Query 018284
Match_columns 358
No_of_seqs 181 out of 243
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 6.3E-35 1.4E-39 234.1 7.4 79 154-232 1-80 (80)
2 smart00338 BRLZ basic region l 98.5 2.7E-07 5.9E-12 70.7 6.5 45 70-114 2-46 (65)
3 PF00170 bZIP_1: bZIP transcri 98.3 1.4E-06 3.1E-11 66.6 5.7 39 71-112 3-41 (64)
4 PF07716 bZIP_2: Basic region 98.3 1.7E-06 3.7E-11 64.4 5.8 40 71-114 3-42 (54)
5 KOG3584 cAMP response element 97.3 0.00027 5.8E-09 69.4 4.5 32 72-103 290-321 (348)
6 PF13801 Metal_resist: Heavy-m 96.7 0.046 1E-06 44.3 12.4 85 234-332 40-124 (125)
7 PRK12750 cpxP periplasmic repr 95.9 0.36 7.9E-06 44.1 14.6 96 230-341 48-152 (170)
8 PF03131 bZIP_Maf: bZIP Maf tr 95.8 0.009 2E-07 49.0 3.4 33 72-104 29-61 (92)
9 COG3678 CpxP P pilus assembly/ 95.6 0.21 4.6E-06 45.4 11.6 107 215-340 39-145 (160)
10 KOG0709 CREB/ATF family transc 93.9 0.058 1.3E-06 56.2 3.9 43 73-115 251-293 (472)
11 KOG4343 bZIP transcription fac 92.6 0.2 4.4E-06 53.2 5.6 42 70-114 275-319 (655)
12 KOG0837 Transcriptional activa 91.0 0.44 9.6E-06 46.6 5.6 30 73-102 206-235 (279)
13 PRK12751 cpxP periplasmic stre 90.6 6.9 0.00015 35.7 12.7 103 231-351 53-155 (162)
14 PRK10455 periplasmic protein; 90.5 3.3 7.1E-05 37.7 10.4 102 212-336 35-140 (161)
15 PRK10363 cpxP periplasmic repr 89.7 6.8 0.00015 36.1 11.8 99 232-351 48-149 (166)
16 PF07813 LTXXQ: LTXXQ motif fa 86.5 4 8.7E-05 32.3 7.5 82 232-334 12-96 (100)
17 KOG3725 SH3 domain protein SH3 71.2 38 0.00083 33.8 10.0 21 172-192 237-257 (375)
18 KOG4005 Transcription factor X 63.3 18 0.00039 35.5 5.9 33 70-102 66-98 (292)
19 KOG4571 Activating transcripti 59.0 36 0.00078 34.1 7.3 51 68-118 221-283 (294)
20 KOG3119 Basic region leucine z 57.9 22 0.00047 34.7 5.6 24 71-94 192-215 (269)
21 PF13628 DUF4142: Domain of un 51.9 1.5E+02 0.0033 25.3 9.5 97 89-188 30-134 (139)
22 PF11459 DUF2893: Protein of u 36.7 82 0.0018 25.1 4.8 41 302-342 21-61 (69)
23 PRK11702 hypothetical protein; 33.4 19 0.00042 31.1 0.8 13 86-98 5-17 (108)
24 KOG2202 U2 snRNP splicing fact 30.1 74 0.0016 31.4 4.3 62 138-208 75-136 (260)
25 COG3130 Rmf Ribosome modulatio 28.8 14 0.0003 28.0 -0.7 14 210-223 34-47 (55)
26 cd00223 TOPRIM_TopoIIB_SPO TOP 25.9 73 0.0016 28.2 3.2 39 213-252 89-127 (160)
27 PF09789 DUF2353: Uncharacteri 25.4 75 0.0016 32.2 3.5 46 70-115 100-151 (319)
28 PF10552 ORF6C: ORF6C domain; 25.1 4.2E+02 0.0091 22.3 8.5 43 174-228 69-113 (116)
29 PF02181 FH2: Formin Homology 24.7 6.9E+02 0.015 24.7 11.0 175 138-343 163-367 (370)
30 PF13586 DDE_Tnp_1_2: Transpos 23.9 32 0.0007 27.3 0.5 19 204-222 44-62 (88)
31 PRK10628 LigB family dioxygena 23.4 2.4E+02 0.0051 27.5 6.4 47 105-151 126-178 (246)
32 PF07889 DUF1664: Protein of u 23.1 1.9E+02 0.0042 25.5 5.2 21 213-233 21-41 (126)
33 PLN02796 D-glycerate 3-kinase 22.8 1.2E+02 0.0026 31.1 4.4 43 145-190 278-320 (347)
34 KOG3759 Uncharacterized RUN do 22.3 2.2E+02 0.0049 30.7 6.3 82 87-193 142-228 (621)
35 PF00589 Phage_integrase: Phag 22.0 33 0.00072 28.6 0.3 21 213-233 28-48 (173)
36 KOG2391 Vacuolar sorting prote 21.5 6E+02 0.013 26.4 9.0 25 244-268 244-268 (365)
37 PTZ00446 vacuolar sorting prot 21.4 1.9E+02 0.0041 27.2 5.2 38 77-114 60-98 (191)
38 PRK14563 ribosome modulation f 20.8 25 0.00053 27.0 -0.7 8 215-222 39-46 (55)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=6.3e-35 Score=234.13 Aligned_cols=79 Identities=63% Similarity=1.088 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCC-CCchHHHHHHHHHHhHHHHHHHHhhhhhhchhhhhcCCCCchhhhhhhhhcCCCchHHHHHHHhh
Q 018284 154 RHIVELRAAVNSHA-GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQ 232 (358)
Q Consensus 154 r~l~eLR~AL~s~~-~D~eLr~LVd~~l~HY~eyfr~Ks~aAk~DVf~llsg~W~Tp~ER~FLWiGGfRPS~llkLL~~~ 232 (358)
|+++|||+|+++|. +|++|+.||++||+||++||++|+.||++|||++|+|+|+||+|||||||||||||++|+||+++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 57899999999998 89999999999999999999999999999999999999999999999999999999999999875
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.51 E-value=2.7e-07 Score=70.71 Aligned_cols=45 Identities=44% Similarity=0.552 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 018284 70 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 114 (358)
