Query 018290
Match_columns 358
No_of_seqs 330 out of 2130
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 100.0 5.2E-37 1.8E-41 280.7 17.9 183 36-228 3-198 (212)
2 4eby_A Chitin elicitor recepto 99.8 1.9E-21 6.6E-26 177.5 10.7 108 107-219 9-128 (212)
3 2l9y_A CVNH-LYSM lectin; carbo 99.5 7.2E-16 2.5E-20 135.6 0.8 94 106-202 61-156 (167)
4 2djp_A Hypothetical protein SB 99.4 6.9E-14 2.4E-18 107.2 4.9 68 149-226 3-70 (77)
5 2gu1_A Zinc peptidase; alpha/b 99.4 1.6E-13 5.5E-18 134.5 7.4 110 106-218 6-152 (361)
6 2gu1_A Zinc peptidase; alpha/b 99.3 3.7E-12 1.3E-16 124.8 7.8 115 39-157 5-152 (361)
7 2l9y_A CVNH-LYSM lectin; carbo 99.3 2.6E-13 8.8E-18 119.3 -1.0 93 40-140 61-155 (167)
8 1e0g_A Membrane-bound lytic mu 99.2 5.2E-12 1.8E-16 87.4 4.5 46 172-219 3-48 (48)
9 2djp_A Hypothetical protein SB 99.1 2.2E-11 7.5E-16 93.1 3.6 62 85-159 3-64 (77)
10 1e0g_A Membrane-bound lytic mu 99.0 5.5E-10 1.9E-14 77.0 5.7 45 108-157 3-47 (48)
11 4a1k_A Putative L, D-transpept 98.4 2.3E-07 7.9E-12 81.0 4.4 46 172-218 3-48 (165)
12 4a1k_A Putative L, D-transpept 98.0 6.1E-06 2.1E-10 72.0 4.9 46 108-157 3-48 (165)
13 3slu_A M23 peptidase domain pr 97.5 0.00035 1.2E-08 68.4 9.8 111 105-218 12-160 (371)
14 3slu_A M23 peptidase domain pr 97.3 0.00076 2.6E-08 66.0 9.1 117 37-157 10-160 (371)
15 2k1g_A Lipoprotein SPR; soluti 91.5 0.0038 1.3E-07 52.4 -5.9 59 235-297 15-74 (135)
16 2jyx_A Lipoprotein SPR; soluti 78.1 0.045 1.5E-06 45.7 -6.2 61 233-297 13-74 (136)
17 3gt2_A Putative uncharacterize 76.6 0.047 1.6E-06 45.8 -6.5 60 234-297 24-96 (142)
18 3pbi_A Invasion protein; pepti 76.3 0.078 2.7E-06 47.8 -5.5 59 235-297 94-165 (214)
19 3m1u_A Putative gamma-D-glutam 75.7 0.079 2.7E-06 52.7 -6.2 58 233-295 284-341 (434)
20 3ne0_A Resuscitation promoting 73.7 0.059 2E-06 48.6 -7.0 61 233-297 92-165 (214)
21 3npf_A Putative dipeptidyl-pep 73.4 0.092 3.2E-06 49.4 -6.1 64 233-297 163-227 (306)
22 3h41_A NLP/P60 family protein; 72.6 0.091 3.1E-06 49.8 -6.4 61 233-297 196-256 (311)
23 2hbw_A NLP/P60 protein; NLP/P6 71.5 0.082 2.8E-06 48.3 -6.7 56 238-297 112-167 (235)
24 4hpe_A Putative cell WALL hydr 68.6 0.082 2.8E-06 50.2 -7.6 62 232-297 193-255 (308)
25 4fdy_A Similar to lipoprotein, 68.5 0.083 2.8E-06 50.3 -7.6 62 232-297 197-259 (313)
26 2glo_A Brinker CG9653-PA; prot 59.8 4.9 0.00017 27.7 2.2 26 176-201 18-47 (59)
27 2lfc_A Fumarate reductase, fla 50.6 9.3 0.00032 32.0 2.9 28 175-202 91-122 (160)
28 2elh_A CG11849-PA, LD40883P; s 47.6 9.4 0.00032 28.4 2.2 24 177-200 36-59 (87)
29 1tc3_C Protein (TC3 transposas 44.9 17 0.00058 22.7 2.9 24 177-200 19-42 (51)
30 2jn6_A Protein CGL2762, transp 43.1 14 0.00048 27.7 2.6 22 179-200 23-44 (97)
31 2jrt_A Uncharacterized protein 40.1 18 0.00063 27.8 2.8 28 174-201 44-71 (95)
32 1jko_C HIN recombinase, DNA-in 38.4 15 0.00051 23.4 1.8 24 176-199 18-41 (52)
33 2glo_A Brinker CG9653-PA; prot 32.5 30 0.001 23.5 2.7 23 48-71 20-46 (59)
34 2rn7_A IS629 ORFA; helix, all 30.9 19 0.00066 27.5 1.6 21 180-200 31-51 (108)
35 2lfc_A Fumarate reductase, fla 28.2 27 0.00092 29.1 2.1 27 46-72 92-121 (160)
36 2x48_A CAG38821; archeal virus 28.2 43 0.0015 21.9 2.9 23 177-199 29-51 (55)
37 2jrt_A Uncharacterized protein 28.0 40 0.0014 25.9 2.9 26 46-72 46-71 (95)
38 2zp2_A Kinase A inhibitor; KIP 25.2 2.9E+02 0.0098 22.7 8.2 89 173-263 8-100 (141)
39 2elh_A CG11849-PA, LD40883P; s 24.5 47 0.0016 24.4 2.7 23 47-70 36-58 (87)
40 1rr7_A Middle operon regulator 24.2 47 0.0016 26.9 2.9 21 179-199 92-112 (129)
41 1pdn_C Protein (PRD paired); p 22.5 45 0.0015 25.3 2.4 23 177-199 31-53 (128)
42 2jn6_A Protein CGL2762, transp 21.4 49 0.0017 24.5 2.3 22 49-71 23-44 (97)
43 1wqb_A Aptotoxin VII; spider'S 21.1 44 0.0015 19.9 1.4 15 273-287 12-26 (32)
44 4ank_A Transthyretin; hormone 20.8 22 0.00077 29.7 0.2 20 1-20 1-20 (147)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=100.00 E-value=5.2e-37 Score=280.72 Aligned_cols=183 Identities=23% Similarity=0.333 Sum_probs=155.7
Q ss_pred cccC-ccEEEECCCCCCHHHHHHHhCCCcH--------HHHHhcC-CCCCCCCCCCcCCCCCeEEecccccCCCCCccCC
Q 018290 36 ARCQ-ALVGYLPPNKTTISEIQSLFTVKNL--------RSILGAN-NFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSD 105 (358)
Q Consensus 36 ~~C~-a~~~YtV~~GdTL~~IA~~fgvs~l--------~~L~~~N-~L~~~~~~~~~L~~Gq~L~IP~~~~c~~~~~~s~ 105 (358)
.+|+ ++..|+|++||||+.||++|+++ + ++|+++| +|. +.+.|.+||.|+||.+|.|.++... .
