Query 018287
Match_columns 358
No_of_seqs 195 out of 401
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 12:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y23a_ d.13.1.1 (A:) Hit {Bac 99.2 3.5E-12 2.6E-16 106.8 6.0 90 120-213 1-103 (139)
2 d1xqua_ d.13.1.1 (A:) Putative 99.2 1.3E-11 9.6E-16 100.2 7.4 90 120-213 2-105 (113)
3 d1kpfa_ d.13.1.1 (A:) Protein 99.2 1.1E-11 8E-16 100.6 6.2 89 121-213 1-102 (111)
4 d1emsa1 d.13.1.1 (A:281-440) N 99.0 6.4E-10 4.6E-14 95.8 9.0 71 143-213 34-117 (160)
5 d2oika1 d.13.1.1 (A:6-144) His 98.9 1.8E-09 1.3E-13 90.3 7.9 85 119-213 3-97 (139)
6 d1fita_ d.13.1.1 (A:) FHIT (fr 98.8 4.1E-09 3E-13 89.1 8.3 70 144-213 18-100 (146)
7 d1z84a2 d.13.1.2 (A:196-351) G 98.6 2.5E-08 1.8E-12 84.7 6.5 88 119-213 18-122 (156)
8 d1guqa2 d.13.1.2 (A:178-348) G 98.5 3.9E-08 2.8E-12 84.3 5.7 92 119-213 16-124 (171)
9 d1vlra1 d.13.1.3 (A:146-337) m 97.4 0.00019 1.4E-08 62.7 7.9 66 153-219 64-142 (192)
10 d1z84a1 d.13.1.2 (A:23-195) Ga 95.7 0.021 1.6E-06 48.2 9.0 112 100-214 13-170 (173)
11 d1guqa1 d.13.1.2 (A:2-177) Gal 89.0 1.6 0.00012 36.1 10.8 109 99-213 20-170 (176)
12 d1z84a2 d.13.1.2 (A:196-351) G 79.1 3.7 0.00027 32.7 8.3 71 257-338 71-156 (156)
13 d2pofa1 d.13.1.4 (A:31-250) CD 55.6 5.3 0.00039 34.3 4.4 143 148-304 34-207 (220)
14 d1guqa2 d.13.1.2 (A:178-348) G 42.1 28 0.002 27.3 6.7 72 258-336 75-162 (171)
15 d2vcha1 c.87.1.10 (A:6-476) Hy 34.5 10 0.00076 33.1 3.0 66 287-353 372-438 (471)
16 d1whza_ d.50.3.2 (A:) Hypothet 26.9 17 0.0013 25.0 2.5 24 322-345 47-70 (70)
17 d2f2ac1 a.137.12.1 (C:3-94) Gl 24.6 33 0.0024 24.5 3.8 33 322-354 1-35 (92)
18 d2uube1 d.14.1.1 (E:74-154) Ri 23.0 22 0.0016 25.5 2.4 35 277-311 3-42 (81)
19 d1s99a_ d.58.48.2 (A:) Putativ 20.7 32 0.0023 28.5 3.3 30 66-97 124-153 (189)
No 1
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Probab=99.23 E-value=3.5e-12 Score=106.82 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=64.0
Q ss_pred CceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH-------HHHHHHHHHHHc-C
Q 018287 120 EELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR-------SFEMIVRIAFEI-N 189 (358)
Q Consensus 120 ~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~-------~l~la~~~~~~~-~ 189 (358)
+.|+||...+.+.... .+..++.++++++.+|+.+||+|+||.+|... .|+.+ ++..+.+.+++. .
T Consensus 1 e~CiFC~I~~~e~p~~----~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~ 76 (139)
T d1y23a_ 1 ENCIFCKIIAGDIPSA----KVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFE 76 (139)
T ss_dssp CCCHHHHHHHTSSCCC----EEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHC
T ss_pred CcCccCccccCCCCcc----EEEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcc
Confidence 4699995433221111 23347889999999999999999999999854 88876 222334444444 8
Q ss_pred CCceeEeeccCC--CC-cCceeeeeee
Q 018287 190 NYSFRLFYDCSS--PG-ASHVYFQACY 213 (358)
Q Consensus 190 ~~gf~vGyNsgg--a~-anHLHfh~~y 213 (358)
+.|||+++|+|. +. -.|+|+|++.