Q Consensus 70 ~~~k~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel~ 114 (358)
.|+|-.||+.+||+||++||.|||.|++.||..-..|.....+|.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988655555444444
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.29 E-value=1.4e-06 Score=66.58 Aligned_cols=39 Identities=51% Similarity=0.769 Sum_probs=32.0
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHH
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 112 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqe 112 (358)
..|-.+|..+||+|||+||.|||.|+++||.. +..|+.+
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~---~~~L~~e 41 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEK---VEELESE 41 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHH
Confidence 35678999999999999999999999999998 4444444
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.29 E-value=1.7e-06 Score=64.36 Aligned_cols=40 Identities=48% Similarity=0.634 Sum_probs=34.0
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 114 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel~ 114 (358)
|++..||. .||+||++||-|||.|++.||.. +.+|+.+..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~---~~~L~~en~ 42 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQE---VQELEEENE 42 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 67889999 99999999999999999999998 445555444
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=97.28 E-value=0.00027 Score=69.37 Aligned_cols=32 Identities=50% Similarity=0.629 Sum_probs=28.6
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhH
Q 018284 72 QKTLRRLAQNREAARKSRLRKKAYVQQLESSR 103 (358)
Q Consensus 72 ~k~~rrlaqnreaarksrlrkkayvqqle~sr 103 (358)
-|-.=||-.||||||.+|-.||-||..||+..
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRV 321 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRV 321 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHH
Confidence 35556899999999999999999999999984
No 6
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=96.74 E-value=0.046 Score=44.28 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHHHHHHHHHHHhH
Q 018284 234 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN 313 (358)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~~Le~fl~qAD~ 313 (358)
-+||++|...|..+.......-..+-+.+......+...+....+. ...+. ..++.+...-.+...
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D-----------~~~i~---a~~~~~~~~~~~l~~ 105 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPD-----------EAAIE---ALLEEIREAQAELRQ 105 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS------------HHHHH---HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----------HHHHH---HHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999888643221 12222 333455566667778
Q ss_pred HHHHHHHHHHHhcCHHHHH
Q 018284 314 LRQQTLQQMHRILTTRQSA 332 (358)
Q Consensus 314 LR~qTL~~~~~ILTp~QAA 332 (358)
.|.+++.++..+|||.|=+
T Consensus 106 ~~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 106 ERLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHHHcCCHHHhC
Confidence 9999999999999999865
No 7
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=95.90 E-value=0.36 Score=44.12 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=58.6
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhH
Q 018284 230 VNQLEPLTEQQLVGIYNLQQSSQQAEDA--------LSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKL 301 (358)
Q Consensus 230 ~~~LepLTeqQl~~I~~Lqqst~qaEda--------Lsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl 301 (358)
...| +||++|...|..++...+.+=.+ ....|....+.+.+.+.+++..+ .|+..+
T Consensus 48 ~~~L-~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDe---------------aavral 111 (170)
T PRK12750 48 MRQL-DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDE---------------AAANDL 111 (170)
T ss_pred HhhC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCH---------------HHHHHH
Confidence 3456 79999999998888776664333 45556666667777775432221 111111
Q ss_pred -HHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 018284 302 -GTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDY 341 (358)
Q Consensus 302 -~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey 341 (358)
+.+..--.+.---|.++.++++.||||-|=+.|---..+.
