Query 018284
Match_columns 358
No_of_seqs 181 out of 243
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.8 4.4E-09 1.5E-13 78.2 5.5 42 74-118 2-43 (55)
2 2dgc_A Protein (GCN4); basic d 98.4 3.8E-07 1.3E-11 69.4 5.6 36 71-106 7-42 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.1 4.6E-06 1.6E-10 62.8 5.7 36 73-108 1-36 (62)
4 2wt7_A Proto-oncogene protein 98.1 7.7E-06 2.6E-10 61.9 6.5 41 73-113 2-42 (63)
5 1t2k_D Cyclic-AMP-dependent tr 98.0 9.3E-06 3.2E-10 60.9 5.7 35 74-108 2-36 (61)
6 1gd2_E Transcription factor PA 97.6 6.1E-05 2.1E-09 58.5 4.7 37 74-113 9-45 (70)
7 2y39_A Nickel and cobalt resis 97.4 0.0039 1.3E-07 52.9 13.5 101 223-341 9-112 (118)
8 1ci6_A Transcription factor AT 96.6 0.0019 6.5E-08 48.8 4.4 40 74-113 3-42 (63)
9 1gu4_A CAAT/enhancer binding p 95.4 0.05 1.7E-06 42.9 7.2 47 71-117 13-70 (78)
10 3itf_A Periplasmic adaptor pro 94.1 0.3 1E-05 42.4 9.7 98 232-349 43-142 (145)
11 3a5t_A Transcription factor MA 93.6 0.058 2E-06 45.0 4.1 31 73-103 37-67 (107)
12 1hjb_A Ccaat/enhancer binding 91.0 0.67 2.3E-05 37.1 7.0 47 71-117 13-70 (87)
13 3oeo_A Spheroplast protein Y; 87.1 0.36 1.2E-05 41.3 3.1 99 229-345 28-126 (138)
14 3o39_A Periplasmic protein rel 83.2 1.6 5.6E-05 36.0 5.2 83 235-335 17-100 (108)
15 3lay_A Zinc resistance-associa 83.2 14 0.00049 32.7 11.7 42 234-275 66-107 (175)
16 2wt7_B Transcription factor MA 76.8 5.8 0.0002 32.0 6.2 34 71-104 25-58 (90)
17 1skn_P DNA-binding domain of S 76.3 1.2 4.1E-05 36.1 2.0 29 72-100 61-89 (92)
18 2ksd_A Aerobic respiration con 63.1 0.54 1.9E-05 39.6 -2.7 30 95-124 76-105 (115)
19 2ke4_A CDC42-interacting prote 55.2 81 0.0028 25.4 9.2 43 233-276 8-55 (98)
20 3he4_B Synzip5; heterodimeric 51.9 17 0.00058 25.2 3.7 25 93-117 9-33 (46)
21 2kz5_A Transcription factor NF 44.5 4.9 0.00017 32.5 0.1 21 73-93 66-86 (91)
22 2c9l_Y EB1, zebra, BZLF1 trans 39.4 33 0.0011 25.4 3.9 23 78-103 6-28 (63)
23 2er8_A Regulatory protein Leu3 37.4 18 0.00061 26.4 2.3 23 92-117 47-69 (72)
24 4abm_A Charged multivesicular 37.0 50 0.0017 25.6 4.9 36 79-114 41-76 (79)
25 1zme_C Proline utilization tra 34.3 29 0.00099 24.9 3.0 23 92-117 42-64 (70)
26 1k1f_A Breakpoint cluster regi 32.1 34 0.0012 26.2 3.0 31 93-123 28-59 (72)
27 1ux5_A BNI1 protein; structura 31.0 3.7E+02 0.013 25.9 13.1 90 256-346 301-392 (411)
28 4i0x_B ESAT-6-like protein MAB 28.9 1.9E+02 0.0065 22.2 7.2 50 94-157 25-74 (103)
29 3plt_A Sphingolipid long chain 26.7 82 0.0028 29.3 5.3 43 79-121 99-148 (234)
30 1hwt_C Protein (heme activator 26.7 27 0.00094 25.8 1.7 27 87-116 51-77 (81)
31 1s16_A Topoisomerase IV subuni 25.5 18 0.00062 35.6 0.7 15 79-93 376-390 (390)
32 3obv_E Protein diaphanous homo 23.0 5.6E+02 0.019 25.4 12.4 43 138-180 170-212 (457)
33 1js9_A Coat protein, capsid pr 22.2 19 0.00064 32.1 0.0 15 79-93 12-26 (189)
34 2j1d_G DAAM1, disheveled-assoc 20.7 6.3E+02 0.021 25.0 13.3 177 138-345 181-388 (483)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.82 E-value=4.4e-09 Score=78.16 Aligned_cols=42 Identities=43% Similarity=0.553 Sum_probs=36.6
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHHHHhh
Q 018284 74 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 118 (358)
Q Consensus 74 ~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel~~ar~ 118 (358)
-.+|+..|||+|+.||.|||+||..||.. +.+|+.|-..-+.
