.+||++++|++++|+++.+.
T Consensus 182 ~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 182 AEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999998764
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.19 E-value=5.1e-05 Score=68.87 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEeeC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK 263 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~NK 263 (358)
.+..+.+.|++|.- ... ....+.+|.++||+|.+. .... .....+..+.. .+.| +++|+||
T Consensus 81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~---------~~~~--~~~~i~~~l~~----~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASF---------GFEM--ETFEFLNILQV----HGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCc---------CCCH--HHHHHHHHHHH----cCCCeEEEEEec
Confidence 45678899999863 222 233578999999999742 1111 11222333222 1356 4569999
Q ss_pred CCchh
Q 018283 264 FDIFE 268 (358)
Q Consensus 264 ~Dl~~ 268 (358)
.|+.+
T Consensus 143 ~D~~~ 147 (225)
T cd01882 143 LDLFK 147 (225)
T ss_pred cccCC
Confidence 99863
No 290
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2.5e-05 Score=77.34 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=73.3
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
++-++++.||+|+.-|..+...=-.-+|.+|+||+. |+.-.....+++. .. ...++|+++..||+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAa--------dDGVmpQT~EaIk---hA----k~A~VpiVvAinKi 263 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAA--------DDGVMPQTLEAIK---HA----KSANVPIVVAINKI 263 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEc--------cCCccHhHHHHHH---HH----HhcCCCEEEEEecc
Confidence 446789999999999988887666678899999985 2322333333333 32 22478999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|-.++.+. .++.-+...=..+ ..-.-.+.+..+||++|+|+..+-+++.
T Consensus 264 Dkp~a~pe------------------------kv~~eL~~~gi~~-------E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 264 DKPGANPE------------------------KVKRELLSQGIVV-------EDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred CCCCCCHH------------------------HHHHHHHHcCccH-------HHcCCceeEEEeecccCCChHHHHHHHH
Confidence 97654321 1111111100000 0012246778899999999999888765
Q ss_pred HH
Q 018283 345 ET 346 (358)
Q Consensus 345 ~~ 346 (358)
-.
T Consensus 313 l~ 314 (683)
T KOG1145|consen 313 LL 314 (683)
T ss_pred HH
Confidence 43
No 291
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.17 E-value=3e-05 Score=73.08 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred hhccccEEEecCCCCChhHHHHHH
Q 018283 44 EKHIQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 44 ~~~~~killlG~~~sGKSTi~kq~ 67 (358)
....++|+|+|.+|+||||+++.+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsI 58 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSI 58 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHH
Confidence 456889999999999999999986
No 292
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.16 E-value=3.5e-05 Score=70.65 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=76.9
Q ss_pred cceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283 185 SGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 257 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i 257 (358)
..-.+.+||++|-+. +|.+...|....|.++++.+..+ .-+.-...++..+.-.. -+.++
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~~--~~~~~ 151 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIILG--LDKRV 151 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHhc--cCcee
Confidence 345789999998865 78888899999998888888632 11112234455554422 13789
Q ss_pred EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
+++.|..|.... . +.| ++ .|........+|+.++-..+.+.... -++ ++..++-.+=|++
T Consensus 152 i~~VtQ~D~a~p-~-------~~W--~~----~~~~p~~a~~qfi~~k~~~~~~~~q~----V~p--V~~~~~r~~wgl~ 211 (296)
T COG3596 152 LFVVTQADRAEP-G-------REW--DS----AGHQPSPAIKQFIEEKAEALGRLFQE----VKP--VVAVSGRLPWGLK 211 (296)
T ss_pred EEEEehhhhhcc-c-------ccc--cc----ccCCCCHHHHHHHHHHHHHHHHHHhh----cCC--eEEeccccCccHH
Confidence 999999997431 1 233 12 12222334445555555444322111 122 3344556777888
Q ss_pred HHHHHHHHHH
Q 018283 338 KTFKLVDETL 347 (358)
Q Consensus 338 ~vf~~i~~~i 347 (358)
.+...++..+
T Consensus 212 ~l~~ali~~l 221 (296)
T COG3596 212 ELVRALITAL 221 (296)
T ss_pred HHHHHHHHhC
Confidence 8888877654
No 293
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.15 E-value=2.8e-05 Score=75.72 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=80.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..+++.++|.||+|+..|----..-..=+|+++++||.++ .-+-...-.++..+.. +.+-|+|.|
T Consensus 64 ~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~~----gL~PIVVvN 128 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALAL----GLKPIVVIN 128 (603)
T ss_pred ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHHc----CCCcEEEEe
Confidence 6788999999999999887777777788999999999642 2222222334444432 334567789
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh---------
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP--------- 333 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~--------- 333 (358)
|.|...++ .+++.+-....|.++... ..+-.+.+.|.||.+|
T Consensus 129 KiDrp~Ar------------------------p~~Vvd~vfDLf~~L~A~-----deQLdFPivYAS~~~G~a~~~~~~~ 179 (603)
T COG1217 129 KIDRPDAR------------------------PDEVVDEVFDLFVELGAT-----DEQLDFPIVYASARNGTASLDPEDE 179 (603)
T ss_pred CCCCCCCC------------------------HHHHHHHHHHHHHHhCCC-----hhhCCCcEEEeeccCceeccCcccc
Confidence 99987654 244555555667666321 1234466677787765
Q ss_pred -hhHHHHHHHHHHHH
Q 018283 334 -KLVKKTFKLVDETL 347 (358)
Q Consensus 334 -~ni~~vf~~i~~~i 347 (358)
.++.-+|+.|.+.+
T Consensus 180 ~~~m~pLfe~I~~hv 194 (603)
T COG1217 180 ADDMAPLFETILDHV 194 (603)
T ss_pred ccchhHHHHHHHHhC
Confidence 46788888877665
No 294
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.13 E-value=1.1e-05 Score=70.99 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=61.8
Q ss_pred hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccc
Q 018283 200 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVC 279 (358)
Q Consensus 200 ~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~ 279 (358)
++..|..|+++++++|+|+|+++++. ... ..+.. ...+.|+++|+||+|+..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~---~~l~~-----~~~~~~~ilV~NK~Dl~~~~--------- 77 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLI---PRLRL-----FGGNNPVILVGNKIDLLPKD--------- 77 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC---------ccc---hhHHH-----hcCCCcEEEEEEchhcCCCC---------
Confidence 78999999999999999999875321 111 11111 12357999999999985321
Q ss_pred ccccccccCCCCcccHHHHHHHHH-HHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 280 EWFKDYQPVSTGKQEIENAYEFVK-KKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 280 ~~f~~y~~~~~g~~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
........|.. ..+... . -....++.+||+++.|++++++.+.+.+
T Consensus 78 -------------~~~~~~~~~~~~~~~~~~-----~----~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 78 -------------KNLVRIKNWLRAKAAAGL-----G----LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -------------CCHHHHHHHHHHHHHhhc-----C----CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 11122222321 111110 0 0012367899999999999999998765
No 295
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.13 E-value=1.7e-05 Score=85.75 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred EEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 189 l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 267 (358)
+.+|||+||+.|.......+..+|++|+|+|.++ .-.....+++..+. . .++|+++++||+|+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~--------Gi~~qT~e~I~~lk---~----~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINE--------GFKPQTIEAINILR---Q----YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcc--------cCCHhHHHHHHHHH---H----cCCCEEEEEECCCCc
Confidence 8999999999998888888899999999999752 11111222233222 2 257999999999985
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.13 E-value=6.4e-05 Score=71.22 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEeeccChhhHHHHHHHHHHHH
Q 018283 324 KIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 324 ~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
.++.+||++++++.++++++.+..
T Consensus 214 ~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 214 PVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CEEEEEccCCCCHHHHHHHHHHHH
Confidence 367899999999999999998863
No 297
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.09 E-value=0.00011 Score=68.62 Aligned_cols=71 Identities=10% Similarity=0.194 Sum_probs=44.1
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
++|+++|.+|+|...--... .+| .++-++||.......-.+ .....++||++.+
T Consensus 222 Gi~vlVV~TK~D~~s~leke---------~ey---------rDehfdfiq~~lRkFCLr--------~GaaLiyTSvKE~ 275 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKE---------HEY---------RDEHFDFIQSHLRKFCLR--------YGAALIYTSVKET 275 (473)
T ss_pred CCcEEEEEeccchhhHhhhc---------chh---------hHHHHHHHHHHHHHHHHH--------cCceeEEeecccc
Confidence 47999999999985321100 022 233344444433322111 1245678999999
Q ss_pred hhHHHHHHHHHHHHHHh
Q 018283 334 KLVKKTFKLVDETLRRR 350 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~~ 350 (358)
.|++-++.+|+..+..-
T Consensus 276 KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 276 KNIDLLYKYIVHRSYGF 292 (473)
T ss_pred cchHHHHHHHHHHhcCc
Confidence 99999999998877643
No 298
>COG2262 HflX GTPases [General function prediction only]
Probab=98.07 E-value=0.00023 Score=68.69 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=64.7
Q ss_pred ceEEEEEecCCCchhhhhHhh-hh-------cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283 186 GEVYRLFDVGGQRNERRKWIH-LF-------EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 257 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~-y~-------~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i 257 (358)
+..+.+-||-|==+--+-|.- -| ..+|.++.|+|.|+ ..-...+..+.+.+..+ ...+.|+
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd-------p~~~~~~~~v~~vL~el----~~~~~p~ 307 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD-------PEILEKLEAVEDVLAEI----GADEIPI 307 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC-------hhHHHHHHHHHHHHHHc----CCCCCCE
Confidence 455677788774221111111 12 36899999999873 22223344444444444 3345899
Q ss_pred EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
++++||.|+....... ..... ..+ ....+||++++|++
T Consensus 308 i~v~NKiD~~~~~~~~----------------------~~~~~-------------------~~~-~~v~iSA~~~~gl~ 345 (411)
T COG2262 308 ILVLNKIDLLEDEEIL----------------------AELER-------------------GSP-NPVFISAKTGEGLD 345 (411)
T ss_pred EEEEecccccCchhhh----------------------hhhhh-------------------cCC-CeEEEEeccCcCHH
Confidence 9999999975431100 00000 001 24568999999999
Q ss_pred HHHHHHHHHHH
Q 018283 338 KTFKLVDETLR 348 (358)
Q Consensus 338 ~vf~~i~~~i~ 348 (358)
.+.+.|.+.+-
T Consensus 346 ~L~~~i~~~l~ 356 (411)
T COG2262 346 LLRERIIELLS 356 (411)
T ss_pred HHHHHHHHHhh
Confidence 99988888775
No 299
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.01 E-value=2.6e-05 Score=75.85 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=69.1
Q ss_pred CchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCC
Q 018283 197 QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPL 276 (358)
Q Consensus 197 q~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l 276 (358)
++.|+.+...|+++++.+++|+|+.++... + ...+...+ .+.|+++|+||+||....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---------~---~~~l~~~~-----~~~piilV~NK~DLl~k~------ 106 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS---------L---IPELKRFV-----GGNPVLLVGNKIDLLPKS------ 106 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC---------c---cHHHHHHh-----CCCCEEEEEEchhhCCCC------
Confidence 568888889999999999999998654321 1 12222222 257999999999995321
Q ss_pred cccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 277 NVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 277 ~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
...++..+|+.+.+.... -....++.+||+++.|++++|+.+.+.
