Query 018283
Match_columns 358
No_of_seqs 230 out of 1831
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cip_A Protein (guanine nucleo 100.0 8.6E-66 2.9E-70 494.4 25.3 313 22-358 7-353 (353)
2 1azs_C GS-alpha; complex (lyas 100.0 3E-65 1E-69 496.0 26.4 333 9-358 1-394 (402)
3 3ohm_A Guanine nucleotide-bind 100.0 2E-65 6.8E-70 485.5 24.4 290 43-358 3-327 (327)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 3.5E-64 1.2E-68 484.7 23.1 318 9-358 1-361 (362)
5 4fid_A G protein alpha subunit 100.0 6E-63 2E-67 470.1 22.0 289 45-358 3-336 (340)
6 2xtz_A Guanine nucleotide-bind 100.0 1.5E-61 5.1E-66 464.8 24.9 314 45-358 7-354 (354)
7 4dkx_A RAS-related protein RAB 99.9 1.3E-26 4.5E-31 207.9 15.9 119 183-349 58-176 (216)
8 1fzq_A ADP-ribosylation factor 99.9 1.5E-23 5.1E-28 181.9 15.6 134 166-349 45-178 (181)
9 1r8s_A ADP-ribosylation factor 99.9 2E-23 6.9E-28 176.8 15.6 134 166-349 29-162 (164)
10 1upt_A ARL1, ADP-ribosylation 99.9 2.5E-23 8.5E-28 177.2 16.1 134 166-349 36-169 (171)
11 4bas_A ADP-ribosylation factor 99.9 1.1E-22 3.9E-27 177.8 17.8 137 166-351 48-191 (199)
12 2b6h_A ADP-ribosylation factor 99.9 6.6E-23 2.3E-27 179.6 14.9 133 166-348 58-190 (192)
13 2x77_A ADP-ribosylation factor 99.9 7.4E-23 2.5E-27 178.0 14.7 136 166-351 51-186 (189)
14 1f6b_A SAR1; gtpases, N-termin 99.9 7.6E-23 2.6E-27 180.2 14.6 130 183-346 65-196 (198)
15 1zj6_A ADP-ribosylation factor 99.9 2E-22 6.9E-27 175.1 17.0 133 166-348 45-177 (187)
16 1moz_A ARL1, ADP-ribosylation 99.9 4.3E-22 1.5E-26 171.8 18.1 135 166-350 47-181 (183)
17 1ksh_A ARF-like protein 2; sma 99.9 2.1E-22 7.2E-27 174.5 16.1 135 166-350 47-181 (186)
18 2hup_A RAS-related protein RAB 99.9 2.1E-22 7.1E-27 177.7 16.1 121 183-351 74-195 (201)
19 1m2o_B GTP-binding protein SAR 99.9 2.9E-22 1E-26 175.2 16.7 137 167-346 53-189 (190)
20 2h17_A ADP-ribosylation factor 99.9 1.7E-22 5.8E-27 174.8 14.9 131 166-346 50-180 (181)
21 2h57_A ADP-ribosylation factor 99.9 5.6E-22 1.9E-26 172.7 16.6 133 166-348 52-186 (190)
22 1zd9_A ADP-ribosylation factor 99.9 3.2E-22 1.1E-26 174.2 14.7 134 166-349 52-185 (188)
23 3t1o_A Gliding protein MGLA; G 99.9 5.7E-22 1.9E-26 172.6 15.6 124 183-351 70-194 (198)
24 2fu5_C RAS-related protein RAB 99.9 4.1E-22 1.4E-26 172.1 14.2 123 183-353 53-175 (183)
25 3q72_A GTP-binding protein RAD 99.9 1.4E-21 4.6E-26 165.8 16.2 121 183-350 45-165 (166)
26 2a5j_A RAS-related protein RAB 99.9 1E-21 3.5E-26 171.4 15.5 121 183-351 66-186 (191)
27 2o52_A RAS-related protein RAB 99.9 8E-22 2.8E-26 173.6 15.0 121 183-351 70-190 (200)
28 2hxs_A RAB-26, RAS-related pro 99.9 1.7E-21 5.9E-26 167.0 15.5 121 185-352 54-176 (178)
29 3oes_A GTPase rhebl1; small GT 99.9 3.6E-21 1.2E-25 169.4 17.8 122 183-351 68-189 (201)
30 1ky3_A GTP-binding protein YPT 99.9 2.3E-21 7.9E-26 166.5 15.0 124 184-352 55-181 (182)
31 3t5g_A GTP-binding protein RHE 99.9 3.1E-21 1.1E-25 166.2 15.8 122 183-351 50-171 (181)
32 3q85_A GTP-binding protein REM 99.9 2.8E-21 9.5E-26 164.3 15.2 120 183-349 47-167 (169)
33 3tw8_B RAS-related protein RAB 99.9 1.4E-21 4.9E-26 167.6 13.4 123 183-354 54-176 (181)
34 3cbq_A GTP-binding protein REM 99.9 1.2E-21 4.1E-26 172.1 13.2 121 183-350 68-189 (195)
35 2oil_A CATX-8, RAS-related pro 99.9 3.9E-21 1.3E-25 167.7 16.1 122 183-352 70-191 (193)
36 3r7w_B Gtpase2, GTP-binding pr 99.9 1.7E-22 5.8E-27 190.5 8.0 140 166-349 32-174 (331)
37 2nzj_A GTP-binding protein REM 99.9 8.4E-21 2.9E-25 162.1 17.7 122 183-351 48-171 (175)
38 1u8z_A RAS-related protein RAL 99.9 5.7E-21 2E-25 161.5 15.8 120 183-349 48-167 (168)
39 3kkq_A RAS-related protein M-R 99.9 4.5E-21 1.6E-25 165.5 15.4 120 183-349 62-182 (183)
40 2ew1_A RAS-related protein RAB 99.9 1.3E-21 4.3E-26 173.1 12.1 121 183-351 71-191 (201)
41 2bme_A RAB4A, RAS-related prot 99.9 1.8E-21 6E-26 168.4 12.7 120 183-350 55-174 (186)
42 3bc1_A RAS-related protein RAB 99.9 1.4E-20 4.8E-25 163.1 18.4 121 186-353 69-189 (195)
43 2bov_A RAla, RAS-related prote 99.9 3.3E-21 1.1E-25 169.3 14.5 123 183-352 58-180 (206)
44 3dz8_A RAS-related protein RAB 99.9 5.1E-21 1.7E-25 166.9 15.4 120 183-350 68-187 (191)
45 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.4E-21 1.5E-25 164.3 14.8 123 183-349 52-174 (177)
46 1c1y_A RAS-related protein RAP 99.9 6.9E-21 2.3E-25 161.2 15.7 120 183-348 47-166 (167)
47 3ihw_A Centg3; RAS, centaurin, 99.9 8E-21 2.7E-25 165.2 16.3 120 183-351 63-182 (184)
48 1z0f_A RAB14, member RAS oncog 99.9 5.1E-21 1.7E-25 163.9 14.8 119 183-349 60-178 (179)
49 2f7s_A C25KG, RAS-related prot 99.9 7.7E-21 2.6E-25 169.0 16.3 118 186-350 83-200 (217)
50 3o47_A ADP-ribosylation factor 99.9 2.6E-21 9E-26 184.0 13.9 134 166-349 194-327 (329)
51 2il1_A RAB12; G-protein, GDP, 99.9 2.3E-21 7.9E-26 169.5 12.4 120 183-349 71-190 (192)
52 1r2q_A RAS-related protein RAB 99.9 7.8E-21 2.7E-25 161.2 15.2 117 183-347 51-167 (170)
53 2g6b_A RAS-related protein RAB 99.9 7.3E-21 2.5E-25 163.4 15.1 122 183-352 56-177 (180)
54 2a9k_A RAS-related protein RAL 99.9 9.9E-21 3.4E-25 163.2 16.0 123 183-352 62-184 (187)
55 2gf9_A RAS-related protein RAB 99.9 1.4E-20 4.7E-25 163.8 16.7 120 183-350 67-186 (189)
56 2yc2_C IFT27, small RAB-relate 99.9 2.7E-21 9.1E-26 170.0 12.3 122 186-354 72-197 (208)
57 1x3s_A RAS-related protein RAB 99.9 9.9E-21 3.4E-25 164.7 15.6 120 183-350 60-179 (195)
58 1kao_A RAP2A; GTP-binding prot 99.9 4.3E-21 1.5E-25 162.1 13.0 120 183-349 47-166 (167)
59 3q3j_B RHO-related GTP-binding 99.9 1.1E-20 3.7E-25 168.5 16.0 131 183-350 71-204 (214)
60 2fg5_A RAB-22B, RAS-related pr 99.9 3E-21 1E-25 168.7 12.1 119 183-349 68-186 (192)
61 2fn4_A P23, RAS-related protei 99.9 1.3E-20 4.4E-25 161.6 15.8 122 183-351 53-174 (181)
62 2fh5_B SR-beta, signal recogni 99.9 1.2E-20 4E-25 167.5 16.0 75 186-269 53-130 (214)
63 1g16_A RAS-related protein SEC 99.9 6.9E-21 2.4E-25 161.7 14.0 119 183-350 48-166 (170)
64 2g3y_A GTP-binding protein GEM 99.9 1.2E-20 4E-25 168.5 15.9 121 183-350 83-204 (211)
65 1zbd_A Rabphilin-3A; G protein 99.9 2.2E-20 7.5E-25 164.2 17.4 120 183-350 53-172 (203)
66 1z08_A RAS-related protein RAB 99.8 7.2E-21 2.5E-25 161.7 13.7 118 183-348 51-168 (170)
67 3c5c_A RAS-like protein 12; GD 99.8 1E-20 3.4E-25 164.8 14.9 119 183-349 65-186 (187)
68 2efe_B Small GTP-binding prote 99.8 1.1E-20 3.6E-25 162.5 14.6 119 183-349 57-175 (181)
69 2bcg_Y Protein YP2, GTP-bindin 99.8 1.1E-20 3.9E-25 166.5 15.1 120 183-350 53-172 (206)
70 3tkl_A RAS-related protein RAB 99.8 1.6E-20 5.5E-25 163.6 15.9 121 183-351 61-181 (196)
71 2p5s_A RAS and EF-hand domain 99.8 1.1E-20 3.7E-25 166.0 14.9 124 183-348 73-196 (199)
72 3reg_A RHO-like small GTPase; 99.8 9.7E-21 3.3E-25 165.4 14.4 121 183-350 67-189 (194)
73 1ek0_A Protein (GTP-binding pr 99.8 4E-21 1.4E-25 162.9 11.6 120 183-347 48-167 (170)
74 2q3h_A RAS homolog gene family 99.8 2.6E-20 8.9E-25 163.4 17.1 134 183-352 64-198 (201)
75 1z2a_A RAS-related protein RAB 99.8 9.5E-21 3.2E-25 160.5 13.7 118 183-349 50-167 (168)
76 3cpj_B GTP-binding protein YPT 99.8 4.9E-21 1.7E-25 171.4 12.6 120 183-350 58-177 (223)
77 2iwr_A Centaurin gamma 1; ANK 99.8 4.6E-20 1.6E-24 158.4 17.9 121 183-353 50-173 (178)
78 3llu_A RAS-related GTP-binding 99.8 1.6E-20 5.6E-25 164.6 15.1 127 184-347 66-195 (196)
79 2atv_A RERG, RAS-like estrogen 99.8 2.5E-20 8.6E-25 163.1 16.0 121 183-351 72-193 (196)
80 1z06_A RAS-related protein RAB 99.8 1.5E-20 5.1E-25 163.5 14.3 119 183-348 65-187 (189)
81 4dsu_A GTPase KRAS, isoform 2B 99.8 7.3E-21 2.5E-25 164.5 12.0 121 183-351 48-168 (189)
82 1m7b_A RND3/RHOE small GTP-bin 99.8 5.3E-20 1.8E-24 159.4 16.7 131 183-349 51-183 (184)
83 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-20 7.6E-25 187.0 16.3 135 166-350 351-485 (497)
84 1vg8_A RAS-related protein RAB 99.8 3.4E-20 1.2E-24 163.1 14.8 122 183-351 53-177 (207)
85 1z0j_A RAB-22, RAS-related pro 99.8 6.8E-20 2.3E-24 155.5 16.1 118 183-348 51-168 (170)
86 2cjw_A GTP-binding protein GEM 99.8 5.3E-20 1.8E-24 161.2 15.6 121 183-350 52-173 (192)
87 1gwn_A RHO-related GTP-binding 99.8 8.8E-20 3E-24 161.6 17.2 131 183-349 72-204 (205)
88 3bwd_D RAC-like GTP-binding pr 99.8 1.8E-20 6.1E-25 161.2 12.2 128 183-348 52-180 (182)
89 2j1l_A RHO-related GTP-binding 99.8 1.4E-20 4.8E-25 167.5 11.5 134 183-352 78-212 (214)
90 2y8e_A RAB-protein 6, GH09086P 99.8 3.6E-20 1.2E-24 158.5 13.7 118 183-348 59-176 (179)
91 2j0v_A RAC-like GTP-binding pr 99.8 5.1E-20 1.7E-24 163.0 14.1 128 183-350 53-181 (212)
92 2atx_A Small GTP binding prote 99.8 1.1E-19 3.8E-24 158.5 15.9 130 183-348 62-192 (194)
93 3gj0_A GTP-binding nuclear pro 99.8 1.1E-20 3.8E-25 168.7 9.0 117 183-350 60-176 (221)
94 3clv_A RAB5 protein, putative; 99.8 1.9E-19 6.5E-24 157.0 16.4 114 186-350 92-205 (208)
95 3con_A GTPase NRAS; structural 99.8 3.6E-20 1.2E-24 160.9 11.6 124 183-354 65-188 (190)
96 2fv8_A H6, RHO-related GTP-bin 99.8 2.1E-19 7.1E-24 158.9 15.4 133 183-351 69-202 (207)
97 2ce2_X GTPase HRAS; signaling 99.8 5.3E-20 1.8E-24 155.0 10.8 118 183-348 47-164 (166)
98 2zej_A Dardarin, leucine-rich 99.8 5.5E-20 1.9E-24 159.6 11.0 124 185-349 54-178 (184)
99 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.8E-19 9.6E-24 154.1 15.1 132 183-350 49-181 (186)
100 2gco_A H9, RHO-related GTP-bin 99.8 2.4E-19 8.1E-24 157.8 14.9 131 183-349 69-200 (201)
101 2erx_A GTP-binding protein DI- 99.8 5.4E-20 1.9E-24 156.2 10.2 119 183-348 47-166 (172)
102 3cph_A RAS-related protein SEC 99.8 2.8E-19 9.6E-24 157.9 14.8 119 183-350 65-183 (213)
103 3l0i_B RAS-related protein RAB 99.8 3.9E-21 1.3E-25 168.9 2.5 118 183-348 78-195 (199)
104 4gzl_A RAS-related C3 botulinu 99.8 3.1E-19 1E-23 157.6 13.6 129 183-347 74-203 (204)
105 4djt_A GTP-binding nuclear pro 99.8 2.5E-19 8.5E-24 159.3 12.9 118 185-350 59-176 (218)
106 2gf0_A GTP-binding protein DI- 99.8 1.2E-19 4.2E-24 158.4 9.1 119 183-349 52-171 (199)
107 2wkq_A NPH1-1, RAS-related C3 99.8 3.6E-18 1.2E-22 161.1 18.7 131 183-349 199-330 (332)
108 2f9l_A RAB11B, member RAS onco 99.8 5.6E-18 1.9E-22 148.7 16.8 120 183-350 50-169 (199)
109 3th5_A RAS-related C3 botulinu 99.6 1.9E-20 6.6E-25 164.9 0.0 129 183-348 74-204 (204)
110 2lkc_A Translation initiation 99.8 2.7E-18 9.4E-23 146.9 13.5 124 184-353 52-175 (178)
111 2wji_A Ferrous iron transport 99.8 4.9E-18 1.7E-22 144.6 13.0 108 185-347 48-163 (165)
112 1svi_A GTP-binding protein YSX 99.8 1.4E-17 4.8E-22 144.9 15.2 111 188-347 70-193 (195)
113 3r7w_A Gtpase1, GTP-binding pr 99.8 9.2E-18 3.1E-22 158.0 14.7 134 166-348 36-180 (307)
114 1oix_A RAS-related protein RAB 99.7 2.9E-17 1E-21 143.4 15.9 117 183-347 74-190 (191)
115 3pqc_A Probable GTP-binding pr 99.7 1.1E-17 3.9E-22 145.0 12.6 113 187-348 68-193 (195)
116 2qu8_A Putative nucleolar GTP- 99.7 1.1E-16 3.9E-21 143.5 19.3 126 183-350 72-206 (228)
117 2dyk_A GTP-binding protein; GT 99.7 1.8E-17 6.1E-22 139.3 10.8 107 184-347 46-160 (161)
118 2wjg_A FEOB, ferrous iron tran 99.7 5.4E-17 1.8E-21 140.4 13.8 113 183-350 50-170 (188)
119 3c5h_A Glucocorticoid receptor 99.7 6.5E-18 2.2E-22 154.8 8.2 118 183-348 91-254 (255)
120 3dpu_A RAB family protein; roc 99.7 7E-17 2.4E-21 163.1 13.3 115 183-349 94-208 (535)
121 2gj8_A MNME, tRNA modification 99.7 5.2E-17 1.8E-21 139.5 8.9 107 185-348 50-165 (172)
122 2cxx_A Probable GTP-binding pr 99.7 3.1E-17 1.1E-21 141.8 7.4 118 188-352 45-187 (190)
123 4dhe_A Probable GTP-binding pr 99.7 3.5E-16 1.2E-20 139.2 13.3 123 184-349 76-211 (223)
124 1nrj_B SR-beta, signal recogni 99.7 1.8E-17 6.3E-22 147.1 4.8 76 185-269 53-135 (218)
125 3b1v_A Ferrous iron uptake tra 99.7 6.5E-16 2.2E-20 142.9 13.9 107 186-347 48-162 (272)
126 3a1s_A Iron(II) transport prot 99.7 9E-16 3.1E-20 140.9 14.1 111 183-348 48-166 (258)
127 2ged_A SR-beta, signal recogni 99.6 1.2E-15 4.2E-20 132.4 9.7 76 185-269 89-171 (193)
128 3i8s_A Ferrous iron transport 99.6 4.8E-15 1.6E-19 137.2 14.1 110 183-347 46-167 (274)
129 3k53_A Ferrous iron transport 99.6 7.4E-15 2.5E-19 135.5 15.2 112 183-348 46-165 (271)
130 3iby_A Ferrous iron transport 99.6 3.2E-15 1.1E-19 137.0 12.0 109 183-346 44-164 (256)
131 3gee_A MNME, tRNA modification 99.6 1.4E-14 4.9E-19 143.8 14.9 113 183-348 277-397 (476)
132 3iev_A GTP-binding protein ERA 99.6 2.5E-14 8.7E-19 134.5 14.8 113 186-347 58-180 (308)
133 4dcu_A GTP-binding protein ENG 99.6 5.1E-15 1.8E-19 146.6 9.8 121 183-350 239-370 (456)
134 2hjg_A GTP-binding protein ENG 99.5 1.5E-14 5E-19 142.6 10.0 120 183-349 219-349 (436)
135 1xzp_A Probable tRNA modificat 99.5 6E-14 2.1E-18 139.5 14.5 110 183-349 287-405 (482)
136 3tr5_A RF-3, peptide chain rel 99.5 2.2E-13 7.5E-18 137.0 18.3 80 168-268 69-148 (528)
137 1wf3_A GTP-binding protein; GT 99.5 1.1E-13 3.7E-18 129.8 14.5 113 183-347 51-171 (301)
138 2hjg_A GTP-binding protein ENG 99.5 2E-14 6.8E-19 141.6 9.8 110 183-348 47-164 (436)
139 1mky_A Probable GTP-binding pr 99.5 4.6E-14 1.6E-18 139.1 12.3 109 184-349 46-166 (439)
140 3p26_A Elongation factor 1 alp 99.5 7.3E-14 2.5E-18 139.3 13.4 132 166-338 96-227 (483)
141 3sjy_A Translation initiation 99.5 1.1E-13 3.9E-18 134.8 14.5 117 186-347 74-190 (403)
142 2e87_A Hypothetical protein PH 99.5 5E-13 1.7E-17 128.2 18.7 118 183-349 210-336 (357)
143 3l82_B F-box only protein 4; T 99.5 8.8E-15 3E-19 128.4 4.5 112 193-350 108-224 (227)
144 3lxw_A GTPase IMAP family memb 99.5 8.2E-13 2.8E-17 120.2 16.6 76 183-268 66-153 (247)
145 2qtf_A Protein HFLX, GTP-bindi 99.5 2.1E-12 7.3E-17 124.1 20.3 123 185-350 224-355 (364)
146 3j2k_7 ERF3, eukaryotic polype 99.5 6.8E-13 2.3E-17 130.7 17.3 136 167-341 81-217 (439)
147 1d2e_A Elongation factor TU (E 99.5 3.7E-13 1.3E-17 130.9 14.6 80 167-267 52-132 (397)
148 2c78_A Elongation factor TU-A; 99.5 4.9E-13 1.7E-17 130.4 15.4 79 168-267 62-141 (405)
149 3t5d_A Septin-7; GTP-binding p 99.5 1.3E-13 4.3E-18 127.5 10.4 114 183-346 61-201 (274)
150 3lxx_A GTPase IMAP family memb 99.5 3.2E-13 1.1E-17 121.9 12.8 76 183-269 74-160 (239)
151 1wb1_A Translation elongation 99.5 2.6E-13 8.8E-18 135.2 12.8 120 183-348 69-188 (482)
152 3qq5_A Small GTP-binding prote 99.5 2.4E-14 8.3E-19 140.0 5.2 105 188-348 84-195 (423)
153 1s0u_A EIF-2-gamma, translatio 99.5 2.3E-13 7.8E-18 132.9 11.9 116 187-347 81-196 (408)
154 1jny_A EF-1-alpha, elongation 99.5 4.1E-13 1.4E-17 132.1 13.4 119 183-341 80-205 (435)
155 3geh_A MNME, tRNA modification 99.5 6.3E-13 2.2E-17 131.5 14.5 71 183-270 268-346 (462)
156 1kk1_A EIF2gamma; initiation o 99.5 4.2E-13 1.4E-17 131.1 13.1 116 187-347 83-198 (410)
157 1zun_B Sulfate adenylate trans 99.5 4.4E-13 1.5E-17 131.9 13.2 128 166-341 89-216 (434)
158 2qag_A Septin-2, protein NEDD5 99.4 1.4E-13 4.9E-18 132.2 9.4 114 185-349 93-233 (361)
159 4dcu_A GTP-binding protein ENG 99.4 1.7E-13 5.8E-18 135.6 10.1 109 183-347 67-183 (456)
160 1lnz_A SPO0B-associated GTP-bi 99.4 3.2E-13 1.1E-17 128.6 11.6 117 187-349 206-330 (342)
161 3izy_P Translation initiation 99.4 5.5E-14 1.9E-18 141.1 6.4 117 185-347 50-166 (537)
162 2elf_A Protein translation elo 99.4 6.5E-13 2.2E-17 127.9 13.7 128 166-348 45-179 (370)
163 1mky_A Probable GTP-binding pr 99.4 6.6E-13 2.3E-17 130.8 13.7 118 185-349 226-355 (439)
164 2xtp_A GTPase IMAP family memb 99.4 1.9E-12 6.4E-17 118.2 14.7 128 183-349 67-208 (260)
165 1f60_A Elongation factor EEF1A 99.4 2.8E-12 9.6E-17 127.0 16.2 84 167-267 71-158 (458)
166 3cb4_D GTP-binding protein LEP 99.4 8E-13 2.7E-17 134.5 12.3 113 184-347 68-180 (599)
167 1zo1_I IF2, translation initia 99.4 2.2E-13 7.6E-18 135.6 7.6 114 184-345 48-163 (501)
168 1g7s_A Translation initiation 99.4 2.8E-12 9.7E-17 130.5 15.5 142 186-348 69-217 (594)
169 2ywe_A GTP-binding protein LEP 99.4 1.6E-12 5.6E-17 132.1 13.6 114 184-348 70-183 (600)
170 3izq_1 HBS1P, elongation facto 99.4 4.4E-13 1.5E-17 137.1 9.1 122 183-339 241-362 (611)
171 1r5b_A Eukaryotic peptide chai 99.4 1.2E-12 4E-17 130.0 11.7 89 166-268 106-195 (467)
172 3l2o_B F-box only protein 4; s 99.4 1E-13 3.4E-18 127.3 3.0 112 193-350 193-309 (312)
173 3avx_A Elongation factor TS, e 99.3 1.3E-11 4.5E-16 131.9 16.3 71 183-268 355-426 (1289)
174 2dy1_A Elongation factor G; tr 99.3 1.7E-11 5.8E-16 126.7 16.8 70 183-267 70-139 (665)
175 3def_A T7I23.11 protein; chlor 99.3 9.9E-12 3.4E-16 113.9 13.3 75 183-267 80-164 (262)
176 2h5e_A Peptide chain release f 99.3 4.3E-12 1.5E-16 127.6 9.9 81 167-268 68-148 (529)
177 3mca_A HBS1, elongation factor 99.3 1.5E-12 5.1E-17 132.7 6.5 76 183-268 251-329 (592)
178 1pui_A ENGB, probable GTP-bind 99.3 2.1E-11 7.1E-16 107.0 12.3 112 188-348 73-198 (210)
179 1ega_A Protein (GTP-binding pr 99.3 4.2E-11 1.4E-15 112.1 13.4 69 184-268 53-130 (301)
180 1dar_A EF-G, elongation factor 99.3 4.5E-11 1.5E-15 123.9 14.8 83 166-269 62-144 (691)
181 2aka_B Dynamin-1; fusion prote 99.2 7.2E-12 2.5E-16 116.4 7.5 69 186-268 124-206 (299)
182 1u0l_A Probable GTPase ENGC; p 99.2 2E-11 6.7E-16 114.4 10.4 105 188-345 64-169 (301)
183 1h65_A Chloroplast outer envel 99.2 6.2E-11 2.1E-15 109.0 13.4 76 183-268 83-168 (270)
184 2rdo_7 EF-G, elongation factor 99.2 9.8E-11 3.4E-15 121.6 16.1 70 185-269 80-149 (704)
185 2xex_A Elongation factor G; GT 99.2 2.5E-10 8.7E-15 118.3 16.3 72 183-269 71-142 (693)
186 2qnr_A Septin-2, protein NEDD5 99.2 3.2E-11 1.1E-15 112.9 7.5 115 184-349 73-214 (301)
187 2j69_A Bacterial dynamin-like 99.2 6.6E-10 2.3E-14 115.3 17.5 134 187-349 174-325 (695)
188 2wsm_A Hydrogenase expression/ 99.1 6.4E-09 2.2E-13 91.9 18.2 107 185-349 107-214 (221)
189 3p32_A Probable GTPase RV1496/ 99.1 1.6E-09 5.6E-14 103.6 14.9 116 184-349 169-284 (355)
190 3t34_A Dynamin-related protein 99.1 2.7E-10 9.1E-15 109.2 8.8 72 185-269 134-218 (360)
191 1n0u_A EF-2, elongation factor 99.1 3.9E-10 1.3E-14 119.3 10.4 70 184-268 95-164 (842)
192 2qag_C Septin-7; cell cycle, c 99.0 7.3E-10 2.5E-14 108.1 8.8 22 47-68 31-52 (418)
193 2hf9_A Probable hydrogenase ni 99.0 2.9E-09 1E-13 94.4 11.5 61 254-349 164-224 (226)
194 1udx_A The GTP-binding protein 99.0 5.2E-09 1.8E-13 102.0 14.1 114 187-349 205-325 (416)
195 1yrb_A ATP(GTP)binding protein 99.0 2.8E-09 9.4E-14 96.9 11.2 73 186-269 108-186 (262)
196 2x2e_A Dynamin-1; nitration, h 98.9 6.4E-10 2.2E-14 106.3 6.2 69 186-268 129-211 (353)
197 1jwy_B Dynamin A GTPase domain 98.9 2.2E-09 7.4E-14 100.4 9.3 110 185-307 129-261 (315)
198 3vqt_A RF-3, peptide chain rel 98.9 3.3E-08 1.1E-12 99.7 17.2 84 165-269 84-167 (548)
199 2qpt_A EH domain-containing pr 98.9 3E-09 1E-13 107.4 9.3 68 187-268 154-232 (550)
200 2www_A Methylmalonic aciduria 98.8 4.2E-08 1.4E-12 93.5 12.6 112 185-347 165-277 (349)
201 1wxq_A GTP-binding protein; st 98.7 1E-08 3.6E-13 99.4 6.2 37 186-222 70-113 (397)
202 2p67_A LAO/AO transport system 98.7 5.1E-08 1.7E-12 92.6 10.0 115 184-348 146-260 (341)
203 1jal_A YCHF protein; nucleotid 98.6 4E-07 1.4E-11 86.9 13.1 37 186-222 65-108 (363)
204 2dby_A GTP-binding protein; GD 98.6 5.8E-07 2E-11 86.1 13.9 38 185-222 67-111 (368)
205 2yv5_A YJEQ protein; hydrolase 98.4 9E-07 3.1E-11 82.6 9.5 112 184-344 47-164 (302)
206 3j25_A Tetracycline resistance 98.4 1E-07 3.4E-12 98.0 3.2 84 165-269 51-134 (638)
207 3h2y_A GTPase family protein; 98.4 1.1E-06 3.8E-11 84.3 9.7 103 196-346 55-157 (368)
208 3ec1_A YQEH GTPase; atnos1, at 98.4 1.5E-06 5E-11 83.4 10.3 105 195-347 56-160 (369)
209 2ohf_A Protein OLA1, GTP-bindi 98.2 4.3E-06 1.5E-10 80.6 10.5 38 186-223 85-129 (396)
210 2qm8_A GTPase/ATPase; G protei 98.2 5E-06 1.7E-10 78.7 9.4 35 184-221 145-179 (337)
211 4fn5_A EF-G 1, elongation fact 98.1 9.8E-06 3.3E-10 84.2 10.9 71 184-269 82-152 (709)
212 3zvr_A Dynamin-1; hydrolase, D 98.0 1.7E-05 5.8E-10 82.4 10.1 70 186-269 149-232 (772)
213 4a9a_A Ribosome-interacting GT 97.6 9.5E-05 3.2E-09 70.8 7.8 74 183-267 115-195 (376)
214 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 0.00016 5.6E-09 69.6 8.4 36 187-222 85-127 (392)
215 1puj_A YLQF, conserved hypothe 97.3 0.00034 1.2E-08 64.3 7.0 100 194-349 6-106 (282)
216 2qag_B Septin-6, protein NEDD5 97.1 0.0018 6E-08 63.0 9.2 20 49-68 44-63 (427)
217 3ec1_A YQEH GTPase; atnos1, at 96.9 0.0003 1E-08 67.3 2.6 23 46-68 161-183 (369)
218 1bif_A 6-phosphofructo-2-kinas 96.7 0.00094 3.2E-08 65.8 4.0 34 188-221 88-131 (469)
219 2j37_W Signal recognition part 96.7 0.0066 2.2E-07 60.3 9.9 65 185-267 182-253 (504)
220 3h2y_A GTPase family protein; 96.6 0.0013 4.5E-08 62.7 3.9 23 46-68 159-181 (368)
221 3dm5_A SRP54, signal recogniti 96.1 0.029 1E-06 54.6 10.8 22 47-68 100-121 (443)
222 3szr_A Interferon-induced GTP- 96.0 0.01 3.5E-07 60.4 7.2 24 48-71 46-69 (608)
223 1lvg_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 53.9 3.4 24 48-71 5-28 (198)
224 1kgd_A CASK, peripheral plasma 96.0 0.0038 1.3E-07 52.9 3.3 23 49-71 7-29 (180)
225 1ye8_A Protein THEP1, hypothet 95.8 0.0049 1.7E-07 52.5 3.3 21 48-68 1-21 (178)
226 3kl4_A SRP54, signal recogniti 95.8 0.13 4.3E-06 50.0 13.6 21 48-68 98-118 (433)
227 1j8m_F SRP54, signal recogniti 95.8 0.14 4.9E-06 47.0 13.4 20 49-68 100-119 (297)
228 1kag_A SKI, shikimate kinase I 95.7 0.007 2.4E-07 50.4 3.7 27 48-74 5-31 (173)
229 3a00_A Guanylate kinase, GMP k 95.6 0.0062 2.1E-07 51.8 3.3 22 50-71 4-25 (186)
230 1zp6_A Hypothetical protein AT 95.6 0.0055 1.9E-07 51.9 2.8 23 48-70 10-32 (191)
231 4gp7_A Metallophosphoesterase; 95.6 0.0053 1.8E-07 51.6 2.5 18 49-66 11-28 (171)
232 3tr0_A Guanylate kinase, GMP k 95.6 0.0069 2.3E-07 51.9 3.3 24 48-71 8-31 (205)
233 2v3c_C SRP54, signal recogniti 95.5 0.086 2.9E-06 51.2 11.3 21 48-68 100-120 (432)
234 1ex7_A Guanylate kinase; subst 95.5 0.0073 2.5E-07 51.9 3.3 21 50-70 4-24 (186)
235 3tau_A Guanylate kinase, GMP k 95.5 0.0081 2.8E-07 52.1 3.7 25 48-72 9-33 (208)
236 3c8u_A Fructokinase; YP_612366 95.4 0.0075 2.6E-07 52.3 3.1 27 45-71 20-46 (208)
237 3cnl_A YLQF, putative uncharac 95.4 0.0066 2.3E-07 55.0 2.6 92 195-345 5-97 (262)
238 1qhx_A CPT, protein (chloramph 95.4 0.009 3.1E-07 50.0 3.3 25 49-73 5-29 (178)
239 1z6g_A Guanylate kinase; struc 95.4 0.0088 3E-07 52.4 3.3 26 46-71 22-47 (218)
240 1s96_A Guanylate kinase, GMP k 95.4 0.0095 3.2E-07 52.4 3.5 27 46-72 15-41 (219)
241 1znw_A Guanylate kinase, GMP k 95.3 0.0093 3.2E-07 51.6 3.3 25 47-71 20-44 (207)
242 3tlx_A Adenylate kinase 2; str 95.3 0.02 7E-07 50.9 5.6 28 44-71 26-53 (243)
243 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.9E-07 48.8 3.3 23 49-71 3-25 (173)
244 3sop_A Neuronal-specific septi 95.2 0.0099 3.4E-07 54.1 3.1 24 48-71 3-26 (270)
245 3asz_A Uridine kinase; cytidin 95.2 0.011 3.7E-07 51.1 3.2 26 47-72 6-31 (211)
246 1cke_A CK, MSSA, protein (cyti 95.2 0.012 4.1E-07 51.3 3.5 26 47-72 5-30 (227)
247 3ney_A 55 kDa erythrocyte memb 95.2 0.011 3.9E-07 51.1 3.3 23 49-71 21-43 (197)
248 3lw7_A Adenylate kinase relate 95.1 0.01 3.5E-07 49.0 2.9 19 49-67 3-21 (179)
249 2j41_A Guanylate kinase; GMP, 95.1 0.011 3.8E-07 50.6 3.1 25 47-71 6-30 (207)
250 3tif_A Uncharacterized ABC tra 95.1 0.01 3.4E-07 52.9 2.8 24 49-72 33-56 (235)
251 2bdt_A BH3686; alpha-beta prot 95.1 0.011 3.6E-07 50.2 2.9 20 49-68 4-23 (189)
252 1htw_A HI0065; nucleotide-bind 95.0 0.015 5.1E-07 48.5 3.5 26 46-71 32-57 (158)
253 2qor_A Guanylate kinase; phosp 95.0 0.012 4E-07 50.8 2.9 23 46-68 11-33 (204)
254 3cm0_A Adenylate kinase; ATP-b 95.0 0.014 4.8E-07 49.1 3.2 24 46-69 3-26 (186)
255 3fb4_A Adenylate kinase; psych 94.9 0.015 5E-07 50.4 3.4 24 48-71 1-24 (216)
256 1ly1_A Polynucleotide kinase; 94.9 0.013 4.3E-07 49.0 2.9 21 49-69 4-24 (181)
257 2ehv_A Hypothetical protein PH 94.9 0.012 4.1E-07 51.9 2.9 20 49-68 32-51 (251)
258 2p5t_B PEZT; postsegregational 94.9 0.011 3.9E-07 52.9 2.7 28 45-72 30-57 (253)
259 4eun_A Thermoresistant glucoki 94.9 0.015 5E-07 50.0 3.3 25 47-71 29-53 (200)
260 3dl0_A Adenylate kinase; phosp 94.9 0.016 5.5E-07 50.2 3.5 24 48-71 1-24 (216)
261 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5.1E-07 49.9 3.2 29 47-75 25-53 (199)
262 1lw7_A Transcriptional regulat 94.8 0.013 4.5E-07 55.5 3.1 27 47-73 170-196 (365)
263 3uie_A Adenylyl-sulfate kinase 94.8 0.021 7.3E-07 48.9 4.2 23 46-68 24-46 (200)
264 2pcj_A ABC transporter, lipopr 94.8 0.013 4.3E-07 51.8 2.7 24 49-72 32-55 (224)
265 1knq_A Gluconate kinase; ALFA/ 94.8 0.016 5.6E-07 48.3 3.3 23 48-70 9-31 (175)
266 2onk_A Molybdate/tungstate ABC 94.8 0.015 5.2E-07 51.9 3.1 24 49-72 26-49 (240)
267 3t61_A Gluconokinase; PSI-biol 94.8 0.017 5.7E-07 49.6 3.3 25 47-71 18-42 (202)
268 2jaq_A Deoxyguanosine kinase; 94.8 0.017 5.9E-07 49.1 3.4 21 49-69 2-22 (205)
269 3n70_A Transport activator; si 94.8 0.039 1.3E-06 44.8 5.4 37 32-68 9-45 (145)
270 2bbw_A Adenylate kinase 4, AK4 94.7 0.015 5E-07 51.8 2.9 22 47-68 27-48 (246)
271 4a74_A DNA repair and recombin 94.7 0.015 5.1E-07 50.5 2.9 21 49-69 27-47 (231)
272 2ff7_A Alpha-hemolysin translo 94.7 0.015 5E-07 52.2 2.8 24 49-72 37-60 (247)
273 3umf_A Adenylate kinase; rossm 94.7 0.013 4.6E-07 51.5 2.5 22 50-71 32-53 (217)
274 3sr0_A Adenylate kinase; phosp 94.7 0.019 6.5E-07 50.0 3.4 25 48-72 1-25 (206)
275 3gfo_A Cobalt import ATP-bindi 94.7 0.015 5.1E-07 53.1 2.8 24 49-72 36-59 (275)
276 1aky_A Adenylate kinase; ATP:A 94.6 0.021 7.2E-07 49.7 3.6 26 46-71 3-28 (220)
277 1nks_A Adenylate kinase; therm 94.6 0.018 6E-07 48.6 3.0 21 49-69 3-23 (194)
278 1b0u_A Histidine permease; ABC 94.6 0.016 5.4E-07 52.4 2.8 24 49-72 34-57 (262)
279 1sgw_A Putative ABC transporte 94.6 0.016 5.6E-07 50.8 2.8 23 49-71 37-59 (214)
280 1ji0_A ABC transporter; ATP bi 94.6 0.016 5.6E-07 51.6 2.8 24 49-72 34-57 (240)
281 1mv5_A LMRA, multidrug resista 94.6 0.017 5.7E-07 51.6 2.8 24 49-72 30-53 (243)
282 1g6h_A High-affinity branched- 94.5 0.017 5.9E-07 52.0 2.8 24 49-72 35-58 (257)
283 2if2_A Dephospho-COA kinase; a 94.5 0.019 6.4E-07 49.2 2.9 21 49-69 3-23 (204)
284 2v54_A DTMP kinase, thymidylat 94.5 0.021 7.1E-07 48.8 3.2 25 46-70 3-27 (204)
285 2bwj_A Adenylate kinase 5; pho 94.5 0.025 8.4E-07 48.0 3.6 26 46-71 11-36 (199)
286 4g1u_C Hemin import ATP-bindin 94.5 0.017 5.7E-07 52.5 2.6 24 49-72 39-62 (266)
287 3trf_A Shikimate kinase, SK; a 94.5 0.022 7.6E-07 47.9 3.3 25 48-72 6-30 (185)
288 2pze_A Cystic fibrosis transme 94.5 0.018 6.2E-07 50.9 2.8 24 49-72 36-59 (229)
289 2ixe_A Antigen peptide transpo 94.5 0.018 6.1E-07 52.4 2.8 24 49-72 47-70 (271)
290 2rhm_A Putative kinase; P-loop 94.4 0.019 6.5E-07 48.5 2.8 24 47-70 5-28 (193)
291 2cbz_A Multidrug resistance-as 94.4 0.019 6.5E-07 51.1 2.9 23 49-71 33-55 (237)
292 1kht_A Adenylate kinase; phosp 94.4 0.02 6.7E-07 48.2 2.9 22 48-69 4-25 (192)
293 1e4v_A Adenylate kinase; trans 94.4 0.023 7.9E-07 49.3 3.4 24 48-71 1-24 (214)
294 2c95_A Adenylate kinase 1; tra 94.4 0.026 8.9E-07 47.7 3.6 27 45-71 7-33 (196)
295 2olj_A Amino acid ABC transpor 94.4 0.019 6.4E-07 52.0 2.8 24 49-72 52-75 (263)
296 2pt5_A Shikimate kinase, SK; a 94.3 0.026 8.8E-07 46.6 3.4 23 49-71 2-24 (168)
297 1vpl_A ABC transporter, ATP-bi 94.3 0.02 6.7E-07 51.7 2.8 24 49-72 43-66 (256)
298 1via_A Shikimate kinase; struc 94.3 0.025 8.6E-07 47.2 3.3 24 49-72 6-29 (175)
299 2qi9_C Vitamin B12 import ATP- 94.3 0.02 6.8E-07 51.4 2.8 24 49-72 28-51 (249)
300 3b85_A Phosphate starvation-in 94.3 0.019 6.5E-07 50.1 2.6 23 48-70 23-45 (208)
301 3aez_A Pantothenate kinase; tr 94.2 0.022 7.4E-07 53.0 3.0 27 46-72 89-115 (312)
302 1t9h_A YLOQ, probable GTPase E 94.2 0.06 2.1E-06 49.8 5.9 52 204-268 80-131 (307)
303 2eyu_A Twitching motility prot 94.2 0.024 8.3E-07 51.2 3.2 23 46-68 24-46 (261)
304 3ec2_A DNA replication protein 94.2 0.021 7.1E-07 48.0 2.6 22 47-68 38-59 (180)
305 2nq2_C Hypothetical ABC transp 94.2 0.022 7.5E-07 51.2 2.8 24 49-72 33-56 (253)
306 2yz2_A Putative ABC transporte 94.2 0.023 7.7E-07 51.5 2.8 24 49-72 35-58 (266)
307 2d2e_A SUFC protein; ABC-ATPas 94.2 0.023 8E-07 50.9 2.9 22 49-70 31-52 (250)
308 3lnc_A Guanylate kinase, GMP k 94.1 0.016 5.4E-07 51.0 1.7 21 48-68 28-48 (231)
309 2ihy_A ABC transporter, ATP-bi 94.1 0.023 7.9E-07 51.9 2.8 24 49-72 49-72 (279)
310 1nn5_A Similar to deoxythymidy 94.1 0.028 9.5E-07 48.3 3.2 24 45-68 7-30 (215)
311 2i3b_A HCR-ntpase, human cance 94.1 0.028 9.7E-07 48.2 3.2 20 49-68 3-22 (189)
312 2ghi_A Transport protein; mult 94.1 0.024 8.1E-07 51.2 2.8 23 49-71 48-70 (260)
313 2wwf_A Thymidilate kinase, put 94.1 0.028 9.5E-07 48.3 3.2 23 46-68 9-31 (212)
314 2v9p_A Replication protein E1; 94.1 0.042 1.4E-06 50.8 4.5 27 45-71 124-150 (305)
315 1y63_A LMAJ004144AAA protein; 94.0 0.029 1E-06 47.4 3.2 24 47-70 10-33 (184)
316 3nh6_A ATP-binding cassette SU 94.0 0.017 5.8E-07 53.6 1.7 25 49-73 82-106 (306)
317 3iij_A Coilin-interacting nucl 94.0 0.027 9.3E-07 47.2 2.9 24 47-70 11-34 (180)
318 3fvq_A Fe(3+) IONS import ATP- 94.0 0.027 9.2E-07 53.4 3.1 24 49-72 32-55 (359)
319 2cdn_A Adenylate kinase; phosp 94.0 0.034 1.1E-06 47.6 3.5 26 46-71 19-44 (201)
320 1odf_A YGR205W, hypothetical 3 94.0 0.045 1.5E-06 50.3 4.5 27 45-71 29-55 (290)
321 1rz3_A Hypothetical protein rb 94.0 0.041 1.4E-06 47.2 4.1 23 46-68 21-43 (201)
322 2jeo_A Uridine-cytidine kinase 94.0 0.03 1E-06 49.7 3.3 26 46-71 24-49 (245)
323 1zak_A Adenylate kinase; ATP:A 94.0 0.034 1.2E-06 48.4 3.6 25 47-71 5-29 (222)
324 3kta_A Chromosome segregation 94.0 0.035 1.2E-06 46.5 3.5 24 49-72 28-51 (182)
325 1jjv_A Dephospho-COA kinase; P 94.0 0.028 9.4E-07 48.3 2.9 21 49-69 4-24 (206)
326 2iyv_A Shikimate kinase, SK; t 94.0 0.035 1.2E-06 46.6 3.5 25 48-72 3-27 (184)
327 2zu0_C Probable ATP-dependent 93.9 0.027 9.3E-07 51.0 2.9 22 49-70 48-69 (267)
328 2plr_A DTMP kinase, probable t 93.9 0.033 1.1E-06 47.6 3.4 22 48-69 5-26 (213)
329 1tev_A UMP-CMP kinase; ploop, 93.9 0.034 1.2E-06 46.8 3.3 22 48-69 4-25 (196)
330 1zd8_A GTP:AMP phosphotransfer 93.9 0.036 1.2E-06 48.5 3.5 25 47-71 7-31 (227)
331 2f1r_A Molybdopterin-guanine d 93.9 0.017 5.9E-07 48.7 1.4 23 49-71 4-26 (171)
332 1gvn_B Zeta; postsegregational 93.8 0.039 1.3E-06 50.5 3.7 25 47-71 33-57 (287)
333 2pbr_A DTMP kinase, thymidylat 93.8 0.035 1.2E-06 46.7 3.1 20 49-68 2-21 (195)
334 1z47_A CYSA, putative ABC-tran 93.7 0.033 1.1E-06 52.7 3.2 24 49-72 43-66 (355)
335 3rlf_A Maltose/maltodextrin im 93.7 0.033 1.1E-06 53.2 3.1 24 49-72 31-54 (381)
336 2yyz_A Sugar ABC transporter, 93.7 0.033 1.1E-06 52.8 3.2 24 49-72 31-54 (359)
337 2rcn_A Probable GTPase ENGC; Y 93.7 0.21 7.2E-06 47.2 8.7 21 323-343 193-213 (358)
338 2pjz_A Hypothetical protein ST 93.7 0.029 1E-06 50.7 2.7 23 49-71 32-54 (263)
339 3be4_A Adenylate kinase; malar 93.7 0.042 1.4E-06 47.8 3.6 25 47-71 5-29 (217)
340 3tui_C Methionine import ATP-b 93.7 0.034 1.2E-06 52.8 3.1 24 49-72 56-79 (366)
341 2z0h_A DTMP kinase, thymidylat 93.7 0.036 1.2E-06 46.9 3.1 20 49-68 2-21 (197)
342 1e6c_A Shikimate kinase; phosp 93.7 0.04 1.4E-06 45.6 3.3 23 49-71 4-26 (173)
343 2xb4_A Adenylate kinase; ATP-b 93.7 0.039 1.3E-06 48.2 3.4 22 49-70 2-23 (223)
344 2qt1_A Nicotinamide riboside k 93.7 0.036 1.2E-06 47.6 3.0 24 47-70 21-44 (207)
345 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.034 1.2E-06 48.2 2.9 20 49-68 25-44 (235)
346 2it1_A 362AA long hypothetical 93.6 0.035 1.2E-06 52.7 3.1 24 49-72 31-54 (362)
347 1v43_A Sugar-binding transport 93.6 0.035 1.2E-06 52.9 3.1 24 49-72 39-62 (372)
348 1ukz_A Uridylate kinase; trans 93.6 0.045 1.5E-06 46.7 3.6 25 47-71 15-39 (203)
349 2ze6_A Isopentenyl transferase 93.6 0.035 1.2E-06 49.8 2.9 19 50-68 4-22 (253)
350 1qf9_A UMP/CMP kinase, protein 93.6 0.042 1.4E-06 46.1 3.3 22 49-70 8-29 (194)
351 1vht_A Dephospho-COA kinase; s 93.6 0.036 1.2E-06 48.1 2.9 23 47-69 4-26 (218)
352 1sq5_A Pantothenate kinase; P- 93.6 0.084 2.9E-06 48.7 5.6 27 46-72 79-105 (308)
353 1g29_1 MALK, maltose transport 93.5 0.037 1.3E-06 52.7 3.2 24 49-72 31-54 (372)
354 4e22_A Cytidylate kinase; P-lo 93.5 0.039 1.3E-06 49.3 3.2 23 46-68 26-48 (252)
355 2x8a_A Nuclear valosin-contain 93.5 0.035 1.2E-06 50.4 2.8 23 50-72 47-69 (274)
356 2yvu_A Probable adenylyl-sulfa 93.5 0.038 1.3E-06 46.6 2.9 23 46-68 12-34 (186)
357 2bbs_A Cystic fibrosis transme 93.4 0.03 1E-06 51.4 2.3 23 49-71 66-88 (290)
358 2vli_A Antibiotic resistance p 93.4 0.035 1.2E-06 46.4 2.5 24 48-71 6-29 (183)
359 1rj9_A FTSY, signal recognitio 93.4 0.04 1.4E-06 50.9 3.0 24 48-71 103-126 (304)
360 3tqc_A Pantothenate kinase; bi 93.3 0.045 1.5E-06 51.1 3.3 24 48-71 93-116 (321)
361 1m7g_A Adenylylsulfate kinase; 93.3 0.065 2.2E-06 46.3 4.2 23 46-68 24-46 (211)
362 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.041 1.4E-06 49.4 3.0 21 48-68 5-25 (260)
363 2pez_A Bifunctional 3'-phospho 93.3 0.044 1.5E-06 45.9 3.0 22 47-68 5-26 (179)
364 3d31_A Sulfate/molybdate ABC t 93.3 0.03 1E-06 52.8 2.1 24 49-72 28-51 (348)
365 2cvh_A DNA repair and recombin 93.3 0.043 1.5E-06 47.2 2.9 20 49-68 22-41 (220)
366 1jbk_A CLPB protein; beta barr 93.2 0.059 2E-06 44.6 3.7 22 47-68 43-64 (195)
367 1gtv_A TMK, thymidylate kinase 93.2 0.021 7.2E-07 49.1 0.8 20 49-68 2-21 (214)
368 1uf9_A TT1252 protein; P-loop, 93.2 0.044 1.5E-06 46.5 2.8 25 46-70 7-31 (203)
369 1zuh_A Shikimate kinase; alpha 93.2 0.054 1.9E-06 44.8 3.3 24 49-72 9-32 (168)
370 1tq4_A IIGP1, interferon-induc 93.2 0.094 3.2E-06 50.6 5.4 27 45-71 67-93 (413)
371 3co5_A Putative two-component 93.1 0.064 2.2E-06 43.4 3.6 23 45-67 25-47 (143)
372 1ixz_A ATP-dependent metallopr 93.1 0.054 1.8E-06 48.1 3.3 23 50-72 52-74 (254)
373 1np6_A Molybdopterin-guanine d 93.0 0.05 1.7E-06 46.0 2.9 21 48-68 7-27 (174)
374 1in4_A RUVB, holliday junction 92.9 0.11 3.8E-06 48.3 5.4 24 48-71 52-75 (334)
375 2gza_A Type IV secretion syste 92.9 0.093 3.2E-06 49.6 4.9 28 45-72 173-200 (361)
376 1ak2_A Adenylate kinase isoenz 92.8 0.066 2.2E-06 47.0 3.5 26 46-71 15-40 (233)
377 1n0w_A DNA repair protein RAD5 92.8 0.053 1.8E-06 47.4 2.9 22 48-69 25-46 (243)
378 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.051 1.8E-06 50.8 2.9 27 46-72 170-196 (330)
379 1cr0_A DNA primase/helicase; R 92.8 0.052 1.8E-06 49.5 2.9 22 49-70 37-58 (296)
380 1oxx_K GLCV, glucose, ABC tran 92.8 0.032 1.1E-06 52.8 1.4 24 49-72 33-56 (353)
381 1puj_A YLQF, conserved hypothe 92.7 0.11 3.8E-06 47.3 5.0 24 45-68 118-141 (282)
382 2kjq_A DNAA-related protein; s 92.7 0.05 1.7E-06 44.6 2.4 21 48-68 37-57 (149)
383 2yv5_A YJEQ protein; hydrolase 92.7 0.063 2.2E-06 49.5 3.3 23 48-71 166-188 (302)
384 3jvv_A Twitching mobility prot 92.6 0.056 1.9E-06 51.1 2.9 20 49-68 125-144 (356)
385 2p65_A Hypothetical protein PF 92.6 0.061 2.1E-06 44.5 2.8 22 47-68 43-64 (187)
386 3nwj_A ATSK2; P loop, shikimat 92.6 0.057 1.9E-06 48.4 2.8 27 47-73 48-74 (250)
387 3gd7_A Fusion complex of cysti 92.6 0.056 1.9E-06 51.8 2.9 23 49-71 49-71 (390)
388 2vp4_A Deoxynucleoside kinase; 92.6 0.042 1.4E-06 48.3 1.9 25 46-70 19-43 (230)
389 3b9q_A Chloroplast SRP recepto 92.5 0.066 2.2E-06 49.4 3.2 22 49-70 102-123 (302)
390 1uj2_A Uridine-cytidine kinase 92.5 0.076 2.6E-06 47.3 3.5 24 46-69 21-44 (252)
391 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.15 5E-06 50.0 5.7 27 44-70 135-161 (460)
392 1iy2_A ATP-dependent metallopr 92.4 0.074 2.5E-06 48.0 3.3 23 50-72 76-98 (278)
393 1u0l_A Probable GTPase ENGC; p 92.4 0.062 2.1E-06 49.4 2.8 24 48-71 170-193 (301)
394 3r20_A Cytidylate kinase; stru 92.4 0.082 2.8E-06 46.9 3.5 26 46-71 8-33 (233)
395 1nlf_A Regulatory protein REPA 92.3 0.067 2.3E-06 48.4 2.9 20 49-68 32-51 (279)
396 2ewv_A Twitching motility prot 92.3 0.072 2.5E-06 50.6 3.2 22 47-68 136-157 (372)
397 1ltq_A Polynucleotide kinase; 92.1 0.071 2.4E-06 48.6 2.9 21 49-69 4-24 (301)
398 1c9k_A COBU, adenosylcobinamid 92.1 0.076 2.6E-06 45.2 2.8 19 50-68 2-20 (180)
399 3cnl_A YLQF, putative uncharac 92.1 0.074 2.5E-06 48.0 3.0 21 48-68 100-120 (262)
400 3e70_C DPA, signal recognition 92.1 0.081 2.8E-06 49.4 3.2 24 47-70 129-152 (328)
401 2grj_A Dephospho-COA kinase; T 92.1 0.091 3.1E-06 45.1 3.3 27 46-72 11-37 (192)
402 2obl_A ESCN; ATPase, hydrolase 92.0 0.093 3.2E-06 49.4 3.6 28 46-73 70-97 (347)
403 2rcn_A Probable GTPase ENGC; Y 92.0 0.075 2.5E-06 50.3 2.9 21 48-68 216-236 (358)
404 1nij_A Hypothetical protein YJ 92.0 0.068 2.3E-06 49.6 2.5 22 49-70 6-27 (318)
405 2f6r_A COA synthase, bifunctio 91.9 0.085 2.9E-06 48.0 3.1 23 47-69 75-97 (281)
406 1xjc_A MOBB protein homolog; s 91.8 0.089 3E-06 44.3 2.9 20 49-68 6-25 (169)
407 4eaq_A DTMP kinase, thymidylat 91.8 0.1 3.5E-06 46.0 3.4 25 46-70 25-49 (229)
408 3b5x_A Lipid A export ATP-bind 91.8 0.078 2.7E-06 53.5 3.0 26 48-73 370-395 (582)
409 3b60_A Lipid A export ATP-bind 91.8 0.076 2.6E-06 53.5 2.9 24 49-72 371-394 (582)
410 3bos_A Putative DNA replicatio 91.8 0.18 6.1E-06 43.6 5.0 23 46-68 51-73 (242)
411 1lv7_A FTSH; alpha/beta domain 91.8 0.095 3.3E-06 46.5 3.2 21 48-68 46-66 (257)
412 2dpy_A FLII, flagellum-specifi 91.7 0.1 3.4E-06 50.8 3.6 27 46-72 156-182 (438)
413 2yhs_A FTSY, cell division pro 91.7 0.092 3.1E-06 51.8 3.2 22 49-70 295-316 (503)
