Query 018291
Match_columns 358
No_of_seqs 331 out of 1700
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4g_A ATP synthase subunit S, 99.7 2.8E-18 9.5E-23 153.4 7.7 106 114-241 61-171 (176)
2 2ast_B S-phase kinase-associat 99.6 1.1E-15 3.7E-20 145.0 12.8 155 102-264 129-292 (336)
3 3ogk_B Coronatine-insensitive 99.6 3.8E-15 1.3E-19 151.5 16.4 162 101-269 363-539 (592)
4 3e4g_A ATP synthase subunit S, 99.6 7.2E-16 2.5E-20 137.7 6.7 93 102-195 72-171 (176)
5 2ast_B S-phase kinase-associat 99.6 6.9E-15 2.3E-19 139.4 13.5 87 114-201 118-205 (336)
6 3ogk_B Coronatine-insensitive 99.6 4.6E-15 1.6E-19 150.9 12.8 172 103-281 329-526 (592)
7 2p1m_B Transport inhibitor res 99.6 7.5E-15 2.6E-19 149.2 13.9 129 125-261 358-499 (594)
8 2p1m_B Transport inhibitor res 99.6 4.8E-15 1.6E-19 150.7 12.2 155 101-264 357-527 (594)
9 3un9_A NLR family member X1; l 99.4 1.8E-12 6.2E-17 127.4 12.3 154 102-263 83-259 (372)
10 2ca6_A RAN GTPase-activating p 99.3 3.4E-11 1.2E-15 117.0 15.6 138 114-259 159-319 (386)
11 3un9_A NLR family member X1; l 99.3 4.8E-12 1.7E-16 124.4 9.5 150 103-260 61-228 (372)
12 2ca6_A RAN GTPase-activating p 99.3 1.9E-11 6.7E-16 118.7 11.1 150 102-259 105-290 (386)
13 1z7x_W Ribonuclease inhibitor; 99.2 6.1E-11 2.1E-15 116.8 11.5 136 114-257 227-384 (461)
14 1z7x_W Ribonuclease inhibitor; 99.1 3.5E-10 1.2E-14 111.3 13.7 155 101-263 13-190 (461)
15 1io0_A Tropomodulin; LRR prote 99.1 1.7E-09 5.7E-14 95.8 15.4 92 114-207 36-139 (185)
16 1io0_A Tropomodulin; LRR prote 99.0 4.4E-09 1.5E-13 93.0 12.4 107 102-210 48-170 (185)
17 3goz_A Leucine-rich repeat-con 98.9 7.8E-10 2.7E-14 106.8 5.4 159 114-280 109-296 (362)
18 3goz_A Leucine-rich repeat-con 98.9 1.8E-09 6.2E-14 104.2 5.8 154 114-275 80-260 (362)
19 2ra8_A Uncharacterized protein 98.8 2.6E-09 8.9E-14 104.9 4.8 139 114-264 172-328 (362)
20 2ra8_A Uncharacterized protein 98.7 3.7E-08 1.3E-12 96.6 8.1 124 112-236 191-331 (362)
21 2ell_A Acidic leucine-rich nuc 98.6 3.4E-09 1.2E-13 90.9 -0.8 130 114-255 24-159 (168)
22 2je0_A Acidic leucine-rich nuc 98.6 1.3E-08 4.5E-13 85.4 1.4 122 114-241 17-144 (149)
23 4ezg_A Putative uncharacterize 98.5 3.6E-08 1.2E-12 87.0 3.9 126 114-257 44-173 (197)
24 4ezg_A Putative uncharacterize 98.5 7.7E-08 2.6E-12 84.9 4.8 129 111-256 62-194 (197)
25 1pgv_A TMD-1, tropomodulin TMD 98.3 4.8E-06 1.6E-10 75.3 11.8 72 114-187 41-119 (197)
26 2je0_A Acidic leucine-rich nuc 98.3 5.7E-07 1.9E-11 75.3 4.4 100 114-220 42-146 (149)
27 4fmz_A Internalin; leucine ric 98.2 1.3E-06 4.4E-11 82.7 6.3 82 114-205 110-191 (347)