T Consensus 107 ----------------~~~~~~~~~l~~~~k~~g---------~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 107 ----------------VNLSKIKEWMKKRAKELG---------LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ----------------CCHHHHHHHHHHHHHHcC---------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 224556667665554320 011246789999999999999998653
No 300
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.97 E-value=1.7e-05 Score=78.43 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+++...+.+.|.||.. -..|-.-++++||||.+ .+.+++.....++..+.....-...|+++++.
T Consensus 73 ~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~----------~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgt 137 (749)
T KOG0705|consen 73 DGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSV----------EDEQSFQAVQALAHEMSSYRNISDLPLILVGT 137 (749)
T ss_pred eccceEeeeecccCCc-----hhhhhhhccceEEEEEe----------ccccCHHHHHHHHhhcccccccccchHHhhcC
Confidence 7788889999999943 24566789999999997 56677766655555554433344678888887
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
+ |....+...+ ..-.++..... +.+.+.+|+|||+.|-|+..+|..
T Consensus 138 q-d~iS~~~~rv------------------~~da~~r~l~~---------------~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 138 Q-DHISAKRPRV------------------ITDDRARQLSA---------------QMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred c-chhhcccccc------------------cchHHHHHHHH---------------hcCccceeecchhhhhhHHHHHHH
Confidence 6 5444332211 11122222211 124577899999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+...++..
T Consensus 184 ~~~k~i~~ 191 (749)
T KOG0705|consen 184 VAQKIVQL 191 (749)
T ss_pred HHHHHHHH
Confidence 98887654
No 301
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.00022 Score=71.36 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=61.3
Q ss_pred eeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH
Q 018283 164 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243 (358)
Q Consensus 164 ~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~ 243 (358)
.|+-|+.+....| +.....++|.|.+|++.|-+-...=-..+|+.|+|+|.+ ++..-..-...+...+...++
T Consensus 238 erGvTm~v~~~~f------es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s-~~~FE~gfd~~gQtrEha~ll 310 (603)
T KOG0458|consen 238 ERGVTMDVKTTWF------ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAS-TGEFESGFDPGGQTREHALLL 310 (603)
T ss_pred hcceeEEeeeEEE------ecCceeEEEecCCCccccchhhhccccccceEEEEEECC-cchhhhccCCCCchHHHHHHH
Confidence 3455666667777 777888999999999988777666666789999999975 111100001223444444444
Q ss_pred HHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 244 DWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 244 ~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
..+ .-..+++..||+|+.+
T Consensus 311 r~L------gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 311 RSL------GISQLIVAINKMDLVS 329 (603)
T ss_pred HHc------CcceEEEEeecccccC
Confidence 443 2457899999999864
No 302
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.93 E-value=0.00025 Score=70.88 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=44.2
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
++||+||++|.|.... +... . +| -++-++||......+--+ .....+|||++..
T Consensus 196 Gipi~VV~tksD~~~~-Lek~----~----~~---------~~e~~DfIqq~LR~~cL~--------yGAsL~yts~~~~ 249 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIET-LEKE----T----DW---------KEEHFDFIQQYLRTFCLK--------YGASLIYTSVKEE 249 (472)
T ss_pred CcceEEEEecccHHHH-Hhhh----c----cc---------chhhHHHHHHHHHHHHHh--------cCCeEEEeecccc
Confidence 3799999999998652 2110 0 11 122344444333332211 2345677999999
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 018283 334 KLVKKTFKLVDETLRRRHL 352 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~~~~ 352 (358)
.|++.++.+|...+....+
T Consensus 250 ~n~~~L~~yi~h~l~~~~f 268 (472)
T PF05783_consen 250 KNLDLLYKYILHRLYGFPF 268 (472)
T ss_pred ccHHHHHHHHHHHhccCCC
Confidence 9999999998877765433
No 303
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.85 E-value=4.7e-05 Score=74.75 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=27.8
Q ss_pred cceEEEEEecCCC----chhhhhHhhh---hcCCcEEEEEEEcc
Q 018283 185 SGEVYRLFDVGGQ----RNERRKWIHL---FEGVSAVIFCAAIS 221 (358)
Q Consensus 185 ~~~~l~i~D~~Gq----~~~r~~w~~y---~~~~~~iIfv~dls 221 (358)
..+.+++||++|. ...+.+-..+ ++++|++++|+|.+
T Consensus 70 ~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 70 RFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred ceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3477999999994 3344433344 88999999999997
No 304
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00024 Score=63.89 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=74.0
Q ss_pred cceEEEEEecCCCchhhhh---HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEE
Q 018283 185 SGEVYRLFDVGGQRNERRK---WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFML 259 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~---w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iil 259 (358)
.-+.|.+||.+||-.+-.- ....|+++-+.|||+|. . ..+.+++.-+...+.. ..-+++.+=+
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDa-----------Q-ddy~eala~L~~~v~raykvNp~in~EV 140 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDA-----------Q-DDYMEALARLHMTVERAYKVNPNINFEV 140 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEec-----------h-HHHHHHHHHHHHHhhheeecCCCceEEE
Confidence 4478999999999765322 34468999999999984 2 3333444444333332 2235778889
Q ss_pred EeeCCCchhh--hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 260 FLNKFDIFEK--KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 260 v~NK~Dl~~e--ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
+..|.|-+.+ |+.. . . +-..++.+-+... +..+-.+.+|.||-.| ..|=
T Consensus 141 fiHKvDGLsdd~kiet-q---------r-------dI~qr~~d~l~d~-----------gle~v~vsf~LTSIyD-HSIf 191 (347)
T KOG3887|consen 141 FIHKVDGLSDDFKIET-Q---------R-------DIHQRTNDELADA-----------GLEKVQVSFYLTSIYD-HSIF 191 (347)
T ss_pred EEEeccCCchhhhhhh-H---------H-------HHHHHhhHHHHhh-----------hhccceEEEEEeeecc-hHHH
Confidence 9999998754 2211 0 0 0001111111111 1123468889899887 4677
Q ss_pred HHHHHHHHHHHH
Q 018283 338 KTFKLVDETLRR 349 (358)
Q Consensus 338 ~vf~~i~~~i~~ 349 (358)
++|..|+..++.
T Consensus 192 EAFSkvVQkLip 203 (347)
T KOG3887|consen 192 EAFSKVVQKLIP 203 (347)
T ss_pred HHHHHHHHHHhh
Confidence 888888777664
No 305
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.81 E-value=0.00055 Score=64.09 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=20.8
Q ss_pred EEEEEeeccChhhHHHHHHHHHHH
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
..++.+||+++++++++.+++.+.
T Consensus 264 a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 264 IEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999998763
No 306
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.74 E-value=9.1e-05 Score=62.94 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=57.9
Q ss_pred hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccc
Q 018283 200 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVC 279 (358)
Q Consensus 200 ~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~ 279 (358)
+|+++.++.+++|.+|+|+|.++.. ...+ ..+. ..... .+.|+++++||+|+..+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~------~~~~-----~~l~-~~~~~---~~~p~iiv~NK~Dl~~~~--------- 57 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPE------LTRS-----RKLE-RYVLE---LGKKLLIVLNKADLVPKE--------- 57 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCc------ccCC-----HHHH-HHHHh---CCCcEEEEEEhHHhCCHH---------
Confidence 4678899999999999999975311 0111 1111 11111 257999999999984321
Q ss_pred ccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283 280 EWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 280 ~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
... .+. .+... ....++.+||+++.+++++++.+.+.+-
T Consensus 58 --------------~~~---~~~--~~~~~-----------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 58 --------------VLE---KWK--SIKES-----------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --------------HHH---HHH--HHHHh-----------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 011 111 11110 1133577899999999999998877653
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.74 E-value=0.00034 Score=61.15 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=21.2
Q ss_pred EEEEEeeccChhhHHHHHHHHHHHH
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
..+++||++++++++++++++....
T Consensus 176 ~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 176 APIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4578899999999999999887654
No 308
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.001 Score=62.78 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=72.4
Q ss_pred CcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 182 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 182 ~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
.....+.+.+.|.+|+.+.-+-...--.-.|..|.|+|+.- .-.....+++-+=+.++ .-.++|.
T Consensus 65 pq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~k--------G~QtQtAEcLiig~~~c-------~klvvvi 129 (522)
T KOG0461|consen 65 PQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQK--------GKQTQTAECLIIGELLC-------KKLVVVI 129 (522)
T ss_pred CccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhc--------ccccccchhhhhhhhhc-------cceEEEE
Confidence 35677899999999998764443333333466788999731 12223334443332222 2357778
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh----hhHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP----KLVK 337 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~----~ni~ 337 (358)
||+|+..|.-.. ..+++..+-+++..+..-. +....+..+||++| +.|.
T Consensus 130 nkid~lpE~qr~-------------------ski~k~~kk~~KtLe~t~f--------~g~~PI~~vsa~~G~~~~~~i~ 182 (522)
T KOG0461|consen 130 NKIDVLPENQRA-------------------SKIEKSAKKVRKTLESTGF--------DGNSPIVEVSAADGYFKEEMIQ 182 (522)
T ss_pred eccccccchhhh-------------------hHHHHHHHHHHHHHHhcCc--------CCCCceeEEecCCCccchhHHH
Confidence 888886542111 2234444444444433211 22355778999999 7777
Q ss_pred HHHHHHHHHHH
Q 018283 338 KTFKLVDETLR 348 (358)
Q Consensus 338 ~vf~~i~~~i~ 348 (358)
++-+.+...|.