414 1p9r_A General secretion pathw 91.6 0.1 3.6E-06 50.4 3.5 22 49-70 169-190 (418)
415 3ake_A Cytidylate kinase; CMP 91.6 0.11 3.8E-06 44.2 3.3 24 49-72 4-27 (208)
416 3euj_A Chromosome partition pr 91.6 0.1 3.5E-06 51.3 3.5 24 49-72 31-54 (483)
417 3pfi_A Holliday junction ATP-d 91.5 0.25 8.6E-06 45.6 6.0 40 33-72 41-80 (338)
418 2og2_A Putative signal recogni 91.5 0.1 3.4E-06 49.4 3.2 22 49-70 159-180 (359)
419 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.12 4.2E-06 42.2 3.2 20 50-69 26-45 (149)
420 2yl4_A ATP-binding cassette SU 91.3 0.081 2.8E-06 53.5 2.4 24 49-72 372-395 (595)
421 2bjv_A PSP operon transcriptio 91.2 0.24 8.1E-06 44.1 5.3 24 45-68 27-50 (265)
422 2oap_1 GSPE-2, type II secreti 91.2 0.23 7.7E-06 49.3 5.5 26 46-71 259-284 (511)
423 3qf4_B Uncharacterized ABC tra 91.2 0.087 3E-06 53.3 2.6 26 48-73 382-407 (598)
424 2w58_A DNAI, primosome compone 91.1 0.12 4E-06 44.0 2.9 21 48-68 55-75 (202)
425 2dr3_A UPF0273 protein PH0284; 91.0 0.11 3.8E-06 45.3 2.8 19 49-67 25-43 (247)
426 2chg_A Replication factor C sm 91.0 0.26 8.8E-06 41.7 5.1 20 49-68 40-59 (226)
427 1q3t_A Cytidylate kinase; nucl 91.0 0.15 5E-06 44.9 3.5 26 45-70 14-39 (236)
428 1t9h_A YLOQ, probable GTPase E 91.0 0.048 1.6E-06 50.5 0.4 21 48-68 174-194 (307)
429 1njg_A DNA polymerase III subu 90.9 0.29 9.9E-06 41.9 5.4 20 49-68 47-66 (250)
430 1pzn_A RAD51, DNA repair and r 90.8 0.11 3.9E-06 48.8 2.9 23 49-71 133-155 (349)
431 1yqt_A RNAse L inhibitor; ATP- 90.8 0.12 4.1E-06 51.6 3.1 26 48-73 48-73 (538)
432 1tf7_A KAIC; homohexamer, hexa 90.8 0.11 3.8E-06 51.6 2.9 20 48-67 40-59 (525)
433 3zvl_A Bifunctional polynucleo 90.5 0.13 4.4E-06 49.6 2.9 21 48-68 259-279 (416)
434 3j16_B RLI1P; ribosome recycli 90.2 0.14 4.9E-06 51.9 3.1 24 49-72 105-128 (608)
435 3h4m_A Proteasome-activating n 90.2 0.14 4.9E-06 46.0 2.9 23 46-68 50-72 (285)
436 3ozx_A RNAse L inhibitor; ATP 90.1 0.14 4.6E-06 51.3 2.8 25 49-73 27-51 (538)
437 3b9p_A CG5977-PA, isoform A; A 90.1 0.15 5E-06 46.3 2.8 22 47-68 54-75 (297)
438 4a82_A Cystic fibrosis transme 90.1 0.085 2.9E-06 53.2 1.3 24 49-72 369-392 (578)
439 2qz4_A Paraplegin; AAA+, SPG7, 90.0 0.16 5.4E-06 44.9 2.9 21 48-68 40-60 (262)
440 3cf0_A Transitional endoplasmi 90.0 0.15 5.1E-06 46.7 2.8 26 48-73 50-75 (301)
441 1sxj_E Activator 1 40 kDa subu 89.8 0.16 5.6E-06 47.1 3.0 24 49-72 38-62 (354)
442 2ga8_A Hypothetical 39.9 kDa p 89.8 0.35 1.2E-05 45.6 5.2 22 47-68 24-45 (359)
443 2h92_A Cytidylate kinase; ross 89.7 0.23 7.7E-06 42.8 3.6 25 48-72 4-28 (219)
444 3syl_A Protein CBBX; photosynt 89.7 0.49 1.7E-05 42.8 6.1 21 48-68 68-88 (309)
445 3lda_A DNA repair protein RAD5 89.7 0.16 5.6E-06 48.7 2.9 20 49-68 180-199 (400)
446 1a7j_A Phosphoribulokinase; tr 89.6 0.11 3.8E-06 47.5 1.6 23 47-69 5-27 (290)
447 3qks_A DNA double-strand break 89.5 0.19 6.5E-06 43.3 3.0 22 50-71 26-47 (203)
448 3qf4_A ABC transporter, ATP-bi 89.5 0.11 3.9E-06 52.3 1.8 24 49-72 371-394 (587)
449 2px0_A Flagellar biosynthesis 89.5 0.19 6.7E-06 46.0 3.2 22 48-69 106-127 (296)
450 1svm_A Large T antigen; AAA+ f 89.4 0.33 1.1E-05 46.1 4.8 24 46-69 168-191 (377)
451 1hqc_A RUVB; extended AAA-ATPa 89.3 0.31 1E-05 44.5 4.4 23 46-68 37-59 (324)
452 1l8q_A Chromosomal replication 89.3 0.18 6.3E-06 46.3 2.9 21 48-68 38-58 (324)
453 3bk7_A ABC transporter ATP-bin 89.2 0.17 6E-06 51.2 2.8 25 48-72 118-142 (607)
454 3d3q_A TRNA delta(2)-isopenten 89.1 0.23 7.9E-06 46.5 3.4 22 49-70 9-30 (340)
455 1ojl_A Transcriptional regulat 89.1 0.41 1.4E-05 43.9 5.1 24 45-68 23-46 (304)
456 1um8_A ATP-dependent CLP prote 89.0 0.48 1.6E-05 44.6 5.6 25 47-71 72-96 (376)
457 1x6v_B Bifunctional 3'-phospho 88.9 0.28 9.4E-06 49.9 4.1 21 48-68 53-73 (630)
458 3gmt_A Adenylate kinase; ssgci 88.9 0.25 8.7E-06 43.6 3.4 26 46-71 7-32 (230)
459 1p5z_B DCK, deoxycytidine kina 88.8 0.13 4.4E-06 46.0 1.4 25 46-70 23-47 (263)
460 3crm_A TRNA delta(2)-isopenten 88.8 0.21 7.2E-06 46.5 2.9 22 49-70 7-28 (323)
461 2qmh_A HPR kinase/phosphorylas 88.7 0.22 7.6E-06 43.1 2.8 22 47-68 34-55 (205)
462 3bk7_A ABC transporter ATP-bin 88.7 0.22 7.5E-06 50.5 3.1 23 49-71 384-406 (607)
463 1vma_A Cell division protein F 88.7 0.24 8.3E-06 45.7 3.2 23 49-71 106-128 (306)
464 3ozx_A RNAse L inhibitor; ATP 88.7 0.2 6.8E-06 50.0 2.8 23 49-71 296-318 (538)
465 3hws_A ATP-dependent CLP prote 88.6 0.56 1.9E-05 43.9 5.7 28 47-74 51-78 (363)
466 3qf7_A RAD50; ABC-ATPase, ATPa 88.4 0.23 7.7E-06 47.0 2.9 19 50-68 26-44 (365)
467 2ocp_A DGK, deoxyguanosine kin 88.4 0.24 8.3E-06 43.5 2.9 22 48-69 3-24 (241)
468 3pxg_A Negative regulator of g 88.4 0.32 1.1E-05 47.6 4.0 23 46-68 200-222 (468)
469 2qby_A CDC6 homolog 1, cell di 88.3 0.23 7.8E-06 46.2 2.8 22 47-68 45-66 (386)
470 1yqt_A RNAse L inhibitor; ATP- 88.3 0.24 8.3E-06 49.4 3.1 23 49-71 314-336 (538)
471 1d2n_A N-ethylmaleimide-sensit 88.3 0.25 8.5E-06 44.2 2.9 22 47-68 64-85 (272)
472 3cr8_A Sulfate adenylyltranfer 88.2 0.16 5.5E-06 50.9 1.8 25 46-70 368-392 (552)
473 2qby_B CDC6 homolog 3, cell di 88.2 0.5 1.7E-05 44.1 5.2 21 48-68 46-66 (384)
474 4fcw_A Chaperone protein CLPB; 88.2 0.24 8.2E-06 45.0 2.8 20 49-68 49-68 (311)
475 3j16_B RLI1P; ribosome recycli 88.2 0.25 8.5E-06 50.1 3.1 23 50-72 381-403 (608)
476 1sxj_C Activator 1 40 kDa subu 88.2 0.5 1.7E-05 43.8 5.0 20 49-68 48-67 (340)
477 1qhl_A Protein (cell division 88.0 0.11 3.7E-06 45.9 0.3 23 50-72 30-52 (227)
478 1ofh_A ATP-dependent HSL prote 88.0 0.26 8.8E-06 44.6 2.9 22 47-68 50-71 (310)
479 1ewq_A DNA mismatch repair pro 88.0 0.26 8.9E-06 51.3 3.2 20 49-68 578-597 (765)
480 3tqf_A HPR(Ser) kinase; transf 88.0 0.28 9.5E-06 41.5 2.8 20 48-67 17-36 (181)
481 3t15_A Ribulose bisphosphate c 87.9 0.34 1.2E-05 44.1 3.7 23 48-70 37-59 (293)
482 3hr8_A Protein RECA; alpha and 87.7 0.27 9.2E-06 46.4 2.9 20 49-68 63-82 (356)
483 1w1w_A Structural maintenance 87.6 0.33 1.1E-05 46.7 3.6 25 49-73 28-52 (430)
484 4b4t_K 26S protease regulatory 87.6 0.57 1.9E-05 45.3 5.1 20 49-68 208-227 (428)
485 3a8t_A Adenylate isopentenyltr 87.5 0.29 9.8E-06 45.8 2.9 21 49-69 42-62 (339)
486 1xwi_A SKD1 protein; VPS4B, AA 87.5 0.28 9.4E-06 45.4 2.8 21 48-68 46-66 (322)
487 1wb9_A DNA mismatch repair pro 87.5 0.29 1E-05 51.2 3.3 20 49-68 609-628 (800)
488 3m6a_A ATP-dependent protease 87.5 0.25 8.6E-06 49.3 2.7 23 49-71 110-132 (543)
489 4edh_A DTMP kinase, thymidylat 87.5 0.31 1E-05 42.4 2.9 22 47-68 6-27 (213)
490 3v9p_A DTMP kinase, thymidylat 87.5 0.27 9.4E-06 43.3 2.6 24 45-68 23-46 (227)
491 4f4c_A Multidrug resistance pr 87.3 0.19 6.6E-06 55.6 1.9 26 48-73 1106-1131(1321)
492 1fnn_A CDC6P, cell division co 87.3 0.29 9.9E-06 45.7 2.9 20 49-68 46-65 (389)
493 4aby_A DNA repair protein RECN 87.2 0.14 4.7E-06 49.0 0.5 24 49-72 62-85 (415)
494 3eie_A Vacuolar protein sortin 87.2 0.3 1E-05 45.0 2.8 21 48-68 52-72 (322)
495 2r62_A Cell division protease 87.1 0.22 7.6E-06 44.3 1.8 20 49-68 46-65 (268)
496 1tf7_A KAIC; homohexamer, hexa 86.9 0.3 1E-05 48.5 2.8 23 47-69 281-303 (525)
497 3exa_A TRNA delta(2)-isopenten 86.9 0.33 1.1E-05 45.0 2.9 20 50-69 6-25 (322)
498 1e69_A Chromosome segregation 86.8 0.34 1.2E-05 44.7 3.0 24 49-72 26-49 (322)
499 2v1u_A Cell division control p 86.8 0.3 1E-05 45.5 2.7 23 46-68 43-65 (387)
500 2qen_A Walker-type ATPase; unk 86.8 0.59 2E-05 42.8 4.7 20 49-68 33-52 (350)
No 1
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=8.6e-66 Score=494.39 Aligned_cols=313 Identities=39% Similarity=0.646 Sum_probs=256.6
Q ss_pred hcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018283 22 ADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101 (358)
Q Consensus 22 ~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~ 101 (358)
++++++++|++||++|++++++.++.+||||||+|+||||||+|||+++|++||+++|+..|+++||.|++++|+.|+++
T Consensus 7 ~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~ 86 (353)
T 1cip_A 7 EDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 86 (353)
T ss_dssp ------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC-----------------------
Q 018283 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------- 158 (358)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------- 158 (358)
|+.++++.. +|+++..++.+..+....+...+++++++.|..||+||+||
T Consensus 87 ~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ 159 (353)
T 1cip_A 87 MGRLKIDFG-------DAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD 159 (353)
T ss_dssp HHHHTCCCS-------STTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHH
T ss_pred HHHhCCCCC-------CcchHHHHHHHHhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHH
Confidence 999997643 56677777777665433223578899999999999999998
Q ss_pred -----------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEcccccccc
Q 018283 159 -----------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL 227 (358)
Q Consensus 159 -----------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~ 227 (358)
+|+++++.+|+|+.+..| ..+++.+++||||||+++|++|.+||++++++|||+|+|+||+++
T Consensus 160 ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~------~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l 233 (353)
T 1cip_A 160 RIAQPNYIPTQQDVLRTRVKTTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233 (353)
T ss_dssp HHTSTTCCCCHHHHHTCCCCCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEE
T ss_pred HHhcCCCCCCccccccccCceeceEEEEE------eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccc
Confidence 789999999999999888 777899999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHH
Q 018283 228 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE 307 (358)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~ 307 (358)
.|+...+++.++..+|+.+++++++.++|++||+||+||+++|+..++++.+ ||+| .|+.+.+++.+|+..+|.
T Consensus 234 ~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~--fp~~----~g~~~~~e~~~~~~~~f~ 307 (353)
T 1cip_A 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEY----AGSNTYEEAAAYIQCQFE 307 (353)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGT--CTTC----CSCSCHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhc--cccc----CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999999999999999988888876 8888 566789999999999999
Q ss_pred HHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 308 ELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
.+.+. ...+.+++|+|||++++||+++|++|.+.|++.+++++||+
T Consensus 308 ~l~~~-----~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~l~ 353 (353)
T 1cip_A 308 DLNKR-----KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353 (353)
T ss_dssp TTCSC-----TTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred Hhhcc-----cCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 87421 12357999999999999999999999999999999999985
No 2
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=3e-65 Score=496.04 Aligned_cols=333 Identities=30% Similarity=0.494 Sum_probs=256.2
Q ss_pred hcccccCCCC-CChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHH---------
Q 018283 9 MGLLCSKNRR-YNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA--------- 78 (358)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~--------- 78 (358)
||||||+... ...++++++++|++||++|++++++.++++|+||||+|+||||||+|||+++|++||+++
T Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~ 80 (402)
T 1azs_C 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA 80 (402)
T ss_dssp -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------
T ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHH
Confidence 9998776322 123567889999999999999999999999999999999999999999999999999986
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhh
Q 018283 79 ------ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152 (358)
Q Consensus 79 ------e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw 152 (358)
|+..|++.|+.|++++|+.|+++|..+.++. .+.+|+++..++.+..+.... ...|++++++.|..||
T Consensus 81 ~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lW 154 (402)
T 1azs_C 81 RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV-----ELANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALW 154 (402)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC-----CCSSGGGHHHHHHHHHTTTCS-SCCCCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccCCchhHHHHHHHHhhcccC-CCCCCHHHHHHHHHHH
Confidence 5567999999999999999999999987421 134677877788877765332 2468999999999999
Q ss_pred cCCCCC----------------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCc
Q 018283 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR 198 (358)
Q Consensus 153 ~d~~i~----------------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~ 198 (358)
+||+|| +|+++++.+|+|+.+..| ..+++.|+|||||||+
T Consensus 155 ~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~------~~~~v~l~iwDtaGQe 228 (402)
T 1azs_C 155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQR 228 (402)
T ss_dssp HCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEE------EETTEEEEEEEECCSG
T ss_pred cCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEe------ecCCccceecccchhh
Confidence 999998 789999999999999888 6778999999999999
Q ss_pred hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhc--cCCC
Q 018283 199 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL--KVPL 276 (358)
Q Consensus 199 ~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~--~~~l 276 (358)
++|++|.+||++++++|||+|+|+||+++.|+.+.+++.++..||+.+++++++.++|++||+||+||+++|+. .+++
T Consensus 229 ~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l 308 (402)
T 1azs_C 229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKI 308 (402)
T ss_dssp GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCG
T ss_pred hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999884 3466
Q ss_pred cccccccccccCC--------CCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 277 NVCEWFKDYQPVS--------TGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 277 ~~~~~f~~y~~~~--------~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
.. |||+|.+-. .|+ .+.++|..|+..+|..+++.... ..+.+++|+|||+|++||+.+|.+|.+.|
T Consensus 309 ~~--~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~---~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 309 ED--YFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGD---GRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp GG--TCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCT---TSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hh--ccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccc---cCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 54 599995311 132 24789999999999887643211 23568999999999999999999999999
Q ss_pred HHhhhhhcCCC
Q 018283 348 RRRHLFEAGLL 358 (358)
Q Consensus 348 ~~~~~~~~~l~ 358 (358)
++.+++.+||+
T Consensus 384 ~~~~l~~~~~~ 394 (402)
T 1azs_C 384 QRMHLRQYELL 394 (402)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhcCc
Confidence 99999999986
No 3
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=2e-65 Score=485.49 Aligned_cols=290 Identities=35% Similarity=0.618 Sum_probs=262.3
Q ss_pred HhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchH
Q 018283 43 AEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENK 122 (358)
Q Consensus 43 ~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 122 (358)
+.++++|+||||+|+||||||+|||+++|++||+++|+..|+++||.|++++|+.|+++|+.|+++.. +|+++
T Consensus 3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~-------~~~~~ 75 (327)
T 3ohm_A 3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYK-------YEHNK 75 (327)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------STHHH
T ss_pred hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCC-------CchhH
Confidence 45689999999999999999999999999999999999999999999999999999999999998743 78888
Q ss_pred HHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeecc
Q 018283 123 EIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRT 168 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T 168 (358)
..++.+.+++... ...+++++++.|.+||+||+|| +|+++++.||
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~T 154 (327)
T 3ohm_A 76 AHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 154 (327)
T ss_dssp HHHHHHHTCCGGG-CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCC
T ss_pred HHHHHHhcccccc-cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCce
Confidence 8888888765543 3568999999999999999999 8999999999
Q ss_pred CceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc
Q 018283 169 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248 (358)
Q Consensus 169 ~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~ 248 (358)
+|+.+..| ..+++++++||||||+++|++|.+||++++++|||+|+|+||+++.++++.+++.+++.+|+++++
T Consensus 155 iGi~~~~~------~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 155 TGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred eeEEEEEE------EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEE
Q 018283 249 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR 327 (358)
Q Consensus 249 ~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~ 327 (358)
++++.++|++||+||+||+++|+..+|+.. |||+| +|+ .+.++|.+||.++|.++++ + ..+.+++|+
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~--~fp~y----~g~~~~~e~a~~fi~~~F~~~~~---~---~~~~i~~~~ 296 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVD--YFPEY----DGPQRDAQAAREFILKMFVDLNP---D---SDKIIYSHF 296 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHHHTTTSCGGG--TCTTC----CSCSSCHHHHHHHHHHHHHSSCT---T---TTSCEEEEE
T ss_pred hhccCCceEEEEEECchhhhhhhccchHhh--hchhc----cCCCCCHHHHHHHHHHHHHhhcc---c---ccCCcEEEE
Confidence 999999999999999999999998888765 59999 564 6899999999999998742 1 246799999
Q ss_pred eeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 328 TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 328 tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
|||+|++||+.+|..|++.|++.+|+++||+
T Consensus 297 TsA~d~~nV~~vF~~v~~~Il~~~l~~~~l~ 327 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDTILQLNLKEYNLV 327 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred EEeecCHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 9999999999999999999999999999985
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=3.5e-64 Score=484.72 Aligned_cols=318 Identities=31% Similarity=0.534 Sum_probs=249.1
Q ss_pred hcccccCCCCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018283 9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH 88 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~ 88 (358)
||||++. ++++++++|++||++|++++++.++..||||||.+|||||||+|||+++|.+||+++|+..|++.|+
T Consensus 1 mgc~~~~------~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~ 74 (362)
T 1zcb_A 1 MGCTLSA------EDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIY 74 (362)
T ss_dssp ------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHH
T ss_pred CCCCCCH------HHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHH
Confidence 8974432 4677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCC--------CCCccCcHHHHHHHHHhhcCCCCC--
Q 018283 89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR--------LDYPRLTKELAEDIETLWADPAIQ-- 158 (358)
Q Consensus 89 ~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~lw~d~~i~-- 158 (358)
.|++++|+.|+++|+.++++.. +|+++..++.+...... .+...| +++++.|..||+||+||
T Consensus 75 ~n~~~s~~~il~a~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~ 146 (362)
T 1zcb_A 75 SNVIKGMRVLVDAREKLHIPWG-------DNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNA 146 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS-------SGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-------CcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHH
Confidence 9999999999999999987643 56777777777765442 122456 99999999999999998
Q ss_pred --------------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhh
Q 018283 159 --------------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206 (358)
Q Consensus 159 --------------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~ 206 (358)
+|+++++.+|+|+.+..| ..+++.+++||||||+++|++|.+
T Consensus 147 ~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~------~~~~~~l~i~Dt~Gq~~~r~~w~~ 220 (362)
T 1zcb_A 147 YDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFE 220 (362)
T ss_dssp HHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEE------EETTEEEEEEEECC-------CTT
T ss_pred HHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEe------eeCCeEEEEEeccchhhhhhhHHH
Confidence 889999999999999888 777899999999999999999999
Q ss_pred hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccc
Q 018283 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ 286 (358)
Q Consensus 207 y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~ 286 (358)
||++++++|||+|+|+||+++.|+.+.+++.++..+|..+++++++.++|++||+||+||+++|+..+++..+ ||+|
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~--fp~y- 297 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDY--FLEF- 297 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGT--CTTC-
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhc--Cccc-
Confidence 9999999999999999999999999999999999999999999888999999999999999999988888776 9988
Q ss_pred cCCCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 287 PVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 287 ~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
+|. .+.+++.+|+..+|..+.+. + ..+.+++|+|||+|++||+++|++|.+.|++.+|++ ||+
T Consensus 298 ---~g~~~~~~e~~~~~~~~f~~l~~~---~--~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~~-~l~ 361 (362)
T 1zcb_A 298 ---EGDPHCLRDVQKFLVECFRGKRRD---Q--QQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQ-LML 361 (362)
T ss_dssp ---CSCTTCHHHHHHHHHHHHHTTCSS---C--C--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ---cCCCCCHHHHHHHHHHHHHHhhcc---c--CCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHHh-hcc
Confidence 564 67899999999999987421 0 135689999999999999999999999999999999 985
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=6e-63 Score=470.08 Aligned_cols=289 Identities=33% Similarity=0.549 Sum_probs=252.7
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 124 (358)
++++|+||||+|+||||||+||||++|++||+++|+..|+++||.|++++|+.|+++|+.|+++.. +|+++..
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~-------~~~~~~~ 75 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMK-------YQPKSKE 75 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------CCCCSGG
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC-------ChhhHHH
Confidence 478999999999999999999999999999999999999999999999999999999999998754 3443332
Q ss_pred HHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeeccCc
Q 018283 125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRTTG 170 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T~g 170 (358)
+ .+.. ...+.+++++++.|.+||+||+|| +|+++++.+|+|
T Consensus 76 ~---~~~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiG 150 (340)
T 4fid_A 76 F---TTED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTG 150 (340)
T ss_dssp G---SCCS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCS
T ss_pred H---hhcc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceee
Confidence 2 2222 234679999999999999999998 899999999999
Q ss_pred eeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 171 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 171 i~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
+.+..| ..+++++++||||||+++|++|.+||++++++|||+|+|+||+++.++.+.+++.+++.+|+.+++++
T Consensus 151 i~~~~~------~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 151 IHEYDF------VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CEEEEE------ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred eEEEEE------EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 999999 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHH------HHHhhhcCC--CC---CC
Q 018283 251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF------EELYFQSTA--PD---RV 319 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f------~~~~~~~~~--~~---~~ 319 (358)
++.++|++||+||+||+++|+..+++..+ ||+| +|+.++++|.+||..+| .++.+.... ++ ..
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~--fp~y----~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 298 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTI--FPEY----TGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAV 298 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGT--CTTC----CCTTCHHHHHHHHHHHHHTTSEEEESCC-------------
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHh--hhhh----cCCCCHHHHHHHHHHhcccccchhhhhcccccccccccccc
Confidence 99999999999999999999988888766 8888 56678999999999999 555321110 00 01
Q ss_pred CceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 320 ~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
.+.+++|+|||+|+.||+.+|..|++.|++ +|+++||+
T Consensus 299 ~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~-~l~~~~~~ 336 (340)
T 4fid_A 299 NEKVYTNPTNATDGSNIKRVFMLAVDVIMK-NMAANGKM 336 (340)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred CcceEEEEEEeeCcHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 267999999999999999999999999999 99999985
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-61 Score=464.84 Aligned_cols=314 Identities=90% Similarity=1.365 Sum_probs=272.9
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 124 (358)
.+++||||||.|||||||++|||+++|.+||+++|+..|++.|+.|++++|+.|+++|+.+.++......+.++|+++..
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~ 86 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAI 86 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHH
T ss_pred CCceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999998766555566678888887
Q ss_pred HHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeeccCc
Q 018283 125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRTTG 170 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T~g 170 (358)
+..+..+....+.+.+++++++.|..||+||+|| +|+++++.+|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~G 166 (354)
T 2xtz_A 87 GEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTG 166 (354)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCS
T ss_pred HHHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeecccccc
Confidence 7777766544456789999999999999999998 889999999999
Q ss_pred eeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 171 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 171 i~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
+.++.|.+.+.+..+.+.+++||||||+++|++|.+||++++++|||+|+|+|||++.++.+.+++.++..||+.+++++
T Consensus 167 i~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~ 246 (354)
T 2xtz_A 167 VVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246 (354)
T ss_dssp EEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG
T ss_pred eeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc
Confidence 99999833210011679999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283 251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 330 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA 330 (358)
++.++|++||+||+||+++|+..+++..++|||+|.|...|+.+.++|.+|+.++|..++++++.+....+.+++|+|||
T Consensus 247 ~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA 326 (354)
T 2xtz_A 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTA 326 (354)
T ss_dssp GGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCT
T ss_pred ccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEe
Confidence 88899999999999999999887899999999999877777677899999999999988654443322235688899999
Q ss_pred cChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283 331 LDPKLVKKTFKLVDETLRRRHLFEAGLL 358 (358)
Q Consensus 331 ~d~~ni~~vf~~i~~~i~~~~~~~~~l~ 358 (358)
+|++||+++|++|.+.|++.+|+++||+
T Consensus 327 ~d~~nV~~vF~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 327 LDQKLVKKTFKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999985
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.94 E-value=1.3e-26 Score=207.87 Aligned_cols=119 Identities=22% Similarity=0.177 Sum_probs=94.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.++||||+||++|+.++..||++++++|+|+|+ ++.+++.....|+..+... ..+++|++||||
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di----------~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgN 126 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDI----------TNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGN 126 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeec----------chhHHHHHHHHHHHHHHHh-cCCCCeEEEEee
Confidence 66779999999999999999999999999999999998 4667777777777776543 235789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+||.+++. ...+++.+|... ..+.+++|||++++||+++|+.
T Consensus 127 K~Dl~~~r~---------------------V~~~e~~~~a~~----------------~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 127 KTDLADKRQ---------------------VSIEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEEBTTTTBSHHHHHHH
T ss_pred ccchHhcCc---------------------ccHHHHhhHHHH----------------hCCeeEEEeCCCCcCHHHHHHH
Confidence 999976542 334555554221 1256889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
|++.|..
T Consensus 170 i~~~i~~ 176 (216)
T 4dkx_A 170 VAAALPG 176 (216)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9988864
No 8
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=1.5e-23 Score=181.86 Aligned_cols=134 Identities=24% Similarity=0.352 Sum_probs=99.8
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ ...++.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..
T Consensus 45 ~~t~g~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~ 108 (181)
T 1fzq_A 45 TPTQGFNIKSV------QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSA----------DRKRFEETGQELTE 108 (181)
T ss_dssp EEETTEEEEEE------EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred cCcCCeEEEEE------EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHHHHHHHHH
Confidence 56777655445 445789999999999999999999999999999999983 55678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......++|+++++||+|+.++. ..++..+.+. +. .. ..+.+.+
T Consensus 109 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~~~-----~~---~~---~~~~~~~ 154 (181)
T 1fzq_A 109 LLEEEKLSCVPVLIFANKQDLLTAA-----------------------PASEIAEGLN-----LH---TI---RDRVWQI 154 (181)
T ss_dssp HTTCGGGTTCCEEEEEECTTSTTCC-----------------------CHHHHHHHTT-----GG---GC---CSSCEEE
T ss_pred HHhChhhcCCCEEEEEECcCcccCC-----------------------CHHHHHHHhC-----ch---hc---cCCceEE
Confidence 8765555689999999999986431 1122221110 00 01 1345778
Q ss_pred EEeeccChhhHHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
++|||++++||+++|+++.+.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC--
T ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=2e-23 Score=176.78 Aligned_cols=134 Identities=20% Similarity=0.307 Sum_probs=99.7
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|.....+ ...++.+.+||++|++.++..|..|+++++++|+|+|++ +.+++.....++..
T Consensus 29 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~ 92 (164)
T 1r8s_A 29 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVNEAREELMR 92 (164)
T ss_dssp CCCSSCCEEEE------ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred cCcCceeEEEE------EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 35666555555 567789999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.......+.|++||+||+|+.++. ...+..+. +... .. ..+.+.+
T Consensus 93 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~----~~~~----~~---~~~~~~~ 138 (164)
T 1r8s_A 93 MLAEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITDK----LGLH----SL---RHRNWYI 138 (164)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGG----GC---SSCCEEE
T ss_pred HHhchhhcCCeEEEEEECcCCcCCC-----------------------CHHHHHHH----hCcc----cc---cCccEEE
Confidence 8776556789999999999995421 11111111 1000 00 1245778
Q ss_pred EEeeccChhhHHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
+++||+++.||+++|+++.+.+.+
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEcccCCCcCHHHHHHHHHHHHhh
Confidence 899999999999999999988754
No 10
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.90 E-value=2.5e-23 Score=177.24 Aligned_cols=134 Identities=19% Similarity=0.301 Sum_probs=101.3
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ ......+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...++..
T Consensus 36 ~~t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~ 99 (171)
T 1upt_A 36 IPTIGFNVETV------TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC----------DRDRIGISKSELVA 99 (171)
T ss_dssp CCCSSEEEEEE------EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT----------CCTTHHHHHHHHHH
T ss_pred CCcCccceEEE------EECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 45667665555 556789999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......+.|+++|+||+|+..+. ...+..+.+... . . ..+.+.+
T Consensus 100 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~~~~~---~-----~---~~~~~~~ 145 (171)
T 1upt_A 100 MLEEEELRKAILVVFANKQDMEQAM-----------------------TSSEMANSLGLP---A-----L---KDRKWQI 145 (171)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHHTGG---G-----C---TTSCEEE
T ss_pred HHhchhhCCCEEEEEEECCCCcCCC-----------------------CHHHHHHHhCch---h-----c---cCCceEE
Confidence 8876555689999999999996431 112211111100 0 1 1345788
Q ss_pred EEeeccChhhHHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
+++||++++||+++|+++.+.+.+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 146 FKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EECcCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=1.1e-22 Score=177.75 Aligned_cols=137 Identities=26% Similarity=0.395 Sum_probs=103.9
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+....+ +...+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.+...++..
T Consensus 48 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~ 111 (199)
T 4bas_A 48 TATVGYNVETF------EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSS----------DHLRLCVVKSEIQA 111 (199)
T ss_dssp CCCSSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred ccccceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC----------cHHHHHHHHHHHHH
Confidence 46777766666 678899999999999999999999999999999999984 55678788888888
Q ss_pred HHcCCCC-------CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCC
Q 018283 246 VLKQPCF-------EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDR 318 (358)
Q Consensus 246 i~~~~~~-------~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~ 318 (358)
++..... .++|++||+||+|+..+. ..++..+.+...+. .
T Consensus 112 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~~~~~~~--~-------- 158 (199)
T 4bas_A 112 MLKHEDIRRELPGGGRVPFLFFANKMDAAGAK-----------------------TAAELVEILDLTTL--M-------- 158 (199)
T ss_dssp HHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC-----------------------CHHHHHHHHTHHHH--H--------
T ss_pred HHhChhhhhcccccCCCCEEEEEECcCCCCCC-----------------------CHHHHHHHhcchhh--c--------
Confidence 8765222 378999999999996531 12222222221111 0
Q ss_pred CCceEEEEEeeccChhhHHHHHHHHHHHHHHhh
Q 018283 319 VDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 351 (358)
Q Consensus 319 ~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~ 351 (358)
....+.+++|||++++||+++|+++.+.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 124578899999999999999999999987654
No 12
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.89 E-value=6.6e-23 Score=179.58 Aligned_cols=133 Identities=18% Similarity=0.300 Sum_probs=96.0
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ ....+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....++..
T Consensus 58 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~l~~ 121 (192)
T 2b6h_A 58 IPTIGFNVETV------EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVQESADELQK 121 (192)
T ss_dssp EEETTEEEEEE------EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred CCcCceeEEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 46777665556 567799999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.......++|++||+||+|+.++. ..++..+. +.... . ..+.+.+
T Consensus 122 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~----~~~~~----~---~~~~~~~ 167 (192)
T 2b6h_A 122 MLQEDELRDAVLLVFANKQDMPNAM-----------------------PVSELTDK----LGLQH----L---RSRTWYV 167 (192)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGGG----C---SSCCEEE
T ss_pred HhcccccCCCeEEEEEECCCCCCCC-----------------------CHHHHHHH----hCccc----c---cCCceEE
Confidence 8776556689999999999995431 11111111 10000 0 1245778
Q ss_pred EEeeccChhhHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
+++||+++.||+++|+++.+.+.