T Consensus 3 ~~C~~a~~~Y~V~~GDTL~~IA~~~~vs-v~~~~~~~~~~I~~~Np~l~----~~~~l~~Gq~L~IP~~~~~~~~~~~-~ 76 (212)
T 4eby_A 3 TSCPLALASYYLENGTTLSVINQNLNSS-IAPYDQINFDPILRYNSNIK----DKDRIQMGSRVLVPFPCECQPGDFL-G 76 (212)
T ss_dssp CCCSCEEEEEECCTTCCHHHHHHHTCCS-SSCCCSSCCHHHHTTCTTCS----CTTSCCTTCEEEEEECCEEETTTEE-E
T ss_pred CCCccceEEEEeCCCCCHHHHHHHHCCC-chhccccCHHHHHHhccCCC----CcCccCCCCEEEEeccccccCCccc-c
Confidence 3899 99999999999999999999999 6 9999999 774 3478999999999999888654321 2
Q ss_pred CcceEEEcCCCcHHHHH-HHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECCCCCcCCCCccc--cceeeeeeecCChH
Q 018290 106 KVPVYTVKKDDGLDFIA-RTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAK--VVHYAHVVEEGSSF 182 (358)
Q Consensus 106 ~~~~YtV~~GDTL~~IA-~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~~~~~~~~~~~--~~~~~Y~V~~GDTL 182 (358)
....|+|++||||+.|| ++ |++++++++|+++|++ +++.|++||+|.||..+.|+...... ....+|+|++||||
T Consensus 77 ~~~~Y~V~~GDTL~~IA~~~-y~~lvt~~~L~~~N~~-~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL 154 (212)
T 4eby_A 77 HNFSYSVRQEDTYERVAISN-YANLTTMESLQARNPF-PATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSL 154 (212)
T ss_dssp EEEEEECCTTCCHHHHHHTT-TTTSSCHHHHHHHCCS-CTTCCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCH
T ss_pred CceEEEecCCCcHHHHHHHh-cCCCCCHHHHHHhcCC-CcccCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcH
Confidence 34689999999999999 67 9999999999999994 55899999999999988776543222 23468999999999
Q ss_pred HHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEECCCCCCCCCCCC
Q 018290 183 ALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKAD 228 (358)
Q Consensus 183 ~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP~~~~~s~~~~~ 228 (358)
|+||++||+++++|++||++.+ ..+.+|+ |+||.+.++..+++.
T Consensus 155 ~~IA~~fgvsv~~L~~~N~~~~-~~~~~g~-l~IP~~~~~~~~~~~ 198 (212)
T 4eby_A 155 SSIARSSGVSADILQRYNPGVN-FNSGNGI-VYVPGRDPNGAFPPF 198 (212)
T ss_dssp HHHHHHHTSCHHHHHHHSTTCC-TTSCSSE-EEEECCCTTSCCCCC
T ss_pred HHHHHHHCcCHHHHHHhcCCCc-cCCCCCE-EEecCCCCCCccCCc
Confidence 9999999999999999999876 4555554 999999998888765
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.85 E-value=1.9e-21 Score=177.54 Aligned_cols=108 Identities=21% Similarity=0.425 Sum_probs=94.6
Q ss_pred cceEEEcCCCcHHHHHHHHhCCCccH--------HHHHHhc-CCCCCCccCCCcEEEECCCCCcCCCCccccceeeeeee
Q 018290 107 VPVYTVKKDDGLDFIARTIFGQLLKY--------QKIVEAN-NISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVE 177 (358)
Q Consensus 107 ~~~YtV~~GDTL~~IA~~~ygglvs~--------~~L~~~N-~l~~~~~L~~Gq~L~IP~~~~~~~~~~~~~~~~~Y~V~ 177 (358)
...|+|++||||+.||++ |+ +++ ++|+++| ++.+++.|++||+|.||.+|.|.... .......|+|+
T Consensus 9 ~~~Y~V~~GDTL~~IA~~-~~--vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~-~~~~~~~Y~V~ 84 (212)
T 4eby_A 9 LASYYLENGTTLSVINQN-LN--SSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGD-FLGHNFSYSVR 84 (212)
T ss_dssp EEEEECCTTCCHHHHHHH-TC--CSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTT-EEEEEEEEECC
T ss_pred eEEEEeCCCCCHHHHHHH-HC--CCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCc-cccCceEEEec
Confidence 458999999999999999 99 998 9999999 78777899999999999988775321 12234689999
Q ss_pred cCChHHHHH-HHhC--CCHHHHhhhhCCCCCCCcCCCCeEEECCC
Q 018290 178 EGSSFALIA-QKFG--TDRDTLMKLNGIHDDSKLIAGEPLDVPLK 219 (358)
Q Consensus 178 ~GDTL~~IA-~kyg--vt~~~L~~~N~l~~~~~l~~Gq~L~IP~~ 219 (358)
+|||||.|| ++|+ +++++|+++|++ +++.|++||+|.||..
T Consensus 85 ~GDTL~~IA~~~y~~lvt~~~L~~~N~~-~~~~l~~Gq~L~IP~~ 128 (212)
T 4eby_A 85 QEDTYERVAISNYANLTTMESLQARNPF-PATNIPLSATLNVLVN 128 (212)
T ss_dssp TTCCHHHHHHTTTTTSSCHHHHHHHCCS-CTTCCCTTCEEEEEEE
T ss_pred CCCcHHHHHHHhcCCCCCHHHHHHhcCC-CcccCCCCCEEEEcCC
Confidence 999999999 7999 999999999995 5689999999999975
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.54 E-value=7.2e-16 Score=135.63 Aligned_cols=94 Identities=24% Similarity=0.279 Sum_probs=78.4
Q ss_pred CcceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECCCCCcCC--CCccccceeeeeeecCChHH
Q 018290 106 KVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDD--VDNAKVVHYAHVVEEGSSFA 183 (358)
Q Consensus 106 ~~~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~~~~~~--~~~~~~~~~~Y~V~~GDTL~ 183 (358)
....|+|++||||+.||++ |+ +++.+|+++|++.+++.|++||+|.||.....+. ..........|+|++||||+
T Consensus 61 ~~~~y~V~~GDTL~~IA~~-~~--~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL~ 137 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRR-FD--CDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVLE 137 (167)
T ss_dssp SCEEEEECTTCCHHHHHHH-TT--CCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEEE
T ss_pred CCceEEECCCCcHHHHHHH-cC--CCHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCChH
Confidence 4569999999999999999 98 9999999999999999999999999997653211 11111234679999999999
Q ss_pred HHHHHhCCCHHHHhhhhCC
Q 018290 184 LIAQKFGTDRDTLMKLNGI 202 (358)
Q Consensus 184 ~IA~kygvt~~~L~~~N~l 202 (358)
+||++||.+++..+.+|..
