Query 018287
Match_columns 358
No_of_seqs 195 out of 401
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03103 GDP-L-galactose-hexos 100.0 5.7E-92 1.2E-96 696.3 32.6 337 20-357 23-401 (403)
2 KOG2720 Predicted hydrolase (H 100.0 8.8E-74 1.9E-78 548.4 21.4 317 21-351 27-390 (431)
3 COG0537 Hit Diadenosine tetrap 99.2 5.7E-11 1.2E-15 103.6 9.0 89 121-213 2-103 (138)
4 PRK10687 purine nucleoside pho 99.2 5.2E-11 1.1E-15 101.5 7.8 91 119-213 2-106 (119)
5 cd01276 PKCI_related Protein K 99.1 2.7E-10 5.8E-15 93.4 8.5 89 121-213 1-103 (104)
6 cd01278 aprataxin_related apra 99.1 6E-10 1.3E-14 91.5 9.0 90 121-213 1-104 (104)
7 COG4360 APA2 ATP adenylyltrans 98.9 7.1E-09 1.5E-13 97.2 10.1 183 144-338 91-297 (298)
8 cd01275 FHIT FHIT (fragile his 98.8 1.7E-08 3.7E-13 86.0 8.8 89 122-213 1-102 (126)
9 cd01277 HINT_subgroup HINT (hi 98.8 1.9E-08 4.1E-13 82.0 8.7 89 121-213 1-102 (103)
10 PF01230 HIT: HIT domain; Int 98.8 2.5E-08 5.3E-13 81.2 7.6 70 144-213 12-94 (98)
11 cd00468 HIT_like HIT family: H 98.7 5.9E-08 1.3E-12 76.2 8.0 69 144-212 4-85 (86)
12 PRK05270 galactose-1-phosphate 98.6 9.8E-07 2.1E-11 90.2 14.5 191 118-316 170-411 (493)
13 KOG3275 Zinc-binding protein o 98.3 1.5E-06 3.3E-11 73.4 6.6 90 119-213 15-118 (127)
14 TIGR01239 galT_2 galactose-1-p 98.3 2.1E-05 4.5E-10 80.5 15.1 190 119-316 168-408 (489)
15 PF11969 DcpS_C: Scavenger mRN 98.2 2.8E-06 6.1E-11 71.9 6.2 92 122-218 2-108 (116)
16 PRK11720 galactose-1-phosphate 98.0 1.1E-05 2.4E-10 80.6 6.4 92 119-213 193-301 (346)
17 TIGR00209 galT_1 galactose-1-p 98.0 1.3E-05 2.9E-10 80.0 6.4 91 119-213 193-301 (347)
18 KOG3379 Diadenosine polyphosph 97.8 7.1E-05 1.5E-09 65.1 7.6 70 144-213 23-105 (150)
19 COG4468 GalT Galactose-1-phosp 97.6 0.00036 7.8E-09 70.1 10.7 190 120-317 174-414 (503)
20 PLN02643 ADP-glucose phosphory 97.6 0.00012 2.6E-09 72.8 7.4 88 119-213 197-299 (336)
21 PF04677 CwfJ_C_1: Protein sim 97.6 0.00039 8.5E-09 59.6 9.4 91 118-214 9-108 (121)
22 cd00608 GalT Galactose-1-phosp 97.6 0.00011 2.4E-09 72.7 6.3 91 119-213 183-293 (329)
23 PF09830 ATP_transf: ATP adeny 97.5 0.00012 2.6E-09 55.7 4.5 59 278-338 1-62 (62)
24 KOG4359 Protein kinase C inhib 97.1 0.0022 4.7E-08 56.1 7.7 92 119-213 30-135 (166)
25 KOG2476 Uncharacterized conser 96.8 0.0016 3.4E-08 66.8 5.4 86 119-213 318-415 (528)
26 cd00608 GalT Galactose-1-phosp 96.5 0.3 6.6E-06 48.4 18.5 221 102-335 14-329 (329)
27 COG1085 GalT Galactose-1-phosp 96.4 0.058 1.3E-06 53.8 13.2 74 258-337 243-331 (338)
28 PLN02643 ADP-glucose phosphory 95.6 1.7 3.7E-05 43.4 19.6 224 102-338 16-335 (336)
29 PRK11720 galactose-1-phosphate 95.4 1.5 3.3E-05 44.0 18.2 222 102-336 24-339 (346)
30 TIGR00209 galT_1 galactose-1-p 95.0 2.6 5.7E-05 42.3 18.5 222 102-336 24-339 (347)
31 KOG0562 Predicted hydrolase (H 90.5 0.31 6.7E-06 44.1 3.8 75 145-220 23-111 (184)
32 KOG2477 Uncharacterized conser 68.8 17 0.00037 38.5 7.3 92 119-213 406-506 (628)
33 PF02611 CDH: CDP-diacylglycer 66.5 11 0.00025 35.7 5.2 69 147-216 34-119 (222)
34 PRK05471 CDP-diacylglycerol py 58.5 12 0.00026 36.1 3.9 68 148-216 64-148 (252)
35 TIGR00672 cdh CDP-diacylglycer 52.6 25 0.00054 34.0 4.9 61 156-216 70-147 (250)
36 PF02744 GalP_UDP_tr_C: Galact 40.0 1.4E+02 0.003 26.8 7.5 90 120-213 13-119 (166)
37 KOG0604 MAP kinase-activated p 37.1 70 0.0015 32.3 5.5 100 256-356 161-305 (400)
38 PF02500 DNA_pack_N: Probable 27.9 49 0.0011 32.6 2.7 33 160-198 191-224 (284)
39 PF10114 PocR: Sensory domain 26.1 1.2E+02 0.0027 26.3 4.8 72 285-357 81-162 (173)
40 PF03241 HpaB: 4-hydroxyphenyl 22.3 1.2E+02 0.0025 28.2 4.0 44 309-352 114-159 (205)
41 PF11460 DUF3007: Protein of u 22.0 1.4E+02 0.003 25.2 4.0 31 317-349 72-102 (104)
42 COG0177 Nth Predicted EndoIII- 21.1 1.9E+02 0.0041 27.3 5.1 58 296-355 42-99 (211)
43 TIGR01837 PHA_granule_1 poly(h 20.9 1.6E+02 0.0035 24.9 4.3 40 317-356 72-112 (118)
No 1
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=100.00 E-value=5.7e-92 Score=696.27 Aligned_cols=337 Identities=39% Similarity=0.583 Sum_probs=301.1
Q ss_pred ccccCCCCcc-CcccccceeecCCccccCCCCCCCCCC-CCccchHHHHHHHHHHHHHHhCCcccccCCeeEEEecCCce
Q 018287 20 EQLKCSFLCF-QGVKTLNYCLGNQSFFDNTSFVEPSGV-PEDLSLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKK 97 (358)
Q Consensus 20 ~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~s~fd~~ll~~We~a~~~glFrY~L~~~~tK~l~G~~~ 97 (358)
-++||.+.|+ +|+|+|||+|+..+..+.......+.. ...+|+||++|+++||++|++|+|||||++|+||+|||+||
T Consensus 23 ~~~~~~~~c~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~s~ld~~L~~~Wedr~~~GlFrY~l~~~~tkvlpG~~g 102 (403)
T PLN03103 23 CGRNCLGKCCLPGAKLPLYAFKKVSKDDSGKLGSFSSKPEPSVSFLDSLLLAQWEDRMARGLFRYDVTACETKVIPGKYG 102 (403)
T ss_pred cchhhhhhcCCCCccCchhhhcccccccccccccccccCcCCccHHHHHHHHHHHHHHhcCCcccccccceeEEecCccc
Confidence 3568887665 999999999999987543322223333 34599999999999999999999999999999999999999
Q ss_pred EEEEEcCccccCcc----------------CCcccc-CCCceeeeecCCCcccccccCCccc--CCCceEEEEeCcCCCC
Q 018287 98 FLAQLNEKWIMDPF----------------ILNSID-QNEELLFCVTRSEKANSELIPSAAV--PNDSILVIINANPIEY 158 (358)
Q Consensus 98 f~aQlNp~R~~~~~----------------kfnf~k-~~~eclfc~~~~~~~~~e~~~~~~~--~~~~~~VliN~~Pi~~ 158 (358)
|+||||++|++++| ||||+| +++|++||+..++++..+..++..+ .++...|+||+|||++
T Consensus 103 FvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~~~~~~~~~~~~~~~~~~~~s~~~VlINvsPI~~ 182 (403)
T PLN03103 103 FIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDDIPEFFPSAPIDASNSPNVVAINVSPIEY 182 (403)
T ss_pred eEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEecCCCcccccccCCccccCCCccEEEEeCCCCcc
Confidence 99999999999976 899999 9999999999887766666665544 2677899999999999
Q ss_pred CeEEEeecCCCCC--CCCHHHHHHHHHHHHHcCCCceeEeeccCCCCc--CceeeeeeecCceecccccCCccccc-CCC
Q 018287 159 GHVFVVPCGSNRL--YPDARSFEMIVRIAFEINNYSFRLFYDCSSPGA--SHVYFQACYFPDHLPVELMPIDTFFS-DGQ 233 (358)
Q Consensus 159 gH~LlVP~~~~~~--~lt~~~l~la~~~~~~~~~~gf~vGyNsgga~a--nHLHfh~~yl~~~lPiE~~~~~~l~~-~~~ 233 (358)
||+|+||++..++ +|+.+++++|+++++++++|+|||||||.||.| ||||||+||++++||||++|++++.. ...