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 13
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=7.4e-23 Score=178.04 Aligned_cols=136 Identities=21% Similarity=0.322 Sum_probs=102.9
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|+....+ ....+.+.+|||+|++.++..|..|+++++++|+|+|++ +.+++.+...++..
T Consensus 51 ~~t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~ 114 (189)
T 2x77_A 51 VPTVGVNLETL------QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST----------DRDRMGVAKHELYA 114 (189)
T ss_dssp CSSTTCCEEEE------EETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETT----------CCTTHHHHHHHHHH
T ss_pred CCCCceEEEEE------EECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHH
Confidence 45666655555 556789999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......+.|+++|+||+|+..+. ..++..+.+.. .. . ..+.+.+
T Consensus 115 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~~~~---~~-----~---~~~~~~~ 160 (189)
T 2x77_A 115 LLDEDELRKSLLLIFANKQDLPDAA-----------------------SEAEIAEQLGV---SS-----I---MNRTWTI 160 (189)
T ss_dssp HHTCSTTTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHTTG---GG-----C---CSSCEEE
T ss_pred HHhhhhcCCCeEEEEEECCCCcCCC-----------------------CHHHHHHHhCh---hh-----c---cCCceEE
Confidence 8877666789999999999996431 11111111100 00 1 1345788
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHhh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRRH 351 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~~ 351 (358)
+++||++++||+++|+++.+.+.+..
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred EEccCCCccCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999887653
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=7.6e-23 Score=180.17 Aligned_cols=130 Identities=18% Similarity=0.324 Sum_probs=88.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...++.+.+|||+|++.++..|..||++++++|+|+|+ ++..++.+...++..+.......++|+++|+|
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 134 (198)
T 1f6b_A 65 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC----------ADHERLLESKEELDSLMTDETIANVPILILGN 134 (198)
T ss_dssp EETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred EECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEE
Confidence 34458999999999999999999999999999999998 35677888888888887765556899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcC--CCCCCCceEEEEEeeccChhhHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST--APDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~--~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
|+|+.++ ...+++.+++....... .... -.....+.+.+++|||++++||+++|
T Consensus 135 K~Dl~~~-----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 135 KIDRPEA-----------------------ISEERLREMFGLYGQTT-GKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp CTTSTTC-----------------------CCHHHHHHHHTCTTTCC-CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred CCCcccc-----------------------CCHHHHHHHhCcccccc-cccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 9999641 11222222211100000 0000 00001245788999999999999999
Q ss_pred HHHHHH
Q 018283 341 KLVDET 346 (358)
Q Consensus 341 ~~i~~~ 346 (358)
+++.+.
T Consensus 191 ~~l~~~ 196 (198)
T 1f6b_A 191 RWMAQY 196 (198)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998754
No 15
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2e-22 Score=175.09 Aligned_cols=133 Identities=20% Similarity=0.307 Sum_probs=96.6
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+....+ ..+++.+.+|||+|++.++..|..|+++++++|+|+|++ +.+++.+...++..
T Consensus 45 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~ 108 (187)
T 1zj6_A 45 SPTIGSNVEEI------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYK 108 (187)
T ss_dssp ECCSCSSCEEE------EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETT----------CTTTHHHHHHHHHH
T ss_pred cCCCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHH
Confidence 46666555555 456799999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.......+.|+++|+||+|+.++ ...++..+++... .+ ....+.+
T Consensus 109 ~~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~i~~~~~~~---~~--------~~~~~~~ 154 (187)
T 1zj6_A 109 MLAHEDLRKAGLLIFANKQDVKEC-----------------------MTVAEISQFLKLT---SI--------KDHQWHI 154 (187)
T ss_dssp HHTSGGGTTCEEEEEEECTTSTTC-----------------------CCHHHHHHHHTGG---GC--------CSSCEEE
T ss_pred HHhchhhCCCeEEEEEECCCCcCC-----------------------CCHHHHHHHhChh---hh--------cCCCcEE
Confidence 877644568999999999999642 1122222221110 00 1345788
Q ss_pred EEeeccChhhHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
+++||++++||+++|+++.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 16
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=4.3e-22 Score=171.79 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=97.8
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+....+ ...+..+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...++..
T Consensus 47 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~ 110 (183)
T 1moz_A 47 KPTIGFNVETL------SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST----------DKDRMSTASKELHL 110 (183)
T ss_dssp CSSTTCCEEEE------EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETT----------CTTTHHHHHHHHHH
T ss_pred CCcCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 46666555455 445689999999999999999999999999999999984 45778888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.......++|+++|+||+|+.++ ...++..+++. . ... ..+.+.+
T Consensus 111 ~~~~~~~~~~piilv~nK~Dl~~~-----------------------~~~~~i~~~~~-----~---~~~---~~~~~~~ 156 (183)
T 1moz_A 111 MLQEEELQDAALLVFANKQDQPGA-----------------------LSASEVSKELN-----L---VEL---KDRSWSI 156 (183)
T ss_dssp HTTSSTTSSCEEEEEEECTTSTTC-----------------------CCHHHHHHHTT-----T---TTC---CSSCEEE
T ss_pred HHcChhhCCCeEEEEEECCCCCCC-----------------------CCHHHHHHHhC-----c---ccc---cCCceEE
Confidence 877655568999999999998642 11122222111 0 000 1345778
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
+++||++++||+++|+++.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988754
No 17
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.89 E-value=2.1e-22 Score=174.53 Aligned_cols=135 Identities=18% Similarity=0.297 Sum_probs=102.4
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.|.....+ ...+..+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..
T Consensus 47 ~~t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~ 110 (186)
T 1ksh_A 47 SPTLGFNIKTL------EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DRQRMQDCQRELQS 110 (186)
T ss_dssp CCCSSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred cccCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHH
Confidence 46667665555 456789999999999999999999999999999999984 55678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......+.|+++|+||+|+..+. ..++..+++.. .. . ....+.+
T Consensus 111 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~~~~---~~-----~---~~~~~~~ 156 (186)
T 1ksh_A 111 LLVEERLAGATLLIFANKQDLPGAL-----------------------SCNAIQEALEL---DS-----I---RSHHWRI 156 (186)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHTTG---GG-----C---CSSCEEE
T ss_pred HHhChhcCCCcEEEEEeCccCCCCC-----------------------CHHHHHHHhCh---hh-----c---cCCceEE
Confidence 8876555689999999999996431 11222221110 00 0 1345788
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
+++||++++||+++|+++.+.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=177.68 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=91.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..++|++||+|
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~N 142 (201)
T 2hup_A 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT----------KRSSFLSVPHWIEDVRKYA-GSNIVQLLIGN 142 (201)
T ss_dssp TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETT----------BHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 445689999999999999999999999999999999984 4455666666666665432 35789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf~ 341 (358)
|+|+..++. ...+++.++... ..+ .+++|||++++||+++|+
T Consensus 143 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 143 KSDLSELRE---------------------VSLAEAQSLAEH----------------YDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCSEEEECBTTTTBSHHHHHH
T ss_pred CCccccccc---------------------cCHHHHHHHHHH----------------cCCCEEEEEeCCCCCCHHHHHH
Confidence 999975421 223444443211 124 678999999999999999
Q ss_pred HHHHHHHHhh
Q 018283 342 LVDETLRRRH 351 (358)
Q Consensus 342 ~i~~~i~~~~ 351 (358)
++.+.+.+..
T Consensus 186 ~l~~~i~~~~ 195 (201)
T 2hup_A 186 RVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999997653
No 19
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=2.9e-22 Score=175.17 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=96.0
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
+|.|.....+ ...++.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..+
T Consensus 53 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~ 116 (190)
T 1m2o_B 53 PTWHPTSEEL------AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA----------DPERFDEARVELDAL 116 (190)
T ss_dssp CCCSCEEEEE------EETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETT----------CGGGHHHHHHHHHHH
T ss_pred cCCCCCeEEE------EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC----------ChHHHHHHHHHHHHH
Confidence 4555544444 445689999999999999999999999999999999984 566788888888888
Q ss_pred HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~ 326 (358)
.......+.|+++++||+|+.++ ...+++.+++.... ....+.-...+.+.++
T Consensus 117 ~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 169 (190)
T 1m2o_B 117 FNIAELKDVPFVILGNKIDAPNA-----------------------VSEAELRSALGLLN----TTGSQRIEGQRPVEVF 169 (190)
T ss_dssp HTCGGGTTCCEEEEEECTTSTTC-----------------------CCHHHHHHHTTCSS----CCC---CCSSCCEEEE
T ss_pred HcchhhcCCCEEEEEECCCCcCC-----------------------CCHHHHHHHhCCcc----ccccccccccceEEEE
Confidence 77655568999999999999641 11122221110000 0000000012457789
Q ss_pred EeeccChhhHHHHHHHHHHH
Q 018283 327 RTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 327 ~tSA~d~~ni~~vf~~i~~~ 346 (358)
++||++++||+++|+++.+.
T Consensus 170 ~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 170 MCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EeECCcCCCHHHHHHHHHhh
Confidence 99999999999999998753
No 20
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.89 E-value=1.7e-22 Score=174.79 Aligned_cols=131 Identities=20% Similarity=0.294 Sum_probs=97.7
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+....+ ..+++.+.+||++|++.++..|..|+++++++|||+|++ +..++.+...++..
T Consensus 50 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~ 113 (181)
T 2h17_A 50 SPTIGSNVEEI------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYK 113 (181)
T ss_dssp ECCSSSSCEEE------EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETT----------CTTTHHHHHHHHHH
T ss_pred CCcCceeeEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 45666555455 456689999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.......+.|+++|+||+|+..+ ...++..+++... . . ....+.+
T Consensus 114 ~~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~i~~~~~~~---~-----~---~~~~~~~ 159 (181)
T 2h17_A 114 MLAHEDLRKAGLLIFANKQDVKEC-----------------------MTVAEISQFLKLT---S-----I---KDHQWHI 159 (181)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTC-----------------------CCHHHHHHHTTGG---G-----C---CSSCEEE
T ss_pred HHhChhhCCCeEEEEEECCCcccC-----------------------CCHHHHHHHhCcc---c-----c---cCCceEE
Confidence 877544568999999999999642 1112222221100 0 0 1345788
Q ss_pred EEeeccChhhHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~ 346 (358)
+++||++++||+++|+++.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 999999999999999998754
No 21
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=5.6e-22 Score=172.71 Aligned_cols=133 Identities=23% Similarity=0.419 Sum_probs=100.1
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+....+ ...++.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..
T Consensus 52 ~~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~ 115 (190)
T 2h57_A 52 LPTIGFSIEKF------KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS----------DRLRMVVAKEELDT 115 (190)
T ss_dssp CCCSSEEEEEE------ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETT----------CHHHHHHHHHHHHH
T ss_pred CCccceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 35667665555 555689999999999999999999999999999999983 45677788888888
Q ss_pred HHcCCCC--CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283 246 VLKQPCF--EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 323 (358)
Q Consensus 246 i~~~~~~--~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~ 323 (358)
+...... .++|+++|+||+|+.++ ...++..+++.. ..+ ..+.+
T Consensus 116 ~~~~~~~~~~~~piilv~nK~Dl~~~-----------------------~~~~~~~~~~~~--~~~---------~~~~~ 161 (190)
T 2h57_A 116 LLNHPDIKHRRIPILFFANKMDLRDA-----------------------VTSVKVSQLLCL--ENI---------KDKPW 161 (190)
T ss_dssp HHHSTTTTTSCCCEEEEEECTTSTTC-----------------------CCHHHHHHHHTG--GGC---------CSSCE
T ss_pred HHhChhhccCCCeEEEEEeCcCcccC-----------------------CCHHHHHHHhCh--hhc---------cCCce
Confidence 8776554 67899999999999642 112333332210 000 12457
Q ss_pred EEEEeeccChhhHHHHHHHHHHHHH
Q 018283 324 KIYRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 324 ~~~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
.++++||++++||+++|+++.+.+.
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHH
Confidence 8899999999999999999988764
No 22
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=3.2e-22 Score=174.25 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=99.9
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|.....+ ....+.+.+||++|++.++..|..|+++++++|||+|++ +..++.....++..
T Consensus 52 ~~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~ 115 (188)
T 1zd9_A 52 IPTVGFNMRKI------TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA----------DQEKIEASKNELHN 115 (188)
T ss_dssp CCCCSEEEEEE------EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred CCCCceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 35666665556 667899999999999999999999999999999999984 45678888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......+.|++||+||+|+..+. ...+..+. +.... . ....+.+
T Consensus 116 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~----~~~~~----~---~~~~~~~ 161 (188)
T 1zd9_A 116 LLDKPQLQGIPVLVLGNKRDLPGAL-----------------------DEKELIEK----MNLSA----I---QDREICC 161 (188)
T ss_dssp HHTCGGGTTCCEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGGG----C---CSSCEEE
T ss_pred HHhCcccCCCCEEEEEECCCCccCC-----------------------CHHHHHHH----hChhh----h---ccCCeeE
Confidence 8776545689999999999996421 11111111 10000 0 1234678
Q ss_pred EEeeccChhhHHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
+++||+++.||+++|+++.+.+.+
T Consensus 162 ~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999887643
No 23
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=5.7e-22 Score=172.62 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=92.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++... ..+...+.....|+..+. ....++|++||+|
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~----~~~~~s~~~l~~~l~~~~--~~~~~~piilv~N 143 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL----RANAESMRNMRENLAEYG--LTLDDVPIVIQVN 143 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH----HHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEE
T ss_pred cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh----hHhHHHHHHHHHHHHhhc--cccCCCCEEEEEE
Confidence 5567899999999999999999999999999999999852100 013455666666666652 3346899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf~ 341 (358)
|+|+.++ ...+++.++.. ...+ .++++||++++||+++|+
T Consensus 144 K~Dl~~~-----------------------~~~~~~~~~~~----------------~~~~~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 144 KRDLPDA-----------------------LPVEMVRAVVD----------------PEGKFPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp CTTSTTC-----------------------CCHHHHHHHHC----------------TTCCSCEEECBGGGTBTHHHHHH
T ss_pred chhcccc-----------------------cCHHHHHHHHH----------------hcCCceEEEEecCCCcCHHHHHH
Confidence 9998543 22344443311 1234 678999999999999999
Q ss_pred HHHHHHHHhh
Q 018283 342 LVDETLRRRH 351 (358)
Q Consensus 342 ~i~~~i~~~~ 351 (358)
++.+.+++..
T Consensus 185 ~l~~~i~~~~ 194 (198)
T 3t1o_A 185 EVSRLVLARV 194 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 24
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.88 E-value=4.1e-22 Score=172.05 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=79.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...++|++||+|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n 121 (183)
T 2fu5_C 53 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT----------NEKSFDNIRNWIRNIEEH-ASADVEKMILGN 121 (183)
T ss_dssp TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 455689999999999999999999999999999999984 345666666666666542 224789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.+++|||++++||+++|++
T Consensus 122 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 122 KCDVNDKRQ---------------------VSKERGEKLALD----------------YGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp C--CCSCCC---------------------SCHHHHHHHHHH----------------HTCEEEECCC---CCHHHHHHH
T ss_pred CccCCccCc---------------------CCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999964321 223444443211 1256889999999999999999
Q ss_pred HHHHHHHhhhh
Q 018283 343 VDETLRRRHLF 353 (358)
Q Consensus 343 i~~~i~~~~~~ 353 (358)
+.+.+.+...+
T Consensus 165 l~~~i~~~~~~ 175 (183)
T 2fu5_C 165 LARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999876544
No 25
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=1.4e-21 Score=165.78 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=78.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|+++|+|
T Consensus 45 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 45 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT----------DKGSFEKASELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp TTEEEEEEEEECC---------------CCEEEEEEETT----------CHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 667789999999999999999999999999999999984 5567778888888887665556899999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. ...+.++++||++++||+++|++
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 115 KSDLVRSRE---------------------VSVDEGRACAV----------------VFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp CTTCCSSCC---------------------SCHHHHHHHHH----------------HTTCEEEECBGGGTBSHHHHHHH
T ss_pred ccccccccc---------------------cCHHHHHHHHH----------------HhCCcEEEeccCCCCCHHHHHHH
Confidence 999864321 22233333211 11256889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+...
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988653
No 26
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.87 E-value=1e-21 Score=171.36 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=91.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..+.|++||+|
T Consensus 66 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~l~~i~~~~-~~~~piilv~n 134 (191)
T 2a5j_A 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTSWLEDARQHS-SSNMVIMLIGN 134 (191)
T ss_dssp TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 556689999999999999999999999999999999984 3455555566666664422 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++++||++++||+++|++
T Consensus 135 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 135 KSDLESRRD---------------------VKREEGEAFARE----------------HGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred CcccCCccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965421 123344433211 1256789999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+.++.
T Consensus 178 l~~~i~~~~ 186 (191)
T 2a5j_A 178 TAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998654
No 27
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=173.65 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=91.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..++|++||+|
T Consensus 70 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n 138 (200)
T 2o52_A 70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------SRETYNSLAAWLTDARTLA-SPNIVVILCGN 138 (200)
T ss_dssp TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHT-CTTCEEEEEEE
T ss_pred CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 455689999999999999999999999999999999984 3455555566666654322 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....++..+... ..+.++++||++++||+++|++
T Consensus 139 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 139 KKDLDPERE---------------------VTFLEASRFAQE----------------NELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHH
T ss_pred CCCcccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965421 223444443211 2257889999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+++..
T Consensus 182 l~~~i~~~~ 190 (200)
T 2o52_A 182 CARTILNKI 190 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988643
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=1.7e-21 Score=167.03 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=85.1
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCc-EEEEee
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTS-FMLFLN 262 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~-iilv~N 262 (358)
..+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+... +...+.| ++||+|
T Consensus 54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT----------NYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp EEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred CEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 4589999999999999999999999999999999985 333444444444443321 0011344 899999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++++||++++||+++|++
T Consensus 124 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 166 (178)
T 2hxs_A 124 KIDLEHMRT---------------------IKPEKHLRFCQE----------------NGFSSHFVSAKTGDSVFLCFQK 166 (178)
T ss_dssp CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred ccccccccc---------------------cCHHHHHHHHHH----------------cCCcEEEEeCCCCCCHHHHHHH
Confidence 999975421 122334333211 1256789999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+.+.+.+..+
T Consensus 167 l~~~~~~~~~ 176 (178)
T 2hxs_A 167 VAAEILGIKL 176 (178)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHHhhhh
Confidence 9998876543
No 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=3.6e-21 Score=169.37 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=91.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++||+|
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 137 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVT----------SLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137 (201)
T ss_dssp ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETT----------CHHHHHHHHHHHHHHHC-----CCCEEEEEE
T ss_pred CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 456789999999999999999999999999999999984 5567777778888877655556789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....++..+.. . ..+.++++||+++.||+++|++
T Consensus 138 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 138 KADLSPERE---------------------VQAVEGKKLAE-S---------------WGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECCTTCHHHHHHHHHH
T ss_pred CccCccccc---------------------cCHHHHHHHHH-H---------------hCCeEEEEeCCCCCCHHHHHHH
Confidence 999975431 22233333321 1 1256789999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+.+..
T Consensus 181 l~~~i~~~~ 189 (201)
T 3oes_A 181 VIQEIARVE 189 (201)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 999987653
No 30
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=2.3e-21 Score=166.48 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=79.4
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH---cCCCCCCCcEEEE
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL---KQPCFEKTSFMLF 260 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~---~~~~~~~~~iilv 260 (358)
...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+. ......+.|+++|
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 124 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT----------NASSFENIKSWRDEFLVHANVNSPETFPFVIL 124 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECC----------ChHHHHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence 45688999999999999999999999999999999985 3344444444444443 3233457899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+..+.-. ...+++..+... ...+.++++||++++||+++|
T Consensus 125 ~nK~Dl~~~~~~--------------------v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~ 169 (182)
T 1ky3_A 125 GNKIDAEESKKI--------------------VSEKSAQELAKS---------------LGDIPLFLTSAKNAINVDTAF 169 (182)
T ss_dssp EECTTSCGGGCC--------------------SCHHHHHHHHHH---------------TTSCCEEEEBTTTTBSHHHHH
T ss_pred EECCcccccccc--------------------CCHHHHHHHHHh---------------cCCCeEEEEecCCCCCHHHHH
Confidence 999999543210 123344333211 112457889999999999999
Q ss_pred HHHHHHHHHhhh
Q 018283 341 KLVDETLRRRHL 352 (358)
Q Consensus 341 ~~i~~~i~~~~~ 352 (358)
+++.+.+++.+.
T Consensus 170 ~~l~~~~~~~~~ 181 (182)
T 1ky3_A 170 EEIARSALQQNQ 181 (182)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=3.1e-21 Score=166.23 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=91.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++||+|
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 119 (181)
T 3t5g_A 50 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVT----------SIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119 (181)
T ss_dssp TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHC----CCEEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556688999999999999999999999999999999984 4566777777777776544445789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++++||++++||.++|+.
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 120 KKDLHMERV---------------------ISYEEGKALAES----------------WNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTSHHHHHHHHHH
T ss_pred Cccchhcce---------------------ecHHHHHHHHHH----------------hCCcEEEEecCCCCCHHHHHHH
Confidence 999864321 223444433211 1256888999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+...+
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999987543
No 32
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=2.8e-21 Score=164.33 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=86.4
Q ss_pred cccceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++. .|..|+++++++|+|+|++ +..++.....|+..+.......++|+++|+
T Consensus 47 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (169)
T 3q85_A 47 DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT----------DRRSFSKVPETLLRLRAGRPHHDLPVILVG 116 (169)
T ss_dssp TTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred CCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC----------ChHHHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 56678999999999999987 8888999999999999984 456677777777777665444579999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+.+++. ...+++..+.. ...+.++++||++++||+++|+
T Consensus 117 nK~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 117 NKSDLARSRE---------------------VSLEEGRHLAG----------------TLSCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECBTTTTBSHHHHHH
T ss_pred eCcchhhccc---------------------CCHHHHHHHHH----------------HcCCcEEEecCccCCCHHHHHH
Confidence 9999975421 22333333311 1125678999999999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
++.+.+..
T Consensus 160 ~l~~~i~~ 167 (169)
T 3q85_A 160 GAVRQIRL 167 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=167.63 Aligned_cols=123 Identities=21% Similarity=0.287 Sum_probs=93.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ..+.|++||+|
T Consensus 54 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ilv~n 121 (181)
T 3tw8_B 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------SAESFVNVKRWLHEINQN--CDDVCRILVGN 121 (181)
T ss_dssp TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH--CTTSEEEEEEE
T ss_pred CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 455689999999999999999999999999999999984 445666666666666543 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....++..+... ..+.++++||+++.||+++|++
T Consensus 122 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 122 KNDDPERKV---------------------VETEDAYKFAGQ----------------MGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCCEEECBTTTTBSHHHHHHH
T ss_pred CCCCchhcc---------------------cCHHHHHHHHHH----------------cCCeEEEEECCCCCCHHHHHHH
Confidence 999876432 222333333211 1245788999999999999999
Q ss_pred HHHHHHHhhhhh
Q 018283 343 VDETLRRRHLFE 354 (358)
Q Consensus 343 i~~~i~~~~~~~ 354 (358)
+.+.+.+...++
T Consensus 165 l~~~~~~~~~~~ 176 (181)
T 3tw8_B 165 ITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999998765544
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=172.14 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=90.9
Q ss_pred cccceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++. +|..||++++++|+|+|++ +..++.....|+..+.......++|++||+
T Consensus 68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 137 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT----------DRRSFSKVPETLLRLRAGRPHHDLPVILVG 137 (195)
T ss_dssp TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 56678999999999998875 8899999999999999984 455666666777776553333578999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++. ...+++..+.. . ..+.++++||+++.||+++|+
T Consensus 138 nK~Dl~~~~~---------------------v~~~~~~~~a~-~---------------~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 138 NKSDLARSRE---------------------VSLEEGRHLAG-T---------------LSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp ECTTCTTTCC---------------------SCHHHHHHHHH-H---------------TTCEEEEEBTTTTBSHHHHHH
T ss_pred echhccccCC---------------------cCHHHHHHHHH-H---------------hCCEEEEEcCCCCCCHHHHHH
Confidence 9999965321 22344443311 1 124678999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.+...
T Consensus 181 ~l~~~i~~~ 189 (195)
T 3cbq_A 181 GAVRQIRLR 189 (195)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988654
No 35
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=167.66 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=93.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|+++++++|||+|++ +..++.....|+..+.... ..+.|++||+|
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~----------~~~s~~~~~~~l~~i~~~~-~~~~piilv~n 138 (193)
T 2oil_A 70 GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT----------KHQTYAVVERWLKELYDHA-EATIVVMLVGN 138 (193)
T ss_dssp TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHTTS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCeEEEEEE
Confidence 456789999999999999999999999999999999984 3455666666777765532 35789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++++||++++||+++|++
T Consensus 139 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 139 KSDLSQARE---------------------VPTEEARMFAEN----------------NGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHH
T ss_pred CCCcccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999975421 123344433211 1256788999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+.+.++++..
T Consensus 182 l~~~i~~~~~ 191 (193)
T 2oil_A 182 VLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987543
No 36
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.86 E-value=1.7e-22 Score=190.45 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=87.0
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhh---hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 242 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~---~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~ 242 (358)
.||.|+....+ + ..+++++||||||++|++ .|..||++++++|||+|+++ ...+.+..+.++
T Consensus 32 ~~Tig~~~~~v------~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd--------~~~~~~~~l~~~ 96 (331)
T 3r7w_B 32 ESTSNPSLEHF------S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD--------EYINAITNLAMI 96 (331)
T ss_dssp CCCCSCCCEEE------C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS--------CTTHHHHHHHHH
T ss_pred cCeeeeeeEEE------c-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc--------hHHHHHHHHHHH
Confidence 47778766555 3 348999999999999975 46999999999999999852 111222223333
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce
Q 018283 243 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV 322 (358)
Q Consensus 243 ~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 322 (358)
+..+.. ..+++|++|++||+||..+.-+.... + + ...+++.+ +. ........
T Consensus 97 l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~--R----~--------V~~~~~~~--------la----~~~~~~~~ 148 (331)
T 3r7w_B 97 IEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQ--R----D--------IMQRTGEE--------LL----ELGLDGVQ 148 (331)
T ss_dssp HHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHH--H----H--------HHHHHHHT--------TS----SSSCSCCC
T ss_pred HHHHhh--cCCCCcEEEEEECcccCchhhhhhHH--H----H--------hhHHHHHH--------HH----hhcccccC
Confidence 333322 13479999999999996431000000 0 0 00111111 11 00000135
Q ss_pred EEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
+.+|+|||+| .||.++|..|+..|+.
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred ceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 8899999998 5999999999987653
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.86 E-value=8.4e-21 Score=162.09 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=85.1
Q ss_pred cccceEEEEEecCCCch--hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283 183 KKSGEVYRLFDVGGQRN--ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~--~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv 260 (358)
+...+.+.+||++|++. ++..+..|+++++++|+|+|++ +..++.....|+..+.......++|+++|
T Consensus 48 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~~~~~piilv 117 (175)
T 2nzj_A 48 DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA----------DRGSFESASELRIQLRRTHQADHVPIILV 117 (175)
T ss_dssp TTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT----------CHHHHHHHHHHHHHHHHCC----CCEEEE
T ss_pred CCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 55668899999999998 6777888999999999999984 45667676777777765444457899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+..++. ...+++..+.. . ..+.++++||++++||+++|
T Consensus 118 ~NK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 118 GNKADLARCRE---------------------VSVEEGRACAV-V---------------FDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EECTTCTTTCC---------------------SCHHHHHHHHH-H---------------HTSEEEECBTTTTBSHHHHH
T ss_pred EEChhhccccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEecCCCCCHHHHH
Confidence 99999965421 12233333311 1 12567899999999999999
Q ss_pred HHHHHHHHHhh
Q 018283 341 KLVDETLRRRH 351 (358)
Q Consensus 341 ~~i~~~i~~~~ 351 (358)
+++.+.+....
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=5.7e-21 Score=161.47 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=88.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......+.|+++++|
T Consensus 48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 117 (168)
T 1u8z_A 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 556688999999999999999999999999999999984 4456666666666665543345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++++||+++.||+++|++
T Consensus 118 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 118 KSDLEDKRQ---------------------VSVEEAKNRADQ----------------WNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred CccccccCc---------------------cCHHHHHHHHHH----------------cCCeEEEeCCCCCCCHHHHHHH
Confidence 999965421 223444444221 1256788999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988763
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=4.5e-21 Score=165.48 Aligned_cols=120 Identities=17% Similarity=0.239 Sum_probs=90.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++||+|
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVT----------DKASFEHVDRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 556778899999999999999999999999999999984 4455555566666665433345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc-ChhhHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~-d~~ni~~vf~ 341 (358)
|+|+.+++. ...+++.++.. .+ .+.++++||+ +++||+++|+
T Consensus 132 K~Dl~~~~~---------------------v~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 132 KVDLMHLRK---------------------VTRDQGKEMAT-KY---------------NIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp CTTCSTTCC---------------------SCHHHHHHHHH-HH---------------TCCEEEEBCSSSCBSHHHHHH
T ss_pred CCCchhccC---------------------cCHHHHHHHHH-Hh---------------CCeEEEeccCCCCCCHHHHHH
Confidence 999965321 22334433322 11 1457889999 9999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
++.+.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998864
No 40
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.3e-21 Score=173.08 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=89.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...++|++||+|
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~N 139 (201)
T 2ew1_A 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT----------CEESFRCLPEWLREIEQY-ASNKVITVLVGN 139 (201)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 456689999999999999999999999999999999985 344554445555554332 124689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++..+... ..+.++++||++++||+++|++
T Consensus 140 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 140 KIDLAERRE---------------------VSQQRAEEFSEA----------------QDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred CCCCccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965421 122334333211 1245788999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+.+..
T Consensus 183 l~~~i~~~~ 191 (201)
T 2ew1_A 183 LACRLISEA 191 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=1.8e-21 Score=168.35 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=89.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..+.|++||+|
T Consensus 55 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n 123 (186)
T 2bme_A 55 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------SRETYNALTNWLTDARMLA-SQNIVIILCGN 123 (186)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 455689999999999999999999999999999999984 3445555555665554322 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....++.++... ..+.++++||++++||+++|++
T Consensus 124 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 124 KKDLDADRE---------------------VTFLEASRFAQE----------------NELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence 999965321 223444433211 2367889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 167 l~~~~~~~ 174 (186)
T 2bme_A 167 CARKILNK 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 42
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.86 E-value=1.4e-20 Score=163.13 Aligned_cols=121 Identities=14% Similarity=0.225 Sum_probs=91.7
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
.+.+.+||++|++.++..|..|+++++++|||+|++ +..++.+...|+..+.......++|+++|+||+|
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT----------NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 679999999999999999999999999999999984 4455666666776665544345789999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+..++. ...+++.++.. .+ .+.++++||+++.||+++|+++.+
T Consensus 139 l~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 139 LEDQRA---------------------VKEEEARELAE-KY---------------GIPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp CGGGCC---------------------SCHHHHHHHHH-HH---------------TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccc---------------------cCHHHHHHHHH-Hc---------------CCCEEEEECCCCCCHHHHHHHHHH
Confidence 965421 12233333321 11 145788999999999999999999
Q ss_pred HHHHhhhh
Q 018283 346 TLRRRHLF 353 (358)
Q Consensus 346 ~i~~~~~~ 353 (358)
.+.+...+
T Consensus 182 ~~~~~~~~ 189 (195)
T 3bc1_A 182 LIMKRMER 189 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99865433
No 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=169.31 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=94.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++||+|
T Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (206)
T 2bov_A 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN 127 (206)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 455678999999999999999999999999999999984 4456666667777766544345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.++++||+++.||+++|++
T Consensus 128 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 128 KSDLEDKRQ---------------------VSVEEAKNRAEQ----------------WNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred ccCcccccc---------------------ccHHHHHHHHHH----------------hCCeEEEEeCCCCCCHHHHHHH
Confidence 999965421 223444444321 1256789999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+.+.+.....
T Consensus 171 l~~~i~~~~~ 180 (206)
T 2bov_A 171 LMREIRARKM 180 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccc
Confidence 9999976543
No 44
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.1e-21 Score=166.92 Aligned_cols=120 Identities=15% Similarity=0.268 Sum_probs=90.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...++|++||+|
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n 136 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWATQIKTY-SWDNAQVILVGN 136 (191)
T ss_dssp TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 567789999999999999999999999999999999984 345555555555555432 235789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++..+.. . ..+.++++||+++.||+++|++
T Consensus 137 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 137 KCDMEEERV---------------------VPTEKGQLLAE-Q---------------LGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHHH
T ss_pred CCCCccccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEECCCCCCHHHHHHH
Confidence 999966532 12233333211 1 1256889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 180 l~~~i~~~ 187 (191)
T 3dz8_A 180 LVDAICDK 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=4.4e-21 Score=164.30 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=87.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|+++ ..+...+..++..+..........+.|+++|+|
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~n 124 (177)
T 1wms_A 52 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD-------SQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124 (177)
T ss_dssp TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHccccccCCCcEEEEEE
Confidence 4556899999999999999999999999999999999852 112223333444444443333345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++.++... ...+.++++||++++||+++|++
T Consensus 125 K~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 125 KIDISERQ----------------------VSTEEAQAWCRD---------------NGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp CTTCSSCS----------------------SCHHHHHHHHHH---------------TTCCCEEECCTTTCTTHHHHHHH
T ss_pred CCcccccc----------------------cCHHHHHHHHHh---------------cCCceEEEEeCCCCCCHHHHHHH
Confidence 99986211 223444444221 12255789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 168 l~~~~~~ 174 (177)
T 1wms_A 168 AVRRVLA 174 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998875
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=6.9e-21 Score=161.21 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=89.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....++..+.......+.|+++++|
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1c1y_A 47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT----------AQSTFNDLQDLREQILRVKDTEDVPMILVGN 116 (167)
T ss_dssp SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCcCCCcEEEEEE
Confidence 556788999999999999999999999999999999984 3455555555665555433345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++..+.. .+ ..+.++++||+++.||+++|++
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~-~~--------------~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 117 KCDLEDERV---------------------VGKEQGQNLAR-QW--------------CNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHH-HT--------------TSCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------CCHHHHHHHHH-Hc--------------cCCcEEEecCCCCCCHHHHHHH
Confidence 999975431 12233333311 11 1356889999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988763
No 47
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.86 E-value=8e-21 Score=165.24 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=90.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++ |+++++++|+|+|++ +..++.+...|+..+.......++|++|++|
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLE----------DEISFQTVYNYFLRLCSFRNASEVPMVLVGT 127 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 5667889999999999887 889999999999984 5667778788888887654446789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+.-. ....+++.++... + ..+.++++||++++||+++|++
T Consensus 128 K~Dl~~~~~~-------------------~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 128 QDAISAANPR-------------------VIDDSRARKLSTD-L--------------KRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp CTTCBTTBCC-------------------CSCHHHHHHHHHH-T--------------TTCEEEEEBTTTTBTHHHHHHH
T ss_pred Cccccccccc-------------------ccCHHHHHHHHHH-c--------------CCCeEEEecCCCCCCHHHHHHH
Confidence 9998532110 0233444443211 1 1256789999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+++..
T Consensus 174 l~~~i~~~~ 182 (184)
T 3ihw_A 174 VAQKVVALR 182 (184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999988654
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=5.1e-21 Score=163.88 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=87.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|||+|++ +..++.....|+..+.... ..+.|+++|+|
T Consensus 60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n 128 (179)
T 1z0f_A 60 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARNLT-NPNTVIILIGN 128 (179)
T ss_dssp TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCc----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 556789999999999999999999999999999999985 3344444455555543321 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.++++||++++||+++|++
T Consensus 129 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 129 KADLEAQRD---------------------VTYEEAKQFAEE----------------NGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965421 223444444221 1256889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 172 l~~~i~~ 178 (179)
T 1z0f_A 172 AAKKIYQ 178 (179)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9988754
No 49
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=7.7e-21 Score=168.97 Aligned_cols=118 Identities=16% Similarity=0.240 Sum_probs=90.7
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
.+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.....|+..+.......++|++||+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~----------~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT----------SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETT----------CHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 688999999999999999999999999999999984 4566666667776665543336799999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+..++. ...+++.++.. . ..+.++++||++++||+++|+++.+
T Consensus 153 l~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 153 LPDQRE---------------------VNERQARELAD-K---------------YGIPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp CGGGCC---------------------SCHHHHHHHHH-H---------------TTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred cccccc---------------------cCHHHHHHHHH-H---------------CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 965421 12233333321 1 1245788999999999999999999
Q ss_pred HHHHh
Q 018283 346 TLRRR 350 (358)
Q Consensus 346 ~i~~~ 350 (358)
.+.+.
T Consensus 196 ~i~~~ 200 (217)
T 2f7s_A 196 LIMKR 200 (217)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 50
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=184.03 Aligned_cols=134 Identities=21% Similarity=0.323 Sum_probs=99.7
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.||.++....+ ....+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....++..
T Consensus 194 ~pT~~~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~----------~~~s~~~~~~~~~~ 257 (329)
T 3o47_A 194 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVNEAREELMR 257 (329)
T ss_dssp EEETTEEEEEE------EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETT----------CSSSHHHHHHHHHH
T ss_pred ccccceEEEEE------ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------chHHHHHHHHHHHH
Confidence 46888877777 778899999999999999999999999999999999984 56778888888888
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......++|++||+||+|+.++. ..++... .+... .. ..+.+.+
T Consensus 258 ~~~~~~~~~~piilV~NK~Dl~~~~-----------------------~~~~i~~----~~~~~----~~---~~~~~~~ 303 (329)
T 3o47_A 258 MLAEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITD----KLGLH----SL---RHRNWYI 303 (329)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHH----HHTCT----TC---CSSCEEE
T ss_pred HHhhhccCCCeEEEEEECccCCccc-----------------------CHHHHHH----Hhchh----hh---hcCCCEE
Confidence 8877666789999999999986431 1122111 11110 01 2345788
Q ss_pred EEeeccChhhHHHHHHHHHHHHHH
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
+++||++++||+++|++|.+.+.+
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=169.49 Aligned_cols=120 Identities=14% Similarity=0.184 Sum_probs=87.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.. ....+.|++||+|
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~----------~~~s~~~~~~~~~~i~~-~~~~~~piilV~N 139 (192)
T 2il1_A 71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT----------KKETFDDLPKWMKMIDK-YASEDAELLLVGN 139 (192)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHH-hcCCCCcEEEEEE
Confidence 455689999999999999999999999999999999985 33444444444444322 2234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. . -..+.++++||++++||+++|++
T Consensus 140 K~Dl~~~~~---------------------v~~~~~~~~~~-~--------------~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 140 KLDCETDRE---------------------ITRQQGEKFAQ-Q--------------ITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHH-T--------------STTCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHH-h--------------cCCCeEEEEeCCCCCCHHHHHHH
Confidence 999965421 12233333211 0 01356789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 184 l~~~i~~ 190 (192)
T 2il1_A 184 LVDDILK 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 52
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=7.8e-21 Score=161.15 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=88.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... .++.|++||+|
T Consensus 51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iilv~n 119 (170)
T 1r2q_A 51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT----------NEESFARAKNWVKELQRQA-SPNIVIALSGN 119 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 556789999999999999999999999999999999984 4456666666776665432 35789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.++++||++++||+++|++
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 120 KADLANKRA---------------------VDFQEAQSYADD----------------NSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CccCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999965421 223444443211 1256788999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 88754
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.3e-21 Score=163.41 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=79.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..+.|++||+|
T Consensus 56 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n 124 (180)
T 2g6b_A 56 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT----------NKASFDNIQAWLTEIHEYA-QHDVALMLLGN 124 (180)
T ss_dssp TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 456688999999999999999999999999999999985 3344444455555554322 14789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++.. . ..+.++++||++++||+++|++
T Consensus 125 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 125 KVDSAHERV---------------------VKREDGEKLAK-E---------------YGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp CCSTTSCCC---------------------SCHHHHHHHHH-H---------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred CcccCcccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999965321 12233333321 1 1245788999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+.+.+.+.+.
T Consensus 168 l~~~~~~~~~ 177 (180)
T 2g6b_A 168 IAKELKRRSM 177 (180)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhc
Confidence 9998875443
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=9.9e-21 Score=163.21 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=93.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|+++|+|
T Consensus 62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 131 (187)
T 2a9k_A 62 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN 131 (187)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 455678999999999999999999999999999999984 4456666666666665543334789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.++++||++++||+++|++
T Consensus 132 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 132 KSDLEDKRQ---------------------VSVEEAKNRAEQ----------------WNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CccccccCc---------------------cCHHHHHHHHHH----------------cCCeEEEeCCCCCCCHHHHHHH
Confidence 999965421 223444443211 1256789999999999999999
Q ss_pred HHHHHHHhhh
Q 018283 343 VDETLRRRHL 352 (358)
Q Consensus 343 i~~~i~~~~~ 352 (358)
+.+.+.+...
T Consensus 175 l~~~i~~~~~ 184 (187)
T 2a9k_A 175 LMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999976543
No 55
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=1.4e-20 Score=163.76 Aligned_cols=120 Identities=14% Similarity=0.281 Sum_probs=89.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|++||+|
T Consensus 67 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n 135 (189)
T 2gf9_A 67 HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIA----------NQESFAAVQDWATQIKTY-SWDNAQVILVGN 135 (189)
T ss_dssp TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 556789999999999999999999999999999999984 344555555566555432 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++.. .+ .+.++++||+++.||+++|++
T Consensus 136 K~Dl~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 136 KCDLEDERV---------------------VPAEDGRRLAD-DL---------------GFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHH-HH---------------TCEEEECBTTTTBSHHHHHHH
T ss_pred CcccccccC---------------------CCHHHHHHHHH-Hc---------------CCeEEEEECCCCCCHHHHHHH
Confidence 999965421 12233333321 11 256889999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.++
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 56
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.85 E-value=2.7e-21 Score=170.04 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=83.5
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC--CCCCcEEEEeeC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFMLFLNK 263 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~iilv~NK 263 (358)
.+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+..... ..++|++||+||
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVS----------SMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETT----------CHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 789999999999999999999999999999999984 44566666677777655322 257899999999
Q ss_pred CCchh-hhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC-hhhHHHHHH
Q 018283 264 FDIFE-KKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD-PKLVKKTFK 341 (358)
Q Consensus 264 ~Dl~~-eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d-~~ni~~vf~ 341 (358)
+|+.. ++. ...+++.++... ..+.++++||++ +.||+++|+
T Consensus 142 ~Dl~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQRHQ---------------------VRLDMAQDWATT----------------NTLDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C-------C---------------------CCHHHHHHHHHH----------------TTCEEEECCC-------CHHHH
T ss_pred cccchhhcc---------------------CCHHHHHHHHHH----------------cCCEEEEeccCCCCcCHHHHHH
Confidence 99965 221 223444444221 125788999999 999999999
Q ss_pred HHHHHHHHhhhhh
Q 018283 342 LVDETLRRRHLFE 354 (358)
Q Consensus 342 ~i~~~i~~~~~~~ 354 (358)
++.+.+.+...++
T Consensus 185 ~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 185 SIATTFYRNYEDK 197 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999988665443
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=9.9e-21 Score=164.68 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=92.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|||+|++ +..++.....|+..+.......++|++||+|
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT----------RRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Confidence 556789999999999999999999999999999999984 4455666667777776544345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++.++... ..+.++++||++++||+++|++
T Consensus 130 K~Dl~~~~----------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 130 KIDKENRE----------------------VDRNEGLKFARK----------------HSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp CTTSSSCC----------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CCcCcccc----------------------cCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence 99984321 123344443221 1256789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 172 l~~~~~~~ 179 (195)
T 1x3s_A 172 LVEKIIQT 179 (195)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhh
Confidence 99998753
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=4.3e-21 Score=162.06 Aligned_cols=120 Identities=14% Similarity=0.212 Sum_probs=90.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....++..+.......+.|+++|+|
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1kao_A 47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLV----------NQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116 (167)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556678999999999999999999999999999999984 4456666667777766543345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. .+ .+.++++||++++||+++|++
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 117 KVDLESERE---------------------VSSSEGRALAE-EW---------------GCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHH-HH---------------TSCEEEECTTCHHHHHHHHHH
T ss_pred CCccccccc---------------------CCHHHHHHHHH-Hh---------------CCCEEEecCCCCcCHHHHHHH
Confidence 999865321 11233333321 11 145788999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988753
No 59
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=1.1e-20 Score=168.48 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=89.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+. ..|+..+... .+++|++||+
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 138 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS----------RPETVDSALKKWRTEILDY--CPSTRVLLIG 138 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CTHHHHHHHTHHHHHHHHH--CTTSEEEEEE
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECc----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556789999999999999999999999999999999984 45666663 3444444332 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhh-HHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL-VKKT 339 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~n-i~~v 339 (358)
||+|+..+......+. +. .......+++..+... ..+ .+++|||+++.| |+++
T Consensus 139 nK~Dl~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~----------------~~~~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 139 CKTDLRTDLSTLMELS------HQ---KQAPISYEQGCAIAKQ----------------LGAEIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp ECGGGGGCHHHHHHHH------HT---TCCCCCHHHHHHHHHH----------------HTCSEEEECCTTTCHHHHHHH
T ss_pred EChhhccchhhhhhhc------cc---ccCccCHHHHHHHHHH----------------cCCCEEEEeccCCCcccHHHH
Confidence 9999976421000000 00 0000234444444221 124 678999999998 9999
Q ss_pred HHHHHHHHHHh
Q 018283 340 FKLVDETLRRR 350 (358)
Q Consensus 340 f~~i~~~i~~~ 350 (358)
|+.+.+.++..
