Query 018291
Match_columns 358
No_of_seqs 331 out of 1700
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.7 1.5E-18 3.2E-23 171.5 3.5 171 102-278 150-356 (483)
2 KOG4341 F-box protein containi 99.7 8.3E-17 1.8E-21 159.2 5.7 165 101-272 279-456 (483)
3 KOG1947 Leucine rich repeat pr 99.6 7E-15 1.5E-19 147.3 8.6 167 114-281 243-440 (482)
4 KOG1947 Leucine rich repeat pr 99.4 1.2E-13 2.7E-18 138.3 7.6 147 102-254 200-362 (482)
5 KOG2120 SCF ubiquitin ligase, 99.3 3.7E-12 8.1E-17 122.3 5.6 159 102-267 221-393 (419)
6 cd00116 LRR_RI Leucine-rich re 99.0 1.4E-09 3E-14 103.9 9.5 138 114-259 137-294 (319)
7 KOG2120 SCF ubiquitin ligase, 99.0 4.6E-10 9.9E-15 108.1 5.7 144 103-254 171-324 (419)
8 cd00116 LRR_RI Leucine-rich re 98.9 6.8E-09 1.5E-13 99.1 11.9 139 114-260 108-267 (319)
9 KOG3864 Uncharacterized conser 98.4 2.2E-07 4.8E-12 85.3 3.3 85 115-201 102-186 (221)
10 KOG3864 Uncharacterized conser 98.2 8.6E-07 1.9E-11 81.4 4.0 94 102-196 112-209 (221)
11 KOG3665 ZYG-1-like serine/thre 98.1 8.1E-06 1.8E-10 88.0 8.2 62 114-176 122-184 (699)
12 smart00367 LRR_CC Leucine-rich 98.0 6.5E-06 1.4E-10 51.1 3.0 25 138-162 1-25 (26)
13 KOG1909 Ran GTPase-activating 97.8 3.4E-05 7.4E-10 76.0 6.5 139 114-259 92-286 (382)
14 PF14580 LRR_9: Leucine-rich r 97.7 2.6E-05 5.7E-10 70.5 3.3 131 103-241 4-144 (175)
15 smart00367 LRR_CC Leucine-rich 97.6 4.8E-05 1E-09 47.1 2.9 25 164-188 1-25 (26)
16 KOG3207 Beta-tubulin folding c 97.5 5E-05 1.1E-09 76.8 2.2 143 114-266 146-294 (505)
17 KOG3665 ZYG-1-like serine/thre 97.4 0.00058 1.3E-08 73.9 9.3 167 103-276 72-283 (699)
18 KOG1909 Ran GTPase-activating 97.3 0.001 2.2E-08 65.8 8.8 135 114-256 157-311 (382)
19 PLN03210 Resistant to P. syrin 97.3 0.00022 4.8E-09 81.2 4.4 123 114-254 778-904 (1153)
20 PF14580 LRR_9: Leucine-rich r 97.0 0.00012 2.7E-09 66.1 -0.8 118 126-257 4-127 (175)
21 KOG3207 Beta-tubulin folding c 97.0 0.00059 1.3E-08 69.2 3.4 103 114-220 121-228 (505)
22 PLN00113 leucine-rich repeat r 96.9 0.0014 3E-08 72.8 6.1 107 138-255 139-248 (968)
23 PLN03210 Resistant to P. syrin 96.6 0.0035 7.6E-08 71.5 6.3 59 114-177 657-716 (1153)
24 PLN00113 leucine-rich repeat r 96.5 0.0038 8.2E-08 69.3 5.8 130 114-256 93-225 (968)
25 KOG2982 Uncharacterized conser 96.5 0.003 6.6E-08 61.7 4.2 132 114-254 71-210 (418)
26 KOG4308 LRR-containing protein 96.2 0.0015 3.1E-08 67.9 0.7 150 102-259 98-278 (478)
27 PF13516 LRR_6: Leucine Rich r 96.1 0.0035 7.5E-08 37.8 1.7 23 138-161 1-23 (24)
28 PF12799 LRR_4: Leucine Rich r 95.6 0.01 2.2E-07 41.4 2.5 33 115-149 2-34 (44)
29 KOG0618 Serine/threonine phosp 95.5 0.019 4.2E-07 63.1 5.5 109 100-220 368-482 (1081)
30 PF13855 LRR_8: Leucine rich r 95.4 0.00086 1.9E-08 49.3 -3.6 60 114-176 1-60 (61)
31 KOG4194 Membrane glycoprotein 95.4 0.004 8.6E-08 65.5 -0.1 118 137-271 315-447 (873)
32 PF13516 LRR_6: Leucine Rich r 95.4 0.013 2.7E-07 35.3 2.1 24 164-188 1-24 (24)
33 KOG2739 Leucine-rich acidic nu 94.9 0.009 1.9E-07 57.0 0.6 82 114-198 65-150 (260)
34 COG5238 RNA1 Ran GTPase-activa 94.6 0.18 4E-06 49.0 8.8 146 102-254 41-225 (388)
35 KOG1259 Nischarin, modulator o 94.0 0.026 5.6E-07 55.5 1.5 123 114-255 284-411 (490)
36 PF12799 LRR_4: Leucine Rich r 93.5 0.07 1.5E-06 37.1 2.6 35 139-176 1-35 (44)
37 KOG1859 Leucine-rich repeat pr 92.8 0.041 9E-07 59.4 1.0 87 105-203 180-266 (1096)
38 PRK15386 type III secretion pr 92.8 0.19 4.1E-06 51.5 5.6 70 114-200 52-121 (426)
39 smart00368 LRR_RI Leucine rich 92.7 0.15 3.2E-06 32.0 3.0 22 115-136 3-24 (28)
40 PF13855 LRR_8: Leucine rich r 92.5 0.0081 1.8E-07 44.0 -3.5 60 139-202 1-60 (61)
41 KOG4308 LRR-containing protein 92.3 0.059 1.3E-06 56.1 1.4 117 114-232 172-310 (478)
42 KOG2739 Leucine-rich acidic nu 92.0 0.029 6.4E-07 53.5 -1.2 101 114-220 43-149 (260)
43 KOG2123 Uncharacterized conser 91.8 0.04 8.6E-07 53.7 -0.6 80 114-197 41-123 (388)
44 KOG4194 Membrane glycoprotein 90.8 0.075 1.6E-06 56.3 0.2 87 163-262 315-414 (873)
45 smart00368 LRR_RI Leucine rich 89.0 0.55 1.2E-05 29.4 3.0 24 139-163 2-25 (28)
46 PLN03150 hypothetical protein; 87.2 0.71 1.5E-05 49.6 4.5 85 115-204 419-503 (623)
47 PLN03150 hypothetical protein; 87.1 0.71 1.5E-05 49.6 4.4 77 140-220 419-496 (623)
48 KOG1859 Leucine-rich repeat pr 86.6 0.14 2.9E-06 55.7 -1.3 92 115-220 165-260 (1096)
49 PRK15387 E3 ubiquitin-protein 86.3 0.45 9.8E-06 52.5 2.5 80 165-261 382-463 (788)
50 KOG2982 Uncharacterized conser 86.2 0.84 1.8E-05 45.1 3.9 129 114-254 45-184 (418)
51 COG5238 RNA1 Ran GTPase-activa 86.0 4.6 9.9E-05 39.7 8.8 147 110-262 87-261 (388)
52 PRK15370 E3 ubiquitin-protein 85.8 1.6 3.4E-05 48.1 6.2 107 139-263 325-435 (754)
53 KOG1644 U2-associated snRNP A' 83.9 0.7 1.5E-05 43.2 2.1 90 137-229 62-155 (233)
54 PRK15387 E3 ubiquitin-protein 83.6 1.2 2.5E-05 49.3 4.1 14 190-203 301-314 (788)
55 KOG1644 U2-associated snRNP A' 83.0 0.76 1.6E-05 42.9 2.0 83 114-201 64-150 (233)
56 KOG0618 Serine/threonine phosp 82.7 0.78 1.7E-05 51.0 2.2 62 114-177 407-488 (1081)
57 KOG0444 Cytoskeletal regulator 81.6 0.39 8.5E-06 51.6 -0.5 34 139-175 245-278 (1255)
58 PF13504 LRR_7: Leucine rich r 75.4 2.2 4.9E-05 23.6 1.6 11 140-150 2-12 (17)
59 PRK15370 E3 ubiquitin-protein 74.5 7.3 0.00016 43.0 6.7 10 166-175 284-293 (754)
60 KOG2123 Uncharacterized conser 74.5 1.9 4.2E-05 42.3 2.0 113 114-234 19-137 (388)
61 KOG3763 mRNA export factor TAP 73.8 4.9 0.00011 42.5 4.8 111 85-198 187-308 (585)
62 KOG0444 Cytoskeletal regulator 73.1 0.56 1.2E-05 50.5 -2.2 83 114-204 197-281 (1255)
63 KOG4658 Apoptotic ATPase [Sign 62.6 9.5 0.00021 42.9 4.5 39 114-152 545-584 (889)
64 KOG1259 Nischarin, modulator o 61.7 8.8 0.00019 38.2 3.6 81 114-204 307-387 (490)
65 PF00560 LRR_1: Leucine Rich R 59.7 3.9 8.5E-05 23.9 0.5 9 141-149 2-10 (22)
66 KOG0531 Protein phosphatase 1, 52.5 4.5 9.7E-05 40.9 -0.1 12 164-175 161-172 (414)
67 PF07723 LRR_2: Leucine Rich R 49.9 14 0.0003 22.8 1.8 25 141-165 2-26 (26)
68 COG4886 Leucine-rich repeat (L 46.8 15 0.00033 36.3 2.7 16 233-254 251-266 (394)
69 KOG4658 Apoptotic ATPase [Sign 45.3 17 0.00038 40.9 3.1 77 114-201 571-652 (889)
70 KOG0472 Leucine-rich repeat pr 45.2 12 0.00025 38.7 1.5 138 102-255 376-540 (565)
71 KOG4237 Extracellular matrix p 43.8 68 0.0015 33.2 6.6 72 132-207 267-338 (498)
72 cd03742 SOCS_Rab40 SOCS (suppr 42.1 31 0.00066 24.2 2.8 35 55-93 2-36 (43)
73 cd03717 SOCS_SOCS_like SOCS (s 41.8 21 0.00045 24.1 1.9 35 55-93 2-36 (39)
74 COG4886 Leucine-rich repeat (L 39.6 18 0.00039 35.8 1.9 56 115-175 141-196 (394)
75 cd03737 SOCS_SOCS3 SOCS (suppr 39.1 26 0.00057 24.3 2.1 19 55-73 2-20 (42)
76 smart00253 SOCS suppressors of 37.2 26 0.00056 24.2 1.8 38 52-93 3-40 (43)
77 PRK15386 type III secretion pr 36.5 17 0.00037 37.5 1.1 56 137-202 50-105 (426)
78 cd03735 SOCS_SOCS1 SOCS (suppr 34.2 32 0.00069 24.1 1.9 36 55-94 2-37 (43)
79 KOG3763 mRNA export factor TAP 33.1 75 0.0016 33.9 5.2 84 158-241 211-305 (585)
80 cd03745 SOCS_WSB2_SWIP2 SOCS ( 32.4 34 0.00073 23.4 1.7 18 55-72 2-19 (39)
81 KOG0531 Protein phosphatase 1, 31.1 11 0.00024 38.0 -1.1 82 114-206 95-177 (414)
82 cd03740 SOCS_SOCS6 SOCS (suppr 28.6 73 0.0016 21.9 2.9 36 55-94 2-37 (41)
83 cd03725 SOCS_ASB6 SOCS (suppre 27.2 62 0.0014 22.6 2.4 18 55-72 2-19 (44)
84 PF03382 DUF285: Mycoplasma pr 26.9 56 0.0012 27.2 2.6 13 188-201 58-70 (120)
85 cd03733 SOCS_WSB_SWIP SOCS (su 25.8 57 0.0012 22.2 2.0 18 55-72 2-19 (39)
86 cd03746 SOCS_WSB1_SWIP1 SOCS ( 25.0 73 0.0016 21.8 2.4 34 55-92 2-35 (40)
87 cd03734 SOCS_CIS1 SOCS (suppre 23.8 69 0.0015 22.1 2.1 18 55-72 2-19 (41)
88 PF11065 DUF2866: Protein of u 23.2 52 0.0011 25.0 1.5 50 249-306 2-53 (65)
89 PF15444 TMEM247: Transmembran 21.6 99 0.0022 28.3 3.2 35 300-336 105-139 (218)
90 smart00369 LRR_TYP Leucine-ric 20.7 68 0.0015 18.9 1.4 11 115-125 3-13 (26)
91 smart00370 LRR Leucine-rich re 20.7 68 0.0015 18.9 1.4 11 115-125 3-13 (26)
92 cd03736 SOCS_SOCS2 SOCS (suppr 20.2 91 0.002 21.4 2.1 18 55-72 2-19 (41)
93 KOG4579 Leucine-rich repeat (L 20.1 30 0.00064 30.9 -0.4 87 105-198 44-130 (177)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.72 E-value=1.5e-18 Score=171.50 Aligned_cols=171 Identities=17% Similarity=0.322 Sum_probs=145.6
Q ss_pred CCCHHHHHHhhc--cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCC
Q 018291 102 LLADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 178 (358)
Q Consensus 102 ~ltD~~L~~l~~--~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~I 178 (358)
.+.|..+..++. |++++|++.|| +|||..+..++..|++|++|+|..|..+||..++.+++.||+|++|++++|+.|
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 477888888877 89999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCCcEEeCC--------------------------Cc-cccchhh--hhcccccccccc---cccCCH
Q 018291 179 NHAARRCLGILKPKLNDVEGD--------------------------SW-EELVNTD--IGHGAQSLRWFV---WPNIDK 226 (358)
Q Consensus 179 tD~~l~~L~~~cp~L~~L~ls--------------------------~~-~~~d~~~--i~~~~~sL~~L~---C~~ITd 226 (358)
++.+++++.+.|..|+.+... .| .++|.++ +..+|..|+.|. |.++||
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 888887777777665444222 33 2344443 467788888887 999999
Q ss_pred HHHHHHHhcCCCceecCCCCceeecCCC-CCccccccccCCCccccccccccc
Q 018291 227 DSIEMMSTECPRIIVNPKPSPFGFRGFE-VPREAFPDITLDDPFVNDIDPSAW 278 (358)
Q Consensus 227 ~~l~~L~~~Cp~L~~~p~~~~l~l~gC~-~s~eal~~~~l~~~~~~~~~~~~W 278 (358)
..+.++..+|++|++ +-+.+|. ++..++..+.-.++.+++++.+.-
T Consensus 310 ~~l~aLg~~~~~L~~------l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQV------LELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HHHHHHhcCCCceEE------EeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 999999999999999 9999999 999999999999999999888754
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.65 E-value=8.3e-17 Score=159.24 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=142.9
Q ss_pred CCCCHHHHHHhhc--cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCC
Q 018291 101 KLLADDVIMSLAD--SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 177 (358)
Q Consensus 101 ~~ltD~~L~~l~~--~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ 177 (358)
..|||+.+..+.. ..|+.|+.++| +++|..+.++.++|++|+.|-|++|.++||.|+..++++|+.|+.|++.+|..