T Consensus 183 gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa~yl~~~lPvE~ap~~~l~~~~~~ 262 (403)
T PLN03103 183 GHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINHLHFQAYYLANPFPVEKAPTVRIPHGTAK 262 (403)
T ss_pred CeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccccCcceeeeeecccCCCCccccCccccccccccC
Confidence 9999999998876 999999999999999999999999999877764 99999999999999999999998852 224
Q ss_pred CceEEEEccCCceeEEEEEEecCCHHHHHHHHHHHHHHhhhcCCCceEEEEeCCeEEEEEeccC--------------CC
Q 018287 234 RGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKS--------------AI 299 (358)
Q Consensus 234 ~g~~v~~l~dyP~~~~vf~~~~~~~e~~~~~~~~~~~~L~~~ni~~Nll~~~~g~rv~ifPR~~--------------~~ 299 (358)
+|+++|++.|||+++|||++ +++.+++++.+++++++|+++|+|||||+|++|+||||||+|+ .+
T Consensus 263 ~g~~vy~L~~yP~~~lvf~~-~~~~~~l~~~v~~~~~~L~~~niP~NL~i~~~g~rvflfP~Cy~~k~~~g~v~~~lL~s 341 (403)
T PLN03103 263 SGVKVSELVDYPVRGLVFEG-GSDLEDLANSVADACICLQDNNIPYNLLISDCGKRVFLFPQCYAEKQALGEVSQELLDT 341 (403)
T ss_pred CCceEEEecCCCceEEEEEe-CccHHHHHHHHHHHHHhhccCCcceEEEEEcCCeEEEEeCchhhhhhhccccchhHhhc
Confidence 57899999999999999996 6889999999999999999999999999999999999999664 27
Q ss_pred CcCchhccccceeeecChHHHhhcCHHHHHHHHHhccCCHHHHHHHHHHHHhh--hhhhc
Q 018287 300 SGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSI--ASKLA 357 (358)
Q Consensus 300 ~~npa~~ElaG~lv~~r~eDFe~lTee~~~~il~evslsee~f~~l~~~~~~~--~~~l~ 357 (358)
+||||+||||||||+||++|||++||+.|+++|+|||||+++|++|+++|++. +|.|+
T Consensus 342 ~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~~i~~~~~~~~~~ 401 (403)
T PLN03103 342 QVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCFAASAADCLV 401 (403)
T ss_pred cCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHHHHHhcccccccc
Confidence 79999999999999999999999999999999999999999999999999998 55553
No 2
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=100.00 E-value=8.8e-74 Score=548.43 Aligned_cols=317 Identities=30% Similarity=0.475 Sum_probs=276.0
Q ss_pred cccCCCC-ccCc----------ccccceeecCCccccCCCCCCCCCCCCccchHHHHHHHHHHHHHHhCCcccccCCeeE
Q 018287 21 QLKCSFL-CFQG----------VKTLNYCLGNQSFFDNTSFVEPSGVPEDLSLLDALLLAQWEERMWRGCFRYDVTASEI 89 (358)
Q Consensus 21 ~~~~~~~-~~~~----------~~~~~y~~~~~~~~~~~~~~~~~~~~~~~s~fd~~ll~~We~a~~~glFrY~L~~~~t 89 (358)
.++|... |.+| +|+|+|.-|+.+. ..+. ....-..++.++++.+||+++++|+|||+|++|+|
T Consensus 27 ~~~~L~l~~l~s~~~r~~~~~~~~~ply~~~ns~~---~~e~---~~e~~~~~l~~l~~~rWe~~~q~glF~Y~l~~c~t 100 (431)
T KOG2720|consen 27 GRNCLPLCCLNSADCRQKEDQEVKLPLYRCKNSKK---SYET---SLEGPVQFLESLVKGRWEDRFQRGLFRYDLTACET 100 (431)
T ss_pred cccccchhhccccccccchhhhhhhhHhhcccccc---cccc---ccccHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence 4677554 4578 8999999998875 1111 11122679999999999999999999999999999
Q ss_pred EEecCCceEEEEEcCcccc-Ccc--------------CCcccc-CCCceeeeecCCCcccccccCCcccCCCceEEEEeC
Q 018287 90 KVISGGKKFLAQLNEKWIM-DPF--------------ILNSID-QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINA 153 (358)
Q Consensus 90 K~l~G~~~f~aQlNp~R~~-~~~--------------kfnf~k-~~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~ 153 (358)
|+|||+|||+||||.+|.. +|| ||||+| +++|++|.++..-+- ++. -+.++ .+|+||+
T Consensus 101 r~ipGkygf~aqLN~~R~~lrrrP~~f~~v~~~F~h~~FNF~Kv~~~Ellf~~k~~~~~----m~~-dpe~~-~vvaIN~ 174 (431)
T KOG2720|consen 101 RVIPGKYGFYAQLNEGRNHLRRRPTEFRVVLQPFDHMKFNFTKVGQEELLFQFKAATDP----MPG-DPENS-PVVAINV 174 (431)
T ss_pred eccCcccceeeeeccccchhhcCCchhhhcccccccceecccccccceEEEEEecCCCC----CCC-CcccC-ceEEEec
Confidence 9999999999999999944 443 899999 999999998765211 110 11133 4999999
Q ss_pred cCCCCCeEEEeecCCCCC--CCCHHHHHHHHHHHHHcCCCceeEeeccCCCCc--CceeeeeeecCceecccccCCcccc
Q 018287 154 NPIEYGHVFVVPCGSNRL--YPDARSFEMIVRIAFEINNYSFRLFYDCSSPGA--SHVYFQACYFPDHLPVELMPIDTFF 229 (358)
Q Consensus 154 ~Pi~~gH~LlVP~~~~~~--~lt~~~l~la~~~~~~~~~~gf~vGyNsgga~a--nHLHfh~~yl~~~lPiE~~~~~~l~ 229 (358)
|||++||+|+||++..|+ +||..++++|+.+|+++.+|+||+||||+||+| ||||||++||+.++|||++++.+|.
T Consensus 175 sPie~~H~LiiP~V~kc~pQrit~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y~p~d~~i~~~p~~~l~ 254 (431)
T KOG2720|consen 175 SPIEYGHVLIIPRVLKCLPQRITHKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYYLPMDFPIEKAPLDKLT 254 (431)
T ss_pred CccccCcEEEecchhccCcceeeHHHHHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhhccccCccccCcchhhc
Confidence 999999999999999997 999999999999999999999999999999998 9999999999999999999999997
Q ss_pred cCCCCceEEE-EccCCceeEEEEEEecCCHHHHHHHHHHHHHHhhhcCCCceEEEEeCCeEEEEEeccC-----------
Q 018287 230 SDGQRGIYIS-TLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFLFLQKS----------- 297 (358)
Q Consensus 230 ~~~~~g~~v~-~l~dyP~~~~vf~~~~~~~e~~~~~~~~~~~~L~~~ni~~Nll~~~~g~rv~ifPR~~----------- 297 (358)
+ ...++.+. .+.+||+..+.+++ +++.+++++.+++++.+|+.+|+|||||+++.|.|++.-|+|+
T Consensus 255 ~-~vn~~~ir~p~~~~pv~~~~~ds-~~~~~e~~d~vy~c~~~l~~nN~phNlfls~~grR~g~~pqcyvf~~a~~e~~~ 332 (431)
T KOG2720|consen 255 T-TVNGVKIRAPLLGYPVRFLLNDS-GEQVAELVDTVYDCAVCLQNNNIPHNLFLSDQGRRIGLSPQCYVFKQALGEVSV 332 (431)
T ss_pred c-ccceEEecccccccceEEEEecc-chHHHHHHHHHHHHHHHHhhCCCCceEEeeccCccccCCCceEEehhhhccccc
Confidence 6 36677777 78999999999998 6899999999999999999999999999998887766666665
Q ss_pred ---CCCcCchhccccceeeecChHHHhhcCHHHHHHHHH-hccCCHHHHHHHHHHHHh
Q 018287 298 ---AISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLS-AVSLNDEGFQVVKQLCCS 351 (358)
Q Consensus 298 ---~~~~npa~~ElaG~lv~~r~eDFe~lTee~~~~il~-evslsee~f~~l~~~~~~ 351 (358)
.++||||+||||||+++||++|||.+||+++|++|+ |+|+++++|.++..++++
T Consensus 333 ~k~~tqfNpa~~ElaG~m~l~~~~~~E~asE~~v~r~i~teasls~e~fre~~tli~e 390 (431)
T KOG2720|consen 333 NKLLTQFNPAVWELAGHMVLKRKEDYEGASELQVWRLIATEASLSEERFREVITLIFE 390 (431)
T ss_pred ccChhhcChHHHhhcCCccccchhhhccccHHHHHHHHHHHhccCHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999 999999999988877754
No 3
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.20 E-value=5.7e-11 Score=103.61 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=63.5
Q ss_pred ceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH----HHHHHHHH---HHHc-CC
Q 018287 121 ELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR----SFEMIVRI---AFEI-NN 190 (358)
Q Consensus 121 eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~----~l~la~~~---~~~~-~~ 190 (358)
.|+||..-..+.... .+..++++++++|.+|+++||+|+||.+|... .++++ ++..+..+ ++++ ++
T Consensus 2 ~ciFc~ii~~e~~~~----~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~ 77 (138)
T COG0537 2 MCIFCKIIRGEIPAN----KVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGA 77 (138)
T ss_pred CceeeeeecCCCCce----EEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 699996544322111 23347889999999999999999999988754 88887 33333333 3333 68
Q ss_pred CceeEeeccC--CC-CcCceeeeeee
Q 018287 191 YSFRLFYDCS--SP-GASHVYFQACY 213 (358)
Q Consensus 191 ~gf~vGyNsg--ga-~anHLHfh~~y 213 (358)
+|||++.|.| |+ ...|+|+|+.-
T Consensus 78 ~g~ni~~N~g~~agq~V~HlH~HvIP 103 (138)
T COG0537 78 DGYNIGINNGKAAGQEVFHLHIHIIP 103 (138)
T ss_pred CceEEEEecCcccCcCcceEEEEEcC
Confidence 8999999955 33 34999999988
No 4
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.19 E-value=5.2e-11 Score=101.47 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH-------HHHHHHHHHHHc-
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR-------SFEMIVRIAFEI- 188 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~-------~l~la~~~~~~~- 188 (358)
.++|+||..-+.+.... .+..++.++++++.+|+.+||+|+||.+|... .++++ ++..+.+++++.
T Consensus 2 ~~~CiFC~I~~g~~p~~----~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~ 77 (119)
T PRK10687 2 AEETIFSKIIRREIPSD----IVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEG 77 (119)
T ss_pred CCCCchhhhhcCCCCCC----EEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhC
Confidence 35799997644332111 22347889999999999999999999999854 88876 233344444432
Q ss_pred -CCCceeEeeccC--CCCc-Cceeeeeee
Q 018287 189 -NNYSFRLFYDCS--SPGA-SHVYFQACY 213 (358)
Q Consensus 189 -~~~gf~vGyNsg--ga~a-nHLHfh~~y 213 (358)
+..||++++|.| |+.. .|+|+|+.-
T Consensus 78 ~~~~g~~l~~n~G~~agQ~V~HlHiHvI~ 106 (119)
T PRK10687 78 IAEDGYRLIMNTNRHGGQEVYHIHMHLLG 106 (119)
T ss_pred CCCCceEEEEeCCCcCCcccCEEEEEECC
Confidence 578999999965 3333 899999987
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.12 E-value=2.7e-10 Score=93.43 Aligned_cols=89 Identities=17% Similarity=0.325 Sum_probs=63.2
Q ss_pred ceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHH-------HHHHHHHHHHHcC--
Q 018287 121 ELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDAR-------SFEMIVRIAFEIN-- 189 (358)
Q Consensus 121 eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~-------~l~la~~~~~~~~-- 189 (358)
.|+||...+.+.... .+..++.++++++.+|..+||+|+||.+|.. + .|+++ ++..+.++++...
T Consensus 1 ~C~fc~i~~~e~~~~----iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~ 76 (104)
T cd01276 1 DCIFCKIIRGEIPAK----KVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIA 76 (104)
T ss_pred CCcceecccCCCccC----EEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCC
Confidence 499997654322111 2334788999999999999999999999985 4 76653 4444555555554
Q ss_pred CCceeEeeccC--CCCc-Cceeeeeee
Q 018287 190 NYSFRLFYDCS--SPGA-SHVYFQACY 213 (358)
Q Consensus 190 ~~gf~vGyNsg--ga~a-nHLHfh~~y 213 (358)
++||++++|.| ++.. .|+|+|+..
