Query 018286
Match_columns 358
No_of_seqs 231 out of 1080
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2605 OTU (ovarian tumor)-li 100.0 7.1E-39 1.5E-43 317.9 11.3 350 5-358 1-364 (371)
2 PF02338 OTU: OTU-like cystein 99.9 2.1E-25 4.6E-30 185.7 10.3 107 223-335 1-121 (121)
3 KOG2606 OTU (ovarian tumor)-li 99.9 2.4E-23 5.2E-28 200.1 12.0 139 201-342 143-299 (302)
4 KOG3288 OTU-like cysteine prot 99.6 5E-15 1.1E-19 140.8 7.7 123 217-342 110-234 (307)
5 PF10275 Peptidase_C65: Peptid 99.5 4E-13 8.7E-18 126.3 13.7 94 246-340 141-244 (244)
6 KOG3991 Uncharacterized conser 99.4 1.1E-12 2.4E-17 123.2 9.3 94 245-341 157-256 (256)
7 COG5539 Predicted cysteine pro 98.5 3.2E-08 6.9E-13 96.1 0.9 120 215-338 169-304 (306)
8 COG5539 Predicted cysteine pro 98.2 3.7E-07 7.9E-12 88.9 1.5 110 224-339 119-230 (306)
9 PF05415 Peptidase_C36: Beet n 71.8 9.4 0.0002 32.2 5.1 64 222-303 3-68 (104)
10 PF05412 Peptidase_C33: Equine 62.5 5.1 0.00011 34.5 1.8 83 222-342 4-87 (108)
11 PRK09784 hypothetical protein; 56.5 6.2 0.00013 39.0 1.6 26 212-237 195-220 (417)
12 TIGR01078 arcA arginine deimin 34.2 55 0.0012 33.8 4.4 54 193-258 34-87 (405)
13 PF05381 Peptidase_C21: Tymovi 31.0 3.4E+02 0.0074 23.4 7.9 90 225-337 2-94 (104)
14 PRK01388 arginine deiminase; P 25.5 1.2E+02 0.0027 31.4 5.2 31 193-223 41-71 (406)
15 KOG2605 OTU (ovarian tumor)-li 21.2 17 0.00037 37.4 -1.9 92 212-303 50-141 (371)
16 smart00718 DM4_12 DM4/DM12 fam 20.8 1.9E+02 0.0041 23.9 4.5 72 204-287 9-81 (95)
No 1
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-39 Score=317.88 Aligned_cols=350 Identities=28% Similarity=0.366 Sum_probs=271.9
Q ss_pred ccccCCCCcceecccccCCCCCCCC---CCCCcceeeecC-CCCccccccccccccccccccchHHHHHHHHHHHHHHHH
Q 018286 5 ITYEQDPDVLRWGLHQLLDICTLSN---SGSQNVITRYDR-DSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAA 80 (358)
Q Consensus 5 ~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ia~~~q~e~~~~~~ 80 (358)
+.++++|.+++|.|+++=+..++.. .|.++.+.|.-. ++...++++++|+..+...|.+|++||+.+|++++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~ 80 (371)
T KOG2605|consen 1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGTDGYNNKRYGEVDRDFMIARGHQDEVLTVED 80 (371)
T ss_pred CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccceeccccCccccchhhhhhhhcccccccccccH
Confidence 3578999999999997666554332 566777777644 444568899999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCcccccC-CCCCCCCCCCCcccCCcccCCCCCCCcccccc----cccccccccCCCCceeecccCCCch
Q 018286 81 AEASGSINPEKSSILEQD-RVSPLGIYNNSVCENDRSAADGSGKNEEEMDD----SGRMVEADYQSKGEKVELEYDEDNM 155 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (358)
||.+.....-.-+++.|+ |..+.....+..|....+.+...|...-.... +++......+ ++|+ .- +|...