T Consensus 77 ~~g~~i~~n~g~~agq~v~H~H~HviP 103 (139)
T d1y23a_ 77 PIGLNTLNNNGEKAGQSVFHYHMHIIP 103 (139)
T ss_dssp CSEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred cCCcEEEeCCCccccEecCEEEEEEEc
Confidence 889999999763 22 2899999976
No 2
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=99.19 E-value=1.3e-11 Score=100.21 Aligned_cols=90 Identities=17% Similarity=0.284 Sum_probs=64.7
Q ss_pred CceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH-------HHHHHHHHHHHc--
Q 018287 120 EELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR-------SFEMIVRIAFEI-- 188 (358)
Q Consensus 120 ~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~-------~l~la~~~~~~~-- 188 (358)
+.|+||..-+.+.... .+..++.++++++.+|..+||+|+||.+|... .++.+ +...+...+++.
T Consensus 2 ~~CiFC~I~~~e~p~~----ivyede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (113)
T d1xqua_ 2 ENCVFCKIIKRELPST----IYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGI 77 (113)
T ss_dssp TTCHHHHHHTTSSCBC----EEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCCcccCCCCccc----EEEeCCCEEEEECCCCCCCceEEEeecccccchhhccchhHHHHHHHHHHHHHHHHhhcc
Confidence 4699996544432121 23348899999999999999999999999854 66654 333445555543
Q ss_pred CCCceeEeeccCC--CCc-Cceeeeeee
Q 018287 189 NNYSFRLFYDCSS--PGA-SHVYFQACY 213 (358)
Q Consensus 189 ~~~gf~vGyNsgg--a~a-nHLHfh~~y 213 (358)
+..||++++|.|. +.. .|+|+|+.-
T Consensus 78 ~~~g~~~~~~~g~~agq~v~HlH~Hvip 105 (113)
T d1xqua_ 78 AEKGYRLITNCGVAAGQTVFHLHYHLLG 105 (113)
T ss_dssp TTTCEEEECCCSTTTTCCSCSCCEEEEE
T ss_pred CCCceEEEEeCccccccccCeeEEEEeC
Confidence 5789999999653 323 899999987
No 3
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.18 E-value=1.1e-11 Score=100.65 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=62.8
Q ss_pred ceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHH-------HHHHHHHHHHHc-CC
Q 018287 121 ELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDAR-------SFEMIVRIAFEI-NN 190 (358)
Q Consensus 121 eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~-------~l~la~~~~~~~-~~ 190 (358)
+|+||..-+.+.... .+..++.++++++.+|+.+||+|+||.+|... .++.+ +...+.+++++. .+
T Consensus 1 dCiFc~I~~~e~p~~----ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (111)
T d1kpfa_ 1 DTIFGKIIRKEIPAK----IIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLN 76 (111)
T ss_dssp CCHHHHHHTTSSCCC----EEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCcccccccCCCCcc----EEEeCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 599996543322111 12337889999999999999999999999854 77776 223334455554 56
Q ss_pred CceeEeeccC--CCC-cCceeeeeee
Q 018287 191 YSFRLFYDCS--SPG-ASHVYFQACY 213 (358)
Q Consensus 191 ~gf~vGyNsg--ga~-anHLHfh~~y 213 (358)
+|||+++|.| |+. -.|+|+|+.-
T Consensus 77 ~g~~i~~n~g~~agq~V~HlH~Hiip 102 (111)
T d1kpfa_ 77 KGYRMVVNEGSDGGQSVYHVHLHVLG 102 (111)
T ss_dssp TCEEEECCCHHHHTCCSSSCCEEEEE
T ss_pred CCEEEEEeCCccCCcccceeEEEEeC
Confidence 7999999964 222 3899999986
No 4
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.97 E-value=6.4e-10 Score=95.83 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=54.1
Q ss_pred CCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHHHHHH-------HHHHHHHc-CCCceeEeeccCC--CC-cCceee
Q 018287 143 PNDSILVIINANPIEYGHVFVVPCGSNRL--YPDARSFEM-------IVRIAFEI-NNYSFRLFYDCSS--PG-ASHVYF 209 (358)
Q Consensus 143 ~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~~l~l-------a~~~~~~~-~~~gf~vGyNsgg--a~-anHLHf 209 (358)
.++.++++++.+|+.+||+|+||.+|... .|+++.+.. +.+.+... ++.|||+++|.|. +. ..|+|+
T Consensus 34 ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~HlHi 113 (160)
T d1emsa1 34 STPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHI 113 (160)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCCE
T ss_pred eCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccceEEEecccCCCCCeEEeEEEE
Confidence 37889999999999999999999999864 888773222 22233333 7889999999653 22 389999
Q ss_pred eeee
Q 018287 210 QACY 213 (358)
Q Consensus 210 h~~y 213 (358)
|++.