T Consensus 77 ~~~~n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 77 EDGYRLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred CCCEEEEEeCCCCCCCceeEEEEEEeC
Confidence 78999999955 2223 899999875
No 6
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.08 E-value=6e-10 Score=91.54 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=62.3
Q ss_pred ceeeeecCCCcc-cccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHH-------HHHHHHHHHHH---
Q 018287 121 ELLFCVTRSEKA-NSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDAR-------SFEMIVRIAFE--- 187 (358)
Q Consensus 121 eclfc~~~~~~~-~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~-------~l~la~~~~~~--- 187 (358)
.|+||.....+. ++.. .+..++.+.++++.+|..+||+|++|.+|.. + .++++ +++.+.+.+++
T Consensus 1 ~c~fc~i~~~e~~~~~~---iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 77 (104)
T cd01278 1 LCHFCDIAKRRDPDPED---QVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDN 77 (104)
T ss_pred CCccccCccCCCCCCcc---EEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcC
Confidence 389996543321 1121 2334788999999999999999999999985 4 88876 33334443333
Q ss_pred cCCCceeEeeccCCCC-cCceeeeeee
Q 018287 188 INNYSFRLFYDCSSPG-ASHVYFQACY 213 (358)
Q Consensus 188 ~~~~gf~vGyNsgga~-anHLHfh~~y 213 (358)
..++|||+|+|++-.. -+|+|+|+.+
T Consensus 78 ~~~~~~n~g~h~~p~~~v~H~H~Hvi~ 104 (104)
T cd01278 78 TDPSEFRFGFHAPPFTSVSHLHLHVIA 104 (104)
T ss_pred CCccCeEEEeCCCCCcCeeeEEEEeeC
Confidence 3577999999976532 2999999863
No 7
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=98.91 E-value=7.1e-09 Score=97.19 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=111.1
Q ss_pred CCceEEEEeCcCCCCCeEEEeecCCC-CC-CCCHHHHHHHHHHHHHcCCCceeEeeccC-CCCc--CceeeeeeecCcee
Q 018287 144 NDSILVIINANPIEYGHVFVVPCGSN-RL-YPDARSFEMIVRIAFEINNYSFRLFYDCS-SPGA--SHVYFQACYFPDHL 218 (358)
Q Consensus 144 ~~~~~VliN~~Pi~~gH~LlVP~~~~-~~-~lt~~~l~la~~~~~~~~~~gf~vGyNsg-ga~a--nHLHfh~~yl~~~l 218 (358)
++.+..++|.||.-+.|+|+|-+--. +. .||..-+..|...+... .| -|||||| .|.+ +|=|+|++.++
T Consensus 91 s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL~~l--dg-lvFYNsGp~aGaSq~HkHLQi~pmP--- 164 (298)
T COG4360 91 SDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVLCGL--DG-LVFYNSGPIAGASQDHKHLQIVPMP--- 164 (298)
T ss_pred chhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHHhcc--cc-eEEecCCCCcCcCCCccceeEeecc---
Confidence 34678999999999999998887655 44 88877666666665444 33 8999987 2333 99999999854
Q ss_pred cccccCCccc-----ccCC--CCceE-EEEccCCceeEEEEEEecCCHHHHHH--HHHHHHHHh--hhc-----CCCceE
Q 018287 219 PVELMPIDTF-----FSDG--QRGIY-ISTLIDYPIKTILFEYTYNNRIIMME--AISEICSSL--REK-----NISYNL 281 (358)
Q Consensus 219 PiE~~~~~~l-----~~~~--~~g~~-v~~l~dyP~~~~vf~~~~~~~e~~~~--~~~~~~~~L--~~~-----ni~~Nl 281 (358)
-++....-+. .+.. ..++. .+-+. |.+.=.+.. .+..++.. ...++...+ ..+ .-+||+
T Consensus 165 fv~~~~~lpn~~dhFl~t~ntePlvsF~hava--pl~~~~~~d--~dlgamcy~sIyqrlL~~~gl~t~e~p~~~~sYNl 240 (298)
T COG4360 165 FVAFQDQLPNGKDHFLPTFNTEPLVSFAHAVA--PLPSAWVVD--EDLGAMCYLSIYQRLLTFFGLWTNEDPELSKSYNL 240 (298)
T ss_pred ccccccccCchHhhcchhcccCCCcchhheec--cCChHhccC--hhhhhHHHHHHHHHHHHHHhhhccCCcccCcceee
Confidence 1222221110 0100 01110 11111 111101111 22222211 112222222 122 345899
Q ss_pred EEEeCCeEEEEEeccC--CCCcCchhccccceeeecChHHHhhcCHHHHHHHHHhccCC
Q 018287 282 LISDCGKRIFLFLQKS--AISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLN 338 (358)
Q Consensus 282 l~~~~g~rv~ifPR~~--~~~~npa~~ElaG~lv~~r~eDFe~lTee~~~~il~evsls 338 (358)
+.++. -+.|.||.. .-..+.-+.--||.|.+|+++.++.+|+.-=+.||.||.+.
T Consensus 241 llTre--wi~iVPRSqe~~q~I~vNslGfaG~lLvkn~e~le~ltq~gpl~iL~evgia 297 (298)
T COG4360 241 LLTRE--WICIVPRSQEDSQSISVNSLGFAGMLLVKNEEELEILTQHGPLAILLEVGIA 297 (298)
T ss_pred eeeee--eEEEeecchhhhheecccccccceeEEecCHHHHHHHhhCCchhhHhhhccC
Confidence 99986 577899998 33344556667899999999999999999999999999864
No 8
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=98.82 E-value=1.7e-08 Score=85.98 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=61.5
Q ss_pred eeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHH----H---HHHHHHHc-CCC
Q 018287 122 LLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFE----M---IVRIAFEI-NNY 191 (358)
Q Consensus 122 clfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~----l---a~~~~~~~-~~~ 191 (358)
|+||.....+.+... .+..++.+.++++.+|..+||+|++|.+|.. + .|+++... + +.+.+++. +++
T Consensus 1 C~fC~i~~~e~~~~~---iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~ 77 (126)
T cd01275 1 CVFCDIPIKPDEDNL---VFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPD 77 (126)
T ss_pred CccccCccCCCcccc---EEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789965443321011 1234788999999999999999999999985 4 88876222 2 22333333 678
Q ss_pred ceeEeeccCC--CCc-Cceeeeeee
Q 018287 192 SFRLFYDCSS--PGA-SHVYFQACY 213 (358)
Q Consensus 192 gf~vGyNsgg--a~a-nHLHfh~~y 213 (358)
+|++++|+|- +.. .|+|+|++.
T Consensus 78 ~~n~~~~~g~~~gq~v~H~HiHiiP 102 (126)
T cd01275 78 GFNIGINDGKAGGGIVPHVHIHIVP 102 (126)
T ss_pred ceEEEEeCCcccCCCcCEEEEEEeC
Confidence 9999999652 223 899999986
No 9
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=98.82 E-value=1.9e-08 Score=81.96 Aligned_cols=89 Identities=18% Similarity=0.303 Sum_probs=61.9
Q ss_pred ceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHH-------HHHHHHHHHc-CC
Q 018287 121 ELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSF-------EMIVRIAFEI-NN 190 (358)
Q Consensus 121 eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l-------~la~~~~~~~-~~ 190 (358)
.|+||..-..+.... .+..++.+.++++.+|..+||++++|.+|.. + .|+++.. ..+.+.+.+. ++
T Consensus 1 ~C~~c~ii~~e~~~~----iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~ 76 (103)
T cd01277 1 DCIFCKIIAGEIPSY----KVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKA 76 (103)
T ss_pred CCccccccCCCCCCC----EEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 389997544332112 2334788999999999999999999999995 5 8888621 1222233333 78
Q ss_pred CceeEeeccC--CCCc-Cceeeeeee
Q 018287 191 YSFRLFYDCS--SPGA-SHVYFQACY 213 (358)
Q Consensus 191 ~gf~vGyNsg--ga~a-nHLHfh~~y 213 (358)
++||+++|.+ ++.. .|+|+|++.
T Consensus 77 ~~~n~~~~~~~~~g~~~~H~HiHiiP 102 (103)
T cd01277 77 DGLNILQNNGRAAGQVVFHVHVHVIP 102 (103)
T ss_pred CceEEEEeCCcccCcccCEEEEEEcc
Confidence 8999999954 2223 899999864
No 10
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=98.77 E-value=2.5e-08 Score=81.17 Aligned_cols=70 Identities=14% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH----HHHHHH---HHHHHc-CCCceeEeeccCCCC---cCceeee
Q 018287 144 NDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR----SFEMIV---RIAFEI-NNYSFRLFYDCSSPG---ASHVYFQ 210 (358)
Q Consensus 144 ~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~----~l~la~---~~~~~~-~~~gf~vGyNsgga~---anHLHfh 210 (358)
++.+.++++.+|..+||+|+||.+|... .++++ +..++. +.++.. ++.||+++.|.|+++ -.|+|+|
T Consensus 12 ~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~H 91 (98)
T PF01230_consen 12 DDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHFH 91 (98)
T ss_dssp -SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EEE
T ss_pred CCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEEE
Confidence 6789999999999999999999998854 88865 222222 222223 788999999954322 3899999
Q ss_pred eee
Q 018287 211 ACY 213 (358)
Q Consensus 211 ~~y 213 (358)
++.
T Consensus 92 viP 94 (98)
T PF01230_consen 92 VIP 94 (98)
T ss_dssp EEE
T ss_pred Eec
Confidence 976
No 11
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=98.71 E-value=5.9e-08 Score=76.25 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=51.1
Q ss_pred CCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHH----HHHHHHHHHHH----cCCCceeEeeccCC--CCc-Cceeee
Q 018287 144 NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDAR----SFEMIVRIAFE----INNYSFRLFYDCSS--PGA-SHVYFQ 210 (358)
Q Consensus 144 ~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~----~l~la~~~~~~----~~~~gf~vGyNsgg--a~a-nHLHfh 210 (358)
++.+.+++|.+|..+||+++||.+|.. + .++++ +..++.++++. .+.++|++++|.|. +.. .|+|+|
T Consensus 4 ~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~h 83 (86)
T cd00468 4 DEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLH 83 (86)
T ss_pred cCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEE
Confidence 577899999999999999999988884 4 88875 23333333332 26779999999652 222 899999
Q ss_pred ee
Q 018287 211 AC 212 (358)
Q Consensus 211 ~~ 212 (358)
++
T Consensus 84 ii 85 (86)
T cd00468 84 VL 85 (86)
T ss_pred eC
Confidence 85
No 12
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.58 E-value=9.8e-07 Score=90.20 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=133.1
Q ss_pred CCCceeeeecCCCcccc------cccCC--cccCCCceEEEEeCcCCCCCeEEEeecCCCCC-CCCHHHHHHHHHHHHHc
Q 018287 118 QNEELLFCVTRSEKANS------ELIPS--AAVPNDSILVIINANPIEYGHVFVVPCGSNRL-YPDARSFEMIVRIAFEI 188 (358)
Q Consensus 118 ~~~eclfc~~~~~~~~~------e~~~~--~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~-~lt~~~l~la~~~~~~~ 188 (358)
+--.|.+|.+|..=... .+... ..+.++....--=||.|..-|+.+. ...|.+ .|+...+.-.+++..
T Consensus 170 ~YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl-~~~H~PMkI~~~tF~rLL~fv~-- 246 (493)
T PRK05270 170 SYPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVL-SEKHRPMKISRKTFERLLDFVE-- 246 (493)
T ss_pred CCCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEe-cCccCccEecHHHHHHHHHHHH--
Confidence 34579999987653221 11110 1123666777778899999997655 455555 899885554433322
Q ss_pred CCCceeEeec-----cCCCCcCceeeeeeecCceecccccCCccccc-CCCCceEEEEccCCceeEEEEEEecCCHHHHH
Q 018287 189 NNYSFRLFYD-----CSSPGASHVYFQACYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMM 262 (358)
Q Consensus 189 ~~~gf~vGyN-----sgga~anHLHfh~~yl~~~lPiE~~~~~~l~~-~~~~g~~v~~l~dyP~~~~vf~~~~~~~e~~~ 262 (358)
.-|+|-+|=| -|||+=.|=|||++. +.||+++|+...-+. ....++.. .+.+||+.++.+.+ ++.+.++
T Consensus 247 ~fPhYFiGSNADLPIVGGSILsHdHyQgG~--h~FpM~kA~i~~~f~~~~~p~V~a-givkWPmSviRL~~--~~~~~l~ 321 (493)
T PRK05270 247 QFPHYFIGSNADLPIVGGSILSHDHYQGGR--HTFPMAKAPIEEEFTLAGYPDVKA-GIVKWPMSVIRLTS--KNKDELI 321 (493)
T ss_pred hCCccccccCCCCCcccccccccccccCCC--cccccccCccceEEecCCCCcceE-EEeeCcceEEEeec--CCHHHHH
Confidence 2299999999 488888999999997 999999999875332 11334433 45899999999988 9999999
Q ss_pred HHHHHHHHHhhhcC------------CCceEE--EEe---CCeEEEEEeccCCC-------------------CcCchhc
Q 018287 263 EAISEICSSLREKN------------ISYNLL--ISD---CGKRIFLFLQKSAI-------------------SGNLLAW 306 (358)
Q Consensus 263 ~~~~~~~~~L~~~n------------i~~Nll--~~~---~g~rv~ifPR~~~~-------------------~~npa~~ 306 (358)
++...+.+....-. +|||-+ |.| +.+-+-|+.|..++ -=|.|..