T Consensus 194 f~~l~~~~~~~ 204 (214)
T 3q3j_B 194 FRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999988754
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3e-21 Score=168.66 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=88.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|+++|+|
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piiiv~N 136 (192)
T 2fg5_A 68 GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDIT----------KQDSFYTLKKWVKELKEH-GPENIVMAIAGN 136 (192)
T ss_dssp SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETT----------CTHHHHHHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 556789999999999999999999999999999999984 345555555666655432 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++.++.. ...+.++++||+++.||+++|++
T Consensus 137 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 137 KCDLSDIRE---------------------VPLKDAKEYAE----------------SIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHH----------------TTTCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHH----------------HcCCEEEEEeCCCCcCHHHHHHH
Confidence 999965321 22344444321 12256889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+.+
T Consensus 180 l~~~i~~ 186 (192)
T 2fg5_A 180 ISRQIPP 186 (192)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9887653
No 61
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=1.3e-20 Score=161.63 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=92.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..++......+.|+++|+|
T Consensus 53 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 122 (181)
T 2fn4_A 53 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIN----------DRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122 (181)
T ss_dssp TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445678999999999999999999999999999999984 4556666667777765433345789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. ...+.++++||++++||+++|++
T Consensus 123 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 123 KADLESQRQ---------------------VPRSEASAFGA----------------SHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHH----------------HcCCeEEEecCCCCCCHHHHHHH
Confidence 999965421 11233333211 11356889999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+.+..
T Consensus 166 l~~~~~~~~ 174 (181)
T 2fn4_A 166 LVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999987643
No 62
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.85 E-value=1.2e-20 Score=167.46 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=57.9
Q ss_pred ceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEEEee
Q 018283 186 GEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLFLN 262 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iilv~N 262 (358)
.+.+.+|||+|++.++. .|..|+++++++|||+|++++ ...+.+...++..++.. ....++|++||+|
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 68999999999999998 899999999999999998521 23355556666555432 1223689999999
Q ss_pred CCCchhh
Q 018283 263 KFDIFEK 269 (358)
Q Consensus 263 K~Dl~~e 269 (358)
|+|+..+
T Consensus 124 K~Dl~~~ 130 (214)
T 2fh5_B 124 KQDIAMA 130 (214)
T ss_dssp CTTSTTC
T ss_pred CCCCCCc
Confidence 9999653
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=6.9e-21 Score=161.66 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=87.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..+.|+++|+|
T Consensus 48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n 116 (170)
T 1g16_A 48 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT----------DERTFTNIKQWFKTVNEHA-NDEAQLLLVGN 116 (170)
T ss_dssp SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 455688999999999999999999999999999999985 3344545555555554321 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++.++.. .+ .+.++++||++++||+++|++
T Consensus 117 K~Dl~~~~----------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 117 KSDMETRV----------------------VTADQGEALAK-EL---------------GIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp CTTCTTCC----------------------SCHHHHHHHHH-HH---------------TCCEEECBTTTTBSHHHHHHH
T ss_pred CccCCcCc----------------------cCHHHHHHHHH-Hc---------------CCeEEEEECCCCCCHHHHHHH
Confidence 99993211 12233333321 11 245788999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988754
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.2e-20 Score=168.46 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=90.7
Q ss_pred cccceEEEEEecCCCch-hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~-~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++. ++.++..||+.++++|+|||+ ++..++.....|+..+.......++|++||+
T Consensus 83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv----------t~~~sf~~~~~~~~~l~~~~~~~~~piilVg 152 (211)
T 2g3y_A 83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVG 152 (211)
T ss_dssp TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET----------TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEE
T ss_pred CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 56678899999999988 677788899999999999998 4567777777777766543333578999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+||.+++. ...+++..+. .. ..+.+++|||++++||+++|+
T Consensus 153 NK~DL~~~r~---------------------v~~~e~~~~a-~~---------------~~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 153 NKSDLVRCRE---------------------VSVSEGRACA-VV---------------FDCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHH-HH---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred EChHHhcCce---------------------EeHHHHHHHH-HH---------------cCCEEEEEeCCCCCCHHHHHH
Confidence 9999965421 1223333321 11 125678999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.+...
T Consensus 196 ~l~~~i~~~ 204 (211)
T 2g3y_A 196 GIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988643
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=2.2e-20 Score=164.17 Aligned_cols=120 Identities=16% Similarity=0.278 Sum_probs=90.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|++||+|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n 121 (203)
T 1zbd_A 53 NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWSTQIKTY-SWDNAQVLLVGN 121 (203)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-SCSSCEEEEEEE
T ss_pred CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 556789999999999999999999999999999999984 345566666666665442 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. .+ .+.++++||+++.||+++|++
T Consensus 122 K~Dl~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 122 KCDMEDERV---------------------VSSERGRQLAD-HL---------------GFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp CTTCTTSCC---------------------SCHHHHHHHHH-HH---------------TCEEEECBTTTTBSSHHHHHH
T ss_pred CcccCcccc---------------------cCHHHHHHHHH-HC---------------CCeEEEEECCCCCCHHHHHHH
Confidence 999965321 12233333321 11 256789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 165 l~~~i~~~ 172 (203)
T 1zbd_A 165 LVDVICEK 172 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 66
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=7.2e-21 Score=161.74 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|+++|+|
T Consensus 51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piilv~n 119 (170)
T 1z08_A 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDIT----------DEDSFQKVKNWVKELRKM-LGNEICLCIVGN 119 (170)
T ss_dssp SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-HGGGSEEEEEEE
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCeEEEEEE
Confidence 556789999999999999999999999999999999985 334555555555544321 123689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++.++... ..+.++++||++++||+++|++
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 120 KIDLEKERH---------------------VSIQEAESYAES----------------VGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEEBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHH
Confidence 999975421 223444443211 1256788999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 67
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=164.83 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=85.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CCCCCcEEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLF 260 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~iilv 260 (358)
+...+.+.+|||+|++.++.. ..|+++++++|+|+|++ +..++.....|+..+.... ...++|++||
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 133 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVD----------SRQSFDSSSSYLELLALHAKETQRSIPALLL 133 (187)
T ss_dssp TTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred CCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 566789999999999999874 78999999999999984 4556666666666654321 1247899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec-cChhhHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA-LDPKLVKKT 339 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA-~d~~ni~~v 339 (358)
+||+|+..++. ...+++.++... ..+.++++|| ++++||+++
T Consensus 134 ~nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 134 GNKLDMAQYRQ---------------------VTKAEGVALAGR----------------FGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EECGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEECCSSSCSHHHHHH
T ss_pred EECcchhhcCc---------------------cCHHHHHHHHHH----------------cCCcEEEEeecCccccHHHH
Confidence 99999965421 223444444221 1256789999 899999999
Q ss_pred HHHHHHHHHH
Q 018283 340 FKLVDETLRR 349 (358)
Q Consensus 340 f~~i~~~i~~ 349 (358)
|+.+.+.+.+
T Consensus 177 f~~l~~~i~~ 186 (187)
T 3c5c_A 177 FHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=1.1e-20 Score=162.53 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=89.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... .++.|+++|+|
T Consensus 57 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~n 125 (181)
T 2efe_B 57 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT----------NQASFERAKKWVQELQAQG-NPNMVMALAGN 125 (181)
T ss_dssp TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 456789999999999999999999999999999999984 4455666666776665432 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++... ..+.++++||++++||+++|++
T Consensus 126 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 126 KSDLLDARK---------------------VTAEDAQTYAQE----------------NGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEECCSSSCTTHHHHHHH
T ss_pred CCccccccc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999964321 223444443211 1256889999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+..
T Consensus 169 l~~~~~~ 175 (181)
T 2efe_B 169 IARRLPR 175 (181)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9887754
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=1.1e-20 Score=166.51 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=90.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.....|+..+.... ..+.|++||+|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n 121 (206)
T 2bcg_Y 53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT----------DQESFNGVKMWLQEIDRYA-TSTVLKLLVGN 121 (206)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 556689999999999999999999999999999999984 3455666566666654322 34789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++++||++++||+++|++
T Consensus 122 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 122 KCDLKDKRV---------------------VEYDVAKEFADA----------------NKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCCEEECCTTTCTTHHHHHHH
T ss_pred CCCCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999965421 123334333211 1245788999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 165 l~~~i~~~ 172 (206)
T 2bcg_Y 165 MARQIKES 172 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 70
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=163.64 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=89.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|++||+|
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~n 129 (196)
T 3tkl_A 61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN 129 (196)
T ss_dssp TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 455689999999999999999999999999999999985 344555555555555432 224789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ....++..+.. . ..+.++++||+++.||+++|++
T Consensus 130 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 130 KCDLTTKKV---------------------VDYTTAKEFAD-S---------------LGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHH-H---------------TTCCEEEECTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHH-H---------------cCCcEEEEeCCCCCCHHHHHHH
Confidence 999965431 22233333211 1 1245788999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+.+..
T Consensus 173 l~~~i~~~~ 181 (196)
T 3tkl_A 173 MAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999987653
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=165.98 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=86.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|++||+|
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~N 141 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVT----------CEKSFLNIREWVDMIEDA-AHETVPIMLVGN 141 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-C---CCEEEEEE
T ss_pred CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECC----------ChHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 556788999999999999999999999999999999984 334444444555444321 224689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+...... .....+++..+... ..+.++++||++++||.++|++
T Consensus 142 K~Dl~~~~~~~~~---------------~~v~~~~~~~~~~~----------------~~~~~~~~SA~~g~gv~el~~~ 190 (199)
T 2p5s_A 142 KADIRDTAATEGQ---------------KCVPGHFGEKLAMT----------------YGALFCETSAKDGSNIVEAVLH 190 (199)
T ss_dssp CGGGHHHHHHTTC---------------CCCCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccccccc---------------cccCHHHHHHHHHH----------------cCCeEEEeeCCCCCCHHHHHHH
Confidence 9999754211000 00223334333221 1256788999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 191 l~~~i~ 196 (199)
T 2p5s_A 191 LAREVK 196 (199)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998875
No 72
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=9.7e-21 Score=165.40 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=88.1
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+... |+..+.. ...++|++||+
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~~p~ilv~ 134 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVN----------NRTSFDNISTKWEPEIKH--YIDTAKTVLVG 134 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHH--HCTTSEEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHH--hCCCCCEEEEE
Confidence 556788999999999999999999999999999999984 4556666433 3333322 23578999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE-EEEeeccChhhHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK-IYRTTALDPKLVKKTF 340 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~-~~~tSA~d~~ni~~vf 340 (358)
||+|+..+.... ...+++.++... + .+. ++++||++++||+++|
T Consensus 135 nK~Dl~~~~~~~-------------------~~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 135 LKVDLRKDGSDD-------------------VTKQEGDDLCQK-L---------------GCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp ECGGGCCTTTTC-------------------CCHHHHHHHHHH-H---------------TCSCEEECBTTTTBSHHHHH
T ss_pred EChhhccCCCCc-------------------ccHHHHHHHHHh-c---------------CCCEEEEeecCCCCCHHHHH
Confidence 999997532100 223444443221 1 122 7889999999999999
Q ss_pred HHHHHHHHHh
Q 018283 341 KLVDETLRRR 350 (358)
Q Consensus 341 ~~i~~~i~~~ 350 (358)
+++.+.+++.
T Consensus 180 ~~l~~~i~~~ 189 (194)
T 3reg_A 180 EKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 73
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=4e-21 Score=162.94 Aligned_cols=120 Identities=13% Similarity=0.190 Sum_probs=88.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.... ..+.|+++++|
T Consensus 48 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n 116 (170)
T 1ek0_A 48 NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVT----------KPQSFIKARHWVKELHEQA-SKDIIIALVGN 116 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecC----------ChHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 556789999999999999999999999999999999984 4456666666676665432 35789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+.-. .....+++.++.. . ..+.++++||+++.||+++|++
T Consensus 117 K~Dl~~~~~~------------------~~v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 117 KIDXLQEGGE------------------RKVAREEGEKLAE-E---------------KGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp CGGGGGSSCC------------------CCSCHHHHHHHHH-H---------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred CCCccccccc------------------cCCCHHHHHHHHH-H---------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 9999754210 0012233333311 1 1256889999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 88755
No 74
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=163.43 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=91.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++||+
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~ 131 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVV----------SPSSFQNVSEKWVPEIRCH--CPKAPIILVG 131 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CSSSCEEEEE
T ss_pred CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 455688999999999999999999999999999999984 445666655 455555432 2378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+......+ .+. .......+++..+.. .+ ..+.++++||++++||+++|+
T Consensus 132 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~-~~--------------~~~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 132 TQSDLREDVKVLIEL------DKC---KEKPVPEEAAKLLAE-EI--------------KAASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp ECGGGGGCHHHHHHH------HTT---TCCCCCHHHHHHHHH-HH--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred ECHhhhhchhhhhhh------ccc---ccccCCHHHHHHHHH-hc--------------CCcEEEEEecCCCCCHHHHHH
Confidence 999997542110000 000 000123344444321 11 113678999999999999999
Q ss_pred HHHHHHHHhhh
Q 018283 342 LVDETLRRRHL 352 (358)
Q Consensus 342 ~i~~~i~~~~~ 352 (358)
++.+.+++..-
T Consensus 188 ~l~~~~~~~~~ 198 (201)
T 2q3h_A 188 AAIVAGIQYSD 198 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcccc
Confidence 99999886543
No 75
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=9.5e-21 Score=160.49 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=87.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... .+.|+++|+|
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~--~~~piilv~n 117 (168)
T 1z2a_A 50 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTT----------DRESFEAISSWREKVVAEV--GDIPTALVQN 117 (168)
T ss_dssp TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHH--CSCCEEEEEE
T ss_pred CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC--CCCCEEEEEE
Confidence 455689999999999999999999999999999999985 3344555555555554422 4689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++. ...+++.++.. . ..+.++.+||+++.||+++|++
T Consensus 118 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 118 KIDLLDDSC---------------------IKNEEAEGLAK-R---------------LKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp CGGGGGGCS---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSSHHHHHH
T ss_pred CcccCcccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEecCCCCCHHHHHHH
Confidence 999975421 12233333321 1 1256789999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+++
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988763
No 76
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.9e-21 Score=171.44 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=87.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...++|++||+|
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~----------~~~s~~~~~~~l~~i~~~-~~~~~piilv~n 126 (223)
T 3cpj_B 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS----------KSSSYENCNHWLSELREN-ADDNVAVGLIGN 126 (223)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-C----------CHHHHHHHHHHHHHHHHH-CC--CEEEEEEC
T ss_pred CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 455689999999999999999999999999999999984 445666666666666443 234789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..|... ..+.++++||++++||+++|++
T Consensus 127 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 127 KSDLAHLRA---------------------VPTEESKTFAQE----------------NQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCCC-CCCHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999975421 123344443211 1256788999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 170 l~~~i~~~ 177 (223)
T 3cpj_B 170 LINTIYQK 177 (223)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 99988643
No 77
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=4.6e-20 Score=158.40 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=84.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH---HHHHHHcCCCCCCCcEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE---LFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~iil 259 (358)
+...+.+.+||++|++. ..|+++++++|+|+|++ +..++..... ++..+.. ....++|++|
T Consensus 50 ~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~~~~piil 113 (178)
T 2iwr_A 50 DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLE----------DENSFQAVSRLHGQLSSLRG-EGRGGLALAL 113 (178)
T ss_dssp TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHC-SSSCCCEEEE
T ss_pred CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHHh-cCCCCCCEEE
Confidence 55678899999999986 46899999999999985 3444544444 4555433 2235789999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
|+||+|+..+.- .....+++.++... + ..+.+++|||++++||+++
T Consensus 114 v~nK~Dl~~~~~-------------------~~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 114 VGTQDRISASSP-------------------RVVGDARARALXAD-M--------------KRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp EEECTTCBTTBC-------------------CCSCHHHHHHHHHH-H--------------SSEEEEEEBTTTTBTHHHH
T ss_pred EEECcccccccc-------------------CcCCHHHHHHHHHh-h--------------cCCeEEEEeccccCCHHHH
Confidence 999999853210 00233444443211 0 1367889999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 018283 340 FKLVDETLRRRHLF 353 (358)
Q Consensus 340 f~~i~~~i~~~~~~ 353 (358)
|+++.+.+++....
T Consensus 160 f~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 160 FQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999865443
No 78
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=1.6e-20 Score=164.61 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=85.5
Q ss_pred ccceEEEEEecCCCchhhhh-H--hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283 184 KSGEVYRLFDVGGQRNERRK-W--IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~-w--~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv 260 (358)
...+.+++||++|++.++.. | ..||++++++|||+|+++ ...+.+.....|+..+... ..++|++||
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--------~~~~~~~~~~~~l~~~~~~--~~~~piilv 135 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD--------DYMEALTRLHITVSKAYKV--NPDMNFEVF 135 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS--------CCHHHHHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC--------chHHHHHHHHHHHHHHHhc--CCCCcEEEE
Confidence 56789999999999998666 4 899999999999999852 1235556666666665322 247899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+..+.... ....+........+.... . ....+.+++|||++ +||+++|
T Consensus 136 ~nK~Dl~~~~~~~-------------------~~~~~v~~~~~~~~~~~~----~---~~~~~~~~e~Sa~~-~~v~~~f 188 (196)
T 3llu_A 136 IHKVDGLSDDHKI-------------------ETQRDIHQRANDDLADAG----L---EKLHLSFYLTSIYD-HSIFEAF 188 (196)
T ss_dssp EECGGGSCHHHHH-------------------HHHHHHHHHHHHHHHHTT----C---TTSCEEEEEECTTS-THHHHHH
T ss_pred EeccccCchhhhh-------------------HHHhHHHHHHHHHHHHhh----h---hcCCcceEEEEech-hhHHHHH
Confidence 9999986532100 000111111122222110 0 12457889999999 9999999
Q ss_pred HHHHHHH
Q 018283 341 KLVDETL 347 (358)
Q Consensus 341 ~~i~~~i 347 (358)
+.+.+.|
T Consensus 189 ~~l~~~l 195 (196)
T 3llu_A 189 SKVVQKL 195 (196)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998865
No 79
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.5e-20 Score=163.14 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=90.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++. +..|..|+++++++|+|+|++ +.+++.+...|+..+.......++|++||+|
T Consensus 72 ~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 140 (196)
T 2atv_A 72 DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDIT----------DRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140 (196)
T ss_dssp TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 55678899999999998 899999999999999999984 3445555555565554432335789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh-hHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFK 341 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-ni~~vf~ 341 (358)
|+|+..++. ...+++..+... ..+.++++||++++ ||.++|+
T Consensus 141 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 141 KADLDHSRQ---------------------VSTEEGEKLATE----------------LACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTSEEEECCTTTCTTCHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------hCCeEEEECCCcCCcCHHHHHH
Confidence 999976421 223444443221 12568899999999 9999999
Q ss_pred HHHHHHHHhh
Q 018283 342 LVDETLRRRH 351 (358)
Q Consensus 342 ~i~~~i~~~~ 351 (358)
++.+.+.+..
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987653
No 80
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=1.5e-20 Score=163.51 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=85.4
Q ss_pred cccceEEEEEecCCCchhh-hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r-~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++ ..|..|+++++++|||+|++ +..++.....|+..+.......+.|++||+
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT----------NMASFHSLPAWIEECKQHLLANDIPRILVG 134 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4556899999999999999 99999999999999999984 345555555666666554334578999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh---hhHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP---KLVKK 338 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~---~ni~~ 338 (358)
||+|+..++. ...+++..+.. . ..+.++++||+++ +||.+
T Consensus 135 nK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 135 NKCDLRSAIQ---------------------VPTDLAQKFAD-T---------------HSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHHH-H---------------TTCCEEECCSSSGGGGSCHHH
T ss_pred ECccccccce---------------------eCHHHHHHHHH-H---------------cCCEEEEEeCCcCCcccCHHH
Confidence 9999965421 12233333211 1 1245788999999 99999
Q ss_pred HHHHHHHHHH
Q 018283 339 TFKLVDETLR 348 (358)
Q Consensus 339 vf~~i~~~i~ 348 (358)
+|+++.+.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=7.3e-21 Score=164.52 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=88.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......+.|+++|+|
T Consensus 48 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 117 (189)
T 4dsu_A 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117 (189)
T ss_dssp TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 556678999999999999999999999999999999984 4556666666776666544446789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+.+..+ ...+ .+.++++||+++.||+++|++
T Consensus 118 K~Dl~~~~----------------------~~~~~~~~~-~~~~---------------~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 118 KCDLPSRT----------------------VDTKQAQDL-ARSY---------------GIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp CTTSSSCS----------------------SCHHHHHHH-HHHH---------------TCCEEECCTTTCTTHHHHHHH
T ss_pred CccCcccc----------------------cCHHHHHHH-HHHc---------------CCeEEEEeCCCCCCHHHHHHH
Confidence 99986321 122333322 1111 245788999999999999999
Q ss_pred HHHHHHHhh
Q 018283 343 VDETLRRRH 351 (358)
Q Consensus 343 i~~~i~~~~ 351 (358)
+.+.+....
T Consensus 160 l~~~~~~~~ 168 (189)
T 4dsu_A 160 LVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987543
No 82
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.84 E-value=5.3e-20 Score=159.43 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=88.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.... .|+..+... .+++|++||+
T Consensus 51 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 118 (184)
T 1m7b_A 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS----------RPETLDSVLKKWKGEIQEF--CPNTKMLLVG 118 (184)
T ss_dssp SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCEEEEEE
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence 556789999999999999999999999999999999984 445565552 344444322 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc-ChhhHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTF 340 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~-d~~ni~~vf 340 (358)
||+|+..+......+. .+. ......+++.++... + ..+.++++||+ ++.||+++|
T Consensus 119 nK~Dl~~~~~~~~~~~-----~~~----~~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 119 CKSDLRTDVSTLVELS-----NHR----QTPVSYDQGANMAKQ-I--------------GAATYIECSALQSENSVRDIF 174 (184)
T ss_dssp ECGGGGGCHHHHHHHH-----TTT----CCCCCHHHHHHHHHH-H--------------TCSEEEECBTTTBHHHHHHHH
T ss_pred EcchhhcchhhHhhhh-----hcc----cCCCCHHHHHHHHHH-c--------------CCcEEEEeeecCCCcCHHHHH
Confidence 9999975311000000 000 011334555544221 1 11467899998 799999999
Q ss_pred HHHHHHHHH
Q 018283 341 KLVDETLRR 349 (358)
Q Consensus 341 ~~i~~~i~~ 349 (358)
+.+.+.+++
T Consensus 175 ~~i~~~~l~ 183 (184)
T 1m7b_A 175 HVATLACVN 183 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998874
No 83
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=2.2e-20 Score=187.00 Aligned_cols=135 Identities=17% Similarity=0.317 Sum_probs=104.5
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
.+|.|+....+ ..+++.+.+|||+|++.++..|..||++++++|+|+|++ +..++.+...++..
T Consensus 351 ~~T~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~----------~~~s~~~~~~~~~~ 414 (497)
T 3lvq_E 351 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHR 414 (497)
T ss_dssp CCCSSEEEEEE------ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred CCccceeEEEE------EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECc----------chhHHHHHHHHHHH
Confidence 46888887777 778899999999999999999999999999999999984 56788888889999
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
++......++|++||+||+|+.++. ...+..+. +. .+....+.+.+
T Consensus 415 ~~~~~~~~~~p~ilv~NK~Dl~~~~-----------------------~~~~~~~~----~~-------~~~~~~~~~~~ 460 (497)
T 3lvq_E 415 IINDREMRDAIILIFANKQDLPDAM-----------------------KPHEIQEK----LG-------LTRIRDRNWYV 460 (497)
T ss_dssp HHTSGGGTTCEEEEEEECCSSSSCC-----------------------CHHHHHHH----TT-------CTTCCSSCEEE
T ss_pred HhhhhhcCCCcEEEEEECCCCCcCC-----------------------CHHHHHHH----hc-------hhhhhcCCeEE
Confidence 9887666789999999999985421 11111111 00 00012345788
Q ss_pred EEeeccChhhHHHHHHHHHHHHHHh
Q 018283 326 YRTTALDPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~~i~~~i~~~ 350 (358)
+++||++++||+++|++|.+.+.+.
T Consensus 461 ~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp EECBTTTTBTHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999877543
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=3.4e-20 Score=163.13 Aligned_cols=122 Identities=13% Similarity=0.212 Sum_probs=87.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH---HcCCCCCCCcEEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV---LKQPCFEKTSFML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i---~~~~~~~~~~iil 259 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+ .......+.|++|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (207)
T 1vg8_A 53 DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT----------APNTFKTLDSWRDEFLIQASPRDPENFPFVV 122 (207)
T ss_dssp SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 456689999999999999999999999999999999985 233343333344333 3322234789999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
|+||+|+.... ...+++..+... ...+.++++||+++.||+++
T Consensus 123 v~nK~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 123 LGNKIDLENRQ----------------------VATKRAQAWCYS---------------KNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp EEECTTSSCCC----------------------SCHHHHHHHHHH---------------TTSCCEEECBTTTTBSHHHH
T ss_pred EEECCCCcccc----------------------cCHHHHHHHHHh---------------cCCceEEEEeCCCCCCHHHH
Confidence 99999985211 123334333211 12355789999999999999
Q ss_pred HHHHHHHHHHhh
Q 018283 340 FKLVDETLRRRH 351 (358)
Q Consensus 340 f~~i~~~i~~~~ 351 (358)
|+++.+.+.+..
T Consensus 166 ~~~l~~~~~~~~ 177 (207)
T 1vg8_A 166 FQTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 85
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.84 E-value=6.8e-20 Score=155.48 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=86.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
......+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ..++.|+++|+|
T Consensus 51 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~l~~~-~~~~~~iilv~n 119 (170)
T 1z0j_A 51 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDIT----------KEETFSTLKNWVRELRQH-GPPSIVVAIAGN 119 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-SCTTSEEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 556688999999999999999999999999999999984 344555555555555432 235789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+.. . ..+.++++||+++.|++++|++
T Consensus 120 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 120 KCDLTDVRE---------------------VMERDAKDYAD-S---------------IHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHH-H---------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred CCccccccc---------------------cCHHHHHHHHH-H---------------cCCEEEEEeCCCCcCHHHHHHH
Confidence 999975421 11233333211 1 1256789999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 163 i~~~i~ 168 (170)
T 1z0j_A 163 ISRRIP 168 (170)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 987653
No 86
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=5.3e-20 Score=161.23 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=86.2
Q ss_pred cccceEEEEEecCCCch-hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~-~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++. ++.++..||+.++++|+|+|++ +..++.....|+..+.......++|++|++
T Consensus 52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~~~~~~~~l~~~~~~~~~piilV~ 121 (192)
T 2cjw_A 52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSIT----------DRASFEKASELRIQLRRARQTEDIPIILVG 121 (192)
T ss_dssp TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 56677889999999987 6778899999999999999984 556676666666655442223478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++. ...+++..+- .. ..+.+++|||++++||+++|+
T Consensus 122 NK~Dl~~~r~---------------------v~~~~~~~~a-~~---------------~~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 122 NKSDLVRXRE---------------------VSVSEGRAXA-VV---------------FDXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHH-HH---------------TTCEEEECBTTTTBSHHHHHH
T ss_pred echhhhcccc---------------------ccHHHHHHHH-HH---------------hCCceEEeccccCCCHHHHHH
Confidence 9999865321 1223333221 10 124678899999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.+...
T Consensus 165 ~l~~~~~~~ 173 (192)
T 2cjw_A 165 GIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988643
No 87
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.83 E-value=8.8e-20 Score=161.62 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=89.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+. ..|+..+... ..+.|++||+
T Consensus 72 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 139 (205)
T 1gwn_A 72 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS----------RPETLDSVLKKWKGEIQEF--CPNTKMLLVG 139 (205)
T ss_dssp SSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCEEEEEE
T ss_pred CCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence 556789999999999999999999999999999999984 44556555 3444444332 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc-ChhhHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTF 340 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~-d~~ni~~vf 340 (358)
||+|+..+......+ .+. .......+++..+... + ..+.+++|||+ ++.||+++|
T Consensus 140 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 140 CKSDLRTDVSTLVEL------SNH---RQTPVSYDQGANMAKQ-I--------------GAATYIECSALQSENSVRDIF 195 (205)
T ss_dssp ECGGGGGCHHHHHHH------HTT---TCCCCCHHHHHHHHHH-H--------------TCSEEEECCTTTCHHHHHHHH
T ss_pred echhhccchhhhhhh------ccc---ccCCCCHHHHHHHHHH-c--------------CCCEEEEeeeccCCcCHHHHH
Confidence 999997531100000 000 0001234445444221 1 11467899998 789999999
Q ss_pred HHHHHHHHH
Q 018283 341 KLVDETLRR 349 (358)
Q Consensus 341 ~~i~~~i~~ 349 (358)
+.+.+.+++
T Consensus 196 ~~l~~~~l~ 204 (205)
T 1gwn_A 196 HVATLACVN 204 (205)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998875
No 88
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.83 E-value=1.8e-20 Score=161.23 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=82.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.... .|+..+... ..+.|++||+
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 119 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHY--APGVPIVLVG 119 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCCEEEEE
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 445678899999999999999999999999999999984 445555554 344444332 2378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+.+++..... ... ......+++..+.. .+ ....++++||++++||+++|+
T Consensus 120 nK~Dl~~~~~~~~~------~~~-----~~~v~~~~~~~~~~-~~--------------~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 120 TKLDLRDDKQFFID------HPG-----AVPITTVQGEELKK-LI--------------GAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp ECHHHHTCHHHHHH------C-------CCCCCHHHHHHHHH-HH--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred echhhhcCcccccc------ccc-----CCCCCHHHHHHHHH-Hc--------------CCCEEEEEECCCCCCHHHHHH
Confidence 99999765321000 000 00023344444321 11 013578899999999999999
Q ss_pred HHHHHHH
Q 018283 342 LVDETLR 348 (358)
Q Consensus 342 ~i~~~i~ 348 (358)
++.+.++
T Consensus 174 ~l~~~i~ 180 (182)
T 3bwd_D 174 AAIRVVL 180 (182)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 9988774
No 89
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=167.53 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=75.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.... .|+..+... ..++|++||+
T Consensus 78 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 145 (214)
T 2j1l_A 78 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVT----------SPNSFDNIFNRWYPEVNHF--CKKVPIIVVG 145 (214)
T ss_dssp TTEEEEEEEEEC---------------CEEEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CSSCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556788999999999999999999999999999999984 445565554 344444332 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++-....+ ... .......+++..+... + ....++++||+++.||+++|+
T Consensus 146 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 146 CKTDLRKDKSLVNKL------RRN---GLEPVTYHRGQEMARS-V--------------GAVAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp ECGGGGSCHHHHHHH------HHT---TCCCCCHHHHHHHHHH-T--------------TCSEEEECBTTTTBSHHHHHH
T ss_pred EChhhhccchhhhhh------ccc---ccCcccHHHHHHHHHh-c--------------CCCEEEEecCCCCCCHHHHHH
Confidence 999997543110000 000 0001233444443211 0 113678999999999999999
Q ss_pred HHHHHHHHhhh
Q 018283 342 LVDETLRRRHL 352 (358)
Q Consensus 342 ~i~~~i~~~~~ 352 (358)
++.+.+++...
T Consensus 202 ~l~~~~~~~~~ 212 (214)
T 2j1l_A 202 EAAEVALSSRG 212 (214)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhc
Confidence 99999986543
No 90
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=3.6e-20 Score=158.55 Aligned_cols=118 Identities=21% Similarity=0.188 Sum_probs=87.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..+.|+++|+|
T Consensus 59 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n 127 (179)
T 2y8e_A 59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NTNSFHQTSKWIDDVRTER-GSDVIIMLVGN 127 (179)
T ss_dssp TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 455688999999999999999999999999999999984 3345555555665554321 24689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++..+... ..+.++.+||+++.|++++|++
T Consensus 128 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 128 KTDLSDKRQ---------------------VSTEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEEBTTTTBSHHHHHHH
T ss_pred CCcccccCc---------------------CCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999975421 123333333221 1256788999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987654
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=5.1e-20 Score=163.04 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=88.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.... .|+..+... .+++|++||+
T Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 120 (212)
T 2j0v_A 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SKASYENVLKKWMPELRRF--APNVPIVLVG 120 (212)
T ss_dssp SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCCEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556789999999999999999999999999999999984 445565554 444444332 2378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++..... . .+....+++.++.. .+ ....++++||++++||+++|+
T Consensus 121 nK~Dl~~~~~~~~~---------~----~~~v~~~~~~~~~~-~~--------------~~~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 121 TKLDLRDDKGYLAD---------H----TNVITSTQGEELRK-QI--------------GAAAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp ECHHHHTCHHHHHT---------C----SSCCCHHHHHHHHH-HH--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred eCHHhhhCcccccc---------c----cCCCCHHHHHHHHH-Hc--------------CCceEEEccCCCCCCHHHHHH
Confidence 99999765321000 0 01123344444321 11 013578999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.+++.
T Consensus 173 ~l~~~~~~~ 181 (212)
T 2j0v_A 173 TAIKVVLQP 181 (212)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhh
Confidence 999998754
No 92
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.1e-19 Score=158.50 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=88.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.... .|+..+... .+++|++||+
T Consensus 62 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 129 (194)
T 2atx_A 62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV----------NPASFQNVKEEWVPELKEY--APNVPFLLIG 129 (194)
T ss_dssp SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 455689999999999999999999999999999999984 445565554 445554432 2378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+...... +... .......+++.++... + ....++++||++++||+++|+
T Consensus 130 nK~Dl~~~~~~~~~------~~~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 130 TQIDLRDDPKTLAR------LNDM---KEKPICVEQGQKLAKE-I--------------GACCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp ECTTSTTCHHHHHH------HTTT---TCCCCCHHHHHHHHHH-H--------------TCSCEEECCTTTCTTHHHHHH
T ss_pred EChhhcccccchhh------cccc---cCcccCHHHHHHHHHH-c--------------CCcEEEEeeCCCCCCHHHHHH
Confidence 99999754210000 0000 0001234455444221 1 012578899999999999999
Q ss_pred HHHHHHH
Q 018283 342 LVDETLR 348 (358)
Q Consensus 342 ~i~~~i~ 348 (358)
++.+.++
T Consensus 186 ~l~~~i~ 192 (194)
T 2atx_A 186 EAIIAIL 192 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998876
No 93
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=1.1e-20 Score=168.70 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=88.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ..++|++||+|
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ilv~n 127 (221)
T 3gj0_A 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT----------SRVTYKNVPNWHRDLVRV--CENIPIVLCGN 127 (221)
T ss_dssp TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH--STTCCEEEEEE
T ss_pred CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 556789999999999999999999999999999999984 345555555666665543 24789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.+++... ++..+.. ...+.++++||+++.||+++|++
T Consensus 128 K~Dl~~~~~~~-----------------------~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 128 KVDIKDRKVKA-----------------------KSIVFHR----------------KKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp CTTSSSCSSCG-----------------------GGCCHHH----------------HHTCEEEECBGGGTBTTTHHHHH
T ss_pred CCccccccccH-----------------------HHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 99996543211 0011100 11256789999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+...
T Consensus 169 l~~~l~~~ 176 (221)
T 3gj0_A 169 LARKLIGD 176 (221)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99998754
No 94
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=1.9e-19 Score=156.99 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=86.9
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
.+.+.+||++|++.++..|..|+++++++|||+|++ +..++.+...|+..+.... +.|+++|+||+|
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~----------~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D 158 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS----------NSNTLDRAKTWVNQLKISS---NYIIILVANKID 158 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT
T ss_pred eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC
Confidence 388999999999999999999999999999999984 3455556666666665432 389999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+ .++. ...+++.+++.. ..+.++.+||++++||.++|+++.+
T Consensus 159 ~-~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 159 K-NKFQ---------------------VDILEVQKYAQD----------------NNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp C-C-CC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred c-cccc---------------------CCHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHHH
Confidence 3 2210 234555554322 1256889999999999999999999
Q ss_pred HHHHh
Q 018283 346 TLRRR 350 (358)
Q Consensus 346 ~i~~~ 350 (358)
.+.++
T Consensus 201 ~~~~~ 205 (208)
T 3clv_A 201 EIYKN 205 (208)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 95
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=3.6e-20 Score=160.95 Aligned_cols=124 Identities=14% Similarity=0.163 Sum_probs=78.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.......++|+++|+|
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 134 (190)
T 3con_A 65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NSKSFADINLYREQIKRVKDSDDVPMVLVGN 134 (190)
T ss_dssp TTEEEEEEEEECCC-----------CTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 455678999999999999999999999999999999984 3345555555555543322234689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++.++.. .+ .+.++.+||+++.|++++|++
T Consensus 135 K~Dl~~~~----------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 135 KCDLPTRT----------------------VDTKQAHELAK-SY---------------GIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp CTTCSCCC----------------------SCHHHHHHHHH-HH---------------TCCEEECCTTTCTTHHHHHHH
T ss_pred CCcCCccc----------------------CCHHHHHHHHH-Hc---------------CCeEEEEeCCCCCCHHHHHHH
Confidence 99986421 12233433322 11 245788999999999999999
Q ss_pred HHHHHHHhhhhh
Q 018283 343 VDETLRRRHLFE 354 (358)
Q Consensus 343 i~~~i~~~~~~~ 354 (358)
+.+.+.+...++
T Consensus 177 l~~~~~~~~~~~ 188 (190)
T 3con_A 177 LVREIRQYRMKK 188 (190)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHhh
Confidence 999998765443
No 96
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.1e-19 Score=158.87 Aligned_cols=133 Identities=11% Similarity=0.207 Sum_probs=88.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++... ..|+..+... .+++|+++|+
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 136 (207)
T 2fv8_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVD----------SPDSLENIPEKWVPEVKHF--CPNVPIILVA 136 (207)
T ss_dssp TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556689999999999999999999999999999999984 34455554 2333333321 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+...... +.... ......+++..+... + ....++++||+++.||+++|+
T Consensus 137 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 137 NKKDLRSDEHVRTE------LARMK---QEPVRTDDGRAMAVR-I--------------QAYDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp ECGGGGGCHHHHHH------HHHTT---CCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred Echhhhccccchhh------hhhcc---cCCCCHHHHHHHHHh-c--------------CCCEEEEeeCCCCCCHHHHHH
Confidence 99999754211000 00000 000223444433111 0 112678899999999999999
Q ss_pred HHHHHHHHhh
Q 018283 342 LVDETLRRRH 351 (358)
Q Consensus 342 ~i~~~i~~~~ 351 (358)
++.+.+++..
T Consensus 193 ~l~~~i~~~~ 202 (207)
T 2fv8_A 193 TATRAALQKR 202 (207)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHHHh
Confidence 9999987543
No 97
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=5.3e-20 Score=154.96 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=87.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.......+.|+++++|
T Consensus 47 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n 116 (166)
T 2ce2_X 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 456688999999999999999999999999999999984 3455555556665554433334789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++.++. ..+ .+.++.+||+++.|++++|++
T Consensus 117 K~Dl~~~~----------------------~~~~~~~~~~-~~~---------------~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 117 KSDLAART----------------------VESRQAQDLA-RSY---------------GIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp CTTCSCCC----------------------SCHHHHHHHH-HHH---------------TCCEEEECTTTCTTHHHHHHH
T ss_pred chhhhhcc----------------------cCHHHHHHHH-HHc---------------CCeEEEecCCCCCCHHHHHHH
Confidence 99986421 1123333332 111 245788999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 159 l~~~~~ 164 (166)
T 2ce2_X 159 LVREIR 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.81 E-value=5.5e-20 Score=159.62 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=81.9
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
..+.+.+||++|++.++..|..|+++++++++|+|+++ ...++.....|+..+... .+++|++||+||+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~---------~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~ 122 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK---------GQAEVDAMKPWLFNIKAR--ASSSPVILVGTHL 122 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG---------CHHHHHTHHHHHHHHHHH--CTTCEEEEEEECG
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc---------chhHHHHHHHHHHHHHhh--CCCCcEEEEEECC
Confidence 57889999999999999999999999999999999852 112344445555555432 1368999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh-hHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFKLV 343 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-ni~~vf~~i 343 (358)
|+.+++.. .....-....|... . + -.....+++|||+++. ++.++|+.|
T Consensus 123 Dl~~~~~~-----------------------~~~~~~~~~~~~~~---~-~---~~~~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 123 DVSDEKQR-----------------------KACMSKITKELLNK---R-G---FPAIRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp GGCCHHHH-----------------------HHHHHHHHHHTTTC---T-T---SCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred Ccccchhh-----------------------HHHHHHHHHHHHHh---c-C---CcchhheEEEecccCchhHHHHHHHH
Confidence 99654321 00001111111100 0 0 1112347899999995 999999999
Q ss_pred HHHHHH
Q 018283 344 DETLRR 349 (358)
Q Consensus 344 ~~~i~~ 349 (358)
.+.+.+
T Consensus 173 ~~~~~~ 178 (184)
T 2zej_A 173 INESLN 178 (184)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 887764
No 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=2.8e-19 Score=154.07 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=88.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..+.|+++|+
T Consensus 49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 116 (186)
T 1mh1_A 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG 116 (186)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTSCEEEEE
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence 556788999999999999999999999999999999984 445555554 344444332 2378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+...... ..+. .......+++..+... . ..+.++++||++++||+++|+
T Consensus 117 nK~Dl~~~~~~~~~------~~~~---~~~~v~~~~~~~~~~~----~-----------~~~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 117 TKLDLRDDKDTIEK------LKEK---KLTPITYPQGLAMAKE----I-----------GAVKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp ECHHHHTCHHHHHH------HHHT---TCCCCCHHHHHHHHHH----T-----------TCSEEEECCTTTCTTHHHHHH
T ss_pred Ecccccccchhhhh------hccc---ccccCCHHHHHHHHHh----c-----------CCcEEEEecCCCccCHHHHHH
Confidence 99999754210000 0000 0000233444433211 0 113678999999999999999
Q ss_pred HHHHHHHHh
Q 018283 342 LVDETLRRR 350 (358)
Q Consensus 342 ~i~~~i~~~ 350 (358)
++.+.+++.
T Consensus 173 ~l~~~~~~~ 181 (186)
T 1mh1_A 173 EAIRAVLCP 181 (186)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHHhcc
Confidence 999988643
No 100
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=2.4e-19 Score=157.76 Aligned_cols=131 Identities=13% Similarity=0.186 Sum_probs=87.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.... .|+..+... ..++|+++|+
T Consensus 69 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 136 (201)
T 2gco_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHF--CPNVPIILVG 136 (201)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556689999999999999999999999999999999984 445555552 333333221 2478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+...... +.+.. ......+++.++... + ....++++||++++||+++|+
T Consensus 137 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 137 NKKDLRQDEHTRRE------LAKMK---QEPVRSEEGRDMANR-I--------------SAFGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp ECGGGTTCHHHHHH------HHTTT---CCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred ecHHhhcCccchhh------hcccc---cCcCCHHHHHHHHHh-C--------------CCcEEEEeeCCCCCCHHHHHH
Confidence 99999754211000 00000 001233444443211 0 112578899999999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
++.+.+++
T Consensus 193 ~i~~~~l~ 200 (201)
T 2gco_A 193 MATRAGLQ 200 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99988763
No 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=5.4e-20 Score=156.20 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=83.7
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~ 261 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....++..+... ....+.|+++|+
T Consensus 47 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 47 DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSIT----------SRQSLEELKPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETT----------CHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 456678999999999999999999999999999999985 334444444454444321 123478999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++. ....++..+.. . ..+.++++||+++.||+++|+
T Consensus 117 nK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 117 NKCDESPSRE---------------------VQSSEAEALAR-T---------------WKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp ECGGGGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred Eccccccccc---------------------cCHHHHHHHHH-H---------------hCCeEEEecCCCCcCHHHHHH
Confidence 9999965421 11222222211 1 125678899999999999999
Q ss_pred HHHHHHH
Q 018283 342 LVDETLR 348 (358)
Q Consensus 342 ~i~~~i~ 348 (358)
++.+.+.
T Consensus 160 ~l~~~~~ 166 (172)
T 2erx_A 160 ELLNLEK 166 (172)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9987653
No 102
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=2.8e-19 Score=157.92 Aligned_cols=119 Identities=15% Similarity=0.249 Sum_probs=86.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..++|++||+|
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n 133 (213)
T 3cph_A 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT----------DERTFTNIKQWFKTVNEHA-NDEAQLLLVGN 133 (213)
T ss_dssp TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHT-TTCSEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 445588999999999999999999999999999999985 3344544455555554321 24689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+.... ...+++..+.. .+ .+.++++||+++.||+++|++
T Consensus 134 K~Dl~~~~----------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 134 KSDMETRV----------------------VTADQGEALAK-EL---------------GIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp CTTCSSCC----------------------SCHHHHHHHHH-HH---------------TCCEEECBTTTTBSSHHHHHH
T ss_pred CCCCcccc----------------------cCHHHHHHHHH-Hc---------------CCEEEEEeCCCCCCHHHHHHH
Confidence 99983211 12233333321 11 145788999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 176 l~~~~~~~ 183 (213)
T 3cph_A 176 LAKLIQEK 183 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 103
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=3.9e-21 Score=168.88 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=79.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+... ...+.|++||+|
T Consensus 78 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~n 146 (199)
T 3l0i_B 78 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN 146 (199)
T ss_dssp TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CC----------CSHHHHHHHHHHHHHHSC-C-CCSEEEEC-C
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-ccCCCCEEEEEE
Confidence 556688999999999999999999999999999999984 456677777777776543 335789999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++... . ....+..+ ...+.++++||++++||+++|++
T Consensus 147 K~Dl~~~~~v~--~----------------~~~~~~~~-------------------~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 147 KCDLTTKKVVD--Y----------------TTAKEFAD-------------------SLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CSSCC--CCCC--S----------------CC-CHHHH-------------------TTTCCBCCCCC---HHHHHHHHH
T ss_pred CccCCccccCC--H----------------HHHHHHHH-------------------HcCCeEEEEECCCCCCHHHHHHH
Confidence 99996543211 0 11111110 11245678999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+.