T Consensus 112 ~~~~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r 152 (170)
T PRK12750 112 AKQMVEKQVERRVKMLEKRHQMLSILTPEQKAKFQELQQER 152 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1111111112223667889999999999999988765554
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=95.82 E-value=0.009 Score=49.02 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=30.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHh
Q 018284 72 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRL 104 (358)
Q Consensus 72 ~k~~rrlaqnreaarksrlrkkayvqqle~sr~ 104 (358)
=|-.||...||.||++||.||+.++..||....
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~ 61 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIE 61 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999998753
No 9
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.21 Score=45.38 Aligned_cols=107 Identities=22% Similarity=0.202 Sum_probs=69.8
Q ss_pred hhhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHH
Q 018284 215 MWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQM 294 (358)
Q Consensus 215 LWiGGfRPS~llkLL~~~LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm 294 (358)
+|.|+|-|=-.= .....| +||+.|..+|..+...-+ .++.+-+..-...+-+.+.++...+
T Consensus 39 ~~~g~~~~~~~~-~~~~~l-~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~-------------- 99 (160)
T COG3678 39 HHGGQFGPRHQG-GMFKGL-DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE-------------- 99 (160)
T ss_pred ccCCCCCccccc-cccccc-cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH--------------
Confidence 577777665320 011233 799999999988877665 4444444444455555554322211
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 018284 295 AMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAIND 340 (358)
Q Consensus 295 ~~Am~kl~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~e 340 (358)
+.|=...+.++....+.+.+|.++-.+|..||||.|.+.|=--.++
T Consensus 100 aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~ 145 (160)
T COG3678 100 AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ 145 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1222555778888899999999999999999999999776544433
No 10
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=93.87 E-value=0.058 Score=56.17 Aligned_cols=43 Identities=42% Similarity=0.572 Sum_probs=34.6
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHHH
Q 018284 73 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 115 (358)
Q Consensus 73 k~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel~~ 115 (358)
|-.||...|-+-|--||-|||-||..||+.-..-+-=+|||++
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~k 293 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQK 293 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHH
Confidence 5569999999999999999999999999985544444455544
No 11
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=92.60 E-value=0.2 Score=53.18 Aligned_cols=42 Identities=43% Similarity=0.570 Sum_probs=34.6
Q ss_pred CCHHHH---HHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 018284 70 GDQKTL---RRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 114 (358)
Q Consensus 70 ~~~k~~---rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel~ 114 (358)
.|+|++ -|...|||-|--||.|||-|++-||.. |.-|++|=+
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~r---Lq~ll~Ene 319 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEAR---LQALLSENE 319 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 477775 478999999999999999999999987 555565544
No 12
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=91.04 E-value=0.44 Score=46.64 Aligned_cols=30 Identities=43% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q 018284 73 KTLRRLAQNREAARKSRLRKKAYVQQLESS 102 (358)
Q Consensus 73 k~~rrlaqnreaarksrlrkkayvqqle~s 102 (358)
|..|.=+.|||||+|||.||---|.+||.-
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdk 235 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDK 235 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 455667889999999999998777777654
No 13
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=90.61 E-value=6.9 Score=35.73 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=62.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHHHHHHHHHH
Q 018284 231 NQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQ 310 (358)
Q Consensus 231 ~~LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~~Le~fl~q 310 (358)
..| +||++|...|-.+....+....... .+ .-+.+-+.+.+++..+ ..+...+++.. ..-..