T Consensus 322 ~~a~~Il~~Wr~YsDe~~~I~a~tdg~pHnTITPIaR~~~~~yElDLVLRnN~Tsee~P~GIFHPH~e~hHIKKENIGLI 401 (493)
T PRK05270 322 DAADKILEAWRGYSDESVDILAYTDGTPHNTITPIARRRGGKYELDLVLRNNRTSEEHPDGIFHPHPEVHHIKKENIGLI 401 (493)
T ss_pred HHHHHHHHHHhCCCccccceeecCCCCcccCCCceEEecCCeeEEEEEeecCCCccccCCccccCchhhhccccccccHH
Confidence 99999998766554 667654 122 23677788888732 1346999
Q ss_pred cccceeeecC
Q 018287 307 ECGGYFLFGS 316 (358)
Q Consensus 307 ElaG~lv~~r 316 (358)
|.-|+-|+|-
T Consensus 402 EVMGLAILP~ 411 (493)
T PRK05270 402 EVMGLAILPG 411 (493)
T ss_pred hhhhhhcCcH
Confidence 9999998875
No 13
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=98.31 E-value=1.5e-06 Score=73.40 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=61.5
Q ss_pred CCceeeeecCCCcccccccCCcccC-CCceEEEEeCcCCCCCeEEEeecCCCC-C----CCCHHHHHHHHHHH----HHc
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L----YPDARSFEMIVRIA----FEI 188 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~-~~~~~VliN~~Pi~~gH~LlVP~~~~~-~----~lt~~~l~la~~~~----~~~ 188 (358)
...|+||..-+.+ +|..+++ ++.++...-++|-.+||.|+||..|.. + ..+++.+.-.+..+ +..
T Consensus 15 ~~~tIF~kIi~ke-----IPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~ 89 (127)
T KOG3275|consen 15 AAPTIFCKIIRKE-----IPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKAL 89 (127)
T ss_pred CCCcEeeeeeccc-----CCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHh
Confidence 4689999654321 2333444 788999999999999999999999942 2 55666554444443 333
Q ss_pred -CCCceeEeec--cCCCCc-Cceeeeeee
Q 018287 189 -NNYSFRLFYD--CSSPGA-SHVYFQACY 213 (358)
Q Consensus 189 -~~~gf~vGyN--sgga~a-nHLHfh~~y 213 (358)
-..||||--| .-|+.. .|+|||+.-
T Consensus 90 Gl~~gYrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 90 GLEDGYRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred CcccceeEEEcCCcccceEEEEEEEEEeC
Confidence 3457888888 335554 999999865
No 14
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.27 E-value=2.1e-05 Score=80.50 Aligned_cols=190 Identities=12% Similarity=0.126 Sum_probs=131.0
Q ss_pred CCceeeeecCCCcccccccCC----c----ccCCCceEEEEeCcCCCCCeEEEeecCCCCC-CCCHHHHHHHHHHHHHcC
Q 018287 119 NEELLFCVTRSEKANSELIPS----A----AVPNDSILVIINANPIEYGHVFVVPCGSNRL-YPDARSFEMIVRIAFEIN 189 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~----~----~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~-~lt~~~l~la~~~~~~~~ 189 (358)
--.|++|.+|..=...-..|. . .+.++....--=||.|..-|+.+. ...|.+ .|+...+.-.+++.. .
T Consensus 168 YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl-~~~H~PMkI~~~tF~~Ll~fv~--~ 244 (489)
T TIGR01239 168 YPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVL-KGKHEPMEISKKTFERLLSFLG--K 244 (489)
T ss_pred CCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEe-cCccCCcEecHHHHHHHHHHHH--h
Confidence 347999998765321111110 1 123566677777888999997655 455555 899885554433322 2
Q ss_pred CCceeEeec-----cCCCCcCceeeeeeecCceecccccCCcccccC-CCCceEEEEccCCceeEEEEEEecCCHHHHHH
Q 018287 190 NYSFRLFYD-----CSSPGASHVYFQACYFPDHLPVELMPIDTFFSD-GQRGIYISTLIDYPIKTILFEYTYNNRIIMME 263 (358)
Q Consensus 190 ~~gf~vGyN-----sgga~anHLHfh~~yl~~~lPiE~~~~~~l~~~-~~~g~~v~~l~dyP~~~~vf~~~~~~~e~~~~ 263 (358)
-|+|-+|=| -|||+=.|=|||++. +.||+++|+...-+.. .-.++.. -+.+||+.++.+.+ .+.+.+++
T Consensus 245 fPhYFiGSNADLPIVGGSILsHdHyQgG~--h~FpM~kA~i~~~f~~~~~p~V~a-givkWPmSviRL~~--~~~~~l~~ 319 (489)
T TIGR01239 245 FPHYFIGSNADLPIVGGSILSHDHYQGGR--HDFPMARAEAEEVYELNDYPDVSA-GIVKWPMSVLRLQG--EDPGELAE 319 (489)
T ss_pred CCccccccCCCCCcccccccccccccCCC--cccccccCCcceEEecCCCCcceE-EEEeccceEEEecc--CCHHHHHH
Confidence 299999999 488888999999997 9999999998753321 1234433 35899999999988 88999999
Q ss_pred HHHHHHHHhhhcC------------CCceEE--EEe--C-CeEEEEEeccCCCC-------------------cCchhcc
Q 018287 264 AISEICSSLREKN------------ISYNLL--ISD--C-GKRIFLFLQKSAIS-------------------GNLLAWE 307 (358)
Q Consensus 264 ~~~~~~~~L~~~n------------i~~Nll--~~~--~-g~rv~ifPR~~~~~-------------------~npa~~E 307 (358)
+...+.+....-. +|||-+ |.| + .+-+-|+.|..++. =|.|..|
T Consensus 320 ~a~~Il~~Wr~YsDe~~~I~A~t~g~pHnTITPIaR~~~~~yElDLVLRnN~Tsee~P~GIFHPH~evhHIKKENIGLIE 399 (489)
T TIGR01239 320 AADHIFRTWQTYSDEKAGIAAYSDGTPHHTVTPIARRRDGKYELDLVLRDNQTSEEYPDGIFHPHQDVHHIKKENIGLIE 399 (489)
T ss_pred HHHHHHHHHhCCCccccceEecCCCCccccCCceEEecCCceEEEEEeecCCCccccCCccccCcHhhhhhhhhhhhHHh
Confidence 9999888665443 677654 222 2 36777889987322 2369999
Q ss_pred ccceeeecC
Q 018287 308 CGGYFLFGS 316 (358)
Q Consensus 308 laG~lv~~r 316 (358)
.-|+=|+|-
T Consensus 400 VMGLAILP~ 408 (489)
T TIGR01239 400 VMGLAILPG 408 (489)
T ss_pred hhhhhcCCH
Confidence 999988883
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.21 E-value=2.8e-06 Score=71.93 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=58.9
Q ss_pred eeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecC-CCC-C-CCCHH-------HHHHHHHHHHHcC--
Q 018287 122 LLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCG-SNR-L-YPDAR-------SFEMIVRIAFEIN-- 189 (358)
Q Consensus 122 clfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~-~~~-~-~lt~~-------~l~la~~~~~~~~-- 189 (358)
|+||...+.++.+. .+..++.++++-+.+|-.+.|+|+||.. +.. + .|+.+ |.+.+.+++++..
T Consensus 2 cif~~i~~~~~~~~----vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~ 77 (116)
T PF11969_consen 2 CIFCIIIRGEEPER----VLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPG 77 (116)
T ss_dssp HHHHHHTTSSSGGG----ESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-T
T ss_pred ccceEeEcCCCCCc----EEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78887665544223 1234788999999999999999999999 554 4 78765 4444555555442
Q ss_pred ---CCceeEeeccCCCCcCceeeeeeecCcee
Q 018287 190 ---NYSFRLFYDCSSPGASHVYFQACYFPDHL 218 (358)
Q Consensus 190 ---~~gf~vGyNsgga~anHLHfh~~yl~~~l 218 (358)
...+++||...=+. +|||+|+...+...
T Consensus 78 ~~~~~~~~~gfH~~PS~-~HLHlHvi~~~~~s 108 (116)
T PF11969_consen 78 DLDSDDIRLGFHYPPSV-YHLHLHVISPDFDS 108 (116)
T ss_dssp T-EGGGEEEEEESS-SS-SS-EEEEEETTS--
T ss_pred ccchhhhcccccCCCCc-ceEEEEEccCCCcC
Confidence 45899999955533 89999999854433
No 16
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=97.99 E-value=1.1e-05 Score=80.56 Aligned_cols=92 Identities=7% Similarity=0.011 Sum_probs=59.4
Q ss_pred CCceeeeecCCCccc-ccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHHH----HHHHHH---H-
Q 018287 119 NEELLFCVTRSEKAN-SELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEM----IVRIAF---E- 187 (358)
Q Consensus 119 ~~eclfc~~~~~~~~-~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~l----a~~~~~---~- 187 (358)
...|+||..-..+.. .+. .+..++.+++++..+|..+||+|+||.+|.. + .|+++.+.. +.++++ .
T Consensus 193 ~g~Clfcdii~~E~~~~~R---iV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~ 269 (346)
T PRK11720 193 HGSPLLVDYVQRELADGER---IVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNL 269 (346)
T ss_pred cCCeEHHHHHHhhhhcCCe---EEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999965432211 111 2334788999999999999999999999985 4 888872221 122222 2
Q ss_pred c-CCCceeEeeccC---CC-Cc-Cceeeeeee
Q 018287 188 I-NNYSFRLFYDCS---SP-GA-SHVYFQACY 213 (358)
Q Consensus 188 ~-~~~gf~vGyNsg---ga-~a-nHLHfh~~y 213 (358)
. .+..|++|+|.+ |. .. -|+|+|++.
T Consensus 270 ~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiP 301 (346)
T PRK11720 270 FQCSFPYSMGWHGAPFNGEENDHWQLHAHFYP 301 (346)
T ss_pred hCCCCCCceeEEecccCCCCCeeEEEEEEEeC
Confidence 2 355799999944 22 22 577777765
No 17
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=97.96 E-value=1.3e-05 Score=80.03 Aligned_cols=91 Identities=4% Similarity=0.054 Sum_probs=58.6
Q ss_pred CCceeeeecCCCcc-cccccCCccc-CCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHHH----HHHHHH---H
Q 018287 119 NEELLFCVTRSEKA-NSELIPSAAV-PNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEM----IVRIAF---E 187 (358)
Q Consensus 119 ~~eclfc~~~~~~~-~~e~~~~~~~-~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~l----a~~~~~---~ 187 (358)
...|+||..-..+. ..+ .++ .++.+++++..+|+.+||+|+||.+|.. + .|+++.+.. +.++++ .
T Consensus 193 ~g~clfcdIi~~E~~~~~----riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~ 268 (347)
T TIGR00209 193 HKSPMLVDYVKRELADKS----RTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDN 268 (347)
T ss_pred cCCccHHHHHHhHhhcCC----eEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45799996433221 111 233 4889999999999999999999999995 4 888862222 112222 2
Q ss_pred -c-CCCceeEeeccC---CCCcCc--eeeeeee
Q 018287 188 -I-NNYSFRLFYDCS---SPGASH--VYFQACY 213 (358)
Q Consensus 188 -~-~~~gf~vGyNsg---ga~anH--LHfh~~y 213 (358)
. .+++||+|+|.+ |...+| +|+|++.
T Consensus 269 ~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiP 301 (347)
T TIGR00209 269 LFETSFPYSMGWHGAPFNGEENQHWQLHAHFYP 301 (347)
T ss_pred HhCCCCCcceeEEecccCCCCCcEEEEEEEEeC
Confidence 2 456899999933 222355 6666654
No 18
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=97.82 E-value=7.1e-05 Score=65.05 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=54.1
Q ss_pred CCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHH-------HHHHHHHHHHHc-CCCceeEeeccC---CCCcCceeee
Q 018287 144 NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDAR-------SFEMIVRIAFEI-NNYSFRLFYDCS---SPGASHVYFQ 210 (358)
Q Consensus 144 ~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~-------~l~la~~~~~~~-~~~gf~vGyNsg---ga~anHLHfh 210 (358)
..++++++|.=|+.|||+|++|.|... + .||++ .++.+.++++.. +...++|+.-=| |--.-|+|+|
T Consensus 23 T~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvH 102 (150)
T KOG3379|consen 23 TKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVH 102 (150)
T ss_pred ccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEE
Confidence 467899999999999999999999763 4 88765 445566666665 677899999832 3224899999
Q ss_pred eee
Q 018287 211 ACY 213 (358)
Q Consensus 211 ~~y 213 (358)
+..