T Consensus 190 l~~~l~ 195 (199)
T 3l0i_B 190 MAAEIK 195 (199)
T ss_dssp HTTTTT
T ss_pred HHHHHH
Confidence 987664
No 104
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=3.1e-19 Score=157.64 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=86.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+.... .+.|++||+
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~--~~~piilv~ 141 (204)
T 4gzl_A 74 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHHC--PNTPIILVG 141 (204)
T ss_dssp C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHHC--SSCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 556788899999999999999999999999999999984 455666654 4444443322 578999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..++.....+. +. .......+++..+... + ....++++||++++||+++|+
T Consensus 142 nK~Dl~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 142 TKLDLRDDKDTIEKLK------EK---KLTPITYPQGLAMAKE-I--------------GAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp ECHHHHTCHHHHHHHH------HT---TCCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred echhhccchhhhhhhh------cc---ccccccHHHHHHHHHh-c--------------CCcEEEEeeCCCCCCHHHHHH
Confidence 9999976432100000 00 0000233444443211 0 113478899999999999999
Q ss_pred HHHHHH
Q 018283 342 LVDETL 347 (358)
Q Consensus 342 ~i~~~i 347 (358)
++.+.+
T Consensus 198 ~l~~~~ 203 (204)
T 4gzl_A 198 EAIRAV 203 (204)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998754
No 105
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.80 E-value=2.5e-19 Score=159.26 Aligned_cols=118 Identities=12% Similarity=0.131 Sum_probs=83.3
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
..+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...|+..+... ...+.|++||+||+
T Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~ 127 (218)
T 4djt_A 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVT----------SRITCQNLARWVKEFQAV-VGNEAPIVVCANKI 127 (218)
T ss_dssp CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECT
T ss_pred cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECC
Confidence 3388999999999999999999999999999999985 333444444444443321 12358999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+..++. ...+.+..+ . ....+.++++||+++.||+++|+++.
T Consensus 128 Dl~~~~~---------------------~~~~~~~~~-------------~---~~~~~~~~~~Sa~~g~gv~~l~~~l~ 170 (218)
T 4djt_A 128 DIKNRQK---------------------ISKKLVMEV-------------L---KGKNYEYFEISAKTAHNFGLPFLHLA 170 (218)
T ss_dssp TCC-------------------------CCHHHHHHH-------------T---TTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred CCccccc---------------------cCHHHHHHH-------------H---HHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 9865321 112222222 0 12346789999999999999999999
Q ss_pred HHHHHh
Q 018283 345 ETLRRR 350 (358)
Q Consensus 345 ~~i~~~ 350 (358)
+.+...
T Consensus 171 ~~~~~~ 176 (218)
T 4djt_A 171 RIFTGR 176 (218)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 988653
No 106
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-19 Score=158.37 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=84.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....++..+... ....+.|+++|+
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVT----------SKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETT----------CHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 556778999999999999999999999999999999985 333444433344333221 113468999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+. ...+++..+.. . ..+.++++||++++||+++|+
T Consensus 122 nK~Dl~~~~----------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 122 NKCDETQRE----------------------VDTREAQAVAQ-E---------------WKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp ECTTCSSCS----------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred ECccCCccc----------------------cCHHHHHHHHH-H---------------hCCeEEEEecCCCCCHHHHHH
Confidence 999986421 12233333311 1 125678899999999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
++.+.+..
T Consensus 164 ~l~~~~~~ 171 (199)
T 2gf0_A 164 ELLTLETR 171 (199)
T ss_dssp HHHHHCSS
T ss_pred HHHHHHhh
Confidence 99987654
No 107
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=3.6e-18 Score=161.13 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++||+
T Consensus 199 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~ 266 (332)
T 2wkq_A 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV----------SPASFHHVRAKWYPEVRHH--CPNTPIILVG 266 (332)
T ss_dssp TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTSCEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhh--CCCCcEEEEE
Confidence 556678889999999999999999999999999999984 445565554 344444332 1378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
||+|+..+.-.... +.... ......+++.+|.... ....++++||++++||+++|+
T Consensus 267 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 267 TKLDLRDDKDTIEK------LKEKK---LTPITYPQGLAMAKEI---------------GAVKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp ECHHHHTCHHHHHH------HHHTT---CCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHH
T ss_pred Echhcccccchhhh------ccccc---cccccHHHHHHHHHHc---------------CCcEEEEecCCCCcCHHHHHH
Confidence 99999653210000 00000 0012344454442210 113678899999999999999
Q ss_pred HHHHHHHH
Q 018283 342 LVDETLRR 349 (358)
Q Consensus 342 ~i~~~i~~ 349 (358)
.+.+.+++
T Consensus 323 ~l~~~~~~ 330 (332)
T 2wkq_A 323 EAIRAVLC 330 (332)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99988864
No 108
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.78 E-value=5.6e-18 Score=148.72 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=87.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++..+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+... ...+.|+++++|
T Consensus 50 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~n 118 (199)
T 2f9l_A 50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA----------KHLTYENVERWLKELRDH-ADSNIVIMLVGN 118 (199)
T ss_dssp TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCeEEEEEE
Confidence 566788999999999999999999999999999999984 333444444555544321 224689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+...+- ....++..+... ..+.++.|||+|+.+++++|+.
T Consensus 119 K~Dl~~~~~---------------------~~~~~a~~l~~~----------------~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 119 KSDLRHLRA---------------------VPTDEARAFAEK----------------NNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CcccccccC---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999965321 123344433211 1255677999999999999999
Q ss_pred HHHHHHHh
Q 018283 343 VDETLRRR 350 (358)
Q Consensus 343 i~~~i~~~ 350 (358)
+.+.+.+.
T Consensus 162 l~~~~~~~ 169 (199)
T 2f9l_A 162 ILTEIYRI 169 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 109
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.9e-20 Score=164.92 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=83.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~ 261 (358)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|+++|+
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~ 141 (204)
T 3th5_A 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG 141 (204)
Confidence 455678899999999999999999999999999999984 344455544 344333221 2378999999
Q ss_pred eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHH
Q 018283 262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTF 340 (358)
Q Consensus 262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf 340 (358)
||+|+..+......+. ... ......+++..+.. ...+ .++++||++++||+++|
T Consensus 142 NK~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~----------------~~~~~~~~~vSA~~g~gi~~l~ 196 (204)
T 3th5_A 142 TKLDLRDDKDTIEKLK------EKK---LTPITYPQGLAMAK----------------EIGAVKYLECSALTQRGLKTVF 196 (204)
Confidence 9999975431110000 000 00011122222210 1122 56789999999999999
Q ss_pred HHHHHHHH
Q 018283 341 KLVDETLR 348 (358)
Q Consensus 341 ~~i~~~i~ 348 (358)
+++.+.++
T Consensus 197 ~~l~~~il 204 (204)
T 3th5_A 197 DEAIRAVL 204 (204)
Confidence 99987653
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=2.7e-18 Score=146.93 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=83.3
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+..+.+|||+|++.++..|..++.+++++|+|+|+++ .....+.+.+..+.. .++|+++|+||
T Consensus 52 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~ilv~nK 116 (178)
T 2lkc_A 52 VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPIIVAINK 116 (178)
T ss_dssp ETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCEEEEEET
T ss_pred eCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 345678999999999999999999999999999999752 112334444444422 36899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+..+. .++...++. .+... + ......+.++++||++++||+++|+++
T Consensus 117 ~Dl~~~~------------------------~~~~~~~~~-~~~~~-----~-~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 117 MDKPEAN------------------------PDRVMQELM-EYNLV-----P-EEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp TTSSCSC------------------------HHHHHHHHT-TTTCC-----B-TTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred ccCCcCC------------------------HHHHHHHHH-hcCcC-----h-hHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 9986421 111111110 00000 0 000123678899999999999999999
Q ss_pred HHHHHHhhhh
Q 018283 344 DETLRRRHLF 353 (358)
Q Consensus 344 ~~~i~~~~~~ 353 (358)
.+.+....++
T Consensus 166 ~~~~~~~~~~ 175 (178)
T 2lkc_A 166 LLVSEMEELK 175 (178)
T ss_dssp HHHHHHTTTT
T ss_pred HHhhhhhccc
Confidence 9988765543
No 111
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=4.9e-18 Score=144.60 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=74.4
Q ss_pred cceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283 185 SGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 256 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 256 (358)
.+..+.+|||+|++.++ .++..|++ +++++++|+|.++ .++. ..|+..+.. .++|
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~---~~~~~~~~~----~~~p 110 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LERN---LYLTLQLME----MGAN 110 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHHH---HHHHHHHHH----TTCC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhHh---HHHHHHHHh----cCCC
Confidence 45789999999999875 45577886 8999999999852 2222 334444433 2689
Q ss_pred EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283 257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336 (358)
Q Consensus 257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni 336 (358)
+++++||+|+..++... .... . +.+.+ .+.+++|||++++||
T Consensus 111 ~ilv~nK~Dl~~~~~~~-------------------~~~~---~-~~~~~---------------~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 111 LLLALNKMDLAKSLGIE-------------------IDVD---K-LEKIL---------------GVKVVPLSAAKKMGI 152 (165)
T ss_dssp EEEEEECHHHHHHTTCC-------------------CCHH---H-HHHHH---------------TSCEEECBGGGTBSH
T ss_pred EEEEEEchHhccccChh-------------------hHHH---H-HHHHh---------------CCCEEEEEcCCCCCH
Confidence 99999999997543210 1111 1 11111 134788999999999
Q ss_pred HHHHHHHHHHH
Q 018283 337 KKTFKLVDETL 347 (358)
Q Consensus 337 ~~vf~~i~~~i 347 (358)
+++|+++.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.4e-17 Score=144.88 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=76.1
Q ss_pred EEEEEecCC----------CchhhhhHhhhhcCC---cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 188 VYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 188 ~l~i~D~~G----------q~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
.+.+|||+| ++.++..|..|++++ +++|+|+|.++ ..+..+ ..++..+.. .+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~~~----~~ 134 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFLKY----YG 134 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHHHH----TT
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHHHH----cC
Confidence 589999999 899999999999887 99999999852 122211 122222222 36
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++|+||+|+..++ ......+.+.+.+. ....+.++++||++++
T Consensus 135 ~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~ 180 (195)
T 1svi_A 135 IPVIVIATKADKIPKG-----------------------KWDKHAKVVRQTLN-----------IDPEDELILFSSETKK 180 (195)
T ss_dssp CCEEEEEECGGGSCGG-----------------------GHHHHHHHHHHHHT-----------CCTTSEEEECCTTTCT
T ss_pred CCEEEEEECcccCChH-----------------------HHHHHHHHHHHHHc-----------ccCCCceEEEEccCCC
Confidence 8999999999986432 12222222222221 0123578899999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
||+++|+++.+.+
T Consensus 181 gv~~l~~~l~~~l 193 (195)
T 1svi_A 181 GKDEAWGAIKKMI 193 (195)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 113
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=9.2e-18 Score=158.00 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=88.6
Q ss_pred eccCceeeEeeccCCCCc-ccceEEEEEecCCCchh-----hhhHhhhhcCCcEEEEEEEccccccccccccccchHH--
Q 018283 166 VRTTGVVEIQFSPVGEHK-KSGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM-- 237 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~-~~~~~l~i~D~~Gq~~~-----r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~-- 237 (358)
.+|.++....+ . .+.+.+.+||++|++.+ +..|..||++++++|+|+|++ +..++.
T Consensus 36 ~~Ti~~~~~~~------~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t----------~~~s~~~l 99 (307)
T 3r7w_A 36 GATIDVEHSHL------RFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVE----------STEVLKDI 99 (307)
T ss_dssp CCCCSEEEEEE------EETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETT----------CSCHHHHH
T ss_pred CCccceEEEEE------EeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECC----------ChhhHHHH
Confidence 46777666554 2 24789999999999999 889999999999999999985 334443
Q ss_pred -HHHHHHHHHHcCCCCCCCcEEEEeeCCCchh--hhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcC
Q 018283 238 -ETKELFDWVLKQPCFEKTSFMLFLNKFDIFE--KKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314 (358)
Q Consensus 238 -~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~--eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~ 314 (358)
.+..++..+... .+++|++|++||+|+.. ++... + ....+++.++ ... ..
T Consensus 100 ~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~--------~---------~v~~~~~~~~-----~~~---~g 152 (307)
T 3r7w_A 100 EIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREEL--------F---------QIMMKNLSET-----SSE---FG 152 (307)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHH--------H---------HHHHHHHHHH-----HHT---TT
T ss_pred HHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHH--------H---------HHHHHHHHHH-----HHH---cC
Confidence 334445554332 34789999999999965 22100 0 0001222222 110 00
Q ss_pred CCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283 315 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 315 ~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
-..+.+++|||++ .++.++|..+...++
T Consensus 153 -----~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 153 -----FPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp -----CCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred -----CCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 0026789999999 899999999877653
No 114
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.75 E-value=2.9e-17 Score=143.44 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=83.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
++..+.+.+||++|+++++..|..|+++++++++|+|++ +..++.+...|+..+... ...+.|+++++|
T Consensus 74 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~n 142 (191)
T 1oix_A 74 DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLKELRDH-ADSNIVIMLVGN 142 (191)
T ss_dssp TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEE
Confidence 556678889999999999999999999999999999984 233344434455444321 123679999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|.|+.+.+. .....+..+..+ ..+.++.|||+|+.+++++|+.
T Consensus 143 K~Dl~~~~~---------------------~~~~~a~~l~~~----------------~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 143 KSDLRHLRA---------------------VPTDEARAFAEK----------------NGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965321 123444443211 1255677999999999999999
Q ss_pred HHHHH
Q 018283 343 VDETL 347 (358)
Q Consensus 343 i~~~i 347 (358)
+.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.74 E-value=1.1e-17 Score=145.03 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=76.7
Q ss_pred eEEEEEecCC----------CchhhhhHhhhhcCC---cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 187 EVYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 187 ~~l~i~D~~G----------q~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
..+.+|||+| ++.++..|..|++++ +++++|+|.++ ...........++...
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~--------~~~~~~~~~~~~~~~~------- 132 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRI--------PPQDSDLMMVEWMKSL------- 132 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS--------CCCHHHHHHHHHHHHT-------
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCC--------CCCHHHHHHHHHHHHc-------
Confidence 4578999999 888999999999877 89999999742 1112222223333322
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++|+||+|+..+. ......+.+...+.. ...+.++++||+++
T Consensus 133 ~~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~ 178 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMS-----------------------ERAKKLEEHRKVFSK-----------YGEYTIIPTSSVTG 178 (195)
T ss_dssp TCCEEEEEECGGGSCGG-----------------------GHHHHHHHHHHHHHS-----------SCCSCEEECCTTTC
T ss_pred CCCEEEEEEChhcCChH-----------------------HHHHHHHHHHHHHhh-----------cCCCceEEEecCCC
Confidence 58999999999986431 122222222222221 12356888999999
Q ss_pred hhHHHHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDETLR 348 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~ 348 (358)
+||+++|+++.+.+.
T Consensus 179 ~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 179 EGISELLDLISTLLK 193 (195)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998774
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=1.1e-16 Score=143.50 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=80.7
Q ss_pred cccceEEEEEecCCC------chh---hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 183 KKSGEVYRLFDVGGQ------RNE---RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq------~~~---r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
......+.+|||+|+ +.. ...+..++..++++|||+|+++- ..-.......++..+... ..
T Consensus 72 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~s~~~~~~~~~~~~l~~~--~~ 141 (228)
T 2qu8_A 72 DHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQ--------CGLTIKEQINLFYSIKSV--FS 141 (228)
T ss_dssp EETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCT--------TSSCHHHHHHHHHHHHTC--C-
T ss_pred ecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccc--------cCcchHHHHHHHHHHHHh--hc
Confidence 345688999999999 331 23345678899999999998631 111134456667666543 34
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++|+||+|+...+. ...+ .......+... ....+.++++||+++
T Consensus 142 ~~piilv~nK~Dl~~~~~---------------------~~~~--~~~~~~~~~~~---------~~~~~~~~~~SA~~g 189 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNMDS---------------------LSID--NKLLIKQILDN---------VKNPIKFSSFSTLTG 189 (228)
T ss_dssp CCCEEEEEECGGGCC--C---------------------CCHH--HHHHHHHHHHH---------CCSCEEEEECCTTTC
T ss_pred CCcEEEEEeCcccCCchh---------------------hHHH--HHHHHHHHHHh---------cCCCceEEEEecccC
Confidence 789999999999965321 0001 00111112111 011267889999999
Q ss_pred hhHHHHHHHHHHHHHHh
Q 018283 334 KLVKKTFKLVDETLRRR 350 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~~ 350 (358)
+||.++|+++.+.+.+.
T Consensus 190 ~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 190 VGVEQAKITACELLKND 206 (228)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998754
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.72 E-value=1.8e-17 Score=139.33 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=72.7
Q ss_pred ccceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283 184 KSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 256 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 256 (358)
..+..+.+||++|+.. ++..|..++++++++|+|+|.++- ..... .++...+.. .+.|
T Consensus 46 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~---~~~~~~~~~---~~~p 110 (161)
T 2dyk_A 46 TDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE---------LTQAD---YEVAEYLRR---KGKP 110 (161)
T ss_dssp ETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC---------CCHHH---HHHHHHHHH---HTCC
T ss_pred eCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc---------ccHhH---HHHHHHHHh---cCCC
Confidence 3456889999999987 577888999999999999998531 11111 122222221 3689
Q ss_pred EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhh
Q 018283 257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL 335 (358)
Q Consensus 257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~n 335 (358)
+++|+||+|+.+++.. . .++ .. ..+ .++++||+++.|
T Consensus 111 ~ilv~nK~Dl~~~~~~---~------~~~---------------------~~------------~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 111 VILVATKVDDPKHELY---L------GPL---------------------YG------------LGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEECCCSGGGGGG---C------GGG---------------------GG------------GSSCSCEECBTTTTBS
T ss_pred EEEEEECcccccchHh---H------HHH---------------------Hh------------CCCCCeEEEecccCCC
Confidence 9999999999764210 0 000 00 001 357899999999
Q ss_pred HHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETL 347 (358)
Q Consensus 336 i~~vf~~i~~~i 347 (358)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999988753
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=5.4e-17 Score=140.37 Aligned_cols=113 Identities=13% Similarity=0.160 Sum_probs=79.2
Q ss_pred cccceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|++.++ ..|..|+. +++++++|+|.+. +.....++..+.. .+
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------------~~~~~~~~~~~~~----~~ 112 (188)
T 2wjg_A 50 EYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-------------LERNLYLTLQLME----MG 112 (188)
T ss_dssp EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-------------HHHHHHHHHHHHT----TT
T ss_pred EeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-------------HHHHHHHHHHHHh----cC
Confidence 4456889999999999875 56888886 5999999999742 2333445555543 36
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++++||+|+..++... ....+ +.+.+ .+.++++||++++
T Consensus 113 ~piilv~nK~Dl~~~~~~~-------------------~~~~~----~~~~~---------------~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 113 ANLLLALNKMDLAKSLGIE-------------------IDVDK----LEKIL---------------GVKVVPLSAAKKM 154 (188)
T ss_dssp CCEEEEEECHHHHHHTTCC-------------------CCHHH----HHHHH---------------TSCEEECBGGGTB
T ss_pred CCEEEEEEhhhccccccch-------------------HHHHH----HHHHh---------------CCCeEEEEecCCC
Confidence 8999999999997653210 11111 11111 1457889999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 018283 335 LVKKTFKLVDETLRRR 350 (358)
Q Consensus 335 ni~~vf~~i~~~i~~~ 350 (358)
||.++|+++.+.+...
T Consensus 155 ~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 155 GIEELKKAISIAVKDK 170 (188)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887543
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=154.81 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=81.7
Q ss_pred cccceEEEEEe-----------------------cCCCchhhhhHhhhhc---------------------CCcEEEEEE
Q 018283 183 KKSGEVYRLFD-----------------------VGGQRNERRKWIHLFE---------------------GVSAVIFCA 218 (358)
Q Consensus 183 ~~~~~~l~i~D-----------------------~~Gq~~~r~~w~~y~~---------------------~~~~iIfv~ 218 (358)
+...+.+.+|| ++||++++.+|..||+ +++++|+|+
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 45678999999 9999999999999998 899999999
Q ss_pred Ecccccccccccccc--chHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHH
Q 018283 219 AISEYDQTLFEDEQK--NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIE 296 (358)
Q Consensus 219 dls~~d~~~~~~~~~--~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~ 296 (358)
|++ +. .++.....|+..+.......++|++||+||+|+..++. ++
T Consensus 171 D~t----------~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-----------------------v~ 217 (255)
T 3c5h_A 171 DVS----------RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-----------------------IR 217 (255)
T ss_dssp ECB----------C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-----------------------HH
T ss_pred ECC----------CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-----------------------HH
Confidence 984 33 55666566666554321124689999999999854321 12
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283 297 NAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 348 (358)
Q Consensus 297 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~ 348 (358)
++.++.. . ...+.++++||+++.||+++|+++.+.+.
T Consensus 218 ~~~~~~~----~-----------~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 218 DAHTFAL----S-----------KKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHH----T-----------SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHH----h-----------cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 2222211 0 11356789999999999999999988763
No 120
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.70 E-value=7e-17 Score=163.13 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=78.5
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
+...+.+.+||++|++.++..+..|+++++++|+|+|++. .+.+..+...+.... .+.|++||+|
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~~~~~~l~~~~-----~~~pvilV~N 158 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKHYWLRHIEKYG-----GKSPVIVVMN 158 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHHHHHHHHHHHS-----SSCCEEEEEC
T ss_pred CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHHHHHHHHHHhC-----CCCCEEEEEE
Confidence 4567899999999999999999999999999999999853 244444444444431 3689999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..++. ...+++.++ +. ...+.++.+||++++||+++|+.
T Consensus 159 K~Dl~~~~~---------------------v~~~~~~~~----~~------------~~~~~~~~vSA~~g~gi~eL~~~ 201 (535)
T 3dpu_A 159 KIDENPSYN---------------------IEQKKINER----FP------------AIENRFHRISCKNGDGVESIAKS 201 (535)
T ss_dssp CTTTCTTCC---------------------CCHHHHHHH----CG------------GGTTCEEECCC-----CTTHHHH
T ss_pred CCCcccccc---------------------cCHHHHHHH----HH------------hcCCceEEEecCcccCHHHHHHH
Confidence 999864321 122222222 11 11234788999999999999999
Q ss_pred HHHHHHH
Q 018283 343 VDETLRR 349 (358)
Q Consensus 343 i~~~i~~ 349 (358)
+.+.+..
T Consensus 202 l~~~~~~ 208 (535)
T 3dpu_A 202 LKSAVLH 208 (535)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9988754
No 121
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=5.2e-17 Score=139.49 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=70.9
Q ss_pred cceEEEEEecCCCchhh---------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 185 SGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r---------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
.+..+.+|||+|++.+. +.| .++++++++|+|+|.++.. +.. ...|+..+... ...++
T Consensus 50 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~~-------s~~----~~~~~~~~~~~-~~~~~ 116 (172)
T 2gj8_A 50 DGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTTD-------AVD----PAEIWPEFIAR-LPAKL 116 (172)
T ss_dssp TTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTCC-------CCS----HHHHCHHHHHH-SCTTC
T ss_pred CCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCCC-------CHH----HHHHHHHHHHh-cccCC
Confidence 44678999999997532 122 4689999999999986421 111 12344444332 12468
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++|+||+|+..+... +. . ...+.+++|||++++|
T Consensus 117 p~ilv~NK~Dl~~~~~~--------~~-~-----------------------------------~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 117 PITVVRNKADITGETLG--------MS-E-----------------------------------VNGHALIRLSARTGEG 152 (172)
T ss_dssp CEEEEEECHHHHCCCCE--------EE-E-----------------------------------ETTEEEEECCTTTCTT
T ss_pred CEEEEEECccCCcchhh--------hh-h-----------------------------------ccCCceEEEeCCCCCC
Confidence 99999999998543110 00 0 0125678899999999
Q ss_pred HHHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETLR 348 (358)
Q Consensus 336 i~~vf~~i~~~i~ 348 (358)
|+++|+++.+.+-
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.68 E-value=3.1e-17 Score=141.79 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=72.4
Q ss_pred EEEEEecCC-----------CchhhhhHhhhhcC-CcEEEEEEEccccccccccccccchHHHHH-------------HH
Q 018283 188 VYRLFDVGG-----------QRNERRKWIHLFEG-VSAVIFCAAISEYDQTLFEDEQKNRMMETK-------------EL 242 (358)
Q Consensus 188 ~l~i~D~~G-----------q~~~r~~w~~y~~~-~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-------------~~ 242 (358)
.+.+|||+| ++.++..|..|+++ ++++++|+++. +..++.+.. ..
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~----------d~~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVV----------DGKAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEE----------ETTHHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEE----------cchhhhhHHHhhhccCccHHHHHH
Confidence 689999999 88999999999987 66555555542 122222221 12
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce
Q 018283 243 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV 322 (358)
Q Consensus 243 ~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 322 (358)
+..+.. .++|+++|+||+|+..++ .+..+.+.+++...+ ....
T Consensus 115 ~~~~~~----~~~piilv~nK~Dl~~~~-------------------------~~~~~~~~~~~~~~~--------~~~~ 157 (190)
T 2cxx_A 115 YQFLRE----LDIPTIVAVNKLDKIKNV-------------------------QEVINFLAEKFEVPL--------SEID 157 (190)
T ss_dssp HHHHHH----TTCCEEEEEECGGGCSCH-------------------------HHHHHHHHHHHTCCG--------GGHH
T ss_pred HHHHHh----cCCceEEEeehHhccCcH-------------------------HHHHHHHHHHhhhhh--------hccC
Confidence 222211 368999999999986432 111112222221000 0001
Q ss_pred EEEEEeeccChhhHHHHHHHHHHHHHHhhh
Q 018283 323 FKIYRTTALDPKLVKKTFKLVDETLRRRHL 352 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~ 352 (358)
..++++||++++||+++|+++.+.+.+..-
T Consensus 158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 158 KVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred CcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 346889999999999999999998876543
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.68 E-value=3.5e-16 Score=139.18 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=79.8
Q ss_pred ccceEEEEEecCC----------CchhhhhHhhhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 184 KSGEVYRLFDVGG----------QRNERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 184 ~~~~~l~i~D~~G----------q~~~r~~w~~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
..+..+.+|||+| ++.++..+..|+++ ++++|||+|.++ ... .....++..+..
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~---------~~~--~~~~~~~~~l~~-- 142 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR---------PLT--ELDRRMIEWFAP-- 142 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS---------CCC--HHHHHHHHHHGG--
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC---------CCC--HHHHHHHHHHHh--
Confidence 4567899999999 56678888888887 677999999752 111 112233333322
Q ss_pred CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283 251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 330 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA 330 (358)
.+.|+++|+||+|+..... ..+..+.+.+.+...... . ....+.++.+||
T Consensus 143 --~~~p~i~v~nK~Dl~~~~~-----------------------~~~~~~~~~~~l~~~~~~--~---~~~~~~~~~~SA 192 (223)
T 4dhe_A 143 --TGKPIHSLLTKCDKLTRQE-----------------------SINALRATQKSLDAYRDA--G---YAGKLTVQLFSA 192 (223)
T ss_dssp --GCCCEEEEEECGGGSCHHH-----------------------HHHHHHHHHHHHHHHHHH--T---CCSCEEEEEEBT
T ss_pred --cCCCEEEEEeccccCChhh-----------------------HHHHHHHHHHHHHhhhhc--c---cCCCCeEEEeec
Confidence 3689999999999865321 122223333333222100 0 023467889999
Q ss_pred cChhhHHHHHHHHHHHHHH
Q 018283 331 LDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 331 ~d~~ni~~vf~~i~~~i~~ 349 (358)
++++||.++|+++.+.+..
T Consensus 193 ~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 193 LKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TTTBSHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHhcCc
Confidence 9999999999999988754
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=1.8e-17 Score=147.12 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=59.9
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcC----CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC---CCCCCcE
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSF 257 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~----~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~---~~~~~~i 257 (358)
....+.+||++|++.++..|..|+++ ++++|||+|.+ .+..++.....++..++... ...++|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDI 123 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT---------SCTTCCHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECC---------CChHHHHHHHHHHHHHHhcccccccCCCCE
Confidence 55688999999999999999999988 89999999984 13455666666666665432 2247899
Q ss_pred EEEeeCCCchhh
Q 018283 258 MLFLNKFDIFEK 269 (358)
Q Consensus 258 ilv~NK~Dl~~e 269 (358)
++++||+|+..+
T Consensus 124 ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 124 LIACNKSELFTA 135 (218)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEEchHhccc
Confidence 999999999754
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=6.5e-16 Score=142.88 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=74.6
Q ss_pred ceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283 186 GEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 257 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i 257 (358)
+..+.+|||+|+++++ ..+..|+. +++++|+|+|.++ .++ ...++..+.. .++|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence 6789999999999886 67888887 5999999999842 222 2344444443 26899
Q ss_pred EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
++++||+|+.+.+... .+... +.+.+ .+.++.|||++++||+
T Consensus 111 ilv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKK-------------------INVDK----LSYHL---------------GVPVVATSALKQTGVD 152 (272)
T ss_dssp EEEEECHHHHHHTTCC-------------------CCHHH----HHHHH---------------TSCEEECBTTTTBSHH
T ss_pred EEEEEChhhCCcCCcH-------------------HHHHH----HHHHc---------------CCCEEEEEccCCCCHH
Confidence 9999999997653210 11111 11111 1446789999999999
Q ss_pred HHHHHHHHHH
Q 018283 338 KTFKLVDETL 347 (358)
Q Consensus 338 ~vf~~i~~~i 347 (358)
++|+++.+.+
T Consensus 153 el~~~i~~~~ 162 (272)
T 3b1v_A 153 QVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 126
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=9e-16 Score=140.87 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred cccceEEEEEecCCCchhhhhH------hhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKW------IHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w------~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|+..++..| ..|+ .+++++|+|+|.++ .++ .+.++..+... +
T Consensus 48 ~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~----------~~~---~~~~~~~l~~~----~ 110 (258)
T 3a1s_A 48 TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN----------PEQ---SLYLLLEILEM----E 110 (258)
T ss_dssp EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS----------CHH---HHHHHHHHHTT----T
T ss_pred EECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc----------hhh---HHHHHHHHHhc----C
Confidence 4567899999999999887644 6676 58999999999853 222 23455555442 6
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++++||+|+.+++-.. .+..+ +.+.+ .+.++.|||++++
T Consensus 111 ~pvilv~NK~Dl~~~~~i~-------------------~~~~~----l~~~l---------------g~~vi~~SA~~g~ 152 (258)
T 3a1s_A 111 KKVILAMTAIDEAKKTGMK-------------------IDRYE----LQKHL---------------GIPVVFTSSVTGE 152 (258)
T ss_dssp CCEEEEEECHHHHHHTTCC-------------------BCHHH----HHHHH---------------CSCEEECCTTTCT
T ss_pred CCEEEEEECcCCCCccchH-------------------HHHHH----HHHHc---------------CCCEEEEEeeCCc
Confidence 8999999999997653210 11111 11111 2457889999999
Q ss_pred hHHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETLR 348 (358)
Q Consensus 335 ni~~vf~~i~~~i~ 348 (358)
||.++|+.+.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988653
No 127
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=132.40 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=60.0
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcC----CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC---CCCCCcE
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSF 257 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~----~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~---~~~~~~i 257 (358)
..+.+.+|||+|++.++..|..|+.+ ++++|||+|.+ .+..++.+...++..++... ...++|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 159 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDI 159 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETT---------CCHHHHHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECC---------CCchhHHHHHHHHHHHHhhhhhccccCCCE
Confidence 45678999999999999999999987 89999999973 24566777777777665432 2247899
Q ss_pred EEEeeCCCchhh
Q 018283 258 MLFLNKFDIFEK 269 (358)
Q Consensus 258 ilv~NK~Dl~~e 269 (358)
++|+||+|+..+
T Consensus 160 ilv~nK~Dl~~~ 171 (193)
T 2ged_A 160 LIACNKSELFTA 171 (193)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEEchHhcCC
Confidence 999999999653
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.61 E-value=4.8e-15 Score=137.18 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=73.8
Q ss_pred cccceEEEEEecCCCchhh----------hhHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 183 KKSGEVYRLFDVGGQRNER----------RKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r----------~~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
...+..+.+|||+|+..++ ..+..|+ ++++++|+|+|.++ .++... +...+...
T Consensus 46 ~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~---~~~~l~~~- 111 (274)
T 3i8s_A 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLY---LTLQLLEL- 111 (274)
T ss_dssp ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHH---HHHHHHHH-
T ss_pred EeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHH---HHHHHHhc-
Confidence 4455688999999998876 4456665 79999999999742 233333 33333221
Q ss_pred CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283 251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 330 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA 330 (358)
+.|+++++||+|+.+++-.. ...+. +.+.+ .+.++.+||
T Consensus 112 ---~~p~ivv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~~i~~SA 150 (274)
T 3i8s_A 112 ---GIPCIVALNMLDIAEKQNIR-------------------IEIDA----LSARL---------------GCPVIPLVS 150 (274)
T ss_dssp ---TCCEEEEEECHHHHHHTTEE-------------------ECHHH----HHHHH---------------TSCEEECCC
T ss_pred ---CCCEEEEEECccchhhhhHH-------------------HHHHH----HHHhc---------------CCCEEEEEc
Confidence 68999999999997653211 11111 11111 145788999
Q ss_pred cChhhHHHHHHHHHHHH
Q 018283 331 LDPKLVKKTFKLVDETL 347 (358)
Q Consensus 331 ~d~~ni~~vf~~i~~~i 347 (358)
++++||+++|+.+.+.+
T Consensus 151 ~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYK 167 (274)
T ss_dssp GGGHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.61 E-value=7.4e-15 Score=135.47 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred cccceEEEEEecCCCchhhh------hHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERR------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~------~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+||++|+..+.. .+..|+ .+++++|+|+|.+. ......++..+... ..
T Consensus 46 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~-------------~~~~~~~~~~~~~~---~~ 109 (271)
T 3k53_A 46 EYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC-------------LMRNLFLTLELFEM---EV 109 (271)
T ss_dssp EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG-------------HHHHHHHHHHHHHT---TC
T ss_pred EECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc-------------chhhHHHHHHHHhc---CC
Confidence 44567799999999998877 788888 78999999999742 23345555555543 23
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++++||+|+.+.+-.. .+.. -+..++ .+.++.|||+++.
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~-------------------~~~~----~l~~~l---------------g~~~~~~Sa~~g~ 151 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAK-------------------IDIK----KMRKEL---------------GVPVIPTNAKKGE 151 (271)
T ss_dssp CSEEEEEECHHHHHHHTCC-------------------CCHH----HHHHHH---------------SSCEEECBGGGTB
T ss_pred CCEEEEEEChhcCcccccH-------------------HHHH----HHHHHc---------------CCcEEEEEeCCCC
Confidence 8999999999997653211 1111 112221 1346789999999
Q ss_pred hHHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETLR 348 (358)
Q Consensus 335 ni~~vf~~i~~~i~ 348 (358)
|+.++|+.+.+.+.
T Consensus 152 gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 152 GVEELKRMIALMAE 165 (271)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887764
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.61 E-value=3.2e-15 Score=137.03 Aligned_cols=109 Identities=10% Similarity=0.023 Sum_probs=75.1
Q ss_pred cccceEEEEEecCCCchhhh----------hHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 183 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~----------~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
...+..+.+|||+|+..++. .+..|+ ++++++|+|+|.+ + ......+...+..
T Consensus 44 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas----------~---~~~~~~l~~~l~~-- 108 (256)
T 3iby_A 44 LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDAC----------H---LERHLYLTSQLFE-- 108 (256)
T ss_dssp EETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGG----------G---HHHHHHHHHHHTT--
T ss_pred EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCC----------C---chhHHHHHHHHHH--
Confidence 44566899999999988875 677888 8999999999974 2 2223334444432
Q ss_pred CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283 251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 330 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA 330 (358)
.+.|+++++||+|+.+.+-.. ..... +.+.+ .+.++.+||
T Consensus 109 --~~~pvilv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~vi~~SA 148 (256)
T 3iby_A 109 --LGKPVVVALNMMDIAEHRGIS-------------------IDTEK----LESLL---------------GCSVIPIQA 148 (256)
T ss_dssp --SCSCEEEEEECHHHHHHTTCE-------------------ECHHH----HHHHH---------------CSCEEECBG
T ss_pred --cCCCEEEEEEChhcCCcCCcH-------------------HHHHH----HHHHc---------------CCCEEEEEC
Confidence 268999999999997653110 11111 22221 245788999
Q ss_pred cChhhHHHHHHHHHHH
Q 018283 331 LDPKLVKKTFKLVDET 346 (358)
Q Consensus 331 ~d~~ni~~vf~~i~~~ 346 (358)
++++|++++|+.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.58 E-value=1.4e-14 Score=143.82 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=67.2
Q ss_pred cccceEEEEEecCCCchhhhhH--------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w--------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|++.++..| ..++++++++|+|+|.++.. ....+.....++..+ .+
T Consensus 277 ~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------s~~~~~~~~~~l~~l------~~ 343 (476)
T 3gee_A 277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTER-------LDDELTEIRELKAAH------PA 343 (476)
T ss_dssp EETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCS-------SGGGHHHHHHHHHHC------TT
T ss_pred EECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCc-------chhhhHHHHHHHHhc------CC
Confidence 4466889999999998876554 44789999999999986421 222233444444443 26
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
.|+++|+||+|+..... ... + .+.... ...++.+||++++
T Consensus 344 ~piIvV~NK~Dl~~~~~-----------------------~~~--~----~l~~~~-----------~~~~i~vSAktg~ 383 (476)
T 3gee_A 344 AKFLTVANKLDRAANAD-----------------------ALI--R----AIADGT-----------GTEVIGISALNGD 383 (476)
T ss_dssp SEEEEEEECTTSCTTTH-----------------------HHH--H----HHHHHH-----------TSCEEECBTTTTB
T ss_pred CCEEEEEECcCCCCccc-----------------------hhH--H----HHHhcC-----------CCceEEEEECCCC
Confidence 89999999999864321 110 1 111110 0236779999999
Q ss_pred hHHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETLR 348 (358)
Q Consensus 335 ni~~vf~~i~~~i~ 348 (358)
||+++|+++.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988775
No 132
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.57 E-value=2.5e-14 Score=134.51 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=76.1
Q ss_pred ceEEEEEecCCCchh----------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 186 GEVYRLFDVGGQRNE----------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~----------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
+..+.+|||+|+... ...+..+++++|++|||+|.++ .....+...|+..+.. .+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~~----~~~ 123 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIKP----LNK 123 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTGG----GCC
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHHh----cCC
Confidence 788999999999554 4778889999999999999852 2222232223444332 368
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++|+||+|+...+ ....+..+.+.+.+. ....++.+||+++.|
T Consensus 124 pvilV~NK~Dl~~~~----------------------~~~~~~~~~l~~~~~-------------~~~~i~~vSA~~g~g 168 (308)
T 3iev_A 124 PVIVVINKIDKIGPA----------------------KNVLPLIDEIHKKHP-------------ELTEIVPISALKGAN 168 (308)
T ss_dssp CEEEEEECGGGSSSG----------------------GGGHHHHHHHHHHCT-------------TCCCEEECBTTTTBS
T ss_pred CEEEEEECccCCCCH----------------------HHHHHHHHHHHHhcc-------------CCCeEEEEeCCCCCC
Confidence 999999999986211 112222333332221 123467899999999
Q ss_pred HHHHHHHHHHHH
Q 018283 336 VKKTFKLVDETL 347 (358)
Q Consensus 336 i~~vf~~i~~~i 347 (358)
+.++|+.+.+.+
T Consensus 169 v~~L~~~l~~~l 180 (308)
T 3iev_A 169 LDELVKTILKYL 180 (308)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999988765
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.56 E-value=5.1e-15 Score=146.61 Aligned_cols=121 Identities=13% Similarity=0.161 Sum_probs=84.8
Q ss_pred cccceEEEEEecCC----------CchhhhhHhh-hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGG----------QRNERRKWIH-LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~G----------q~~~r~~w~~-y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.+|||+| ++.++..+.. |++.++++|+|+|.++ ... .....++..+..
T Consensus 239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~--------~~~---~~~~~~~~~~~~--- 304 (456)
T 4dcu_A 239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE--------GII---EQDKRIAGYAHE--- 304 (456)
T ss_dssp EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT--------CCC---HHHHHHHHHHHH---
T ss_pred EECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC--------CcC---HHHHHHHHHHHH---
Confidence 34556899999999 8888888765 7899999999999752 111 122333333333
Q ss_pred CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 331 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~ 331 (358)
.+.|++||+||+|+.+++. ...+++.+++.+.+... ..+.++++||+
T Consensus 305 -~~~~~ilv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~~~~~SA~ 351 (456)
T 4dcu_A 305 -AGKAVVIVVNKWDAVDKDE---------------------STMKEFEENIRDHFQFL-----------DYAPILFMSAL 351 (456)
T ss_dssp -TTCEEEEEEECGGGSCCCS---------------------SHHHHHHHHHHHHCGGG-----------TTSCEEECCTT
T ss_pred -cCCCEEEEEEChhcCCCch---------------------HHHHHHHHHHHHhcccC-----------CCCCEEEEcCC
Confidence 3689999999999864311 33455666665554322 12457889999
Q ss_pred ChhhHHHHHHHHHHHHHHh
Q 018283 332 DPKLVKKTFKLVDETLRRR 350 (358)
Q Consensus 332 d~~ni~~vf~~i~~~i~~~ 350 (358)
+++||.++|+.+.+.+.+.
T Consensus 352 ~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 352 TKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp TCTTGGGHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999999877543
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-14 Score=142.56 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=81.8
Q ss_pred cccceEEEEEecCCC----------chhhhhHh-hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGGQ----------RNERRKWI-HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq----------~~~r~~w~-~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.+|||+|+ +.++..+. .+++.++++|+|+|.++ .... ....++..+..
T Consensus 219 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~-~~~~~~~~~~~--- 284 (436)
T 2hjg_A 219 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIE-QDKRIAGYAHE--- 284 (436)
T ss_dssp EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCH-HHHHHHHHHHH---
T ss_pred EECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcH-HHHHHHHHHHH---
Confidence 334567999999998 66666655 48899999999999853 1122 22345554433
Q ss_pred CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 331 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~ 331 (358)
.++|+++++||+|+.+++. ...++..+.+...+... ..+.++++||+
T Consensus 285 -~~~~iiiv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~l~~~-----------~~~~~~~~SA~ 331 (436)
T 2hjg_A 285 -AGKAVVIVVNKWDAVDKDE---------------------STMKEFEENIRDHFQFL-----------DYAPILFMSAL 331 (436)
T ss_dssp -TTCEEEEEEECGGGSCCCT---------------------THHHHHHHHHHHHCGGG-----------TTSCEEECCTT
T ss_pred -cCCcEEEEEECccCCCcch---------------------HHHHHHHHHHHHhcccC-----------CCCCEEEEecc
Confidence 3689999999999864311 12334444444444321 12457889999
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 018283 332 DPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 332 d~~ni~~vf~~i~~~i~~ 349 (358)
+++||.++|+.+.+.+.+
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.53 E-value=6e-14 Score=139.47 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=74.0
Q ss_pred cccceEEEEEecCCCc-hhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 183 KKSGEVYRLFDVGGQR-NER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~-~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
...+..+.+|||+|++ .+. ..+..|+++++++|+|+|.++- ....+ .++++.+ .
T Consensus 287 ~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~----------~s~~~-~~il~~l------~ 349 (482)
T 1xzp_A 287 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP----------LDEED-RKILERI------K 349 (482)
T ss_dssp EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC----------CCHHH-HHHHHHH------T
T ss_pred ecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC----------CCHHH-HHHHHHh------c
Confidence 4456789999999998 543 3456789999999999998531 12211 2333332 2
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++|+||+|+..+ ...++..++ . ...+.++.+||+++
T Consensus 350 ~~piivV~NK~DL~~~-----------------------~~~~~~~~~-----~------------~~~~~~i~iSAktg 389 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEK-----------------------INEEEIKNK-----L------------GTDRHMVKISALKG 389 (482)
T ss_dssp TSSEEEEEEECSSCCC-----------------------CCHHHHHHH-----H------------TCSTTEEEEEGGGT
T ss_pred CCCEEEEEECcccccc-----------------------cCHHHHHHH-----h------------cCCCcEEEEECCCC
Confidence 6799999999998532 111222221 0 01123678999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDETLRR 349 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~ 349 (358)
+||+++|+++.+.+..
T Consensus 390 ~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 390 EGLEKLEESIYRETQE 405 (482)
T ss_dssp CCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999997663
No 136
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.53 E-value=2.2e-13 Score=136.95 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=60.6
Q ss_pred cCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH
Q 018283 168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 247 (358)
Q Consensus 168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~ 247 (358)
|.......+ ...+..+.+|||+|+..|+..+..+++.++++|+|+|.++ ........+|..+.
T Consensus 69 Ti~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~ 131 (528)
T 3tr5_A 69 SVTTSVMQF------PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCR 131 (528)
T ss_dssp SSSSSEEEE------EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHH
T ss_pred eEEEeEEEE------EeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHH
Confidence 444444555 6678899999999999999999999999999999999752 11123344555543
Q ss_pred cCCCCCCCcEEEEeeCCCchh
Q 018283 248 KQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 248 ~~~~~~~~~iilv~NK~Dl~~ 268 (358)
. .++|+++|+||+|+..
T Consensus 132 ~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 132 L----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp T----TTCCEEEEEECTTSCC
T ss_pred H----cCCCEEEEEeCCCCcc
Confidence 3 2689999999999864
No 137
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.52 E-value=1.1e-13 Score=129.78 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=72.5
Q ss_pred cccceEEEEEecCCCch--------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~--------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|+.. +...+..+++++|++|||+|.++- .... ..++...+... ..+
T Consensus 51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~---------~~~~---~~~i~~~l~~~-~~~ 117 (301)
T 1wf3_A 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP---------PTPE---DELVARALKPL-VGK 117 (301)
T ss_dssp EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC---------CCHH---HHHHHHHHGGG-TTT
T ss_pred EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC---------CChH---HHHHHHHHHhh-cCC
Confidence 34568899999999976 566778899999999999998531 1111 12222222221 246
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|+++|+||+|+..+.- +..+++.. + . ....++.+||+++.
