Query 018284
Match_columns 358
No_of_seqs 181 out of 243
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 12:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018284.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018284hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 51.4 4.3 0.00031 29.8 2.6 19 75-93 50-68 (74)
2 d1v9da_ a.207.1.1 (A:) Diaphan 42.2 1E+02 0.0075 26.6 11.4 178 138-346 94-301 (332)
3 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 40.5 9.9 0.00072 27.1 3.0 28 96-123 32-59 (67)
4 d2c35a1 a.60.8.2 (A:14-142) RN 27.6 26 0.0019 27.2 4.0 78 168-247 40-120 (129)
5 d1uuja_ a.221.1.1 (A:) Lissenc 24.1 26 0.0019 25.5 3.0 19 325-343 1-19 (76)
6 d2pw6a1 c.56.6.1 (A:14-271) Un 21.1 24 0.0017 30.6 2.7 46 106-151 139-190 (258)
7 d1zbdb_ g.50.1.1 (B:) Effector 17.9 72 0.0052 24.1 4.7 40 234-273 1-40 (124)
8 d1b33n_ d.30.1.1 (N:) Allophyc 17.0 33 0.0024 24.1 2.1 14 144-157 32-45 (67)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 16.4 1.5E+02 0.011 22.8 6.3 33 234-266 83-115 (129)
10 d1urfa_ a.2.6.1 (A:) Protein k 14.9 49 0.0035 24.0 2.8 28 94-121 46-74 (81)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=51.35 E-value=4.3 Score=29.81 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.3
Q ss_pred HHHHHhhHHHHHHhhhhHH
Q 018284 75 LRRLAQNREAARKSRLRKK 93 (358)
Q Consensus 75 ~rrlaqnreaarksrlrkk 93 (358)
.||=..|+-||+.+|.||-
T Consensus 50 IRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 50 IRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhhh
Confidence 4888999999999999985
No 2
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.19 E-value=1e+02 Score=26.61 Aligned_cols=178 Identities=14% Similarity=0.151 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhhhchhhhhcCCCCchhhhhhhhh
Q 018284 138 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 217 (358)
Q Consensus 138 a~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~l~HY~eyfr~Ks~aAk~DVf~llsg~W~Tp~ER~FLWi 217 (358)
+..|...|..=+++....+..+..|...-.....|+.+..-++ .+.+|...-+.-.. .
T Consensus 94 ~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL-~~GN~mN~g~~~g~---------------------A 151 (332)
T d1v9da_ 94 AILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL-LVGNYMNAGSRNAG---------------------A 151 (332)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHH-Hhcchhcccccccc---------------------c
Confidence 5667777777677777777777777654434455666655554 23333221111011 2
Q ss_pred cCCCchHHHHHH---------------Hh--------------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018284 218 GGFRSSELLKLL---------------VN--------------QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQS 268 (358)
Q Consensus 218 GGfRPS~llkLL---------------~~--------------~LepLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqs 268 (358)
-||+-+.|.+|. .. .|.++.......+.++...+. .|..++..++..
T Consensus 152 ~GFkL~sL~kL~d~Ks~d~~~tLL~~iv~~~~~~~p~l~~~~~eL~~v~~ask~~~~~l~~~~~----~l~~~l~~~~~~ 227 (332)
T d1v9da_ 152 FGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLD----QMKKQIADVERD 227 (332)
T ss_dssp -----CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cccCHHHHHhHhhccCCCCCccHHHHHHHHHHHhCchhccchhhhhhHHHHhcCCHHHHHHHHH----HHHHHHHHHHHH
Confidence 455444444433 21 222232333334444444333 355556666655
Q ss_pred HhhhhhCCCCCCCCCCCchhchh-hHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 018284 269 LAETLANGSPSPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 346 (358)
Q Consensus 269 lad~la~~~~~~~g~~~~v~~~~-~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~~~~ILTp~QAA~fLlA~~ey~~rLR 346 (358)
+...... . . ....+...| .-+..|..++..|...+.+++..-.++..-..+--+..+.-+|+--+..|...+.