T Consensus 2 r~rR~~~NResA~rSR~RKk~~~~~LE~~---v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 2 REVRLMKNREAARESRRKKKEYVKSLENR---VAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 47999999999999999999999999998 6788887665553
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.39 E-value=3.8e-07 Score=69.40 Aligned_cols=36 Identities=39% Similarity=0.424 Sum_probs=28.0
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHH
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 106 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkkayvqqle~sr~kl 106 (358)
+|+..+|-++||||||+||.||++|+..||..-..|
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L 42 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEEL 42 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778899999999999999999999875443
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.09 E-value=4.6e-06 Score=62.83 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=30.7
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhh
Q 018284 73 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 108 (358)
Q Consensus 73 k~~rrlaqnreaarksrlrkkayvqqle~sr~kl~q 108 (358)
|..||...||+||+|||.|||.|++.||..--.|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~ 36 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKA 36 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999988554443
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.06 E-value=7.7e-06 Score=61.90 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=33.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHH
Q 018284 73 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 113 (358)
Q Consensus 73 k~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel 113 (358)
|-.+|+-.||+||+|||.|||.|++.||.-.-.|..-..+|
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999865554433333
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=97.99 E-value=9.3e-06 Score=60.90 Aligned_cols=35 Identities=37% Similarity=0.509 Sum_probs=30.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhh
Q 018284 74 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 108 (358)
Q Consensus 74 ~~rrlaqnreaarksrlrkkayvqqle~sr~kl~q 108 (358)
=.+|+..||+||.|||.|||.|++.||..--.|..
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~ 36 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSS 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999988554443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.60 E-value=6.1e-05 Score=58.53 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=31.4
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHH
Q 018284 74 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 113 (358)
Q Consensus 74 ~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel 113 (358)
..+|-||||+|+|-.|-||++||..||.- +.+||.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~---v~~le~~~ 45 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQ---VVTLKELH 45 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 46889999999999999999999999987 55555543
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.38 E-value=0.0039 Score=52.88 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=77.4
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHH
Q 018284 223 SELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG 302 (358)
Q Consensus 223 S~llkLL~~~LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~ 302 (358)
+.+=.+|...| +||++|...|..+...-.....+|.++|...-.-|++.+.... .|..++..|+.
T Consensus 9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~-----------~~~p~V~aaid--- 73 (118)
T 2y39_A 9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP-----------AWSPEVEAATQ--- 73 (118)
T ss_dssp CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------SCCHHHHHHHH---
T ss_pred CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------ccCHHHHHHHH---
Confidence 34445667777 7999999999999999999999999999999999999986321 13445555554
Q ss_pred HHHHHHHHHhHHHHHH---HHHHHHhcCHHHHHHHHHHHHHH
Q 018284 303 TLEGFLRQADNLRQQT---LQQMHRILTTRQSARALLAINDY 341 (358)
Q Consensus 303 ~Le~fl~qAD~LR~qT---L~~~~~ILTp~QAA~fLlA~~ey 341 (358)
.|-...-.|+..| +-.|..||||-|+.+|=-.+.+-
T Consensus 74 ---~~h~~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 74 ---EVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333555688888 56689999999999997666543
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.63 E-value=0.0019 Score=48.79 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHH
Q 018284 74 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 113 (358)
Q Consensus 74 ~~rrlaqnreaarksrlrkkayvqqle~sr~kl~qleqel 113 (358)
-.|+.-+||.||+++|.|||.+++.||..--.|.+-..+|
T Consensus 3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 3 KLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEAL 42 (63)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999998755554444443
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=95.36 E-value=0.05 Score=42.87 Aligned_cols=47 Identities=32% Similarity=0.308 Sum_probs=37.1
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh---------hH--hHHhhHHHHHHHHh
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRAR 117 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkkayvqqle~---------sr--~kl~qleqel~~ar 117 (358)
|++-..|--.|.+||+|||-.+|.-.+.++. .. .++.+|+.|+..-|
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999999998888843 33 45667777777666
No 10
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=94.09 E-value=0.3 Score=42.43 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=60.7
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHH-HhHHHHHHHHH
Q 018284 232 QLEPLTEQQLVGIYNLQQSSQQAEDALSQ-GMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAM-GKLGTLEGFLR 309 (358)
Q Consensus 232 ~LepLTeqQl~~I~~Lqqst~qaEdaLsq-~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am-~kl~~Le~fl~ 309 (358)
.| +||++|...|..|.+..+.+...+.. .++ .+-+.+.++.. + +.|+ ..++.+...-.