T Consensus 53 ~~l-~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDe-----------aAvra~~~kma---~~~~e 114 (162)
T PRK12751 53 DGI-NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDE-----------AAVRAQAEKMS---QNQIE 114 (162)
T ss_pred ccC-CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCH-----------HHHHHHHHHHH---HHHHH
Confidence 344 7999999999888877766432111 11 2223344444332211 11222223322 22222
Q ss_pred HhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccc
Q 018284 311 ADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSL 351 (358)
Q Consensus 311 AD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~rLRaLssl 351 (358)
---.+.++.++++.+|||-|-+.|=--.-+....+|.++.+
T Consensus 115 ~~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~~~~~ 155 (162)
T PRK12751 115 RHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQKPAA 155 (162)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22357788899999999999999998888888888886643
No 14
>PRK10455 periplasmic protein; Reviewed
Probab=90.50 E-value=3.3 Score=37.65 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=56.7
Q ss_pred hhhhhhcC---CCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhCCCCCCCCCCCch
Q 018284 212 RCFMWIGG---FRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNV 287 (358)
Q Consensus 212 R~FLWiGG---fRPS~llkLL~~~LepLTeqQl~~I~~Lqqst~qaEdaLs-q~m~~LQqslad~la~~~~~~~g~~~~v 287 (358)
.+.+|-|| ..+..+ ...| +||++|...|..+.+..+..-...+ +..+.++ +.+.++.. +
T Consensus 35 ~~~~~~~~~~g~~~~~m----~~~L-~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~F-------D- 97 (161)
T PRK10455 35 KPMMHHKGKFGPHHDMM----FKGL-NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTF-------D- 97 (161)
T ss_pred CccccCCCCCCchhhhh----hhhC-CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCcc-------C-
Confidence 44577653 334433 3455 7999999999988777665532222 2333333 22332211 1
Q ss_pred hchhhHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHH
Q 018284 288 ANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALL 336 (358)
Q Consensus 288 ~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLl 336 (358)
...+...++++. ..-.+.--.|.++-.+|..||||-|=+.|=-
T Consensus 98 ---eaavra~~~k~~---~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~~ 140 (161)
T PRK10455 98 ---KAKAEAQITKME---AQRKARMLAHMETQNKIYNVLTPEQKKQFNA 140 (161)
T ss_pred ---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 111222223332 2222333368888999999999999998753
No 15
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=89.74 E-value=6.8 Score=36.11 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=59.1
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHH--HHHHHH
Q 018284 232 QLEPLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG--TLEGFL 308 (358)
Q Consensus 232 ~LepLTeqQl~~I~~Lqqst~qaEdaLs-q~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~--~Le~fl 308 (358)
.| +||++|...|..|.+.-+.+...++ .++++++ +.+.++.. + ...+....+|+. ..+.-|
T Consensus 48 gL-dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~F-------D----Eaavra~a~kma~~~~e~~V 111 (166)
T PRK10363 48 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENF-------D----ENAVRAQAEKMAQEQVARQV 111 (166)
T ss_pred CC-CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCC-------C----HHHHHHHHHHHHHHHHHHHH
Confidence 44 7999999999999988776644443 2444444 33332211 1 111122223332 122222
Q ss_pred HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccc
Q 018284 309 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSL 351 (358)
Q Consensus 309 ~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~rLRaLssl 351 (358)
-|.++-++|..||||-|-+.|=--.-+....+|.++.+
T Consensus 112 -----em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~~ 149 (166)
T PRK10363 112 -----EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQW 149 (166)
T ss_pred -----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36677889999999999999966555556666666543
No 16
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=86.54 E-value=4 Score=32.32 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=44.1
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHHHHHHHH
Q 018284 232 QLEPLTEQQLVGIYNLQQSSQQAEDAL---SQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 308 (358)
Q Consensus 232 ~LepLTeqQl~~I~~Lqqst~qaEdaL---sq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~~Le~fl 308 (358)
.| +||++|...|..+....+..-..+ .+.+.++.. +.. +. +... ++.+.+.+...-
T Consensus 12 ~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~~-~~~~----~~~~~~~~~~~~ 70 (100)
T PF07813_consen 12 EL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD---PSF------------DE-AAPE----ALAAMAEMMELR 70 (100)
T ss_dssp TS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH---SS--------------H-HHHH----HHH--HHCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc---ccC------------Ch-hHHH----HHHHHHHHHHHH
Confidence 44 699999999999988877766666 222222222 000 00 0011 112223334444
Q ss_pred HHHhHHHHHHHHHHHHhcCHHHHHHH
Q 018284 309 RQADNLRQQTLQQMHRILTTRQSARA 334 (358)
Q Consensus 309 ~qAD~LR~qTL~~~~~ILTp~QAA~f 334 (358)
.+.-..|..+...+..||||-|=+.|
T Consensus 71 ~~~~~~~~~~~~~~~~vLt~eQk~~~ 96 (100)
T PF07813_consen 71 AEMMEERAKAQHALYAVLTPEQKEKF 96 (100)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45555678889999999999998776
No 17
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=71.24 E-value=38 Score=33.75 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhh
Q 018284 172 LRTIVDNVTSHFDEIFRLKGI 192 (358)
Q Consensus 172 Lr~LVd~~l~HY~eyfr~Ks~ 192 (358)
|+..|+.-|.-|.+-|+.-..