T Consensus 81 ~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~-~~~~-~~--~~sd~ 156 (371)
T KOG2605|consen 81 AEMAAICQSVLFKVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNS-PEWL-GQ--SPSDP 156 (371)
T ss_pred HHHhhHHhhhhhhhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccC-chhc-cc--ccccc
Confidence 999999988888888888 55544444444444433333222221100001 1111111111 1111 11 23233
Q ss_pred hHhhhhcccccccccccchhcccccCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHH
Q 018286 156 EDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSD 235 (358)
Q Consensus 156 ~~~~~~~~~~~~~~~~dg~~gkrl~~~~p~p~~pk~ng~iPs~de~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~ 235 (358)
.....+......-....+++|.++++++|.+++|++++.+|+..+..++|+++.+++..+|+..++|.+||||+|||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~aD 236 (371)
T KOG2605|consen 157 LRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALAD 236 (371)
T ss_pred ccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccHH
Confidence 32322222222112467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHHHHHH--HhCCeEEEEecCCCceeEE
Q 018286 236 QLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD--SYGVKVFVLTSFKDTCYIE 313 (358)
Q Consensus 236 qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~--~y~v~I~V~ts~~~~~~I~ 313 (358)
|+|++++.|.++|++++++++++++.|+.|+++++.+|+++|++++.||+|+|+||+|. .+..++.++++.+.++|+.
T Consensus 237 Qvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~ 316 (371)
T KOG2605|consen 237 QVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQ 316 (371)
T ss_pred HhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceec
Confidence 99999999999999999999999999999999999999999999999999999999998 7788888888899999998
Q ss_pred EcCCCCCCCCeEEEEecCCCcceeeecC--CCCC-CCcccccccccCC
Q 018286 314 ILPHVPKSKRVIFLSFWAEVHYNSIYPE--GELP-LLDDKKKKKWWKF 358 (358)
Q Consensus 314 i~P~~~~~~~~I~Lsy~~~~HYdSV~p~--~diP-~~~~~~~~~~~~~ 358 (358)
+.|....+...+++.||...||+.++.. ...+ +...++||+||+|
T Consensus 317 ~~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~ 364 (371)
T KOG2605|consen 317 TPPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRKSLRR 364 (371)
T ss_pred cCcccccchhhhhhcccchhhhhhcccccccccccchhhccCCCchhh
Confidence 8887777777899999999999999984 3443 4555788899986
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.92 E-value=2.1e-25 Score=185.73 Aligned_cols=107 Identities=35% Similarity=0.608 Sum_probs=92.6
Q ss_pred cCCCChhHHHHHHHHh----cCChhHHHHHHHHHHHHh-hChhHHhhhcCccHHHHHHhhccCCccCchHHHHHHHHHhC
Q 018286 223 QGDGNCQFRSLSDQLY----RSPEHHMFVRQQVVNQLK-AHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYG 297 (358)
Q Consensus 223 ~GDGNCLFRALS~qL~----gsqd~H~~VR~~vV~yL~-~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~~y~ 297 (358)
||||||||||||+||+ +++..|.+||+.|++||+ +|++.|..|+..+ +|+++|+||+++||+|+|++|+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~ 74 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN 74 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence 7999999999999999 999999999999999999 9999999998655 9999999999999999999999
Q ss_pred CeEEEEecCCCc--eeEEEcCC--CCCCCCeEEEEecC-----CCcc
Q 018286 298 VKVFVLTSFKDT--CYIEILPH--VPKSKRVIFLSFWA-----EVHY 335 (358)
Q Consensus 298 v~I~V~ts~~~~--~~I~i~P~--~~~~~~~I~Lsy~~-----~~HY 335 (358)
++|+|++..... .++.+.+. .....++|+|+|.. ++||
T Consensus 75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 999999775543 34444431 23567899999998 9998
No 3
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-23 Score=200.10 Aligned_cols=139 Identities=19% Similarity=0.340 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcC---ChhHHHHHHHHHHHHhhChhHHhhhcC----------
Q 018286 201 EISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS---PEHHMFVRQQVVNQLKAHPEIYEGYVP---------- 267 (358)
Q Consensus 201 ~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gs---qd~H~~VR~~vV~yL~~n~d~f~~fV~---------- 267 (358)
..++.+.|.+.|...||..++||.||+|+|+||++||--. .-..+.||.++++||++|.+.|.+|+.
T Consensus 143 k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~ 222 (302)
T KOG2606|consen 143 KSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGP 222 (302)
T ss_pred hhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCH
Confidence 3456788999999999999999999999999999998633 356899999999999999999999873
Q ss_pred ccHHHHHHhhccCCccCchHHHHHHHHHhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecC-----CCcceeeecCC
Q 018286 268 MAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWA-----EVHYNSIYPEG 342 (358)
Q Consensus 268 ~~~~eYl~kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~-----~~HYdSV~p~~ 342 (358)
.+|+.||+.|+.++.|||++||.|+|.+|++||.||...++. +.|++...+ .++|.|+|+. |.||||+.+..