T Consensus 43 ~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~f-------D--------eaa~ral~~~~~~~~~ 102 (145)
T 3itf_A 43 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENF-------D--------ENAVRAQAEKMANEQI 102 (145)
T ss_dssp TC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSC-------C--------HHHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCC-------C--------HHHHHHHHHHHHHHHH
Confidence 44 69999999999999887776554431 222 23333332211 1 1122 22233334444
Q ss_pred HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Q 018284 310 QADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALS 349 (358)
Q Consensus 310 qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~rLRaLs 349 (358)
+.--.|.++-.+|..||||-|-+.|---..+-...++.++
T Consensus 103 e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~ 142 (145)
T 3itf_A 103 ARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT 142 (145)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445788888999999999999998876666555555544
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=93.62 E-value=0.058 Score=44.96 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhH
Q 018284 73 KTLRRLAQNREAARKSRLRKKAYVQQLESSR 103 (358)
Q Consensus 73 k~~rrlaqnreaarksrlrkkayvqqle~sr 103 (358)
|-.||--.||++|+.||.||.+.+..||.-.
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~ 67 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQK 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999763
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.99 E-value=0.67 Score=37.15 Aligned_cols=47 Identities=30% Similarity=0.285 Sum_probs=34.6
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh-----------HhHHhhHHHHHHHHh
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRAR 117 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkkayvqqle~s-----------r~kl~qleqel~~ar 117 (358)
|++-..|--.|.+||||||-.+|.=.+.++.. +.++.+|+.|++.-|
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999998877776433 234555666666555
No 13
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=87.14 E-value=0.36 Score=41.25 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=54.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHHHHHHHH
Q 018284 229 LVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 308 (358)
Q Consensus 229 L~~~LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~~Le~fl 308 (358)
+...| +||++|...|..|.+..+..-.. .+....+.+.+.+.++.. + ...+. ..++.+...-
T Consensus 28 m~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~f-------D----eaav~---al~~~~~~~~ 89 (138)
T 3oeo_A 28 MFKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTF-------D----KVKAE---AQIAKMEEQR 89 (138)
T ss_dssp --CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSC-------C----HHHHH---HHHGGGSHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCC-------C----HHHHH---HHHHHHHHHH
Confidence 35666 69999999999998776554221 112222344444432211 1 11111 2223333344
Q ss_pred HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 018284 309 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRL 345 (358)
Q Consensus 309 ~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~rL 345 (358)
.+.--.|.++..+|..||||-|-+.|---+.+-..++
T Consensus 90 ~e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~ 126 (138)
T 3oeo_A 90 KANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTER 126 (138)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 4445578889999999999999999876655544443
No 14
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=83.24 E-value=1.6 Score=36.01 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhCCCCCCCCCCCchhchhhHHHHHHHhHHHHHHHHHHHhH
Q 018284 235 PLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN 313 (358)
Q Consensus 235 pLTeqQl~~I~~Lqqst~qaEdaLs-q~m~~LQqslad~la~~~~~~~g~~~~v~~~~~qm~~Am~kl~~Le~fl~qAD~ 313 (358)
+||++|...|..|....+.+-.... ...+ .+-+.+.++.... + ...... +++ ...-.+.--
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDE-------a-aar~l~---~~~---~~~~~e~~v 78 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDK-------A-KAEAQI---AKM---EEQRKANML 78 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCH-------H-HHHHHH---HHT---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCH-------H-HHHHHH---HHH---HHHHHHHHH
Confidence 6999999999998887665532222 1122 2334443221110 0 111111 211 111222223
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 018284 314 LRQQTLQQMHRILTTRQSARAL 335 (358)
Q Consensus 314 LR~qTL~~~~~ILTp~QAA~fL 335 (358)
.|.++=++|..||||-|-+.|-
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 5677788999999999998864
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=83.19 E-value=14 Score=32.74 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 018284 234 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLAN 275 (358)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~ 275 (358)
-+||++|..+|..|+++-+..-.+|.+.|...++.+-+.+..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999999999999999999888877653
No 16
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.78 E-value=5.8 Score=31.97 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=29.7
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHh
Q 018284 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRL 104 (358)
Q Consensus 71 ~~k~~rrlaqnreaarksrlrkkayvqqle~sr~ 104 (358)
.=|-.||=-.||-+|..||-||-.-+..||.-..