T Consensus 138 aIA~r~G~~v~s~i~Ln~~ 156 (167)
T 2l9y_A 138 AELRYSGGWNRSRIYLDEH 156 (167)
T ss_dssp EEEEETTEEEEEEECGGGT
T ss_pred HHHHHcCCceEEEEEcccc
Confidence 9999999998888888864
No 4
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.9e-14 Score=107.16 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCcEEEECCCCCcCCCCccccceeeeeeecCChHHHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEECCCCCCCCCC
Q 018290 149 IGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIK 226 (358)
Q Consensus 149 ~Gq~L~IP~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP~~~~~s~~~ 226 (358)
.||.+.+|... ....|+|++|||||+||++|++++++|+++|++.+++.|++||+|+||.........
T Consensus 3 ~Gq~l~ip~~~----------~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~~~~~~~ 70 (77)
T 2djp_A 3 SGSSGCSPVRE----------RRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLF 70 (77)
T ss_dssp CCCCCCCCCCE----------EEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEECCSCCSS
T ss_pred CCcEeeccCCC----------CcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCCCCCCcC
Confidence 58888888532 346899999999999999999999999999999877899999999999876655443
No 5
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.42 E-value=1.6e-13 Score=134.52 Aligned_cols=110 Identities=23% Similarity=0.290 Sum_probs=86.5
Q ss_pred CcceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCC----CCccCCCcEEEECCCCCcCC------------------
Q 018290 106 KVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISN----PDLIQIGQNLTIPLPCSCDD------------------ 163 (358)
Q Consensus 106 ~~~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~----~~~L~~Gq~L~IP~~~~~~~------------------ 163 (358)
.+..|+|++||||+.|+++ |+ ++.++|+++|++.. .+.|++||+|.||.......
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r-~g--vs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~ 82 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQ-LG--VPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRE 82 (361)
T ss_dssp -CEEEECCTTCCHHHHHHH-TT--CCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEEC
T ss_pred CceEEEECCCCcHHHHHHH-cC--CCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEec
Confidence 3568999999999999999 99 99999999998653 46899999999996432100
Q ss_pred CCc----------cccceeeeeeecCChHHHHHHHhCCCHHHHhhhhCCCCC-----CCcCCCCeEEECC
Q 018290 164 VDN----------AKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDD-----SKLIAGEPLDVPL 218 (358)
Q Consensus 164 ~~~----------~~~~~~~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~~~-----~~l~~Gq~L~IP~ 218 (358)
..+ .......|.|+.|||||.||++||+++++|++||++... ..|++||+|.|+.
T Consensus 83 ~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~ 152 (361)
T 2gu1_A 83 NDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILV 152 (361)
T ss_dssp TTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEE
T ss_pred CCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEE
Confidence 000 001234688999999999999999999999999987543 4699999999975
No 6
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.28 E-value=3.7e-12 Score=124.81 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=86.9
Q ss_pred CccEEEECCCCCCHHHHHHHhCCCcHHHHHhcCCCCCCCCCCCcCCCCCeEEecccccCC--------------------
Q 018290 39 QALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICS-------------------- 98 (358)
Q Consensus 39 ~a~~~YtV~~GdTL~~IA~~fgvs~l~~L~~~N~L~~~~~~~~~L~~Gq~L~IP~~~~c~-------------------- 98 (358)
..|..|+|++||||+.|+++||++ .++|.++|++.....+.+.|++||.|+||......
T Consensus 5 ~~~~~~~Vk~GDTL~~Ia~r~gvs-~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~ 83 (361)
T 2gu1_A 5 PKRIHYMVKVGDTLSGIFAQLGVP-YSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTREN 83 (361)
T ss_dssp --CEEEECCTTCCHHHHHHHTTCC-HHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECT
T ss_pred CCceEEEECCCCcHHHHHHHcCCC-HHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecC
Confidence 357899999999999999999999 59999999865211224689999999999753210
Q ss_pred CCCcc--------CCCcceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCCC-----CccCCCcEEEECC
Q 018290 99 NGTGV--------SDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNP-----DLIQIGQNLTIPL 157 (358)
Q Consensus 99 ~~~~~--------s~~~~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~~-----~~L~~Gq~L~IP~ 157 (358)
++... ......|+++.||||+.||++ || ++.++|+++|++... ..|++||++.|+.
T Consensus 84 ~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~-~G--vs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~ 152 (361)
T 2gu1_A 84 DGSFSYDFQEISGEWREILFSGEINGSFSVSARR-VG--LTSSQVANITQVMKDKIDFSRSLRAGDRFDILV 152 (361)
T ss_dssp TSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHH-TT--CCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEE
T ss_pred CCcceeeecccCceEEEEEEEEEECCcHHHHHHH-cC--CCHHHHHHHHHhhcccccccccCCCCCEEEEEE
Confidence 00000 011236889999999999999 99 999999999987543 4699999999985
No 7
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.27 E-value=2.6e-13 Score=119.31 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=73.4
Q ss_pred ccEEEECCCCCCHHHHHHHhCCCcHHHHHhcCCCCCCCCCCCcCCCCCeEEecccccCCC--CCccCCCcceEEEcCCCc
Q 018290 40 ALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSN--GTGVSDKVPVYTVKKDDG 117 (358)
Q Consensus 40 a~~~YtV~~GdTL~~IA~~fgvs~l~~L~~~N~L~~~~~~~~~L~~Gq~L~IP~~~~c~~--~~~~s~~~~~YtV~~GDT 117 (358)
+-..|+|++|||||.||++|+++ +.+|+++|+|. +.+.|++||+|+||....... ..........|+|++||+
T Consensus 61 ~~~~y~V~~GDTL~~IA~~~~~~-~~~l~~~N~~~----~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~Gdt 135 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRRFDCD-FHEIARRNNIQ----NEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKV 135 (167)
T ss_dssp SCEEEEECTTCCHHHHHHHTTCC-HHHHHHHHTCC----GGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTE
T ss_pred CCceEEECCCCcHHHHHHHcCCC-HHHHHHHcCCC----CcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCC
Confidence 45689999999999999999999 59999999876 458999999999997543211 011112235789999999
Q ss_pred HHHHHHHHhCCCccHHHHHHhcC
Q 018290 118 LDFIARTIFGQLLKYQKIVEANN 140 (358)
Q Consensus 118 L~~IA~~~ygglvs~~~L~~~N~ 140 (358)
|+.||++ || .+.+.+..+|.
