Query 018288
Match_columns 358
No_of_seqs 190 out of 2305
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.5 1.2E-06 4.3E-11 65.4 11.5 72 126-197 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.4 4.6E-07 1.6E-11 70.2 6.5 63 288-350 42-105 (137)
3 2i68_A Protein EMRE; transmemb 98.4 7.6E-07 2.6E-11 68.9 7.5 71 126-196 33-104 (137)
4 3b5d_A Multidrug transporter E 98.3 1.2E-05 4.1E-10 60.0 12.8 60 291-350 45-105 (110)
5 2l2t_A Receptor tyrosine-prote 50.6 13 0.00043 22.0 2.5 17 337-353 24-40 (44)
6 2ks1_B Epidermal growth factor 36.0 27 0.00091 20.6 2.4 8 340-347 28-35 (44)
7 3l1l_A Arginine/agmatine antip 35.8 1.7E+02 0.0057 26.3 9.2 23 331-353 409-431 (445)
8 4fc4_A Nitrite transporter NIR 30.0 2.5E+02 0.0085 23.6 11.8 65 235-299 104-174 (261)
9 2jwa_A Receptor tyrosine-prote 21.9 64 0.0022 18.9 2.3 7 343-349 31-37 (44)
10 2h3o_A MERF; membrane protein, 10.4 55 0.0019 20.7 -0.1 15 340-354 43-57 (61)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.53 E-value=1.2e-06 Score=65.35 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHH-hhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc
Q 018288 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAI-GATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE 197 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~ 197 (358)
.+...+++..+..+...++++.|.+.+..+ ....|+++.+++++++||++++.+++|+.+++.|+++....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345556778889999999999999999988 899999999999999999999999999999999999887544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.40 E-value=4.6e-07 Score=70.20 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccchhHHHHh-hhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018288 288 LVNLTNFLVTKHTSALTLQVL-GNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~s~~-~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
+..+++..++++.++..+..+ ..+.|++++++|+++|||++++.+++|+++++.|+++.+..+
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334556778999999988888 899999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=7.6e-07 Score=68.95 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHH-hhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018288 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAI-GATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
.+...+++.+++.+.+.+++++|++.+..+ .+..|+++.++++++++|++++.+++|++++++|++++...
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344456778889999999999999999888 89999999999999999999999999999999999988644
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=1.2e-05 Score=59.97 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=53.4
Q ss_pred HHHHHHHhccchhHHHHh-hhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018288 291 LTNFLVTKHTSALTLQVL-GNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~s~~-~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
+....++++.+...+..+ ..+.|+.+.++++++|||+++..+++|.++++.|++..+..+
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445567899999998777 899999999999999999999999999999999999887643
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=50.61 E-value=13 Score=21.99 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhhcccc
Q 018288 337 AVTIMGVVLYSEAKKRS 353 (358)
Q Consensus 337 ~lii~g~~~~~~~~~~~ 353 (358)
+++..+.++|.+.++++
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 33344444444444333
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.99 E-value=27 Score=20.58 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=2.9
Q ss_pred HHHHHHhh
Q 018288 340 IMGVVLYS 347 (358)
Q Consensus 340 i~g~~~~~ 347 (358)
.++.++|.
T Consensus 28 ~~~~~~~~ 35 (44)
T 2ks1_B 28 ALGIGLFM 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.78 E-value=1.7e+02 Score=26.27 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHhhhhcccc
Q 018288 331 MGMTGFAVTIMGVVLYSEAKKRS 353 (358)
Q Consensus 331 ~~~~G~~lii~g~~~~~~~~~~~ 353 (358)
..+.|.++++.|+.+|...++|+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 35568888889988887665443
No 8
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=29.98 E-value=2.5e+02 Score=23.59 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHH---HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018288 235 SMNLLLYMAPMSALILLPFTLYIEG---NVAATT---IEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKH 299 (358)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (358)
-|...+..|++|+++...+...... +..... ..........+-.++-+..++.+..+..+...+.
T Consensus 104 ~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~ 174 (261)
T 4fc4_A 104 ILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIRT 174 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTTSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667778888888876544433211 111000 1111112233555666666777776666655554
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.89 E-value=64 Score=18.93 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.8
Q ss_pred HHHhhhh
Q 018288 343 VVLYSEA 349 (358)
Q Consensus 343 ~~~~~~~ 349 (358)
+.+|.++
T Consensus 31 ~~~~~RR 37 (44)
T 2jwa_A 31 FGILIKR 37 (44)
T ss_dssp HHHHHHH
T ss_pred HHhheeh
Confidence 3444433
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=10.43 E-value=55 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=9.7
Q ss_pred HHHHHHhhhhccccc
Q 018288 340 IMGVVLYSEAKKRSK 354 (358)
Q Consensus 340 i~g~~~~~~~~~~~~ 354 (358)
+.|..+|...|+|++
T Consensus 43 figl~~Y~~~r~~~~ 57 (61)
T 2h3o_A 43 FIGLTIYAIQRKRQA 57 (61)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhh
Confidence 447788877665543
Done!