T Consensus 114 HIIP 117 (160)
T d1emsa1 114 HILP 117 (160)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9986
No 5
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=98.88 E-value=1.8e-09 Score=90.32 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=60.7
Q ss_pred CCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHH-------HHHHHHHHHHc-
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARS-------FEMIVRIAFEI- 188 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~-------l~la~~~~~~~- 188 (358)
+++|+||..... + .+..++.+.++++.+|+.+||+|+||.+|.. + .|+++. +..+.+.+++.
T Consensus 3 ~~~C~fC~~~~~----~----ii~e~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~ 74 (139)
T d2oika1 3 HKNCELCTTAGG----E----ILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVM 74 (139)
T ss_dssp CTTCHHHHSCCS----E----EEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCccccCcCC----e----EEEECCCEEEEEcCCCCCCcEEEEecccccchhhhccHHHHHHHHHHHHHHhHHHHhhc
Confidence 468999964332 1 2334788999999999999999999999985 4 898872 22233344443
Q ss_pred CCCceeEeeccCCCCcCceeeeeee
Q 018287 189 NNYSFRLFYDCSSPGASHVYFQACY 213 (358)
Q Consensus 189 ~~~gf~vGyNsgga~anHLHfh~~y 213 (358)
+..+++++.+ |-...|+|+|++.
T Consensus 75 ~~~~~n~~~~--g~~v~HlH~HviP 97 (139)
T d2oika1 75 RPDKINLASL--GNMTPHVHWHVIP 97 (139)
T ss_dssp CCSEEEEEEC--CSSSCSCEEEEEE
T ss_pred chhhhHHHHh--cCCCCeEEEEEec
Confidence 6778777753 3334799999987
No 6
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.82 E-value=4.1e-09 Score=89.05 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCceEEEEeCcCCCCCeEEEeecCCCC-C-CCCHHHHHH-------HHHHHHHc-CCCceeEeeccCC--CC-cCceeee
Q 018287 144 NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEM-------IVRIAFEI-NNYSFRLFYDCSS--PG-ASHVYFQ 210 (358)
Q Consensus 144 ~~~~~VliN~~Pi~~gH~LlVP~~~~~-~-~lt~~~l~l-------a~~~~~~~-~~~gf~vGyNsgg--a~-anHLHfh 210 (358)
++.++++++.+|+.+||+|+||.+|.. + .|+.+.... +.+.+.+. ++.||++++|.|. +. ..|+|+|
T Consensus 18 ~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~v~HlH~H 97 (146)
T d1fita_ 18 TELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVH 97 (146)
T ss_dssp CSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSSCCEE
T ss_pred CCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEEEccccccCCCCCEEEEE
Confidence 788999999999999999999999995 4 888762222 22333333 7899999999652 22 3899999
Q ss_pred eee
Q 018287 211 ACY 213 (358)
Q Consensus 211 ~~y 213 (358)
++.
T Consensus 98 iiP 100 (146)
T d1fita_ 98 VLP 100 (146)
T ss_dssp EEE
T ss_pred Eec
Confidence 886
No 7
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.60 E-value=2.5e-08 Score=84.73 Aligned_cols=88 Identities=9% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHHH-------HHHHHHHHHH-c
Q 018287 119 NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDARS-------FEMIVRIAFE-I 188 (358)
Q Consensus 119 ~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~~-------l~la~~~~~~-~ 188 (358)
.++|+||.... .+. .+..+++++++++.+|..+||+|+||.+|... .++++. +..+.+.+.. .