T Consensus 103 IlP 105 (150)
T KOG3379|consen 103 ILP 105 (150)
T ss_pred Ecc
Confidence 987
No 19
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00036 Score=70.05 Aligned_cols=190 Identities=15% Similarity=0.206 Sum_probs=127.1
Q ss_pred CceeeeecCCCcccccccCC--------cccCCCceEEEEeCcCCCCCeEEEeecCCCCC-CCCHHHHHHHHHHHHHcCC
Q 018287 120 EELLFCVTRSEKANSELIPS--------AAVPNDSILVIINANPIEYGHVFVVPCGSNRL-YPDARSFEMIVRIAFEINN 190 (358)
Q Consensus 120 ~eclfc~~~~~~~~~e~~~~--------~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~-~lt~~~l~la~~~~~~~~~ 190 (358)
-.|++|.+|..-...-+.|. ..+.++....-.-||-|.+-|+. +=...|.+ .|+...++-.+.++- .-
T Consensus 174 PkClLC~ENeGf~G~vNhPARqNhRIIp~~l~~e~W~fQySPY~YynEH~I-~l~~eH~pM~Is~~tFerlL~f~d--qf 250 (503)
T COG4468 174 PKCLLCKENEGFYGRVNHPARQNHRIIPVELNGEQWGFQYSPYVYYNEHCI-ILNGEHRPMKISRKTFERLLSFLD--QF 250 (503)
T ss_pred cceeeeecccccccccCCcccccceeEEEEecCceeeEeeccceeecceeE-EecCCcccceecHHHHHHHHHHHH--hC
Confidence 46999988754221111110 11224555666667788888965 45556666 888886655444322 23
Q ss_pred CceeEeec-----cCCCCcCceeeeeeecCceecccccCCccccc-CCCCceEEEEccCCceeEEEEEEecCCHHHHHHH
Q 018287 191 YSFRLFYD-----CSSPGASHVYFQACYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEA 264 (358)
Q Consensus 191 ~gf~vGyN-----sgga~anHLHfh~~yl~~~lPiE~~~~~~l~~-~~~~g~~v~~l~dyP~~~~vf~~~~~~~e~~~~~ 264 (358)
|++-+|=| .||++-.|=|||++. +.||+++++.+.-+. ..-.++.. -+..||...+.+++ .+..+++++
T Consensus 251 PhYfiGSNADLPIVGGSILsHDHyQgG~--h~FpMakA~~eke~~~~~fp~V~a-GiVKWPMSVlRL~s--~nk~~L~~l 325 (503)
T COG4468 251 PHYFIGSNADLPIVGGSILSHDHYQGGR--HEFPMAKAELEKEFSFKGFPDVSA-GIVKWPMSVLRLQS--KNKVELIKL 325 (503)
T ss_pred CcccccCCCCCCcccceecccccccccc--ccccccccchhheeeecCCCcccc-ceeecchhheeecc--CCHHHHHHH
Confidence 89999999 588888999999997 999999999876332 11223322 24789999999998 899999999
Q ss_pred HHHHHHHhhhc------------CCCceEEE--E--eCC-eEEEEEeccCCCC-------------------cCchhccc
Q 018287 265 ISEICSSLREK------------NISYNLLI--S--DCG-KRIFLFLQKSAIS-------------------GNLLAWEC 308 (358)
Q Consensus 265 ~~~~~~~L~~~------------ni~~Nll~--~--~~g-~rv~ifPR~~~~~-------------------~npa~~El 308 (358)
..+++...+.- ..|||-+- + |+| +-.=|.-|-.+++ =|.|..|.
T Consensus 326 Ad~il~~Wr~YSDe~~~I~a~T~dtpHnTITPIARkR~~~yELDlVLRnNrT~e~yPdGIFHPH~evhhIKKENIGLIEV 405 (503)
T COG4468 326 ADKILKKWREYSDEEVQILAYTGDTPHNTITPIARKRGGLYELDLVLRNNRTSEEYPDGIFHPHQEVHHIKKENIGLIEV 405 (503)
T ss_pred HHHHHHHHHHhcchhcceeeccCCCCCcccchhhhhcCCeeEEEEEEecCCccccCCCcccCCcHHhhhhhhhccchhee
Confidence 88888866543 35677542 1 344 4455666766322 23699999
Q ss_pred cceeeecCh
Q 018287 309 GGYFLFGSK 317 (358)
Q Consensus 309 aG~lv~~r~ 317 (358)
-|+-|+|-+
T Consensus 406 MGLAiLP~R 414 (503)
T COG4468 406 MGLAILPGR 414 (503)
T ss_pred echhhCChh
Confidence 999888753
No 20
>PLN02643 ADP-glucose phosphorylase
Probab=97.64 E-value=0.00012 Score=72.85 Aligned_cols=88 Identities=8% Similarity=0.101 Sum_probs=58.0
Q ss_pred CCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHHH---HHH-HHH----Hc
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEM---IVR-IAF----EI 188 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~l---a~~-~~~----~~ 188 (358)
...|+||..-.. |. .+..++.+++++..+|..+||++++|.+|.. + .|+++.... +++ +++ ..
T Consensus 197 ~g~Clfcdii~~----E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~ 269 (336)
T PLN02643 197 TGKCSLCEVVKK----DL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQL 269 (336)
T ss_pred hCCCcHHHHHhC----cc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 457999965432 21 1334788999999999999999999999985 4 888862221 121 222 23
Q ss_pred CCCceeEeeccCC---CC--cCceeeeeee
Q 018287 189 NNYSFRLFYDCSS---PG--ASHVYFQACY 213 (358)
Q Consensus 189 ~~~gf~vGyNsgg---a~--anHLHfh~~y 213 (358)
+.++||++.|.+- +. ..|.|+|+-.
T Consensus 270 ~~~pyN~~~~~~P~~~~~~~~~~~H~hihi 299 (336)
T PLN02643 270 NDPPYNYMIQTSPLGVEESNLPYTHWFLQI 299 (336)
T ss_pred CCCCceeeeecCCCccccCcccceEEEEEE
Confidence 6669999999542 11 2566664433
No 21
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=97.64 E-value=0.00039 Score=59.58 Aligned_cols=91 Identities=20% Similarity=0.373 Sum_probs=62.0
Q ss_pred CCCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHH------HHHHHHHHcC
Q 018287 118 QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFE------MIVRIAFEIN 189 (358)
Q Consensus 118 ~~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~------la~~~~~~~~ 189 (358)
..++|.||..+..-+ ...+ +.-|+.+++.+-.-|+.+||+|+||-.|.. . .++++..+ .++.-+..+.
T Consensus 9 ~~~~C~fCl~n~~~~-khli---isiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~ 84 (121)
T PF04677_consen 9 APDNCWFCLSNPNVE-KHLI---ISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQ 84 (121)
T ss_pred CCCCCCCccCCCCcc-ceEE---EEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 577899999765433 2221 223788899999999999999999999995 4 88877333 2344344445
Q ss_pred CCceeEeec-cCCCCcCceeeeeeec
Q 018287 190 NYSFRLFYD-CSSPGASHVYFQACYF 214 (358)
Q Consensus 190 ~~gf~vGyN-sgga~anHLHfh~~yl 214 (358)
+.+. |+|= + ....-|+|.|++.+
T Consensus 85 ~~~v-vf~E~~-~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 85 GKDV-VFFERV-RKRNPHTHIQCVPV 108 (121)
T ss_pred CCCE-EEEEEe-CCCCcEEEEEEEEc
Confidence 5555 5554 4 22236999999883
No 22
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.59 E-value=0.00011 Score=72.73 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCceeeeecCCCccc-ccccCCccc-CCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHH-------HHHHHHHH
Q 018287 119 NEELLFCVTRSEKAN-SELIPSAAV-PNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFE-------MIVRIAFE 187 (358)
Q Consensus 119 ~~eclfc~~~~~~~~-~e~~~~~~~-~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~-------la~~~~~~ 187 (358)
...|+||..-..+.. .+ .++ .++.+++++=..|..|||+++||.+|.. + .|+++... .+++.+..
T Consensus 183 ~g~clfcdii~~E~~~~~----riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~ 258 (329)
T cd00608 183 HGRCLLCDYLKLELESKE----RIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDN 258 (329)
T ss_pred cCCccHHHHHHhhhhcCC----eEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999964322111 11 233 3677888888889999999999999985 4 88886222 12222222
Q ss_pred c-C-CCceeEeeccC---C---CCc-Cceeeeeee
Q 018287 188 I-N-NYSFRLFYDCS---S---PGA-SHVYFQACY 213 (358)
Q Consensus 188 ~-~-~~gf~vGyNsg---g---a~a-nHLHfh~~y 213 (358)
. + +.+|++|+|++ + +.. -|+|+|++.
T Consensus 259 ~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P 293 (329)
T cd00608 259 LFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPP 293 (329)
T ss_pred HhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCC
Confidence 2 4 67999999843 1 112 588888776
No 23
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=97.55 E-value=0.00012 Score=55.67 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=52.5
Q ss_pred CceEEEEeCCeEEEEEeccC--C-CCcCchhccccceeeecChHHHhhcCHHHHHHHHHhccCC
Q 018287 278 SYNLLISDCGKRIFLFLQKS--A-ISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLN 338 (358)
Q Consensus 278 ~~Nll~~~~g~rv~ifPR~~--~-~~~npa~~ElaG~lv~~r~eDFe~lTee~~~~il~evsls 338 (358)
|||+++|++ -++|+||+. - .++..=++=++|.+-++++++.+.+.+.--.++|++|+++
T Consensus 1 ~yNll~T~~--wm~lvPR~~~~~~~~i~~Nalg~~G~llvk~~~~~~~~~~~gp~~iL~~vg~P 62 (62)
T PF09830_consen 1 SYNLLMTRR--WMMLVPRSREGFSGGISVNALGFAGMLLVKSEEELDWLKEDGPMKILREVGFP 62 (62)
T ss_pred CceEEEecC--eEEEEeccccccCCceeechhhheeeeeeCCHHHHHHHHHcCHHHHHHHhcCC
Confidence 699999986 788999999 3 5566777888999999999999999999999999999875
No 24
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=97.10 E-value=0.0022 Score=56.14 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCceeeeecCCCc-ccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHH-------HHHHHHHHHHHc
Q 018287 119 NEELLFCVTRSEK-ANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDAR-------SFEMIVRIAFEI 188 (358)
Q Consensus 119 ~~eclfc~~~~~~-~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~-------~l~la~~~~~~~ 188 (358)
.+.|+||...... ...+.+ ...++.++++=..+|-..-|.|+||..|.. + .|+.+ +....+.++++.
T Consensus 30 ~~~C~FCDia~r~~~~~ell---~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~ 106 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELL---HCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERN 106 (166)
T ss_pred CCceEEEEeecccCCCCcee---EecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHh
Confidence 4579999665432 222321 123677777778999999999999999985 4 77765 222344455554
Q ss_pred ---CCCceeEeeccCCCCc-Cceeeeeee
Q 018287 189 ---NNYSFRLFYDCSSPGA-SHVYFQACY 213 (358)
Q Consensus 189 ---~~~gf~vGyNsgga~a-nHLHfh~~y 213 (358)
.....||||--.--.. .|||+|+.|
T Consensus 107 ~~td~~~~r~GFHLPPf~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 107 NFTDFTNVRMGFHLPPFCSVSHLHLHVIA 135 (166)
T ss_pred ccCCchheeEeccCCCcceeeeeeEeeec
Confidence 4558899999543333 899999998
No 25
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0016 Score=66.76 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=61.4
Q ss_pred CCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHHHHHHHHHHcCCCceeEe
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFEINNYSFRLF 196 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~la~~~~~~~~~~gf~vG 196 (358)
+.+|.||..+-.-+ ... .+..|.++++.+=.=|+..||+|+||-.|.. . .++++......++- .++|-+
T Consensus 318 pg~CwFCLSnP~vE-kHL---IVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kyk-----aal~~m 388 (528)
T KOG2476|consen 318 PGSCWFCLSNPNVE-KHL---IVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYK-----AALRKM 388 (528)
T ss_pred CCceEEEecCCChh-hhe---EEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHH-----HHHHHH
Confidence 45799999765444 222 1234889999999999999999999999995 4 88887666554442 345556
Q ss_pred eccCCCCc----------Cceeeeeee
Q 018287 197 YDCSSPGA----------SHVYFQACY 213 (358)
Q Consensus 197 yNsgga~a----------nHLHfh~~y 213 (358)
||+-|..+ -|||+|++.