T Consensus 136 L~aIA~r-~G--~~v~s~i~Ln~ 155 (167)
T 2l9y_A 136 LEAELRY-SG--GWNRSRIYLDE 155 (167)
T ss_dssp EEEEEEE-TT--EEEEEEECGGG
T ss_pred hHHHHHH-cC--CceEEEEEccc
Confidence 9999999 88 77777666665
No 8
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.24 E-value=5.2e-12 Score=87.42 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=43.0
Q ss_pred eeeeeecCChHHHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEECCC
Q 018290 172 YAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLK 219 (358)
Q Consensus 172 ~~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP~~ 219 (358)
..|+|++||||++||++|++++++|+++|+ +++.|++||+|.||..
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~--~~~~l~~G~~l~ip~~ 48 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS--DTANLQPGDKLTLFVK 48 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS--CGGGCCTTEEEECCCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC--CCCcCCcCCEEEEecC
Confidence 579999999999999999999999999999 6689999999999963
No 9
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=93.09 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCCeEEecccccCCCCCccCCCcceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECCCC
Q 018290 85 AQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPC 159 (358)
Q Consensus 85 ~Gq~L~IP~~~~c~~~~~~s~~~~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~~ 159 (358)
.||.+.||.. .....|+|++||||+.||++ |+ +++++|+++|++.+++.|++||+|.||...
T Consensus 3 ~Gq~l~ip~~----------~~~~~y~V~~GDTL~~IA~~-~~--~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 3 SGSSGCSPVR----------ERRLEHQLEPGDTLAGLALK-YG--VTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp CCCCCCCCCC----------EEEEEECCCTTCCHHHHHHH-HT--CCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred CCcEeeccCC----------CCcEEEEECCCCcHHHHHHH-HC--cCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 5888988853 12468999999999999999 99 999999999999877899999999999743
No 10
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=98.99 E-value=5.5e-10 Score=77.04 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=42.3
Q ss_pred ceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECC
Q 018290 108 PVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPL 157 (358)
Q Consensus 108 ~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~ 157 (358)
..|+|++||||+.||++ |+ +++++|+++|+ +++.|++||+|.||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~-~~--~~~~~l~~~N~--~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKR-HG--VNIKDVMRWNS--DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHH-HT--CCHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHH-HC--cCHHHHHHhCC--CCCcCCcCCEEEEec
Confidence 58999999999999999 99 99999999999 668999999999995
No 11
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.36 E-value=2.3e-07 Score=81.02 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=42.6
Q ss_pred eeeeeecCChHHHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEECC
Q 018290 172 YAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPL 218 (358)
Q Consensus 172 ~~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP~ 218 (358)
.+|+||+||||++||++|++...+|+++|+..++ .|.+|++|.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRISTAALLQANPSLQA-GLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGG-CCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCC-ccCCCccccCcc
Confidence 6899999999999999999999999999998775 579999999995
No 12
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=97.96 E-value=6.1e-06 Score=71.95 Aligned_cols=46 Identities=30% Similarity=0.431 Sum_probs=42.0
Q ss_pred ceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECC
Q 018290 108 PVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPL 157 (358)
Q Consensus 108 ~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~ 157 (358)
.+|+|++||||..||++ |+ +...+|+++|+..++ .+.+|+++.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~-f~--~g~~~l~~aNp~vd~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAAD-FR--ISTAALLQANPSLQA-GLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHH-TT--CCHHHHHHHCGGGGG-CCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHH-hC--CCHHHHHHhCccCCC-ccCCCccccCcc
Confidence 58999999999999999 99 999999999997664 578999999985
No 13
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.49 E-value=0.00035 Score=68.36 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=77.2
Q ss_pred CCcceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCC----CCCccCCCcEEEECCCCCcCC--------CCcc-----
Q 018290 105 DKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNIS----NPDLIQIGQNLTIPLPCSCDD--------VDNA----- 167 (358)
Q Consensus 105 ~~~~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~----~~~~L~~Gq~L~IP~~~~~~~--------~~~~----- 167 (358)
..+..|+|++||||..|-++ +| ++..++.+++... +...|++||+|.+........ ....
T Consensus 12 ~~W~~~~V~~GDTL~~IL~r-~G--ls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v~ 88 (371)
T 3slu_A 12 AYWVQEAVQPGDSLADVLAR-SG--MARDEIARITEKYGGEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVA 88 (371)
T ss_dssp CEEEEEECCTTCCHHHHHHH-TT--CCHHHHHHHHTTC------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEEE
T ss_pred CceEEEEECCCCcHHHHHHH-cC--CCHHHHHHHHHhccccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEEE
Confidence 34568999999999999999 89 9999999887643 446899999999965321100 0000
Q ss_pred ----ccc-------------eeeeeeecCChHHHHHHHhCCCHHHHhhhhCCC----CCCCcCCCCeEEECC
Q 018290 168 ----KVV-------------HYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIH----DDSKLIAGEPLDVPL 218 (358)
Q Consensus 168 ----~~~-------------~~~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~----~~~~l~~Gq~L~IP~ 218 (358)
... ...+.+.-.++|+..|++.|++.+.+++++.+- |-..|++|+.+.|.-
T Consensus 89 i~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~ 160 (371)
T 3slu_A 89 LEKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIY 160 (371)
T ss_dssp EEEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEE
T ss_pred EEecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEE
Confidence 000 011223347899999999999998888887542 224599999988853
No 14
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.27 E-value=0.00076 Score=65.96 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=79.1
Q ss_pred ccCccEEEECCCCCCHHHHHHHhCCCcHHHHHhcCCCCCCCCCCCcCCCCCeEEecccccCC----------CCCcc---
Q 018290 37 RCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICS----------NGTGV--- 103 (358)
Q Consensus 37 ~C~a~~~YtV~~GdTL~~IA~~fgvs~l~~L~~~N~L~~~~~~~~~L~~Gq~L~IP~~~~c~----------~~~~~--- 103 (358)
.-..|..|+|++||||..|-+++|++. .++.+++.......+...|++||.|.+.....-. +....