T Consensus 18 ~~~Cifc~i~~----~~r---iV~e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~ 90 (156)
T d1z84a2 18 TGKCCLCEAKS----KHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQL 90 (156)
T ss_dssp HSSCTTTTHHH----HSE---EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCceEEecC----CCE---EEEECCCEEEEEccCCCcCcEEEEEecchhhhhccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799995422 121 23347889999999999999999999999965 888862 2223333333 3
Q ss_pred CCCceeEeeccC---CCCc----Cceeeeeee
Q 018287 189 NNYSFRLFYDCS---SPGA----SHVYFQACY 213 (358)
Q Consensus 189 ~~~gf~vGyNsg---ga~a----nHLHfh~~y 213 (358)
+.+++++|+|++ +..+ -|+|+|++.
T Consensus 91 ~~~~~n~~~~~~p~~~~~~~~~~~H~hi~~~P 122 (156)
T d1z84a2 91 NDPPYNYMIHTSPLKVTESQLPYTHWFLQIVP 122 (156)
T ss_dssp TSCCEEEEEECCCTTCCGGGGGGCCCEEEEEE
T ss_pred CCCcccHhhhcCCCCCcccCceeEEEEEEecC
Confidence 788999999953 2222 377777776
No 8
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=98.52 E-value=3.9e-08 Score=84.34 Aligned_cols=92 Identities=4% Similarity=-0.056 Sum_probs=58.9
Q ss_pred CCceeeeecCCCc-ccccccCCcccCCCceEEEEeCcCCCCCeEEEeecCCCCC--CCCHHHHH-------HHHHHHHHc
Q 018287 119 NEELLFCVTRSEK-ANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDARSFE-------MIVRIAFEI 188 (358)
Q Consensus 119 ~~eclfc~~~~~~-~~~e~~~~~~~~~~~~~VliN~~Pi~~gH~LlVP~~~~~~--~lt~~~l~-------la~~~~~~~ 188 (358)
...|+||..-..+ +..+. .+..+++++++++.+|..|||+|+||.+|... .|+++... .+.+.+...
T Consensus 16 ~~~clfcdii~~E~~~~~R---iV~e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~ 92 (171)
T d1guqa2 16 QKSPMLVDYVQRELADGSR---TVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNL 92 (171)
T ss_dssp HSSCHHHHHHHHHHHHCTT---EEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHhhccCCCe---EEEECCeEEEEEcCCCCCcceEEEecchhcCChhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999542211 11121 12348899999999999999999999999964 88876222 223333333
Q ss_pred -CCC-ceeEeeccCCCC-c--C--ceeeeeee
Q 018287 189 -NNY-SFRLFYDCSSPG-A--S--HVYFQACY 213 (358)
Q Consensus 189 -~~~-gf~vGyNsgga~-a--n--HLHfh~~y 213 (358)
.++ +|++++|.+.+. . . |+|+|++.
T Consensus 93 ~~~~~~y~~~~~~~p~~~~~~~~~H~Hihi~P 124 (171)
T d1guqa2 93 FQCSFPYSMGWHGAPFNGEENQHWQLHAHFYP 124 (171)
T ss_dssp HTSCCCEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred ccCCcchhhhhhcCccccCCCceeEEEEEEcc
Confidence 444 799999954332 2 4 55666554
No 9
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.38 E-value=0.00019 Score=62.72 Aligned_cols=66 Identities=6% Similarity=-0.010 Sum_probs=49.8
Q ss_pred CcCCCCCeEEEeecCCC--CC-CCCHH-------HHHHHHHHHHHc---CCCceeEeeccCCCCcCceeeeeeecCceec
Q 018287 153 ANPIEYGHVFVVPCGSN--RL-YPDAR-------SFEMIVRIAFEI---NNYSFRLFYDCSSPGASHVYFQACYFPDHLP 219 (358)
Q Consensus 153 ~~Pi~~gH~LlVP~~~~--~~-~lt~~-------~l~la~~~~~~~---~~~gf~vGyNsgga~anHLHfh~~yl~~~lP 219 (358)
..|...-|+|+||.+++ ++ .|+.+ |...+.+++.+. ...+||+|||++=+. .|||+|+..++..-|
T Consensus 64 ~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~~~~gi~~~~~Rig~H~~PSv-~HLHlHvi~~~~~~~ 142 (192)
T d1vlra1 64 QQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLPSY-YHLHVHFTALGFEAP 142 (192)
T ss_dssp SSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSCSS-SSCEEEEEETTSCCT
T ss_pred CCcccCeEEEEEEccCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHhCCChhheEEEEECCCCE-eeeEEEEEeccCCCC
Confidence 46999999999999884 45 88876 444455555442 567999999976544 799999999776655
No 10
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.66 E-value=0.021 Score=48.23 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=57.3
Q ss_pred EEEcCccccCccCCccc-----c-CCCceeeeecCCCcccccccCCcccC---CCceEEEEeCcCCC-------------
Q 018287 100 AQLNEKWIMDPFILNSI-----D-QNEELLFCVTRSEKANSELIPSAAVP---NDSILVIINANPIE------------- 157 (358)
Q Consensus 100 aQlNp~R~~~~~kfnf~-----k-~~~eclfc~~~~~~~~~e~~~~~~~~---~~~~~VliN~~Pi~------------- 157 (358)
+-..|+|..+...+... . ....|.||..+......+.. .+.. +=.+.|+=|.||..