T Consensus 118 ~p~ilV~NK~Dl~~~~~-------------------------~~~~~~~~-~---~----------~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 118 VPILLVGNKLDAAKYPE-------------------------EAMKAYHE-L---L----------PEAEPRMLSALDER 158 (301)
T ss_dssp SCEEEEEECGGGCSSHH-------------------------HHHHHHHH-T---S----------TTSEEEECCTTCHH
T ss_pred CCEEEEEECcccCCchH-------------------------HHHHHHHH-h---c----------CcCcEEEEeCCCCC
Confidence 89999999999853210 01111111 1 0 01246778999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
|++++|+.+.+.+
T Consensus 159 gv~~l~~~l~~~l 171 (301)
T 1wf3_A 159 QVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhc
Confidence 9999999887643
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=2e-14 Score=141.57 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred cccceEEEEEecCCCc--------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~--------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||||++ .++..|..+++++|++|||+|.++ . ... ...++..++.. .+
T Consensus 47 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~---------~-~~~--~d~~~~~~l~~---~~ 111 (436)
T 2hjg_A 47 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE---------G-VTA--ADEEVAKILYR---TK 111 (436)
T ss_dssp TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT---------C-SCH--HHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC---------C-CCH--HHHHHHHHHHH---cC
Confidence 4456789999999996 788999999999999999999742 1 111 11233344432 36
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|++|++||+|+...... . . ++ ..+ + - -.++.+||+++.
T Consensus 112 ~pvilv~NK~D~~~~~~~---~--~----~~---------------------~~l-----g---~---~~~~~iSA~~g~ 150 (436)
T 2hjg_A 112 KPVVLAVNKLDNTEMRAN---I--Y----DF---------------------YSL-----G---F---GEPYPISGTHGL 150 (436)
T ss_dssp SCEEEEEECCCC-----C---C--C----SS---------------------GGG-----S---S---CCCEECBTTTTB
T ss_pred CCEEEEEECccCccchhh---H--H----HH---------------------HHc-----C---C---CCeEEEeCcCCC
Confidence 899999999998654210 0 0 00 000 0 0 024679999999
Q ss_pred hHHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETLR 348 (358)
Q Consensus 335 ni~~vf~~i~~~i~ 348 (358)
|+.++|+++.+.+.
T Consensus 151 gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 151 GLGDLLDAVAEHFK 164 (436)
T ss_dssp THHHHHHHHHHTGG
T ss_pred ChHHHHHHHHHhcC
Confidence 99999999887664
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.52 E-value=4.6e-14 Score=139.07 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=73.3
Q ss_pred ccceEEEEEecCCCch---------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHH-HHHHHHHHHcCCCCC
Q 018283 184 KSGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME-TKELFDWVLKQPCFE 253 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~---------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 253 (358)
..+..+.+|||||++. ++..|..|++++|++|||+|.++ ......+ ...++.. .
T Consensus 46 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~---------~~~~~d~~i~~~l~~-------~ 109 (439)
T 1mky_A 46 WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR---------GITKEDESLADFLRK-------S 109 (439)
T ss_dssp ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT---------CCCHHHHHHHHHHHH-------H
T ss_pred ECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHHHHHHHHHH-------c
Confidence 3456789999999764 57789999999999999999742 1111111 1222222 2
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHH-HHHHHHHHHHHhhhcCCCCCCCceE-EEEEeecc
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA-YEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTAL 331 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~-~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~ 331 (358)
++|++|++||+|+.+... .++ .+ |..+ .+ .++.+||+
T Consensus 110 ~~p~ilv~NK~D~~~~~~------------------------~~~~~~-----~~~l------------g~~~~~~iSA~ 148 (439)
T 1mky_A 110 TVDTILVANKAENLREFE------------------------REVKPE-----LYSL------------GFGEPIPVSAE 148 (439)
T ss_dssp TCCEEEEEESCCSHHHHH------------------------HHTHHH-----HGGG------------SSCSCEECBTT
T ss_pred CCCEEEEEeCCCCccccH------------------------HHHHHH-----HHhc------------CCCCEEEEecc
Confidence 579999999999864210 011 11 1111 01 24679999
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 018283 332 DPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 332 d~~ni~~vf~~i~~~i~~ 349 (358)
+|.|+.++|+.+.+.+..
T Consensus 149 ~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999988764
No 140
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.52 E-value=7.3e-14 Score=139.29 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=81.7
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|..+....+ +..+..+.+|||+|++.|.+.+..+++++|++|+|+|.++-.. + ...+......+.+..
T Consensus 96 GiTi~~~~~~~------~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~-~~~~~~~qt~e~~~~ 165 (483)
T 3p26_A 96 GVTVSICTSHF------STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---E-SGFDLDGQTKEHMLL 165 (483)
T ss_dssp CSSCCCCEEEE------ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHH
T ss_pred CcceEeeeEEE------ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---c-cccchhhhHHHHHHH
Confidence 34555555666 6678899999999999999999999999999999999853100 0 000001111222211
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.. ....|+++++||+|+.+... ...++..+.+...+..+- . ....+.+
T Consensus 166 ~~~---~~~~~iIvviNK~Dl~~~~~---------------------~~~~~i~~~~~~~l~~~g----~---~~~~~~~ 214 (483)
T 3p26_A 166 ASS---LGIHNLIIAMNKMDNVDWSQ---------------------QRFEEIKSKLLPYLVDIG----F---FEDNINW 214 (483)
T ss_dssp HHH---TTCCCEEEEEECGGGGTTCH---------------------HHHHHHHHHHHHHHHHHT----C---CGGGEEE
T ss_pred HHH---cCCCcEEEEEECcCcccchH---------------------HHHHHHHHHHHHHHHHcC----C---CcccceE
Confidence 111 12357999999999864210 223444455444444331 0 1224778
Q ss_pred EEeeccChhhHHH
Q 018283 326 YRTTALDPKLVKK 338 (358)
Q Consensus 326 ~~tSA~d~~ni~~ 338 (358)
+.+||++++||.+
T Consensus 215 i~iSA~~g~gi~e 227 (483)
T 3p26_A 215 VPISGFSGEGVYK 227 (483)
T ss_dssp EECCSSSCTTSSS
T ss_pred EEEeeecCCCccc
Confidence 8999999999975
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.52 E-value=1.1e-13 Score=134.81 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=78.5
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
...+.+|||+|++.+.+.+..++..+|++|+|+|.++- .......+.+..+..+ ...|+++++||+|
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~-------~~~~qt~~~~~~~~~~------~~~~iivviNK~D 140 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP-------FPQPQTREHFVALGII------GVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSC-------SSCHHHHHHHHHHHHH------TCCCEEEEEECGG
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-------CCcHHHHHHHHHHHHc------CCCCEEEEEECcc
Confidence 37899999999999999999999999999999997521 1122233333333222 1258999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
+.... ...+..+.+.+.+... ....+.++.+||++++||.++|+.+.+
T Consensus 141 l~~~~-----------------------~~~~~~~~i~~~l~~~---------~~~~~~ii~vSA~~g~gi~~L~~~l~~ 188 (403)
T 3sjy_A 141 VVSKE-----------------------EALSQYRQIKQFTKGT---------WAENVPIIPVSALHKINIDSLIEGIEE 188 (403)
T ss_dssp GSCHH-----------------------HHHHHHHHHHHHHTTS---------TTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred ccchH-----------------------HHHHHHHHHHHHHHhh---------CCCCCEEEEEECCCCcChHHHHHHHHH
Confidence 86431 1122222222222111 012356888999999999999999987
Q ss_pred HH
Q 018283 346 TL 347 (358)
Q Consensus 346 ~i 347 (358)
.+
T Consensus 189 ~l 190 (403)
T 3sjy_A 189 YI 190 (403)
T ss_dssp HS
T ss_pred hC
Confidence 65
No 142
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.51 E-value=5e-13 Score=128.17 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=77.9
Q ss_pred cccceEEEEEecCCCchhh---------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r---------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 253 (358)
...+..+.+|||+|+.... .....+...++++|+|+|++.. ..-.+.+...++..+.... .
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~--------~~~~~~~~~~~~~~i~~~~--~ 279 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEH--------CGFPLEEQIHLFEEVHGEF--K 279 (357)
T ss_dssp EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCT--------TSSCHHHHHHHHHHHHHHT--T
T ss_pred EecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCcc--------ccCCHHHHHHHHHHHHHhc--C
Confidence 3346789999999985431 2233455679999999998521 1113455556666654421 2
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++|+||+|+.... +++++.+++. . ..+.++++||+++
T Consensus 280 ~~piilV~NK~Dl~~~~-----------------------~~~~~~~~~~----~------------~~~~~~~iSA~~g 320 (357)
T 2e87_A 280 DLPFLVVINKIDVADEE-----------------------NIKRLEKFVK----E------------KGLNPIKISALKG 320 (357)
T ss_dssp TSCEEEEECCTTTCCHH-----------------------HHHHHHHHHH----H------------TTCCCEECBTTTT
T ss_pred CCCEEEEEECcccCChH-----------------------HHHHHHHHHH----h------------cCCCeEEEeCCCC
Confidence 68999999999985431 1233333322 1 1134678999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDETLRR 349 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~ 349 (358)
+||+++|+++.+.+..
T Consensus 321 ~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRP 336 (357)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988854
No 143
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.50 E-value=8.8e-15 Score=128.39 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=72.1
Q ss_pred ecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH---HHHHcCCC-CCCCcEEEEeeCC-Cch
Q 018283 193 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF---DWVLKQPC-FEKTSFMLFLNKF-DIF 267 (358)
Q Consensus 193 D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~---~~i~~~~~-~~~~~iilv~NK~-Dl~ 267 (358)
|+|||+++|+.|.+||++++++|||||.+ +..+++ +.+.+ ..+++... +.++|++|++||+ |+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSs----------D~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAE----------AHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECB----------TTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccc----------cHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 57899999999999999999999999975 334443 55555 44555543 5789999999995 774
Q ss_pred hhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 268 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 268 ~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
.+ -...+..+. ..+.. -+|.+++.-|||++|+|+.+.++|+.+.+
T Consensus 177 ~A-----------------------ms~~EI~e~-----L~L~~-------l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 177 KR-----------------------MPCFYLAHE-----LHLNL-------LNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp CB-----------------------CCHHHHHHH-----TTGGG-------GCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CC-----------------------CCHHHHHHH-----cCCcC-------CCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 32 111222211 11110 13679999999999999999999999877
Q ss_pred HHh
Q 018283 348 RRR 350 (358)
Q Consensus 348 ~~~ 350 (358)
.++
T Consensus 222 ~~k 224 (227)
T 3l82_B 222 ESK 224 (227)
T ss_dssp TTC
T ss_pred Hhh
Confidence 543
No 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.48 E-value=8.2e-13 Score=120.22 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=51.8
Q ss_pred cccceEEEEEecCCC--------chhhhhHhhhh----cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283 183 KKSGEVYRLFDVGGQ--------RNERRKWIHLF----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq--------~~~r~~w~~y~----~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~ 250 (358)
...+..+.+|||+|. +.+...+..++ ++++++|+|+|++.+. ..-...++++..+.. +
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~~~~-~ 135 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFT---------AQDQQAVRQVRDMFG-E 135 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCC---------HHHHHHHHHHHHHHC-G
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCC---------HHHHHHHHHHHHHhC-h
Confidence 456788999999997 44444444444 8999999999985321 122334556666543 2
Q ss_pred CCCCCcEEEEeeCCCchh
Q 018283 251 CFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 251 ~~~~~~iilv~NK~Dl~~ 268 (358)
...+.|++||+||.|+..
T Consensus 136 ~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 136 DVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp GGGGGEEEEEECGGGGTT
T ss_pred hhhccEEEEEEchHhcCC
Confidence 334689999999999854
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.48 E-value=2.1e-12 Score=124.07 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=73.7
Q ss_pred cceEEEEEecCCC---------chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 185 SGEVYRLFDVGGQ---------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 185 ~~~~l~i~D~~Gq---------~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
.+..+.+|||+|. +.++..+. ++..++.+++|+|.++.+. .....+..+.+++..+ ...+.
T Consensus 224 ~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~-----~~~~~~~~~~~~L~~l----~~~~~ 293 (364)
T 2qtf_A 224 NNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSEN-----LLIETLQSSFEILREI----GVSGK 293 (364)
T ss_dssp TTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHH-----HHHHHHHHHHHHHHHH----TCCSC
T ss_pred CCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcc-----hHHHHHHHHHHHHHHh----CcCCC
Confidence 3467899999997 33555544 5789999999999863110 0112222233334333 23468
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++|+||+|+...... .....+.++ ...+ ......++.+||++++|
T Consensus 294 p~ilV~NK~Dl~~~~~~--------------------~~~~~~~~l-~~~l------------~~~~~~~~~~SA~~g~g 340 (364)
T 2qtf_A 294 PILVTLNKIDKINGDLY--------------------KKLDLVEKL-SKEL------------YSPIFDVIPISALKRTN 340 (364)
T ss_dssp CEEEEEECGGGCCSCHH--------------------HHHHHHHHH-HHHH------------CSCEEEEEECBTTTTBS
T ss_pred CEEEEEECCCCCCchHH--------------------HHHHHHHHH-HHHh------------cCCCCcEEEEECCCCcC
Confidence 99999999998532100 001111111 1111 01124567899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 018283 336 VKKTFKLVDETLRRR 350 (358)
Q Consensus 336 i~~vf~~i~~~i~~~ 350 (358)
++++|+.+.+.+...
T Consensus 341 i~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 341 LELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998877543
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=6.8e-13 Score=130.71 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=78.7
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
.|..+....| ...+..+.+|||+||+.|.+.+..+++.+|++|+|+|.++-.. + ...+....+.+.+..+
T Consensus 81 iTid~~~~~~------~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e-~~~~~~~qt~e~l~~~ 150 (439)
T 3j2k_7 81 KTVEVGRAYF------ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---E-TGFEKGGQTREHAMLA 150 (439)
T ss_pred ceEEEeEEEE------ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---c-cccCCCchHHHHHHHH
Confidence 3444444555 5567799999999999999999999999999999999752100 0 0000001222222222
Q ss_pred HcCCCCCCCc-EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 247 LKQPCFEKTS-FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 247 ~~~~~~~~~~-iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
.. .++| +++++||+|+...... ....++..+.+...+..+. -+ ....+.+
T Consensus 151 ~~----~~v~~iIvviNK~Dl~~~~~~-------------------~~~~~~i~~~~~~~l~~~g----~~--~~~~~~~ 201 (439)
T 3j2k_7 151 KT----AGVKHLIVLINKMDDPTVNWS-------------------NERYEECKEKLVPFLKKVG----FN--PKKDIHF 201 (439)
T ss_pred HH----cCCCeEEEEeecCCCcccchH-------------------HHHHHHHHHHHHHHHHHhc----cc--ccCCeeE
Confidence 11 1455 9999999998532100 0111222222222222111 00 0124678
Q ss_pred EEeeccChhhHHHHHH
Q 018283 326 YRTTALDPKLVKKTFK 341 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~ 341 (358)
+.+||++|.||.++++
T Consensus 202 i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 202 MPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeeccCCcccccccc
Confidence 8899999999999655
No 147
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.48 E-value=3.7e-13 Score=130.94 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=57.3
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
.|.++....+ ......+.+|||+|++.|.+.+..+++.+|++|+|+|.++- .+..+.+.+..+
T Consensus 52 iTi~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~ 114 (397)
T 1d2e_A 52 ITINAAHVEY------STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLA 114 (397)
T ss_dssp EEEECEEEEE------ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHH
T ss_pred cEEEeeeEEe------ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHH
Confidence 3444444555 55678999999999999999999999999999999997521 112233333332
Q ss_pred HcCCCCCCCc-EEEEeeCCCch
Q 018283 247 LKQPCFEKTS-FMLFLNKFDIF 267 (358)
Q Consensus 247 ~~~~~~~~~~-iilv~NK~Dl~ 267 (358)
.. .++| +++++||+|+.
T Consensus 115 ~~----~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 115 RQ----IGVEHVVVYVNKADAV 132 (397)
T ss_dssp HH----TTCCCEEEEEECGGGC
T ss_pred HH----cCCCeEEEEEECcccC
Confidence 22 2567 78999999986
No 148
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.47 E-value=4.9e-13 Score=130.38 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=57.7
Q ss_pred cCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH
Q 018283 168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 247 (358)
Q Consensus 168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~ 247 (358)
|.......+ ......+.+|||+|++.|.+.+..+++.+|++|+|+|.++- .+....+++..+.
T Consensus 62 Ti~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~~~l~~~~ 124 (405)
T 2c78_A 62 TINTAHVEY------ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLAR 124 (405)
T ss_dssp CCSCEEEEE------ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHHHHH
T ss_pred CEEeeeeEe------ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHHHHH
Confidence 344444555 55678899999999999999999999999999999997521 1223344444332
Q ss_pred cCCCCCCCc-EEEEeeCCCch
Q 018283 248 KQPCFEKTS-FMLFLNKFDIF 267 (358)
Q Consensus 248 ~~~~~~~~~-iilv~NK~Dl~ 267 (358)
. .++| +++++||+|+.
T Consensus 125 ~----~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 125 Q----VGVPYIVVFMNKVDMV 141 (405)
T ss_dssp H----TTCCCEEEEEECGGGC
T ss_pred H----cCCCEEEEEEECcccc
Confidence 2 2567 89999999986
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.47 E-value=1.3e-13 Score=127.46 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred cccceEEEEEecCCC-------chhhhhH-------hhhhcC-------------CcEEEEEEEccccccccccccccch
Q 018283 183 KKSGEVYRLFDVGGQ-------RNERRKW-------IHLFEG-------------VSAVIFCAAISEYDQTLFEDEQKNR 235 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq-------~~~r~~w-------~~y~~~-------------~~~iIfv~dls~~d~~~~~~~~~~~ 235 (358)
++..+.+.+|||+|+ +.++.++ ..|+.. +|+++|+++-+ ....
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~----------~~~~ 130 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS----------GHGL 130 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSC----------CSSC
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCC----------CCCC
Confidence 345579999999998 4456665 666654 78999999743 1111
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCC
Q 018283 236 MMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA 315 (358)
Q Consensus 236 l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~ 315 (358)
......+++.+.. ++|+++|+||+|+.... ......+.+.+.+..
T Consensus 131 ~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~-----------------------e~~~~~~~i~~~l~~------- 175 (274)
T 3t5d_A 131 KPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE-----------------------ECQQFKKQIMKEIQE------- 175 (274)
T ss_dssp CHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH-----------------------HHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH-----------------------HHHHHHHHHHHHHHH-------
Confidence 1222444555422 68999999999985321 122222223333322
Q ss_pred CCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 316 PDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 316 ~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
..+.++.+||++++++.++++++.+.
T Consensus 176 -----~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 176 -----HKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp -----TTCCCCCC-----------CHHHHHT
T ss_pred -----cCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 12445668999999999999888764
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=3.2e-13 Score=121.93 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=51.2
Q ss_pred cccceEEEEEecCC-----------CchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGG-----------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~G-----------q~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.+|||+| ++.+++.+..++++++++|+|+|++.++. ....++.++...+...
T Consensus 74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~l~~~~~~~~~~- 143 (239)
T 3lxx_A 74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE---------EEHKATEKILKMFGER- 143 (239)
T ss_dssp EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS---------HHHHHHHHHHHHHHHH-
T ss_pred EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH---------HHHHHHHHHHHHhhhh-
Confidence 44567899999999 55677788888899999999999864321 1123333333332211
Q ss_pred CCCCcEEEEeeCCCchhh
Q 018283 252 FEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~e 269 (358)
...|++||+||+|+...
T Consensus 144 -~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 144 -ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp -HGGGEEEEEECGGGC--
T ss_pred -ccceEEEEEeCCccCCc
Confidence 13599999999998654
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.47 E-value=2.6e-13 Score=135.22 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=78.6
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.+|||+|++.+.+.+..++..+|++|+|+|.++ .......+.+.++.. .++|+++++|
T Consensus 69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~--------g~~~qt~e~l~~~~~-------~~ip~IvviN 133 (482)
T 1wb1_A 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE--------GPKTQTGEHMLILDH-------FNIPIIVVIT 133 (482)
T ss_dssp EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT--------CSCHHHHHHHHHHHH-------TTCCBCEEEE
T ss_pred EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC--------CccHHHHHHHHHHHH-------cCCCEEEEEE
Confidence 3456789999999999999999999999999999999742 111112222222221 2578899999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 342 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~ 342 (358)
|+|+..+. ..++..+.+.+.+... .. -..+.++.+||++++||.++++.
T Consensus 134 K~Dl~~~~-----------------------~~~~~~~~l~~~l~~~----~~----~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 134 KSDNAGTE-----------------------EIKRTEMIMKSILQST----HN----LKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp CTTSSCHH-----------------------HHHHHHHHHHHHHHHS----SS----GGGCCEEECCTTTCTTHHHHHHH
T ss_pred CCCcccch-----------------------hHHHHHHHHHHHHhhh----cc----cccceEEEEECcCCCCHHHHHHH
Confidence 99996421 1111122222222111 00 01245788999999999999999
Q ss_pred HHHHHH
Q 018283 343 VDETLR 348 (358)
Q Consensus 343 i~~~i~ 348 (358)
+.+.+-
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 988763
No 152
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.46 E-value=2.4e-14 Score=140.02 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=72.6
Q ss_pred EEEEEecCCCchhhhh-------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283 188 VYRLFDVGGQRNERRK-------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 260 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~-------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv 260 (358)
.+.+|||+|+..+... +..++++++++|+|+|.+ .......++.++.. . +.|+++|
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~~l~~---~----~~piIvV 146 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA----------PTPYEDDVVNLFKE---M----EIPFVVV 146 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS----------CCHHHHHHHHHHHH---T----TCCEEEE
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC----------ChHHHHHHHHHHHh---c----CCCEEEE
Confidence 8999999999877554 667999999999999962 22223333333333 2 6899999
Q ss_pred eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 340 (358)
Q Consensus 261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf 340 (358)
+||+|+..+.. . +.+..+ . ....+.++++||++++|++++|
T Consensus 147 ~NK~Dl~~~~~---------------------~--~~~~~l-----~-----------~~~g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 147 VNKIDVLGEKA---------------------E--ELKGLY-----E-----------SRYEAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp CCCCTTTTCCC---------------------T--HHHHHS-----S-----------CCTTCCCCCCSSCCTTSTTTHH
T ss_pred EeCcCCCCccH---------------------H--HHHHHH-----H-----------HHcCCCEEEEECCCCCCHHHHH
Confidence 99999865421 1 111111 0 0122456789999999999999
Q ss_pred HHHHHHHH
Q 018283 341 KLVDETLR 348 (358)
Q Consensus 341 ~~i~~~i~ 348 (358)
+.+.+.+.
T Consensus 188 ~~L~~~l~ 195 (423)
T 3qq5_A 188 KTISEILP 195 (423)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhh
Confidence 99998773
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=2.3e-13 Score=132.88 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=70.2
Q ss_pred eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
..+.+|||+||+.|.+.+......+|++|+|+|.++- .......+.+..+.. +...|+++++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-------~~~~qt~e~l~~~~~------l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP-------CPQPQTKEHLMALEI------LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC-------SSCHHHHHHHHHHHH------TTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC-------CCCchhHHHHHHHHH------cCCCeEEEEEEccCC
Confidence 6899999999999998888888899999999998521 001222233333321 123589999999999
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
..+... ....++..+++.. . ....+.++.+||++++||.++|+.+.+.
T Consensus 148 ~~~~~~-------------------~~~~~~i~~~l~~----~---------~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 148 VDEKQA-------------------EENYEQIKEFVKG----T---------IAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp SCTTTT-------------------TTHHHHHHHHHTT----S---------TTTTCCEEEC------CHHHHHHHHHHH
T ss_pred CCHHHH-------------------HHHHHHHHHHHhh----c---------CCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 643210 0122333333221 0 0123567889999999999999998875
Q ss_pred H
Q 018283 347 L 347 (358)
Q Consensus 347 i 347 (358)
+
T Consensus 196 i 196 (408)
T 1s0u_A 196 I 196 (408)
T ss_dssp S
T ss_pred C
Confidence 5
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.46 E-value=4.1e-13 Score=132.13 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=74.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHH-------HHHHHHHHHHcCCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM-------ETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~-------~~~~~~~~i~~~~~~~~~ 255 (358)
......+.+|||+|++.|...+..+++.+|++|+|+|.++ .+++ ...+.+..+.. ..-.
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~~~~~---~~~~ 145 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHIILAKT---MGLD 145 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHHHHHH---cCCC
Confidence 5667889999999999999999999999999999999752 2222 12222222111 1224
Q ss_pred cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 335 (358)
Q Consensus 256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n 335 (358)
|+++++||+|+.... + .+...++..+.+...+..+ .- ....+.++.+||++++|
T Consensus 146 ~iivviNK~Dl~~~~--------------~-----~~~~~~~~~~~i~~~~~~~----~~---~~~~~~~i~iSA~~g~~ 199 (435)
T 1jny_A 146 QLIVAVNKMDLTEPP--------------Y-----DEKRYKEIVDQVSKFMRSY----GF---NTNKVRFVPVVAPSGDN 199 (435)
T ss_dssp TCEEEEECGGGSSST--------------T-----CHHHHHHHHHHHHHHHHHT----TC---CCTTCEEEECBTTTTBT
T ss_pred eEEEEEEcccCCCcc--------------c-----cHHHHHHHHHHHHHHHHHc----CC---CcCCceEEEeecccCcc
Confidence 699999999986420 0 0011122223333333221 10 01236788999999999
Q ss_pred HHHHHH
Q 018283 336 VKKTFK 341 (358)
Q Consensus 336 i~~vf~ 341 (358)
|.++++
T Consensus 200 v~e~~~ 205 (435)
T 1jny_A 200 ITHKSE 205 (435)
T ss_dssp TTBCCS
T ss_pred cccccc
Confidence 986554
No 155
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=6.3e-13 Score=131.50 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=40.6
Q ss_pred cccceEEEEEecCCCchhhhhHh--------hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWI--------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~--------~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+|++.....+. .+++++|++|+|+|.++ .... ....++..+ . +
T Consensus 268 ~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~-~~~~i~~~l-~-----~ 330 (462)
T 3geh_A 268 VVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTT-GDQEIYEQV-K-----H 330 (462)
T ss_dssp EETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCH-HHHHHHHHH-T-----T
T ss_pred EECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCH-HHHHHHHhc-c-----C
Confidence 34567889999999977654443 36889999999999853 1111 113344433 2 3
Q ss_pred CcEEEEeeCCCchhhh
Q 018283 255 TSFMLFLNKFDIFEKK 270 (358)
Q Consensus 255 ~~iilv~NK~Dl~~ek 270 (358)
.|+++|+||+|+..+.
T Consensus 331 ~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp SCEEEEEECTTSSCGG
T ss_pred CcEEEEEECCCCCcch
Confidence 6999999999997543
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.45 E-value=4.2e-13 Score=131.06 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=75.7
Q ss_pred eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
..+.+|||+|++.|.+.+......+|++|+|+|.++- .......+.+..+..+ ...|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-------~~~~qt~e~l~~~~~~------~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP-------CPRPQTREHLMALQII------GQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-------SSCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC-------CCChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence 6899999999999988888888899999999997520 0022223333333322 23589999999999
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
..+.... ...++..+|+. .. ....+.++.+||++++||.++|+.+.+.
T Consensus 150 ~~~~~~~-------------------~~~~~i~~~l~----~~---------~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 150 VDKEKAL-------------------ENYRQIKEFIE----GT---------VAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp SCHHHHH-------------------HHHHHHHHHHT----TS---------TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCHHHHH-------------------HHHHHHHHHHH----hc---------CcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 6432100 11122222211 10 0123567889999999999999998875
Q ss_pred H
Q 018283 347 L 347 (358)
Q Consensus 347 i 347 (358)
+
T Consensus 198 ~ 198 (410)
T 1kk1_A 198 I 198 (410)
T ss_dssp S
T ss_pred C
Confidence 5
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.45 E-value=4.4e-13 Score=131.90 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=77.8
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|..+....+ ......+.+|||+||+.|.+.+..++..+|++|+|+|.++ .. +....+++..
T Consensus 89 GiTi~~~~~~~------~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~--------g~---~~qt~~~l~~ 151 (434)
T 1zun_B 89 GITIDVAYRYF------STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY--------GV---QTQTRRHSYI 151 (434)
T ss_dssp -CCCCCEEEEE------ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT--------CS---CHHHHHHHHH
T ss_pred CcEEEeeeeEe------ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC--------CC---cHHHHHHHHH
Confidence 33444444455 5567889999999999999999999999999999999852 11 1222333322
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 325 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 325 (358)
+.. ....|+++++||+|+..... ..+++..+.+...+..+ .. ....+.+
T Consensus 152 ~~~---~~~~~iIvviNK~Dl~~~~~---------------------~~~~~i~~~~~~~~~~~----g~---~~~~~~~ 200 (434)
T 1zun_B 152 ASL---LGIKHIVVAINKMDLNGFDE---------------------RVFESIKADYLKFAEGI----AF---KPTTMAF 200 (434)
T ss_dssp HHH---TTCCEEEEEEECTTTTTSCH---------------------HHHHHHHHHHHHHHHTT----TC---CCSEEEE
T ss_pred HHH---cCCCeEEEEEEcCcCCcccH---------------------HHHHHHHHHHHHHHHHh----CC---CccCceE
Confidence 211 12236999999999864100 01111122222222111 00 0134778
Q ss_pred EEeeccChhhHHHHHH
Q 018283 326 YRTTALDPKLVKKTFK 341 (358)
Q Consensus 326 ~~tSA~d~~ni~~vf~ 341 (358)
+.+||++++||.++|+
T Consensus 201 i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 201 VPMSALKGDNVVNKSE 216 (434)
T ss_dssp EECCTTTCTTTSSCCT
T ss_pred EEEeccCCCCcccccc
Confidence 8999999999988544
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=132.21 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=54.9
Q ss_pred cceEEEEEecCCC-------chhhhhHh-------hhhcCCc-------------EEEEEEEccccccccccccccchHH
Q 018283 185 SGEVYRLFDVGGQ-------RNERRKWI-------HLFEGVS-------------AVIFCAAISEYDQTLFEDEQKNRMM 237 (358)
Q Consensus 185 ~~~~l~i~D~~Gq-------~~~r~~w~-------~y~~~~~-------------~iIfv~dls~~d~~~~~~~~~~~l~ 237 (358)
..+.+.+|||+|+ ++++.++. .|+++++ +++|+++-+ ......+.
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~--------~~~l~~~d 164 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF--------GHGLKPLD 164 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS--------SSSCCHHH
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC--------CCCcchhH
Confidence 3468999999999 88888887 8887544 455555421 01112221
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCC
Q 018283 238 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 317 (358)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~ 317 (358)
..+++.+ . .++|+++|+||+|+...+. +. .+........
T Consensus 165 --~~~~~~l-~----~~~piIlV~NK~Dl~~~~e-----------------------v~----~~k~~i~~~~------- 203 (361)
T 2qag_A 165 --VAFMKAI-H----NKVNIVPVIAKADTLTLKE-----------------------RE----RLKKRILDEI------- 203 (361)
T ss_dssp --HHHHHHT-C----S-SCEEEEEECCSSSCHHH-----------------------HH----HHHHHHHHHT-------
T ss_pred --HHHHHHh-c----cCCCEEEEEECCCCCCHHH-----------------------HH----HHHHHHHHHH-------
Confidence 1333333 2 4689999999999864321 11 1111111211
Q ss_pred CCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 318 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 318 ~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
....+.++.+||+++.+ .+.|..+.+.|.+
T Consensus 204 -~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 204 -EEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -TCC-CCSCCCC----------CHHHHHHHHH
T ss_pred -HHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 12346678899999999 8899988888865
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=1.7e-13 Score=135.65 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=70.5
Q ss_pred cccceEEEEEecCC--------CchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 183 KKSGEVYRLFDVGG--------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 183 ~~~~~~l~i~D~~G--------q~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
...+..+.+|||+| ++.++..+..++++++++|||+|.++ .+.....++...+.. .+
T Consensus 67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~---~~ 131 (456)
T 4dcu_A 67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR---TK 131 (456)
T ss_dssp TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH---cC
Confidence 45567899999999 89999999999999999999999631 111222334444443 47
Q ss_pred CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334 (358)
Q Consensus 255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ 334 (358)
+|++|++||+|+.+..... .++ ..+ + -. ..+.+||+++.
T Consensus 132 ~pvilV~NK~D~~~~~~~~---------~e~---------------------~~l-----g---~~---~~~~iSA~~g~ 170 (456)
T 4dcu_A 132 KPVVLAVNKLDNTEMRANI---------YDF---------------------YSL-----G---FG---EPYPISGTHGL 170 (456)
T ss_dssp SCEEEEEECC------------------CCS---------------------GGG-----S---SS---SEEECCTTTCT
T ss_pred CCEEEEEECccchhhhhhH---------HHH---------------------HHc-----C---CC---ceEEeeccccc
Confidence 8999999999986432100 000 000 0 00 13578999999
Q ss_pred hHHHHHHHHHHHH
Q 018283 335 LVKKTFKLVDETL 347 (358)
Q Consensus 335 ni~~vf~~i~~~i 347 (358)
|+.++|+.+.+.+
T Consensus 171 gv~~L~~~i~~~l 183 (456)
T 4dcu_A 171 GLGDLLDAVAEHF 183 (456)
T ss_dssp THHHHHHHHHTTG
T ss_pred chHHHHHHHHhhc
Confidence 9999999887655
No 160
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.45 E-value=3.2e-13 Score=128.63 Aligned_cols=117 Identities=11% Similarity=0.157 Sum_probs=76.9
Q ss_pred eEEEEEecCCCc----hhhhhHhhhhc---CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEE
Q 018283 187 EVYRLFDVGGQR----NERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFM 258 (358)
Q Consensus 187 ~~l~i~D~~Gq~----~~r~~w~~y~~---~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~ii 258 (358)
..+.+|||+|+. ..+.++..|++ .++++|+|+|+++++ ..+.+.+...++..+... +.+.++|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l~~~p~i 278 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQI 278 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence 689999999963 34455566655 599999999986321 134555555555555432 334678999
Q ss_pred EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
||+||+|+..++ +..+-+.+.+ ...+.++.+||++++||++
T Consensus 279 lV~NK~Dl~~~~--------------------------e~~~~l~~~l-------------~~~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 279 IVANKMDMPEAA--------------------------ENLEAFKEKL-------------TDDYPVFPISAVTREGLRE 319 (342)
T ss_dssp BEEECTTSTTHH--------------------------HHHHHHHHHC-------------CSCCCBCCCSSCCSSTTHH
T ss_pred EEEECccCCCCH--------------------------HHHHHHHHHh-------------hcCCCEEEEECCCCcCHHH
Confidence 999999986431 0011111111 0013467799999999999
Q ss_pred HHHHHHHHHHH
Q 018283 339 TFKLVDETLRR 349 (358)
Q Consensus 339 vf~~i~~~i~~ 349 (358)
+|++|.+.+..
T Consensus 320 L~~~l~~~l~~ 330 (342)
T 1lnz_A 320 LLFEVANQLEN 330 (342)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.45 E-value=5.5e-14 Score=141.12 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=78.5
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
.+..+.+|||+||+.|...+..+++.+|++|+|+|.++ ..+..+.+.+..+.. .++|+++++||+
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKi 114 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKC 114 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence 34578999999999999999999999999999999742 223344455544433 267999999999
Q ss_pred CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283 265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 344 (358)
Q Consensus 265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~ 344 (358)
|+....... . . .+...+ .. ........+.++.+||++++||.++|+.+.
T Consensus 115 Dl~~~~~~~--v----------------~--~~l~~~------~~-----~~e~~~~~~~iv~vSAktG~GI~eLle~I~ 163 (537)
T 3izy_P 115 DKAEADPEK--V----------------K--KELLAY------DV-----VCEDYGGDVQAVHVSALTGENMMALAEATI 163 (537)
T ss_dssp GGTTTSCCS--S----------------S--SHHHHT------TS-----CCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred cccccchHH--H----------------H--HHHHhh------hh-----hHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence 996532110 0 0 000000 00 000011236778899999999999999988
Q ss_pred HHH
Q 018283 345 ETL 347 (358)
Q Consensus 345 ~~i 347 (358)
..+
T Consensus 164 ~l~ 166 (537)
T 3izy_P 164 ALA 166 (537)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 162
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.45 E-value=6.5e-13 Score=127.94 Aligned_cols=128 Identities=10% Similarity=0.029 Sum_probs=83.5
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.++....+ ...+..+.+|||+|++.|.+....+++.+|++|+|+| +. .. +....+++..
T Consensus 45 giTi~~~~~~~------~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~--------g~---~~qt~e~~~~ 106 (370)
T 2elf_A 45 GTSSDITMYNN------DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ--------GL---DAHTGECIIA 106 (370)
T ss_dssp EEESSSEEEEE------CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT--------CC---CHHHHHHHHH
T ss_pred CEEEEeeEEEE------ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC--------CC---cHHHHHHHHH
Confidence 45666666666 6667789999999999999888999999999999998 52 11 1222333333
Q ss_pred HHcCCCCCCCcE-EEEee-CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283 246 VLKQPCFEKTSF-MLFLN-KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 323 (358)
Q Consensus 246 i~~~~~~~~~~i-ilv~N-K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~ 323 (358)
+.. .++|. ++++| |+|+ .+.. .++..+-+ .++.... .-..+
T Consensus 107 ~~~----~~i~~~ivvvNNK~Dl-~~~~-----------------------~~~~~~~i----~~~l~~~-----~~~~~ 149 (370)
T 2elf_A 107 LDL----LGFKHGIIALTRSDST-HMHA-----------------------IDELKAKL----KVITSGT-----VLQDW 149 (370)
T ss_dssp HHH----TTCCEEEEEECCGGGS-CHHH-----------------------HHHHHHHH----HHHTTTS-----TTTTC
T ss_pred HHH----cCCCeEEEEEEeccCC-CHHH-----------------------HHHHHHHH----HHHHHhc-----CCCce
Confidence 222 14566 88888 9999 4321 11111111 1111100 01236
Q ss_pred EEEE--eeccC---hhhHHHHHHHHHHHHH
Q 018283 324 KIYR--TTALD---PKLVKKTFKLVDETLR 348 (358)
Q Consensus 324 ~~~~--tSA~d---~~ni~~vf~~i~~~i~ 348 (358)
.++. +||++ ++||+++|+.+.+.+-
T Consensus 150 ~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 150 ECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp EEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 7888 99999 9999999999988764
No 163
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.44 E-value=6.6e-13 Score=130.78 Aligned_cols=118 Identities=12% Similarity=0.192 Sum_probs=71.5
Q ss_pred cceEEEEEecCCCchhhhhH------------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283 185 SGEVYRLFDVGGQRNERRKW------------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 252 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w------------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 252 (358)
.+..+.+|||+|+++..... ..+++.++++++|+|.++ .....+ ..+...+..
T Consensus 226 ~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~~l~~---- 290 (439)
T 1mky_A 226 DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAGLMER---- 290 (439)
T ss_dssp TTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHHHHH----
T ss_pred CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHHHHHH----
Confidence 44578999999996554332 346788999999999752 111111 222222222
Q ss_pred CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283 253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 332 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d 332 (358)
.++|+++++||.|+.+.+- ...++..+.+...+..+ ....++++||++
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~~~~~SA~~ 338 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHRE---------------------KRYDEFTKLFREKLYFI-----------DYSPLIFTSADK 338 (439)
T ss_dssp TTCEEEEEEECGGGSTTGG---------------------GCHHHHHHHHHHHCGGG-----------TTSCEEECBTTT
T ss_pred cCCCEEEEEECccCCCchh---------------------hHHHHHHHHHHHHhccC-----------CCCcEEEEECCC
Confidence 2689999999999864321 11233333444433221 123478899999
Q ss_pred hhhHHHHHHHHHHHHHH
Q 018283 333 PKLVKKTFKLVDETLRR 349 (358)
Q Consensus 333 ~~ni~~vf~~i~~~i~~ 349 (358)
|.||.++|+.+.+.+.+
T Consensus 339 g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 339 GWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999886644
No 164
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.43 E-value=1.9e-12 Score=118.25 Aligned_cols=128 Identities=9% Similarity=0.132 Sum_probs=71.8
Q ss_pred cccceEEEEEecCCCchh-----------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 183 KKSGEVYRLFDVGGQRNE-----------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~-----------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+..+.+|||+|+..+ .+.+..++++++++|+|+|.+.+. ........++..+... .
T Consensus 67 ~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~~~~~-~ 136 (260)
T 2xtp_A 67 SWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRVKEIFGE-D 136 (260)
T ss_dssp EETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHHHHHHCG-G
T ss_pred EeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHHHHHhCc-h
Confidence 345678999999998654 223344789999999999985321 1122334555555432 1
Q ss_pred CCCCcEEEEee-CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce--EEEEEe
Q 018283 252 FEKTSFMLFLN-KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV--FKIYRT 328 (358)
Q Consensus 252 ~~~~~iilv~N-K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~--~~~~~t 328 (358)
. ..|+++|+| |+|+..+.+.. +..+. + ..++.++ ... + ..+. +..+.+
T Consensus 137 ~-~~~~i~vv~nK~Dl~~~~~~~-------~i~~~-----~---~~~~~~~-~~~---~---------~~~~~~~~~~~~ 187 (260)
T 2xtp_A 137 A-MGHTIVLFTHKEDLNGGSLMD-------YMHDS-----D---NKALSKL-VAA---C---------GGRICAFNNRAE 187 (260)
T ss_dssp G-GGGEEEEEECGGGGTTCCHHH-------HHHHC-----C---CHHHHHH-HHH---T---------TTCEEECCTTCC
T ss_pred h-hccEEEEEEcccccCCccHHH-------HHHhc-----c---hHHHHHH-HHH---h---------CCeEEEecCccc
Confidence 1 245555555 99986432100 00000 0 0111111 111 1 0111 111568
Q ss_pred eccChhhHHHHHHHHHHHHHH
Q 018283 329 TALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 329 SA~d~~ni~~vf~~i~~~i~~ 349 (358)
||+++.|+.++|+.|.+.+..
T Consensus 188 SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 188 GSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.41 E-value=2.8e-12 Score=126.98 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=56.6
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchH---HHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM---METKELF 243 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l---~~~~~~~ 243 (358)
.|..+....| ......+.+|||+||+.|.+.+..++..+|++|+|+|.++- ....++ ..+.+.+
T Consensus 71 iTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g-------~~~~sf~~~~qt~~~~ 137 (458)
T 1f60_A 71 ITIDIALWKF------ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-------EFEAGISKDGQTREHA 137 (458)
T ss_dssp CCCSCSCEEE------ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-------HHHHHTCTTSHHHHHH
T ss_pred cEEEEEEEEE------ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC-------ccccccCcchhHHHHH
Confidence 3444444555 56678899999999999999999999999999999997420 000000 0222222
Q ss_pred HHHHcCCCCCCCc-EEEEeeCCCch
Q 018283 244 DWVLKQPCFEKTS-FMLFLNKFDIF 267 (358)
Q Consensus 244 ~~i~~~~~~~~~~-iilv~NK~Dl~ 267 (358)
..+.. .++| +++++||+|+.
T Consensus 138 ~~~~~----~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 138 LLAFT----LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp HHHHH----TTCCEEEEEEECGGGG
T ss_pred HHHHH----cCCCeEEEEEEccccc
Confidence 22221 1454 99999999996
No 166
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.41 E-value=8e-13 Score=134.47 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=78.0
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+++|||+|+..|...|..+++.+|++|+|+|.++- ... .+...|..... .+.|+++|+||
T Consensus 68 g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g----------v~~-qt~~~~~~~~~----~~ipiIvViNK 132 (599)
T 3cb4_D 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG----------VEA-QTLANCYTAME----MDLEVVPVLNK 132 (599)
T ss_dssp SCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC----------CCT-HHHHHHHHHHH----TTCEEEEEEEC
T ss_pred CCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----CCCCEEEeeec
Confidence 3468999999999999999999999999999999998521 111 22233333332 26799999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+..+. .++..+.+.+.+. + . ...++.+||+++.||+++|+.+
T Consensus 133 iDl~~a~------------------------~~~v~~ei~~~lg-~-----~------~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 133 IDLPAAD------------------------PERVAEEIEDIVG-I-----D------ATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp TTSTTCC------------------------HHHHHHHHHHHTC-C-----C------CTTCEEECTTTCTTHHHHHHHH
T ss_pred cCccccc------------------------HHHHHHHHHHHhC-C-----C------cceEEEeecccCCCchhHHHHH
Confidence 9986431 2222333333221 0 0 0125779999999999999999
Q ss_pred HHHH
Q 018283 344 DETL 347 (358)
Q Consensus 344 ~~~i 347 (358)
.+.+
T Consensus 177 ~~~l 180 (599)
T 3cb4_D 177 VRDI 180 (599)
T ss_dssp HHHS
T ss_pred hhcC
Confidence 8765
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.41 E-value=2.2e-13 Score=135.63 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=74.5
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+..+.+|||+||+.|...|..++..+|++|+|+|.++ ..... +.+.+..+.. .++|+++++||
T Consensus 48 ~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~--------g~~~q---T~e~l~~~~~----~~vPiIVviNK 112 (501)
T 1zo1_I 48 TENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD--------GVMPQ---TIEAIQHAKA----AQVPVVVAVNK 112 (501)
T ss_dssp TTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT--------BSCTT---THHHHHHHHH----TTCCEEEEEEC
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc--------CccHH---HHHHHHHHHh----cCceEEEEEEe
Confidence 344578999999999999999999999999999999752 11111 2222222222 26799999999
Q ss_pred CCchhhhhcc--CCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283 264 FDIFEKKVLK--VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341 (358)
Q Consensus 264 ~Dl~~eki~~--~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~ 341 (358)
+|+....... ..+.....+++. ....+.++.+||++++||.++|+
T Consensus 113 iDl~~~~~~~v~~~l~~~~~~~~~---------------------------------~~~~~~~v~vSAktG~gI~eLle 159 (501)
T 1zo1_I 113 IDKPEADPDRVKNELSQYGILPEE---------------------------------WGGESQFVHVSAKAGTGIDELLD 159 (501)
T ss_dssp SSSSTTCCCCTTCCCCCCCCCTTC---------------------------------CSSSCEEEECCTTTCTTCTTHHH
T ss_pred ccccccCHHHHHHHHHHhhhhHHH---------------------------------hCCCccEEEEeeeeccCcchhhh
Confidence 9997532111 011100000000 01236688899999999999999
Q ss_pred HHHH
Q 018283 342 LVDE 345 (358)
Q Consensus 342 ~i~~ 345 (358)
.+..