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 4588888887776 78999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCcEEeCCCcc-ccchhhh-----hcccccccccc---cccCCHHHHHHHHhcCCCceecCCCCce
Q 018291 178 SNHAARRCLGILKPKLNDVEGDSWE-ELVNTDI-----GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPF 248 (358)
Q Consensus 178 ItD~~l~~L~~~cp~L~~L~ls~~~-~~d~~~i-----~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~~~l 248 (358)
++|..+..++.+||.|+.|.++.|. ++|+|+. ..+...|..+. |+.|||..++++. .|++|+. +
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Ler------i 431 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLER------I 431 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccce------e
Confidence 9999999999999999999999874 6777653 22334444443 9999999999885 7999999 9
Q ss_pred eecCCC-CCccccccccCCCccccc
Q 018291 249 GFRGFE-VPREAFPDITLDDPFVND 272 (358)
Q Consensus 249 ~l~gC~-~s~eal~~~~l~~~~~~~ 272 (358)
++.+|. ++++++..+....|.++=
T Consensus 432 ~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred eeechhhhhhhhhHHHHhhCcccee
Confidence 999999 999999888888766653
No 3
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.56 E-value=7e-15 Score=147.31 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=111.8
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
++|+.|++++| .|||.|+..++..|++|++|.+.+|..+||.|+..++..|++|++|++++|..++|.++.+++.+||+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN 322 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence 56777888888 58888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcEEeCCCcc----ccchh--------------hhhcccccccccc---cccCCHHHHHHHHhcCCCce-e-----c--C
Q 018291 193 LNDVEGDSWE----ELVNT--------------DIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRII-V-----N--P 243 (358)
Q Consensus 193 L~~L~ls~~~----~~d~~--------------~i~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~-~-----~--p 243 (358)
|+.|.+.... +++.+ .++..|+.|+.+. |. +++.++..+..+||+|+ . . +
T Consensus 323 l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~ 401 (482)
T KOG1947|consen 323 LRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSD 401 (482)
T ss_pred hhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCC
Confidence 7776543321 11111 1244555555554 55 66666666677777661 0 0 0
Q ss_pred CCCceeecCCC-CCccccccccCCCcccccccccccccc
Q 018291 244 KPSPFGFRGFE-VPREAFPDITLDDPFVNDIDPSAWAVP 281 (358)
Q Consensus 244 ~~~~l~l~gC~-~s~eal~~~~l~~~~~~~~~~~~W~v~ 281 (358)
...-+++.+|. ++...+......+..+..++...+...
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 01117777777 666666555544444555555554443
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=138.29 Aligned_cols=147 Identities=22% Similarity=0.306 Sum_probs=86.5
Q ss_pred CCCHHHHHHhhc--cCccEEEeeC-C-CCChHH--HHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 102 LLADDVIMSLAD--SSWEILDISG-S-DVSDFG--LVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 102 ~ltD~~L~~l~~--~~L~~L~Ls~-c-~ItD~g--L~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
.++|..+..++. ++|+.|++++ | .+++.+ ...++..|++|+.|++++|..+||.|+..++..||+|++|.+.+|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 355554444443 6666666666 3 444433 334556666666666666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHhhCCCCcEEeCCCcccc-chhh--hhcccccccccc------cccCCHHHHHHHHhcCC-CceecCCC
Q 018291 176 PRSNHAARRCLGILKPKLNDVEGDSWEEL-VNTD--IGHGAQSLRWFV------WPNIDKDSIEMMSTECP-RIIVNPKP 245 (358)
Q Consensus 176 ~~ItD~~l~~L~~~cp~L~~L~ls~~~~~-d~~~--i~~~~~sL~~L~------C~~ITd~~l~~L~~~Cp-~L~~~p~~ 245 (358)
..+||.++..|+..||.|+.|+++.|..+ |.++ ++..|++|+.|. |..|++.++..+...++ .+..
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~---- 355 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAE---- 355 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhH----
Confidence 66666666666666666666666665443 3332 233455444433 45566666666666664 5565
Q ss_pred CceeecCCC
Q 018291 246 SPFGFRGFE 254 (358)
Q Consensus 246 ~~l~l~gC~ 254 (358)
+.+.+|+
T Consensus 356 --~~~~~~~ 362 (482)
T KOG1947|consen 356 --LILRSCP 362 (482)
T ss_pred --HHHhcCC
Confidence 6666666
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.7e-12 Score=122.30 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=124.6
Q ss_pred CCCHHHHHHhhc-cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC-CC
Q 018291 102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP-RS 178 (358)
Q Consensus 102 ~ltD~~L~~l~~-~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~-~I 178 (358)
.++|.....++. .+|+.|||++| ++|..|+..+...|..|.+|||++|...++..-..++.--++|..|||+||. +.
T Consensus 221 ~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl 300 (419)
T KOG2120|consen 221 RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL 300 (419)
T ss_pred ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh
Confidence 478888888887 89999999999 9999999999999999999999999988887333444446899999999995 45
Q ss_pred cHHHHHHHHhhCCCCcEEeCCCccccchhhh--hcccccccccc---cccCCHHHHHHHHhcCCCceecCCCCceeecCC
Q 018291 179 NHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGF 253 (358)
Q Consensus 179 tD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i--~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC 253 (358)
.+.-+..+...||+|.+||++.+..+..+.+ -..++-|++|. |..|..+.+..+ ..-|.|.+ +++.||
T Consensus 301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~y------Ldv~g~ 373 (419)
T KOG2120|consen 301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVY------LDVFGC 373 (419)
T ss_pred hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEE------EEeccc
Confidence 6677888889999999999988755444443 34456677766 988888887665 45688888 999988
Q ss_pred C------CCccccccccCCC
Q 018291 254 E------VPREAFPDITLDD 267 (358)
Q Consensus 254 ~------~s~eal~~~~l~~ 267 (358)
- +..+.++.+...+
T Consensus 374 vsdt~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 374 VSDTTMELLKEMLSHLKINC 393 (419)
T ss_pred cCchHHHHHHHhCccccccc
Confidence 6 3344455555544
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.4e-09 Score=103.89 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=86.0
Q ss_pred cCccEEEeeCCCCChHHHHHHH---HhCCCCCEEeecCCCCCCHHHHHHHHhC---CCCCceEEccCCCCCcHHHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLH---CHSLETLRCGGSPRSNHAARRCLG 187 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la---~~C~~L~~LdLs~C~~ITD~gl~~La~~---Cp~L~~L~L~gC~~ItD~~l~~L~ 187 (358)
++|+.|+|++|.+++.++..+. ..+++|++|+|++| .+++.++..++.. +++|++|++++| .+++.+...+.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 5677777777777755544333 34567777777775 4777776665543 347777777777 45555554443
Q ss_pred ---hhCCCCcEEeCCCccccchhhh--hcc----cccccccc--cccCCHHHHHHHHhcC---CCceecCCCCceeecCC
Q 018291 188 ---ILKPKLNDVEGDSWEELVNTDI--GHG----AQSLRWFV--WPNIDKDSIEMMSTEC---PRIIVNPKPSPFGFRGF 253 (358)
Q Consensus 188 ---~~cp~L~~L~ls~~~~~d~~~i--~~~----~~sL~~L~--C~~ITd~~l~~L~~~C---p~L~~~p~~~~l~l~gC 253 (358)
..+++|++|+++++.+.+.++. ... .+.|+.|+ +..|+|.+...+...+ ++|+. +++.++
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~------l~l~~N 288 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE------LDLRGN 288 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE------EECCCC
Confidence 3466777777777776664432 222 25677666 5567766666555444 45666 777777
Q ss_pred CCCccc
Q 018291 254 EVPREA 259 (358)
Q Consensus 254 ~~s~ea 259 (358)
.++.++
T Consensus 289 ~l~~~~ 294 (319)
T cd00116 289 KFGEEG 294 (319)
T ss_pred CCcHHH
Confidence 765553
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.6e-10 Score=108.11 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=109.2
Q ss_pred CCHHHHHHhhc---cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCc
Q 018291 103 LADDVIMSLAD---SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 179 (358)
Q Consensus 103 ltD~~L~~l~~---~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~It 179 (358)
+.+..+...+. ..|++|||+...||-..+..+...|.+|+.|+|.+ .++.|.-+..||++ .+|+.||+++|.++|
T Consensus 171 ~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 171 MDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGFT 248 (419)
T ss_pred hcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc-ccceeeccccccccc
Confidence 44443433333 56888899888888888888888888888888888 56888888888864 678888888888888
Q ss_pred HHHHHHHHhhCCCCcEEeCCCccccchhh---hhcccccccccc---c-ccCCHHHHHHHHhcCCCceecCCCCceeecC
Q 018291 180 HAARRCLGILKPKLNDVEGDSWEELVNTD---IGHGAQSLRWFV---W-PNIDKDSIEMMSTECPRIIVNPKPSPFGFRG 252 (358)
Q Consensus 180 D~~l~~L~~~cp~L~~L~ls~~~~~d~~~---i~~~~~sL~~L~---C-~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~g 252 (358)
..+++.+...|..|..|+++-|..+.+.+ +++..++|..|+ | .++-+.-+..+++.||+|.. +|+..
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~------LDLSD 322 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH------LDLSD 322 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee------ecccc
Confidence 88888888888888888887776555433 466667777776 3 34556677888888888888 88877
Q ss_pred CC
Q 018291 253 FE 254 (358)
Q Consensus 253 C~ 254 (358)
|.
T Consensus 323 ~v 324 (419)
T KOG2120|consen 323 SV 324 (419)
T ss_pred cc
Confidence 77
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=6.8e-09 Score=99.09 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=104.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHH---hC-CCCCEEeecCCCCCCHHHHHHH---HhCCCCCceEEccCCCCCcHHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQ---MC-KSLKAVDISCCDRITAAGVSEF---LLHCHSLETLRCGGSPRSNHAARRCL 186 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~---~C-~~L~~LdLs~C~~ITD~gl~~L---a~~Cp~L~~L~L~gC~~ItD~~l~~L 186 (358)
++|++|++++|.++|.++..+.. .+ ++|++|+|++|. +++.++..+ ...|+.|++|++++|. +++.++..+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHH
Confidence 56999999999999888876553 34 889999999985 775554443 4567789999999874 676777766
Q ss_pred HhhC---CCCcEEeCCCccccchhh--h---hcccccccccc--cccCCHHHHHHHHhcC----CCceecCCCCceeecC
Q 018291 187 GILK---PKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIEMMSTEC----PRIIVNPKPSPFGFRG 252 (358)
Q Consensus 187 ~~~c---p~L~~L~ls~~~~~d~~~--i---~~~~~sL~~L~--C~~ITd~~l~~L~~~C----p~L~~~p~~~~l~l~g 252 (358)
+..+ ++|++|+++++.+.+.+. + ...+++|+.|+ ...++|.++..+...+ +.|+. +++.+
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~------L~l~~ 259 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT------LSLSC 259 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE------EEccC
Confidence 5433 589999999887766543 2 23467888887 3468998888888775 78999 99999
Q ss_pred CCCCcccc
Q 018291 253 FEVPREAF 260 (358)
Q Consensus 253 C~~s~eal 260 (358)
|.++.++.