T Consensus 237 L~dFVeaQmtyYAQcyq~MlD 257 (375)
T KOG3725|consen 237 LRDFVEAQMTYYAQCYQLMLD 257 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999998887543
No 18
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=63.35 E-value=18 Score=35.49 Aligned_cols=33 Identities=39% Similarity=0.464 Sum_probs=29.7
Q ss_pred CCHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q 018284 70 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESS 102 (358)
Q Consensus 70 ~~~k~~rrlaqnreaarksrlrkkayvqqle~s 102 (358)
...|++||=-.||=||..+|=||||-...+|--
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~ 98 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYE 98 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 367999999999999999999999998888765
No 19
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=59.02 E-value=36 Score=34.09 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=36.8
Q ss_pred cCCCHHHHHHHHhhHHH-HHHhhhhHHHHHHHHHhh-----------HhHHhhHHHHHHHHhh
Q 018284 68 KSGDQKTLRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRARQ 118 (358)
Q Consensus 68 ~~~~~k~~rrlaqnrea-arksrlrkkayvqqle~s-----------r~kl~qleqel~~ar~ 118 (358)
...+.|++||=+|+|.+ |-.=|-||||=-+.||.. |.++..||.|++.-||
T Consensus 221 ~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 221 YKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478888888877765 888899999998888754 2345567777766553
No 20
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=57.90 E-value=22 Score=34.75 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=20.4
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHH
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKA 94 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkka 94 (358)
|++-..|...|=+|+||||...|.
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~ 215 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQ 215 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHH
Confidence 677788999999999999987653
No 21
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=51.90 E-value=1.5e+02 Score=25.30 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHhhHhHHhhHHHHHH-HHhhcceecc-cCCCCCC-----CCCCchhhhHHHHHHHHHHHHhHH-HHHHH
Q 018284 89 RLRKKAYVQQLESSRLKLTQLEQELQ-RARQQGIFIS-SSGDQSH-----SMSGNGAAAFDVEYSRWLEEHNRH-IVELR 160 (358)
Q Consensus 89 rlrkkayvqqle~sr~kl~qleqel~-~ar~qg~~~~-~~~~~~~-----~~~~~ga~~F~~~Y~~Wleeq~r~-l~eLR 160 (358)
.-.=|+|-+.+.+. -.++.++|. -|.+.|+-+. ..-...+ .+.......||..|-..+..-++. +..+.
T Consensus 30 ~~~Vk~~A~~~~~d---h~~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~~~ 106 (139)
T PF13628_consen 30 SPEVKAFAQQMVED---HTQANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSGSAFDRAYLDAQIKAHEKALALFE 106 (139)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557999999888 446677774 4567888776 2211111 011112489999988777655544 55555
Q ss_pred HHhhcCCCCchHHHHHHHHHHhHHHHHH
Q 018284 161 AAVNSHAGDTELRTIVDNVTSHFDEIFR 188 (358)
Q Consensus 161 ~AL~s~~~D~eLr~LVd~~l~HY~eyfr 188 (358)
...-....|.+|+.++...+.-...+..
T Consensus 107 ~~~~~~~~~~~lk~~a~~~lp~l~~hl~ 134 (139)
T PF13628_consen 107 KQLAASGKDPELKAFAQETLPVLEAHLE 134 (139)
T ss_pred HHhhccCCCHHHHHHHHHHhHHHHHHHH
Confidence 5355556788999988887765555443
No 22
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=36.65 E-value=82 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 018284 302 GTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYF 342 (358)
Q Consensus 302 ~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~ 342 (358)
+....++.-..+||-+.|+++.+--|-.++.|-++.+|+.+
T Consensus 21 e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 21 EEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 34567777888899999999999999999999999999875
No 23
>PRK11702 hypothetical protein; Provisional
Probab=33.42 E-value=19 Score=31.06 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=11.0
Q ss_pred HHhhhhHHHHHHH
Q 018284 86 RKSRLRKKAYVQQ 98 (358)
Q Consensus 86 rksrlrkkayvqq 98 (358)
|+.|||||=||-.