28 1pgv_A TMD-1, tropomodulin TMD 98.2 2.3E-05 7.8E-10 70.8 12.8 118 128-252 30-166 (197)
29 4glp_A Monocyte differentiatio 98.2 1.4E-06 4.8E-11 82.0 5.0 131 114-254 91-235 (310)
30 2ell_A Acidic leucine-rich nuc 98.1 5.5E-07 1.9E-11 76.9 1.5 100 114-220 49-153 (168)
31 4fmz_A Internalin; leucine ric 98.1 6E-06 2E-10 78.1 8.5 103 137-255 219-323 (347)
32 1a9n_A U2A', U2A'; complex (nu 98.1 1E-06 3.5E-11 76.1 2.6 138 103-254 4-151 (176)
33 4glp_A Monocyte differentiatio 98.0 8.3E-07 2.8E-11 83.5 0.6 88 114-204 117-210 (310)
34 1wwl_A Monocyte differentiatio 98.0 1.4E-06 4.7E-11 82.2 2.0 16 189-204 199-214 (312)
35 1xeu_A Internalin C; cellular 98.0 3.4E-06 1.2E-10 78.0 4.1 55 114-175 41-95 (263)
36 1wwl_A Monocyte differentiatio 98.0 4.3E-06 1.5E-10 78.8 4.9 132 114-256 149-287 (312)
37 1h6u_A Internalin H; cell adhe 97.9 7.3E-06 2.5E-10 77.4 5.5 57 189-255 149-207 (308)
38 1h6u_A Internalin H; cell adhe 97.9 1.2E-05 4E-10 75.9 6.3 124 111-255 103-229 (308)
39 1h6t_A Internalin B; cell adhe 97.9 1.4E-05 4.8E-10 74.9 6.7 80 114-204 68-147 (291)
40 2z7x_B TOLL-like receptor 1, v 97.9 7.1E-06 2.4E-10 82.1 4.6 57 114-175 302-358 (520)
41 1h6t_A Internalin B; cell adhe 97.9 6.6E-06 2.3E-10 77.1 3.9 125 111-256 86-213 (291)
42 1m9s_A Internalin B; cell inva 97.9 9.8E-06 3.4E-10 84.4 5.2 121 114-255 87-209 (605)
43 4fcg_A Uncharacterized protein 97.8 2.6E-06 9E-11 81.3 0.2 58 114-176 104-161 (328)
44 1o6v_A Internalin A; bacterial 97.8 3E-05 1E-09 76.9 7.5 101 137-255 263-365 (466)
45 1m9s_A Internalin B; cell inva 97.8 1.3E-05 4.4E-10 83.6 4.4 122 114-256 65-188 (605)
46 2z66_A Variable lymphocyte rec 97.8 7.1E-07 2.4E-11 83.3 -4.8 132 114-255 101-235 (306)
47 1ozn_A Reticulon 4 receptor; N 97.8 1.6E-06 5.4E-11 80.3 -2.4 132 114-256 56-190 (285)
48 4fcg_A Uncharacterized protein 97.8 2.8E-06 9.4E-11 81.1 -0.8 127 113-255 80-218 (328)
49 3v47_A TOLL-like receptor 5B a 97.8 1.8E-06 6.1E-11 84.7 -2.2 131 114-254 30-165 (455)
50 2z81_A CD282 antigen, TOLL-lik 97.8 4E-05 1.4E-09 76.8 7.6 87 114-202 310-398 (549)
51 3rfs_A Internalin B, repeat mo 97.7 8.4E-06 2.9E-10 75.2 2.2 128 114-255 63-193 (272)
52 2z7x_B TOLL-like receptor 1, v 97.7 2.5E-05 8.6E-10 78.1 5.6 131 114-256 324-457 (520)
53 3o53_A Protein LRIM1, AGAP0063 97.7 4.9E-07 1.7E-11 85.5 -6.7 129 114-256 120-250 (317)
54 1o6v_A Internalin A; bacterial 97.7 3.7E-05 1.3E-09 76.3 6.6 57 189-255 285-343 (466)
55 1ds9_A Outer arm dynein; leuci 97.7 9.5E-07 3.3E-11 77.8 -4.5 118 114-241 48-178 (198)
56 2z62_A TOLL-like receptor 4, v 97.7 1.6E-06 5.4E-11 79.9 -3.5 34 115-149 29-62 (276)