T Consensus 260 n~i~~~~~ 267 (319)
T cd00116 260 NDITDDGA 267 (319)
T ss_pred CCCCcHHH
Confidence 99764443
No 9
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=2.2e-07 Score=85.26 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=76.3
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
.++.+|-+++.|.-.|+..+ ..++.|+.|.+.+|..+.|.++..|+.-.++|+.|+|+||++|||.|+..|.. .++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 46889999999999999998 47999999999999999999999999989999999999999999999999986 68888
Q ss_pred EEeCCCc
Q 018291 195 DVEGDSW 201 (358)
Q Consensus 195 ~L~ls~~ 201 (358)
.|.+..-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877543
No 10
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=8.6e-07 Score=81.44 Aligned_cols=94 Identities=24% Similarity=0.308 Sum_probs=79.1
Q ss_pred CCCHHHHHHhhc-cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCc
Q 018291 102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN 179 (358)
Q Consensus 102 ~ltD~~L~~l~~-~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~It 179 (358)
.|..+++..|.+ +.++.|.+.+| .+.|.+|..++.-.++|+.|+|++|++|||.|+..|. ..++|+.|.+.+-+.+.
T Consensus 112 ~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 112 SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhhh
Confidence 366678888888 99999999999 9999999999999999999999999999999999887 47999999999887776
Q ss_pred HHHHH--HHHhhCCCCcEE
Q 018291 180 HAARR--CLGILKPKLNDV 196 (358)
Q Consensus 180 D~~l~--~L~~~cp~L~~L 196 (358)
.-... .+-..+|+++..
T Consensus 191 ~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 191 NLELVQRQLEEALPKCDIV 209 (221)
T ss_pred chHHHHHHHHHhCccccee
Confidence 54333 244567777654
No 11
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=8.1e-06 Score=87.97 Aligned_cols=62 Identities=27% Similarity=0.276 Sum_probs=51.6
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
.+|++||++|. .++......++..+|+|++|.+++= .+.++-+..+..+-|+|..||++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN 184 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC
Confidence 68899999998 7888888899999999999999884 45444588888888999999999874
No 12
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.98 E-value=6.5e-06 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.711 Sum_probs=18.5
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHh
Q 018291 138 CKSLKAVDISCCDRITAAGVSEFLL 162 (358)
Q Consensus 138 C~~L~~LdLs~C~~ITD~gl~~La~ 162 (358)
||+|++|+|++|.+|||.|+..|++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6777777777777777777777764
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=3.4e-05 Score=76.01 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=77.1
Q ss_pred cCccEEEeeCCCCChHHH---HHHHHhCCCCCEEeecCCC------------------------------------CCCH
Q 018291 114 SSWEILDISGSDVSDFGL---VKVAQMCKSLKAVDISCCD------------------------------------RITA 154 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL---~~la~~C~~L~~LdLs~C~------------------------------------~ITD 154 (358)
|.|+.||||++-+...|+ ..+..+|..|++|.|.+|. ++-|
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 567777777765544443 3444556666666666663 2222
Q ss_pred HH---HHHHHhCCCCCceEEccCCCCCcHHHHHHH---HhhCCCCcEEeCCCccccchhhh--hc---ccccccccc--c
Q 018291 155 AG---VSEFLLHCHSLETLRCGGSPRSNHAARRCL---GILKPKLNDVEGDSWEELVNTDI--GH---GAQSLRWFV--W 221 (358)
Q Consensus 155 ~g---l~~La~~Cp~L~~L~L~gC~~ItD~~l~~L---~~~cp~L~~L~ls~~~~~d~~~i--~~---~~~sL~~L~--C 221 (358)
.| +..+.+.+|.|+.+.+... .|...++.++ ..+||+|+.||+.....+..|.+ +. ..+.|++|. -
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 22 3333345666666666532 3433333333 25678888887766555554432 32 234455555 2
Q ss_pred ccCCHHHHH----HHHhcCCCceecCCCCceeecCCCCCccc
Q 018291 222 PNIDKDSIE----MMSTECPRIIVNPKPSPFGFRGFEVPREA 259 (358)
Q Consensus 222 ~~ITd~~l~----~L~~~Cp~L~~~p~~~~l~l~gC~~s~ea 259 (358)
..+.+.|.. ++...-|+|++ +.|.||.+++++
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~v------l~l~gNeIt~da 286 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEV------LELAGNEITRDA 286 (382)
T ss_pred cccccccHHHHHHHHhccCCCCce------eccCcchhHHHH
Confidence 235555544 44456788888 888888866555
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.70 E-value=2.6e-05 Score=70.46 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCHHHHHHhhc----cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCC
Q 018291 103 LADDVIMSLAD----SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 178 (358)
Q Consensus 103 ltD~~L~~l~~----~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~I 178 (358)
+|-+.|...++ ..++.|+|+|+.|+. ++.+...+.+|+.|||++|. |+. |..+ ..++.|++|++++- .|
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l-~~L~~L~~L~L~~N-~I 76 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITK--LEGL-PGLPRLKTLDLSNN-RI 76 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---
T ss_pred cccccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCc-cChhhhhhcccCCC-CC
Confidence 34445554444 357888888887765 34555567888888888864 553 2222 24788888888865 34
Q ss_pred cHHHHHHHHhhCCCCcEEeCCCccccchhhh--hcccccccccc-c-ccCC--HHHHHHHHhcCCCcee
Q 018291 179 NHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV-W-PNID--KDSIEMMSTECPRIIV 241 (358)
Q Consensus 179 tD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i--~~~~~sL~~L~-C-~~IT--d~~l~~L~~~Cp~L~~ 241 (358)
++-+ ..+...||+|+.|++++..+.+-..+ -..+++|+.|. . .-|+ ..--..+...||+|+.
T Consensus 77 ~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 77 SSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp -S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred Cccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 3321 13434688888888877666553332 12456666665 0 1122 2235566778888888
No 15
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.64 E-value=4.8e-05 Score=47.14 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCCceEEccCCCCCcHHHHHHHHh
Q 018291 164 CHSLETLRCGGSPRSNHAARRCLGI 188 (358)
Q Consensus 164 Cp~L~~L~L~gC~~ItD~~l~~L~~ 188 (358)
||+|++|+|++|++|||.++.+|+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 8999999999999999999999985
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=5e-05 Score=76.79 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=80.5
Q ss_pred cCccEEEeeCCCC-ChHHHHHHHHhCCCCCEEeecCCCC--CCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhC
Q 018291 114 SSWEILDISGSDV-SDFGLVKVAQMCKSLKAVDISCCDR--ITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c~I-tD~gL~~la~~C~~L~~LdLs~C~~--ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~c 190 (358)
++++.||||++-+ .-..+..|++..|+|+.|+|+.-.- .++.-... ..+.|+.|.|++| +++-..+..+...+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~C-Gls~k~V~~~~~~f 221 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSC-GLSWKDVQWILLTF 221 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccC-CCCHHHHHHHHHhC
Confidence 6666666666633 3444556666667777666664110 11111111 3455666777777 35566677777778
Q ss_pred CCCcEEeCCCcc-ccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCccccccccCC
Q 018291 191 PKLNDVEGDSWE-ELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLD 266 (358)
Q Consensus 191 p~L~~L~ls~~~-~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~eal~~~~l~ 266 (358)
|.|+.|.+.+.+ ++-...-....+.|+.|+ -.++-|...-.....-|.|.. +++..|.++.-+.+.+...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~------Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ------LNLSSTGIASIAEPDVESL 294 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh------hhccccCcchhcCCCccch
Confidence 888877776553 221111123345666666 223333333344456788888 8888888777777766433
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=0.00058 Score=73.86 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=117.7
Q ss_pred CCHHHHHHhhccCccEEEeeCC-CCChHHH-----------HHHHH--hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCc
Q 018291 103 LADDVIMSLADSSWEILDISGS-DVSDFGL-----------VKVAQ--MCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 168 (358)
Q Consensus 103 ltD~~L~~l~~~~L~~L~Ls~c-~ItD~gL-----------~~la~--~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~ 168 (358)
+....+..+....|++|.|++. .+..... ..+.. .-.+|++||++|=..++..=+..++..+|.|+
T Consensus 72 ~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~ 151 (699)
T KOG3665|consen 72 LQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLR 151 (699)
T ss_pred cchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccc
Confidence 4556666666666999999886 4332222 22221 23589999999977787777899999999999
Q ss_pred eEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhh------------------------hcccccccccc---c
Q 018291 169 TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDI------------------------GHGAQSLRWFV---W 221 (358)
Q Consensus 169 ~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i------------------------~~~~~sL~~L~---C 221 (358)
+|.++|-.-..|+ ...+..+.|+|..||+|++.+.+-..| -..+++|+.|+ -
T Consensus 152 sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 152 SLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred eEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 9999997766666 666777899999999999988765332 12344566665 1
Q ss_pred ccCCHH-HHH---HHHhcCCCceecCCCCceeecCCCCCccccccccCCCccccccccc
Q 018291 222 PNIDKD-SIE---MMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPS 276 (358)
Q Consensus 222 ~~ITd~-~l~---~L~~~Cp~L~~~p~~~~l~l~gC~~s~eal~~~~l~~~~~~~~~~~ 276 (358)
.+.++. -+. .....+|+|+. +|..|-.+..+.+..+....|.++.+...
T Consensus 231 ~~~~~~~ii~qYlec~~~LpeLrf------LDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 231 KNNDDTKIIEQYLECGMVLPELRF------LDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccccchHHHHHHHHhcccCccccE------EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 222222 121 12356899999 99888888889999888888888886543
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.31 E-value=0.001 Score=65.85 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=101.3
Q ss_pred cCccEEEeeCCCCChHHHHHHH---HhCCCCCEEeecCCCCCCHHHHHHHH---hCCCCCceEEccCCCCCcHHHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLG 187 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la---~~C~~L~~LdLs~C~~ITD~gl~~La---~~Cp~L~~L~L~gC~~ItD~~l~~L~ 187 (358)
+.|+++..+.+.+-|.|...++ +.+|.|+.+.+.. +.|-..|+..++ .+||.|+.|||.... .|-.+-.+++
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~La 234 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALA 234 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHH
Confidence 7899999999877777665544 6789999999998 568888875554 589999999999764 4555555565
Q ss_pred hh---CCCCcEEeCCCccccchhhh------hcccccccccc--cccCCHHHHHHHH---hcCCCceecCCCCceeecCC
Q 018291 188 IL---KPKLNDVEGDSWEELVNTDI------GHGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPKPSPFGFRGF 253 (358)
Q Consensus 188 ~~---cp~L~~L~ls~~~~~d~~~i------~~~~~sL~~L~--C~~ITd~~l~~L~---~~Cp~L~~~p~~~~l~l~gC 253 (358)
.. .|+|+.|+++.|..-+.|.+ ..+.++|+.|. ...||-++..+++ ..=|.|.. |++.||
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k------LnLngN 308 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK------LNLNGN 308 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH------hcCCcc
Confidence 44 45677889999988887764 34567888887 6678888776664 33577888 999999
Q ss_pred CCC
Q 018291 254 EVP 256 (358)
Q Consensus 254 ~~s 256 (358)
...
T Consensus 309 ~l~ 311 (382)
T KOG1909|consen 309 RLG 311 (382)
T ss_pred ccc
Confidence 963
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.27 E-value=0.00022 Score=81.16 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=68.6
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
++|+.|+|++| .+.. +..-...+++|+.|+|++|.+++.- -.- .++++|++|++++|..+.. +....++
T Consensus 778 ~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~L--P~~-~~L~sL~~L~Ls~c~~L~~-----~p~~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETL--PTG-INLESLESLDLSGCSRLRT-----FPDISTN 847 (1153)
T ss_pred ccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCee--CCC-CCccccCEEECCCCCcccc-----ccccccc
Confidence 57888888887 4332 1111346888999999888776531 111 1578888888888876542 2223456
Q ss_pred CcEEeCCCccccchhhhhcccccccccc---cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 193 LNDVEGDSWEELVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~i~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
|+.|++++..+..-...-..+++|+.|. |.+++. +..-...+++|+. +++.+|+
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~------L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLET------VDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCe------eecCCCc
Confidence 7777776654432111112344555553 555553 2112234455555 5555555
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.01 E-value=0.00012 Score=66.08 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=38.3
Q ss_pred CChHHHHHHHH--hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccc
Q 018291 126 VSDFGLVKVAQ--MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEE 203 (358)
Q Consensus 126 ItD~gL~~la~--~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~ 203 (358)
+|-+.++.+++ .+-++++|+|.++ .|+. |..+...+.+|+.|+++++.-.+=. .+. .+++|+.|++++..+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~---~l~-~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITKLE---GLP-GLPRLKTLDLSNNRI 76 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T---T-----TT--EEE--SS--
T ss_pred cccccccccccccccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcccc---Ccc-ChhhhhhcccCCCCC
Confidence 45556666554 3668999999996 4665 5566656789999999998533222 233 378999999999887
Q ss_pred cchh-hhhcccccccccc--cccCCHH-HHHHHHhcCCCceecCCCCceeecCCCCCc
Q 018291 204 LVNT-DIGHGAQSLRWFV--WPNIDKD-SIEMMSTECPRIIVNPKPSPFGFRGFEVPR 257 (358)
Q Consensus 204 ~d~~-~i~~~~~sL~~L~--C~~ITd~-~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~ 257 (358)
.+-+ .+...+++|+.|. -.+|.+- .+..+ ..||+|++ +++.|.|++.