T Consensus 389 yk~~g~~~vvfE~~~~rs~Hlq~Qvip 415 (528)
T KOG2476|consen 389 YKKQGKDAVVFERQSYRSVHLQLQVIP 415 (528)
T ss_pred HHhcCCeEEEEEeecccceeeEEEEEe
Confidence 77544432 588888876
No 26
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.46 E-value=0.3 Score=48.42 Aligned_cols=221 Identities=14% Similarity=0.159 Sum_probs=118.1
Q ss_pred EcCccccCccCCccc-----c-CCCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCC-----------------
Q 018287 102 LNEKWIMDPFILNSI-----D-QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEY----------------- 158 (358)
Q Consensus 102 lNp~R~~~~~kfnf~-----k-~~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~----------------- 158 (358)
..|+|...+.++.-. . ..+.|-||..+.... .+ ....+-.+.|+-|.||...
T Consensus 14 ~a~~R~~Rp~~~~~~~~~~~~~~~~~CPfCpg~~~~~-~~----~~~~~w~~~v~~N~fPal~~~~~~~~~~~~~l~~~~ 88 (329)
T cd00608 14 VSPHRAKRPWQGQQEAPKKLPEYDPDCPLCPGNERAD-TG----EQNPDYDVRVFENDFPALKPDAPAPEDSDDGLFRTA 88 (329)
T ss_pred EcCcccCCCCCCcccccccccCCCCCCCcCCCCCCCC-CC----CCCCCCeEEEECCCCccccCCCCCCcccCCcccccC
Confidence 567777766544211 1 225699997664320 00 1112344899999999883
Q ss_pred ----CeEEEeecCCCC--C-CCCHHHHHHHH----HHHHH-cC---CCceeEeeccC--CCCc-CceeeeeeecCceecc
Q 018287 159 ----GHVFVVPCGSNR--L-YPDARSFEMIV----RIAFE-IN---NYSFRLFYDCS--SPGA-SHVYFQACYFPDHLPV 220 (358)
Q Consensus 159 ----gH~LlVP~~~~~--~-~lt~~~l~la~----~~~~~-~~---~~gf~vGyNsg--ga~a-nHLHfh~~yl~~~lPi 220 (358)
.|-.+|=...|. + .++.+-+..++ +.+.+ .+ -.+.-+|-|.| +|+. .|-|-|++-++. +|-
T Consensus 89 ~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~~-vp~ 167 (329)
T cd00608 89 PARGRCEVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALPF-LPP 167 (329)
T ss_pred CcceeEEEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCCc-CCh
Confidence 244445455553 3 77776333322 22222 22 33677899943 2222 799999998442 222
Q ss_pred cccCC----c------------cccc-C-CCCceEEEE-------c---cCCceeEEEEEEe---------cCCHHHHHH
Q 018287 221 ELMPI----D------------TFFS-D-GQRGIYIST-------L---IDYPIKTILFEYT---------YNNRIIMME 263 (358)
Q Consensus 221 E~~~~----~------------~l~~-~-~~~g~~v~~-------l---~dyP~~~~vf~~~---------~~~~e~~~~ 263 (358)
+-+.. + .+.. . ..+...|++ + .-||-..+++--. .....+++.
T Consensus 168 ~~~~e~~~~~~y~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~ 247 (329)
T cd00608 168 EVARELRNQKAYYEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAE 247 (329)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHH
Confidence 11100 0 0110 0 011112222 2 3345555555321 013456777
Q ss_pred HHHHHHHHhhh---cCCCceEEEEe----C---C-----eEEEEEeccC-CCCcCchhccccc-eeeecChHHHhhcCHH
Q 018287 264 AISEICSSLRE---KNISYNLLISD----C---G-----KRIFLFLQKS-AISGNLLAWECGG-YFLFGSKYEFDQVTEE 326 (358)
Q Consensus 264 ~~~~~~~~L~~---~ni~~Nll~~~----~---g-----~rv~ifPR~~-~~~~npa~~ElaG-~lv~~r~eDFe~lTee 326 (358)
++.++...|.. ...+||+.+-. + + +.+.|+||.. ..--+.|..||++ ..+ ..++.|
T Consensus 248 ~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aGfE~~~g~~i-------n~~~PE 320 (329)
T cd00608 248 ILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAGFELGAGEFI-------NDVTPE 320 (329)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEEeeccCCCcc-------CCCCHH
Confidence 77777765533 25689999842 1 1 6788999977 2223356677764 444 357888
Q ss_pred HHHHHHHhc
Q 018287 327 AIHKRLSAV 335 (358)
Q Consensus 327 ~~~~il~ev 335 (358)
++.+.|+++
T Consensus 321 ~aA~~LR~~ 329 (329)
T cd00608 321 QAAARLREV 329 (329)
T ss_pred HHHHHHhcC
Confidence 888888864
No 27
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.43 E-value=0.058 Score=53.85 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHH---HHhhhcCCCceEEEEe--CC-------eEEEEEeccC---CCCcCchhccccceeeecChHHHhh
Q 018287 258 RIIMMEAISEIC---SSLREKNISYNLLISD--CG-------KRIFLFLQKS---AISGNLLAWECGGYFLFGSKYEFDQ 322 (358)
Q Consensus 258 ~e~~~~~~~~~~---~~L~~~ni~~Nll~~~--~g-------~rv~ifPR~~---~~~~npa~~ElaG~lv~~r~eDFe~ 322 (358)
..+++..+..+. +.+..+..|||+++.. .+ +-+-++|+.. -..++.+..||.+-... ..
T Consensus 243 ~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~------~~ 316 (338)
T COG1085 243 LKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFI------RD 316 (338)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceee------cc
Confidence 344555555544 4556778889999874 11 4666788444 44567788888873222 35
Q ss_pred cCHHHHHHHHHhccC
Q 018287 323 VTEEAIHKRLSAVSL 337 (358)
Q Consensus 323 lTee~~~~il~evsl 337 (358)
.|+|+|.+.|++++.
T Consensus 317 ~~pEeaA~~LR~~~~ 331 (338)
T COG1085 317 VTPEEAAERLRERSA 331 (338)
T ss_pred CCHHHHHHHHHHhhh
Confidence 789999999998763
No 28
>PLN02643 ADP-glucose phosphorylase
Probab=95.65 E-value=1.7 Score=43.41 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=119.0
Q ss_pred EcCccccCccCCcc-----c--cCCCceeeeecCCCcccccccCCc---ccCCCceEEEEeCcCCCCC------------
Q 018287 102 LNEKWIMDPFILNS-----I--DQNEELLFCVTRSEKANSELIPSA---AVPNDSILVIINANPIEYG------------ 159 (358)
Q Consensus 102 lNp~R~~~~~kfnf-----~--k~~~eclfc~~~~~~~~~e~~~~~---~~~~~~~~VliN~~Pi~~g------------ 159 (358)
..|.|...+.++.- . ...+.|-||..+......+.+... ...+=.+.|+-|.||....
T Consensus 16 ia~~R~~RP~~~~~~~~~~~~~~~~~~CPfCpgne~~t~~ei~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~~ 95 (336)
T PLN02643 16 FSPARGKRPTDFKSKSPQNPNGNHSSGCPFCIGHEHECAPEIFRVPDDASAPDWKVRVIENLYPALSRDLEPPCTEGQGE 95 (336)
T ss_pred EcCCcccCCCCCcccCCcCCCCCCCCCCCCCCCCCCCCCcceeeccCCCCCCCCeEEEEeCCCccccCCCCCCcccccCc
Confidence 56778777654321 1 112459999876543323321000 0112247899999997631
Q ss_pred ------------eEEEeecCCCC--C-CCCHHHHHHHHHHHH----H-cCC---CceeEeec----cCCCCcCceeeeee
Q 018287 160 ------------HVFVVPCGSNR--L-YPDARSFEMIVRIAF----E-INN---YSFRLFYD----CSSPGASHVYFQAC 212 (358)
Q Consensus 160 ------------H~LlVP~~~~~--~-~lt~~~l~la~~~~~----~-~~~---~gf~vGyN----sgga~anHLHfh~~ 212 (358)
|-.+|-...|. + .|+.+-+..++.+.+ . .++ .+.-+|-| +|++. .|-|-|++
T Consensus 96 ~~~~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl-~HPH~Qi~ 174 (336)
T PLN02643 96 DYGGRRLPGFGFHDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASM-SHSHSQII 174 (336)
T ss_pred chhhcccceeeEEEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCC-CCCceeeE
Confidence 44444444443 3 777664443333222 2 233 37789999 23333 79999999
Q ss_pred ecCceecccccCC----c--------ccccC-CCCceEEEE------ccC----CceeEEEEEEe---------cCCHHH
Q 018287 213 YFPDHLPVELMPI----D--------TFFSD-GQRGIYIST------LID----YPIKTILFEYT---------YNNRII 260 (358)
Q Consensus 213 yl~~~lPiE~~~~----~--------~l~~~-~~~g~~v~~------l~d----yP~~~~vf~~~---------~~~~e~ 260 (358)
-++. +|-+-... + .++-+ ......|++ +.+ ||...+++--. .....+
T Consensus 175 a~~~-vP~~~~~el~~~~~y~~~~g~Clfcdii~~E~iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~ 253 (336)
T PLN02643 175 ALPV-VPPSVSARLDGSKEYFEKTGKCSLCEVVKKDLLIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVD 253 (336)
T ss_pred ecCc-CChHHHHHHHHHHHHHHHhCCCcHHHHHhCccEEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHH
Confidence 8442 22211110 0 01100 000101222 222 35555544321 123456
Q ss_pred HHHHHHHHHHHhhh--cCCCceEEEEeC-----C-------eEEEEEeccCCCCcCchhcccc-ceeeecChHHHhhcCH
Q 018287 261 MMEAISEICSSLRE--KNISYNLLISDC-----G-------KRIFLFLQKSAISGNLLAWECG-GYFLFGSKYEFDQVTE 325 (358)
Q Consensus 261 ~~~~~~~~~~~L~~--~ni~~Nll~~~~-----g-------~rv~ifPR~~~~~~npa~~Ela-G~lv~~r~eDFe~lTe 325 (358)
+++.+.++...|.. +..+||+.+-.. + |.+-|+||-+. .|-.||+ |..+- .+|.
T Consensus 254 La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~----~aGfElg~g~~in-------~~~P 322 (336)
T PLN02643 254 LGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSG----VGGFELGTGCYIN-------PVFP 322 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecCcCC----ccceeccCCCeeC-------CCCH
Confidence 77777766665532 234899987631 1 45789999752 3455875 54554 4899
Q ss_pred HHHHHHHHhccCC
Q 018287 326 EAIHKRLSAVSLN 338 (358)
Q Consensus 326 e~~~~il~evsls 338 (358)
|++.+.|+++.|.