T Consensus 223 ~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~--~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~~ 299 (302)
T KOG2606|consen 223 EDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPI--LEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPLK 299 (302)
T ss_pred HHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCc--eeechhhCC-CCCeeeehHHhHHHHHhhhccccccc
Confidence 269999999999999999999999999999999999987643 456665433 6889999986 69999998754
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5e-15 Score=140.81 Aligned_cols=123 Identities=18% Similarity=0.399 Sum_probs=100.6
Q ss_pred cEEEEecCCCChhHHHHHHHHhcCCh-hHHHHHHHHHHHHhhChhHHh-hhcCccHHHHHHhhccCCccCchHHHHHHHH
Q 018286 217 LVENKVQGDGNCQFRSLSDQLYRSPE-HHMFVRQQVVNQLKAHPEIYE-GYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294 (358)
Q Consensus 217 L~i~~V~GDGNCLFRALS~qL~gsqd-~H~~VR~~vV~yL~~n~d~f~-~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~ 294 (358)
|.++-||.|.+|||+||++-+.+.-. .-.++|+.|.+.+.+||+.|. .+++..-.+||.++.|+.+|||.|||.++|+
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~ 189 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD 189 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence 56788999999999999999987533 236999999999999999996 5788899999999999999999999999999
Q ss_pred HhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeeecCC
Q 018286 295 SYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEG 342 (358)
Q Consensus 295 ~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~ 342 (358)
.|+|.|+++.... ..|.-+........-++|.| +|.|||++....
T Consensus 190 ~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~ 234 (307)
T KOG3288|consen 190 YYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNE 234 (307)
T ss_pred hhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhcc
Confidence 9999999997643 23333333333455677776 789999997543
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.49 E-value=4e-13 Score=126.31 Aligned_cols=94 Identities=24% Similarity=0.398 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhChhHHhhhcC----ccHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCC-----ceeEEEc
Q 018286 246 FVRQQVVNQLKAHPEIYEGYVP----MAYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKD-----TCYIEIL 315 (358)
Q Consensus 246 ~VR~~vV~yL~~n~d~f~~fV~----~~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~-----~~~I~i~ 315 (358)
.+|..+..||+.|++.|.+|+. .++++||. .+...+.-++|+.|.|||++++++|.|+.-.++ .....+.
T Consensus 141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~ 220 (244)
T PF10275_consen 141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP 220 (244)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence 6788999999999999999997 78999997 577788889999999999999999999976653 1222333
Q ss_pred CCCCCCCCeEEEEecCCCcceeeec
Q 018286 316 PHVPKSKRVIFLSFWAEVHYNSIYP 340 (358)
Q Consensus 316 P~~~~~~~~I~Lsy~~~~HYdSV~p 340 (358)
|......+.|+|.| .+.|||.+||
T Consensus 221 ~~~~~~~~~i~LLy-rpgHYdIly~ 244 (244)
T PF10275_consen 221 PDNESQEPQITLLY-RPGHYDILYP 244 (244)
T ss_dssp -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred CccCCCCCEEEEEE-cCCccccccC
Confidence 33335677899998 5679999986
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.1e-12 Score=123.22 Aligned_cols=94 Identities=18% Similarity=0.378 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhChhHHhhhcC--ccHHHHHHh-hccCCccCchHHHHHHHHHhCCeEEEEecCCCce---eEEEcCCC
Q 018286 245 MFVRQQVVNQLKAHPEIYEGYVP--MAYSDYLKK-MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTC---YIEILPHV 318 (358)
Q Consensus 245 ~~VR~~vV~yL~~n~d~f~~fV~--~~~~eYl~k-M~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~---~I~i~P~~ 318 (358)
..+|..+..+|++|+++|++|++ +++.+||.. +.....-.|||+|-||++++++.|.|....+..+ .-..+|
T Consensus 157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp-- 234 (256)
T KOG3991|consen 157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP-- 234 (256)
T ss_pred HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc--
Confidence 46789999999999999999996 689999984 5566667999999999999999999987765432 112233
Q ss_pred CCCCCeEEEEecCCCcceeeecC
Q 018286 319 PKSKRVIFLSFWAEVHYNSIYPE 341 (358)
Q Consensus 319 ~~~~~~I~Lsy~~~~HYdSV~p~ 341 (358)
..+.+.|+|.| ...|||.||++
T Consensus 235 e~s~P~I~LLY-rpGHYdilY~~ 256 (256)
T KOG3991|consen 235 EASAPEIYLLY-RPGHYDILYKK 256 (256)
T ss_pred cccCceEEEEe-cCCccccccCC
Confidence 34678899997 78999999974
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.2e-08 Score=96.12 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=86.3
Q ss_pred CCcEEEEecCCCChhHHHHHHHHhcC-----ChhHHHHHHHHHHHHhhChhHHhhhcC-------ccHHHHHHhhccCCc
Q 018286 215 YDLVENKVQGDGNCQFRSLSDQLYRS-----PEHHMFVRQQVVNQLKAHPEIYEGYVP-------MAYSDYLKKMNKSGE 282 (358)
Q Consensus 215 ~GL~i~~V~GDGNCLFRALS~qL~gs-----qd~H~~VR~~vV~yL~~n~d~f~~fV~-------~~~~eYl~kM~k~gt 282 (358)
-+++-..+.|||+|+|-+||+||.-. -+.-+..|-.=..|...+...|.++.- ..|++|++.|..+..
