Query 018288
Match_columns 358
No_of_seqs 190 out of 2305
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 12:53:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 20.5 44 0.0032 15.5 3.1 18 203-220 3-20 (27)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 8.4 79 0.0058 20.3 1.8 8 351-358 96-103 (103)
3 d1iwga8 f.35.1.1 (A:513-566,A: 5.6 5.1E+02 0.037 18.7 8.0 29 314-342 95-123 (222)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 5.6 6.7E+02 0.048 20.1 19.0 84 162-249 241-326 (383)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.3 5.8E+02 0.043 19.0 6.9 61 126-190 5-65 (248)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 4.8 2.1E+02 0.016 18.0 2.5 18 335-352 38-55 (100)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 4.6 5.6E+02 0.041 18.0 7.2 50 297-346 60-109 (199)
8 d2iuba2 f.17.3.1 (A:286-349) M 3.9 2.8E+02 0.02 15.7 2.3 12 340-351 51-62 (64)
9 d1pzqa_ a.34.3.1 (A:) Erythron 3.8 89 0.0065 17.4 -0.2 8 5-12 42-49 (60)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 3.0 1.9E+02 0.014 18.0 0.8 16 337-352 29-44 (91)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.51 E-value=44 Score=15.46 Aligned_cols=18 Identities=11% Similarity=-0.044 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018288 203 FGFLVCVGSTAGRALKSV 220 (358)
Q Consensus 203 ~G~~~~l~a~~~~a~~~v 220 (358)
.|.+.+-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577888888888887654
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.36 E-value=79 Score=20.35 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=3.3
Q ss_pred ccccccCC
Q 018288 351 KRSKVTTH 358 (358)
Q Consensus 351 ~~~~~~~~ 358 (358)
+++||+.|
T Consensus 96 ~~~~rr~h 103 (103)
T d1r3jc_ 96 REQERRGH 103 (103)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 33344444
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.62 E-value=5.1e+02 Score=18.70 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=21.5
Q ss_pred HHHHHhhHhhcCCcccchhhhhHHHHHHH
Q 018288 314 AVAAVVSVLIFRNPVTVMGMTGFAVTIMG 342 (358)
Q Consensus 314 ~~~~~~~~~~~ge~~~~~~~~G~~lii~g 342 (358)
+...+.+..+.|.+++....+|.++.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44555667788999999998888885443
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.60 E-value=6.7e+02 Score=20.06 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccch-HHHHHHHHHHHHH-HHHHHHHHHHhhcccCCCCCHHHHH
Q 018288 162 FTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFH-LFGFLVCVGSTAG-RALKSVVQGILLTSEAEKLHSMNLL 239 (358)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~-~~G~~~~l~a~~~-~a~~~v~~~~~~~~~~~~~~~~~~~ 239 (358)
++..+...+.++|++......- .+.|.+-++.+..-.+ +...+.+.++++. +-.+..+.+|.- -++..+....=
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vH 316 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVH 316 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc--cccccceEeeh
Confidence 3333333355667776654432 2335555543333333 3346666665543 333333333431 23344455555
Q ss_pred HHHHHHHHHH
Q 018288 240 LYMAPMSALI 249 (358)
Q Consensus 240 ~~~~~~~~~~ 249 (358)
....+.+.+.
T Consensus 317 g~~Gi~G~l~ 326 (383)
T d1u7ga_ 317 GVCGIVGCIM 326 (383)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 5555555443
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.29 E-value=5.8e+02 Score=19.04 Aligned_cols=61 Identities=13% Similarity=-0.054 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Q 018288 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGI 190 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv 190 (358)
+++++++.++...+....+..-+...+. ...+.+.++.++++.+|.-..|++-=.+++..+
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 4455555555544444333333333222 233445555677777776666665444444333
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.84 E-value=2.1e+02 Score=18.00 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHhhhhccc
Q 018288 335 GFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 335 G~~lii~g~~~~~~~~~~ 352 (358)
++.+++.|...|...|.|
T Consensus 38 ~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 334445566666654444
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.63 E-value=5.6e+02 Score=18.02 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=32.9
Q ss_pred HhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHh
Q 018288 297 TKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLY 346 (358)
Q Consensus 297 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~ 346 (358)
.+..-+.........-.+........++|.+++.....+.++.++...-+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 34455555555555555666666677889999988888877766555433
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.90 E-value=2.8e+02 Score=15.67 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=5.0
Q ss_pred HHHHHHhhhhcc
Q 018288 340 IMGVVLYSEAKK 351 (358)
Q Consensus 340 i~g~~~~~~~~~ 351 (358)
+.++.++.+.++
T Consensus 51 ~~~~~~~~~f~r 62 (64)
T d2iuba2 51 VIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHTTTTS
T ss_pred HHHHHHHHHHhc
Confidence 334444444443
No 9
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=3.83 E-value=89 Score=17.42 Aligned_cols=8 Identities=38% Similarity=1.091 Sum_probs=4.8
Q ss_pred cccccccC
Q 018288 5 QTWTTRRM 12 (358)
Q Consensus 5 ~~~~~~~~ 12 (358)
++|++||.
T Consensus 42 rrw~srr~ 49 (60)
T d1pzqa_ 42 RRWNSRRA 49 (60)
T ss_dssp HHHHHHHH
T ss_pred HHHhccCC
Confidence 46766654
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=1.9e+02 Score=18.02 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhccc
Q 018288 337 AVTIMGVVLYSEAKKR 352 (358)
Q Consensus 337 ~lii~g~~~~~~~~~~ 352 (358)
.+.+.|.+.|...|.|
T Consensus 29 ~v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 29 VIPAILMAVGFAWKYR 44 (91)
T ss_dssp TTHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHhhheeee
Confidence 3445666666655444
Done!