T Consensus 77 ~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~------L~L~~NPv~~ 127 (175)
T PF14580_consen 77 SSISEGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRV------LSLEGNPVCE 127 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--E------EE-TT-GGGG
T ss_pred CccccchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcce------eeccCCcccc
Confidence 7653 2345678899887 3344431 24444 57999999 9999999643
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00059 Score=69.22 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=75.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCC-HHHHHHHHhCCCCCceEEccCCCCCc--HHHHHHHHhhC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRIT-AAGVSEFLLHCHSLETLRCGGSPRSN--HAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~IT-D~gl~~La~~Cp~L~~L~L~gC~~It--D~~l~~L~~~c 190 (358)
..|+.+.|.+|.|.+.|....++.||+++.||||+ +-++ =..|..++...|+|+.|+|+.-.... +.-. ....
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l 196 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLL 196 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhh
Confidence 57888999999999999888889999999999998 3344 35688899999999999988543211 1101 1146
Q ss_pred CCCcEEeCCCccccchh--hhhcccccccccc
Q 018291 191 PKLNDVEGDSWEELVNT--DIGHGAQSLRWFV 220 (358)
Q Consensus 191 p~L~~L~ls~~~~~d~~--~i~~~~~sL~~L~ 220 (358)
++|+.|.+++|...-.. -+..++++|+.|.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~ 228 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLY 228 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhh
Confidence 77888888888766332 2456777777776
No 22
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.89 E-value=0.0014 Score=72.77 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhh-hhcccccc
Q 018291 138 CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSL 216 (358)
Q Consensus 138 C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~-i~~~~~sL 216 (358)
.++|++|+|++|. ++..--..+ .++++|++|++++|...+ ..-..++ ++++|+.|+++++..+.... .-..+++|
T Consensus 139 l~~L~~L~Ls~n~-~~~~~p~~~-~~l~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNM-LSGEIPNDI-GSFSSLKVLDLGGNVLVG-KIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCc-ccccCChHH-hcCCCCCEEECccCcccc-cCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 4555555555542 332211122 346667777776664211 1111222 35667777776655432211 11234566
Q ss_pred cccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 217 RWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 217 ~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+ ..+++...-.. ..++++|+. |++.+|.+
T Consensus 215 ~~L~L~~n~l~~~~p~~-l~~l~~L~~------L~L~~n~l 248 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYE-IGGLTSLNH------LDLVYNNL 248 (968)
T ss_pred cEEECcCCccCCcCChh-HhcCCCCCE------EECcCcee
Confidence 6665 23344322222 256788888 88888874
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.56 E-value=0.0035 Score=71.53 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=31.3
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCC
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 177 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ 177 (358)
++|+.|+|++| .+.. +..-...+++|+.|+|++|..++.--. ..++++|++|+++||..
T Consensus 657 ~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 657 TNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSR 716 (1153)
T ss_pred CcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCC
Confidence 56666666666 4332 111123456667777776665543211 01456677777776654
No 24
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.47 E-value=0.0038 Score=69.32 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=72.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.++..--..+...+++|++|+|+++. ++.. + . ....++|++|++++|.- +...-..+ ..+++|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~-~-p-~~~l~~L~~L~Ls~n~~-~~~~p~~~-~~l~~L 166 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGS-I-P-RGSIPNLETLDLSNNML-SGEIPNDI-GSFSSL 166 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccc-c-C-ccccCCCCEEECcCCcc-cccCChHH-hcCCCC
Confidence 6777777777765533233344467777777777753 3321 0 0 02457778888777642 21111223 346788
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|+++++..+.... .-..+++|+.|+ ...++...-.. ...+++|+. +++.+|.++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~------L~L~~n~l~ 225 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKW------IYLGYNNLS 225 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccE------EECcCCccC
Confidence 888887765433211 113456777776 33343321122 246788888 888888743
No 25
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.003 Score=61.70 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=85.3
Q ss_pred cCccEEEeeCCCCChH-HHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDF-GLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~-gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
..++.|||.++.|+|- .+..|..+.|.|+.|||+ |+.++. -|..+.--..+|++|-|+|. .+.=+.+.......|.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s-~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSS-DIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCC-ccccCcccccceEEEEEcCC-CCChhhhhhhhhcchh
Confidence 6778888888888764 456677888888888888 465554 23333223457888888875 4555666666677888
Q ss_pred CcEEeCCCc---cc-cchhhhhcccccccccc---cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 193 LNDVEGDSW---EE-LVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 193 L~~L~ls~~---~~-~d~~~i~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
++.|+++.. +. .|+..+....+.++.|+ |+..--..+..+.+.-|++.. +-+..||
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s------v~v~e~P 210 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS------VFVCEGP 210 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh------eeeecCc
Confidence 888876654 22 23322333334444444 655445556677778888887 6677776
No 26
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.23 E-value=0.0015 Score=67.90 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=101.4
Q ss_pred CCCHHHHHHhhc-----cCccEEEeeCCCCChHHHHHHHHhCCC----CCEEeecCCCCCCHHHHHHHHh---CCCCCce
Q 018291 102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQMCKS----LKAVDISCCDRITAAGVSEFLL---HCHSLET 169 (358)
Q Consensus 102 ~ltD~~L~~l~~-----~~L~~L~Ls~c~ItD~gL~~la~~C~~----L~~LdLs~C~~ITD~gl~~La~---~Cp~L~~ 169 (358)
.+.|.....++. ++|+.|+++++.++|.|...+....+. |+.|++..|. +|+.|-..++. .+..|+.
T Consensus 98 ~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~~~~l~~ 176 (478)
T KOG4308|consen 98 RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEKNEHLTE 176 (478)
T ss_pred ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhcccchhH
Confidence 355666665554 789999999998999999988876554 5778888885 88888655553 4777888
Q ss_pred EEccCCCCCcHHHHHHHHhh-------CCCCcEEeCCCccccchhh------hhcccccccccc--cccCCHHHHHHHHh
Q 018291 170 LRCGGSPRSNHAARRCLGIL-------KPKLNDVEGDSWEELVNTD------IGHGAQSLRWFV--WPNIDKDSIEMMST 234 (358)
Q Consensus 170 L~L~gC~~ItD~~l~~L~~~-------cp~L~~L~ls~~~~~d~~~------i~~~~~sL~~L~--C~~ITd~~l~~L~~ 234 (358)
|++.-|..+ +.+...+... ..++++|++.++.+++... +...-..+..++ |.++.|.+++.+..
T Consensus 177 l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~ 255 (478)
T KOG4308|consen 177 LDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLP 255 (478)
T ss_pred HHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHH
Confidence 888888765 5455444433 2356778888887775443 233333355555 78888888877765
Q ss_pred cCC----CceecCCCCceeecCCCCCccc
Q 018291 235 ECP----RIIVNPKPSPFGFRGFEVPREA 259 (358)
Q Consensus 235 ~Cp----~L~~~p~~~~l~l~gC~~s~ea 259 (358)
.-+ .++. +++.+|.++..+
T Consensus 256 ~l~~~~~~l~~------l~l~~nsi~~~~ 278 (478)
T KOG4308|consen 256 CLSVLSETLRV------LDLSRNSITEKG 278 (478)
T ss_pred Hhcccchhhhh------hhhhcCCccccc
Confidence 433 4466 788888855444
No 27
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.13 E-value=0.0035 Score=37.81 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=11.9
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHH
Q 018291 138 CKSLKAVDISCCDRITAAGVSEFL 161 (358)
Q Consensus 138 C~~L~~LdLs~C~~ITD~gl~~La 161 (358)
|++|++|+|++|. |+|+|+.+|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4556666666654 6666666554
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.60 E-value=0.01 Score=41.42 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=16.3
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCC
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 149 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C 149 (358)
+|++|+|+++.|+| +......|++|+.|+|+++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 45566666665554 2221235566666666654
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.51 E-value=0.019 Score=63.10 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=66.6
Q ss_pred cCCCCHHHHHHhhc-cCccEEEeeCCC---CChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 100 RKLLADDVIMSLAD-SSWEILDISGSD---VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 100 ~~~ltD~~L~~l~~-~~L~~L~Ls~c~---ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
...+||..+..|.. .+|++|+|++++ +.|..+. ..+.|++|+||| +++|.-. ..++ .|+.|++|...+-
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSG-NkL~~Lp-~tva-~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSG-NKLTTLP-DTVA-NLGRLHTLRAHSN 440 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHh----chHHhHHHhccc-chhhhhh-HHHH-hhhhhHHHhhcCC
Confidence 45688888888877 888888888873 4565553 457788888888 5666555 3444 5778888876543
Q ss_pred CC-CcHHHHHHHHhhCCCCcEEeCCCccccchhhhhc-ccccccccc
Q 018291 176 PR-SNHAARRCLGILKPKLNDVEGDSWEELVNTDIGH-GAQSLRWFV 220 (358)
Q Consensus 176 ~~-ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~-~~~sL~~L~ 220 (358)
.- +.. .++ ..|.|+.+|+++.+.....+-.. -.++|++|+
T Consensus 441 ~l~~fP----e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 441 QLLSFP----ELA-QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred ceeech----hhh-hcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 22 222 222 36778888886543322222111 125666666
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.43 E-value=0.00086 Score=49.29 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=37.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
|+|+.|+|++|.++.-.-. ....+++|++|+|+++ .++.-.-. ...++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTT-TTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 5678888888855422111 2246788888888865 45432221 23578888888888763
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.42 E-value=0.004 Score=65.53 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=73.0
Q ss_pred hCCCCCEEeecCCCCCC---HHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCc----cccchhhh
Q 018291 137 MCKSLKAVDISCCDRIT---AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW----EELVNTDI 209 (358)
Q Consensus 137 ~C~~L~~LdLs~C~~IT---D~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~----~~~d~~~i 209 (358)
.|++|++|||++ ++|| ...+.. ...|++|+|+.-. |+.-. +..-..+.+|+.||+++. -+-|.++.
T Consensus 315 ftqkL~~LdLs~-N~i~~l~~~sf~~----L~~Le~LnLs~Ns-i~~l~-e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 315 FTQKLKELDLSS-NRITRLDEGSFRV----LSQLEELNLSHNS-IDHLA-EGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred hcccceeEeccc-cccccCChhHHHH----HHHhhhhcccccc-hHHHH-hhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 477777777776 4444 333332 3457777777532 22111 111123567888888753 44565555
Q ss_pred hcccccccccc-----cccCCHHHHHHHHhcCCCceecCCCCceeecCCC---CCccccccccCCCcccc
Q 018291 210 GHGAQSLRWFV-----WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE---VPREAFPDITLDDPFVN 271 (358)
Q Consensus 210 ~~~~~sL~~L~-----C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~---~s~eal~~~~l~~~~~~ 271 (358)
..|+++|+.|. -..|+..+.. +-+.|++ |++.+-+ +..+|+..+.+..-+++
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfs----gl~~LE~------LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFS----GLEALEH------LDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hccchhhhheeecCceeeecchhhhc----cCcccce------ecCCCCcceeecccccccchhhhhhhc
Confidence 56788888876 3445655543 6688999 9999888 77888888766654443
No 32
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.36 E-value=0.013 Score=35.30 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=18.7
Q ss_pred CCCCceEEccCCCCCcHHHHHHHHh
Q 018291 164 CHSLETLRCGGSPRSNHAARRCLGI 188 (358)
Q Consensus 164 Cp~L~~L~L~gC~~ItD~~l~~L~~ 188 (358)
|++|++|+|++|. |+|.++.+|++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 6899999999987 99999998873
No 33
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.90 E-value=0.009 Score=57.02 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=61.9
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCH-HHHHHHHhCCCCCceEEccCCC--CCcHHHHHHHHhh
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSP--RSNHAARRCLGIL 189 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD-~gl~~La~~Cp~L~~L~L~gC~--~ItD~~l~~L~~~ 189 (358)
|+|+.|.+|.+ .--..||..++..||+|++|+|++ ++|.+ ..+..+. ..++|.+|+++.|. +.+|- -..+...
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf~l 141 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVFLL 141 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhh-hhcchhhhhcccCCccccccH-HHHHHHH
Confidence 78999999998 444578889999999999999998 67775 3344443 56789999999995 33332 4556677
Q ss_pred CCCCcEEeC
Q 018291 190 KPKLNDVEG 198 (358)
Q Consensus 190 cp~L~~L~l 198 (358)
.|+|+.|+.
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 888888764
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.64 E-value=0.18 Score=49.04 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCCHHHHHHhhc-----cCccEEEeeCC---CCChHHHH------HHHHhCCCCCEEeecCCCCCCHH---HHHHHHhCC
Q 018291 102 LLADDVIMSLAD-----SSWEILDISGS---DVSDFGLV------KVAQMCKSLKAVDISCCDRITAA---GVSEFLLHC 164 (358)
Q Consensus 102 ~ltD~~L~~l~~-----~~L~~L~Ls~c---~ItD~gL~------~la~~C~~L~~LdLs~C~~ITD~---gl~~La~~C 164 (358)
.+..++...+.+ .+|+..++++- .+-|.-.. .....||+|+.++||. +.+... -+..+..+.