T Consensus 10 ~~~~W~~~~V~~GDTL~~IL~r~Gls~-~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v~ 88 (371)
T 3slu_A 10 QTAYWVQEAVQPGDSLADVLARSGMAR-DEIARITEKYGGEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVA 88 (371)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHTTCCH-HHHHHHHTTC------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEEE
T ss_pred CCCceEEEEECCCCcHHHHHHHcCCCH-HHHHHHHHhccccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEEE
Confidence 445789999999999999999999995 8888887643222345789999999997643210 00000
Q ss_pred -CCCcceEE----------------EcCCCcHHHHHHHHhCCCccHHHHHHhcCCC----CCCccCCCcEEEECC
Q 018290 104 -SDKVPVYT----------------VKKDDGLDFIARTIFGQLLKYQKIVEANNIS----NPDLIQIGQNLTIPL 157 (358)
Q Consensus 104 -s~~~~~Yt----------------V~~GDTL~~IA~~~ygglvs~~~L~~~N~l~----~~~~L~~Gq~L~IP~ 157 (358)
......|+ ..-.++|+..+++ .| ++.+.+++++.+. |...|++|+++.|..
T Consensus 89 i~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~-ag--l~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~ 160 (371)
T 3slu_A 89 LEKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLAR-AE--VPVEIRESLSGIFAGRFSLDGLKEGDAVRLIY 160 (371)
T ss_dssp EEEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHH-TT--CCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEE
T ss_pred EEecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHH-cC--CCHHHHHHHHHHHccCcCHHHcCCCCEEEEEE
Confidence 00001222 2237899999999 78 9988888887643 223699999999864
No 15
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=91.54 E-value=0.0038 Score=52.41 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=46.9
Q ss_pred eecCceEEEeeCCceeeeeCCCCceeEEecc-CCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 235 RVANGTYTFTANSCVKCQCDATNNWTLQCKP-SQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 235 ~v~~g~Y~~~a~~~~~~~c~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
...+.+|.|++..+.+||||| +++.+|-+. ....|+++.+||..+.... -++|+.||+.
T Consensus 15 ~~lG~PY~wGG~~~~G~DCSG-lv~~vy~~~~Gi~lPr~s~~q~~~g~~V~---~~~l~pGDLv 74 (135)
T 2k1g_A 15 DWKGVRYRLGGSTKKGIDCSG-FVQRTFREQFGLELPRSTYEQQEMGKSVS---RSNLRTGDLV 74 (135)
T ss_dssp HHTTCCCCSSCCBTTBCCHHH-HHHHHHHHTTCCCCCSSHHHHGGGSEEEC---GGGCCTTEEE
T ss_pred HHCCCCccCCCcCCCCceeHH-HHHHHHHHcCCCCCCCCHHHHhhCCcEec---HHHccCCcEE
Confidence 467889999999999999998 888888765 4456788888887665443 2569999986
No 16
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=78.07 E-value=0.045 Score=45.66 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=46.1
Q ss_pred ceeecCceEEEeeCCceeeeeCCCCceeEEec-cCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 233 YLRVANGTYTFTANSCVKCQCDATNNWTLQCK-PSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 233 ~l~v~~g~Y~~~a~~~~~~~c~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
.....+.+|.|++..+.+||||| +.+.+|.+ .....++++.+||...... .-+.++.||+.
T Consensus 13 A~~~lG~pY~~Gg~~~~g~DCSG-lv~~~~~~~~Gi~lpr~s~~q~~~g~~v---~~~~l~pGDLv 74 (136)
T 2jyx_A 13 YADWKGVRYRLGGSTKKGIDCSG-FVQRTFREQFGLELPRSTYEQQEMGKSV---SRSNLRTGDLV 74 (136)
T ss_dssp HHHHSSCCBCTTCEETTEECHHH-HHHHHHHHHTCCCCCSSHHHHGGGSEEC---CTTTCCTTEEE
T ss_pred HHHhCCCCccCCCCCCCCeEHHH-HHHHHHHHhcCCCCCCCHHHHHhcCeEc---chHhCCCCCEE
Confidence 34567889999999999999998 99999985 4555677777777654333 23569999986
No 17
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=76.57 E-value=0.047 Score=45.83 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=45.2
Q ss_pred eeecCceEEEeeC-------------CceeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 234 LRVANGTYTFTAN-------------SCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 234 l~v~~g~Y~~~a~-------------~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
+...+.+|.|++. ...+||||+ +++.+|-+.....|+++.+||.....+. -++|+.||+.
T Consensus 24 ~~~lG~pY~wGG~~~~gp~~g~~~g~~~~g~DCSG-lv~~~~~~~Gi~lpr~s~~q~~~g~~v~---~~~~~pGDlv 96 (142)
T 3gt2_A 24 LSQRGVPFSWAGGGINGPTRGTGTGANTVGFDASG-LMQYAYAGAGIKLPRSSGAMYRVGQKIL---PQQARKGDLI 96 (142)
T ss_dssp HTTTTCBBCTTCCBTTBCEECSGGGTTCEEBCHHH-HHHHHHHTTTCCCCSSHHHHTTSSEEEC---GGGCCTTCEE
T ss_pred HHHCCCCeeCCCccCCCCcccccccCCCCcEEcHH-HHHHHHHHcCCCCCCCHHHHHhhCceec---hhhCCCCCEE
Confidence 3566778999884 234899998 9999998877777888888886654432 2569999986
No 18
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=76.29 E-value=0.078 Score=47.78 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=45.7
Q ss_pred eecCceEEEeeCCc-------------eeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 235 RVANGTYTFTANSC-------------VKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 235 ~v~~g~Y~~~a~~~-------------~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
...+.+|.|++... .+||||| +++.+|.+.....++++.+||..+..+. -++++.||+.