57 3rgz_A Protein brassinosteroid 97.7 2.8E-06 9.7E-11 90.1 -2.1 59 189-254 198-258 (768)
58 3rfs_A Internalin B, repeat mo 97.7 5.4E-06 1.8E-10 76.6 -0.0 59 114-175 85-143 (272)
59 3oja_A Leucine-rich immune mol 97.6 9.3E-07 3.2E-11 89.2 -6.4 129 114-256 120-250 (487)
60 2z63_A TOLL-like receptor 4, v 97.6 2.6E-06 8.7E-11 85.8 -3.4 86 114-204 28-113 (570)
61 1xeu_A Internalin C; cellular 97.6 1.5E-05 5.1E-10 73.7 2.1 124 110-255 58-184 (263)
62 1ozn_A Reticulon 4 receptor; N 97.6 6.2E-06 2.1E-10 76.2 -0.7 130 114-255 105-237 (285)
63 3v47_A TOLL-like receptor 5B a 97.6 6E-06 2.1E-10 80.9 -1.4 134 114-256 79-225 (455)
64 2z80_A TOLL-like receptor 2, v 97.6 8.4E-06 2.9E-10 77.8 -0.7 134 114-257 100-236 (353)
65 1a9n_A U2A', U2A'; complex (nu 97.5 3.2E-05 1.1E-09 66.6 2.8 108 114-228 42-154 (176)
66 4ecn_A Leucine-rich repeat pro 97.5 5.7E-05 1.9E-09 82.0 5.5 131 114-255 448-607 (876)
67 3o6n_A APL1; leucine-rich repe 97.5 1E-05 3.5E-10 78.1 -0.4 126 114-257 205-332 (390)
68 2z80_A TOLL-like receptor 2, v 97.5 6.7E-06 2.3E-10 78.5 -1.7 59 114-175 76-134 (353)
69 2z66_A Variable lymphocyte rec 97.5 1.3E-06 4.5E-11 81.5 -6.6 132 114-255 126-260 (306)
70 3j0a_A TOLL-like receptor 5; m 97.5 5.6E-06 1.9E-10 88.7 -3.2 87 114-204 24-110 (844)
71 3vq2_A TLR4, TOLL-like recepto 97.5 5.1E-06 1.7E-10 84.6 -3.8 59 114-175 56-114 (606)
72 1xku_A Decorin; proteoglycan, 97.5 6.8E-05 2.3E-09 70.6 4.2 60 114-175 121-181 (330)
73 3o53_A Protein LRIM1, AGAP0063 97.5 6.9E-06 2.4E-10 77.5 -2.7 128 114-254 144-273 (317)
74 3oja_A Leucine-rich immune mol 97.5 7.8E-06 2.7E-10 82.4 -2.6 127 114-256 99-227 (487)
75 2z81_A CD282 antigen, TOLL-lik 97.4 0.00055 1.9E-08 68.5 10.8 142 114-275 334-480 (549)
76 3zyi_A Leucine-rich repeat-con 97.4 2.2E-05 7.6E-10 77.6 -0.1 128 114-254 147-277 (452)
77 3oja_B Anopheles plasmodium-re 97.4 2E-05 7E-10 80.9 -0.4 122 115-254 233-356 (597)
78 1ds9_A Outer arm dynein; leuci 97.4 1.1E-05 3.6E-10 71.0 -2.2 106 114-226 70-186 (198)
79 4g8a_A TOLL-like receptor 4; l 97.4 9.7E-06 3.3E-10 81.9 -2.9 130 114-254 52-184 (635)
80 3zyj_A Leucine-rich repeat-con 97.4 1.7E-05 5.8E-10 78.1 -1.1 128 114-254 136-266 (440)
81 3rgz_A Protein brassinosteroid 97.4 1.8E-05 6E-10 83.9 -1.2 15 234-254 291-305 (768)
82 1ziw_A TOLL-like receptor 3; i 97.4 3.6E-05 1.2E-09 79.5 0.9 131 114-255 49-183 (680)
83 3bz5_A Internalin-J, INLJ; leu 97.4 8.2E-05 2.8E-09 74.4 3.5 77 114-203 106-182 (457)
84 3t6q_A CD180 antigen; protein- 97.4 8.9E-06 3.1E-10 82.8 -3.7 58 114-175 278-335 (606)
85 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 4.1E-05 1.4E-09 77.7 1.2 14 235-254 471-484 (562)