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~ 58 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKT 58 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999998743
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=76.26 E-value=1.2 Score=36.10 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 018284 72 QKTLRRLAQNREAARKSRLRKKAYVQQLE 100 (358)
Q Consensus 72 ~k~~rrlaqnreaarksrlrkkayvqqle 100 (358)
-+-.||=..||.||+++|.||..-+..||
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999999999987665544
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=63.10 E-value=0.54 Score=39.61 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=12.9
Q ss_pred HHHHHHhhHhHHhhHHHHHHHHhhcceecc
Q 018284 95 YVQQLESSRLKLTQLEQELQRARQQGIFIS 124 (358)
Q Consensus 95 yvqqle~sr~kl~qleqel~~ar~qg~~~~ 124 (358)
-|+|||.||.+|+++=.+|++.|+|..+..
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999988764
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=55.18 E-value=81 Score=25.38 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=33.8
Q ss_pred cCCChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q 018284 233 LEPLTEQQL-----VGIYNLQQSSQQAEDALSQGMDALQQSLAETLANG 276 (358)
Q Consensus 233 LepLTeqQl-----~~I~~Lqqst~qaEdaLsq~m~~LQqslad~la~~ 276 (358)
..+|.++|. .+|+.|+..+.++.++ .+||.+++....+.+..|
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~G 55 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMG 55 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGC
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccC
Confidence 346777773 4778888888888887 789999999988888754
No 20
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=51.92 E-value=17 Score=25.21 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=20.5
Q ss_pred HHHHHHHHhhHhHHhhHHHHHHHHh
Q 018284 93 KAYVQQLESSRLKLTQLEQELQRAR 117 (358)
Q Consensus 93 kayvqqle~sr~kl~qleqel~~ar 117 (358)
|-|||.||..-..|..|..-|.-|+
T Consensus 9 knyiqeleernaelknlkehlkfak 33 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAK 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 6899999999888888877776555
No 21
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=44.55 E-value=4.9 Score=32.47 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHhhhhHH
Q 018284 73 KTLRRLAQNREAARKSRLRKK 93 (358)
Q Consensus 73 k~~rrlaqnreaarksrlrkk 93 (358)
+-.||=..||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 345888999999999999984
No 22
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=39.43 E-value=33 Score=25.38 Aligned_cols=23 Identities=52% Similarity=0.495 Sum_probs=16.4
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHhhH
Q 018284 78 LAQNREAARKSRLRKKAYVQQLESSR 103 (358)
Q Consensus 78 laqnreaarksrlrkkayvqqle~sr 103 (358)
--.||-|+||||-+=| ++||--|
T Consensus 6 ryknr~asrk~rakfk---n~lqh~r 28 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFK---QLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3479999999998754 5555444
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.44 E-value=18 Score=26.36 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhHhHHhhHHHHHHHHh
Q 018284 92 KKAYVQQLESSRLKLTQLEQELQRAR 117 (358)
Q Consensus 92 kkayvqqle~sr~kl~qleqel~~ar 117 (358)
++.||++||.. +.+||..|+..+
T Consensus 47 ~~~~~~~Le~r---i~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKR---FKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHCC-
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHh
Confidence 45899999985 888998887544
No 24
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=37.04 E-value=50 Score=25.57 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.4
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 018284 79 AQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 114 (358)
Q Consensus 79 aqnreaarksrlrkkayvqqle~sr~kl~qleqel~ 114 (358)
.-|+.+|-..=-|||.|=+||+.--.-+.+||+-+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346666766767888999999988888999998754
No 25