T Consensus 94 ~~lG~PY~wGG~~~~gP~~g~~~g~~~~G~DCSG-lV~~vy~~~Gi~LPr~s~~q~~~g~~V~---~~~lqpGDLV 165 (214)
T 3pbi_A 94 SQMGVPYSWGGGSLQGPSKGVDSGANTVGFDCSG-LVRYAFAGVGVLIPRFSGDQYNAGRHVP---PAEAKRGDLI 165 (214)
T ss_dssp HTTTCBBCTTCCCSSSCEECSGGGTTCEEBCHHH-HHHHHHHTTTCCCCSSHHHHTTSSEEEC---GGGCCTTCEE
T ss_pred HHCCCCccCCCcCCCCCcccccccCCcCceECHH-HHHHHHHHhCCCCCccHHHHHhcCeeec---hhhCCCCCEE
Confidence 56788899998765 5899998 9999998877677888888886554332 2569999986
No 19
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=75.70 E-value=0.079 Score=52.71 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=46.4
Q ss_pred ceeecCceEEEeeCCceeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeec
Q 018290 233 YLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGN 295 (358)
Q Consensus 233 ~l~v~~g~Y~~~a~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~ 295 (358)
.....+.+|.|++... ++|||| +++.+|...+...|+++..|+.....+. -++|+.||
T Consensus 284 A~~~lG~PY~wGG~~~-g~DCSG-fv~~vy~~~Gi~lPR~s~~Q~~~g~~v~---~~~l~pGD 341 (434)
T 3m1u_A 284 GNRMMGQPYGWGGLYE-DRDCSS-TLRDLFTPFGLWLPRNSASQAKAGRYVD---IAKLDADD 341 (434)
T ss_dssp HHHHTTCBBCGGGGGG-CBCHHH-HHHHHHGGGTCCCCSSHHHHHTTSEEEE---CTTSCHHH
T ss_pred HHHhCCCCcccCCcCC-CCccHH-HHHHHHHHcCCCCCCCHHHHHhcCeecC---HHHCCCCc
Confidence 3467888999999998 999998 9999999988888899888885543332 25688887
No 20
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=73.67 E-value=0.059 Score=48.59 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=46.5
Q ss_pred ceeecCceEEEeeCC-------------ceeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 233 YLRVANGTYTFTANS-------------CVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 233 ~l~v~~g~Y~~~a~~-------------~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
.....+.+|.|++.+ ..+||||+ +++.+|.+.....++++..||..+..+. -++++.||+.
T Consensus 92 A~~~lG~PY~wGG~~~~GP~~g~~~g~~~~G~DCSG-lV~~vy~~~Gi~LPr~s~~q~~~g~~V~---~~~lqpGDLv 165 (214)
T 3ne0_A 92 GMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSG-LVLYSFAGVGIKLPHYSGSQYNLGRKIP---SSQMRRGDVI 165 (214)
T ss_dssp HHTTTTCBBCTTCCBTTBCEECSGGGTTCEEBCHHH-HHHHHHHTTTCCCCBSHHHHHTSSEEEE---GGGCCTTCEE
T ss_pred HHHHcCCCccCCCcCCCCCcccccccCCCCcEEcHH-HHHHHHHHcCCCCCCchHHHHhcCceec---hhhCCCCCEE
Confidence 345778899999876 56999998 9999998766667788777886654443 2569999986
No 21
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=73.42 E-value=0.092 Score=49.45 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=48.3
Q ss_pred ceeecCceEEEeeCCceeeeeCCCCceeEEeccCCcCCCCCCcCccccCcccc-CCCCcceeeccc
Q 018290 233 YLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLC-GDSESLSIGNTT 297 (358)
Q Consensus 233 ~l~v~~g~Y~~~a~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c-~~~~~~~~g~~~ 297 (358)
.....+.+|.|++..+.+||||| +++.+|.......|+++..||.....+.= ..-++|+.||+.
T Consensus 163 a~~~lG~pY~wGg~~~~g~DCSg-lv~~~~~~~Gi~lpr~s~~q~~~g~~v~~~~~~~~~~pGDLv 227 (306)
T 3npf_A 163 AYSMMGIPYLWAGTSSKGVDXSG-LVRTVLFMHDIIIPRDASQQAYVGEHIDIAPDFSNVKRGDLV 227 (306)
T ss_dssp HHTTTTCBBCTTCEETTEECHHH-HHHHHHHTTTEECCSSHHHHTTSSEEECCCTTCTTCCTTCEE
T ss_pred HHhhCCCceECCCcCCCCEechh-HHHHHHHHcCCcCCCCHHHHHhCCcEecccCccccCCCccEE
Confidence 34677899999999999999998 99999988766778888777755433321 112569999986
No 22
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=72.57 E-value=0.091 Score=49.81 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=47.7
Q ss_pred ceeecCceEEEeeCCceeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 233 YLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 233 ~l~v~~g~Y~~~a~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
.....+.+|.|++....+||||| +.+.+|...+...|+++..|+....... -++|+.||+.
T Consensus 196 A~~~lG~pY~wGg~~~~g~DCSg-lv~~~~~~~Gi~lpr~s~~q~~~g~~v~---~~~~~pGDlv 256 (311)
T 3h41_A 196 GKMFLGLPYIWAGTSGFGFDCSG-FTHTIYKSHGITIPRDSGPQSRNGVAVD---KEHLQKGDLI 256 (311)
T ss_dssp HHTTTTCBCCTTCEETTEECHHH-HHHHHHHTTTCCCCSSHHHHTTSSEEEC---GGGCCTTCEE
T ss_pred HHhhCCCCcCCCCCCCCCcChHH-HHHHHHHHcCCCCCCCHHHHHhCCEEEc---HHHCCCCCEE
Confidence 34678899999999999999998 9999998777777888777775543332 2569999986
No 23
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=71.47 E-value=0.082 Score=48.27 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=43.5
Q ss_pred CceEEEeeCCceeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 238 NGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 238 ~g~Y~~~a~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
+.+|.|++....+||||| +++.+|-......|+++..||..+.... -++|+.||+.
T Consensus 112 G~pY~wGG~~~~g~DCSG-lv~~~~~~~Gi~lPr~s~~q~~~g~~v~---~~~l~pGDLv 167 (235)
T 2hbw_A 112 SNYYLWGGTVGPNYDCSG-LMQAAFVSVGIWLPRDAYQQEAFTQAIT---IDELAPGDLV 167 (235)
T ss_dssp CCCCCTTCCSSSSCCHHH-HHHHHHHTTTCCCCSSHHHHHHHSEEEC---GGGCCTTCEE
T ss_pred CCCCCCCCcCCCCcCcHH-HHHHHHHHcCCCCCCCHHHHHHhCcccc---HhhCCCCCEE
Confidence 568999999888999998 9999998876667888777775443332 2568999986
No 24
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=68.57 E-value=0.082 Score=50.16 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=48.7
Q ss_pred cceeecCceEEEeeCCce-eeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 232 NYLRVANGTYTFTANSCV-KCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 232 ~~l~v~~g~Y~~~a~~~~-~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
......+.+|.|++..+. +||||| +++.+|.+.....|+++..||.....+. -+.|+.||+.