T Consensus 5 RsRRlRKKL~v~E 17 (108)
T PRK11702 5 RSRRLRKKMHIDE 17 (108)
T ss_pred hhHHHHhhhhhHh
Confidence 6889999999854
No 24
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=30.13 E-value=74 Score=31.42 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhhhchhhhhcCCCCc
Q 018284 138 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKT 208 (358)
Q Consensus 138 a~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~l~HY~eyfr~Ks~aAk~DVf~llsg~W~T 208 (358)
-..|+.||++|+.|+.....|+..-. +.|+-=..||..|.-+|..--.+ .+ ....|.+.|..
T Consensus 75 q~~~defyEd~f~E~~~kygEiee~~---Vc~Nl~~hl~GNVYV~f~~Ee~a--e~----a~~~lnnRw~~ 136 (260)
T KOG2202|consen 75 QRHEDEFYEDVFTELEDKYGEIEELN---VCDNLGDHLVGNVYVKFRSEEDA--EA----ALEDLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh---hhcccchhhhhhhhhhcccHHHH--HH----HHHHHcCcccc
Confidence 57899999999999998888887762 22333335777776665432221 11 33446777653
No 25
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=28.75 E-value=14 Score=28.00 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=8.5
Q ss_pred hhhhhhhhcCCCch
Q 018284 210 AERCFMWIGGFRSS 223 (358)
Q Consensus 210 ~ER~FLWiGGfRPS 223 (358)
++---.|+||||--
T Consensus 34 ~~~Rs~WLgGWRea 47 (55)
T COG3130 34 LNQRSQWLGGWREA 47 (55)
T ss_pred chHHHHHHHHHHHH
Confidence 34344688888754
No 26
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=25.89 E-value=73 Score=28.20 Aligned_cols=39 Identities=28% Similarity=0.529 Sum_probs=30.5
Q ss_pred hhhhhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 018284 213 CFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQ 252 (358)
Q Consensus 213 ~FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~Lqqst~ 252 (358)
.+.|+ |.+||++.++-.....|||+..+..+.+|..+..
T Consensus 89 ~l~~~-G~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~ 127 (160)
T cd00223 89 DLRWL-GLRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPR 127 (160)
T ss_pred CcEEc-cCCHHHHhhccccccCCCCHHHHHHHHHHHhccc
Confidence 46676 5889998874455677999999999998888654
No 27
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.42 E-value=75 Score=32.23 Aligned_cols=46 Identities=39% Similarity=0.517 Sum_probs=34.2
Q ss_pred CCHHHHHH-HHhhHHHHHHh-----hhhHHHHHHHHHhhHhHHhhHHHHHHH
Q 018284 70 GDQKTLRR-LAQNREAARKS-----RLRKKAYVQQLESSRLKLTQLEQELQR 115 (358)
Q Consensus 70 ~~~k~~rr-laqnreaarks-----rlrkkayvqqle~sr~kl~qleqel~~ 115 (358)
.|-|.+|- +|..|=..... ==.|..||.|||..+-|..|||.+++-
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788876 66655433222 235679999999999999999999874
No 28
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=25.08 E-value=4.2e+02 Score=22.35 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHhHHHHHHHHh--hhhhhchhhhhcCCCCchhhhhhhhhcCCCchHHHHH
Q 018284 174 TIVDNVTSHFDEIFRLKG--IASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL 228 (358)
Q Consensus 174 ~LVd~~l~HY~eyfr~Ks--~aAk~DVf~llsg~W~Tp~ER~FLWiGGfRPS~llkL 228 (358)
.+...+-..+..+|...+ ...+. =+|.++-+|-+|+|+..+..
T Consensus 69 k~f~~i~~~lk~~F~V~sY~~I~~k------------dfd~A~~~I~~W~p~~~l~~ 113 (116)
T PF10552_consen 69 KLFSDIYRDLKRHFGVPSYKDIPRK------------DFDEALEFINNWEPSTALKM 113 (116)
T ss_pred HHHHHHHHHHHHHhCCchHHhhhHH------------HHHHHHHHHHHcCCCHHHHH
Confidence 455666666677776643 22333 37889999999999987754
No 29
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=24.75 E-value=6.9e+02 Score=24.73 Aligned_cols=175 Identities=18% Similarity=0.268 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhhhchhhhhcCCCCchhhhhhhhh
Q 018284 138 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 217 (358)
Q Consensus 138 a~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~l~HY~eyfr~Ks~aAk~DVf~llsg~W~Tp~ER~FLWi 217 (358)
+..|...|..=+++....+..|..|.+.-.....|+.+..-++ .|.+|...-..-.. .