T Consensus 169 ~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~ 248 (306)
T COG5539 169 TWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDAS 248 (306)
T ss_pred HhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccccc
Confidence 35566779999999999999998521 122355555555666667777776642 379999999999999
Q ss_pred cCchHHHHHHHHHhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecC----CCcceee
Q 018286 283 WGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWA----EVHYNSI 338 (358)
Q Consensus 283 WGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~----~~HYdSV 338 (358)
||..+|+++||..|++++.++...+. .|.+.+...+. +.-+.|+. -.|||++
T Consensus 249 ~g~~~ei~qLas~lk~~~~~~nT~~~--~ik~n~c~~~~--~~e~~~~~Ha~a~GH~n~~ 304 (306)
T COG5539 249 DGITIEIQQLASLLKNPHYYTNTASP--SIKCNICGTGF--VGEKDYYAHALATGHYNFG 304 (306)
T ss_pred ccchHHHHHHHHHhcCceEEeecCCc--eEEeecccccc--chhhHHHHHHHhhcCcccc
Confidence 99999999999999999999976553 45555543222 23333332 2499986
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.7e-07 Score=88.88 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcC-ccHHHHHHhhccCCccC-chHHHHHHHHHhCCeEE
Q 018286 224 GDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP-MAYSDYLKKMNKSGEWG-DHVTLQAAADSYGVKVF 301 (358)
Q Consensus 224 GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~-~~~~eYl~kM~k~gtWG-g~iELqAaA~~y~v~I~ 301 (358)
.|..|+|+|++..++.- .-..+|..+...+.+||+.|...+. -+--.|+.++.+...|| |++|+.++++.|++.|+
T Consensus 119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~ 196 (306)
T COG5539 119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH 196 (306)
T ss_pred CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence 67999999999999753 5789999999999999999998765 58889999999999999 99999999999999999
Q ss_pred EEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeee
Q 018286 302 VLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIY 339 (358)
Q Consensus 302 V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~ 339 (358)
++....+.. .++.+. +..-.|++.| .+.|||...
T Consensus 197 ~Vdv~~~~~-dr~~~~--~~~q~~~i~f-~g~hfD~~t 230 (306)
T COG5539 197 VVDVDKDSE-DRYNSH--PYVQRISILF-TGIHFDEET 230 (306)
T ss_pred eeecchhHH-hhccCC--hhhhhhhhhh-cccccchhh
Confidence 998765431 223332 1223366665 689999886
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=71.77 E-value=9.4 Score=32.19 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=43.8
Q ss_pred ecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhc--cCCccCchHHHHHHHHHhCCe
Q 018286 222 VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMN--KSGEWGDHVTLQAAADSYGVK 299 (358)
Q Consensus 222 V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~--k~gtWGg~iELqAaA~~y~v~ 299 (358)
+..|.|||--|||..|.-+-+ .|. .-|..|.. .++.|+..++ ++.+|-|- .++|+.++|.