86 3o6n_A APL1; leucine-rich repe 97.3 2.4E-05 8.3E-10 75.5 -0.5 80 164-255 225-307 (390)
87 2xwt_C Thyrotropin receptor; s 97.3 2.5E-06 8.4E-11 77.0 -7.1 60 114-175 55-115 (239)
88 3m19_A Variable lymphocyte rec 97.3 2.4E-05 8.3E-10 71.2 -0.9 130 114-255 59-191 (251)
89 2o6q_A Variable lymphocyte rec 97.3 1.6E-05 5.5E-10 73.1 -2.2 12 164-175 132-143 (270)
90 3t6q_A CD180 antigen; protein- 97.3 1.5E-05 5E-10 81.2 -2.9 61 114-176 301-361 (606)
91 4ecn_A Leucine-rich repeat pro 97.3 0.00016 5.6E-09 78.5 4.9 130 114-256 491-632 (876)
92 2id5_A Lingo-1, leucine rich r 97.3 1E-05 3.5E-10 80.1 -4.2 130 114-255 56-188 (477)
93 2o6q_A Variable lymphocyte rec 97.3 1.8E-05 6.2E-10 72.8 -2.5 129 114-254 61-192 (270)
94 3m19_A Variable lymphocyte rec 97.3 1.8E-05 6E-10 72.1 -2.6 130 114-255 35-167 (251)
95 1dce_A Protein (RAB geranylger 97.2 9.2E-05 3.1E-09 76.4 2.4 124 108-241 435-564 (567)
96 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 0.00013 4.4E-09 74.0 3.1 153 106-275 322-480 (562)
97 2z63_A TOLL-like receptor 4, v 97.2 1.4E-05 4.7E-10 80.4 -4.0 17 233-255 466-482 (570)
98 2o6s_A Variable lymphocyte rec 97.2 2.5E-05 8.4E-10 68.8 -2.0 130 114-255 28-160 (208)
99 1ziw_A TOLL-like receptor 3; i 97.2 2.9E-05 9.8E-10 80.3 -1.9 131 114-256 25-158 (680)
100 3vq2_A TLR4, TOLL-like recepto 97.2 2E-05 6.9E-10 80.2 -3.4 38 234-277 445-482 (606)
101 2id5_A Lingo-1, leucine rich r 97.2 5.7E-05 1.9E-09 74.7 -0.2 133 110-254 75-211 (477)
102 3zyi_A Leucine-rich repeat-con 97.2 2.2E-05 7.6E-10 77.6 -3.2 59 114-175 99-157 (452)
103 4eco_A Uncharacterized protein 97.1 0.00012 4E-09 76.1 1.7 89 114-204 206-318 (636)
104 3e6j_A Variable lymphocyte rec 97.1 3.6E-05 1.2E-09 69.5 -2.1 130 114-255 40-171 (229)
105 1p9a_G Platelet glycoprotein I 97.1 4.2E-05 1.4E-09 71.7 -1.8 56 114-175 55-110 (290)
106 3oja_B Anopheles plasmodium-re 97.1 6.7E-05 2.3E-09 77.1 -0.5 105 139-257 232-338 (597)
107 3bz5_A Internalin-J, INLJ; leu 97.1 0.00023 7.9E-09 71.1 3.3 120 111-255 123-245 (457)
108 3zyj_A Leucine-rich repeat-con 97.1 2.9E-05 9.8E-10 76.5 -3.3 60 114-176 88-147 (440)
109 1xku_A Decorin; proteoglycan, 97.1 6.7E-05 2.3E-09 70.7 -0.7 146 114-274 100-269 (330)
110 4eco_A Uncharacterized protein 97.0 0.00014 4.7E-09 75.6 0.7 131 114-256 249-390 (636)
111 2z62_A TOLL-like receptor 4, v 96.9 8.5E-05 2.9E-09 68.1 -1.4 16 234-255 221-236 (276)
112 2xwt_C Thyrotropin receptor; s 96.9 2.9E-05 9.8E-10 69.9 -4.7 129 114-255 80-217 (239)
113 2xot_A Amphoterin-induced prot 96.9 4.2E-05 1.4E-09 73.7 -4.0 59 114-175 64-122 (361)