T Consensus 13 Viisp~R~kRP~~~~~~~~~~~~~~~~~CPfCpGne~~~~~~~~--~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~ 90 (173)
T d1z84a1 13 VIFSPARAKRPTDFKSKSPQNPNPKPSSCPFCIGREQECAPELF--RVPDHDPNWKLRVIENLYPALSRNLETQSTQPET 90 (173)
T ss_dssp EEECC----CGGGCCCCCC-------CCCTTSTTCGGGSSCEEE--EESTTCSSCSEEEEECSSCSSBGGGTTTC-----
T ss_pred EEEeCCccCCCcccccCCCCcCCCCcccCCCCCCCcccCCCcce--eccccCCCceEEEeCCCCcccccccccccccCcC
Confidence 45788997664422211 2 34579999755332212211 1111 12467888999963
Q ss_pred ---------CCeEEEeecCCCC--C-CCCHHHHHHHHH-----HHHHcCCC---ceeEeec----cCCCCcCceeeeeee
Q 018287 158 ---------YGHVFVVPCGSNR--L-YPDARSFEMIVR-----IAFEINNY---SFRLFYD----CSSPGASHVYFQACY 213 (358)
Q Consensus 158 ---------~gH~LlVP~~~~~--~-~lt~~~l~la~~-----~~~~~~~~---gf~vGyN----sgga~anHLHfh~~y 213 (358)
-.|=.+|-...|. + .|+.+.+..+++ +....+++ +.-+|-| +||+. .|-|.|++-
T Consensus 91 ~~~~~~~~~G~heVIi~sp~H~~~l~~~~~e~i~~v~~~~~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl-~HPH~QI~a 169 (173)
T d1z84a1 91 GTSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASM-SHSHSQMMA 169 (173)
T ss_dssp ---CEEECBCEEEEEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCC-SSCEEEEEE
T ss_pred cceeecccccceeeEEeCccccCChhhCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeecCccCccCC-CCCCeeeee
Confidence 2343555555553 4 888773333322 22233443 6677888 44444 799999997
Q ss_pred c
Q 018287 214 F 214 (358)
Q Consensus 214 l 214 (358)
+
T Consensus 170 ~ 170 (173)
T d1z84a1 170 L 170 (173)
T ss_dssp E
T ss_pred e
Confidence 3
No 11
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=88.98 E-value=1.6 Score=36.14 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=60.9
Q ss_pred EEEEcCccccCccCCcccc--------CCCceeeeecCCCcccccccCCcccCCCceEEEEeCcCCCC------------
Q 018287 99 LAQLNEKWIMDPFILNSID--------QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEY------------ 158 (358)
Q Consensus 99 ~aQlNp~R~~~~~kfnf~k--------~~~eclfc~~~~~~~~~e~~~~~~~~~~~~~VliN~~Pi~~------------ 158 (358)
.+-++|+|..+..++.-.. ....|.||..+......+ ....-...|+=|.||-..