T Consensus 163 ~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL-~~GN~lN~g~~~g~---------------------A 220 (370)
T PF02181_consen 163 ALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIIL-AIGNFLNGGTPRGN---------------------A 220 (370)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHSTCSTTCS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH-HHHHHhccCCCccc---------------------c
Confidence 5566666666666777777777777654333456777777666 34444443221112 2
Q ss_pred cCCCchH---------------HHHHHHh--------------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018284 218 GGFRSSE---------------LLKLLVN--------------QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQS 268 (358)
Q Consensus 218 GGfRPS~---------------llkLL~~--------------~LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqs 268 (358)
.||+-+. |++.|.. .|.++.......+..+... =..|..++..++..
T Consensus 221 ~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~----i~~l~~~~~~~~~~ 296 (370)
T PF02181_consen 221 KGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQD----IKELEKGLEKIKKE 296 (370)
T ss_dssp SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred ceecHHhHHHHHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHH----HHHHHHHHHHHHHH
Confidence 4444433 3333322 2222222111223333333 33455556666555
Q ss_pred HhhhhhCCCCCCCCCCCchhc-hhhHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 018284 269 LAETLANGSPSPSGTSGNVAN-YMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFS 343 (358)
Q Consensus 269 lad~la~~~~~~~g~~~~v~~-~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~ 343 (358)
+..... ... ..+.... +..-++.+-.++..|...+.+++..-.+++.-.-.-=+....-+||--+.+|..
T Consensus 297 l~~~~~----~~~-~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~ 367 (370)
T PF02181_consen 297 LEAIEK----DEE-DDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFID 367 (370)
T ss_dssp HHHCCT----TSS-TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHH
T ss_pred HHhccc----ccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 544432 000 1112222 223455666888999999999999888888777554555667778877777754
No 30
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=23.92 E-value=32 Score=27.31 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=15.1
Q ss_pred CCCCchhhhhhhhhcCCCc
Q 018284 204 GMWKTPAERCFMWIGGFRS 222 (358)
Q Consensus 204 g~W~Tp~ER~FLWiGGfRP 222 (358)
...+.-.||+|-||.+||-
T Consensus 44 ~~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 44 YKRRWVVERTFAWLKRFRR 62 (88)
T ss_pred hccceehhhhhHHHHHcCc
Confidence 3445569999999999974
No 31
>PRK10628 LigB family dioxygenase; Provisional
Probab=23.36 E-value=2.4e+02 Score=27.51 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=29.8
Q ss_pred HHhhHHHHHHHHhhcceecccCCCCCCCCC------CchhhhHHHHHHHHHHH
Q 018284 105 KLTQLEQELQRARQQGIFISSSGDQSHSMS------GNGAAAFDVEYSRWLEE 151 (358)
Q Consensus 105 kl~qleqel~~ar~qg~~~~~~~~~~~~~~------~~ga~~F~~~Y~~Wlee 151 (358)
+.-+|-+.|..-|.+|+.|-+||...|++. +.+....-.+|..|+.+
T Consensus 126 ~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~~~~~~~~~~~~wa~~F~~wl~~ 178 (246)
T PRK10628 126 WHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAESFNQFVKA 178 (246)
T ss_pred HHHHHHHHHHhhccCCEEEEecCccccchhhhcccCCCCCchHHHHHHHHHHH
Confidence 445777888888999988755555555531 12233455677777754
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.07 E-value=1.9e+02 Score=25.51 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=14.9
Q ss_pred hhhhhcCCCchHHHHHHHhhc
Q 018284 213 CFMWIGGFRSSELLKLLVNQL 233 (358)
Q Consensus 213 ~FLWiGGfRPS~llkLL~~~L 233 (358)
+++|.=||.=|.+.=+-...|
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~m 41 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRSM 41 (126)