114 1ogq_A PGIP-2, polygalacturona 96.9 1.9E-05 6.4E-10 74.6 -6.4 86 114-204 76-162 (313)
115 2v70_A SLIT-2, SLIT homolog 2 96.9 8.6E-05 2.9E-09 66.6 -1.8 131 114-255 32-165 (220)
116 1p9a_G Platelet glycoprotein I 96.8 9.4E-05 3.2E-09 69.2 -1.8 99 114-220 31-130 (290)
117 3rw6_A Nuclear RNA export fact 96.8 0.0013 4.5E-08 61.8 5.3 82 114-198 170-258 (267)
118 2ft3_A Biglycan; proteoglycan, 96.7 0.00027 9.4E-09 66.6 -0.2 123 114-255 78-205 (332)
119 2ft3_A Biglycan; proteoglycan, 96.6 0.00018 6.1E-09 67.9 -1.7 15 234-254 261-275 (332)
120 3g06_A SSPH2 (leucine-rich rep 96.6 0.00097 3.3E-08 69.6 3.6 76 164-256 220-297 (622)
121 2o6s_A Variable lymphocyte rec 96.6 0.00019 6.3E-09 63.1 -1.6 123 114-255 52-177 (208)
122 4g8a_A TOLL-like receptor 4; l 96.6 0.00067 2.3E-08 68.3 2.0 120 111-235 72-199 (635)
123 2v9t_B SLIT homolog 2 protein 96.4 0.00017 5.9E-09 64.6 -2.9 130 114-255 32-164 (220)
124 3j0a_A TOLL-like receptor 5; m 96.3 0.00065 2.2E-08 72.7 0.2 86 114-204 290-375 (844)
125 1ogq_A PGIP-2, polygalacturona 96.2 0.00012 4.1E-09 69.0 -5.7 128 114-255 125-256 (313)
126 3g06_A SSPH2 (leucine-rich rep 96.1 0.0054 1.8E-07 64.0 5.9 53 190-256 220-274 (622)
127 3cvr_A Invasion plasmid antige 96.1 0.0036 1.2E-07 64.8 4.3 12 164-175 139-150 (571)
128 2xot_A Amphoterin-induced prot 96.0 0.00048 1.6E-08 66.2 -2.6 58 116-175 41-98 (361)
129 1dce_A Protein (RAB geranylger 95.9 0.0019 6.6E-08 66.5 1.4 101 111-219 459-565 (567)
130 2v70_A SLIT-2, SLIT homolog 2 95.9 0.0016 5.4E-08 58.2 0.5 102 114-220 57-159 (220)
131 3rw6_A Nuclear RNA export fact 95.9 0.0022 7.5E-08 60.3 1.5 90 132-241 163-255 (267)
132 4b8c_D Glucose-repressible alc 95.8 0.0012 4.1E-08 69.9 -0.7 103 114-225 224-329 (727)
133 3cvr_A Invasion plasmid antige 95.7 0.0017 5.9E-08 67.1 0.0 115 115-257 121-244 (571)
134 2wfh_A SLIT homolog 2 protein 95.7 0.0013 4.3E-08 57.8 -0.9 85 114-204 31-115 (193)
135 1jl5_A Outer protein YOPM; leu 95.6 0.0087 3E-07 59.5 4.8 10 115-124 92-101 (454)
136 2v9t_B SLIT homolog 2 protein 95.6 0.0013 4.6E-08 58.7 -1.3 102 114-220 56-158 (220)
137 3e6j_A Variable lymphocyte rec 95.4 0.0022 7.7E-08 57.5 -0.3 125 115-255 20-147 (229)
138 2o6r_A Variable lymphocyte rec 95.4 0.0016 5.5E-08 55.6 -1.4 85 114-203 28-112 (177)
139 1jl5_A Outer protein YOPM; leu 95.3 0.018 6.2E-07 57.2 5.8 54 114-176 215-268 (454)
140 1w8a_A SLIT protein; signaling 95.3 0.00089 3E-08 58.5 -3.5 87 115-205 30-116 (192)
141 2o6r_A Variable lymphocyte rec 95.2 0.0018 6.1E-08 55.3 -1.6 126 115-255 8-136 (177)
142 3sb4_A Hypothetical leucine ri 95.2 0.01 3.5E-07 55.8 3.4 11 114-124 124-134 (329)