T Consensus 323 E~aA~~LR~~~~~ 335 (336)
T PLN02643 323 EDAAKVLREVNLP 335 (336)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999998874
No 29
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=95.41 E-value=1.5 Score=44.04 Aligned_cols=222 Identities=12% Similarity=0.086 Sum_probs=122.6
Q ss_pred EcCccccCccCCccc-------c-CCCceeeeecCCCcccccccCCcccCCC-ceEEEEeCcCCCC--------C-----
Q 018287 102 LNEKWIMDPFILNSI-------D-QNEELLFCVTRSEKANSELIPSAAVPND-SILVIINANPIEY--------G----- 159 (358)
Q Consensus 102 lNp~R~~~~~kfnf~-------k-~~~eclfc~~~~~~~~~e~~~~~~~~~~-~~~VliN~~Pi~~--------g----- 159 (358)
..++|...+.++... . ..+.|-||..+..... +. ..+= ...|+-|.||... +
T Consensus 24 ia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~t~-~~-----~~~w~~~rv~~N~fPal~~~~~~~~~~~~~l~ 97 (346)
T PRK11720 24 VSPHRAKRPWQGQQETPAKETLPAYDPDCFLCPGNTRVTG-DV-----NPDYTGTYVFTNDFAALMPDTPDAPESDDPLF 97 (346)
T ss_pred EcCCccCCCCCCcccCCccccCCCCCCCCCCCCCCCCCCC-CC-----CCCCCEEEEEcCCCchhccCCCCCCcccCccc
Confidence 567777776543211 1 1256999987643221 10 0111 2568999999874 2
Q ss_pred --------eEEEeecCCC--CC-CCCHHHHHHHHHHHHH----c--CCCceeEeeccC--CCCc-CceeeeeeecCceec
Q 018287 160 --------HVFVVPCGSN--RL-YPDARSFEMIVRIAFE----I--NNYSFRLFYDCS--SPGA-SHVYFQACYFPDHLP 219 (358)
Q Consensus 160 --------H~LlVP~~~~--~~-~lt~~~l~la~~~~~~----~--~~~gf~vGyNsg--ga~a-nHLHfh~~yl~~~lP 219 (358)
|-.+|=...| .+ .|+.+-+..++.+.++ . .-.+.-+|=|-| +|+. .|=|-|++-++..-|
T Consensus 98 ~~~~~~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~ 177 (346)
T PRK11720 98 RCQSARGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPN 177 (346)
T ss_pred ccCccceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeeeCCCCCh
Confidence 5444444444 34 7787744443333222 2 255788899933 2222 899999998553222
Q ss_pred ccccCC-----------c----cccc-C-CCCceEEEEc------cC----CceeEEEEEEe---------cCCHHHHHH
Q 018287 220 VELMPI-----------D----TFFS-D-GQRGIYISTL------ID----YPIKTILFEYT---------YNNRIIMME 263 (358)
Q Consensus 220 iE~~~~-----------~----~l~~-~-~~~g~~v~~l------~d----yP~~~~vf~~~---------~~~~e~~~~ 263 (358)
...... + .|.. . ..+...|++- .+ ||-..+++--. .....+++.
T Consensus 178 ~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~ 257 (346)
T PRK11720 178 EAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLAL 257 (346)
T ss_pred HHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHH
Confidence 211110 0 0111 0 0111223332 22 45555544321 123456667
Q ss_pred HHHHHHHHhh---hcCCCceEEEEeC-----C-----eEEEEEeccCCCC---cCchhccccceeeecChHHHhhcCHHH
Q 018287 264 AISEICSSLR---EKNISYNLLISDC-----G-----KRIFLFLQKSAIS---GNLLAWECGGYFLFGSKYEFDQVTEEA 327 (358)
Q Consensus 264 ~~~~~~~~L~---~~ni~~Nll~~~~-----g-----~rv~ifPR~~~~~---~npa~~ElaG~lv~~r~eDFe~lTee~ 327 (358)
++.++...|. ..+.|||+.+-.. + +.+-|+||-.|.+ =+.|.+||+|..+-+ +|.|+
T Consensus 258 ~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aGfE~~g~~in~-------~~PE~ 330 (346)
T PRK11720 258 ALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRD-------LTAEQ 330 (346)
T ss_pred HHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceeeeecccCccCC-------CCHHH
Confidence 7777776663 3566799986531 1 5677999965322 247889999988764 89999
Q ss_pred HHHHHHhcc
Q 018287 328 IHKRLSAVS 336 (358)
Q Consensus 328 ~~~il~evs 336 (358)
+.+.|++++
T Consensus 331 aA~~LR~~~ 339 (346)
T PRK11720 331 AAERLRAVS 339 (346)
T ss_pred HHHHHhhcc
Confidence 999999973
No 30
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=94.97 E-value=2.6 Score=42.34 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=123.2
Q ss_pred EcCccccCccCCccc-----c---CCCceeeeecCCCcccccccCCcccCC-CceEEEEeCcCCCC--------C-----
Q 018287 102 LNEKWIMDPFILNSI-----D---QNEELLFCVTRSEKANSELIPSAAVPN-DSILVIINANPIEY--------G----- 159 (358)
Q Consensus 102 lNp~R~~~~~kfnf~-----k---~~~eclfc~~~~~~~~~e~~~~~~~~~-~~~~VliN~~Pi~~--------g----- 159 (358)
..++|...+.++... . ....|-||..+.... .+ +..+ +...|+-|.||... +
T Consensus 24 ia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~~-~~-----~~~~w~~~rV~~N~fPal~~~~~~~~~~~~~l~ 97 (347)
T TIGR00209 24 VSPHRAKRPWQGQQETPAKQVLPAYDPDCYLCPGNKRVT-GD-----LNPDYTGTYVFTNDFAALMSDTPDAPESHDPLM 97 (347)
T ss_pred EeCCcccCCCCccccccccccCCCCCCCCCCCCCCCCCC-CC-----cCCCCceEEEEeCCCcccccCCCCCCcCCCccc
Confidence 567787776544321 1 123599998764432 11 1111 23669999999874 2
Q ss_pred --------eEEEeecCCC--CC-CCCHHHHHHHHHHHH-----Hc-CCCceeEeeccC--CCCc-CceeeeeeecCceec
Q 018287 160 --------HVFVVPCGSN--RL-YPDARSFEMIVRIAF-----EI-NNYSFRLFYDCS--SPGA-SHVYFQACYFPDHLP 219 (358)
Q Consensus 160 --------H~LlVP~~~~--~~-~lt~~~l~la~~~~~-----~~-~~~gf~vGyNsg--ga~a-nHLHfh~~yl~~~lP 219 (358)
|=.+|=...| .+ .|+.+-+...+.+.+ .. +-.+.-+|=|-| +|+. .|=|-|++-++..=|
T Consensus 98 ~~~~~~G~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~ 177 (347)
T TIGR00209 98 RCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWANSFLPN 177 (347)
T ss_pred ccCCCCeeEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeeeCCCCCh
Confidence 4334433444 34 777764443332222 12 345788889933 2222 899999998543222
Q ss_pred ccccCC-----------c----cccc-CC-CCceEEEEc------cC----CceeEEEEEEe---------cCCHHHHHH
Q 018287 220 VELMPI-----------D----TFFS-DG-QRGIYISTL------ID----YPIKTILFEYT---------YNNRIIMME 263 (358)
Q Consensus 220 iE~~~~-----------~----~l~~-~~-~~g~~v~~l------~d----yP~~~~vf~~~---------~~~~e~~~~ 263 (358)
.-.... + .+.. .. .+...|++- .+ +|-..+++--. .....+++.
T Consensus 178 ~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~ 257 (347)
T TIGR00209 178 EVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLAL 257 (347)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHH
Confidence 211111 0 0111 00 111223322 22 34455443221 123456666
Q ss_pred HHHHHHHHhh---hcCCCceEEEEe---CC-------eEEEEEeccCCCC--c-CchhccccceeeecChHHHhhcCHHH
Q 018287 264 AISEICSSLR---EKNISYNLLISD---CG-------KRIFLFLQKSAIS--G-NLLAWECGGYFLFGSKYEFDQVTEEA 327 (358)
Q Consensus 264 ~~~~~~~~L~---~~ni~~Nll~~~---~g-------~rv~ifPR~~~~~--~-npa~~ElaG~lv~~r~eDFe~lTee~ 327 (358)
++.++...|. ..+.|||+.+-. +| +-+-|+||-.|.. - +.|.+||.|..+-+ +|.|+
T Consensus 258 ~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~~g~~in~-------~~PE~ 330 (347)
T TIGR00209 258 ILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLGETQRD-------LTAEQ 330 (347)
T ss_pred HHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhhhcCccCC-------CCHHH
Confidence 7777766653 345689998763 11 5777999966333 2 47899999988864 89999
Q ss_pred HHHHHHhcc
Q 018287 328 IHKRLSAVS 336 (358)
Q Consensus 328 ~~~il~evs 336 (358)
+.+.|++++
T Consensus 331 aA~~LR~~~ 339 (347)
T TIGR00209 331 AAERLRALS 339 (347)
T ss_pred HHHHHHhcc
Confidence 999999984
No 31
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=90.52 E-value=0.31 Score=44.09 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=48.0
Q ss_pred CceEEEEeCcCCCCCeEEEeecCCCCC---CCCHHHHHH-----------HHHHHHHcCCCceeEeeccCCCCcCceeee
Q 018287 145 DSILVIINANPIEYGHVFVVPCGSNRL---YPDARSFEM-----------IVRIAFEINNYSFRLFYDCSSPGASHVYFQ 210 (358)
Q Consensus 145 ~~~~VliN~~Pi~~gH~LlVP~~~~~~---~lt~~~l~l-----------a~~~~~~~~~~gf~vGyNsgga~anHLHfh 210 (358)
+.++||=-.||=...|+|+.|++..-. ..-++-+.+ ...+.-+...-.|||||-|+-+. +|||+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~HavPSM-~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHAVPSM-NNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeeccCcch-hheeEE
Confidence 456777789999999999999755422 222221111 11222223355899999966555 789999
Q ss_pred eeecCceecc
Q 018287 211 ACYFPDHLPV 220 (358)
Q Consensus 211 ~~yl~~~lPi 220 (358)
+...+...|-
T Consensus 102 VISkDf~S~s 111 (184)
T KOG0562|consen 102 VISKDFVSPS 111 (184)
T ss_pred EeecccCCch
Confidence 9985554443
No 32
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.78 E-value=17 Score=38.52 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHH------HHHHHHHHHHHcCC
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDAR------SFEMIVRIAFEINN 190 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~------~l~la~~~~~~~~~ 190 (358)
.+.|.+|+....-..+-++ .+....++.|.=-=|+..|||++||..|.. - .++.+ -+..|+.+|-.+.+
T Consensus 406 lD~C~rCfds~klpkhlvi---Slg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n 482 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVI---SLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMN 482 (628)
T ss_pred hhhchhhhcccccccceeE---EeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 4579999875432211211 122344555555567999999999998883 3 77775 45567777766666
Q ss_pred CceeEeeccCCCCc-Cceeeeeee
Q 018287 191 YSFRLFYDCSSPGA-SHVYFQACY 213 (358)
Q Consensus 191 ~gf~vGyNsgga~a-nHLHfh~~y 213 (358)
.+.-..=|+.+-.- -|+-.|++.
T Consensus 483 ~dviFyE~a~~l~rrpH~~IeCIP 506 (628)
T KOG2477|consen 483 LDVIFYENAPSLQRRPHTAIECIP 506 (628)
T ss_pred CCeEEEeccCccccCCceeEEEee
Confidence 66544444332221 455555544
No 33
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=66.50 E-value=11 Score=35.65 Aligned_cols=69 Identities=6% Similarity=0.041 Sum_probs=39.4
Q ss_pred eEEEEeCcCCCCCeEEEeecCCCC----C-CCC---HHHHHHHH---HHHHH-----cCCCceeEeeccCCCCc-Cceee
Q 018287 147 ILVIINANPIEYGHVFVVPCGSNR----L-YPD---ARSFEMIV---RIAFE-----INNYSFRLFYDCSSPGA-SHVYF 209 (358)
Q Consensus 147 ~~VliN~~Pi~~gH~LlVP~~~~~----~-~lt---~~~l~la~---~~~~~-----~~~~gf~vGyNsgga~a-nHLHf 209 (358)
-+|++. -|..+-|.|+||..... + .++ ++.+..|+ .++.. ..+..+-++.||-.|=- ||||.