T ss_pred eeeeecCCchhHHHHHHHHhH
Confidence 789999998887664433333
No 33
>PLN02796 D-glycerate 3-kinase
Probab=22.76 E-value=1.2e+02 Score=31.07 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHH
Q 018284 145 YSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLK 190 (358)
Q Consensus 145 Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~l~HY~eyfr~K 190 (358)
.-+|..+|++.+. +.-...++|+++...|+.+|=-|..||..-
T Consensus 278 v~~WR~qQE~~l~---~~~~~gMsde~v~~FV~~~mP~y~~y~~~l 320 (347)
T PLN02796 278 VYEWRLQAEIAMR---AKGKPGMSDEEVADFVSRYMPAYKAYLPGL 320 (347)
T ss_pred HHHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458888876554 333456889999999999999999998754
No 34
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=22.29 E-value=2.2e+02 Score=30.68 Aligned_cols=82 Identities=27% Similarity=0.366 Sum_probs=56.1
Q ss_pred HhhhhHHHHHHHHHhhHhHHhhHHHHHHHHhhcceecccCCCCCCCCCCchhhhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 018284 87 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSH 166 (358)
Q Consensus 87 ksrlrkkayvqqle~sr~kl~qleqel~~ar~qg~~~~~~~~~~~~~~~~ga~~F~~~Y~~Wleeq~r~l~eLR~AL~s~ 166 (358)
|-+=|.|-.|+||-+- |..||+- .|=.|. |..+... -++.|+-.+.|||.-++-+
T Consensus 142 kq~e~qkeLi~QLk~Q---l~dLE~~--------AYe~Ge----------g~LPq~v----iLekQk~ilDeLr~Kl~ln 196 (621)
T KOG3759|consen 142 KQNERQKELIKQLKEQ---LEDLERT--------AYENGE----------GELPQTV----ILEKQKAILDELREKLELN 196 (621)
T ss_pred hhcchHHHHHHHHHHH---HHHHHHH--------HHhcCC----------CcCchHH----HHHHHHHHHHHHHHHhhcc
Confidence 4455678888888654 5555543 233221 1222222 3567888899999998654
Q ss_pred -----CCCchHHHHHHHHHHhHHHHHHHHhhh
Q 018284 167 -----AGDTELRTIVDNVTSHFDEIFRLKGIA 193 (358)
Q Consensus 167 -----~~D~eLr~LVd~~l~HY~eyfr~Ks~a 193 (358)
++-.||+.-||..+..+-.-|++|.-+
T Consensus 197 l~i~~lsteelr~qVD~A~~q~VnP~k~KeQL 228 (621)
T KOG3759|consen 197 LDIDKLSTEELRRQVDDALKQLVNPFKEKEQL 228 (621)
T ss_pred CCcccccHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 345789999999999999999999843
No 35
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=21.95 E-value=33 Score=28.65 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=14.0
Q ss_pred hhhhhcCCCchHHHHHHHhhc
Q 018284 213 CFMWIGGFRSSELLKLLVNQL 233 (358)
Q Consensus 213 ~FLWiGGfRPS~llkLL~~~L 233 (358)
.+++.+|+||++++.|=..++
T Consensus 28 ~l~~~tG~R~~El~~l~~~~v 48 (173)
T PF00589_consen 28 LLLLYTGLRPSELLRLRWDDV 48 (173)
T ss_dssp HHHHHHT--HHHHHT-BGGGE
T ss_pred HHHHHHccchhhhhhhhhhhh
Confidence 468889999999998865544
No 36
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=6e+02 Score=26.36 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018284 244 IYNLQQSSQQAEDALSQGMDALQQS 268 (358)
Q Consensus 244 I~~Lqqst~qaEdaLsq~m~~LQqs 268 (358)
|..-+++...+++.|.+.|..+|..
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566677777777777777754
No 37
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=21.40 E-value=1.9e+02 Score=27.24 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=29.3
Q ss_pred HHHhhH-HHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 018284 77 RLAQNR-EAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 114 (358)
Q Consensus 77 rlaqnr-eaarksrlrkkayvqqle~sr~kl~qleqel~ 114 (358)
.+.+|. .+|-..=.|||-|-+||+..-..+..|||-+-
T Consensus 60 ~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 60 KVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 36777777899999999999888888888743
No 38
>PRK14563 ribosome modulation factor; Provisional
Probab=20.79 E-value=25 Score=27.03 Aligned_cols=8 Identities=50% Similarity=1.568 Sum_probs=5.5
Q ss_pred hhhcCCCc
Q 018284 215 MWIGGFRS 222 (358)
Q Consensus 215 LWiGGfRP 222 (358)
.||||||-
T Consensus 39 ~Wl~GWRe 46 (55)
T PRK14563 39 QWLGGWRE 46 (55)
T ss_pred HHHHHHHH
Confidence 67777763
Done!