T Consensus 160 ~I~~ 163 (501)
T 1zo1_I 160 AILL 163 (501)
T ss_dssp HTTT
T ss_pred hhhh
Confidence 8764
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.40 E-value=2.8e-12 Score=130.46 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=81.6
Q ss_pred ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283 186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 265 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D 265 (358)
...+.+|||+||+.|...|..+++.+|++|+|+|.++ .- ...+.+.+..+.. .++|+++++||+|
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~--------Gv---~~qT~e~l~~l~~----~~vPiIVViNKiD 133 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE--------GF---KPQTQEALNILRM----YRTPFVVAANKID 133 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT--------CC---CHHHHHHHHHHHH----TTCCEEEEEECGG
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC--------Cc---cHhHHHHHHHHHH----cCCeEEEEecccc
Confidence 3469999999999999999999999999999999852 10 1122333333322 3689999999999
Q ss_pred chhhhhccCCCcccccccccccCCCCcccHHHHH----HHHHHHHHHHhhhc---CCCCCCCceEEEEEeeccChhhHHH
Q 018283 266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAY----EFVKKKFEELYFQS---TAPDRVDRVFKIYRTTALDPKLVKK 338 (358)
Q Consensus 266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~----~~i~~~f~~~~~~~---~~~~~~~~~~~~~~tSA~d~~ni~~ 338 (358)
+....-.. ...+++.... ..+ ..+.+.+ .-+...+.+..... ..-......+.++.+||++++||.+
T Consensus 134 l~~~~~~~---~~~~~~e~sa--~~~-~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~e 207 (594)
T 1g7s_A 134 RIHGWRVH---EGRPFMETFS--KQD-IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE 207 (594)
T ss_dssp GSTTCCCC---TTCCHHHHHT--TSC-HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH
T ss_pred cccccccc---cCCchHHHHH--HhH-HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchh
Confidence 96421100 0011111110 011 1222221 11222222111000 0000012456788899999999999
Q ss_pred HHHHHHHHHH
Q 018283 339 TFKLVDETLR 348 (358)
Q Consensus 339 vf~~i~~~i~ 348 (358)
+++++...+.
T Consensus 208 Ll~~I~~~~~ 217 (594)
T 1g7s_A 208 LLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 9999988664
No 169
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.40 E-value=1.6e-12 Score=132.05 Aligned_cols=114 Identities=9% Similarity=0.078 Sum_probs=78.1
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
...+.+++|||+|+..|...+..+++.++++|+|+|.++ .... .+...|..... .+.|+++|+||
T Consensus 70 g~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~~-qt~~~~~~a~~----~~ipiIvviNK 134 (600)
T 2ywe_A 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIEA-QTVANFWKAVE----QDLVIIPVINK 134 (600)
T ss_dssp SCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCCH-HHHHHHHHHHH----TTCEEEEEEEC
T ss_pred CCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------CccH-HHHHHHHHHHH----CCCCEEEEEec
Confidence 345889999999999999999999999999999999852 1111 22333333333 26899999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+..+. .++..+-+.+.+ + -....++.+||+++.||.++|+++
T Consensus 135 iDl~~a~------------------------~~~v~~el~~~l--------g----~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 135 IDLPSAD------------------------VDRVKKQIEEVL--------G----LDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp TTSTTCC------------------------HHHHHHHHHHTS--------C----CCGGGCEECBTTTTBSHHHHHHHH
T ss_pred cCccccC------------------------HHHHHHHHHHhh--------C----CCcccEEEEEeecCCCchHHHHHH
Confidence 9986431 122222222221 0 000125779999999999999999
Q ss_pred HHHHH
Q 018283 344 DETLR 348 (358)
Q Consensus 344 ~~~i~ 348 (358)
.+.+.
T Consensus 179 ~~~lp 183 (600)
T 2ywe_A 179 VNRIP 183 (600)
T ss_dssp HHHSC
T ss_pred HHhcc
Confidence 87653
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.4e-13 Score=137.09 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=75.3
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.||||+|++.+.+.+..++++++++|+|+|.++-. .+ ........+...+..+.. ....|++|++|
T Consensus 241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e-~~~~~~~qt~e~l~~~~~---lgi~~iIVVvN 313 (611)
T 3izq_1 241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FE-SGFDLDGQTKEHMLLASS---LGIHNLIIAMN 313 (611)
T ss_dssp ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HH-TTCCTTSHHHHHHHHHHT---TTCCEEEEEEE
T ss_pred ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---cc-ccchhhhHHHHHHHHHHH---cCCCeEEEEEe
Confidence 567789999999999999999999999999999999985200 00 000001112222222211 22346999999
Q ss_pred CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
|+|+..... ...++..+.+...+..+. . ....+.++.+||++|.||.++
T Consensus 314 KiDl~~~~~---------------------~~~~ei~~~l~~~l~~~g----~---~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQ---------------------QRFEEIKSKLLPYLVDIG----F---FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCH---------------------HHHHHHHHHHHHHHHHHT----C---CGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhH---------------------HHHHHHHHHHHHHHHhhc----c---cccCccEEeeecccCCCcccc
Confidence 999864210 123333444444443331 0 112467888999999999865
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.39 E-value=1.2e-12 Score=129.98 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=43.2
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.++....| ...+..+.+|||+||+.|.+.+..+++.+|++|+|+|.++-.. + .+.+....+.+.+..
T Consensus 106 giTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~---e-~sf~~~~qt~e~l~~ 175 (467)
T 1r5b_A 106 GKTVEVGRAYF------ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF---E-AGFERGGQTREHAVL 175 (467)
T ss_dssp -------CCEE------ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHH---H-HTTSTTCCHHHHHHH
T ss_pred CceEEeeeEEE------ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCcc---c-cccCCCCcHHHHHHH
Confidence 44555544455 5557889999999999999999999999999999999852100 0 000000112222222
Q ss_pred HHcCCCCCCCc-EEEEeeCCCchh
Q 018283 246 VLKQPCFEKTS-FMLFLNKFDIFE 268 (358)
Q Consensus 246 i~~~~~~~~~~-iilv~NK~Dl~~ 268 (358)
... .++| +++++||+|+..
T Consensus 176 ~~~----~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 176 ART----QGINHLVVVINKMDEPS 195 (467)
T ss_dssp HHH----TTCSSEEEEEECTTSTT
T ss_pred HHH----cCCCEEEEEEECccCCC
Confidence 211 2466 999999999853
No 172
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=127.32 Aligned_cols=112 Identities=10% Similarity=0.053 Sum_probs=75.6
Q ss_pred ecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH---HHHcCCC-CCCCcEEEEeeC-CCch
Q 018283 193 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD---WVLKQPC-FEKTSFMLFLNK-FDIF 267 (358)
Q Consensus 193 D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~---~i~~~~~-~~~~~iilv~NK-~Dl~ 267 (358)
|+|||++.|+.|.+||++++++|||||.+ +.+|++ +.+.+. .+++... +.++|++|++|| +|+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSs----------DreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAE----------AHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCB----------TTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCC----------cHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 47999999999999999999999999974 445543 444443 4554432 468999999997 6885
Q ss_pred hhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 268 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 268 ~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
.+. ...+..+. . .+.. -+|.+++.-|||++|+|+.+.++|+.+.+
T Consensus 262 ~Am-----------------------s~~EI~e~----L-~L~~-------l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 262 KRM-----------------------PCFYLAHE----L-HLNL-------LNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp CBC-----------------------CHHHHHHH----T-TGGG-------GCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCC-----------------------CHHHHHHH----c-CCcc-------CCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 431 11222211 1 1110 13679999999999999999999999887
Q ss_pred HHh
Q 018283 348 RRR 350 (358)
Q Consensus 348 ~~~ 350 (358)
.++
T Consensus 307 ~~k 309 (312)
T 3l2o_B 307 ESK 309 (312)
T ss_dssp CC-
T ss_pred Hhh
Confidence 543
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.34 E-value=1.3e-11 Score=131.87 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=52.8
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 261 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~ 261 (358)
+.....+.+|||+||+.|.+.+..+++.+|++|+|+|.++- ......+.+..+.. .++| +++++
T Consensus 355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~-------lgIP~IIVVI 419 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQ-------VGVPYIIVFL 419 (1289)
T ss_dssp ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHH-------HTCSCEEEEE
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHH-------cCCCeEEEEE
Confidence 56678999999999999999999999999999999998531 11222233322222 1567 89999
Q ss_pred eCCCchh
Q 018283 262 NKFDIFE 268 (358)
Q Consensus 262 NK~Dl~~ 268 (358)
||+|+..
T Consensus 420 NKiDLv~ 426 (1289)
T 3avx_A 420 NKCDMVD 426 (1289)
T ss_dssp ECCTTCC
T ss_pred eeccccc
Confidence 9999863
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.34 E-value=1.7e-11 Score=126.65 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=54.0
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
....+.+++|||+|+..|+..+..+++.++++|+|+|.++ ... .....++..+.. .++|+++++|
T Consensus 70 ~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~---------g~~--~qt~~~~~~~~~----~~ip~ilv~N 134 (665)
T 2dy1_A 70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA---------GVQ--VGTERAWTVAER----LGLPRMVVVT 134 (665)
T ss_dssp EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT---------CSC--HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCc---------ccc--hhHHHHHHHHHH----ccCCEEEEec
Confidence 4567899999999999999999999999999999999742 111 122344444433 2689999999
Q ss_pred CCCch
Q 018283 263 KFDIF 267 (358)
Q Consensus 263 K~Dl~ 267 (358)
|+|+.
T Consensus 135 KiD~~ 139 (665)
T 2dy1_A 135 KLDKG 139 (665)
T ss_dssp CGGGC
T ss_pred CCchh
Confidence 99985
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.33 E-value=9.9e-12 Score=113.90 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=50.4
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhc---------CCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFE---------GVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF 252 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~---------~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~ 252 (358)
...+..+.+|||+|+..++.....+++ +++++|||+|++. ...... ..++..+.......
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~--------~~~~~~~~~~~~~l~~~~~~~-- 149 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDV--------YAVDELDKQVVIAITQTFGKE-- 149 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC--------SCCCHHHHHHHHHHHHHHCGG--
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCC--------CCCCHHHHHHHHHHHHHhchh--
Confidence 456679999999999887666555554 8899999998742 112222 23445555443321
Q ss_pred CCCcEEEEeeCCCch
Q 018283 253 EKTSFMLFLNKFDIF 267 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~ 267 (358)
...|+++++||+|+.
T Consensus 150 ~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 150 IWCKTLLVLTHAQFS 164 (262)
T ss_dssp GGGGEEEEEECTTCC
T ss_pred hhcCEEEEEeCcccC
Confidence 124899999999985
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=4.3e-12 Score=127.60 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=57.9
Q ss_pred ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246 (358)
Q Consensus 167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i 246 (358)
.|.......+ ..++..+.+|||+|++.|+..+..+++.+|++|+|+|.++- .. ......+..+
T Consensus 68 iTi~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g---------~~--~~t~~~~~~~ 130 (529)
T 2h5e_A 68 ISITTSVMQF------PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG---------VE--DRTRKLMEVT 130 (529)
T ss_dssp --CCTTEEEE------EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC---------SC--HHHHHHHHHH
T ss_pred cceeeeEEEE------EECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc---------ch--HHHHHHHHHH
Confidence 3444444555 66788999999999999999999999999999999997521 11 1223333333
Q ss_pred HcCCCCCCCcEEEEeeCCCchh
Q 018283 247 LKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 247 ~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
.. .++|+++|+||+|+..
T Consensus 131 -~~---~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 131 -RL---RDTPILTFMNKLDRDI 148 (529)
T ss_dssp -TT---TTCCEEEEEECTTSCC
T ss_pred -HH---cCCCEEEEEcCcCCcc
Confidence 21 3689999999999854
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.30 E-value=1.5e-12 Score=132.74 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=38.9
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccc--cccchHHHHHHHHHHHHcCCCCCCCc-EEE
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED--EQKNRMMETKELFDWVLKQPCFEKTS-FML 259 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~--~~~~~l~~~~~~~~~i~~~~~~~~~~-iil 259 (358)
...+..+.||||+|++.|.+.+..++..++++|+|+|.++-. .+. .......+.+.+... .++| +++
T Consensus 251 ~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~~-------lgip~iIv 320 (592)
T 3mca_A 251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLRA-------LGISEIVV 320 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHHH-------SSCCCEEE
T ss_pred EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHHH-------cCCCeEEE
Confidence 455678999999999999999999999999999999985200 000 001222222222221 1344 999
Q ss_pred EeeCCCchh
Q 018283 260 FLNKFDIFE 268 (358)
Q Consensus 260 v~NK~Dl~~ 268 (358)
++||+|+..
T Consensus 321 viNKiDl~~ 329 (592)
T 3mca_A 321 SVNKLDLMS 329 (592)
T ss_dssp EEECGGGGT
T ss_pred EEecccccc
Confidence 999999864
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=2.1e-11 Score=107.02 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred EEEEEecCCCch----------hhhhHhhhh---cCCcEEEEEEEccccccccccccccchHH-HHHHHHHHHHcCCCCC
Q 018283 188 VYRLFDVGGQRN----------ERRKWIHLF---EGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPCFE 253 (358)
Q Consensus 188 ~l~i~D~~Gq~~----------~r~~w~~y~---~~~~~iIfv~dls~~d~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~ 253 (358)
.+.+||++|+.. +++....|+ ..++++++|+|++... .... +...++. . .
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------~~~~~~~~~~~~---~----~ 136 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL---------KDLDQQMIEWAV---D----S 136 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---------CHHHHHHHHHHH---H----T
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC---------chhHHHHHHHHH---H----c
Confidence 578999999842 333444566 4788999999985311 1111 1122221 1 2
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++++||+|+....... ..+..+..++ .+ ....+..+.|||+|+
T Consensus 137 ~~~~~~v~nK~D~~s~~~~~-------------------~~~~~~~~~~----~~----------~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 137 NIAVLVLLTKADKLASGARK-------------------AQLNMVREAV----LA----------FNGDVQVETFSSLKK 183 (210)
T ss_dssp TCCEEEEEECGGGSCHHHHH-------------------HHHHHHHHHH----GG----------GCSCEEEEECBTTTT
T ss_pred CCCeEEEEecccCCCchhHH-------------------HHHHHHHHHH----Hh----------cCCCCceEEEeecCC
Confidence 57899999999985421000 0122222222 11 012356678999999
Q ss_pred hhHHHHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDETLR 348 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~ 348 (358)
.+++++|+.+.+.+.
T Consensus 184 ~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 184 QGVDKLRQKLDTWFS 198 (210)
T ss_dssp BSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999887653
No 179
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.26 E-value=4.2e-11 Score=112.09 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=47.4
Q ss_pred ccceEEEEEecCCCc---------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283 184 KSGEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~---------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 254 (358)
.....+.+|||+|+. .+...+..+++.+++++||+|.+++ ..... ..++.+ .. .+
T Consensus 53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~~--~i~~~l-~~---~~ 116 (301)
T 1ega_A 53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDDE--MVLNKL-RE---GK 116 (301)
T ss_dssp ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHHH--HHHHHH-HS---SS
T ss_pred ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHHH--HHHHHH-Hh---cC
Confidence 356789999999998 3444556788999999999997531 11111 222233 21 36
Q ss_pred CcEEEEeeCCCchh
Q 018283 255 TSFMLFLNKFDIFE 268 (358)
Q Consensus 255 ~~iilv~NK~Dl~~ 268 (358)
.|+++++||+|+..
T Consensus 117 ~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 117 APVILAVNKVDNVQ 130 (301)
T ss_dssp SCEEEEEESTTTCC
T ss_pred CCEEEEEECcccCc
Confidence 89999999999854
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.26 E-value=4.5e-11 Score=123.93 Aligned_cols=83 Identities=13% Similarity=0.012 Sum_probs=58.6
Q ss_pred eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 245 (358)
Q Consensus 166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~ 245 (358)
..|.+.....+ ...+..+.+|||+|+..|+..|..+++.+|++|+|+|.++.. . ......|..
T Consensus 62 giTi~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~----------~-~~t~~~~~~ 124 (691)
T 1dar_A 62 GITITAAVTTC------FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV----------E-PQSETVWRQ 124 (691)
T ss_dssp -----CCEEEE------EETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS----------C-HHHHHHHHH
T ss_pred ccccccceEEE------EECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc----------c-hhhHHHHHH
Confidence 34444444555 556789999999999999999999999999999999985321 1 122334444
Q ss_pred HHcCCCCCCCcEEEEeeCCCchhh
Q 018283 246 VLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 246 i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
+.. .+.|+++|+||+|+...
T Consensus 125 ~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 125 AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHH----TTCCEEEEEECTTSTTC
T ss_pred HHH----cCCCEEEEEECCCcccC
Confidence 433 26899999999999754
No 181
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.25 E-value=7.2e-12 Score=116.39 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=47.8
Q ss_pred ceEEEEEecCCCc-------------hhhhhHhhhhcCCcEEE-EEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 186 GEVYRLFDVGGQR-------------NERRKWIHLFEGVSAVI-FCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 186 ~~~l~i~D~~Gq~-------------~~r~~w~~y~~~~~~iI-fv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+.+|||+|+. .++..+..|+++++++| +|+|.++ +. ...+...+++.+ ..
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~---------~~-~~~~~~~~~~~~-~~-- 190 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---------DL-ANSDALKIAKEV-DP-- 190 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS---------CG-GGCHHHHHHHHH-CT--
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc---------ch-hhhHHHHHHHHh-CC--
Confidence 4689999999964 56788899999998776 7888742 11 111222344443 21
Q ss_pred CCCCcEEEEeeCCCchh
Q 018283 252 FEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~ 268 (358)
.+.|+++|+||+|+..
T Consensus 191 -~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 191 -QGQRTIGVITKLDLMD 206 (299)
T ss_dssp -TCSSEEEEEECGGGSC
T ss_pred -CCCeEEEEEEccccCC
Confidence 3689999999999864
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.25 E-value=2e-11 Score=114.36 Aligned_cols=105 Identities=11% Similarity=0.152 Sum_probs=73.4
Q ss_pred EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccc-hHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283 188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN-RMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266 (358)
Q Consensus 188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 266 (358)
.+.+||+ |++++.+|..||+++|++|+|+|+++ .. ++.....|+..+.. .++|++||+||+||
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLAEK----NELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHc
Confidence 7899999 99999999999999999999999853 12 22233334433322 36899999999999
Q ss_pred hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
..++. ++++.++.. .|. .. +.+++|||++++||+++|..+..
T Consensus 128 ~~~~~-----------------------v~~~~~~~~-~~~------------~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 128 YDEDD-----------------------LRKVRELEE-IYS------------GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHH-----------------------HHHHHHHHH-HHT------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCchh-----------------------HHHHHHHHH-HHh------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 64321 122233221 111 12 55788999999999999987753
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.25 E-value=6.2e-11 Score=108.98 Aligned_cols=76 Identities=7% Similarity=0.091 Sum_probs=47.0
Q ss_pred cccceEEEEEecCCCchhhhh-------Hhhh--hcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNERRK-------WIHL--FEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF 252 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~-------w~~y--~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~ 252 (358)
...+..+.+|||+|+..+... +..| +++++++|||+|++.. ..... .+++..+...+...
T Consensus 83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~--------~~~~~~~~~~~~l~~~~~~~-- 152 (270)
T 1h65_A 83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY--------RVDNLDKLVAKAITDSFGKG-- 152 (270)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC--------CCCHHHHHHHHHHHHHHCGG--
T ss_pred eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC--------cCCHHHHHHHHHHHHHhCcc--
Confidence 556788999999999765422 2223 3479999999997421 11111 23334443332211
Q ss_pred CCCcEEEEeeCCCchh
Q 018283 253 EKTSFMLFLNKFDIFE 268 (358)
Q Consensus 253 ~~~~iilv~NK~Dl~~ 268 (358)
...|+++|+||+|+..
T Consensus 153 ~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 153 IWNKAIVALTHAQFSP 168 (270)
T ss_dssp GGGGEEEEEECCSCCC
T ss_pred cccCEEEEEECcccCC
Confidence 1269999999999853
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.24 E-value=9.8e-11 Score=121.60 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=53.6
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~ 264 (358)
....++||||+|+..|...+..+++.+|++|+|+|.++- ....+...|..+.. .+.|+++|+||+
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~~~~~~----~~ip~ilviNKi 144 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVWRQANK----YKVPRIAFVNKM 144 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHHHHHHH----cCCCEEEEEeCC
Confidence 448999999999999999999999999999999998531 11223334444332 268999999999
Q ss_pred Cchhh
Q 018283 265 DIFEK 269 (358)
Q Consensus 265 Dl~~e 269 (358)
|+...
T Consensus 145 D~~~~ 149 (704)
T 2rdo_7 145 DRMGA 149 (704)
T ss_pred Ccccc
Confidence 98654
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.19 E-value=2.5e-10 Score=118.34 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=55.2
Q ss_pred cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N 262 (358)
...+..+.+|||+|+..+...+..+++.+|++|+|+|.++- .. ......|..+.. .+.|+++|+|
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g----------~~-~~~~~~~~~~~~----~~~p~ilviN 135 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG----------VE-PQTETVWRQATT----YGVPRIVFVN 135 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB----------SC-HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred EECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC----------Cc-HHHHHHHHHHHH----cCCCEEEEEE
Confidence 45678999999999999999999999999999999997521 11 122344444433 2689999999
Q ss_pred CCCchhh
Q 018283 263 KFDIFEK 269 (358)
Q Consensus 263 K~Dl~~e 269 (358)
|+|+...
T Consensus 136 K~Dl~~~ 142 (693)
T 2xex_A 136 KMDKLGA 142 (693)
T ss_dssp CTTSTTC
T ss_pred CCCcccc
Confidence 9999753
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.17 E-value=3.2e-11 Score=112.88 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=56.7
Q ss_pred ccceEEEEEecCCC-------chhhhhHh-------hhhcCCc-------------EEEEEEEccccccccccccccchH
Q 018283 184 KSGEVYRLFDVGGQ-------RNERRKWI-------HLFEGVS-------------AVIFCAAISEYDQTLFEDEQKNRM 236 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq-------~~~r~~w~-------~y~~~~~-------------~iIfv~dls~~d~~~~~~~~~~~l 236 (358)
.....+++||++|+ +.++.++. .|+++.+ +++|+.+-+. ...+..
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~--------~~Ld~~ 144 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--------HGLKPL 144 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS--------SSCCHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc--------cCCCHH
Confidence 34578999999999 67777776 7776543 3454443210 011222
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCC
Q 018283 237 METKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAP 316 (358)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~ 316 (358)
. .++++.+ . .++|+++|+||.|+...+... ...+++.+++..
T Consensus 145 ~--~~~l~~l-~----~~~~iilV~~K~Dl~~~~e~~-------------------~~~~~~~~~~~~------------ 186 (301)
T 2qnr_A 145 D--VAFMKAI-H----NKVNIVPVIAKADTLTLKERE-------------------RLKKRILDEIEE------------ 186 (301)
T ss_dssp H--HHHHHHH-T----TTSCEEEEECCGGGSCHHHHH-------------------HHHHHHHHHHHH------------
T ss_pred H--HHHHHHH-H----hcCCEEEEEEeCCCCCHHHHH-------------------HHHHHHHHHHHH------------
Confidence 1 2344443 1 257999999999986432100 001222332211
Q ss_pred CCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 317 DRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 317 ~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
..+.++++||+++ |++++|..+.+.+.+
T Consensus 187 ----~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 187 ----HNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp ----TTCCCCCCC----------CHHHHHHHHT
T ss_pred ----cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 1255788999999 999999999988864
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.16 E-value=6.6e-10 Score=115.27 Aligned_cols=134 Identities=11% Similarity=0.191 Sum_probs=78.4
Q ss_pred eEEEEEecCCCch---hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 187 EVYRLFDVGGQRN---ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 187 ~~l~i~D~~Gq~~---~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+.+|||+|... ....+..|++++|++|||+|.+. .....+ ...+...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence 4689999999765 45778889999999999999742 122222 2333333332 25689999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCC-CCCCceEEEEEeecc-----------
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAP-DRVDRVFKIYRTTAL----------- 331 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~-~~~~~~~~~~~tSA~----------- 331 (358)
+|+....... . ......+++.+.+...+.......... +.......++.+||+
T Consensus 240 ~Dl~~~~~~~--~-------------ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 240 WDQVRESLID--P-------------DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp GGGGGGGCSS--T-------------TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred cccccccccC--h-------------hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 9997543110 0 000122333333333322211110000 000012246789999
Q ss_pred ---ChhhHHHHHHHHHHHHHH
Q 018283 332 ---DPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 332 ---d~~ni~~vf~~i~~~i~~ 349 (358)
++.|+.++++.+.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.09 E-value=6.4e-09 Score=91.87 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=66.6
Q ss_pred cceEEEEEecCCCchhhhhHhhhh-cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLF-EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~-~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
....+.+|||+|+-. .+.++ ...+.+|+|+|.+..+ .... .+.... +.|+++++||
T Consensus 107 ~~~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~---------~~~~----~~~~~~------~~~~iiv~NK 163 (221)
T 2wsm_A 107 SDCDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGD---------DVVE----KHPEIF------RVADLIVINK 163 (221)
T ss_dssp TTCSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCT---------THHH----HCHHHH------HTCSEEEEEC
T ss_pred CCCCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcc---------hhhh----hhhhhh------hcCCEEEEec
Confidence 356789999999621 11222 3678899999985321 1111 111111 3688999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+....- ...++..+++... ...+.++.+||++++|+.++|+++
T Consensus 164 ~Dl~~~~~---------------------~~~~~~~~~~~~~--------------~~~~~i~~~Sa~~g~gi~~l~~~l 208 (221)
T 2wsm_A 164 VALAEAVG---------------------ADVEKMKADAKLI--------------NPRAKIIEMDLKTGKGFEEWIDFL 208 (221)
T ss_dssp GGGHHHHT---------------------CCHHHHHHHHHHH--------------CTTSEEEECBTTTTBTHHHHHHHH
T ss_pred ccCCcchh---------------------hHHHHHHHHHHHh--------------CCCCeEEEeecCCCCCHHHHHHHH
Confidence 99865321 2234444444321 012457889999999999999999
Q ss_pred HHHHHH
Q 018283 344 DETLRR 349 (358)
Q Consensus 344 ~~~i~~ 349 (358)
.+.+..
T Consensus 209 ~~~~~~ 214 (221)
T 2wsm_A 209 RGILNV 214 (221)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 987753
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.08 E-value=1.6e-09 Score=103.56 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=70.5
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+..+.||||+|-.. -.......+|.+|+|+|.+.-++ + . .+ . ....+.|+++|+||
T Consensus 169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~----------~----~---~l-~-~~~~~~p~ivVlNK 226 (355)
T 3p32_A 169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQ----------L----Q---GI-K-KGVLELADIVVVNK 226 (355)
T ss_dssp HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCT----------T----T---TC-C-TTSGGGCSEEEEEC
T ss_pred hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCcc----------H----H---HH-H-HhHhhcCCEEEEEC
Confidence 3567899999999533 23344689999999999642211 0 0 00 0 11234689999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+..+. +.....+.+...+.... +........++.+||++++||+++++.|
T Consensus 227 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~~-----~~~~~~~~~vi~iSA~~g~Gi~~L~~~i 278 (355)
T 3p32_A 227 ADGEHHK-----------------------EARLAARELSAAIRLIY-----PREALWRPPVLTMSAVEGRGLAELWDTV 278 (355)
T ss_dssp CCGGGHH-----------------------HHHHHHHHHHHHHHHHS-----TTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred CCCcChh-----------------------HHHHHHHHHHHHHhhcc-----ccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence 9986431 12223333333332221 0000112346789999999999999999
Q ss_pred HHHHHH
Q 018283 344 DETLRR 349 (358)
Q Consensus 344 ~~~i~~ 349 (358)
.+.+..
T Consensus 279 ~~~~~~ 284 (355)
T 3p32_A 279 ERHRQV 284 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.06 E-value=2.7e-10 Score=109.16 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=51.5
Q ss_pred cceEEEEEecCCCchh-------------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 185 SGEVYRLFDVGGQRNE-------------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~-------------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
....+.+|||+|+..+ +.+...|+++++++|+|+|.+.-+ ....+++.++..+.
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~---- 200 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD---- 200 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----
Confidence 3457999999999876 778889999999999999864211 11123344444432
Q ss_pred CCCCcEEEEeeCCCchhh
Q 018283 252 FEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~e 269 (358)
..+.|+++|+||+|+..+
T Consensus 201 ~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 201 PSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp TTCTTEEEEEECGGGCCT
T ss_pred ccCCCEEEEEeCCccCCC
Confidence 136799999999999753
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.05 E-value=3.9e-10 Score=119.34 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=54.0
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..++.+++|||+|+..|...|..+++.+|++|+|+|.++ ..... ....|..+.. .++|+++|+||
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNK 159 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCVQ-TETVLRQALG----ERIKPVVVINK 159 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCHH-HHHHHHHHHH----TTCEEEEEEEC
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----cCCCeEEEEEC
Confidence 347899999999999999999999999999999999852 11222 2333444433 26899999999
Q ss_pred CCchh
Q 018283 264 FDIFE 268 (358)
Q Consensus 264 ~Dl~~ 268 (358)
+|+..
T Consensus 160 ~D~~~ 164 (842)
T 1n0u_A 160 VDRAL 164 (842)
T ss_dssp HHHHH
T ss_pred CCcch
Confidence 99974
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=7.3e-10 Score=108.06 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.6
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.++|+|+|++|||||||++.+.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999873
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.98 E-value=2.9e-09 Score=94.43 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333 (358)
Q Consensus 254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~ 333 (358)
+.|+++++||+|+..++. ...+++.+++... .....++++||+++
T Consensus 164 ~~~~iiv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~g 208 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG---------------------ADIKKMENDAKRI--------------NPDAEVVLLSLKTM 208 (226)
T ss_dssp TTCSEEEEECGGGHHHHT---------------------CCHHHHHHHHHHH--------------CTTSEEEECCTTTC
T ss_pred hcCCEEEEeccccCchhH---------------------HHHHHHHHHHHHh--------------CCCCeEEEEEecCC
Confidence 368899999999965421 1234444443321 01245788999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 018283 334 KLVKKTFKLVDETLRR 349 (358)
Q Consensus 334 ~ni~~vf~~i~~~i~~ 349 (358)
+|+.++|+.+.+.+..
T Consensus 209 ~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 209 EGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887643
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=5.2e-09 Score=101.99 Aligned_cols=114 Identities=14% Similarity=0.221 Sum_probs=68.6
Q ss_pred eEEEEEecCCCch----hhhhHhhh---hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283 187 EVYRLFDVGGQRN----ERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 187 ~~l~i~D~~Gq~~----~r~~w~~y---~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil 259 (358)
..+.+||++|... .+.+...+ .+.++.+++|+|++ + .....+......+..+ .+.+.+.|.+|
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~------~~~~~ls~g~~el~~l--a~aL~~~P~IL 274 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--D------EPLKTLETLRKEVGAY--DPALLRRPSLV 274 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--S------CHHHHHHHHHHHHHHH--CHHHHHSCEEE
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--c------CCHHHHHHHHHHHHHH--hHHhhcCCEEE
Confidence 6789999999832 22232333 45799999999985 1 1112222222222222 11123568999
Q ss_pred EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283 260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 339 (358)
Q Consensus 260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v 339 (358)
++||+|+.... ....+...+. ...+.++.+||+++++++++
T Consensus 275 VlNKlDl~~~~---------------------------~~~~l~~~l~------------~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 275 ALNKVDLLEEE---------------------------AVKALADALA------------REGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEECCTTSCHH---------------------------HHHHHHHHHH------------TTTSCEEECCTTTCTTHHHH
T ss_pred EEECCChhhHH---------------------------HHHHHHHHHH------------hcCCeEEEEECCCccCHHHH
Confidence 99999985321 1111122211 11245678999999999999
Q ss_pred HHHHHHHHHH
Q 018283 340 FKLVDETLRR 349 (358)
Q Consensus 340 f~~i~~~i~~ 349 (358)
|+.|.+.+..
T Consensus 316 ~~~i~~~l~~ 325 (416)
T 1udx_A 316 KEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.97 E-value=2.8e-09 Score=96.87 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=43.0
Q ss_pred ceEEEEEecCCCchhhhhHh------hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283 186 GEVYRLFDVGGQRNERRKWI------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 259 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~~w~------~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil 259 (358)
.+.+.+|||+|+......+. .++.+ +.+|+|+|.+.. .+...+............. .+.|+++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~~---~~~p~~i 176 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-------KKPNDYCFVRFFALLIDLR---LGATTIP 176 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-------CSHHHHHHHHHHHHHHHHH---HTSCEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-------cCHHHHHHHHHHHHHHhcc---cCCCeEE
Confidence 36799999999987644322 24566 899999986421 1112222222111111111 2579999
Q ss_pred EeeCCCchhh
Q 018283 260 FLNKFDIFEK 269 (358)
Q Consensus 260 v~NK~Dl~~e 269 (358)
|+||+|+...
T Consensus 177 v~NK~D~~~~ 186 (262)
T 1yrb_A 177 ALNKVDLLSE 186 (262)
T ss_dssp EECCGGGCCH
T ss_pred EEeccccccc
Confidence 9999998643
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.94 E-value=6.4e-10 Score=106.30 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=44.8
Q ss_pred ceEEEEEecCCCc-------------hhhhhHhhhhcCCcEEEEEE-EccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 186 GEVYRLFDVGGQR-------------NERRKWIHLFEGVSAVIFCA-AISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 186 ~~~l~i~D~~Gq~-------------~~r~~w~~y~~~~~~iIfv~-dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+.+|||+|.. .++.++..|+++++.+|+++ |.+ .+... .++..+++.+..
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~---------~~~~~-~~~~~i~~~~~~--- 195 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPAN---------SDLAN-SDALKVAKEVDP--- 195 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETT---------SCGGG-CHHHHHHHHHCT---
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCC---------Cccch-hHHHHHHHHhCc---
Confidence 4679999999963 46778888998777666654 432 11111 122334444421
Q ss_pred CCCCcEEEEeeCCCchh
Q 018283 252 FEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~ 268 (358)
.+.|+++|+||+|+..
T Consensus 196 -~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 196 -QGQRTIGVITKLDLMD 211 (353)
T ss_dssp -TCTTEEEEEECGGGSC
T ss_pred -CCCceEEEeccccccC
Confidence 3689999999999964
No 197
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.93 E-value=2.2e-09 Score=100.44 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=64.0
Q ss_pred cceEEEEEecCCCch-------------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 185 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~-------------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
....+.+|||+|... ++..+..|+++++++|+|+|.+.-+. ... +...++..+ ..
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~------~~~---~~~~i~~~~-~~-- 196 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL------ANS---DALQLAKEV-DP-- 196 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS------TTC---SHHHHHHHH-CS--
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch------hhh---HHHHHHHHh-CC--
Confidence 446899999999864 67788899999999999999642110 001 112233333 21
Q ss_pred CCCCcEEEEeeCCCchhhhh-----ccCCCcc--cccccccccCCCC---cccHHHHHHHHHHHHH
Q 018283 252 FEKTSFMLFLNKFDIFEKKV-----LKVPLNV--CEWFKDYQPVSTG---KQEIENAYEFVKKKFE 307 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~eki-----~~~~l~~--~~~f~~y~~~~~g---~~~~~~~~~~i~~~f~ 307 (358)
.+.|+++|+||+|+....- ....+.. ..|++-...+..+ ..++.+..+.+.+.|.
T Consensus 197 -~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp -SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 3689999999999864321 0011111 2333322111111 2567777777777664
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.90 E-value=3.3e-08 Score=99.72 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=61.7
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
|+-|+.-..+.+ ..++..++|.||+|+-.|..-...-++-+|++|+|+|.. ..-...+...|+
T Consensus 84 RGITI~s~~~~~------~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~-----------~GV~~qT~~v~~ 146 (548)
T 3vqt_A 84 RGISVTTSVMQF------PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAA-----------KGVEAQTRKLMD 146 (548)
T ss_dssp ----CTTTEEEE------EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETT-----------TBSCHHHHHHHH
T ss_pred CCCcEeeceEEE------EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecC-----------CCcccccHHHHH
Confidence 444544445666 778899999999999999888888889999999999963 223334556666
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
..... +.|+++|.||+|...+
T Consensus 147 ~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 147 VCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHT----TCCEEEEEECTTSCCC
T ss_pred HHHHh----CCceEEEEecccchhc
Confidence 66543 6899999999998643
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.89 E-value=3e-09 Score=107.38 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=49.1
Q ss_pred eEEEEEecCCCch-----------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 187 EVYRLFDVGGQRN-----------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 187 ~~l~i~D~~Gq~~-----------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
..+.+|||+|... +...+..++.++|++|||+|.+.+ ....+...+++.+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence 3689999999975 667888899999999999997532 111223344444322 257
Q ss_pred cEEEEeeCCCchh
Q 018283 256 SFMLFLNKFDIFE 268 (358)
Q Consensus 256 ~iilv~NK~Dl~~ 268 (358)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999874
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.78 E-value=4.2e-08 Score=93.52 Aligned_cols=112 Identities=9% Similarity=-0.026 Sum_probs=61.6
Q ss_pred cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH-HHHcCCCCCCCcEEEEeeC
Q 018283 185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD-WVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~~~iilv~NK 263 (358)
.+..+.++||+|-. .-+......++.+++|+|.+.. ... +.+. .+ -+.|.++++||
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~----------~~~----~~i~~~i------l~~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGG----------DEL----QGIKRGI------IEMADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------------------CCSCSEEEECC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcc----------hhH----HHhHHHH------HhcCCEEEEee
Confidence 45678999999953 2345567899999999997521 111 1111 11 13578999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.... +.......+....... .+........++.+||++++|+.+++++|
T Consensus 222 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~-----~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I 273 (349)
T 2www_A 222 SDGDLIV-----------------------PARRIQAEYVSALKLL-----RKRSQVWKPKVIRISARSGEGISEMWDKM 273 (349)
T ss_dssp CSGGGHH-----------------------HHHHHHHHHHHHHTTC-----C-----CCCEEEECCTTTCTTHHHHHHHH
T ss_pred ecCCCch-----------------------hHHHHHHHHHHHHHhc-----CccccCCCceEEEEecCCCCCHHHHHHHH
Confidence 9986421 0111111111111000 00000011345679999999999999998
Q ss_pred HHHH
Q 018283 344 DETL 347 (358)
Q Consensus 344 ~~~i 347 (358)
.+.+
T Consensus 274 ~~~~ 277 (349)
T 2www_A 274 KDFQ 277 (349)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 201
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.72 E-value=1e-08 Score=99.39 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCch----hhhhHh---hhhcCCcEEEEEEEccc
Q 018283 186 GEVYRLFDVGGQRN----ERRKWI---HLFEGVSAVIFCAAISE 222 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~----~r~~w~---~y~~~~~~iIfv~dls~ 222 (358)
.+.+.+|||+|+.. .+.++. .++++++++|+|+|.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 47899999999854 333443 45789999999999875
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.69 E-value=5.1e-08 Score=92.65 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=65.4
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
..+..+.+|||+|....... ..+.+|++|+|+|.+..+.. ..+.. .. .+.|.++|+||
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK 203 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINK 203 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECC
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEEC
Confidence 34578899999997654332 46899999999997533210 00000 01 13578999999
Q ss_pred CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283 264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i 343 (358)
+|+.... ++....+.+...+... .+........++.+||++++|++++++.|
T Consensus 204 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~-----~~~~~~~~~~vi~iSA~~g~gi~~L~~~l 255 (341)
T 2p67_A 204 DDGDNHT-----------------------NVAIARHMYESALHIL-----RRKYDEWQPRVLTCSALEKRGIDEIWHAI 255 (341)
T ss_dssp CCTTCHH-----------------------HHHHHHHHHHHHHHHS-----CCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred CCCCChH-----------------------HHHHHHHHHHHHHHhc-----cccccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence 9985431 1122222222222211 00000012346679999999999999998
Q ss_pred HHHHH
Q 018283 344 DETLR 348 (358)
Q Consensus 344 ~~~i~ 348 (358)
.+.+.
T Consensus 256 ~~~~~ 260 (341)
T 2p67_A 256 IDFKT 260 (341)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=4e-07 Score=86.92 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.9
Q ss_pred ceEEEEEecCCCchhh-------hhHhhhhcCCcEEEEEEEccc
Q 018283 186 GEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r-------~~w~~y~~~~~~iIfv~dls~ 222 (358)
...+.+|||+|+..+. ..+..++++++++++|+|.++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3579999999998653 234556899999999999985
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.58 E-value=5.8e-07 Score=86.12 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=30.4
Q ss_pred cceEEEEEecCCCchh-------hhhHhhhhcCCcEEEEEEEccc
Q 018283 185 SGEVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~-------r~~w~~y~~~~~~iIfv~dls~ 222 (358)
....+.+|||+|+... ...+..++++++++++|+|.++
T Consensus 67 ~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 67 VPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp ECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3467999999999764 2345567899999999999975
No 205
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.39 E-value=9e-07 Score=82.57 Aligned_cols=112 Identities=10% Similarity=0.109 Sum_probs=72.1
Q ss_pred ccceEEEEEe-c-----CCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283 184 KSGEVYRLFD-V-----GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 257 (358)
Q Consensus 184 ~~~~~l~i~D-~-----~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i 257 (358)
+..+.+.+|| + ..|++++.+...|+.++|++|+|+|+++-+ .+.+.+..++..++ . .++|+
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~------~s~~~l~~~l~~~~---~----~~~~~ 113 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPE------FNNYLLDNMLVVYE---Y----FKVEP 113 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTT------CCHHHHHHHHHHHH---H----TTCEE
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCC------CCHHHHHHHHHHHH---h----CCCCE
Confidence 4456677776 3 348889999999999999999999985310 12233333333222 2 36899
Q ss_pred EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283 258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337 (358)
Q Consensus 258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~ 337 (358)
+||+||+||..+... ...+++.+ .|... .+.+++|||++++|++
T Consensus 114 ilV~NK~DL~~~~~v--------------------~~~~~~~~----~~~~~------------g~~~~~~SA~~g~gi~ 157 (302)
T 2yv5_A 114 VIVFNKIDLLNEEEK--------------------KELERWIS----IYRDA------------GYDVLKVSAKTGEGID 157 (302)
T ss_dssp EEEECCGGGCCHHHH--------------------HHHHHHHH----HHHHT------------TCEEEECCTTTCTTHH
T ss_pred EEEEEcccCCCcccc--------------------HHHHHHHH----HHHHC------------CCeEEEEECCCCCCHH
Confidence 999999999543100 00122222 22221 2467889999999999
Q ss_pred HHHHHHH
Q 018283 338 KTFKLVD 344 (358)
Q Consensus 338 ~vf~~i~ 344 (358)
++|+.+.
T Consensus 158 ~L~~~l~ 164 (302)
T 2yv5_A 158 ELVDYLE 164 (302)
T ss_dssp HHHHHTT
T ss_pred HHHhhcc
Confidence 9998764
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.39 E-value=1e-07 Score=98.00 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 244 (358)
Q Consensus 165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~ 244 (358)
|.-|.....+.+ ..++..+++.||+|+..|..-...-.+-+|++|+|+|.. .... ..+...|+
T Consensus 51 RGITI~s~~~~~------~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~---------~GV~--~qT~~v~~ 113 (638)
T 3j25_A 51 RGITIQTGITSF------QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK---------DGVQ--AQTRILFH 113 (638)
T ss_dssp HSSCSSCCCCCC------BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESS---------CTTC--SHHHHHHH
T ss_pred CCCcEEeeeEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCC---------CCCc--HHHHHHHH
Confidence 344444444555 677889999999999999888888889999999999974 2222 23345555
Q ss_pred HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283 245 WVLKQPCFEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 245 ~i~~~~~~~~~~iilv~NK~Dl~~e 269 (358)
..... ++|.++|.||+|....
T Consensus 114 ~a~~~----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 114 ALRKM----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHH----TCSCEECCEECCSSSC
T ss_pred HHHHc----CCCeEEEEeccccccC
Confidence 55442 6789999999998643
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=1.1e-06 Score=84.29 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCC
Q 018283 196 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP 275 (358)
Q Consensus 196 Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~ 275 (358)
.++.|++.+.+++++++++|+|+|+++++. .+...+...+ .+.|+++|+||+||....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~------------~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~----- 112 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG------------SWLPGLHRFV-----GNNKVLLVGNKADLIPKS----- 112 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHH------------HCCTTHHHHS-----SSSCEEEEEECGGGSCTT-----
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcc------------cHHHHHHHHh-----CCCcEEEEEEChhcCCcc-----
Confidence 568999999999999999999999975421 1122233332 368999999999996421
Q ss_pred CcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283 276 LNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346 (358)
Q Consensus 276 l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~ 346 (358)
...++..+|+...+.... -+...++.+||+++.|++++++.+.+.