T Consensus 34 gyvvlK-d~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gRsQdQLHI 112 (222)
T PF02611_consen 34 GYVVLK-DRNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGRSQDQLHI 112 (222)
T ss_dssp TEEEEE--SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG-S--S--E
T ss_pred CEEEEe-CCCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCccccceEe
Confidence 355555 48889999999998772 2 333 34677776 22332 24579999999887766 99999
Q ss_pred eeeecCc
Q 018287 210 QACYFPD 216 (358)
Q Consensus 210 h~~yl~~ 216 (358)
|+-.++-
T Consensus 113 HisClrp 119 (222)
T PF02611_consen 113 HISCLRP 119 (222)
T ss_dssp EEEEB-H
T ss_pred EhhhcCH
Confidence 9998773
No 34
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=58.46 E-value=12 Score=36.14 Aligned_cols=68 Identities=7% Similarity=0.076 Sum_probs=48.1
Q ss_pred EEEEeCcCCCCCeEEEeecCCCC----C-CCCH---HHHHHHHH---HHHH-----cCCCceeEeeccCCCCc-Cceeee
Q 018287 148 LVIINANPIEYGHVFVVPCGSNR----L-YPDA---RSFEMIVR---IAFE-----INNYSFRLFYDCSSPGA-SHVYFQ 210 (358)
Q Consensus 148 ~VliN~~Pi~~gH~LlVP~~~~~----~-~lt~---~~l~la~~---~~~~-----~~~~gf~vGyNsgga~a-nHLHfh 210 (358)
+|++. =+..+-|.|+||..... + .+++ +.+..|+. ++.+ ..+...-+..||-.|=. ||||.|
T Consensus 64 yvvlK-D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIH 142 (252)
T PRK05471 64 YVLLK-DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHIH 142 (252)
T ss_pred eEEEe-cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceeee
Confidence 44444 67779999999998773 2 4443 46666654 3333 25668999999987776 999999
Q ss_pred eeecCc
Q 018287 211 ACYFPD 216 (358)
Q Consensus 211 ~~yl~~ 216 (358)
+-.++-
T Consensus 143 IsClrp 148 (252)
T PRK05471 143 ISCLRP 148 (252)
T ss_pred hhhCCH
Confidence 998773
No 35
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=52.64 E-value=25 Score=34.01 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=44.2
Q ss_pred CCCCeEEEeecCCCC----C-CCCH---HHHHHHH---HHHHHc-----CCCceeEeeccCCCCc-CceeeeeeecCc
Q 018287 156 IEYGHVFVVPCGSNR----L-YPDA---RSFEMIV---RIAFEI-----NNYSFRLFYDCSSPGA-SHVYFQACYFPD 216 (358)
Q Consensus 156 i~~gH~LlVP~~~~~----~-~lt~---~~l~la~---~~~~~~-----~~~gf~vGyNsgga~a-nHLHfh~~yl~~ 216 (358)
..+-|.|+||..... + .+++ +.+..|+ .++.+. .+...-+..||-.|=. ||||.|+-.++-
T Consensus 70 ~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsClrp 147 (250)
T TIGR00672 70 NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHIHISCIRP 147 (250)
T ss_pred CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCcccccceeeHhhCCH
Confidence 678999999998773 2 4443 3666665 344432 4557999999987776 999999988774
No 36
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=39.98 E-value=1.4e+02 Score=26.78 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=37.3
Q ss_pred CceeeeecCC-CcccccccCCcccC-CCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH-HHHHH---HHHHHH---c
Q 018287 120 EELLFCVTRS-EKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR-SFEMI---VRIAFE---I 188 (358)
Q Consensus 120 ~eclfc~~~~-~~~~~e~~~~~~~~-~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~-~l~la---~~~~~~---~ 188 (358)
..|+||.--. +.++.+ .++. ++++.+++=-+.--|..++++|.+|... .++.. ...+| ..+++. .
T Consensus 13 Gs~L~~D~~~~E~~~~~----Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~l 88 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGE----RIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNL 88 (166)
T ss_dssp SS-HHHHHHHHHHHH-T----TEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCC----EEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhccc
Confidence 5789984321 111111 2233 5556666666667778899999999864 88865 22222 112221 2
Q ss_pred --CCCceeEeec-c-CCCC-c-Cceeeeeee
Q 018287 189 --NNYSFRLFYD-C-SSPG-A-SHVYFQACY 213 (358)
Q Consensus 189 --~~~gf~vGyN-s-gga~-a-nHLHfh~~y 213 (358)
.+.-|++|.. + ..+. . .++|+|...
T Consensus 89 f~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 89 FETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp CTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred CCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 3557888886 2 2222 2 348888765
No 37
>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]
Probab=37.11 E-value=70 Score=32.32 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCc------eEEEEeCCeE------EEEEeccC------CCCcC---------------
Q 018287 256 NNRIIMMEAISEICSSLREKNISY------NLLISDCGKR------IFLFLQKS------AISGN--------------- 302 (358)
Q Consensus 256 ~~~e~~~~~~~~~~~~L~~~ni~~------Nll~~~~g~r------v~ifPR~~------~~~~n--------------- 302 (358)
+....+.+.|..+..+|+..||+| ||+.+..+-. =|=|.... .+.|+
T Consensus 161 rea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKy 240 (400)
T KOG0604|consen 161 REASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKY 240 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhc
Confidence 345667778888889999999998 9999854321 12222221 11122
Q ss_pred --------chh---ccccceeeecChHHHhhcCHHHHHHHHH-hccCCHHHHHHHHHHHHhhhhhh
Q 018287 303 --------LLA---WECGGYFLFGSKYEFDQVTEEAIHKRLS-AVSLNDEGFQVVKQLCCSIASKL 356 (358)
Q Consensus 303 --------pa~---~ElaG~lv~~r~eDFe~lTee~~~~il~-evslsee~f~~l~~~~~~~~~~l 356 (358)
+|+ .=|||+-++.+..- ..++..-=.+|.. ...++++++..|.+.-+++...|
T Consensus 241 dkscdmwSlgVimYIlLCGyPPFYS~hg-~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~L 305 (400)
T KOG0604|consen 241 DKSCDMWSLGVIMYILLCGYPPFYSNHG-LAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKL 305 (400)
T ss_pred CCCCCccchhHHHHHhhcCCCcccccCC-ccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHH
Confidence 222 34688888888777 6777766666654 78899999998888777776554
No 38
>PF02500 DNA_pack_N: Probable DNA packing protein, N-terminus ; InterPro: IPR003499 This family includes proteins that are probably involved in DNA packing in Herpesviridae. This domain is normally found at the N terminus of the protein.; GO: 0006323 DNA packaging
Probab=27.89 E-value=49 Score=32.58 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEeecCCCCC-CCCHHHHHHHHHHHHHcCCCceeEeec
Q 018287 160 HVFVVPCGSNRL-YPDARSFEMIVRIAFEINNYSFRLFYD 198 (358)
Q Consensus 160 H~LlVP~~~~~~-~lt~~~l~la~~~~~~~~~~gf~vGyN 198 (358)
-++|||+||-.- .+.+= ..+++. +-.|.+|||=
T Consensus 191 TVFLVPRRHGKTWfvVpi-IsllL~-----s~~gI~IGYv 224 (284)
T PF02500_consen 191 TVFLVPRRHGKTWFVVPI-ISLLLA-----SFEGIKIGYV 224 (284)
T ss_pred cEEEeeccCCCcchHHHH-HHHHHH-----HhcCceeeeh
Confidence 369999999976 44332 222222 2289999996
No 39
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=26.07 E-value=1.2e+02 Score=26.33 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=45.1
Q ss_pred eCCeEEEEEeccCCCCcCchhccccceeeecChHH---Hh------hcCHHHHHHHHHhc-cCCHHHHHHHHHHHHhhhh
Q 018287 285 DCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYE---FD------QVTEEAIHKRLSAV-SLNDEGFQVVKQLCCSIAS 354 (358)
Q Consensus 285 ~~g~rv~ifPR~~~~~~npa~~ElaG~lv~~r~eD---Fe------~lTee~~~~il~ev-slsee~f~~l~~~~~~~~~ 354 (358)
..|..-++.|=.. -+-..|++-.+++++-...++ +. .++++++.+.++++ .+++++++.+.+.+..+|+
T Consensus 81 ~~GL~~~~~PI~~-~g~~iG~i~~G~v~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~ip~~~~~~l~~~~~ll~~~a~ 159 (173)
T PF10114_consen 81 HAGLVDIAVPIIV-DGEYIGYIICGQVLLEDPDDESELIRELAKKYGIDPEELLEAYEQIPVISEEQLQAIAELLQILAN 159 (173)
T ss_pred CcCceeeeeeEEE-CCEEEEEEEEEEeecCCCchhHHHHHHHHHHcCCCHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHH
Confidence 3455555555433 334467774444444432222 22 45566778888776 5799999999999999998
Q ss_pred hhc
Q 018287 355 KLA 357 (358)
Q Consensus 355 ~l~ 357 (358)
.|+
T Consensus 160 ~i~ 162 (173)
T PF10114_consen 160 YIS 162 (173)
T ss_pred HHH
Confidence 764
No 40
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=22.34 E-value=1.2e+02 Score=28.17 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=27.7
Q ss_pred cceeeecChHHHh-hcCHHHHHHHHHhc-cCCHHHHHHHHHHHHhh
Q 018287 309 GGYFLFGSKYEFD-QVTEEAIHKRLSAV-SLNDEGFQVVKQLCCSI 352 (358)
Q Consensus 309 aG~lv~~r~eDFe-~lTee~~~~il~ev-slsee~f~~l~~~~~~~ 352 (358)
+|.+.+|++.||+ .-+.+.+.+-|+-. .++-++=-+|-+++.++
T Consensus 114 g~li~~Ps~~Df~npe~~~~l~kYl~g~~~~~aeeR~rl~rLawDl 159 (205)
T PF03241_consen 114 GGLITLPSEADFDNPEIGPYLDKYLQGANGVSAEERVRLFRLAWDL 159 (205)
T ss_dssp GGGTC---HHHHH-TTTHHHHHHHT-BTTTC-HHHHHHHHHHHHHH
T ss_pred CCeeeCCCHHHhCCcchhHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 6788999999999 58888888888877 78755544444444433
No 41
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.05 E-value=1.4e+02 Score=25.16 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred hHHHhhcCHHHHHHHHHhccCCHHHHHHHHHHH
Q 018287 317 KYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLC 349 (358)
Q Consensus 317 ~eDFe~lTee~~~~il~evslsee~f~~l~~~~ 349 (358)
++.||++|.+++.+.+.+ +|+|+.++|.+.+
T Consensus 72 e~a~~~~~~~~lqkRle~--l~~eE~~~L~~ei 102 (104)
T PF11460_consen 72 EEAVDQLTNEELQKRLEE--LSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHhHHHHHHHHHh--CCHHHHHHHHHHh
Confidence 556777788888887776 5677777665543
No 42
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=21.06 E-value=1.9e+02 Score=27.29 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=43.5
Q ss_pred cCCCCcCchhccccceeeecChHHHhhcCHHHHHHHHHhccCCHHHHHHHHHHHHhhhhh
Q 018287 296 KSAISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASK 355 (358)
Q Consensus 296 ~~~~~~npa~~ElaG~lv~~r~eDFe~lTee~~~~il~evslsee~f~~l~~~~~~~~~~ 355 (358)
..+-..|.|.-+|-=... +.+|+-.++++++.+.|+.+++-...-..|++.+..|-++
T Consensus 42 ttD~~vn~at~~Lf~~~~--t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~ 99 (211)
T COG0177 42 TTDEVVNKATPALFKRYP--TPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEK 99 (211)
T ss_pred CchHHHHHHHHHHHHHcC--CHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 333344544444433322 6899999999999999999999999999999888877665
No 43
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.95 E-value=1.6e+02 Score=24.91 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=34.5
Q ss_pred hHHHhhcCHHHHHHHHHhccC-CHHHHHHHHHHHHhhhhhh
Q 018287 317 KYEFDQVTEEAIHKRLSAVSL-NDEGFQVVKQLCCSIASKL 356 (358)
Q Consensus 317 ~eDFe~lTee~~~~il~evsl-see~f~~l~~~~~~~~~~l 356 (358)
...++.+.++.+.++|....+ |.+++++|..+|-.+...|
T Consensus 72 ~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l 112 (118)
T TIGR01837 72 WDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQV 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999887 5899999999998887665
Done!