T Consensus 20 wViia~~R~~RP~~~~~~~~~~~~~p~~~~~CPfCpgn~~~~~~~-----~~~~~~vrv~~N~~pal~~~~~~~~~~~~~ 94 (176)
T d1guqa1 20 WILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDK-----NPDYTGTYVFTNDFAALMSDTPDAPESHDP 94 (176)
T ss_dssp EEEECTTGGGSCCCSCCCCCCCSCCCSSCTTCTTSTTCBCTTSCB-----CCCCSSCEEEECTTCSCCTTCCCCCCCCCS
T ss_pred EEEEeCCccCCCCCCcccCCcccCCCCCCCCCCCCCCcccccccC-----CCCccceeeecCCCcccccCcccccccCCc
Confidence 3457888888764322111 123599996543321111 112345789999999541
Q ss_pred --------C-eEEEeecCCC--CC-CCCHHHHHHHHHH-----HHHc-CCCceeEeeccC----CCCcCceeeeeee
Q 018287 159 --------G-HVFVVPCGSN--RL-YPDARSFEMIVRI-----AFEI-NNYSFRLFYDCS----SPGASHVYFQACY 213 (358)
Q Consensus 159 --------g-H~LlVP~~~~--~~-~lt~~~l~la~~~-----~~~~-~~~gf~vGyNsg----ga~anHLHfh~~y 213 (358)
| |-.+|=...| .+ .|+.+-+..++.+ .... .-.+.-+|=|-| ++. .|-|.|++-
T Consensus 95 l~~~~~~~G~heVIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~~l~~~i~yv~iFkN~G~~aGaSl-~HPH~QI~a 170 (176)
T d1guqa1 95 LMRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSN-PHPGGQIWA 170 (176)
T ss_dssp SSCEEECCEEEEEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEESGGGTCSC-CSSEEEEEE
T ss_pred ccccCCCCCceeEEEECcccccChhhCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEeecCccccCCC-CCCCeeeee
Confidence 1 4444434444 34 7887744333222 2212 456788999933 333 799999998
No 12
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=79.13 E-value=3.7 Score=32.66 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHhhh--cCCCceEEEEe---C---------CeEEEEEeccCCCCcCchhcccc-ceeeecChHHHh
Q 018287 257 NRIIMMEAISEICSSLRE--KNISYNLLISD---C---------GKRIFLFLQKSAISGNLLAWECG-GYFLFGSKYEFD 321 (358)
Q Consensus 257 ~~e~~~~~~~~~~~~L~~--~ni~~Nll~~~---~---------g~rv~ifPR~~~~~~npa~~Ela-G~lv~~r~eDFe 321 (358)
...+++.++.++...|.. ...++|+.+-. + -+.+-++||.+ +.|..|++ |.++.
T Consensus 71 e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~p~~~~~~~~~~~H~hi~~~Pr~~----~~aG~E~~tg~~~n------- 139 (156)
T d1z84a2 71 KAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLS----GVGGFEIGTGCYIN------- 139 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEECCC----CCCHHHHHHSCCEE-------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHhhhcCCCCCcccCceeEEEEEEecCCCC----ccccceeecccccC-------
Confidence 346666777777777643 35678987652 1 15888999986 22334443 56554
Q ss_pred hcCHHHHHHHHHhccCC
Q 018287 322 QVTEEAIHKRLSAVSLN 338 (358)
Q Consensus 322 ~lTee~~~~il~evsls 338 (358)
.++.|++.+.|++|.+|
T Consensus 140 ~~~PE~~A~~LR~~~~~ 156 (156)
T d1z84a2 140 PVFPEDVAKVMREVSLT 156 (156)
T ss_dssp SSCHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHhhhcC
Confidence 58899999999999875
No 13
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}
Probab=55.56 E-value=5.3 Score=34.34 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=79.9
Q ss_pred EEEEeCcCCCCCeEEEeecCCCC-C----CCCHH---HHHHHHH---HHH-Hc----CCCceeEeeccCCCCc-Cceeee
Q 018287 148 LVIINANPIEYGHVFVVPCGSNR-L----YPDAR---SFEMIVR---IAF-EI----NNYSFRLFYDCSSPGA-SHVYFQ 210 (358)
Q Consensus 148 ~VliN~~Pi~~gH~LlVP~~~~~-~----~lt~~---~l~la~~---~~~-~~----~~~gf~vGyNsgga~a-nHLHfh 210 (358)
+|++. =+..+-|.|+||..... . .+++. .+..|+. ++. .. .+..+-+..||-.+=. ||||.|
T Consensus 34 yvvlK-D~~G~~qyLliPt~rIsGIEsP~Ll~~~~pnyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gRSQdQLHIH 112 (220)
T d2pofa1 34 YVVLK-DLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIH 112 (220)
T ss_dssp EEEEE-CSSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCGGGCSCCSCCEE
T ss_pred EEEEe-CCCCCceEEEeecccccCccChhhcCCCCccHHHHHHHHhHHHHHHhCCCCCchheEEEecCCCCcCccceeee
Confidence 34444 47889999999998773 2 44443 6666664 222 22 4568999999887776 999999
Q ss_pred eeecCce--------e-cccccCCcccccCCCCceEEEEccCCceeEEEEEEecCCHHHHHHHHHHHHHHhhhcCC---C
Q 018287 211 ACYFPDH--------L-PVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNI---S 278 (358)
Q Consensus 211 ~~yl~~~--------l-PiE~~~~~~l~~~~~~g~~v~~l~dyP~~~~vf~~~~~~~e~~~~~~~~~~~~L~~~ni---~ 278 (358)
+-.++-. . .+-..| .++.. + |.+.+-.+..+.. ... ...+-|..+.+.++.... .