T Consensus 183 eL~e~l~s~if 193 (522)
T KOG0461|consen 183 ELKEALESRIF 193 (522)
T ss_pred HHHHHHHHhhc
Confidence 77777777664
No 309
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00046 Score=65.34 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=71.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH--HHHHHHcCCCCCCCcEEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE--LFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~~~iilv 260 (358)
....-+|.+-||+|++.|-+-...=-..|+.+|+++|. ...-++.+.. ..-+++ .=..++|.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA-----------R~Gvl~QTrRHs~I~sLL-----GIrhvvvA 145 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA-----------RKGVLEQTRRHSFIASLL-----GIRHVVVA 145 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec-----------chhhHHHhHHHHHHHHHh-----CCcEEEEE
Confidence 56778999999999999866655555678899999984 2233333322 122222 23578999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
.||+||.+ | -++.++-|...|..+...-. -+...+.=.||..|.||..
T Consensus 146 VNKmDLvd----------------y---------~e~~F~~I~~dy~~fa~~L~-----~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 146 VNKMDLVD----------------Y---------SEEVFEAIVADYLAFAAQLG-----LKDVRFIPISALLGDNVVS 193 (431)
T ss_pred Eeeecccc----------------c---------CHHHHHHHHHHHHHHHHHcC-----CCcceEEechhccCCcccc
Confidence 99999953 2 13445666777776653211 2234555689999999853
No 310
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00027 Score=66.24 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=29.3
Q ss_pred cccceEEEEEecCCC----chhh---hhHhhhhcCCcEEEEEEEcc
Q 018283 183 KKSGEVYRLFDVGGQ----RNER---RKWIHLFEGVSAVIFCAAIS 221 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq----~~~r---~~w~~y~~~~~~iIfv~dls 221 (358)
.+++..+++.|++|- ..-| +....--++||.||+|+|+.
T Consensus 106 ~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 106 EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVF 151 (365)
T ss_pred eecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecC
Confidence 567899999999843 3333 33455678999999999986
No 311
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.71 E-value=0.00025 Score=64.89 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=43.0
Q ss_pred cceEEEEEecCCCch-------------hhhhHhhhhcCC-cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 185 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~-------------~r~~w~~y~~~~-~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
.-..|.+.|++|-.. .+.+...|.++. +.+++|+|.. .+... .+.+++.+.+-.
T Consensus 123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~---------~d~~~-~d~l~ia~~ld~-- 190 (240)
T smart00053 123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPAN---------VDLAN-SDALKLAKEVDP-- 190 (240)
T ss_pred CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECC---------CCCCc-hhHHHHHHHHHH--
Confidence 346789999999742 234566688854 5788888752 11111 122333333311
Q ss_pred CCCCCcEEEEeeCCCchh
Q 018283 251 CFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~ 268 (358)
.+.++++|+||.|..+
T Consensus 191 --~~~rti~ViTK~D~~~ 206 (240)
T smart00053 191 --QGERTIGVITKLDLMD 206 (240)
T ss_pred --cCCcEEEEEECCCCCC
Confidence 3679999999999864
No 312
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00036 Score=56.51 Aligned_cols=99 Identities=18% Similarity=0.324 Sum_probs=63.0
Q ss_pred EEecCCCchhhhhHhhh----hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 191 LFDVGGQRNERRKWIHL----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 191 i~D~~Gq~~~r~~w~~y----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
..||.|---..+.|-+- ..+++.+++|-+..+ ...+ |-.-+.. ....|+|=+.+|.||
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and---------~~s~-------f~p~f~~--~~~k~vIgvVTK~DL 102 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAAND---------PESR-------FPPGFLD--IGVKKVIGVVTKADL 102 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccC---------cccc-------CCccccc--ccccceEEEEecccc
Confidence 35888877777777443 458899999987631 1111 1111111 123568889999999
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
.+. .+++.+..|+.+- + . =.+|++||.|..+++++++.+..
T Consensus 103 aed-----------------------~dI~~~~~~L~ea---------G----a--~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 103 AED-----------------------ADISLVKRWLREA---------G----A--EPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cch-----------------------HhHHHHHHHHHHc---------C----C--cceEEEeccCcccHHHHHHHHHh
Confidence 642 3456666665432 1 1 24678999999999999998754
No 313
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00016 Score=70.08 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=55.7
Q ss_pred eEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 173 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 173 e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
.+.| ++.+..+++.||+|++.|..-.-.-+-.+|++|.|+|.+ ..-=..++++|+ +|. +
T Consensus 73 VMqF------~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA-----------KGiE~qT~KLfe-Vcr---l 131 (528)
T COG4108 73 VMQF------DYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA-----------KGIEPQTLKLFE-VCR---L 131 (528)
T ss_pred EEEe------ccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecc-----------cCccHHHHHHHH-HHh---h
Confidence 4677 888999999999999988766655567899999999963 111123456664 444 3
Q ss_pred CCCcEEEEeeCCCch
Q 018283 253 EKTSFMLFLNKFDIF 267 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~ 267 (358)
.++||+-|.||.|..
T Consensus 132 R~iPI~TFiNKlDR~ 146 (528)
T COG4108 132 RDIPIFTFINKLDRE 146 (528)
T ss_pred cCCceEEEeeccccc
Confidence 589999999999964
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00046 Score=72.06 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=53.5
Q ss_pred ccc-ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKS-GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~-~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
..+ ...+++.||+||-.|-.--..-.+-+|++|.|+|.. ..-...+-..|+..... ++|.++|.
T Consensus 71 ~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdav-----------eGV~~QTEtv~rqa~~~----~vp~i~fi 135 (697)
T COG0480 71 FWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAV-----------EGVEPQTETVWRQADKY----GVPRILFV 135 (697)
T ss_pred EEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECC-----------CCeeecHHHHHHHHhhc----CCCeEEEE
Confidence 445 589999999999888777777788899999999863 12222334456665443 78999999
Q ss_pred eCCCchhh
Q 018283 262 NKFDIFEK 269 (358)
Q Consensus 262 NK~Dl~~e 269 (358)
||+|...+
T Consensus 136 NKmDR~~a 143 (697)
T COG0480 136 NKMDRLGA 143 (697)
T ss_pred ECcccccc
Confidence 99997654
No 315
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.44 E-value=0.00031 Score=48.97 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=31.1
Q ss_pred CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 211 VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 211 ~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
.++|+|++|+|+ ..--++++-..+|+++.. .+.+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se--------~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSE--------QCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT---------TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCC--------CCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 578999999984 344567888899999864 477899999999998
No 316
>PRK12289 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00085 Score=64.90 Aligned_cols=91 Identities=8% Similarity=0.076 Sum_probs=55.3
Q ss_pred HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccc
Q 018283 204 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFK 283 (358)
Q Consensus 204 w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~ 283 (358)
....+.++|.+++|+|+.+-+ .+...+.. ++..+ . ..++|++||+||+||..+
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~------~~~~~LdR---~L~~a-~---~~~ip~ILVlNK~DLv~~-------------- 135 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPP------LDPWQLSR---FLVKA-E---STGLEIVLCLNKADLVSP-------------- 135 (352)
T ss_pred echhhhcCCEEEEEEECCCCC------CCHHHHHH---HHHHH-H---HCCCCEEEEEEchhcCCh--------------
Confidence 344688999999999984210 01112222 22222 1 236899999999999532
Q ss_pred ccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 284 DYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 284 ~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
++...| ...|.. ..+.++.+||++++|++++++.+.+.
T Consensus 136 ------------~~~~~~-~~~~~~------------~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 136 ------------TEQQQW-QDRLQQ------------WGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ------------HHHHHH-HHHHHh------------cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 111112 222321 12457889999999999999988653
No 317
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00037 Score=70.55 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=55.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
.++..-+++.||.|+-.|-.-...-++-+|++++|+|..+ .-+...-.+++..+++ +.|++++.|
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq~----~~~i~vviN 257 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQN----RLPIVVVIN 257 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHhc----cCcEEEEEe
Confidence 5678889999999999998888888899999999999741 2222334455555554 679999999
Q ss_pred CCCchhh
Q 018283 263 KFDIFEK 269 (358)
Q Consensus 263 K~Dl~~e 269 (358)
|.|.+-.
T Consensus 258 KiDRLil 264 (971)
T KOG0468|consen 258 KVDRLIL 264 (971)
T ss_pred hhHHHHH
Confidence 9998644
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.32 E-value=0.0023 Score=65.77 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=43.9
Q ss_pred ccceEEEEEecCCCchh------hhh----Hhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 184 KSGEVYRLFDVGGQRNE------RRK----WIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~------r~~----w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
..+..+.++||+|-... ... ...++. +++++|||..++.+.. +.+ -..+++.+..++....
T Consensus 163 idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~e-D~~aLr~Iq~lFG~~I 235 (763)
T TIGR00993 163 VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSN-DLPLLRTITDVLGPSI 235 (763)
T ss_pred ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHH-HHHHHHHHHHHhCHHh
Confidence 34578999999998632 111 122444 5899999998743211 001 1134555656555332
Q ss_pred CCCCcEEEEeeCCCch
Q 018283 252 FEKTSFMLFLNKFDIF 267 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~ 267 (358)
. ..+||+++..|..
T Consensus 236 w--k~tIVVFThgD~l 249 (763)
T TIGR00993 236 W--FNAIVTLTHAASA 249 (763)
T ss_pred H--cCEEEEEeCCccC
Confidence 2 2578888888875
No 319
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.28 E-value=0.0007 Score=57.63 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=29.2
Q ss_pred hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 208 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 208 ~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
++++|.+++|+|.++.. ...-.. +...+.. ...+.|+++|+||+|+..
T Consensus 6 l~~aD~il~VvD~~~p~--------~~~~~~----i~~~l~~-~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 6 IDSSDVVIQVLDARDPM--------GTRCKH----VEEYLKK-EKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhCCEEEEEEECCCCc--------cccCHH----HHHHHHh-ccCCCCEEEEEEchhcCC
Confidence 57899999999985311 111111 2222221 123579999999999953
No 320
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.25 E-value=0.0012 Score=62.03 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.3
Q ss_pred cccEEEecCCCCChhHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~ 67 (358)
.++|+|+|.+|+|||||++-+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL 24 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTL 24 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999986
No 321
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.21 E-value=0.0053 Score=55.34 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=43.7
Q ss_pred cceEEEEEec-CCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 185 SGEVYRLFDV-GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 185 ~~~~l~i~D~-~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
....+.+.|| ||-+-|.+... +++|.+|.|+|- +..++.-+.+ .+.+.+.- .=.+|.+|+||
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDp-----------S~~sl~taer-i~~L~~el--g~k~i~~V~NK 194 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDP-----------SYKSLRTAER-IKELAEEL--GIKRIFVVLNK 194 (255)
T ss_pred ccCcEEEEecccchhhhccccc---cCCCEEEEEeCC-----------cHHHHHHHHH-HHHHHHHh--CCceEEEEEee
Confidence 3456788998 78887766554 699999999985 3444433322 33333321 12689999999
Q ss_pred CCch
Q 018283 264 FDIF 267 (358)
Q Consensus 264 ~Dl~ 267 (358)
.|-.