T Consensus 41 tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD-NAfg~~~~e~L~d~is~~ 119 (388)
T COG5238 41 TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD-NAFGSEFPEELGDLISSS 119 (388)
T ss_pred cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc-cccCcccchHHHHHHhcC
Confidence 456666655543 67888888874 34444332 2224699999999986 344433 344555677
Q ss_pred CCCceEEccCCCCC--c----HHHHHHHH-----hhCCCCcEEeCCCccccch--hhhhccc---ccccccc--cccCCH
Q 018291 165 HSLETLRCGGSPRS--N----HAARRCLG-----ILKPKLNDVEGDSWEELVN--TDIGHGA---QSLRWFV--WPNIDK 226 (358)
Q Consensus 165 p~L~~L~L~gC~~I--t----D~~l~~L~-----~~cp~L~~L~ls~~~~~d~--~~i~~~~---~sL~~L~--C~~ITd 226 (358)
.+|++|.+++|..- . ..++..++ ...|.|+++.......-+. ...+.++ ..|+.+. -..|-.
T Consensus 120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp 199 (388)
T COG5238 120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP 199 (388)
T ss_pred CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc
Confidence 88999999988421 1 12344444 3467888876543322111 1111111 2344333 445666
Q ss_pred HHHHHHH----hcCCCceecCCCCceeecCCC
Q 018291 227 DSIEMMS----TECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 227 ~~l~~L~----~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
+|+.+++ .+|.+|.+ +++..-.
T Consensus 200 egv~~L~~~gl~y~~~Lev------LDlqDNt 225 (388)
T COG5238 200 EGVTMLAFLGLFYSHSLEV------LDLQDNT 225 (388)
T ss_pred chhHHHHHHHHHHhCccee------eeccccc
Confidence 6666553 56777777 6665544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.95 E-value=0.026 Score=55.45 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=74.2
Q ss_pred cCccEEEeeCCCCC--hHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCC
Q 018291 114 SSWEILDISGSDVS--DFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 191 (358)
Q Consensus 114 ~~L~~L~Ls~c~It--D~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp 191 (358)
..|+.||||++.|+ |+++.. .|.++.|++|+ +.|+..+= ++ +.++|+.|||++... ..+..+...+-
T Consensus 284 q~LtelDLS~N~I~~iDESvKL----~Pkir~L~lS~-N~i~~v~n--La-~L~~L~~LDLS~N~L---s~~~Gwh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKL----APKLRRLILSQ-NRIRTVQN--LA-ELPQLQLLDLSGNLL---AECVGWHLKLG 352 (490)
T ss_pred hhhhhccccccchhhhhhhhhh----ccceeEEeccc-cceeeehh--hh-hcccceEeecccchh---HhhhhhHhhhc
Confidence 56889999999665 666644 49999999998 45654433 33 689999999997542 23344445566
Q ss_pred CCcEEeCCCccccchhhhhcccccccccc--cccCCH-HHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 192 KLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDK-DSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 192 ~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd-~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+++.|.+++..+-+-..+ +.+-+|..|+ -.+|-. +.+..| .+-|-|++ +.+.+-|+
T Consensus 353 NIKtL~La~N~iE~LSGL-~KLYSLvnLDl~~N~Ie~ldeV~~I-G~LPCLE~------l~L~~NPl 411 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGL-RKLYSLVNLDLSSNQIEELDEVNHI-GNLPCLET------LRLTGNPL 411 (490)
T ss_pred CEeeeehhhhhHhhhhhh-HhhhhheeccccccchhhHHHhccc-ccccHHHH------HhhcCCCc
Confidence 778888776544332211 1122444444 222221 122233 35677777 77777773
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.48 E-value=0.07 Score=37.12 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=23.8
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 139 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 139 ~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
++|++|+|+++ +|++ |.....+|++|++|+++++.
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC
Confidence 57888888885 5775 44434578888888888874
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.83 E-value=0.041 Score=59.44 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=57.0
Q ss_pred HHHHHHhhccCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHH
Q 018291 105 DDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARR 184 (358)
Q Consensus 105 D~~L~~l~~~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~ 184 (358)
|+.++.+ +.+++|||+++++++-. ....|++|++|||++ +.++-..-... .+|. |+.|++.+...-+ +.
T Consensus 180 D~SLqll--~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsy-N~L~~vp~l~~-~gc~-L~~L~lrnN~l~t---L~ 248 (1096)
T KOG1859|consen 180 DESLQLL--PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSY-NCLRHVPQLSM-VGCK-LQLLNLRNNALTT---LR 248 (1096)
T ss_pred HHHHHHH--HHhhhhccchhhhhhhH---HHHhccccccccccc-chhccccccch-hhhh-heeeeecccHHHh---hh
Confidence 5555544 78999999999888766 346899999999997 33433221111 2466 9999998764333 33
Q ss_pred HHHhhCCCCcEEeCCCccc
Q 018291 185 CLGILKPKLNDVEGDSWEE 203 (358)
Q Consensus 185 ~L~~~cp~L~~L~ls~~~~ 203 (358)
.|. ++..|+.||++..-+
T Consensus 249 gie-~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 249 GIE-NLKSLYGLDLSYNLL 266 (1096)
T ss_pred hHH-hhhhhhccchhHhhh
Confidence 333 356788888865433
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.83 E-value=0.19 Score=51.50 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=45.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
.+++.|++++|.|+.-- .--++|++|++++|.+++.- -. ...++|++|++++|..+. ..-+.|
T Consensus 52 ~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsL--P~--~LP~nLe~L~Ls~Cs~L~--------sLP~sL 114 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTL--PG--SIPEGLEKLTVCHCPEIS--------GLPESV 114 (426)
T ss_pred cCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccC--Cc--hhhhhhhheEccCccccc--------cccccc
Confidence 77889999998554321 22346999999999886331 11 113679999999987654 123467
Q ss_pred cEEeCCC
Q 018291 194 NDVEGDS 200 (358)
Q Consensus 194 ~~L~ls~ 200 (358)
+.|++++
T Consensus 115 e~L~L~~ 121 (426)
T PRK15386 115 RSLEIKG 121 (426)
T ss_pred ceEEeCC
Confidence 7777653
No 39
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.66 E-value=0.15 Score=32.03 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=11.0
Q ss_pred CccEEEeeCCCCChHHHHHHHH
Q 018291 115 SWEILDISGSDVSDFGLVKVAQ 136 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~ 136 (358)
+|++|||+++.|+|.|...+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHH
Confidence 4455555555555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.54 E-value=0.0081 Score=44.03 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=38.4
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCcc
Q 018291 139 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWE 202 (358)
Q Consensus 139 ~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~ 202 (358)
|+|++|+|++| +++.-.-. ...++++|++|+++++. ++.-.-. .-..+++|+.|+++++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N~-l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNNN-LTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT-TTTTGTTESEEEETSSS-ESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCCc-cCccCHH-HHcCCCCCCEEeCcCCc
Confidence 67899999987 46533222 23478999999999764 2211111 12458888888887654
No 41
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.34 E-value=0.059 Score=56.07 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhC-------CCCCEEeecCCCCCCHHHHHHHHhC---CCC-CceEEccCCCCCcHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMC-------KSLKAVDISCCDRITAAGVSEFLLH---CHS-LETLRCGGSPRSNHAA 182 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C-------~~L~~LdLs~C~~ITD~gl~~La~~---Cp~-L~~L~L~gC~~ItD~~ 182 (358)
+.++.++++.|.+.+.|...+.+.. .++++|+|++|. +|+.+...+... -+. +..|++. |-.+.|.+
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~-~n~l~d~g 249 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLA-SNKLGDVG 249 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHH-hcCcchHH
Confidence 3444555555533344443333222 235555555553 555444433322 222 3334554 33455555
Q ss_pred HHHHHhhCCCC----cEEeCCCccccchhhh-----hcccccccccc--cccCCHHHHHHH
Q 018291 183 RRCLGILKPKL----NDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNIDKDSIEMM 232 (358)
Q Consensus 183 l~~L~~~cp~L----~~L~ls~~~~~d~~~i-----~~~~~sL~~L~--C~~ITd~~l~~L 232 (358)
++.+....+.+ +++++..+.+++.+.- -..++.++.+. +..++|.++..+
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 55554443333 5555555555554431 22334555554 555666655444
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.00 E-value=0.029 Score=53.55 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=58.9
Q ss_pred cCccEEEeeCCCC-ChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcH-HHHHHHHhhCC
Q 018291 114 SSWEILDISGSDV-SDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKP 191 (358)
Q Consensus 114 ~~L~~L~Ls~c~I-tD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD-~~l~~L~~~cp 191 (358)
..|+.|++.++.+ |-.++ ...|+|+.|+++.-..--..|+..++..||+|++|++++-. |.+ ..+..+. ..+
T Consensus 43 ~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~-~l~ 116 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK-ELE 116 (260)
T ss_pred cchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh-hhc
Confidence 3455555555532 22222 23578899999853223445788888889999999998763 332 2333333 345
Q ss_pred CCcEEeCCCccccch----hhhhcccccccccc
Q 018291 192 KLNDVEGDSWEELVN----TDIGHGAQSLRWFV 220 (358)
Q Consensus 192 ~L~~L~ls~~~~~d~----~~i~~~~~sL~~L~ 220 (358)
+|..|++..|..+.. .-+..-.++|++|+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 677777766655431 11344556666666
No 43
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=0.04 Score=53.67 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=49.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcH---HHHHHHHhhC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNH---AARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD---~~l~~L~~~c 190 (358)
+.|+.|.||=+.|+. |.. ..+|.+|++|.|.. +.|.|-.=.+-.++.|+|++|.|...+-... .-...+.+.+
T Consensus 41 p~lEVLsLSvNkIss--L~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISS--LAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred ccceeEEeecccccc--chh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 777777777776653 222 24678888888775 4465544333346788888888775443333 3334455677
Q ss_pred CCCcEEe
Q 018291 191 PKLNDVE 197 (358)
Q Consensus 191 p~L~~L~ 197 (358)
|+|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 8888775
No 44
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=90.81 E-value=0.075 Score=56.30 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=49.8
Q ss_pred CCCCCceEEccCC--CCCcHHHHHHHHhhCCCCcEEeCCCcccc--chhhhhcccccccccc------cccCCHHHHHHH
Q 018291 163 HCHSLETLRCGGS--PRSNHAARRCLGILKPKLNDVEGDSWEEL--VNTDIGHGAQSLRWFV------WPNIDKDSIEMM 232 (358)
Q Consensus 163 ~Cp~L~~L~L~gC--~~ItD~~l~~L~~~cp~L~~L~ls~~~~~--d~~~i~~~~~sL~~L~------C~~ITd~~l~~L 232 (358)
+|++|++|+|+.- ......++..+. .|+.|+++...+. .++. -.|..+|+.|+ -.-|-| +-.+.
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~----~Le~LnLs~Nsi~~l~e~a-f~~lssL~~LdLr~N~ls~~IED-aa~~f 388 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLS----QLEELNLSHNSIDHLAEGA-FVGLSSLHKLDLRSNELSWCIED-AAVAF 388 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHH----HhhhhcccccchHHHHhhH-HHHhhhhhhhcCcCCeEEEEEec-chhhh
Confidence 6777777777654 233444444433 4666666654433 2222 34667888887 112445 33333
Q ss_pred HhcCCCceecCCCCceeecCCC---CCcccccc
Q 018291 233 STECPRIIVNPKPSPFGFRGFE---VPREAFPD 262 (358)
Q Consensus 233 ~~~Cp~L~~~p~~~~l~l~gC~---~s~eal~~ 262 (358)
.+-|.|+. |.|.|-. ++..|+..
T Consensus 389 -~gl~~Lrk------L~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 389 -NGLPSLRK------LRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred -ccchhhhh------eeecCceeeecchhhhcc
Confidence 34888998 9999887 55555443
No 45
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.98 E-value=0.55 Score=29.41 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=18.9
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhC
Q 018291 139 KSLKAVDISCCDRITAAGVSEFLLH 163 (358)
Q Consensus 139 ~~L~~LdLs~C~~ITD~gl~~La~~ 163 (358)
++|++|||+++ .++|+|+..|++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 57888888874 5888888888764
No 46
>PLN03150 hypothetical protein; Provisional
Probab=87.16 E-value=0.71 Score=49.56 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=54.8
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
.++.|+|+++.++-.--..+ ..+++|+.|+|+++. ++.. +-.....+++|+.|+|+++.- +...-..++ .+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~-l~g~-iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~-~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNS-IRGN-IPPSLGSITSLEVLDLSYNSF-NGSIPESLG-QLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCc-ccCc-CChHHhCCCCCCEEECCCCCC-CCCCchHHh-cCCCCC
Confidence 37789999886542222223 368999999999864 5432 222235789999999998843 221112333 578999
Q ss_pred EEeCCCcccc
Q 018291 195 DVEGDSWEEL 204 (358)
Q Consensus 195 ~L~ls~~~~~ 204 (358)
.|++++....