T Consensus 193 ~A~~~lG~PY~~Gg~~~~~g~DCSG-lv~~v~~~~Gi~lpr~s~~q~~~g~~v~---~~~l~pGDLv 255 (308)
T 4hpe_A 193 EALKYQGWKYVYGGSNPNTSFDCSG-LTQWCYGKAGISLPRTAQAQYDATQHLP---LSQAKAGDLV 255 (308)
T ss_dssp HHGGGTTCCCCTTCEETTTEECHHH-HHHHHHHHTTCCCCSSHHHHHHTSEEEC---GGGCCTTCEE
T ss_pred HHHhhCCCCccCCCCCCCCCEECHH-HHHHHHHHcCCCCCCCHHHHHhcCeeec---hhhCCCCCEE
Confidence 345677899999999984 999998 9999999877777888888886654332 2569999986
No 25
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=68.47 E-value=0.083 Score=50.32 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=49.2
Q ss_pred cceeecCceEEEeeCCc-eeeeeCCCCceeEEeccCCcCCCCCCcCccccCccccCCCCcceeeccc
Q 018290 232 NYLRVANGTYTFTANSC-VKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTT 297 (358)
Q Consensus 232 ~~l~v~~g~Y~~~a~~~-~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~~ 297 (358)
......+.+|.|++..+ .+||||| +++.+|.+.....|+++.+||..+..+. -+.|+.||+.
T Consensus 197 ~A~~~lG~PY~wGG~~p~~G~DCSG-lV~~vy~~~Gi~LPr~s~~q~~~g~~V~---~~~lqpGDLv 259 (313)
T 4fdy_A 197 EALKYEGFPYVFGGASPTTSFDCSG-LIQWVYDKAGISLPRVAQDQYDATQEIS---MEEAQAGDLI 259 (313)
T ss_dssp HHGGGTTCCBCTTCEETTTEECHHH-HHHHHHHHTTCCCCSSHHHHHHHSEEEC---TTTCCTTCEE
T ss_pred HHHHhcCCccccCCCCCCCCEEcHH-HHHHHHHHhCCCCCccHHHHHhcCceec---hhhCCCCCEE
Confidence 34567889999999998 6999998 9999998877677888888886654442 2569999986
No 26
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=59.76 E-value=4.9 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.1
Q ss_pred eecCCh----HHHHHHHhCCCHHHHhhhhC
Q 018290 176 VEEGSS----FALIAQKFGTDRDTLMKLNG 201 (358)
Q Consensus 176 V~~GDT----L~~IA~kygvt~~~L~~~N~ 201 (358)
+..|.+ +..||++|||+...|.+|=.
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 356778 99999999999999988843
No 27
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=50.64 E-value=9.3 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.0
Q ss_pred eeecCChHHHHHHHhCCCHHHH----hhhhCC
Q 018290 175 VVEEGSSFALIAQKFGTDRDTL----MKLNGI 202 (358)
Q Consensus 175 ~V~~GDTL~~IA~kygvt~~~L----~~~N~l 202 (358)
.+.++|||..+|++.|++.+.| .++|..
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQGY 122 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4678999999999999997654 588853
No 28
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=47.59 E-value=9.4 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.1
Q ss_pred ecCChHHHHHHHhCCCHHHHhhhh
Q 018290 177 EEGSSFALIAQKFGTDRDTLMKLN 200 (358)
Q Consensus 177 ~~GDTL~~IA~kygvt~~~L~~~N 200 (358)
..|.++..||++|||+...|.+|=
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999887763
No 29
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.91 E-value=17 Score=22.72 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.9
Q ss_pred ecCChHHHHHHHhCCCHHHHhhhh
Q 018290 177 EEGSSFALIAQKFGTDRDTLMKLN 200 (358)
Q Consensus 177 ~~GDTL~~IA~kygvt~~~L~~~N 200 (358)
..|-+...||+.+|++...+.++=
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 578899999999999999887763
No 30
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=43.07 E-value=14 Score=27.72 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.2
Q ss_pred CChHHHHHHHhCCCHHHHhhhh
Q 018290 179 GSSFALIAQKFGTDRDTLMKLN 200 (358)
Q Consensus 179 GDTL~~IA~kygvt~~~L~~~N 200 (358)
|.++..||++|||+...|.+|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 8899999999999999998874
No 31
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=40.15 E-value=18 Score=27.84 Aligned_cols=28 Identities=4% Similarity=0.024 Sum_probs=23.5
Q ss_pred eeeecCChHHHHHHHhCCCHHHHhhhhC
Q 018290 174 HVVEEGSSFALIAQKFGTDRDTLMKLNG 201 (358)
Q Consensus 174 Y~V~~GDTL~~IA~kygvt~~~L~~~N~ 201 (358)
+....+.++..+|++|+++.++|.+|-.
T Consensus 44 ~~~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 44 AVIHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp HHHTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3445567999999999999999999974
No 32
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=38.44 E-value=15 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.9
Q ss_pred eecCChHHHHHHHhCCCHHHHhhh
Q 018290 176 VEEGSSFALIAQKFGTDRDTLMKL 199 (358)
Q Consensus 176 V~~GDTL~~IA~kygvt~~~L~~~ 199 (358)
+..|.+...||+.+|++...+.++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 356889999999999999998876
No 33
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=32.55 E-value=30 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.9
Q ss_pred CCCC----HHHHHHHhCCCcHHHHHhcC
Q 018290 48 NKTT----ISEIQSLFTVKNLRSILGAN 71 (358)
Q Consensus 48 ~GdT----L~~IA~~fgvs~l~~L~~~N 71 (358)
.|.+ +.+||++|||+. ..|..|=
T Consensus 20 ~g~s~~~~~~~vA~~~gIs~-~tl~~W~ 46 (59)
T 2glo_A 20 NDNDCKGNQRATARKYNIHR-RQIQKWL 46 (59)
T ss_dssp HCTTTTTCHHHHHHHTTSCH-HHHHHHH
T ss_pred cCCCcchHHHHHHHHHCcCH-HHHHHHH
Confidence 4556 999999999995 8888873
No 34
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=30.90 E-value=19 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.0
Q ss_pred ChHHHHHHHhCCCHHHHhhhh
Q 018290 180 SSFALIAQKFGTDRDTLMKLN 200 (358)
Q Consensus 180 DTL~~IA~kygvt~~~L~~~N 200 (358)
.++..||++|||+...|.+|=
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHH
Confidence 689999999999999998874
No 35
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=28.18 E-value=27 Score=29.09 Aligned_cols=27 Identities=4% Similarity=-0.028 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhCCCc---HHHHHhcCC
Q 018290 46 PPNKTTISEIQSLFTVKN---LRSILGANN 72 (358)
Q Consensus 46 V~~GdTL~~IA~~fgvs~---l~~L~~~N~ 72 (358)
+.++|||.++|++.|++. .+.+.++|.