T Consensus 195 v~e~ 198 (255)
T COG3640 195 VDEE 198 (255)
T ss_pred ccch
Confidence 9954
No 322
>PRK00098 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.001 Score=62.99 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=51.5
Q ss_pred hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccccccc
Q 018283 208 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP 287 (358)
Q Consensus 208 ~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~ 287 (358)
..++|.+|+|+|+++- +...+.+..+ +..+ .. .++|+++|+||+||...+
T Consensus 78 aaniD~vllV~d~~~p------~~~~~~idr~---L~~~-~~---~~ip~iIVlNK~DL~~~~----------------- 127 (298)
T PRK00098 78 AANVDQAVLVFAAKEP------DFSTDLLDRF---LVLA-EA---NGIKPIIVLNKIDLLDDL----------------- 127 (298)
T ss_pred eecCCEEEEEEECCCC------CCCHHHHHHH---HHHH-HH---CCCCEEEEEEhHHcCCCH-----------------
Confidence 4899999999998420 0111222222 2222 21 368999999999985221
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 288 VSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 288 ~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
....+..+ .|.. ..+.++.+||++++|++++++.+..
T Consensus 128 -----~~~~~~~~----~~~~------------~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 128 -----EEARELLA----LYRA------------IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred -----HHHHHHHH----HHHH------------CCCeEEEEeCCCCccHHHHHhhccC
Confidence 11111111 1211 1245788999999999999987653
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.20 E-value=0.0037 Score=53.32 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=40.9
Q ss_pred ceEEEEEecCCCch----hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 186 GEVYRLFDVGGQRN----ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~----~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
...+.+.|++|-.. ....|..|...++++|||++.+. .-.+ .....+....... ...+++|.
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~--------~~~~---~~~~~l~~~~~~~---~~~~i~V~ 165 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ--------DLTE---SDMEFLKQMLDPD---KSRTIFVL 165 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS--------TGGG---HHHHHHHHHHTTT---CSSEEEEE
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc--------ccch---HHHHHHHHHhcCC---CCeEEEEE
Confidence 34679999998843 34779999999999999998631 1111 1233344443321 33488889
Q ss_pred eCC
Q 018283 262 NKF 264 (358)
Q Consensus 262 NK~ 264 (358)
||.
T Consensus 166 nk~ 168 (168)
T PF00350_consen 166 NKA 168 (168)
T ss_dssp E-G
T ss_pred cCC
Confidence 984
No 324
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0066 Score=59.25 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=70.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.+.|+.|++.+-+--..-....+.+++|+|.. +.-....-|.+..++.+ .....++++|
T Consensus 46 ~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~d--------eGl~~qtgEhL~iLdll------gi~~giivlt 111 (447)
T COG3276 46 KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAAD--------EGLMAQTGEHLLILDLL------GIKNGIIVLT 111 (447)
T ss_pred cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCc--------cCcchhhHHHHHHHHhc------CCCceEEEEe
Confidence 445558899999999987655555556889999999851 11223344444444333 3346799999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|..++.. +++.++-|..... + ....++-+||+.+++|.++=+.
T Consensus 112 k~D~~d~~r-----------------------~e~~i~~Il~~l~-l-----------~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 112 KADRVDEAR-----------------------IEQKIKQILADLS-L-----------ANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred ccccccHHH-----------------------HHHHHHHHHhhcc-c-----------ccccccccccccCCCHHHHHHH
Confidence 999975421 1222222211111 0 1123466888888888888777
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 77665
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.09 E-value=0.01 Score=55.36 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=25.4
Q ss_pred EEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCC
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l 357 (358)
-..+.|||..+++|.++++.|.+.. +.+++.|+
T Consensus 229 ppv~~t~A~~g~Gi~~L~~ai~~h~--~~~~~sg~ 261 (323)
T COG1703 229 PPVVTTSALEGEGIDELWDAIEDHR--KFLTESGL 261 (323)
T ss_pred CceeEeeeccCCCHHHHHHHHHHHH--HHHHhccc
Confidence 3467899999999999999998875 34555554
No 326
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.00 E-value=0.0021 Score=60.47 Aligned_cols=88 Identities=7% Similarity=-0.002 Sum_probs=52.5
Q ss_pred hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccccc
Q 018283 206 HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285 (358)
Q Consensus 206 ~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y 285 (358)
..+.++|.+++|+|+.+ .. -++...-.++..+.. .++|+++|+||+||..+.
T Consensus 74 ~i~anvD~vllV~d~~~--------p~-~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--------------- 125 (287)
T cd01854 74 VIAANVDQLVIVVSLNE--------PF-FNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--------------- 125 (287)
T ss_pred eEEEeCCEEEEEEEcCC--------CC-CCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH---------------
Confidence 34789999999999842 11 022222223333222 368999999999985321
Q ss_pred ccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 286 ~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+...+ ...+.. ..+.++.+||+++.++++++..+..
T Consensus 126 -----------~~~~~-~~~~~~------------~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 126 -----------EEELE-LVEALA------------LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----------HHHHH-HHHHHh------------CCCeEEEEECCCCccHHHHHhhhcc
Confidence 00011 111111 1245678999999999999887764
No 327
>PRK13796 GTPase YqeH; Provisional
Probab=97.00 E-value=0.0041 Score=60.63 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=58.4
Q ss_pred hhhhhHhhhhcCCc-EEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCc
Q 018283 199 NERRKWIHLFEGVS-AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277 (358)
Q Consensus 199 ~~r~~w~~y~~~~~-~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~ 277 (358)
.|++.-.. ....+ .|++|+|+.++. .++ ...+..+.. +.|+++|+||+||....
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~---------~s~---~~~L~~~~~-----~kpviLViNK~DLl~~~------- 112 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN---------GSW---IPGLHRFVG-----NNPVLLVGNKADLLPKS------- 112 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC---------Cch---hHHHHHHhC-----CCCEEEEEEchhhCCCc-------
Confidence 34443333 34444 889999986543 111 223333322 56899999999995321
Q ss_pred ccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 278 ~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
...++..+|+...+.... -....++.+||+++.|++++++.+.+.
T Consensus 113 ---------------~~~~~i~~~l~~~~k~~g---------~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 113 ---------------VKKNKVKNWLRQEAKELG---------LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ---------------cCHHHHHHHHHHHHHhcC---------CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 123344556554443210 011246789999999999999998654
No 328
>PRK12288 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.0052 Score=59.37 Aligned_cols=87 Identities=8% Similarity=0.098 Sum_probs=51.9
Q ss_pred cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccC
Q 018283 209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPV 288 (358)
Q Consensus 209 ~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~ 288 (358)
.|+|.+++|+++. .+.+...+..++. .+ . ..++|++||+||+||..+.
T Consensus 119 ANvD~vlIV~s~~-------p~~s~~~Ldr~L~---~a-~---~~~i~~VIVlNK~DL~~~~------------------ 166 (347)
T PRK12288 119 ANIDQIVIVSAVL-------PELSLNIIDRYLV---AC-E---TLGIEPLIVLNKIDLLDDE------------------ 166 (347)
T ss_pred EEccEEEEEEeCC-------CCCCHHHHHHHHH---HH-H---hcCCCEEEEEECccCCCcH------------------
Confidence 4689999999863 1122333333332 22 1 2368999999999995321
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 289 STGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 289 ~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
......+++ ..|.. ..+.++.+||+++++++++++.+..
T Consensus 167 -----~~~~~~~~~-~~y~~------------~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 167 -----GRAFVNEQL-DIYRN------------IGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred -----HHHHHHHHH-HHHHh------------CCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 001111111 12221 1256788999999999999998865
No 329
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0048 Score=57.90 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=72.2
Q ss_pred EEEEEecCCCchhhhhHhhhhcCC---cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 188 VYRLFDVGGQRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+.+.|..|++-.- ...+.++ |++|+|++-.+ ........+.+..++-+ . -..++++-||.
T Consensus 87 ~VSfVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANE-------pcPQPQT~EHl~AleIi-g-----ik~iiIvQNKI 150 (415)
T COG5257 87 RVSFVDAPGHETLM---ATMLSGAALMDGALLVIAANE-------PCPQPQTREHLMALEII-G-----IKNIIIVQNKI 150 (415)
T ss_pred EEEEeeCCchHHHH---HHHhcchhhhcceEEEEecCC-------CCCCCchHHHHHHHhhh-c-----cceEEEEeccc
Confidence 46789999998643 3345554 78999998642 23334445555544333 2 24689999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
||..+.-.. +.+++-.+|++...- ....+.=+||.-+.||+-+++.|.
T Consensus 151 DlV~~E~Al-------------------E~y~qIk~FvkGt~A-------------e~aPIIPiSA~~~~NIDal~e~i~ 198 (415)
T COG5257 151 DLVSRERAL-------------------ENYEQIKEFVKGTVA-------------ENAPIIPISAQHKANIDALIEAIE 198 (415)
T ss_pred ceecHHHHH-------------------HHHHHHHHHhccccc-------------CCCceeeehhhhccCHHHHHHHHH
Confidence 997542110 334555555544331 112345589999999999999999
Q ss_pred HHHH
Q 018283 345 ETLR 348 (358)
Q Consensus 345 ~~i~ 348 (358)
+.|-
T Consensus 199 ~~Ip 202 (415)
T COG5257 199 KYIP 202 (415)
T ss_pred HhCC
Confidence 8873
No 330
>PTZ00258 GTP-binding protein; Provisional
Probab=96.97 E-value=0.0033 Score=61.50 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
...+||.|+|.+++|||||++.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt 42 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC 42 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh
Confidence 567799999999999999999873
No 331
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.87 E-value=0.0021 Score=71.60 Aligned_cols=76 Identities=12% Similarity=0.283 Sum_probs=44.2
Q ss_pred EEEEecCCCc--------hhhhhHhhhhc---------CCcEEEEEEEccccccccccccccchHHH-HHHHHHHHHcCC
Q 018283 189 YRLFDVGGQR--------NERRKWIHLFE---------GVSAVIFCAAISEYDQTLFEDEQKNRMME-TKELFDWVLKQP 250 (358)
Q Consensus 189 l~i~D~~Gq~--------~~r~~w~~y~~---------~~~~iIfv~dls~~d~~~~~~~~~~~l~~-~~~~~~~i~~~~ 250 (358)
-.++||+|.. ..+..|..+.. -.++||+++|+++.-.. +......... ...-+.++.. .