T Consensus 3 ~sR~NNCLVVAis~~L~~T~e---~l~----~~M~An~~--------~i~~y~~W~r~~~~STW~DC---~mFA~~LkVs 64 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVTLE---KLD----NLMQANVS--------TIKKYHTWLRKKRPSTWDDC---RMFADALKVS 64 (104)
T ss_pred ccCCCCeEeehHHHHhcchHH---HHH----HHHHhhHH--------HHHHHHHHHhcCCCCcHHHH---HHHHHhheeE
Confidence 567999999999999976532 121 22233322 3678888665 45678654 5799999999
Q ss_pred EEEE
Q 018286 300 VFVL 303 (358)
Q Consensus 300 I~V~ 303 (358)
|.|-
T Consensus 65 m~vk 68 (104)
T PF05415_consen 65 MQVK 68 (104)
T ss_pred EEEE
Confidence 9873
No 10
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=62.48 E-value=5.1 Score=34.48 Aligned_cols=83 Identities=13% Similarity=0.276 Sum_probs=48.6
Q ss_pred ecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHH-HHHhhccCCccCchHHHHHHHHHhCCeE
Q 018286 222 VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSD-YLKKMNKSGEWGDHVTLQAAADSYGVKV 300 (358)
Q Consensus 222 V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~e-Yl~kM~k~gtWGg~iELqAaA~~y~v~I 300 (358)
-|+||+|.+|+||..+++- ++..|.. |-+.-+....|.++-.|.-+-..++.|+
T Consensus 4 PP~DG~CG~H~i~aI~n~m-------------------------~~~~~t~~l~~~~r~~d~W~~dedl~~~iq~l~lPa 58 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNHM-------------------------MGGEFTTPLPQRNRPSDDWADDEDLYQVIQSLRLPA 58 (108)
T ss_pred CCCCCchHHHHHHHHHHHh-------------------------hccCCCccccccCCChHHccChHHHHHHHHHccCce
Confidence 5899999999999877521 1111111 1222334466998888766666667777
Q ss_pred EEEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeeecCC
Q 018286 301 FVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEG 342 (358)
Q Consensus 301 ~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~ 342 (358)
-+... ..-....|+.-..+.|+..-+..+
T Consensus 59 t~~~~-------------~~Cp~ArYv~~l~~qHW~V~~~~g 87 (108)
T PF05412_consen 59 TLDRN-------------GACPHARYVLKLDGQHWEVSVRKG 87 (108)
T ss_pred eccCC-------------CCCCCCEEEEEecCceEEEEEcCC
Confidence 66321 111223444444678888666555
No 11
>PRK09784 hypothetical protein; Provisional
Probab=56.53 E-value=6.2 Score=38.96 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.2
Q ss_pred HhhCCcEEEEecCCCChhHHHHHHHH
Q 018286 212 LQLYDLVENKVQGDGNCQFRSLSDQL 237 (358)
Q Consensus 212 L~~~GL~i~~V~GDGNCLFRALS~qL 237 (358)
=+.+||+-..|.|||-||.|||--..
T Consensus 195 n~~~glkyapvdgdgycllrailvlk 220 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAILVLK 220 (417)
T ss_pred hhhhCceecccCCCchhHHHHHHHhh
Confidence 35789999999999999999996543
No 12
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=34.20 E-value=55 Score=33.85 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCCCChhhhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 018286 193 GDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAH 258 (358)
Q Consensus 193 g~iPs~de~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n 258 (358)
..+|..+.+..+|+.+.+.|+..|..+..+.. -|+..|. +..+|+.+++.....
T Consensus 34 d~i~~~~~a~~EHd~f~~~Lr~~GveV~~l~d-------ll~e~l~-----~~~~r~~~l~~~~~~ 87 (405)
T TIGR01078 34 DDIPWVEDAQKEHDQFANTLRDNGIEVLYLED-------LLAETLD-----LPEAKEKFIDEFLSE 87 (405)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCEEEEhHH-------HHHHHhC-----CHHHHHHHHHHHHhh
Confidence 46889999999999999999999999887542 3344442 237777777666543
No 13
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=31.04 E-value=3.4e+02 Score=23.39 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHhcCC-hhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHHHHHHHhCCeEEEE
Q 018286 225 DGNCQFRSLSDQLYRSP-EHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVL 303 (358)
Q Consensus 225 DGNCLFRALS~qL~gsq-d~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~~y~v~I~V~ 303 (358)
.-+||--|||.|..-++ .-|..|...+=+=+.+|++. ++-|- .--.+.|+|..|+....|.