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.31 E-value=29 Score=24.91 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHhHHhhHHHHHHHHh
Q 018284 92 KKAYVQQLESSRLKLTQLEQELQRAR 117 (358)
Q Consensus 92 kkayvqqle~sr~kl~qleqel~~ar 117 (358)
++.||++||.. +.+||+.|...+
T Consensus 42 ~~~~~~~L~~r---i~~Le~~l~~l~ 64 (70)
T 1zme_C 42 STKYLQQLQKD---LNDKTEENNRLK 64 (70)
T ss_dssp EHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45799999876 778888887655
No 26
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=32.08 E-value=34 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=23.3
Q ss_pred HHHH-HHHHhhHhHHhhHHHHHHHHhhcceec
Q 018284 93 KAYV-QQLESSRLKLTQLEQELQRARQQGIFI 123 (358)
Q Consensus 93 kayv-qqle~sr~kl~qleqel~~ar~qg~~~ 123 (358)
--|| |.||.++..+..||||+.+-|=-=||+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYL 59 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYL 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3454 579999999999999998777444444
No 27
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=31.01 E-value=3.7e+02 Score=25.93 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCCCCCCCCchhchh-hHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcC-HHHHHH
Q 018284 256 DALSQGMDALQQSLAETLANGSPSPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILT-TRQSAR 333 (358)
Q Consensus 256 daLsq~m~~LQqslad~la~~~~~~~g~~~~v~~~~-~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~~~~ILT-p~QAA~ 333 (358)
.+|..++..++..+.....+... ..+....+...| .-+..|-.++..|...+..+...-..++.-...=-+ ..+--+
T Consensus 301 ~~L~~~l~~v~~~l~~~~~s~~~-~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~~ 379 (411)
T 1ux5_A 301 KDFSQSIVNVERSVEIGNLSDSS-KFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKIS 379 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCTT-SSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccc-ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 45677777787766432111100 000111222112 224556677888888888777766666555433323 345566
Q ss_pred HHHHHHHHHHHHH
Q 018284 334 ALLAINDYFSRLR 346 (358)
Q Consensus 334 fLlA~~ey~~rLR 346 (358)
|+--+.+|...++
T Consensus 380 fF~~~~~F~~~f~ 392 (411)
T 1ux5_A 380 FFKKFADFINEYK 392 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666654443
No 28
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.92 E-value=1.9e+02 Score=22.23 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=36.3
Q ss_pred HHHHHHHhhHhHHhhHHHHHHHHhhcceecccCCCCCCCCCCchhhhHHHHHHHHHHHHhHHHH
Q 018284 94 AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIV 157 (358)
Q Consensus 94 ayvqqle~sr~kl~qleqel~~ar~qg~~~~~~~~~~~~~~~~ga~~F~~~Y~~Wleeq~r~l~ 157 (358)
.+..+|++. |.+|+..++.-...|..-| ..+..|...+.+|-....+...
T Consensus 25 ~~~~~i~~~---l~~L~~~v~~L~~~g~W~G-----------~A~~ay~~~~~~W~~~a~~l~~ 74 (103)
T 4i0x_B 25 GFKEFVTEN---LDQLESRAQKLVQSGQWAG-----------AAAAAYSQAHKEWMDAARELVE 74 (103)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHTSSCH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHhcCCCeec-----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776 8888888888776653333 3579999999999876655443
No 29
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=26.69 E-value=82 Score=29.31 Aligned_cols=43 Identities=35% Similarity=0.451 Sum_probs=27.9
Q ss_pred HhhHHHH-HHhhhhHHHHHHHHHh------hHhHHhhHHHHHHHHhhcce
Q 018284 79 AQNREAA-RKSRLRKKAYVQQLES------SRLKLTQLEQELQRARQQGI 121 (358)
Q Consensus 79 aqnreaa-rksrlrkkayvqqle~------sr~kl~qleqel~~ar~qg~ 121 (358)
..|||.. .-+|-||+.-..++.- .-.||.-|||||.||-+..+
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~l 148 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESL 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhh
Confidence 3577765 4556665555444432 12578999999999986653
No 30
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.65 E-value=27 Score=25.79 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=18.5
Q ss_pred HhhhhHHHHHHHHHhhHhHHhhHHHHHHHH
Q 018284 87 KSRLRKKAYVQQLESSRLKLTQLEQELQRA 116 (358)
Q Consensus 87 ksrlrkkayvqqle~sr~kl~qleqel~~a 116 (358)
+.++.++.||+.||.. |.+||..|...