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~--~~~~~~~~a~~lR~rl~el~~-~ 239 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTA--DPAERKAHARAIRQRLQELRE-Q 239 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCC--CHHHHHHHHHHHHHHHHHHHH-H
Confidence 3588999942 23556877653 48999999999754211 0111111111 1222233322 2
Q ss_pred CCCCCcEEEEeeCCCch
Q 018283 251 CFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~ 267 (358)
.....||.|+++|+|+.
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 23478999999999986
No 332
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0044 Score=62.01 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=22.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.-||.++|++|||||||++.+-..|.
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999998865554
No 333
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.82 E-value=0.032 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHhhccccEEEecCCCCChhHHHHHHH
Q 018283 42 KAEKHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 42 ~~~~~~~killlG~~~sGKSTi~kq~~ 68 (358)
+|....+-|.++|+-.+|||||+|++.
T Consensus 12 ~RT~G~IyIGvvGpvrtGKSTfIn~fm 38 (492)
T TIGR02836 12 ERTQGDIYIGVVGPVRTGKSTFIKKFM 38 (492)
T ss_pred HHhCCcEEEEEEcCCCCChHHHHHHHH
Confidence 455678999999999999999999974
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.75 E-value=0.0074 Score=55.35 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.0
Q ss_pred eEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 322 VFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 322 ~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
...+..|||+.+++|.++++.|.+.-
T Consensus 204 ~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 204 RPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999988753
No 335
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.72 E-value=0.011 Score=57.28 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.3
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
++|.|+|.+++|||||++.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt 23 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT 23 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999874
No 336
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.042 Score=51.16 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=51.1
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
|.-|.....+.+ +..+..+...|+.|+..|-+-...---..|+.|+|++.++ .......+.+-+-
T Consensus 59 rGITIntahvey------et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~d--------GpmPqTrEHiLla- 123 (394)
T COG0050 59 RGITINTAHVEY------ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD--------GPMPQTREHILLA- 123 (394)
T ss_pred cCceeccceeEE------ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCC--------CCCCcchhhhhhh-
Confidence 344444445555 5666778889999998875554444446789999998752 2223222222111
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchh
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
....-.-+++|+||+|+.+
T Consensus 124 -----rqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 124 -----RQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred -----hhcCCcEEEEEEecccccC
Confidence 1112236788999999975
No 337
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.001 Score=63.31 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=45.4
Q ss_pred cceEEEEEecCCCchhhhhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
..--+++.|.+|+.+|.+-..+-+. ..+++.+|++.. ..-.....+.+-+...+ ++|++++.+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~--------~Gi~~tTrEHLgl~~AL-------~iPfFvlvt 311 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSAD--------RGITWTTREHLGLIAAL-------NIPFFVLVT 311 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcC--------CCCccccHHHHHHHHHh-------CCCeEEEEE
Confidence 3345688999999999877766444 356777787641 11112233444433332 689999999
Q ss_pred CCCchhh
Q 018283 263 KFDIFEK 269 (358)
Q Consensus 263 K~Dl~~e 269 (358)
|+||...
T Consensus 312 K~Dl~~~ 318 (591)
T KOG1143|consen 312 KMDLVDR 318 (591)
T ss_pred eeccccc
Confidence 9999754
No 338
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=96.61 E-value=0.013 Score=54.81 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=24.0
Q ss_pred eEEEEEecCCCch----hhh---hHhhhhcCCcEEEEEEEcc
Q 018283 187 EVYRLFDVGGQRN----ERR---KWIHLFEGVSAVIFCAAIS 221 (358)
Q Consensus 187 ~~l~i~D~~Gq~~----~r~---~w~~y~~~~~~iIfv~dls 221 (358)
..+.+.|++|-.. -.. ......+.+|++++|+|.+
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3589999999532 122 2333456899999999975
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.59 E-value=0.0069 Score=52.30 Aligned_cols=90 Identities=23% Similarity=0.188 Sum_probs=52.9
Q ss_pred hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccc
Q 018283 202 RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEW 281 (358)
Q Consensus 202 ~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~ 281 (358)
..-.....++|.+++|+|.++.. ...+ ...... ..+.|+++++||+|+..+.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~------~~~~-----~~i~~~------~~~k~~ilVlNK~Dl~~~~----------- 62 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPL------SSRN-----PLLEKI------LGNKPRIIVLNKADLADPK----------- 62 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCcc------CcCC-----hhhHhH------hcCCCEEEEEehhhcCChH-----------
Confidence 33445678999999999985311 0111 111111 1246899999999985221
Q ss_pred ccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 282 FKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 282 f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
...+..++ +.. ....++.+||+++.+++++.+.+.+.+
T Consensus 63 ------------~~~~~~~~----~~~------------~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 63 ------------KTKKWLKY----FES------------KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ------------HHHHHHHH----HHh------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 01111111 111 012356789999999999998887765
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.49 E-value=0.011 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...+++++|.+++||||+++++.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999999874
No 341
>PRK08118 topology modulation protein; Reviewed
Probab=96.46 E-value=0.0024 Score=55.14 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
||+|+|++||||||+.+++...+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999985433
No 342
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.45 E-value=0.0026 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
+|+|.|++||||||+++++.-.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998643
No 343
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.41 E-value=0.0093 Score=49.74 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=29.7
Q ss_pred hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 207 y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
..+++|.+++|+|..+ .....-.+..+++... ..++|+++++||+|+..
T Consensus 8 ~i~~aD~vl~ViD~~~--------p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 8 VVERSDIVVQIVDARN--------PLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLT 56 (141)
T ss_pred HHhhCCEEEEEEEccC--------CcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCC
Confidence 4578999999999742 1111111222222221 14689999999999853
No 344
>PRK07261 topology modulation protein; Provisional
Probab=96.39 E-value=0.0029 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=19.9
Q ss_pred ccEEEecCCCCChhHHHHHHHHh
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l 70 (358)
.||+++|++||||||+.+++...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998533
No 345
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0024 Score=55.76 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
+||+++|++||||||+.+++.
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 346
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.014 Score=56.85 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=43.2
Q ss_pred cceEEEEEecCCCchhhhhH---hhhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC-cE
Q 018283 185 SGEVYRLFDVGGQRNERRKW---IHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT-SF 257 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w---~~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~i 257 (358)
.+..+.++||+|........ ...+.. ..-.++|++.+ ...+.+.+....|......|...-. +-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAt---------s~~~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAT---------SHGDTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCc---------cChHHHHHHHHHHHHhhcccccccCCCC
Confidence 34577889999976443322 222322 33457888863 4556667777778776543322111 22
Q ss_pred EEEeeCCCch
Q 018283 258 MLFLNKFDIF 267 (358)
Q Consensus 258 ilv~NK~Dl~ 267 (358)
=++++|.|-.
T Consensus 285 ~~I~TKlDEt 294 (374)
T PRK14722 285 GCILTKLDEA 294 (374)
T ss_pred EEEEeccccC
Confidence 4677999964
No 347
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.33 E-value=0.036 Score=48.21 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.8
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
+++-|.-||||||+++++-
T Consensus 3 ~ii~GfLGsGKTTli~~ll 21 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLL 21 (178)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999974
No 348
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.31 E-value=0.036 Score=46.94 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.8
Q ss_pred EEEEeeccChhhHHHHHHHHHHHH
Q 018283 324 KIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 324 ~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
.++.+||+++.+++.+.+.+.+..
T Consensus 61 ~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 61 IPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred eEEEEeccCCcChhhHHHHHHHHh
Confidence 456799999999999999887654
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.017 Score=56.50 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.0
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..+|+|+|++||||||++..+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3578999999999999988773
No 350
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.05 E-value=0.0059 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.9
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.-.+++.|++|||||||+|++..+-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccC
Confidence 33689999999999999999976654
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.04 E-value=0.063 Score=50.12 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=38.2
Q ss_pred cceEEEEEecCCCchhhhhHh-------hhh-----cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWI-------HLF-----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~-------~y~-----~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
.+..+.+.||+|.......+. ... ..++.+++|+|.+ ...+.+..+ ..|...++
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---------~~~~~~~~~-~~f~~~~~---- 218 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---------TGQNALEQA-KVFNEAVG---- 218 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---------CCHHHHHHH-HHHHhhCC----
Confidence 456789999999864322221 111 1378899999973 333444433 22322211
Q ss_pred CCCcEEEEeeCCCch
Q 018283 253 EKTSFMLFLNKFDIF 267 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~ 267 (358)
+--+++||.|..
T Consensus 219 ---~~g~IlTKlDe~ 230 (272)
T TIGR00064 219 ---LTGIILTKLDGT 230 (272)
T ss_pred ---CCEEEEEccCCC
Confidence 346889999963
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.00 E-value=0.056 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.1
Q ss_pred cccEEEecCCCCChhHHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~ 69 (358)
..-++++|++||||||++..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34678999999999999988743
No 353
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.99 E-value=0.052 Score=48.13 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=37.1
Q ss_pred ccceEEEEEecCCCchhh----hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283 184 KSGEVYRLFDVGGQRNER----RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 257 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r----~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i 257 (358)
.++..+.+.||+|..... ..+..+.+ ..+-+++|+|.+ ...+.+..... |...++ +=
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~---------~~~~~~~~~~~-~~~~~~-------~~ 143 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSAT---------MGQEDLEQALA-FYEAFG-------ID 143 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGG---------GGGHHHHHHHH-HHHHSS-------TC
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecc---------cChHHHHHHHH-Hhhccc-------Cc
Confidence 345778999999975432 22333332 567788999874 33344443333 333221 11
Q ss_pred EEEeeCCCch
Q 018283 258 MLFLNKFDIF 267 (358)
Q Consensus 258 ilv~NK~Dl~ 267 (358)
-++++|.|-.
T Consensus 144 ~lIlTKlDet 153 (196)
T PF00448_consen 144 GLILTKLDET 153 (196)
T ss_dssp EEEEESTTSS
T ss_pred eEEEEeecCC
Confidence 4668999963
No 354
>PRK06217 hypothetical protein; Validated
Probab=95.98 E-value=0.0059 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+|+|+|.+||||||+.+++...+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999986443
No 355
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.95 E-value=0.044 Score=55.35 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=32.8
Q ss_pred cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 209 ~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
..||.+.++||+| +.+++......++.-. .....|+++++.|.|+.+.