T Consensus 2 ~~~CLL~A~s~at~~~~~~LW~~L~~~lPDSlL~n~ei----------------~~~GL--STDhltaLa~~~~~~~~~h 63 (104)
T PF05381_consen 2 ALDCLLVAISQATSISPETLWATLCEILPDSLLDNPEI----------------RTLGL--STDHLTALAYRYHFQCTFH 63 (104)
T ss_pred CcceeHHhhhhhhCCCHHHHHHHHHHhCchhhcCchhh----------------hhcCC--cHHHHHHHHHHHheEEEEE
Confidence 35899999999986553 23444443333333333332 22221 1223569999999999999
Q ss_pred ecCCCceeEEEcCCCCCCCCeEEEEecCC--Cccee
Q 018286 304 TSFKDTCYIEILPHVPKSKRVIFLSFWAE--VHYNS 337 (358)
Q Consensus 304 ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~--~HYdS 337 (358)
+..+ .+.++.. .....+.|.|..| .||..
T Consensus 64 s~~~---~~~~Gi~--~as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 64 SDHG---VLHYGIK--DASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred cCCc---eEEeecC--CCceEEEEEeCCCCCCcccc
Confidence 8754 3456553 3456677777654 79987
No 14
>PRK01388 arginine deiminase; Provisional
Probab=25.54 E-value=1.2e+02 Score=31.42 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=27.7
Q ss_pred CCCCCChhhhhHHHHHHHHHhhCCcEEEEec
Q 018286 193 GDIPSPDEEISDHQRMLDRLQLYDLVENKVQ 223 (358)
Q Consensus 193 g~iPs~de~~~d~qrL~~rL~~~GL~i~~V~ 223 (358)
-.+|..+.+..+|+.+.+.|+..|..+..+.
T Consensus 41 ddi~~l~~aq~EHd~f~~~Lr~~GveV~~l~ 71 (406)
T PRK01388 41 DDVPWVERAQKEHDAFAQTLRDRGVEVLYLE 71 (406)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHCCCEEEEhH
Confidence 3688999999999999999999999988764
No 15
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=21.19 E-value=17 Score=37.40 Aligned_cols=92 Identities=12% Similarity=-0.104 Sum_probs=73.9
Q ss_pred HhhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHHH
Q 018286 212 LQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQA 291 (358)
Q Consensus 212 L~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELqA 291 (358)
+..++..+....-+++|.+|...+.+...++-+..-+.++|.|...+.+.|..=-+.....|...|...++|-+...++|
T Consensus 50 ~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a 129 (371)
T KOG2605|consen 50 TDGYNNKRYGEVDRDFMIARGHQDEVLTVEDAEMAAICQSVLFKVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQA 129 (371)
T ss_pred eccccCccccchhhhhhhhcccccccccccHHHHhhHHhhhhhhhhhhhcccCCCCCcccccCCCCCccccccccccccc
Confidence 44566677778889999999999999999999999999999999999998875333456677888888999988888888
Q ss_pred HHHHhCCeEEEE
Q 018286 292 AADSYGVKVFVL 303 (358)
Q Consensus 292 aA~~y~v~I~V~ 303 (358)
++.--.+.+...
T Consensus 130 ~s~~~~~~~~~~ 141 (371)
T KOG2605|consen 130 ASFGGLEIDLEV 141 (371)
T ss_pred ccccccccchhh
Confidence 776555444433
No 16
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=20.76 E-value=1.9e+02 Score=23.92 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCcEEEEecCCC-ChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCc
Q 018286 204 DHQRMLDRLQLYDLVENKVQGDG-NCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGE 282 (358)
Q Consensus 204 d~qrL~~rL~~~GL~i~~V~GDG-NCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gt 282 (358)
=++.|.+.|..+|+ || .|+-|||-..-.. ...|.-|=..++..|.+-++.-+. .--.+|...+ +.|.
T Consensus 9 lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~~-~~~~~Gll~ell~ilftps~~~~~---~~~~~Y~~A~-~~G~ 76 (95)
T smart00718 9 LYEALENLLDQLGF-------NGRACLLRAICESAQK-LDDHRGLLGELLRIVLTPPDELEE---VLDPDYREAY-RAGR 76 (95)
T ss_pred HHHHHHHHHHHcCC-------CchhhHHHHHHHcccc-cccccchHHHHHHHhhcCCcchhh---hchHHHHHHH-HcCC
Confidence 35778888999995 77 9999999877543 334444666777777666521111 1234565544 3344
Q ss_pred cCchH
Q 018286 283 WGDHV 287 (358)
Q Consensus 283 WGg~i 287 (358)
-|++.
T Consensus 77 ~g~dC 81 (95)
T smart00718 77 AGGDC 81 (95)
T ss_pred CCCCH
Confidence 45554
Done!