BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018289
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 260 QVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE 319
++ E+E+ + Y + EE LA+TR NS + +Q ++ C+Q V+ + QE
Sbjct: 149 KMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQ-KTQE 207
Query: 320 RGAKPFEFV-RTVPCY 334
+ K E V +T P Y
Sbjct: 208 KYEKVLEDVGKTTPQY 223
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 263 EIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGA 322
E+E+ + Y + EE LA+TR NS + +Q ++ C+Q V+ + QE+
Sbjct: 152 ELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQ-KTQEKYE 210
Query: 323 KPFEFV-RTVPCY 334
K E V +T P Y
Sbjct: 211 KVLEDVGKTTPQY 223
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 263 EIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGA 322
E+E+ + Y + EE LA+TR NS + +Q ++ C+Q V+ + QE+
Sbjct: 152 ELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQ-KTQEKYE 210
Query: 323 KPFEFV-RTVPCY 334
K E V +T P Y
Sbjct: 211 KVLEDVGKTTPQY 223
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 260 QVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE 319
++ E+E+ + Y + EE LA+TR NS + + ++ CRQ V+ + QE
Sbjct: 146 KMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQ-KTQE 204
Query: 320 RGAKPFEFV-RTVPCY 334
+ K E V +T P Y
Sbjct: 205 KYEKVLEDVGKTTPQY 220
>pdb|3NVL|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
pdb|3NVL|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
Length = 571
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 247 LALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVF 290
LA K LPRRK + V G GP + +YD +A T +++F
Sbjct: 25 LAAHKTLPRRKLVLVVLDGVGIGPRD-EYDAVHVAKTPLMDALF 67
>pdb|4SBV|A Chain A, The Refinement Of Southern Bean Mosaic Virus In Reciprocal
Space
pdb|4SBV|B Chain B, The Refinement Of Southern Bean Mosaic Virus In Reciprocal
Space
pdb|4SBV|C Chain C, The Refinement Of Southern Bean Mosaic Virus In Reciprocal
Space
Length = 260
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 279 WLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE----------RGAKPFEFV 328
W+AI T+ P T+ A G Q+DM D ++L G FV
Sbjct: 112 WVAIRYTYLPSCPTTTSGAIHMGFQYDMADTLPVSVNQLSNLKGYVTGPVWEGQSGLCFV 171
Query: 329 RTVPCYDASQSLSIGAFAGNSSE 351
C D S++++I SE
Sbjct: 172 NNTKCPDTSRAITIALDTNEVSE 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,467,410
Number of Sequences: 62578
Number of extensions: 499849
Number of successful extensions: 993
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 8
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)