T Consensus 494 ~~cDv~~~~YDsS----------~p~sf~~~a~v~~~~~---~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 494 AACDVACLVYDSS----------NPRSFEYLAEVYNKYF---DLYKIPCLMVATKADLDEV 541 (625)
T ss_pred ceeeeEEEecccC----------CchHHHHHHHHHHHhh---hccCCceEEEeeccccchh
Confidence 5789999999985 3344444444443322 2257899999999999754
No 356
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0051 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.8
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.++++|++|||||||++-+..|-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3378999999999999999886544
No 357
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.92 E-value=0.0059 Score=50.56 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.6
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|+|.|++||||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999985
No 358
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=95.91 E-value=0.096 Score=50.24 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.6
Q ss_pred hccccEEEecCCCCChhHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~ 67 (358)
.-.+.|+++|++|+|||||++.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL 43 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTL 43 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhh
Confidence 45678999999999999999987
No 359
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.90 E-value=0.0096 Score=42.46 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.++.|+.|||||||+..+..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999986444
No 360
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.75 E-value=0.12 Score=44.39 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=16.9
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-+++.|.+|+||||+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999987763
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=95.73 E-value=0.049 Score=50.94 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=53.9
Q ss_pred hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccc
Q 018283 203 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWF 282 (358)
Q Consensus 203 ~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f 282 (358)
.-....+++|.+|+|+|..+-. ...+ ..+...+ .+.|+++|+||+|+..+.
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~------~~~~------~~i~~~l-----~~kp~IiVlNK~DL~~~~------------ 64 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPL------SSRN------PMIDEIR-----GNKPRLIVLNKADLADPA------------ 64 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCC------CCCC------hhHHHHH-----CCCCEEEEEEccccCCHH------------
Confidence 3345678999999999974210 1111 1122222 257999999999984321
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 283 KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 283 ~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
......+++ ... ...++.+||+++.+++.+.+.+.+.+-.
T Consensus 65 -----------~~~~~~~~~----~~~------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 65 -----------VTKQWLKYF----EEK------------GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred -----------HHHHHHHHH----HHc------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 011112221 110 1235678999999999998888776643
No 362
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.61 E-value=0.0083 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.++|+|++||||||+++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999985443
No 363
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.61 E-value=0.011 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHhcCC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~~ 73 (358)
|+|+|++||||||+++++...+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 688999999999999998655433
No 364
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.59 E-value=0.058 Score=50.65 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=17.2
Q ss_pred cEEEecCCCCChhHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~ 67 (358)
-.+++|.+|+|||||++.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L 184 (301)
T COG1162 166 ITVLLGQSGVGKSTLINAL 184 (301)
T ss_pred eEEEECCCCCcHHHHHHhh
Confidence 4678899999999999987
No 365
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.0088 Score=57.81 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=61.7
Q ss_pred eeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH
Q 018283 164 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243 (358)
Q Consensus 164 ~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~ 243 (358)
-|+-|++-..+.| +.++.++++.||.|+-.||---..|.+--|+++-|+|-|. ..+ ...+..|
T Consensus 85 ergitiqsaav~f------dwkg~rinlidtpghvdf~leverclrvldgavav~dasa---------gve--~qtltvw 147 (753)
T KOG0464|consen 85 ERGITIQSAAVNF------DWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA---------GVE--AQTLTVW 147 (753)
T ss_pred hcCceeeeeeeec------ccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC---------Ccc--cceeeee
Confidence 3455555556778 8999999999999999999999999999999999999752 111 1223344
Q ss_pred HHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 244 DWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 244 ~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
++.-. -+.|-+.|.||+|...
T Consensus 148 rqadk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 148 RQADK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred hhccc----cCCchhhhhhhhhhhh
Confidence 43322 2678889999999754
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.53 E-value=0.098 Score=51.88 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=38.3
Q ss_pred cceEEEEEecCCCchhhhhHhh----hh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283 185 SGEVYRLFDVGGQRNERRKWIH----LF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 258 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~----y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii 258 (358)
.++.+.|.||+|.......+.. +. .+.+-+++|+|.+ ...+. .+..+.|...+ .+--
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~---------~Gq~a-~~~a~~F~~~~-------~~~g 243 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS---------IGQAA-EAQAKAFKDSV-------DVGS 243 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc---------cChhH-HHHHHHHHhcc-------CCcE
Confidence 3578899999997654333322 21 2467789999853 12222 22334444321 2446
Q ss_pred EEeeCCCch
Q 018283 259 LFLNKFDIF 267 (358)
Q Consensus 259 lv~NK~Dl~ 267 (358)
+++||.|-.
T Consensus 244 ~IlTKlD~~ 252 (429)
T TIGR01425 244 VIITKLDGH 252 (429)
T ss_pred EEEECccCC
Confidence 789999964
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.52 E-value=0.019 Score=64.08 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=90.3
Q ss_pred hccccEEEecCCCCChhHHHHHHH----HhcC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK----LLFQ-------TGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSM 113 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~----~l~~-------~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~ 113 (358)
++...+.++|+-|||||||+..+- .+.+ -.|-+++.+.+..+|+.|++
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNIL--------------------- 603 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENIL--------------------- 603 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhh---------------------
Confidence 456689999999999999998762 1111 12677888888888888886
Q ss_pred ccccCcchHHHHHHH-hhccCCCCCccCcHHHHHHHHHhhcCCCCCcceeeeeeccCceeeEeeccCCCCcccceEEEEE
Q 018283 114 KFVVSSENKEIGEKL-SEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLF 192 (358)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~ 192 (358)
+.+|-+++..+.+ ..|.-..|.. +| |--.. +.+ ..+++++
T Consensus 604 --FG~~~d~~rY~~Vi~aC~L~~Dle----------------------~L----p~GD~--TeI------GErGinL--- 644 (1381)
T KOG0054|consen 604 --FGSPYDEERYDKVIKACALKKDLE----------------------IL----PFGDL--TEI------GERGINL--- 644 (1381)
T ss_pred --cCccccHHHHHHHHHHccCHhHHh----------------------hc----CCCCc--cee------cCCccCC---
Confidence 2234344333322 2222211100 00 00000 111 3455655
Q ss_pred ecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 193 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 193 D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
.|||+.--.+-+.-|+++|..++ | |.=+.-.-+-...+|++.+ ...+.++.+|||-|....+.
T Consensus 645 -SGGQKqRIsLARAVY~~adIYLL--D---------DplSAVDahvg~~if~~ci-~~~L~~KT~ILVTHql~~L~ 707 (1381)
T KOG0054|consen 645 -SGGQKQRISLARAVYQDADIYLL--D---------DPLSAVDAHVGKHIFEECI-RGLLRGKTVILVTHQLQFLP 707 (1381)
T ss_pred -cHhHHHHHHHHHHHhccCCEEEE--c---------CcchhhhHhhhHHHHHHHH-HhhhcCCEEEEEeCchhhhh
Confidence 69999888889999999997554 3 1111122344567788877 44566788888888766543
No 368
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.012 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
=|.+||++||||||+++-+.-+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999998865543
No 369
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.16 Score=50.18 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=17.9
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++++|++||||||++.++.
T Consensus 225 vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999998884
No 370
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.39 E-value=0.014 Score=50.55 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.0
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|++||||||+++++...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998543
No 371
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.38 E-value=0.039 Score=53.13 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred ceEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccc
Q 018283 186 GEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 186 ~~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~ 222 (358)
...+.+.|++|-- ..-.+...-.|.+|+|+-||+.++
T Consensus 66 ~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 66 PAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 4578999998763 234455666789999999999874
No 372
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=95.35 E-value=0.1 Score=50.71 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=26.6
Q ss_pred eEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccc
Q 018283 187 EVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 187 ~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~ 222 (358)
..+.+.|++|-.. .........+++|+++.|++..+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4568889988643 23355667889999999999854
No 373
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.013 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
..++|++|||||||++-+..+..
T Consensus 36 TAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhcc
Confidence 57899999999999998865553
No 374
>PRK03839 putative kinase; Provisional
Probab=95.30 E-value=0.015 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
+|+|+|.+||||||+.+++...+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986444
No 375
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.26 E-value=0.013 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
=++|||++||||||+++-+..|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999876664
No 376
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.22 E-value=0.016 Score=46.67 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=17.5
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|+|.|.+||||||+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 6899999999999999985
No 377
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.21 E-value=0.012 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=17.0
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
||+|.|+.++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998633
No 378
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.21 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.5
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.-.|+|+|++|+||||++..+-
T Consensus 350 G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999987763
No 379
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.16 E-value=0.016 Score=46.14 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.2
Q ss_pred cEEEecCCCCChhHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~ 67 (358)
.++++|++||||||+++.+
T Consensus 17 ~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 17 GVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEcCCCCCHHHHHHHh
Confidence 5899999999999999875
No 380
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.16 E-value=0.11 Score=43.13 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=42.4
Q ss_pred eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
..+.++|+++.- .......+..+|.+++|++. +..++......++.+.... ...++.++.|+.+-
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~-----------~~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTP-----------EPTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCC-----------ChhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 567999998753 23344678899999999974 3444444444444443321 34578899999874
No 381
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.13 E-value=0.02 Score=41.62 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.4
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|.+.|.+||||||+.+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999985
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=95.10 E-value=0.13 Score=49.91 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=27.7
Q ss_pred hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 208 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 208 ~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
..|+|.+++|+++. .+-+...++..+... . ..+++.+||+||+||..
T Consensus 110 aANvD~vliV~s~~-------p~~~~~~ldr~L~~a----~---~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLN-------HDFNLRRIERYLALA----W---ESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecC-------CCCChhHHHHHHHHH----H---HcCCCEEEEEEChhcCC
Confidence 46899999999972 011112222222221 1 13567789999999953
No 383
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.05 E-value=0.018 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-|.++|++|||||||++-+-.+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999875443
No 384
>PLN03232 ABC transporter C family member; Provisional
Probab=95.05 E-value=0.018 Score=65.96 Aligned_cols=46 Identities=9% Similarity=0.165 Sum_probs=31.9
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcCC------------CCCHHHHHHHHHHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQT------------GFDEAELKSYISVIHANVY 92 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~~------------~f~~~e~~~~~~~I~~n~~ 92 (358)
.-+++++|++|||||||++-+-..+.+ +|-+++...+..+|+.|+.
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~ 700 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENIL 700 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhh
Confidence 347899999999999999988655532 1334455555566666664
No 385
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.04 E-value=0.8 Score=46.27 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=38.0
Q ss_pred hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 199 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 199 ~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
..-++..+|..+.++||+|+-= .+ ...-......++......+..-|+|++|.||.++
T Consensus 437 ~I~~msKayM~NPNAIILCIQD----------GS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 437 TIFSISKAYMQNPNAIILCIQD----------GS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred HHHHHHHHHhcCCCeEEEEecc----------CC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 4567788999999999999831 11 1111222334444434446778999999999876
No 386
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.04 E-value=0.018 Score=52.67 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
=++++|++||||||++|.+..+..