T Consensus 494 ~L~Ls~N~l~ 503 (623)
T PLN03150 494 ILNLNGNSLS 503 (623)
T ss_pred EEECcCCccc
Confidence 9999876543
No 47
>PLN03150 hypothetical protein; Provisional
Probab=87.10 E-value=0.71 Score=49.58 Aligned_cols=77 Identities=9% Similarity=-0.038 Sum_probs=45.2
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhh-hhcccccccc
Q 018291 140 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRW 218 (358)
Q Consensus 140 ~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~-i~~~~~sL~~ 218 (358)
.+..|+|+++. ++..--..+ ..+++|+.|+|+++.- +...-..+ ..+++|+.|++++........ .-..+++|+.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N~l-~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGNSI-RGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCCcc-cCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 47788888764 432211223 3678899999988742 21111123 357889999988776553211 1235667887
Q ss_pred cc
Q 018291 219 FV 220 (358)
Q Consensus 219 L~ 220 (358)
|+
T Consensus 495 L~ 496 (623)
T PLN03150 495 LN 496 (623)
T ss_pred EE
Confidence 76
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=86.62 E-value=0.14 Score=55.65 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=55.2
Q ss_pred CccEEEeeCCC--CChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC--CCcHHHHHHHHhhC
Q 018291 115 SWEILDISGSD--VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP--RSNHAARRCLGILK 190 (358)
Q Consensus 115 ~L~~L~Ls~c~--ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~--~ItD~~l~~L~~~c 190 (358)
.|...+.+.+. .-|.+|..+ |.|++|||++ +++++.. ..+.|+.|++|||++.. .+..-+. ..|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll----~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~----~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLL----PALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSM----VGC 232 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHH----HHhhhhccch-hhhhhhH---HHHhcccccccccccchhccccccch----hhh
Confidence 34556666663 347777554 7899999999 7888865 34679999999998642 1211111 124
Q ss_pred CCCcEEeCCCccccchhhhhcccccccccc
Q 018291 191 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV 220 (358)
Q Consensus 191 p~L~~L~ls~~~~~d~~~i~~~~~sL~~L~ 220 (358)
. |..|++.+...+.--.| ..+++|+.|+
T Consensus 233 ~-L~~L~lrnN~l~tL~gi-e~LksL~~LD 260 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTTLRGI-ENLKSLYGLD 260 (1096)
T ss_pred h-heeeeecccHHHhhhhH-Hhhhhhhccc
Confidence 3 77777776554432211 2344555554
No 49
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=86.33 E-value=0.45 Score=52.45 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=41.8
Q ss_pred CCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceec
Q 018291 165 HSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVN 242 (358)
Q Consensus 165 p~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~ 242 (358)
++|+.|+++++. ++ .+....++|+.|++++..+..- .....+|+.|+ ..+|+. +-.-...+++|..
T Consensus 382 ~~L~~LdLs~N~-Lt-----~LP~l~s~L~~LdLS~N~LssI---P~l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~- 449 (788)
T PRK15387 382 SGLKELIVSGNR-LT-----SLPVLPSELKELMVSGNRLTSL---PMLPSGLLSLSVYRNQLTR--LPESLIHLSSETT- 449 (788)
T ss_pred cccceEEecCCc-cc-----CCCCcccCCCEEEccCCcCCCC---CcchhhhhhhhhccCcccc--cChHHhhccCCCe-
Confidence 457777776653 22 1222235677777776654321 11223455554 223431 1111236788888
Q ss_pred CCCCceeecCCCCCccccc
Q 018291 243 PKPSPFGFRGFEVPREAFP 261 (358)
Q Consensus 243 p~~~~l~l~gC~~s~eal~ 261 (358)
+++.+++++...+.
T Consensus 450 -----LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 450 -----VNLEGNPLSERTLQ 463 (788)
T ss_pred -----EECCCCCCCchHHH
Confidence 99999996654433
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.16 E-value=0.84 Score=45.10 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=83.8
Q ss_pred cCccEEEeeCCCCChHH-HHHHHHhCCCCCEEeecCCCCCCHHH-HHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCC
Q 018291 114 SSWEILDISGSDVSDFG-LVKVAQMCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 191 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~g-L~~la~~C~~L~~LdLs~C~~ITD~g-l~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp 191 (358)
..++-|.+-||.|...| +..++..|..+++|||.+ +.|+|=. |..|.++.|.|++|||+.-+--.+. ..+..-..
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLK 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCccccc
Confidence 35667888899775544 567889999999999998 7898854 8899999999999999944333321 12211234
Q ss_pred CCcEEeCCCccc--cchhhhhcccccccccc-------cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 192 KLNDVEGDSWEE--LVNTDIGHGAQSLRWFV-------WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 192 ~L~~L~ls~~~~--~d~~~i~~~~~sL~~L~-------C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
+|+.|-+.++.. +.........+.+++|| -.+++|+..+.+. |.+.. +++-+|+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s---~~v~t------lh~~~c~ 184 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS---TEVLT------LHQLPCL 184 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc---hhhhh------hhcCCcH
Confidence 677776665422 11111123334445553 2356666666543 56677 8888898
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.05 E-value=4.6 Score=39.66 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=74.9
Q ss_pred Hhhc-cCccEEEeeCCCCCh---HHHHHHHHhCCCCCEEeecCCCCCCH------HHHHHHH-----hCCCCCceEEccC
Q 018291 110 SLAD-SSWEILDISGSDVSD---FGLVKVAQMCKSLKAVDISCCDRITA------AGVSEFL-----LHCHSLETLRCGG 174 (358)
Q Consensus 110 ~l~~-~~L~~L~Ls~c~ItD---~gL~~la~~C~~L~~LdLs~C~~ITD------~gl~~La-----~~Cp~L~~L~L~g 174 (358)
.++. |.|+.++||++-++- .-+.-+..+-..|.+|.|++|.--.- .++..++ ..-|.|++..++.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3444 888888888874432 33333444567788888888752221 1233333 2457788887765
Q ss_pred CCCCcH--HHHHHHHhhCCCCcEEeCCCccccchhhh------hccccccccccc--ccCCHHHHHHHH---hcCCCcee
Q 018291 175 SPRSNH--AARRCLGILKPKLNDVEGDSWEELVNTDI------GHGAQSLRWFVW--PNIDKDSIEMMS---TECPRIIV 241 (358)
Q Consensus 175 C~~ItD--~~l~~L~~~cp~L~~L~ls~~~~~d~~~i------~~~~~sL~~L~C--~~ITd~~l~~L~---~~Cp~L~~ 241 (358)
..--+. .-..+.-+.-..|+.+.+-...+-..|+- ...|++|+.|+- ..+|-.|-..++ ..-|.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 432111 11111112224566666544444444431 234566666662 234444433333 23345666
Q ss_pred cCCCCceeecCCCCCcccccc
Q 018291 242 NPKPSPFGFRGFEVPREAFPD 262 (358)
Q Consensus 242 ~p~~~~l~l~gC~~s~eal~~ 262 (358)
+++..|-.+.++..+
T Consensus 247 ------L~lnDClls~~G~~~ 261 (388)
T COG5238 247 ------LRLNDCLLSNEGVKS 261 (388)
T ss_pred ------ccccchhhccccHHH
Confidence 777777755555444
No 52
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=85.76 E-value=1.6 Score=48.14 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhhcccccccc
Q 018291 139 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRW 218 (358)
Q Consensus 139 ~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~ 218 (358)
++|+.|++++|. ++. +-. ..+++|+.|++++|. ++. +- ....+.|+.|+++++..+.-.. ....+|+.
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~-L~~--LP--~~lp~~L~~LdLs~N~Lt~LP~--~l~~sL~~ 392 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQ-ITV--LP--ETLPPTITTLDVSRNALTNLPE--NLPAALQI 392 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCC-CCc--CC--hhhcCCcCEEECCCCcCCCCCH--hHHHHHHH
Confidence 567777777763 332 111 124678888888774 331 00 0113578888887766542110 01124555
Q ss_pred cc--cccCC--HHHHHHHHhcCCCceecCCCCceeecCCCCCccccccc
Q 018291 219 FV--WPNID--KDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDI 263 (358)
Q Consensus 219 L~--C~~IT--d~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~eal~~~ 263 (358)
|+ ..+++ ..++..+...+|++.. +++.+-+++...++.+
T Consensus 393 LdLs~N~L~~LP~sl~~~~~~~~~l~~------L~L~~Npls~~tl~~L 435 (754)
T PRK15370 393 MQASRNNLVRLPESLPHFRGEGPQPTR------IIVEYNPFSERTIQNM 435 (754)
T ss_pred HhhccCCcccCchhHHHHhhcCCCccE------EEeeCCCccHHHHHHH
Confidence 54 23333 2345566667788888 8999988776666543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=83.88 E-value=0.7 Score=43.18 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=40.4
Q ss_pred hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhh----hhcc
Q 018291 137 MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTD----IGHG 212 (358)
Q Consensus 137 ~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~----i~~~ 212 (358)
+.+.|+.|.|.+ ++||+-+= .|....|+|.+|-|.+-.-..-.-+.-++ .||+|+.|.+-+..+.+..- +-..
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CccccceEEecC-Ccceeecc-chhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEEe
Confidence 345555555554 34543221 12233455555555543222222223333 25555555544444333221 1234
Q ss_pred cccccccccccCCHHHH
Q 018291 213 AQSLRWFVWPNIDKDSI 229 (358)
Q Consensus 213 ~~sL~~L~C~~ITd~~l 229 (358)
.++|+.|+..+||-+--
T Consensus 139 lp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 139 LPSLRTLDFQKVTRKER 155 (233)
T ss_pred cCcceEeehhhhhHHHH
Confidence 56666666666765443
No 54
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=83.64 E-value=1.2 Score=49.35 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=8.4
Q ss_pred CCCCcEEeCCCccc
Q 018291 190 KPKLNDVEGDSWEE 203 (358)
Q Consensus 190 cp~L~~L~ls~~~~ 203 (358)
.++|+.|++++..+
T Consensus 301 p~~L~~LdLS~N~L 314 (788)
T PRK15387 301 PPGLQELSVSDNQL 314 (788)
T ss_pred ccccceeECCCCcc
Confidence 35677777665543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=83.01 E-value=0.76 Score=42.95 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=38.2
Q ss_pred cCccEEEeeCCCCC--hHHHHHHHHhCCCCCEEeecCCCCCCHHH-HHHHHhCCCCCceEEccCCCCCcHHH-HHHHHhh
Q 018291 114 SSWEILDISGSDVS--DFGLVKVAQMCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSPRSNHAA-RRCLGIL 189 (358)
Q Consensus 114 ~~L~~L~Ls~c~It--D~gL~~la~~C~~L~~LdLs~C~~ITD~g-l~~La~~Cp~L~~L~L~gC~~ItD~~-l~~L~~~ 189 (358)
+.|..|.|+.++|| |.+| ....|+|..|.|.+ ++|-.-| +.-++ .||.|++|.+-|-+.-.-.. ..++...
T Consensus 64 ~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTN-NSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred cccceEEecCCcceeeccch---hhhccccceEEecC-cchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEEe
Confidence 45566666666555 2222 23345666666655 2222222 33333 46666666655543221111 1123334
Q ss_pred CCCCcEEeCCCc
Q 018291 190 KPKLNDVEGDSW 201 (358)
Q Consensus 190 cp~L~~L~ls~~ 201 (358)
.|+|+.||+...
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 566666665543
No 56
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=82.66 E-value=0.78 Score=51.05 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=45.6
Q ss_pred cCccEEEeeCCC---CChHHH-----HHHH------------HhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEcc
Q 018291 114 SSWEILDISGSD---VSDFGL-----VKVA------------QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCG 173 (358)
Q Consensus 114 ~~L~~L~Ls~c~---ItD~gL-----~~la------------~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~ 173 (358)
+.|++|+|||+. +.|... ..+- ...+.|+.+||| |++++...+.+.... |+|++||++
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeecc
Confidence 778999999984 443322 1111 125889999999 789999888876654 899999999
Q ss_pred CCCC
Q 018291 174 GSPR 177 (358)
Q Consensus 174 gC~~ 177 (358)
|-.+
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 8873
No 57
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=81.65 E-value=0.39 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=16.8
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 139 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 139 ~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.||||+ ++||.-.+.. ..-.+|++|+++..
T Consensus 245 ~~LrrLNLS~-N~iteL~~~~--~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 245 RNLRRLNLSG-NKITELNMTE--GEWENLETLNLSRN 278 (1255)
T ss_pred hhhheeccCc-CceeeeeccH--HHHhhhhhhccccc
Confidence 5566666665 4455432211 11245666666643
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=75.42 E-value=2.2 Score=23.61 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=5.1
Q ss_pred CCCEEeecCCC
Q 018291 140 SLKAVDISCCD 150 (358)
Q Consensus 140 ~L~~LdLs~C~ 150 (358)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555553
No 59
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=74.51 E-value=7.3 Score=43.04 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=4.6
Q ss_pred CCceEEccCC
Q 018291 166 SLETLRCGGS 175 (358)
Q Consensus 166 ~L~~L~L~gC 175 (358)
+|+.|++++|
T Consensus 284 sL~~L~Ls~N 293 (754)
T PRK15370 284 ELRYLSVYDN 293 (754)
T ss_pred CCcEEECCCC
Confidence 4444444444
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.51 E-value=1.9 Score=42.27 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=75.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
.+.+.|++.||+++|-.+ ....|.|+.|.||- ++|+. +..+ .+|.+|++|.|....--+-.-+.++ .++|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSv-NkIss--L~pl-~rCtrLkElYLRkN~I~sldEL~YL-knlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSV-NKISS--LAPL-QRCTRLKELYLRKNCIESLDELEYL-KNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHHHH---HHhcccceeEEeec-ccccc--chhH-HHHHHHHHHHHHhcccccHHHHHHH-hcCchh
Confidence 466789999999999765 56789999999995 56653 4443 4799999999885432222334444 468999
Q ss_pred cEEeCCCcc--ccc-h---hhhhcccccccccccccCCHHHHHHHHh
Q 018291 194 NDVEGDSWE--ELV-N---TDIGHGAQSLRWFVWPNIDKDSIEMMST 234 (358)
Q Consensus 194 ~~L~ls~~~--~~d-~---~~i~~~~~sL~~L~C~~ITd~~l~~L~~ 234 (358)
+.|-+.... ... . ..+-..+++|+.|+-..+|.+-++.-..