T Consensus 113 I~Clrp~v~~~L~~~~~~~~~~W-~~lp~----~-----L~Gh~Y~a~rv~~--~~l-~~~~pF~~La~~~p~a~~~mg~ 179 (220)
T d2pofa1 113 ISCIRPDVREQLDNNLANISSRW-LPLPG----G-----LRGHEYLARRVTE--SEL-VQRSPFMMLAEEVPEAREHMGS 179 (220)
T ss_dssp EEEBCHHHHHHHHTTGGGCCSSC-EECTT----C-----BTTBCCEEEEECH--HHH-HHSCHHHHHHHHSTTTTTCGGG
T ss_pred hhhCCHHHHHHHHHhcccccCCc-eECCc----c-----cCCceEEEEEecc--hhc-ccCCHHHHHHhhCCccccchhh
Confidence 9987632 1 222233 22211 1 2333344444433 111 223577888888875432 2
Q ss_pred ceEEEEe--CCeEEEEEeccCCCCcCch
Q 018287 279 YNLLISD--CGKRIFLFLQKSAISGNLL 304 (358)
Q Consensus 279 ~Nll~~~--~g~rv~ifPR~~~~~~npa 304 (358)
+.|.++. +|..+.|-=|......+.|
T Consensus 180 ~~lav~~~~~~~fvLLa~~~~~~~~~~a 207 (220)
T d2pofa1 180 YGLAMVRQSDNSFVLLATQRNLLTLNRA 207 (220)
T ss_dssp EEEEEEECTTSCEEEEEEECBTTTTBCC
T ss_pred ceEEEEEcCCCCEEEEEeecccccCCcc
Confidence 5777774 3344444434332333333
No 14
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=42.14 E-value=28 Score=27.29 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHh---hhcCCCceEEEEeCC----------eEEEEEeccCC---CCcCchhccccceeeecChHHHh
Q 018287 258 RIIMMEAISEICSSL---REKNISYNLLISDCG----------KRIFLFLQKSA---ISGNLLAWECGGYFLFGSKYEFD 321 (358)
Q Consensus 258 ~e~~~~~~~~~~~~L---~~~ni~~Nll~~~~g----------~rv~ifPR~~~---~~~npa~~ElaG~lv~~r~eDFe 321 (358)
..+++..+.++...| -....++|+.+.... +-+-|+||-.| ..-+.|..|+++=. ..
T Consensus 75 ~~~L~~~~~~v~~~l~~~~~~~~~y~~~~~~~p~~~~~~~~~H~Hihi~Pr~~r~~~~~~~~~g~E~~~~~-------~~ 147 (171)
T d1guqa2 75 RSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAET-------QR 147 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCEEEETTEECCCCHHHHHTCC-------EE
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchhhhhhcCccccCCCceeEEEEEEccCccCCCCccccceeeeecccc-------cC
Confidence 455555555555554 445567898876311 57789997542 11223344443222 23
Q ss_pred hcCHHHHHHHHHhcc
Q 018287 322 QVTEEAIHKRLSAVS 336 (358)
Q Consensus 322 ~lTee~~~~il~evs 336 (358)
.+++|++.+.|++|+
T Consensus 148 ~~~pE~~A~~LR~~~ 162 (171)
T d1guqa2 148 DLTAEQAAERLRAVS 162 (171)
T ss_dssp SSCHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHhhC
Confidence 478888999999865
No 15
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.51 E-value=10 Score=33.13 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=42.8
Q ss_pred CeEEEEEeccCCCCcCchh-ccccceeeecChHHHhhcCHHHHHHHHHhccCCHHHHHHHHHHHHhhh
Q 018287 287 GKRIFLFLQKSAISGNLLA-WECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIA 353 (358)
Q Consensus 287 g~rv~ifPR~~~~~~npa~-~ElaG~lv~~r~eDFe~lTee~~~~il~evslsee~f~~l~~~~~~~~ 353 (358)
|+-++++|.-.+.-.|-+- .|-.|.=+..+..+...+|++++.+.+++|- ++++..+.+++..++.
