BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018290
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 106 KVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNI--SNPDLIQIGQNLTIPLPCSCDD 163
+V ++++ + GLD A+++ +LK +NN+ S +++Q+ + I + C C D
Sbjct: 108 QVAQWSIRTEFGLD--AKSV---VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTD 162
Query: 164 VDNAKVVHY 172
NA V Y
Sbjct: 163 CANANVTWY 171
>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
Kinase
pdb|4EBZ|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
Kinase
Length = 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 126 FGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVD 165
F +L+Y NI + D IQ+G + +P PC C D
Sbjct: 39 FDPILRYNS-----NIKDKDRIQMGSRVLVPFPCECQPGD 73
>pdb|2L9Y|A Chain A, Solution Structure Of The Mocvnh-Lysm Module From The Rice
Blast Fungus Magnaporthe Oryzae Protein (Mgg_03307)
Length = 167
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 111 TVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIP 156
TV++ D L I R + +I NNI N DLI GQ L +P
Sbjct: 66 TVQQGDTLRDIGRRF---DCDFHEIARRNNIQNEDLIYPGQVLQVP 108
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 226 KADSFDNYLRVANG---TYTFTANSCVKCQCDATNNWTLQCKPSQ 267
KAD+ + + +AN +ANS + QC NNW L PS+
Sbjct: 473 KADTNRDRIDIANARAKKLIDSANSALALQCIKVNNWDLFFSPSE 517
>pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
Length = 330
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 136 VEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDR 193
+ + +I+N DL+++G+ + +DVD + H +EE + F + QK TD+
Sbjct: 58 IASESITNDDLLKLGKR--VAELADSNDVDGIVITHGTDTLEETAYFLNLVQK--TDK 111
>pdb|4PGA|A Chain A, Glutaminase-asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-asparaginase From Pseudomonas 7a
Length = 337
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 136 VEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDR 193
+ + +I+N DL+++G+ + +DVD + H +EE + F + QK TD+
Sbjct: 65 IASESITNDDLLKLGKR--VAELADSNDVDGIVITHGTDTLEETAYFLNLVQK--TDK 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,504,756
Number of Sequences: 62578
Number of extensions: 381978
Number of successful extensions: 904
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 9
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)