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr 137 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALR 137 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHh
Confidence 888664321 111 1 1124567888999888888877765443
No 61
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.82 E-value=4.9 Score=42.53 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=72.9
Q ss_pred CChHHHHH-HHHHhhhcCCCCHHHHHHhhc--cCccEEEeeCCCC-ChHHHHHHHHhCCCCCEEeecCCC-CC-CHHHHH
Q 018291 85 FPVDIKIA-IASIARRRKLLADDVIMSLAD--SSWEILDISGSDV-SDFGLVKVAQMCKSLKAVDISCCD-RI-TAAGVS 158 (358)
Q Consensus 85 LP~~~~~~-ll~i~~~~~~ltD~~L~~l~~--~~L~~L~Ls~c~I-tD~gL~~la~~C~~L~~LdLs~C~-~I-TD~gl~ 158 (358)
+.++.+.+ +...+..+..+... +..+.. |.+..|+|+++++ .=+++..|++.-|+|..|+|++-. .+ ++.-+.
T Consensus 187 ~DPel~~~di~~~l~~rn~M~~~-L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~ 265 (585)
T KOG3763|consen 187 FDPELVNRDILMVLNKRNCMAAV-LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD 265 (585)
T ss_pred cChhhhhccchhhcccchhhHHH-HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh
Confidence 33444433 33344444434322 233333 7889999999843 567788899999999999999852 22 233344
Q ss_pred HHHhCCCCCceEEccCCCCCcH-----HHHHHHHhhCCCCcEEeC
Q 018291 159 EFLLHCHSLETLRCGGSPRSNH-----AARRCLGILKPKLNDVEG 198 (358)
Q Consensus 159 ~La~~Cp~L~~L~L~gC~~ItD-----~~l~~L~~~cp~L~~L~l 198 (358)
.+ .-..|++|-+.|-+-.++ +-+.+|-...|+|..||-
T Consensus 266 K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 266 KL--KGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hh--cCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecC
Confidence 33 246699999999876653 446678888999988863
No 62
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=73.15 E-value=0.56 Score=50.46 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=47.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCH--HHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA--AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP 191 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD--~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp 191 (358)
.+|+.|.+++.+=|-..+..-.....+|..+||| |++++- +.+. ..++|+.|+|++. .||.-.+. ++ .-.
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly----~l~~LrrLNLS~N-~iteL~~~-~~-~W~ 268 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLY----KLRNLRRLNLSGN-KITELNMT-EG-EWE 268 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHh----hhhhhheeccCcC-ceeeeecc-HH-HHh
Confidence 5677788888643333333333456788999998 465552 2332 4678999999975 34432111 11 123
Q ss_pred CCcEEeCCCcccc
Q 018291 192 KLNDVEGDSWEEL 204 (358)
Q Consensus 192 ~L~~L~ls~~~~~ 204 (358)
+|+.|++|..+.+
T Consensus 269 ~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT 281 (1255)
T ss_pred hhhhhccccchhc
Confidence 4666666655443
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=62.62 E-value=9.5 Score=42.93 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=18.7
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCC
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRI 152 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~I 152 (358)
+.|++|-+.++ .--..+-.....+.|.|+.|||++|..+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 44666666554 2001111112345667777777766543
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=61.65 E-value=8.8 Score=38.23 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=51.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
|.++.|++|.+.|+.-+= + +..++|++||||+-.--.-.|+. ...-|+++|+|++..--+-.|+.. +-.|
T Consensus 307 Pkir~L~lS~N~i~~v~n--L-a~L~~L~~LDLS~N~Ls~~~Gwh---~KLGNIKtL~La~N~iE~LSGL~K----LYSL 376 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQN--L-AELPQLQLLDLSGNLLAECVGWH---LKLGNIKTLKLAQNKIETLSGLRK----LYSL 376 (490)
T ss_pred cceeEEeccccceeeehh--h-hhcccceEeecccchhHhhhhhH---hhhcCEeeeehhhhhHhhhhhhHh----hhhh
Confidence 899999999996654332 2 46799999999984322223443 346789999998754222233332 2346
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
..||+.+.++-
T Consensus 377 vnLDl~~N~Ie 387 (490)
T KOG1259|consen 377 VNLDLSSNQIE 387 (490)
T ss_pred eeccccccchh
Confidence 66777765543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=59.68 E-value=3.9 Score=23.91 Aligned_cols=9 Identities=33% Similarity=0.398 Sum_probs=4.7
Q ss_pred CCEEeecCC
Q 018291 141 LKAVDISCC 149 (358)
Q Consensus 141 L~~LdLs~C 149 (358)
|++|||++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555554
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=52.48 E-value=4.5 Score=40.94 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=6.4
Q ss_pred CCCCceEEccCC
Q 018291 164 CHSLETLRCGGS 175 (358)
Q Consensus 164 Cp~L~~L~L~gC 175 (358)
+++|+.|+++++
T Consensus 161 l~~L~~l~l~~n 172 (414)
T KOG0531|consen 161 LKSLKLLDLSYN 172 (414)
T ss_pred chhhhcccCCcc
Confidence 455555555554
No 67
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=49.88 E-value=14 Score=22.80 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=9.6
Q ss_pred CCEEeecCCCCCCHHHHHHHHhCCC
Q 018291 141 LKAVDISCCDRITAAGVSEFLLHCH 165 (358)
Q Consensus 141 L~~LdLs~C~~ITD~gl~~La~~Cp 165 (358)
|+.|.|....--.+.++..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 3444444432222224444444443
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=46.80 E-value=15 Score=36.32 Aligned_cols=16 Identities=0% Similarity=0.007 Sum_probs=9.0
Q ss_pred HhcCCCceecCCCCceeecCCC
Q 018291 233 STECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 233 ~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
....+.++. +++.++.
T Consensus 251 ~~~l~~l~~------L~~s~n~ 266 (394)
T COG4886 251 IGNLSNLET------LDLSNNQ 266 (394)
T ss_pred hccccccce------ecccccc
Confidence 344555666 6666665
No 69
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=45.29 E-value=17 Score=40.88 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=47.5
Q ss_pred cCccEEEeeCC-CCC--hHHHHHHHHhCCCCCEEeecCCCCCC--HHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHh
Q 018291 114 SSWEILDISGS-DVS--DFGLVKVAQMCKSLKAVDISCCDRIT--AAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 188 (358)
Q Consensus 114 ~~L~~L~Ls~c-~It--D~gL~~la~~C~~L~~LdLs~C~~IT--D~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~ 188 (358)
|.|..|||++| .++ ...+ ..+-+|+.|||+++ .|+ ..|+..| ..|.+||+..+....-. ..+..
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~~t-~I~~LP~~l~~L----k~L~~Lnl~~~~~l~~~--~~i~~ 639 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLSDT-GISHLPSGLGNL----KKLIYLNLEVTGRLESI--PGILL 639 (889)
T ss_pred cceEEEECCCCCccCcCChHH----hhhhhhhcccccCC-CccccchHHHHH----Hhhheeccccccccccc--cchhh
Confidence 88999999998 543 2233 23567889999875 466 4555543 46888887765432211 22333
Q ss_pred hCCCCcEEeCCCc
Q 018291 189 LKPKLNDVEGDSW 201 (358)
Q Consensus 189 ~cp~L~~L~ls~~ 201 (358)
.+++|++|.+-..
T Consensus 640 ~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 640 ELQSLRVLRLPRS 652 (889)
T ss_pred hcccccEEEeecc
Confidence 4677777766443
No 70
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=45.23 E-value=12 Score=38.75 Aligned_cols=138 Identities=15% Similarity=0.077 Sum_probs=76.9
Q ss_pred CCCHHHHHHhhccCccEEEeeCCCCC--hHHH--------------------HHHHHhCCCCCEEeecCCCCCCHHHHHH
Q 018291 102 LLADDVIMSLADSSWEILDISGSDVS--DFGL--------------------VKVAQMCKSLKAVDISCCDRITAAGVSE 159 (358)
Q Consensus 102 ~ltD~~L~~l~~~~L~~L~Ls~c~It--D~gL--------------------~~la~~C~~L~~LdLs~C~~ITD~gl~~ 159 (358)
.+.|+++.+-.+.-.++++++++.+. ..++ .......++|..|+|++ +-+.|--. +
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~-e 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPE-E 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcch-h
Confidence 46778887777777888888887432 1122 22334567888888886 22222111 1
Q ss_pred HHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeC---CCccc--cchhhhhcccccccccccccCCHHHHHHHHh
Q 018291 160 FLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEG---DSWEE--LVNTDIGHGAQSLRWFVWPNIDKDSIEMMST 234 (358)
Q Consensus 160 La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~l---s~~~~--~d~~~i~~~~~sL~~L~C~~ITd~~l~~L~~ 234 (358)
+. ....|+.||++.- .++.+.+.|..++.+.. +..++ +|... -.+..+|..|+-.+=+-..+-.+..
T Consensus 454 ~~-~lv~Lq~LnlS~N------rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~-l~nm~nL~tLDL~nNdlq~IPp~Lg 525 (565)
T KOG0472|consen 454 MG-SLVRLQTLNLSFN------RFRMLPECLYELQTLETLLASNNQIGSVDPSG-LKNMRNLTTLDLQNNDLQQIPPILG 525 (565)
T ss_pred hh-hhhhhheeccccc------ccccchHHHhhHHHHHHHHhccccccccChHH-hhhhhhcceeccCCCchhhCChhhc
Confidence 11 2234888888754 23334444444444321 11111 12210 1334566666644444455667788
Q ss_pred cCCCceecCCCCceeecCCCC
Q 018291 235 ECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 235 ~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+|.+|+. +.+.|-|+
T Consensus 526 nmtnL~h------LeL~gNpf 540 (565)
T KOG0472|consen 526 NMTNLRH------LELDGNPF 540 (565)
T ss_pred cccceeE------EEecCCcc
Confidence 9999999 99999993
No 71
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=43.77 E-value=68 Score=33.20 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=44.0
Q ss_pred HHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchh
Q 018291 132 VKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNT 207 (358)
Q Consensus 132 ~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~ 207 (358)
..-....|+|+.|||++ ++||.-.=.++. ....|++|.|.+-. +..- -..+-+....|+.|++.+.+++...
T Consensus 267 ~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe-~~a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSN-NKITRIEDGAFE-GAAELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred HHHHhhcccceEeccCC-Cccchhhhhhhc-chhhhhhhhcCcch-HHHH-HHHhhhccccceeeeecCCeeEEEe
Confidence 34456678999999998 567654333332 34568888777542 1110 1112345678899999888776644
No 72
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.08 E-value=31 Score=24.18 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHhhHHHHHhhhhhhhcCCChHHHHHH
Q 018291 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~~~i~dl~~~l~~LP~~~~~~l 93 (358)
.++||+++|=..|.++... ..+.. .-||..+++.+
T Consensus 2 k~~SLQ~LCR~~I~~~t~~--~~I~~--LPLP~~Lk~yL 36 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTPV--YLIDK--LPLPVSIKSHL 36 (43)
T ss_pred ccccHHHHHHHHHHHhCCc--chhhh--CCCCHHHHHHH
Confidence 4789999999999888752 11211 12777777654
No 73
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=41.84 E-value=21 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHhhHHHHHhhhhhhhcCCChHHHHHH
Q 018291 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~~~i~dl~~~l~~LP~~~~~~l 93 (358)
.++||++||-..|.+++.. +.+.. .-+|..+++-+
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~--~~i~~--LpLP~~Lk~yL 36 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRR--DLIDQ--LPLPRRLKDYL 36 (39)
T ss_pred CCCCHHHHHHHHHHHHccc--ccccc--CCCCHHHHHHH
Confidence 5889999999999888742 12111 23667665543
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=39.56 E-value=18 Score=35.80 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=32.9
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
+|+.|+++++.+.+-- .-...+++|+.|+++++ ++++-.-. ....++|+.|++++.
T Consensus 141 nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N 196 (394)
T COG4886 141 NLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGN 196 (394)
T ss_pred hcccccccccchhhhh--hhhhccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCC
Confidence 6777777776555431 01235777777777775 35553322 114567777777765
No 75
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=39.15 E-value=26 Score=24.31 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHhhHHH
Q 018291 55 KPPSLVSLCLGIVGKHLED 73 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~~ 73 (358)
.++||++||=..|.+++..