T Consensus 51 ~~~~~~~~~~~~L~~r---i~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRER---VKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHTTC---
T ss_pred ccccchHHHHHHHHHH---HHHHHHHHHHh
Confidence 3455677899999876 78888877643
No 31
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=25.51 E-value=18 Score=35.55 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=7.0
Q ss_pred HhhHHHHHHhhhhHH
Q 018284 79 AQNREAARKSRLRKK 93 (358)
Q Consensus 79 aqnreaarksrlrkk 93 (358)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 578999999998876
No 32
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=22.99 E-value=5.6e+02 Score=25.38 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 018284 138 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVT 180 (358)
Q Consensus 138 a~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~l 180 (358)
+..|...|..=+.+....+.-|..|...-.+...|+.+++-++
T Consensus 170 ~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL 212 (457)
T 3obv_E 170 AILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL 212 (457)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5667777776666677777777777654434456777776665
No 33
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=22.15 E-value=19 Score=32.10 Aligned_cols=15 Identities=47% Similarity=0.652 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhhhHH
Q 018284 79 AQNREAARKSRLRKK 93 (358)
Q Consensus 79 aqnreaarksrlrkk 93 (358)
||.|.|||+-|++||
T Consensus 12 aQRRaaaR~nr~~~~ 26 (189)
T 1js9_A 12 AQRRAAARRNRWTAR 26 (189)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhhhhcc
Confidence 788999999999888
No 34
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=20.66 E-value=6.3e+02 Score=25.05 Aligned_cols=177 Identities=15% Similarity=0.278 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhhhchhhhhcCCCCchhhhhhhhh
Q 018284 138 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 217 (358)
Q Consensus 138 a~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~l~HY~eyfr~Ks~aAk~DVf~llsg~W~Tp~ER~FLWi 217 (358)
+..|...|..=+.+....+.-|..|...-.....|+.+++-|+. +.+|...- .+.+ .
T Consensus 181 ~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~-~GN~mN~g---~rg~-------------------A 237 (483)
T 2j1d_G 181 SLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLA-FGNYMNKG---QRGN-------------------A 237 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHSCS---SSCC-------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HhhhhccC---CCCC-------------------c
Confidence 56677777777777777777777776443333567777776662 33333211 0000 1
Q ss_pred cCCCchH----------------HHHHHH-------hh-------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018284 218 GGFRSSE----------------LLKLLV-------NQ-------LEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQ 267 (358)
Q Consensus 218 GGfRPS~----------------llkLL~-------~~-------LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQq 267 (358)
-||+-+. |+|.|. |. |.++.......+.+|...+. .|..++..++.
T Consensus 238 ~GFkL~sL~KL~d~Ks~~d~k~TLLhylv~~v~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~----~L~~~l~~v~~ 313 (483)
T 2j1d_G 238 YGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEIS----TLRSGLKAVET 313 (483)
T ss_dssp SCCCGGGGGGGGGSBCSSCTTCBHHHHHHHHHHHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHH----HHHHHHHHHHH
T ss_pred eeeehHHHHhhhhcccCCCCCccHHHHHHHHHHHhCchhhchHHHHhhHHHHhcCCHHHHHHHHH----HHHHHHHHHHH
Confidence 2444333 333332 22 22222222233444444443 45566666666
Q ss_pred HHhhhhhCCCCCCCCCCCchhchh-hHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 018284 268 SLAETLANGSPSPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRL 345 (358)
Q Consensus 268 slad~la~~~~~~~g~~~~v~~~~-~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~rL 345 (358)
.+...-... .. ..+.....| .-+..|-.++..|+..+..+...-..++.-.-.=-+..+.-+|+--+.+|...+
T Consensus 314 ~l~~~~~~~-~~---~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f 388 (483)
T 2j1d_G 314 ELEYQKSQP-PQ---PGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAV 388 (483)
T ss_dssp HHHHHHTSC-CC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccC-CC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 554432211 11 111222222 235567788888999888888877777765543222234456776666665444
Done!