T Consensus 92 ~~kadTleeLA~~~gid~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIVVDELVQTVKNYQG 121 (160)
T ss_dssp SEECSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467899999999999995 245677884
No 36
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.17 E-value=43 Score=21.94 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.2
Q ss_pred ecCChHHHHHHHhCCCHHHHhhh
Q 018290 177 EEGSSFALIAQKFGTDRDTLMKL 199 (358)
Q Consensus 177 ~~GDTL~~IA~kygvt~~~L~~~ 199 (358)
..|-|...||+.+|++...+.++
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57889999999999999888765
No 37
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=28.00 E-value=40 Score=25.91 Aligned_cols=26 Identities=8% Similarity=-0.047 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHhCCCcHHHHHhcCC
Q 018290 46 PPNKTTISEIQSLFTVKNLRSILGANN 72 (358)
Q Consensus 46 V~~GdTL~~IA~~fgvs~l~~L~~~N~ 72 (358)
...+.++.++|++|+|+. ++|..|-.
T Consensus 46 ~~g~~s~~e~arry~Is~-s~i~~W~r 71 (95)
T 2jrt_A 46 IHGLITEREALDRYSLSE-EEFALWRS 71 (95)
T ss_dssp HTTSSCHHHHHHHTTCCH-HHHHHHHH
T ss_pred HcCCCCHHHHHHHhCCCH-HHHHHHHH
Confidence 356789999999999995 99998864
No 38
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=25.17 E-value=2.9e+02 Score=22.73 Aligned_cols=89 Identities=9% Similarity=0.072 Sum_probs=53.0
Q ss_pred eeeeecCChHHHHHHHhCCCHHHHhhhhCCCCCC----CcCCCCeEEECCCCCCCCCCCCccccceeecCceEEEeeCCc
Q 018290 173 AHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDS----KLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSC 248 (358)
Q Consensus 173 ~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~~~~----~l~~Gq~L~IP~~~~~s~~~~~~~d~~l~v~~g~Y~~~a~~~ 248 (358)
.|-=.-|.-|..+|+..|++++++.+.=--..-. -..||.....++...=...+.. .--..+|.|+-++++..+
T Consensus 8 ~Y~ge~g~DL~~vA~~~gls~~evi~~h~~~~y~V~~lGF~PGfpyL~~ld~~l~~PR~~--~pR~~vPaGsVgiaG~qt 85 (141)
T 2zp2_A 8 CYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRIAAPRKS--SPRPSIPAGSVGIAGLQT 85 (141)
T ss_dssp EESTTTCTTHHHHHHHTTCCHHHHHHHHTTCCEEEECCC--CCCCEEECCCGGGCBCCCS--SCCSCCCTTEEEEEBTEE
T ss_pred EcCCCCCCCHHHHHHHhCcCHHHHHHHHhCCCeEEEEEcCccCCceecCCCccccCCCCC--CCccccCCceEEEcCceE
Confidence 4544557899999999999999998876532211 2456666665554221111110 112467778877777765
Q ss_pred eeeeeCCCCceeEEe
Q 018290 249 VKCQCDATNNWTLQC 263 (358)
Q Consensus 249 ~~~~c~~~~~~~l~~ 263 (358)
.=.--.+++-|||.=
T Consensus 86 ~IYp~~sPGGWqliG 100 (141)
T 2zp2_A 86 GVYPISTPGGWQLIG 100 (141)
T ss_dssp EECSSCCCCCCEEEE
T ss_pred EEECCCCCCcceEec
Confidence 544445567788754
No 39
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=24.54 E-value=47 Score=24.40 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHhCCCcHHHHHhc
Q 018290 47 PNKTTISEIQSLFTVKNLRSILGA 70 (358)
Q Consensus 47 ~~GdTL~~IA~~fgvs~l~~L~~~ 70 (358)
..|.++.+||+.|||+. ..|.+|
T Consensus 36 ~~g~s~~~iA~~~gIs~-sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPE-STLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCH-HHHHHH
T ss_pred HCCCCHHHHHHHHCcCH-HHHHHH
Confidence 46889999999999995 777665
No 40
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=24.17 E-value=47 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.5
Q ss_pred CChHHHHHHHhCCCHHHHhhh
Q 018290 179 GSSFALIAQKFGTDRDTLMKL 199 (358)
Q Consensus 179 GDTL~~IA~kygvt~~~L~~~ 199 (358)
|.+...+|++||+|...+.+.
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 899999999999999887643
No 41
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.52 E-value=45 Score=25.34 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.0
Q ss_pred ecCChHHHHHHHhCCCHHHHhhh
Q 018290 177 EEGSSFALIAQKFGTDRDTLMKL 199 (358)
Q Consensus 177 ~~GDTL~~IA~kygvt~~~L~~~ 199 (358)
+.|.+...||++||++...+.+|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998887655
No 42
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.43 E-value=49 Score=24.54 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=19.2
Q ss_pred CCCHHHHHHHhCCCcHHHHHhcC
Q 018290 49 KTTISEIQSLFTVKNLRSILGAN 71 (358)
Q Consensus 49 GdTL~~IA~~fgvs~l~~L~~~N 71 (358)
|.++.+||+.|||+. ..|.+|=
T Consensus 23 g~s~~~ia~~~gIs~-~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINR-VTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCH-HHHHHHH
T ss_pred CChHHHHHHHHCcCH-HHHHHHH
Confidence 789999999999995 8887773
No 43
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=21.13 E-value=44 Score=19.87 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=11.7
Q ss_pred CCcCccccCccccCC
Q 018290 273 PNSRWKTCPSMLCGD 287 (358)
Q Consensus 273 ~~~~~~~~~~~~c~~ 287 (358)
+-|.|.-|+..+|.|
T Consensus 12 gpwewpccsglkcdg 26 (32)
T 1wqb_A 12 GPWEWPCCSGLKCDG 26 (32)
T ss_dssp CSSSSCBCTTCEESS
T ss_pred CCccCccccCccccC
Confidence 457798888889975
No 44
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=20.78 E-value=22 Score=29.73 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHhhcc
Q 018290 1 MGNFQLKLVLLLFTVCAALS 20 (358)
Q Consensus 1 m~~~~~ll~lll~l~~~~~~ 20 (358)
|.++++||+.+..|++.+.+
T Consensus 1 m~~~~~~l~~la~l~~~s~a 20 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFVSEA 20 (147)
T ss_dssp --------------------
T ss_pred CchHHHHHHHHHHHHhhccc
Confidence 88999998877777765533
Done!