T Consensus 113 -----------------~~~~~~~~~l~~~~~~~g---------~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 113 -----------------VKHDKVKHWMRYSAKQLG---------LKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTT---------CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------------cCHHHHHHHHHHHHHHcC---------CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 223445566655554321 112357889999999999999988654
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.36 E-value=1.5e-06 Score=83.44 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=71.8
Q ss_pred CCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccC
Q 018283 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274 (358)
Q Consensus 195 ~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~ 274 (358)
..|+.|++.+.+++++++.+|+|+|+++++..+ ...+ ...+ .+.|+++|+||+||....
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~l-----~~~piilV~NK~DLl~~~---- 114 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRFA-----ADNPILLVGNKADLLPRS---- 114 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHHC-----TTSCEEEEEECGGGSCTT----
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHHh-----CCCCEEEEEEChhcCCCc----
Confidence 468999999999999999999999998765211 1112 2222 367999999999996431
Q ss_pred CCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347 (358)
Q Consensus 275 ~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i 347 (358)
...+...+|+...+.... -+...++.+||+++.|++++++.+.+..
T Consensus 115 ------------------~~~~~~~~~l~~~~~~~g---------~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 115 ------------------VKYPKLLRWMRRMAEELG---------LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTT---------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ------------------cCHHHHHHHHHHHHHHcC---------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 223455566665554321 1123577899999999999999887643
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.24 E-value=4.3e-06 Score=80.64 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCchhhh-------hHhhhhcCCcEEEEEEEcccc
Q 018283 186 GEVYRLFDVGGQRNERR-------KWIHLFEGVSAVIFCAAISEY 223 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~~r~-------~w~~y~~~~~~iIfv~dls~~ 223 (358)
...+.+|||+|+...+. .|..++++++++++|+|.++-
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 34689999999987654 688899999999999998753
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.18 E-value=5e-06 Score=78.74 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=26.1
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEcc
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 221 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls 221 (358)
..+..+.++||+|...-. ......++.+++|+|.+
T Consensus 145 ~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPG 179 (337)
T ss_dssp HTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSC
T ss_pred cCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCC
Confidence 356789999999975321 23457899999999864
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.12 E-value=9.8e-06 Score=84.22 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=55.0
Q ss_pred ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 263 (358)
Q Consensus 184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK 263 (358)
.+++.+++.||+|+-.|..--..-++-+|++|+|+|.. . .-...+...|+..... +.|+++|.||
T Consensus 82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDav---------e--GV~~qT~~v~~~a~~~----~lp~i~~iNK 146 (709)
T 4fn5_A 82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGT---------S--GVEPQSETVWRQANKY----GVPRIVYVNK 146 (709)
T ss_dssp SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETT---------T--CSCHHHHHHHHHHHHH----TCCEEEEEEC
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECC---------C--CCchhHHHHHHHHHHc----CCCeEEEEcc
Confidence 45789999999999999888888888999999999964 1 2223445566666543 6899999999
Q ss_pred CCchhh
Q 018283 264 FDIFEK 269 (358)
Q Consensus 264 ~Dl~~e 269 (358)
+|....
T Consensus 147 iDr~~a 152 (709)
T 4fn5_A 147 MDRQGA 152 (709)
T ss_dssp SSSTTC
T ss_pred ccccCc
Confidence 998643
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.01 E-value=1.7e-05 Score=82.39 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=43.8
Q ss_pred ceEEEEEecCCCch-------------hhhhHhhhh-cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283 186 GEVYRLFDVGGQRN-------------ERRKWIHLF-EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251 (358)
Q Consensus 186 ~~~l~i~D~~Gq~~-------------~r~~w~~y~-~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~ 251 (358)
...+.++||+|-.. .+.....|. ..++.+++|+|.+. ... -.+.+.++..+..
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~---------~~~-~~d~l~ll~~L~~--- 215 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---------DLA-NSDALKIAKEVDP--- 215 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS---------CSS-SCHHHHHHHHHCT---
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC---------Ccc-hhHHHHHHHHHHh---
Confidence 34689999999533 333445565 47889999999742 100 0122234444422
Q ss_pred CCCCcEEEEeeCCCchhh
Q 018283 252 FEKTSFMLFLNKFDIFEK 269 (358)
Q Consensus 252 ~~~~~iilv~NK~Dl~~e 269 (358)
.+.|+++|+||.|+...
T Consensus 216 -~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 216 -QGQRTIGVITKLDLMDE 232 (772)
T ss_dssp -TCSSEEEEEECTTSSCT
T ss_pred -cCCCEEEEEeCcccCCc
Confidence 26899999999999743
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.63 E-value=9.5e-05 Score=70.83 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=44.0
Q ss_pred cccceEEEEEecCCCchh-------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283 183 KKSGEVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255 (358)
Q Consensus 183 ~~~~~~l~i~D~~Gq~~~-------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 255 (358)
...+..+++.||+|--.- -.......+++|++++|+|.++ ...........++.. ...+.+.
T Consensus 115 ~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~---------p~~~~~~i~~EL~~~--~~~l~~k 183 (376)
T 4a9a_A 115 RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK---------PLHHKQIIEKELEGV--GIRLNKT 183 (376)
T ss_dssp EETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS---------HHHHHHHHHHHHHHT--TEEETCC
T ss_pred EeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc---------cHHHHHHHHHHHHHh--hHhhccC
Confidence 345678999999996322 1223345678999999999852 111111111222221 2234467
Q ss_pred cEEEEeeCCCch
Q 018283 256 SFMLFLNKFDIF 267 (358)
Q Consensus 256 ~iilv~NK~Dl~ 267 (358)
|.++++||.|..
T Consensus 184 ~~~i~~nK~d~~ 195 (376)
T 4a9a_A 184 PPDILIKKKEKG 195 (376)
T ss_dssp CCCEEEEECSSS
T ss_pred ChhhhhhHhhhh
Confidence 888999999963
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.56 E-value=0.00016 Score=69.58 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=29.1
Q ss_pred eEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccc
Q 018283 187 EVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISE 222 (358)
Q Consensus 187 ~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~ 222 (358)
..+.+||++|.. .....+..++++++++++|+|+++
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 468999999953 345577888899999999999875
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.33 E-value=0.00034 Score=64.34 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=63.1
Q ss_pred cCCC-chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhc
Q 018283 194 VGGQ-RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL 272 (358)
Q Consensus 194 ~~Gq-~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~ 272 (358)
.+|+ ...++........+|+||+|+|..+-. ...+ ..+..++ .+.|+++++||+||....
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~------~~~~------~~l~~~l-----~~kp~ilVlNK~DL~~~~-- 66 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPM------SSRN------PMIEDIL-----KNKPRIMLLNKADKADAA-- 66 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTT------TTSC------HHHHHHC-----SSSCEEEEEECGGGSCHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCC------ccCC------HHHHHHH-----CCCCEEEEEECcccCCHH--
Confidence 4555 466777777899999999999985311 1111 1122332 468999999999995421
Q ss_pred cCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283 273 KVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 349 (358)
Q Consensus 273 ~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~ 349 (358)
..+...+|+ .+ ..+.++.+||+++.+++++++.+.+.+-.
T Consensus 67 ---------------------~~~~~~~~~----~~------------~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 ---------------------VTQQWKEHF----EN------------QGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ---------------------HHHHHHHHH----HT------------TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHH----Hh------------cCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 122333332 11 11346779999999999999988877653
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.06 E-value=0.0018 Score=62.95 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.0
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
+++|+|++|||||||++.+-
T Consensus 44 ~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 49999999999999998874
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.95 E-value=0.0003 Score=67.27 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...+++++|.+++||||+++.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~ 183 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRII 183 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHH
Confidence 34689999999999999999874
No 218
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.69 E-value=0.00094 Score=65.79 Aligned_cols=34 Identities=6% Similarity=0.112 Sum_probs=26.7
Q ss_pred EEEEEecCCC--chhhhhH--------hhhhcCCcEEEEEEEcc
Q 018283 188 VYRLFDVGGQ--RNERRKW--------IHLFEGVSAVIFCAAIS 221 (358)
Q Consensus 188 ~l~i~D~~Gq--~~~r~~w--------~~y~~~~~~iIfv~dls 221 (358)
...+||.+|+ .+.|..| ..|+.++.+.++|+|.+
T Consensus 88 ~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~t 131 (469)
T 1bif_A 88 SFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDAT 131 (469)
T ss_dssp CGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3467899999 4557777 77888888989999964
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.67 E-value=0.0066 Score=60.26 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=39.0
Q ss_pred cceEEEEEecCCCchhh-hhHhhh-----hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE-
Q 018283 185 SGEVYRLFDVGGQRNER-RKWIHL-----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF- 257 (358)
Q Consensus 185 ~~~~l~i~D~~Gq~~~r-~~w~~y-----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i- 257 (358)
.+..+.|+||+|..... ..+... .-.++.++||+|.+. ..+.+ .....|... .|+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~---------g~~~~-~~a~~~~~~--------~~i~ 243 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI---------GQACE-AQAKAFKDK--------VDVA 243 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC---------CTTHH-HHHHHHHHH--------HCCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc---------cccHH-HHHHHHHhh--------cCce
Confidence 56789999999986432 223211 237899999999742 12211 222223221 464
Q ss_pred EEEeeCCCch
Q 018283 258 MLFLNKFDIF 267 (358)
Q Consensus 258 ilv~NK~Dl~ 267 (358)
.+|+||.|..
T Consensus 244 gvVlNK~D~~ 253 (504)
T 2j37_W 244 SVIVTKLDGH 253 (504)
T ss_dssp CEEEECTTSC
T ss_pred EEEEeCCccc
Confidence 7889999975
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.55 E-value=0.0013 Score=62.73 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.2
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...+++++|.+++||||+++.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~ 181 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMI 181 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHH
Confidence 34689999999999999999874
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.14 E-value=0.029 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.5
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
...|+++|.+||||||++..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 3568899999999999987763
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.01 E-value=0.01 Score=60.36 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.+.|+|++||||||+++.+..+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 369999999999999999886544
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.99 E-value=0.0038 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.++|+|++||||||+++.+..++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999885444
No 224
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0038 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-++|+|++||||||+++.+...+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999986444
No 225
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.83 E-value=0.0049 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.+++|+|++||||||+++.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999874
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.81 E-value=0.13 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.9
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-|+++|.+||||||++..+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457888999999999988874
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.79 E-value=0.14 Score=46.98 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=17.6
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++++|.+|+||||++..+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57788999999999998875
No 228
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.68 E-value=0.007 Score=50.39 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQTG 74 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~~ 74 (358)
..|+|+|++||||||+++.+...++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999987655443
No 229
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.64 E-value=0.0062 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEecCCCCChhHHHHHHHHhc
Q 018283 50 LLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~ 71 (358)
+.|+|++||||||+++.+..++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999986544
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.61 E-value=0.0055 Score=51.94 Aligned_cols=23 Identities=48% Similarity=0.504 Sum_probs=19.8
Q ss_pred ccEEEecCCCCChhHHHHHHHHh
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l 70 (358)
-.++|+|++||||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999998644
No 231
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.58 E-value=0.0053 Score=51.63 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=16.5
Q ss_pred cEEEecCCCCChhHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQ 66 (358)
Q Consensus 49 killlG~~~sGKSTi~kq 66 (358)
-++|+|++||||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999996
No 232
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.56 E-value=0.0069 Score=51.91 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=19.8
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
--+.|+|++||||||+++.+..++
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 357899999999999999885443
No 233
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.54 E-value=0.086 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.3
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
..|+++|.+||||||++..+-
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999988773
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.0073 Score=51.88 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEecCCCCChhHHHHHHHHh
Q 018283 50 LLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l 70 (358)
|+|+|++|||||||++.+..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999987533
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.54 E-value=0.0081 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.-|+|+|++||||||+++.+...+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578899999999999999865543
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.45 E-value=0.0075 Score=52.28 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=22.0
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
+....|.|+|++|||||||++.+..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345688999999999999999885443
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.38 E-value=0.0066 Score=54.99 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=53.8
Q ss_pred CCC-chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhcc
Q 018283 195 GGQ-RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLK 273 (358)
Q Consensus 195 ~Gq-~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~ 273 (358)
+|| ...++.......++|.+|.|+|..+-. ...+.. +. .. ++|.++++||+||....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~------~~~~~~------l~------ll-~k~~iivlNK~DL~~~~--- 62 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPF------ATSAYG------VD------FS-RKETIILLNKVDIADEK--- 62 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTT------TTSCTT------SC------CT-TSEEEEEEECGGGSCHH---
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCC------cCcChH------HH------hc-CCCcEEEEECccCCCHH---
Confidence 344 334455666789999999999985311 111110 11 11 68999999999995421
Q ss_pred CCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283 274 VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345 (358)
Q Consensus 274 ~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~ 345 (358)
..++..+| |... . +.+ .+||+++.+++.+++.+.+
T Consensus 63 --------------------~~~~~~~~----~~~~----------g--~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 63 --------------------TTKKWVEF----FKKQ----------G--KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp --------------------HHHHHHHH----HHHT----------T--CCE-EECCTTSCHHHHHHHHCCC
T ss_pred --------------------HHHHHHHH----HHHc----------C--CeE-EEECCCCcCHHHHHHHHHH
Confidence 11222333 2211 1 224 7899999999998887643
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.38 E-value=0.009 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhcCC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-|+|.|.+||||||+.+.+...++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999998654433
No 239
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.36 E-value=0.0088 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.4
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..-.+.|+|++||||||+++.+..++
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34478999999999999999886444
No 240
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.36 E-value=0.0095 Score=52.45 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=21.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
..--++|+|++|||||||++.+..+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 444688999999999999998865443
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.33 E-value=0.0093 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.3
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.--+.|+|++||||||+++.+..++
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3357899999999999999885444
No 242
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.32 E-value=0.02 Score=50.92 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=23.1
Q ss_pred hhccccEEEecCCCCChhHHHHHHHHhc
Q 018283 44 EKHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 44 ~~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.++...|+|.|++||||||+.+.+..-+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4466789999999999999999985333
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.18 E-value=0.011 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.|+|.|.+||||||+.+.+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999985433
No 244
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.18 E-value=0.0099 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
+.+.|+|++|||||||++.+..+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999886444
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.18 E-value=0.011 Score=51.09 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.4
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
...|.|+|++||||||+++.+..+++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999865443
No 246
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.17 E-value=0.012 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.7
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
...|.|+|++||||||+++.+...++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999865443
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.16 E-value=0.011 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-|+|+|++|||||||++.+...+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57889999999999999886444
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.15 E-value=0.01 Score=49.00 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=17.7
Q ss_pred cEEEecCCCCChhHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~ 67 (358)
-|+|.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.011 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=20.7
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...|+|+|++||||||+++.+...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999886444
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.10 E-value=0.01 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||++-+..+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 578999999999999998865543
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.10 E-value=0.011 Score=50.21 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.9
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++||||||+++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 46899999999999999885
No 252
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.00 E-value=0.015 Score=48.46 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=20.8
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..-.+.|+|+.|||||||+|-+..+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33468899999999999999885443
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.99 E-value=0.012 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.9
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...-|+|+|++||||||+.+.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999999985
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.95 E-value=0.014 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.5
Q ss_pred ccccEEEecCCCCChhHHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~ 69 (358)
+...|+|.|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999853
No 255
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.95 E-value=0.015 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.2
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
++|+|.|++||||||+.+.+.--+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999984333
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.94 E-value=0.013 Score=48.95 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.5
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
-|+|.|.+||||||+.+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999853
No 257
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.94 E-value=0.012 Score=51.89 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++|||||||++++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999875
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.91 E-value=0.011 Score=52.89 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=22.3
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.....|+|+|.+||||||+.+.+...++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445789999999999999999864443
No 259
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.91 E-value=0.015 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.6
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..-|+|+|++||||||+++.+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468899999999999999985443
No 260
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.89 E-value=0.016 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
++|+|.|++||||||+.+.+.--+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999985433
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.87 E-value=0.015 Score=49.93 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=22.9
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcCCCC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQTGF 75 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~~~f 75 (358)
...|+|+|++||||||+.+.+...++-.|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 44789999999999999999865544433
No 262
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.85 E-value=0.013 Score=55.48 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=23.5
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
.-++.|+|++|||||||++.+..++.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999777654
No 263
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.85 E-value=0.021 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.7
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...-|+|+|++||||||+++.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999885
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.84 E-value=0.013 Score=51.77 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999998865543
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.83 E-value=0.016 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.5
Q ss_pred ccEEEecCCCCChhHHHHHHHHh
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l 70 (358)
..|+|+|++||||||+++.+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36889999999999999988543
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.77 E-value=0.015 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999998865543
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.77 E-value=0.017 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.6
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...|+|.|.+||||||+.+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999985433
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.77 E-value=0.017 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.0
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
.|+|.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999864
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.76 E-value=0.039 Score=44.76 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHH
Q 018283 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 32 ~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~ 68 (358)
.+.+..+.-+.......-|++.|++|+|||++++.+.
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3444443333334566789999999999999998763
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.73 E-value=0.015 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.6
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
...|+|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999985
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.70 E-value=0.015 Score=50.53 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.9
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
-++|+|++||||||+++++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999854
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.70 E-value=0.015 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|.+..++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999998865553
No 273
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.68 E-value=0.013 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.3
Q ss_pred EEEecCCCCChhHHHHHHHHhc
Q 018283 50 LLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~ 71 (358)
|+|+|++||||+|..+.+..-|
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5578999999999999886444
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.68 E-value=0.019 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=20.9
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.|+|+|++||||+|..+.+..-|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4689999999999999999864443
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.67 E-value=0.015 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|.+..+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 578999999999999998865553
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.60 E-value=0.021 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=21.8
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
+...|+|+|.+||||||+.+.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999985443
No 277
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.60 E-value=0.018 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.7
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
.|+|.|.+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999853
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.59 E-value=0.016 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++|||||||+|.+..+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999998865543
No 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.59 E-value=0.016 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||+|-+..+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999886444
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.58 E-value=0.016 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999998865543
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.56 E-value=0.017 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||++-+..++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999998865553
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.51 E-value=0.017 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999998865543
No 283
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.49 E-value=0.019 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
+|.|+|..||||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.47 E-value=0.021 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.0
Q ss_pred ccccEEEecCCCCChhHHHHHHHHh
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l 70 (358)
+...|+|.|.+||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998643
No 285
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.47 E-value=0.025 Score=48.02 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=21.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
....|+|.|.+||||||+.+.+...+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999986444
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.46 E-value=0.017 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 578999999999999998865553
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.46 E-value=0.022 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.7
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
..|+|+|.+||||||+.+.+...++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999854443
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.46 E-value=0.018 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 688999999999999998865543
No 289
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.45 E-value=0.018 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..++.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999998865554
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.44 E-value=0.019 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHh
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l 70 (358)
..-|+|.|.+||||||+.+.+..-
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998543
No 291
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.43 E-value=0.019 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||+|-+..++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999885443
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.43 E-value=0.02 Score=48.23 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.5
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
..|+|.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.42 E-value=0.023 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
++|+|.|.+||||||+.+.+..-+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999986433
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.40 E-value=0.026 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=22.1
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+...|+|.|.+||||||+.+.+...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445679999999999999999986433
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.40 E-value=0.019 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 578999999999999998865543
No 296
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.34 E-value=0.026 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
+|+|.|.+||||||+.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986533
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.34 E-value=0.02 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999998865543
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.33 E-value=0.025 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+|+|+|.+||||||+.+.+...++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999854443
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.33 E-value=0.02 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999998865543
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.33 E-value=0.019 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHh
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l 70 (358)
-.+.|+|++|||||||++.+..+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999987533
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.24 E-value=0.022 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=21.7
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
...-|.|+|++||||||+++.+..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344688999999999999999865543
No 302
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.24 E-value=0.06 Score=49.84 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=31.0
Q ss_pred HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283 204 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268 (358)
Q Consensus 204 w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 268 (358)
+..-..++|.+++|+|..+ +..+. .. ++-+-.... ..++|.+||+||+||..
T Consensus 80 ~R~~~anvD~v~~V~~~~~--------p~~~~-~~-i~r~L~~~~---~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQ--------PSFST-AL-LDRFLVLVE---ANDIQPIICITKMDLIE 131 (307)
T ss_dssp TTTTEECCCEEEEEEESTT--------TTCCH-HH-HHHHHHHHH---TTTCEEEEEEECGGGCC
T ss_pred hHHHHHhCCEEEEEEeCCC--------CCCCH-HH-HHHHHHHHH---HCCCCEEEEEECCccCc
Confidence 3345789999999999732 22221 11 111111111 13678999999999953
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.23 E-value=0.024 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.4
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
..-.++|+|++||||||+++.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 33368999999999999999874
No 304
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.22 E-value=0.021 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.-.++|+|++|+||||+++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999874
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.18 E-value=0.022 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|.+..+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999998865543
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.17 E-value=0.023 Score=51.53 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999998865543
No 307
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.16 E-value=0.023 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.4
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
.+.|+|++|||||||+|-+..+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988654
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.13 E-value=0.016 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=14.5
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
--+.|+|++||||||+++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999875
No 309
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.12 E-value=0.023 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++|||||||+|-+..+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 688999999999999998865543
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.11 E-value=0.028 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.6
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
++...|+|.|.+||||||+.+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999885
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.11 E-value=0.028 Score=48.16 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
++.++|++||||||+++.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68999999999999999874
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.11 E-value=0.024 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||+|-+..++
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999886544
No 313
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.10 E-value=0.028 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.1
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
+...|+|.|.+||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999885
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.07 E-value=0.042 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...-.++|+|++|||||||++.+..++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445579999999999999999986554
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.04 E-value=0.029 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.6
Q ss_pred cccEEEecCCCCChhHHHHHHHHh
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l 70 (358)
...|+|+|.+||||||+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998643
No 316
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.04 E-value=0.017 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcCC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
.+.|+|++|||||||++.+..++.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 6889999999999999988666643
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.03 E-value=0.027 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHh
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l 70 (358)
...|++.|.+||||||+.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 346899999999999999988533
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.01 E-value=0.027 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|.+..+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 578999999999999998876553
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.00 E-value=0.034 Score=47.58 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.7
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..+.|+|.|.+||||||+.+.+...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999986443
No 320
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.00 E-value=0.045 Score=50.26 Aligned_cols=27 Identities=30% Similarity=0.155 Sum_probs=21.7
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+...|.|.|++||||||+++.+..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999885333
No 321
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.00 E-value=0.041 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=19.7
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
....|.|+|++||||||+++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999875
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.00 E-value=0.03 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=21.5
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
....|.|+|+.||||||+++.+..++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999886543
No 323
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.00 E-value=0.034 Score=48.41 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.0
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...|+|+|.+||||||+.+.+..-+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999985444
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.97 E-value=0.035 Score=46.54 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-.+|+|+.|||||||++.+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467899999999999999865544
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.97 E-value=0.028 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=19.1
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
.|.|+|+.||||||+.+.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.95 E-value=0.035 Score=46.64 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=20.9
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
..|+|.|.+||||||+.+.+...++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999865443
No 327
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.93 E-value=0.027 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.4
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
.+.|+|++|||||||+|-+..+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988654
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.93 E-value=0.033 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.219 Sum_probs=19.4
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
..|+|.|.+||||||+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.89 E-value=0.034 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
..|+|.|.+||||||+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 330
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.89 E-value=0.036 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.0
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...|+|.|.+||||||+.+.+..-+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999986433
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.88 E-value=0.017 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++||||||+++.+..++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999885444
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.79 E-value=0.039 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=20.4
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..-|+|.|++||||||+.+.+..-+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999985433
No 333
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.76 E-value=0.035 Score=46.74 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
.|+|.|.+||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999885
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.73 E-value=0.033 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999998865553
No 335
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.73 E-value=0.033 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.431 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 578999999999999999876654
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.72 E-value=0.033 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 578999999999999999876654
No 337
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.72 E-value=0.21 Score=47.18 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=16.2
Q ss_pred EEEEEeeccChhhHHHHHHHH
Q 018283 323 FKIYRTTALDPKLVKKTFKLV 343 (358)
Q Consensus 323 ~~~~~tSA~d~~ni~~vf~~i 343 (358)
+..+.+||+++.+++.+-..+
T Consensus 193 ~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 193 YRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CCEEECBTTTTBTHHHHHHHH
T ss_pred CcEEEEecCCCcCHHHHHHhc
Confidence 446789999999988876543
No 338
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.029 Score=50.73 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||+|-+..+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999886544
No 339
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.72 E-value=0.042 Score=47.79 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=21.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|+|.+||||||+.+.+..-+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999985433
No 340
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.69 E-value=0.034 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++|||||||+|.+..+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 478999999999999999876654
No 341
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.67 E-value=0.036 Score=46.88 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.1
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-|+|.|.+||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.67 E-value=0.04 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.|+|.|.+||||||+.+.+...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986433
No 343
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.66 E-value=0.039 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.3
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
.|+|.|.+||||||+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998543
No 344
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.66 E-value=0.036 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred cccEEEecCCCCChhHHHHHHHHh
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l 70 (358)
...|.|+|++||||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 446889999999999999998643
No 345
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.65 E-value=0.034 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.9
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++||||||+++++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999999974
No 346
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.62 E-value=0.035 Score=52.67 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 578999999999999999876553
No 347
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.61 E-value=0.035 Score=52.86 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 578999999999999999876653
No 348
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.59 E-value=0.045 Score=46.74 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=20.4
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...|+|.|.+||||||+.+.+..-+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999885433
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.57 E-value=0.035 Score=49.78 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.3
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
|+|+|++||||||+.+++.
T Consensus 4 i~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 6889999999999999874
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.57 E-value=0.042 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.2
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
.|+|.|.+||||||+.+.+...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998543
No 351
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.57 E-value=0.036 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=20.2
Q ss_pred cccEEEecCCCCChhHHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~ 69 (358)
.+-|+|.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999865
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.56 E-value=0.084 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.9
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+...|.|+|++||||||+++.+..++.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999865543
No 353
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.54 E-value=0.037 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 578999999999999999866553
No 354
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.54 E-value=0.039 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.0
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
....|.|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999885
No 355
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.50 E-value=0.035 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
++|+|++|+||||+++.+....+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999998864443
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.50 E-value=0.038 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.5
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
+..-|+|.|.+||||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34568899999999999999874
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.42 E-value=0.03 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||+|-+..+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999886544
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.39 E-value=0.035 Score=46.41 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=16.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..|+|.|.+||||||+.+.+...+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999985433
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.35 E-value=0.04 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=20.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
--++++|++||||||+++.+..++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999886444
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.34 E-value=0.045 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.2
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
+-|.|+|++||||||+++.+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999886554
No 361
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.34 E-value=0.065 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...-|+|.|.+||||||+.+.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 44568899999999999999885
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.31 E-value=0.041 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.8
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-|+|.|.+||||||+.+.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999999985
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.30 E-value=0.044 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.2
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
...|+|.|.+||||||+++.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999885
No 364
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.27 E-value=0.03 Score=52.81 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 578999999999999999876654
No 365
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.26 E-value=0.043 Score=47.21 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++|||||||++++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999984
No 366
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.24 E-value=0.059 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.8
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.--++|.|++|+|||++++.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3468999999999999998873
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.20 E-value=0.021 Score=49.14 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.8
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-|++.|.+||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 368
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.19 E-value=0.044 Score=46.55 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.4
Q ss_pred ccccEEEecCCCCChhHHHHHHHHh
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l 70 (358)
+...|.|.|..||||||+.+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3457899999999999999998755
No 369
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.17 E-value=0.054 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-|+|.|..||||||+.+.+...++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999865333
No 370
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.17 E-value=0.094 Score=50.59 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=21.8
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhc
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.....+.|+|++||||||+++.+..+.
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999886443
No 371
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.15 E-value=0.064 Score=43.37 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.7
Q ss_pred hccccEEEecCCCCChhHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~ 67 (358)
.....|++.|++|+|||++++.+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45567999999999999998765
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.08 E-value=0.054 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
++|+|++|+||||+++.+.....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999998854433
No 373
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.03 E-value=0.05 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.9
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-++++|.+||||||+++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 357889999999999998873
No 374
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.93 E-value=0.11 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.2
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
-.++++|++|+||||+++.+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999885443
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.89 E-value=0.093 Score=49.62 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=22.7
Q ss_pred hccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+..-.++|+|++||||||+++.+..++.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3455899999999999999998865443
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.85 E-value=0.066 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=21.7
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
....|+|+|.+||||||+.+.+..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999986444
No 377
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.84 E-value=0.053 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.1
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
--++|+|++||||||+++++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999999854
No 378
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.80 E-value=0.051 Score=50.78 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=21.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
..-.++++|++||||||+++.+-.++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344799999999999999998754443
No 379
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.78 E-value=0.052 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.0
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|++|+|||||++++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999998533
No 380
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.76 E-value=0.032 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||++|-+..+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999998866553
No 381
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.74 E-value=0.11 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.1
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
...++++++|.+++||||+++.+.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 356789999999999999999874
No 382
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.70 E-value=0.05 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.2
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
--++|+|++|+||||+++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999998864
No 383
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.66 E-value=0.063 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.6
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
.-+.++|++|||||||++.+. +.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999986 44
No 384
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.62 E-value=0.056 Score=51.12 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++++|+.||||||+++.+-
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999873
No 385
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.61 E-value=0.061 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.0
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
...++|.|++|+||||+++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998874
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.60 E-value=0.057 Score=48.44 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=22.1
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
.-.|+|+|.+||||||+.+.+....+-
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 447999999999999999998654443
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.59 E-value=0.056 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.8
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++||||||+++-+..+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999886543
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.57 E-value=0.042 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.5
Q ss_pred ccccEEEecCCCCChhHHHHHHHHh
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l 70 (358)
+..-|.|.|++||||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3446889999999999999987544
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.53 E-value=0.066 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.9
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|++||||||+++.+..+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999987543
No 390
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.49 E-value=0.076 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.5
Q ss_pred ccccEEEecCCCCChhHHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~ 69 (358)
+.+.|.|.|.+||||||+.+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999998854
No 391
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.15 Score=49.97 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=22.0
Q ss_pred hhccccEEEecCCCCChhHHHHHHHHh
Q 018283 44 EKHIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 44 ~~~~~killlG~~~sGKSTi~kq~~~l 70 (358)
....-.++|+|++|||||||+|-+..+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 345568999999999999999987533
No 392
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.40 E-value=0.074 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
++|+|++|+||||+++.+.....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999998854443
No 393
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.39 E-value=0.062 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=19.8
Q ss_pred ccEEEecCCCCChhHHHHHHHHhc
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~ 71 (358)
--+.++|++||||||+++.+..+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999885443
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.36 E-value=0.082 Score=46.91 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.1
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..+.|++.|++||||||+.+.+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999885433
No 395
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.27 E-value=0.067 Score=48.37 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++|||||||++++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999985
No 396
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.25 E-value=0.072 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.0
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.-.++|+|++||||||+++.+-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3368999999999999999874
No 397
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.15 E-value=0.071 Score=48.56 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.7
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
-|+|.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 398
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.14 E-value=0.076 Score=45.19 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.5
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
++++|.++|||||+..|+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999874
No 399
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.13 E-value=0.074 Score=47.96 Aligned_cols=21 Identities=38% Similarity=0.765 Sum_probs=19.5
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.+++++|.+++|||||++.+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 699999999999999999875
No 400
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.07 E-value=0.081 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=19.9
Q ss_pred cccEEEecCCCCChhHHHHHHHHh
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l 70 (358)
..-++++|++||||||+++.+..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446889999999999999987533
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.07 E-value=0.091 Score=45.06 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.5
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
..+.|.|.|..||||||+.+.+...++
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999976543
No 402
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.01 E-value=0.093 Score=49.40 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=23.3
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
+.-++.|+|++|+||||+++.+..+..+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4558999999999999999998666543
No 403
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.00 E-value=0.075 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.8
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
-.++|+|++|||||||++.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 368999999999999999875
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.96 E-value=0.068 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.4
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|..||||||+++.+-..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999987543
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.91 E-value=0.085 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.0
Q ss_pred cccEEEecCCCCChhHHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~ 69 (358)
.+.|+|.|.+||||||+.+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999873
No 406
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.82 E-value=0.089 Score=44.27 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.3
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-+.+.|.+||||||++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47789999999999998863
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.82 E-value=0.1 Score=45.98 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHh
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l 70 (358)
+..-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456889999999999999988533
No 408
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.82 E-value=0.078 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-++.++|++||||||++|-+..++.+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 36889999999999999998766643
No 409
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.82 E-value=0.076 Score=53.54 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
++.++|++||||||+++-+..++.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 688999999999999999866654
No 410
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.79 E-value=0.18 Score=43.60 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.8
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
..-.++|.|++|+||||+++.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35579999999999999999873
No 411
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.76 E-value=0.095 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
..++|+|++|+||||+++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 359999999999999999874
No 412
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.75 E-value=0.1 Score=50.79 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.-++.|+|++|||||||++.+..+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 455899999999999999999866654
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.66 E-value=0.092 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.9
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|.+||||||+++.+..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHH
Confidence 5889999999999999987533
No 414
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.59 E-value=0.1 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=18.9
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|+.||||||+++.+-.+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999987433
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.59 E-value=0.11 Score=44.19 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.|.|.|..||||||+.+.+...++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999865443
No 416
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.56 E-value=0.1 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-+.|+|++||||||+++.+..+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCC
Confidence 578999999999999998865553
No 417
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.52 E-value=0.25 Score=45.57 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcC
Q 018283 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 33 id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+...+..-.........|||.|++|+|||++++.+....+
T Consensus 41 l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 41 LNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4444443322233445799999999999999998854433
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.50 E-value=0.1 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.9
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-++|+|++||||||+++.+..+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 5889999999999999987543
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.33 E-value=0.12 Score=42.20 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.5
Q ss_pred EEEecCCCCChhHHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~ 69 (358)
.+++|+.|||||||+..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999999998863
No 420
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.27 E-value=0.081 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.++|++||||||+++-+..++.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 688999999999999999866654
No 421
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.24 E-value=0.24 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.5
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
....-|+|.|++|+|||++++.+.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHH
Confidence 345689999999999999998874
No 422
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.19 E-value=0.23 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.1
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...-++++|+.||||||+++.+..+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34459999999999999999885444
No 423
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.17 E-value=0.087 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=21.9
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-++.++|++||||||+++-+..++.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 36899999999999999988766643
No 424
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.06 E-value=0.12 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.4
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-++|.|++|+||||+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998763
No 425
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.02 E-value=0.11 Score=45.35 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.1
Q ss_pred cEEEecCCCCChhHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~ 67 (358)
-++|+|++|+|||||+.|+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998887
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.97 E-value=0.26 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=18.0
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
.++|.|++|+|||++++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999873
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.97 E-value=0.15 Score=44.86 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=21.8
Q ss_pred hccccEEEecCCCCChhHHHHHHHHh
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~~l 70 (358)
.....|.|+|..||||||+.+.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988643
No 428
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.95 E-value=0.048 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
-.++++|++|||||||++.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 468999999999999999874
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.88 E-value=0.29 Score=41.86 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.8
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|.|++|+||||+++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999873
No 430
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.83 E-value=0.11 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.7
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-++|+|++|||||||++++....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999986443
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.83 E-value=0.12 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-.+.|+|++|||||||+|-+..+..+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36889999999999999998766543
No 432
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.78 E-value=0.11 Score=51.60 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.9
Q ss_pred ccEEEecCCCCChhHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~ 67 (358)
--++|+|++|||||||++++
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 36889999999999999993
No 433
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.45 E-value=0.13 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.2
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-|+|+|.+||||||+.+++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357788999999999999874
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.25 E-value=0.14 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.|+|++||||||++|-+..+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 578999999999999999876654
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.22 E-value=0.14 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=19.6
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
....+||.|++|+|||++++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34469999999999999999874
No 436
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.13 E-value=0.14 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhcCC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-+.|+|++||||||++|-+..++.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4679999999999999998766543
No 437
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.10 E-value=0.15 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.3
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-+||.|++|+||||+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3479999999999999999874
No 438
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.05 E-value=0.085 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.+.++|++||||||+++-+..++.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 688999999999999998765554
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.99 E-value=0.16 Score=44.92 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.5
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-+||.|++|+|||++++.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999874
No 440
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.97 E-value=0.15 Score=46.68 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.2
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
--|||.|++|+|||++++.+....+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 35999999999999999998654443
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.83 E-value=0.16 Score=47.10 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHH-hcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKL-LFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~-l~~ 72 (358)
.+++.|++|+||||+++.+.. ++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 399999999999999998854 443
No 442
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.79 E-value=0.35 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.1
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
...|+|+|++||||||+.+.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3469999999999999999874
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.69 E-value=0.23 Score=42.77 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.|.|.|..||||||+.+.+...++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999865443
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.68 E-value=0.49 Score=42.85 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.3
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
..+||.|++|+|||++++.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 359999999999999998763
No 445
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.65 E-value=0.16 Score=48.71 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.9
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++|||||||++++.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999874
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.63 E-value=0.11 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.6
Q ss_pred cccEEEecCCCCChhHHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~ 69 (358)
..-|.|-|++||||||+.+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 44588999999999999999864
No 447
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.54 E-value=0.19 Score=43.27 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEEecCCCCChhHHHHHHHHhc
Q 018283 50 LLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~ 71 (358)
.+++|+.|||||||+..+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5788999999999999886433
No 448
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.54 E-value=0.11 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
++.++|++||||||+++-+..++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 688999999999999998765554
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.50 E-value=0.19 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=18.8
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
-.++++|++||||||++..+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999988753
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.40 E-value=0.33 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.0
Q ss_pred ccccEEEecCCCCChhHHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~ 69 (358)
..-.++|+|++||||||+++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999998753
No 451
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.32 E-value=0.31 Score=44.54 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.9
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
...-++|.|++|+|||++++.+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999874
No 452
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.27 E-value=0.18 Score=46.35 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=18.8
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
--++|.|++|+||||+++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 469999999999999999874
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.20 E-value=0.17 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-.+.|+|++|||||||+|-+..+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3688999999999999998876553
No 454
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.14 E-value=0.23 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.6
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
-|+|.|++||||||+.+.+...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4788999999999999887543
No 455
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.10 E-value=0.41 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
....-|||.|++|+|||++++.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 456689999999999999998874
No 456
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.95 E-value=0.48 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.0
Q ss_pred cccEEEecCCCCChhHHHHHHHHhc
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
...+++.|++|+|||++++.+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999885444
No 457
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.94 E-value=0.28 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
.-|+|.|.+||||||+.+.+.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La 73 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALE 73 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999884
No 458
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.94 E-value=0.25 Score=43.60 Aligned_cols=26 Identities=46% Similarity=0.565 Sum_probs=21.0
Q ss_pred ccccEEEecCCCCChhHHHHHHHHhc
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l~ 71 (358)
..+++.|+|++||||||+.+.+..-+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999885444
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.84 E-value=0.13 Score=46.01 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=20.7
Q ss_pred ccccEEEecCCCCChhHHHHHHHHh
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l 70 (358)
+..-|++.|..||||||+++.+..-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4557889999999999999987533
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.80 E-value=0.21 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.9
Q ss_pred cEEEecCCCCChhHHHHHHHHh
Q 018283 49 KLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l 70 (358)
.|+|+|++||||||+.+.+..-
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999987543
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.72 E-value=0.22 Score=43.06 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=18.6
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
...|+++|++|+||||+...+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999988763
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.69 E-value=0.22 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|+.|||||||+|.+..+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999986554
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.69 E-value=0.24 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=19.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-++++|++||||||++..+...+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 47799999999999998875433
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.69 E-value=0.2 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.5
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|++|||||||+|.+..+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999886544
No 465
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.58 E-value=0.56 Score=43.91 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=22.5
Q ss_pred cccEEEecCCCCChhHHHHHHHHhcCCC
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKLLFQTG 74 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~l~~~~ 74 (358)
...|||.|++|+|||++++.+....+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~ 78 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVP 78 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3469999999999999999986554433
No 466
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.44 E-value=0.23 Score=46.99 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.2
Q ss_pred EEEecCCCCChhHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~ 68 (358)
.+|+|+.|||||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999875
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.40 E-value=0.24 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=18.9
Q ss_pred ccEEEecCCCCChhHHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~ 69 (358)
.-|++-|..||||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999998853
No 468
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.37 E-value=0.32 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.7
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
..-.+||+|++|+|||++++.+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999874
No 469
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.31 E-value=0.23 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.1
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
.--++|.|++|+||||+++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999874
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.30 E-value=0.24 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
.+.|+|+.|||||||+|.+..+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999986554
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.25 E-value=0.25 Score=44.22 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.0
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-+||.|++|+|||++++.+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4468999999999999998874
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.25 E-value=0.16 Score=50.87 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.6
Q ss_pred ccccEEEecCCCCChhHHHHHHHHh
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~~l 70 (358)
+...++|+|.+||||||+++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4456899999999999999988533
No 473
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.23 E-value=0.5 Score=44.08 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.3
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
--++|.|++|+||||+++.+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 368899999999999998873
No 474
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.23 E-value=0.24 Score=44.99 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.2
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-+++.|++|+|||++++.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999999874
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.18 E-value=0.25 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
+.|+|++|||||||++.+..+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999998865553
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.15 E-value=0.5 Score=43.78 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.1
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
.+++.|++|+||||+++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999874
No 477
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.04 E-value=0.11 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEecCCCCChhHHHHHHHHhcC
Q 018283 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~l~~ 72 (358)
++|+|++|||||||++.+..+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36889999999999998865554
No 478
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.01 E-value=0.26 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.5
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-+++.|++|+|||++++.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999874
No 479
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=87.97 E-value=0.26 Score=51.29 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.1
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|++||||||++|++-
T Consensus 578 i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 47899999999999999985
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.96 E-value=0.28 Score=41.49 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.6
Q ss_pred ccEEEecCCCCChhHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQI 67 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~ 67 (358)
.-||+.|++|+||||+...+
T Consensus 17 ~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 35899999999999998776
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.90 E-value=0.34 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=18.5
Q ss_pred ccEEEecCCCCChhHHHHHHHHh
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLL 70 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l 70 (358)
.-+||.|++|+|||++++.+..-
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34667799999999999988533
No 482
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.70 E-value=0.27 Score=46.41 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.6
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
=++|+|++|||||||+.++.
T Consensus 63 i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999999974
No 483
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.63 E-value=0.33 Score=46.73 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.2
Q ss_pred cEEEecCCCCChhHHHHHHHHhcCC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-++++|+.|||||||++.+..+..+
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3688999999999999999876654
No 484
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.59 E-value=0.57 Score=45.31 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.3
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-|||.|++|+|||++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999874
No 485
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.55 E-value=0.29 Score=45.84 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.3
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~ 69 (358)
-|+|+|+.|||||||...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998853
No 486
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.55 E-value=0.28 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.7
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
--|||.|++|+|||++++.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 359999999999999999874
No 487
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=87.50 E-value=0.29 Score=51.18 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.1
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|+|+.||||||++|++-
T Consensus 609 i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 47899999999999999985
No 488
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.50 E-value=0.25 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHhc
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLF 71 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~ 71 (358)
-++|+|++|+||||+++.+....
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999986544
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.48 E-value=0.31 Score=42.43 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=18.5
Q ss_pred cccEEEecCCCCChhHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~ 68 (358)
..-|++.|.+||||||+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3457888999999999999874
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.46 E-value=0.27 Score=43.27 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=17.0
Q ss_pred hccccEEEecCCCCChhHHHHHHH
Q 018283 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 45 ~~~~killlG~~~sGKSTi~kq~~ 68 (358)
.+..-|++.|.+||||||+++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345568899999999999999874
No 491
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.33 E-value=0.19 Score=55.55 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.4
Q ss_pred ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~~l~~~ 73 (358)
-||.++|++||||||+++-+-.+|.+
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCccC
Confidence 37899999999999999998777653
No 492
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.32 E-value=0.29 Score=45.74 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.1
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|.|++|+||||+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 493
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.17 E-value=0.14 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
.++|+|+.|||||||++-+..+.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999876665
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.15 E-value=0.3 Score=45.03 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.8
Q ss_pred ccEEEecCCCCChhHHHHHHH
Q 018283 48 QKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 48 ~killlG~~~sGKSTi~kq~~ 68 (358)
..|||.|++|+|||++++.+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 359999999999999999875
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.08 E-value=0.22 Score=44.28 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.0
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|.|++|+|||++++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48999999999999999874
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.93 E-value=0.3 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.6
Q ss_pred cccEEEecCCCCChhHHHHHHHH
Q 018283 47 IQKLLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 47 ~~killlG~~~sGKSTi~kq~~~ 69 (358)
.--++|+|++|||||||++++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999999853
No 497
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.86 E-value=0.33 Score=45.02 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=17.5
Q ss_pred EEEecCCCCChhHHHHHHHH
Q 018283 50 LLLLGAGESGKSTIFKQIKL 69 (358)
Q Consensus 50 illlG~~~sGKSTi~kq~~~ 69 (358)
|+|.|++||||||+...+..
T Consensus 6 i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 67889999999999998853
No 498
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.84 E-value=0.34 Score=44.74 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHhcC
Q 018283 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~~l~~ 72 (358)
-.+++|+.|||||||++.+..+.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 468899999999999999876653
No 499
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.83 E-value=0.3 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.4
Q ss_pred ccccEEEecCCCCChhHHHHHHH
Q 018283 46 HIQKLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 46 ~~~killlG~~~sGKSTi~kq~~ 68 (358)
..--++|.|++|+||||+++.+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 34469999999999999998873
No 500
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.79 E-value=0.59 Score=42.76 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.0
Q ss_pred cEEEecCCCCChhHHHHHHH
Q 018283 49 KLLLLGAGESGKSTIFKQIK 68 (358)
Q Consensus 49 killlG~~~sGKSTi~kq~~ 68 (358)
-++|.|+.|+||||+++++.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHH
Confidence 57888999999999999874
Done!