T Consensus 372 GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv~l~~~~~~~~t~~~l~~ai~~vl-~~~~~~~~r~ra~~l~ 438 (471)
T d2vcha1 372 GIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKELK 438 (471)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHH-TSTHHHHHHHHHHHHH
T ss_pred CCCEEEcccccccHHHHHHHHHHheeEEEEecCCCCcCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHH
Confidence 5788888887755555443 3754443444555677899999999999995 4444444555555444
No 16
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=26.87 E-value=17 Score=25.04 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.4
Q ss_pred hcCHHHHHHHHHhccCCHHHHHHH
Q 018287 322 QVTEEAIHKRLSAVSLNDEGFQVV 345 (358)
Q Consensus 322 ~lTee~~~~il~evslsee~f~~l 345 (358)
.+..-.+.+|++++.|+.|+|.+|
T Consensus 47 ei~~gtl~~Ilkqagl~~eef~~L 70 (70)
T d1whza_ 47 ELPKGTFKRILRDAGLTEEEFHNL 70 (70)
T ss_dssp SCCHHHHHHHHHHTTCCHHHHHHC
T ss_pred ccCHHHHHHHHHHhCCCHHHHHhC
Confidence 578889999999999999999864
No 17
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=24.62 E-value=33 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.0
Q ss_pred hcCHHHHHHHH--HhccCCHHHHHHHHHHHHhhhh
Q 018287 322 QVTEEAIHKRL--SAVSLNDEGFQVVKQLCCSIAS 354 (358)
Q Consensus 322 ~lTee~~~~il--~evslsee~f~~l~~~~~~~~~ 354 (358)
++|++++.++- +.++|++++-+++.+.+.+|-+
T Consensus 1 KIs~e~i~~lA~LarL~l~deE~~~~~~~l~~Il~ 35 (92)
T d2f2ac1 1 KVTREEVEHIANLARLQISPEETEEMANTLESILD 35 (92)
T ss_dssp CCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 57888887765 4788999999999888877643
No 18
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.03 E-value=22 Score=25.52 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCceEEEEeCCeEEEEEeccCCCC--cC---chhccccce
Q 018287 277 ISYNLLISDCGKRIFLFLQKSAIS--GN---LLAWECGGY 311 (358)
Q Consensus 277 i~~Nll~~~~g~rv~ifPR~~~~~--~n---pa~~ElaG~ 311 (358)
|||-+..-.+..+|++.|+.+-++ +. =++|||+|.
T Consensus 3 Iph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGI 42 (81)
T d2uube1 3 IPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGV 42 (81)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCEECCHHHHHHHHHTTC
T ss_pred cceEEEEEECcEEEEEEECCCCCcccccHHHHHHHHHhCc
Confidence 678887777789999999988333 22 288999996
No 19
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=20.65 E-value=32 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCcccccCCeeEEEecCCce
Q 018287 66 LLLAQWEERMWRGCFRYDVTASEIKVISGGKK 97 (358)
Q Consensus 66 ~ll~~We~a~~~glFrY~L~~~~tK~l~G~~~ 97 (358)
.+-..|+-+++.|+|+ +=.+--||. .|+.+
T Consensus 124 ~Iy~~id~~k~~G~~~-~s~h~~trl-~Gd~~ 153 (189)
T d1s99a_ 124 LIMEAVDIAKAQGTFV-QGVHYASEL-DGDAH 153 (189)
T ss_dssp HHHHHHHHHHHTTCEE-EEETTEEEE-CSBHH
T ss_pred HHHHHHHHHHHcCCCc-ccceeeeee-cCchH
Confidence 5699999999999997 444456666 36543
Done!