143 4b8c_D Glucose-repressible alc 95.1 0.0037 1.3E-07 66.2 -0.1 84 114-205 247-330 (727)
144 3sb4_A Hypothetical leucine ri 94.7 0.0046 1.6E-07 58.3 -0.6 27 222-254 211-237 (329)
145 1w8a_A SLIT protein; signaling 93.7 0.0041 1.4E-07 54.2 -2.9 86 114-204 54-139 (192)
146 3g39_A Variable lymphocyte rec 93.5 0.0097 3.3E-07 50.9 -0.8 59 114-175 30-88 (170)
147 2wfh_A SLIT homolog 2 protein 93.0 0.012 4E-07 51.5 -1.1 88 111-203 50-138 (193)
148 2r9u_A Variable lymphocyte rec 92.5 0.022 7.5E-07 49.0 -0.0 84 114-202 33-116 (174)
149 4ay9_X Follicle-stimulating ho 90.4 0.0034 1.1E-07 59.8 -8.3 15 234-254 199-213 (350)
150 4ay9_X Follicle-stimulating ho 89.6 0.0047 1.6E-07 58.8 -8.1 86 114-202 30-115 (350)
151 2r9u_A Variable lymphocyte rec 86.4 0.13 4.3E-06 44.1 -0.2 62 114-178 57-118 (174)
152 2ifg_A High affinity nerve gro 86.4 0.074 2.5E-06 49.9 -1.8 85 114-204 31-116 (347)
153 3g39_A Variable lymphocyte rec 86.2 0.098 3.3E-06 44.5 -1.0 61 114-177 54-114 (170)
154 4fdw_A Leucine rich hypothetic 77.0 0.29 9.8E-06 47.9 -1.7 30 114-147 203-234 (401)
155 2ifg_A High affinity nerve gro 73.3 0.52 1.8E-05 44.0 -0.9 80 118-203 12-92 (347)
156 4fdw_A Leucine rich hypothetic 72.6 0.46 1.6E-05 46.4 -1.5 75 114-199 157-234 (401)
157 4gt6_A Cell surface protein; l 59.9 2.6 9E-05 40.2 1.1 114 114-241 265-382 (394)
158 4fs7_A Uncharacterized protein 53.0 2.2 7.6E-05 40.7 -0.8 114 114-241 276-392 (394)
159 4h09_A Hypothetical leucine ri 37.4 7.9 0.00027 36.3 0.4 95 114-220 217-316 (379)
160 4gt6_A Cell surface protein; l 36.5 14 0.00049 34.9 2.0 93 114-220 288-384 (394)
161 4h09_A Hypothetical leucine ri 32.6 6.2 0.00021 37.0 -1.2 97 114-222 240-341 (379)
162 4fs7_A Uncharacterized protein 32.5 5.6 0.00019 37.8 -1.6 95 136-241 273-370 (394)
No 1
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.73 E-value=2.8e-18 Score=153.39 Aligned_cols=106 Identities=10% Similarity=0.141 Sum_probs=94.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhC---CCCCceEEccCCCCCcHHHHHHHHhhC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLH---CHSLETLRCGGSPRSNHAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~---Cp~L~~L~L~gC~~ItD~~l~~L~~~c 190 (358)
..|++|||++|.|||.|+..+ ..|++|++|+|++|.+|||.|+..|+.. |++|++|+|++|.+|||.|+.+|+ .|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 469999999999999999998 5899999999999999999999999974 789999999999999999999998 58
Q ss_pred CCCcEEeCCCccccchhhhhcccccccccccccCCHHH--HHHHHhcCCCcee
Q 018291 191 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS--IEMMSTECPRIIV 241 (358)
Q Consensus 191 p~L~~L~ls~~~~~d~~~i~~~~~sL~~L~C~~ITd~~--l~~L~~~Cp~L~~ 241 (358)