T Consensus 228 l~~~~~~--~-~--~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~ 301 (332)
T d1v9da_ 228 VQNFPAA--T-D--EKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301 (332)
T ss_dssp HHTCCCC--S-S--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcccc--c-c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5432211 0 0 111222222 2356677899999999999998877777766544444566788888877765543
No 3
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.47 E-value=9.9 Score=27.14 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred HHHHHhhHhHHhhHHHHHHHHhhcceec
Q 018284 96 VQQLESSRLKLTQLEQELQRARQQGIFI 123 (358)
Q Consensus 96 vqqle~sr~kl~qleqel~~ar~qg~~~ 123 (358)
-|.||.++..+..|||||.+-|=.-+|+
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iYL 59 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIYL 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998766444444
No 4
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.64 E-value=26 Score=27.16 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHhhhhhhchhhhhcCCCCchhhhhhhhhcCCCchHH--HHHHHhhcC-CChHHHHHHH
Q 018284 168 GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSEL--LKLLVNQLE-PLTEQQLVGI 244 (358)
Q Consensus 168 ~D~eLr~LVd~~l~HY~eyfr~Ks~aAk~DVf~llsg~W~Tp~ER~FLWiGGfRPS~l--lkLL~~~Le-pLTeqQl~~I 244 (358)
.+.+|..+..+.+.|-...-+.+..-+...|..+++..=.+++|.+ =|+..+|+.. ++.|++.++ .+|++++..|
T Consensus 40 ~~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~i 117 (129)
T d2c35a1 40 DEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQI 117 (129)
T ss_dssp SSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 3567888888888765443334556677778888887778898887 4588888864 556778885 6899998877
Q ss_pred HHH
Q 018284 245 YNL 247 (358)
Q Consensus 245 ~~L 247 (358)
=+.
T Consensus 118 Ld~ 120 (129)
T d2c35a1 118 LDD 120 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.07 E-value=26 Score=25.46 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.1
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 018284 325 ILTTRQSARALLAINDYFS 343 (358)
Q Consensus 325 ILTp~QAA~fLlA~~ey~~ 343 (358)
|||++|+.+-=-||.+|+.
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999975
No 6
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}
Probab=21.12 E-value=24 Score=30.64 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHhhcceecccCCCCCCCCC------CchhhhHHHHHHHHHHH
Q 018284 106 LTQLEQELQRARQQGIFISSSGDQSHSMS------GNGAAAFDVEYSRWLEE 151 (358)
Q Consensus 106 l~qleqel~~ar~qg~~~~~~~~~~~~~~------~~ga~~F~~~Y~~Wlee 151 (358)
.-+|=+.|..+|.+|+.|.+||+..|.+. ..+......+|..|+.+
T Consensus 139 ~~~lG~aL~~lr~e~vliIgSG~lsHnL~~~~~~~~~~~~~~a~~Fd~w~~~ 190 (258)
T d2pw6a1 139 HFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKA 190 (258)
T ss_dssp HHHHHHHHGGGGGGTEEEEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCEEEEEecccccccccccccCCCCCCcHHHHHHHHHHH
Confidence 44566777788889988866777777642 12233455677788874
No 7
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.90 E-value=72 Score=24.07 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018284 234 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETL 273 (358)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQqslad~l 273 (358)
++||+++...|.+.-++-...+..-.+++.++.+.+.+.-
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~ 40 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMR 40 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789998888877777777777777788888888776643
No 8
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.97 E-value=33 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHH
Q 018284 144 EYSRWLEEHNRHIV 157 (358)
Q Consensus 144 ~Y~~Wleeq~r~l~ 157 (358)
-|+.|+.||++.+.
T Consensus 32 py~nWf~EQQrI~K 45 (67)
T d1b33n_ 32 PYENWFREQQRIQK 45 (67)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 38899999998764
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.35 E-value=1.5e+02 Score=22.81 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018284 234 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQ 266 (358)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsq~m~~LQ 266 (358)
+.-.+.|+.+|..|+.+.+.+|..+.+.+.+..
T Consensus 83 ~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 83 DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999999998877655543
No 10
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.93 E-value=49 Score=24.01 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHH-HHHhhHhHHhhHHHHHHHHhhcce
Q 018284 94 AYVQ-QLESSRLKLTQLEQELQRARQQGI 121 (358)
Q Consensus 94 ayvq-qle~sr~kl~qleqel~~ar~qg~ 121 (358)
+.+| .|..|..||..|.++|++.+|.+.
T Consensus 46 ~eaq~~l~eS~~Ki~lLr~~L~~~~q~~~ 74 (81)
T d1urfa_ 46 LTAQQMLQDSKTKIDIIRMQLRRALQADQ 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444 578899999999999999998753
Done!