T Consensus 2 ~v~SLQHLCR~~In~~~~~ 20 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDS 20 (42)
T ss_pred CcccHHHHHHHHHHHhcCc
Confidence 3689999999999888653
No 76
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=37.21 E-value=26 Score=24.19 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCCCchHHHHHHHHHHhhHHHHHhhhhhhhcCCChHHHHHH
Q 018291 52 EKSKPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAI 93 (358)
Q Consensus 52 ~~~~~~SL~~LCl~~i~~~l~~~i~dl~~~l~~LP~~~~~~l 93 (358)
....++||++||-..|.+++.. ..+. ..-+|..+++-+
T Consensus 3 r~~~~~sLqhLCR~~I~~~~~~--~~i~--~LpLP~~lk~yL 40 (43)
T smart00253 3 RPSNVPSLQHLCRFTIRRCTRT--DQIK--TLPLPPKLKDYL 40 (43)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC--cCcc--cCCCCHHHHHHH
Confidence 3567899999999888877653 1111 123777666543
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=36.46 E-value=17 Score=37.50 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=39.0
Q ss_pred hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCcc
Q 018291 137 MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWE 202 (358)
Q Consensus 137 ~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~ 202 (358)
.|++|..|++++| .++. +...=++|++|++++|..++.- . ....+.|+.|++++|.
T Consensus 50 ~~~~l~~L~Is~c-~L~s-----LP~LP~sLtsL~Lsnc~nLtsL--P--~~LP~nLe~L~Ls~Cs 105 (426)
T PRK15386 50 EARASGRLYIKDC-DIES-----LPVLPNELTEITIENCNNLTTL--P--GSIPEGLEKLTVCHCP 105 (426)
T ss_pred HhcCCCEEEeCCC-CCcc-----cCCCCCCCcEEEccCCCCcccC--C--chhhhhhhheEccCcc
Confidence 4899999999999 4443 3322346999999999876321 1 1124578999998874
No 78
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=34.21 E-value=32 Score=24.06 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHhhHHHHHhhhhhhhcCCChHHHHHHH
Q 018291 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIA 94 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~~~i~dl~~~l~~LP~~~~~~ll 94 (358)
+++||++||=..|..++... .+.. .-||..+++-+-
T Consensus 2 ~~~sLQhLCR~tI~~~~~~~--~i~~--lpLP~~LKdyL~ 37 (43)
T cd03735 2 RVRPLQELCRKSIVATFGRE--NLAR--IPLNPVLKDYLK 37 (43)
T ss_pred CccCHHHHHHHHHHHhcCcc--cccc--CcCCHHHHHHHH
Confidence 47799999999998886521 1111 237776665443
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.13 E-value=75 Score=33.95 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCc--cccchhhh-hcccccccccc------cccCCHHH
Q 018291 158 SEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW--EELVNTDI-GHGAQSLRWFV------WPNIDKDS 228 (358)
Q Consensus 158 ~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~--~~~d~~~i-~~~~~sL~~L~------C~~ITd~~ 228 (358)
..+..+-|.+..|+|+.-....-.++..|+..-|+|+.|++++. .+-++-.+ -.+...|++|. |...++.+
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 33334445555555554443334444455555555555555543 11111111 12233444443 66555543
Q ss_pred --HHHHHhcCCCcee
Q 018291 229 --IEMMSTECPRIIV 241 (358)
Q Consensus 229 --l~~L~~~Cp~L~~ 241 (358)
+.+|...-|+|..
T Consensus 291 ~yv~~i~~~FPKL~~ 305 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLR 305 (585)
T ss_pred HHHHHHHHhcchhee
Confidence 5567777777777
No 80
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=32.43 E-value=34 Score=23.41 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.7
Q ss_pred CCchHHHHHHHHHHhhHH
Q 018291 55 KPPSLVSLCLGIVGKHLE 72 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~ 72 (358)
.++||++||=..|..++.
T Consensus 2 ~v~SLQHLCR~~I~~~~~ 19 (39)
T cd03745 2 VLPSLRHLCRKALRHFLT 19 (39)
T ss_pred CcccHHHHHHHHHHHhcc
Confidence 368999999999888753
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=31.05 E-value=11 Score=38.02 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=50.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCH-HHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD-~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
.+++.|++.++.|.- +..+...|++|++|+|++ +.|++ .|+.. ++.|+.|++.++.-.+-.++. .++.
T Consensus 95 ~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~----~l~~ 163 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSF-NKITKLEGLST----LTLLKELNLSGNLISDISGLE----SLKS 163 (414)
T ss_pred cceeeeeccccchhh--cccchhhhhcchheeccc-cccccccchhh----ccchhhheeccCcchhccCCc----cchh
Confidence 678888888874421 111135689999999998 56665 24433 344999999887532222222 1667
Q ss_pred CcEEeCCCccccch
Q 018291 193 LNDVEGDSWEELVN 206 (358)
Q Consensus 193 L~~L~ls~~~~~d~ 206 (358)
|+.+++++..+++.
T Consensus 164 L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDI 177 (414)
T ss_pred hhcccCCcchhhhh
Confidence 77777777665543
No 82
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.61 E-value=73 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHhhHHHHHhhhhhhhcCCChHHHHHHH
Q 018291 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIAIA 94 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~~~i~dl~~~l~~LP~~~~~~ll 94 (358)
.++||++||=..|.+++.. ..+.. .-||..+++-+.
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~--~~i~~--LpLP~~Lk~yL~ 37 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTRI--DLIQK--LPLPNKMKGYLL 37 (41)
T ss_pred CcccHHHHHHHHHHHHcch--hhccc--CCCCHHHHHHHH
Confidence 4789999999998888642 22211 237777666543
No 83
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB6 interacts with the adaptor protein APS and recruits elongin B/C to the insulin receptor signaling complex. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=27.23 E-value=62 Score=22.59 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.3
Q ss_pred CCchHHHHHHHHHHhhHH
Q 018291 55 KPPSLVSLCLGIVGKHLE 72 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~ 72 (358)
.|+||++||=..|.+++.
T Consensus 2 ~P~sLqhLCR~~Ir~~lg 19 (44)
T cd03725 2 YPPPLKHLCRVFIRLCLR 19 (44)
T ss_pred CCcCHHHHHHHHHHHhcC
Confidence 578999999999887765
No 84
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=26.88 E-value=56 Score=27.17 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=6.2
Q ss_pred hhCCCCcEEeCCCc
Q 018291 188 ILKPKLNDVEGDSW 201 (358)
Q Consensus 188 ~~cp~L~~L~ls~~ 201 (358)
..|+.|.. +++.|
T Consensus 58 ~~~~~l~~-dls~w 70 (120)
T PF03382_consen 58 AGCSSLNQ-DLSNW 70 (120)
T ss_pred hhhhhcCC-Ccccc
Confidence 34555554 44444
No 85
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=25.84 E-value=57 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCchHHHHHHHHHHhhHH
Q 018291 55 KPPSLVSLCLGIVGKHLE 72 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~ 72 (358)
.++||++||=..|.+++.
T Consensus 2 ~v~sLqhLCR~~Ir~~~~ 19 (39)
T cd03733 2 VVSSLQHLCRMALRRVMT 19 (39)
T ss_pred CCCCHHHHHHHHHHHHcc
Confidence 478999999988887764
No 86
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.99 E-value=73 Score=21.78 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHhhHHHHHhhhhhhhcCCChHHHHH
Q 018291 55 KPPSLVSLCLGIVGKHLEDIIGDLDEIAINFPVDIKIA 92 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~~~i~dl~~~l~~LP~~~~~~ 92 (358)
.++||++||=..|.+++.. ..+.. ..||..+++-
T Consensus 2 ~v~sLQhLCR~~Ir~~~~~--~~i~~--LpLP~~Lk~Y 35 (40)
T cd03746 2 QVASLQHLCRMAIRRVMPT--QQVKE--LPIPSKLLEF 35 (40)
T ss_pred CCcCHHHHHHHHHHHHccc--ccccc--CCCCHHHHHH
Confidence 4789999999988877642 11211 2367765543
No 87
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=23.83 E-value=69 Score=22.11 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHhhHH
Q 018291 55 KPPSLVSLCLGIVGKHLE 72 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~ 72 (358)
.++||++||=-.|.+++.
T Consensus 2 ~~~sLQHLCR~~I~~~~~ 19 (41)
T cd03734 2 SARSLQHLCRLVINRLVT 19 (41)
T ss_pred CCccHHHHHHHHHHHhcC
Confidence 468999999998887764
No 88
>PF11065 DUF2866: Protein of unknown function (DUF2866); InterPro: IPR021294 This bacterial family of proteins have no known function.
Probab=23.23 E-value=52 Score=25.04 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=31.3
Q ss_pred eecCCCCCccccccccCCCcccccccccccccc--cccccCccCCCCCCCcchHHHHHHH
Q 018291 249 GFRGFEVPREAFPDITLDDPFVNDIDPSAWAVP--RFASMGISTSLLSPNELSMAEKFRL 306 (358)
Q Consensus 249 ~l~gC~~s~eal~~~~l~~~~~~~~~~~~W~v~--~~~~~~~~~~~~~~~~~~~~e~~~~ 306 (358)
.++||.+|..--+--+.. +-.+.|++. +..+|...| ...+|..|||..|.
T Consensus 2 ~lrgCRvS~Pi~~PWG~~------cRiVEW~i~~~g~~~RrvVp--a~~T~~EIa~~ir~ 53 (65)
T PF11065_consen 2 NLRGCRVSAPIQQPWGRG------CRIVEWTIDHDGRISRRVVP--ADSTEAEIAEAIRS 53 (65)
T ss_pred cccceeecCcccCCCCCc------eEEEEEEecCCcceeEEeec--ccCChHHHHHHHHc
Confidence 578899766544443333 466789443 233444443 47789999999875
No 89
>PF15444 TMEM247: Transmembrane protein 247
Probab=21.55 E-value=99 Score=28.34 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhhhhccchhHhhhHHHHHHHHHHHHHh
Q 018291 300 MAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWME 336 (358)
Q Consensus 300 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (358)
-.||.||-|+= +||+=--++|+||+|+.+.=+.+-
T Consensus 105 ELEKvRMEFEL--TrLKyLHeENERQRQHEevMeQLq 139 (218)
T PF15444_consen 105 ELEKVRMEFEL--TRLKYLHEENERQRQHEEVMEQLQ 139 (218)
T ss_pred HHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46999999985 688888999999999877655544
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=20.73 E-value=68 Score=18.93 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=6.5
Q ss_pred CccEEEeeCCC
Q 018291 115 SWEILDISGSD 125 (358)
Q Consensus 115 ~L~~L~Ls~c~ 125 (358)
+|+.|+|+++.
T Consensus 3 ~L~~L~L~~N~ 13 (26)
T smart00369 3 NLRELDLSNNQ 13 (26)
T ss_pred CCCEEECCCCc
Confidence 45666666653
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=20.73 E-value=68 Score=18.93 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=6.5
Q ss_pred CccEEEeeCCC
Q 018291 115 SWEILDISGSD 125 (358)
Q Consensus 115 ~L~~L~Ls~c~ 125 (358)
+|+.|+|+++.
T Consensus 3 ~L~~L~L~~N~ 13 (26)
T smart00370 3 NLRELDLSNNQ 13 (26)
T ss_pred CCCEEECCCCc
Confidence 45666666653
No 92
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.16 E-value=91 Score=21.41 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.3
Q ss_pred CCchHHHHHHHHHHhhHH
Q 018291 55 KPPSLVSLCLGIVGKHLE 72 (358)
Q Consensus 55 ~~~SL~~LCl~~i~~~l~ 72 (358)
.++||++||=..|.++..
T Consensus 2 ~~~sLQhLCR~~I~~~~~ 19 (41)
T cd03736 2 STPSLQHLCRITINKCTR 19 (41)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 478999999988876643
No 93
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=20.15 E-value=30 Score=30.94 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=51.6
Q ss_pred HHHHHHhhccCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHH
Q 018291 105 DDVIMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARR 184 (358)
Q Consensus 105 D~~L~~l~~~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~ 184 (358)
|..-.......|+.++|+++.+-+.- ..+....|-++.|||++ +.|+|--.+ +| ..|.|+.||++..+-. .-.+
T Consensus 44 davy~l~~~~el~~i~ls~N~fk~fp-~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aLr~lNl~~N~l~--~~p~ 117 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDNGFKKFP-KKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPALRSLNLRFNPLN--AEPR 117 (177)
T ss_pred HHHHHHhCCceEEEEecccchhhhCC-HHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHhhhcccccCccc--cchH
Confidence 33333333466667777766332221 14555677888899987 678887776 55 4788999998866533 2234
Q ss_pred HHHhhCCCCcEEeC
Q 018291 185 CLGILKPKLNDVEG 198 (358)
Q Consensus 185 ~L~~~cp~L~~L~l 198 (358)
.|+. +.+|-.|+.
T Consensus 118 vi~~-L~~l~~Lds 130 (177)
T KOG4579|consen 118 VIAP-LIKLDMLDS 130 (177)
T ss_pred HHHH-HHhHHHhcC
Confidence 4544 344444443
Done!