T Consensus 29 f~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 367889999999999998865554
No 387
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.03 E-value=0.018 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.|||++||||||+++.+.-+..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 66999999999999998865554
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.01 E-value=0.034 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.5
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
--++++|++|+|||||++.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999874
No 389
>COG4639 Predicted kinase [General function prediction only]
Probab=94.98 E-value=0.056 Score=45.79 Aligned_cols=17 Identities=53% Similarity=0.673 Sum_probs=15.9
Q ss_pred EEEecCCCCChhHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQ 66 (358)
Q Consensus 50 illlG~~~sGKSTi~kq 66 (358)
|+|+|+++|||||++++
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 67889999999999998
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.96 E-value=0.02 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
-.++|+|+.|||||||++.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEEccCCCccccceeeec
Confidence 478999999999999999874
No 391
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.95 E-value=0.35 Score=45.13 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.3
Q ss_pred ccEEEecCCCCChhHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~ 67 (358)
-+++++|++|+||||++..+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 58999999999999998876
No 392
>PRK14530 adenylate kinase; Provisional
Probab=94.94 E-value=0.022 Score=51.13 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.3
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+|+|+|++||||||+.+.+...++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999865554
No 393
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.94 E-value=0.022 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.4
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
..+||+|+|++||||||+.+++...|+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999865443
No 394
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.94 E-value=0.37 Score=36.18 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.2
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
+++.|.+|+||||+...+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~ 20 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLA 20 (99)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5788999999999988763
No 395
>PRK13949 shikimate kinase; Provisional
Probab=94.91 E-value=0.025 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+|+|+|..||||||+.+.+...++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999865444
No 396
>PRK14532 adenylate kinase; Provisional
Probab=94.90 E-value=0.024 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
+|+|+|++||||||+.+++..-+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999985444
No 397
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.84 E-value=0.027 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.1
Q ss_pred EEEecCCCCChhHHHHHHHHhc
Q 018283 50 LLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~ 71 (358)
|.|.|++||||||+++.+..++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999986554
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.82 E-value=0.22 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.4
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-|+++|..||||||++..+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4568899999999999987763
No 399
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.82 E-value=0.021 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.6
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
.|+|+|++||||||+++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998853
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.32 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.0
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.--++++|+.||||||++..+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3357899999999999988763
No 401
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.77 E-value=0.023 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.2
Q ss_pred cccEEEecCCCCChhHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~ 67 (358)
.-.+.|+|++|||||||++.+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 347899999999999999865
No 402
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.75 E-value=0.024 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.8
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
--|+++|++||||||+++-+.-+.
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCc
Confidence 368899999999999999875433
No 403
>PRK14974 cell division protein FtsY; Provisional
Probab=94.74 E-value=0.29 Score=47.08 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=18.3
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-|+++|..|+||||++..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4578899999999999877663
No 404
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.72 E-value=0.028 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+|+|+|++||||||+.+++...++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999865443
No 405
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.026 Score=51.09 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=39.3
Q ss_pred cCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 194 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 194 ~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
.|||..-=..-+...+++..++-==.++ +-+...-...++.++.+... .+..+++-+.-.|+..+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPva--------sLDp~~a~~Vm~~l~~in~~---~g~Tvi~nLH~vdlA~~ 213 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVA--------SLDPESAKKVMDILKDINQE---DGITVIVNLHQVDLAKK 213 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCccc--------ccChhhHHHHHHHHHHHHHH---cCCEEEEEechHHHHHH
Confidence 4777665555666677777655311111 12344556677788887654 35778888888887543
No 406
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.69 E-value=0.061 Score=48.75 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHH
Q 018283 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 32 ~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~ 69 (358)
.+-..|..-.....+..-+.|.|++|||||||++.+..
T Consensus 18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33344444333334566788999999999999998753
No 407
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.69 E-value=0.027 Score=45.60 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.4
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|||.|++|+||||+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999999999874
No 408
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.67 E-value=0.024 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.5
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
.|+++|++||||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998853
No 409
>PRK02496 adk adenylate kinase; Provisional
Probab=94.67 E-value=0.028 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
++++++|++||||||+.+.+...+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999986444
No 410
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.67 E-value=0.079 Score=49.82 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=53.5
Q ss_pred HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccc
Q 018283 204 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFK 283 (358)
Q Consensus 204 w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~ 283 (358)
-......+|.+|+|+|..+.. ...+ ..+...+. +.|+++|+||+||....
T Consensus 18 l~~~l~~aDvIL~VvDar~p~------~~~~------~~l~~~~~-----~kp~iiVlNK~DL~~~~------------- 67 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPL------SSEN------PMIDKIIG-----NKPRLLILNKSDLADPE------------- 67 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCC------CCCC------hhHHHHhC-----CCCEEEEEEchhcCCHH-------------
Confidence 344578999999999974210 1111 12223322 57999999999984221
Q ss_pred ccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 284 DYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 284 ~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
......+|+ .+. ...++.+||+++.+++.+.+.+.+.+-.
T Consensus 68 ----------~~~~~~~~~----~~~------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 68 ----------VTKKWIEYF----EEQ------------GIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ----------HHHHHHHHH----HHc------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 011222222 110 1235678999999999998888776643
No 411
>PLN03130 ABC transporter C family member; Provisional
Probab=94.66 E-value=0.029 Score=64.63 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=32.0
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcCC------------CCCHHHHHHHHHHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQT------------GFDEAELKSYISVIHANVY 92 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~~------------~f~~~e~~~~~~~I~~n~~ 92 (358)
+.-+++++|++|||||||++-+-..+.+ +|-+++...+..+|+.|+.
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~ 700 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNIL 700 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHh
Confidence 3347899999999999999988655532 1334455555556666664
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.18 Score=53.40 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.4
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++++|+.||||||.+..+-
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47899999999999988774
No 413
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.63 E-value=0.03 Score=50.03 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
||+|+|++||||||+.+++.--|
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999985444
No 414
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.61 E-value=0.026 Score=48.12 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEEecCCCCChhHHHHHHHHh
Q 018283 50 LLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l 70 (358)
|+|+|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998643
No 415
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.61 E-value=0.029 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=20.4
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..-|.+.|++||||||+++.+..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999986443
No 416
>PRK14531 adenylate kinase; Provisional
Probab=94.60 E-value=0.033 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+|+++|++||||||+.+++..-+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999985444
No 417
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=0.1 Score=57.51 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=42.3
Q ss_pred EEEecCCCc--------hhhhhHhhh------h---cCCcEEEEEEEccccccccccccccchHHHH--HHH-HHHHHcC
Q 018283 190 RLFDVGGQR--------NERRKWIHL------F---EGVSAVIFCAAISEYDQTLFEDEQKNRMMET--KEL-FDWVLKQ 249 (358)
Q Consensus 190 ~i~D~~Gq~--------~~r~~w~~y------~---~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~--~~~-~~~i~~~ 249 (358)
.+.||+|.. .-++-|.++ + +-.++||..+|+++--. .....+...+ +.. +.++..
T Consensus 177 VlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~----~~~~~~~~~~~~LR~RL~El~~- 251 (1188)
T COG3523 177 VLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLT----ADPAEREALARTLRARLQELRE- 251 (1188)
T ss_pred EEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcC----CCHHHHHHHHHHHHHHHHHHHH-
Confidence 456777753 335678754 2 36799999999975321 1112221112 221 333322
Q ss_pred CCCCCCcEEEEeeCCCchh
Q 018283 250 PCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 250 ~~~~~~~iilv~NK~Dl~~ 268 (358)
...-..|++|++||.|+..
T Consensus 252 tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 252 TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hhccCCceEEEEecccccc
Confidence 1223679999999999853
No 418
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.59 E-value=0.031 Score=49.44 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=21.1
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...-|+|+|++||||||+++.+...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34468999999999999999986443
No 419
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.58 E-value=0.031 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEecCCCCChhHHHHHHHHhc
Q 018283 50 LLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~ 71 (358)
|+++|++||||||+.+++..-+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999985444
No 420
>PRK08233 hypothetical protein; Provisional
Probab=94.56 E-value=0.027 Score=48.63 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=18.0
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-|.+.|.+||||||+.+++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346678999999999999985
No 421
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.55 E-value=0.036 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-|+|.|.+||||||+.+.+....
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37888999999999999986444
No 422
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.53 E-value=0.029 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
..++|+|++|+||||+++.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALA 23 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999875
No 423
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.52 E-value=0.028 Score=51.78 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=19.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
=+.++|+.|||||||+|-+..+..
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 367899999999999999865443
No 424
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.43 E-value=0.036 Score=49.73 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
++|+|+|++||||||+.+.+..-+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999885444
No 425
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.42 E-value=0.029 Score=50.05 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=18.8
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-|+|+|++||||||+++++.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4457788999999999999885
No 426
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.42 E-value=0.034 Score=49.52 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=21.6
Q ss_pred hccccEEEecCCCCChhHHHHHHHHh
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l 70 (358)
++...|.|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999988543
No 427
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.41 E-value=0.031 Score=46.84 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEEecCCCCChhHHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~ 69 (358)
+++.|.+||||||+.+++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 67899999999999999853
No 428
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.33 E-value=0.039 Score=52.94 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCCCCCH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~~f~~ 77 (358)
-+|+++|++|+|||||++.+...++..+-+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 389999999999999999998777766533
No 429
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.26 E-value=0.041 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhcCC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-|-++|.+|||||||++-+..+-.+
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P 58 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCC
Confidence 4779999999999999998766553
No 430
>PRK10867 signal recognition particle protein; Provisional
Probab=94.26 E-value=0.47 Score=47.29 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.0
Q ss_pred cccEEEecCCCCChhHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~ 67 (358)
..-|+++|..||||||++-.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHH
Confidence 346889999999999976555
No 431
>PF13173 AAA_14: AAA domain
Probab=94.26 E-value=0.036 Score=45.34 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=17.1
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
++|.|+.+|||||+++|+.
T Consensus 5 ~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999974
No 432
>PRK13695 putative NTPase; Provisional
Probab=94.25 E-value=0.036 Score=47.89 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.4
Q ss_pred ccEEEecCCCCChhHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~ 67 (358)
+||+|.|++|+||||+++.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999875
No 433
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.4 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.1
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-|+++|+.|+||||.+..+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999988774
No 434
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.18 E-value=0.61 Score=44.27 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.0
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-|.++|=.+||||||+|++.
T Consensus 180 viavVGYTNaGKsTLikaLT 199 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALT 199 (410)
T ss_pred eEEEEeecCccHHHHHHHHH
Confidence 47899999999999999984
No 435
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.18 E-value=0.036 Score=48.68 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=17.4
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|+|+|++|||||||.+++.
T Consensus 7 ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7788999999999999985
No 436
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.04 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.4
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.. .+.|+|++|||||||++-+..++
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 88999999999999999887554
No 437
>PRK00625 shikimate kinase; Provisional
Probab=94.16 E-value=0.048 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.|+|+|.+||||||+.+++...+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999985433
No 438
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.14 E-value=0.08 Score=42.89 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.3
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-+++.|++|+|||++++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999874
No 439
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.14 E-value=0.038 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
....|+++|.+++||||+++.+.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHh
Confidence 45688899999999999999984
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.14 E-value=0.037 Score=49.20 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.8
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++|+||||++|++.
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 46889999999999999974
No 441
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.12 E-value=0.038 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.5
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478899999999999999875443
No 442
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.11 E-value=0.041 Score=45.47 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=17.8
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|+|+|++|+|||++++++.
T Consensus 2 vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEESSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999999985
No 443
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.10 E-value=0.039 Score=49.35 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=21.6
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.-.+.|+|++|||||||++-+..+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999998865553
No 444
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.10 E-value=0.039 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..+.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999886554
No 445
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.81 Score=43.71 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=51.1
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
|.-|.....+.+ ......+--.|++|+..|-+-...=-..-|++|+||+-+| .......+.+-+-+
T Consensus 101 RGITIn~aHveY------eTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatD--------G~MPQTrEHlLLAr 166 (449)
T KOG0460|consen 101 RGITINAAHVEY------ETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATD--------GPMPQTREHLLLAR 166 (449)
T ss_pred ccceEeeeeeee------eccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCC--------CCCcchHHHHHHHH
Confidence 444444444555 4444556677999998775444333344689999998752 33344444444444
Q ss_pred HHHcCCCCCCCcEEEEeeCCCch
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIF 267 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~ 267 (358)
++ .-..|++|.||.|+.
T Consensus 167 QV------GV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 167 QV------GVKHIVVFINKVDLV 183 (449)
T ss_pred Hc------CCceEEEEEeccccc
Confidence 43 124789999999997
No 446
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.05 E-value=0.054 Score=54.11 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.5
Q ss_pred ccccEEEecCCCCChhHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFK 65 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~k 65 (358)
..--++|+|++|||||||++
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh
Confidence 34468899999999999999
No 447
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.04 E-value=0.036 Score=58.47 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.5
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
..-+|.++|.+||||||++|-+..+|.+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4458999999999999999999888865
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.02 E-value=0.042 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999886554
No 449
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.00 E-value=0.043 Score=48.92 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.0
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..++
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3368899999999999999886554
No 450
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.98 E-value=0.036 Score=57.10 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.2
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.-+++++|++|||||||++-+-.++.
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 445889999999999999999877765
No 451
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.98 E-value=0.034 Score=58.83 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=23.7
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
+.-++.++|++|||||||+|-+..+|.+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999777753
No 452
>PRK06762 hypothetical protein; Provisional
Probab=93.98 E-value=0.053 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-|++.|.+||||||+.+++..-+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999986444
No 453
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.97 E-value=0.043 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
+.-+++++|++||||||+++-+..++.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4458999999999999999998766654
No 454
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.97 E-value=0.043 Score=48.04 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=19.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||++-+..++
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999876544
No 455
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.97 E-value=0.053 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+|+++|..||||||+.+.+....+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 3799999999999999999854433
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.95 E-value=0.045 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEecCCCCChhHHHHHHHHhc
Q 018283 50 LLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~ 71 (358)
|.+.|++||||||+++.+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 5688999999999999986443
No 457
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.93 E-value=0.026 Score=59.86 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.0
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
+.-+++++|++||||||+++-+..++.+
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 4457999999999999999999877754
No 458
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.92 E-value=0.044 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.++|+|++|||||||++-+..++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999886554
No 459
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.91 E-value=0.046 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.1
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
-+++++|.+++||||+++++.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 389999999999999999874
No 460
>PRK14529 adenylate kinase; Provisional
Probab=93.91 E-value=0.052 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.0
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
++|+|+|++||||||+.+++..-++
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3799999999999999998864443
No 461
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.90 E-value=0.074 Score=50.08 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=21.3
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
+..+=|.+.|++||||||+++.+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445667799999999999998875433
No 462
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.89 E-value=0.046 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.9
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..+.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999886554
No 463
>PRK14528 adenylate kinase; Provisional
Probab=93.89 E-value=0.053 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
+|+++|++||||||+.+++..-+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999985444
No 464
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.88 E-value=0.043 Score=50.09 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.6
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
.-.++++|++||||||+++.+..+..+
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 347899999999999999999766644
No 465
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.87 E-value=0.045 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++||||||++|-+..+.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999886554
No 466
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.86 E-value=0.059 Score=45.96 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.2
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
...|+|+|.+||||||+.+.+...++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 44789999999999999998854443
No 467
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=93.85 E-value=0.44 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.4
Q ss_pred ccccEEEecCCCCChhHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~ 67 (358)
+...++++|.+++|||+|++-+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~ 156 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDL 156 (320)
T ss_pred CCceeeeecCCcccHHHHHhhh
Confidence 4578999999999999999865
No 468
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=0.22 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.3
Q ss_pred cccEEEecCCCCChhHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~ 67 (358)
.+.++++|++|.|||||++.|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsL 41 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSL 41 (366)
T ss_pred ceEEEEecCCCccHHHHHHHH
Confidence 578999999999999999986
No 469
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.048 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||++-+..++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999886554
No 470
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.80 E-value=0.049 Score=48.45 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++|||||||++-+..+.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999886544
No 471
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.79 E-value=0.045 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++|||||||++-+..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999886544
No 472
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.79 E-value=0.056 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
=|+|+|++||||+|+.+++..-+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999985433
No 473
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.049 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.7
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.-.+.|+|++|||||||++-+..++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34788999999999999999866553
No 474
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.78 E-value=0.42 Score=46.73 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.6
Q ss_pred cccEEEecCCCCChhHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~ 67 (358)
.--|+|+|+.|+||||.+=.|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHH
Confidence 335789999999999876555
No 475
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.77 E-value=0.62 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.8
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-++++|..||||||++-.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 3458899999999999976653
No 476
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.76 E-value=0.05 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||++-+..++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999998865553
No 477
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.049 Score=49.42 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.7
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++|||||||++-+..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999886554
No 478
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.75 E-value=0.05 Score=48.42 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=21.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..++
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3378999999999999999886554
No 479
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.05 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++|||||||++-+..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999886544
No 480
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.75 E-value=0.061 Score=45.98 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.++|+|++|+||||+++-+.++-.
T Consensus 30 tlvllgpsgagkssllr~lnlle~ 53 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhC
Confidence 689999999999999999877654
No 481
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.75 E-value=0.052 Score=48.09 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.2
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-.+.|+|++|||||||++-+..++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999998875553
No 482
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.75 E-value=0.059 Score=46.96 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.7
Q ss_pred EEEecCCCCChhHHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~ 69 (358)
|+|+|++|||||||.+.+..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998753
No 483
>PLN02674 adenylate kinase
Probab=93.74 E-value=0.11 Score=47.68 Aligned_cols=29 Identities=34% Similarity=0.365 Sum_probs=23.9
Q ss_pred hhccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 44 EKHIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 44 ~~~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+...+|+|+|++||||+|+.+.+..-|+
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 44567899999999999999999865443
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.74 E-value=0.049 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.1
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
-++.++|++||||||+++-+.-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3789999999999999987753
No 485
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.74 E-value=0.061 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
|.|-|++|||||||.+++....+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999864443
No 486
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.05 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.2
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999986554
No 487
>PRK14526 adenylate kinase; Provisional
Probab=93.71 E-value=0.06 Score=48.30 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=20.2
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
++|+|+|++||||||+.+.+...+
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999885433
No 488
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.71 E-value=0.051 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999886554
No 489
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.69 E-value=0.053 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.378 Sum_probs=20.8
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.++|+|++|||||||++-+..++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368899999999999999886554
No 490
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.69 E-value=0.05 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=20.7
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3378999999999999999876544
No 491
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.053 Score=48.67 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++|||||||++-+..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999886554
No 492
>PRK13947 shikimate kinase; Provisional
Probab=93.68 E-value=0.062 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+|+|+|.+||||||+.+.+....+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999854443
No 493
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.68 E-value=0.053 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.0
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-.+.|+|++|||||||++-+..++
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368899999999999999886554
No 494
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.67 E-value=0.074 Score=45.96 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.3
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCCCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQTGF 75 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~~f 75 (358)
.+|+|+|..||||||+-+++..-.+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4799999999999999999965555555
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.056 Score=46.89 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=20.0
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++|||||||+|-+..++
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999886443
No 496
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.068 Score=51.88 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=31.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcCC----------CCCHHHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQT----------GFDEAELKSYISV 86 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~~----------~f~~~e~~~~~~~ 86 (358)
=|.++|..||||||+++-+..+|.| ..+++.++.||..
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence 3778999999999999999888863 3677788889865
No 497
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.04 Score=53.33 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=38.9
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEc
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAI 220 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dl 220 (358)
+.+|+++-...| ....-.|++.|..|+..|-.-...=-..||..++|++.
T Consensus 141 kgKtvEvGrA~F------Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisa 190 (501)
T KOG0459|consen 141 KGKTVEVGRAYF------ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISA 190 (501)
T ss_pred ccceeeeeeEEE------EecceeEEeeccCcccccchhhccccchhhhhhhhhhh
Confidence 457777777777 66778899999999999876666556677877888764
No 498
>PF05729 NACHT: NACHT domain
Probab=93.63 E-value=0.053 Score=45.62 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=34.1
Q ss_pred hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 203 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 203 ~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
.|........-+++++| .+|+....... ..-.....++..++.....+++.+++...-...
T Consensus 72 ~~~~~~~~~~~~llilD--glDE~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILD--GLDELEEQDQS-QERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHHHHHHcCCceEEEEe--chHhcccchhh-hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 56666667777888888 46655432221 111234455656655444557777776654433
No 499
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.62 E-value=0.056 Score=47.79 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=21.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
+.-.+.|+|++|||||||++-+..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999886554
No 500
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.62 E-value=0.06 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.++|+.||||||+++.+..+++
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 67999999999999999876654
Done!