|+|++|++++ |++|||.+ +..+...-|++++
T Consensus 139 ~~L~~L~L~~--------------------c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSD--------------------LPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEES--------------------CTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCC--------------------CCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999865 78888866 4566667777765
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.1e-15 Score=144.97 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=134.0
Q ss_pred CCCHHHHHHhhc-cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCC-CCceEEccCCC-C
Q 018291 102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCH-SLETLRCGGSP-R 177 (358)
Q Consensus 102 ~ltD~~L~~l~~-~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp-~L~~L~L~gC~-~ 177 (358)
.+++.....+.. ++|++|+|++| .++|.++..+...|++|++|+|++|..+++.++..+...|+ +|++|++++|. .
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 478888888877 99999999999 99999999988999999999999998899999999899999 99999999998 7
Q ss_pred CcHHHHHHHHhhCCCCcEEeCCCcc-ccchhhh-hcccccccccc---cccCCHHHHHHHHhcCCCceecCCCCceeecC
Q 018291 178 SNHAARRCLGILKPKLNDVEGDSWE-ELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRG 252 (358)
Q Consensus 178 ItD~~l~~L~~~cp~L~~L~ls~~~-~~d~~~i-~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~g 252 (358)
++|.++..+...||+|+.|+++++. +++.+.. -..+++|+.|+ |..+++.++..+. .||+|+. +++.|
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~------L~l~~ 281 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKT------LQVFG 281 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCE------EECTT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCE------EeccC
Confidence 9999998888899999999999998 5554432 23458888887 7789999886664 5999999 99999
Q ss_pred CCCCcccccccc
Q 018291 253 FEVPREAFPDIT 264 (358)
Q Consensus 253 C~~s~eal~~~~ 264 (358)
| ++.+++..+.
T Consensus 282 ~-i~~~~~~~l~ 292 (336)
T 2ast_B 282 I-VPDGTLQLLK 292 (336)
T ss_dssp S-SCTTCHHHHH
T ss_pred c-cCHHHHHHHH
Confidence 9 8777766554
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=3.8e-15 Score=151.55 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=129.3
Q ss_pred CCCCHHHHHHhhc--cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecC---CCCCCH----HHHHHHHhCCCCCceEE
Q 018291 101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISC---CDRITA----AGVSEFLLHCHSLETLR 171 (358)
Q Consensus 101 ~~ltD~~L~~l~~--~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~---C~~ITD----~gl~~La~~Cp~L~~L~ 171 (358)
..+++.++..+.. ++|+.|+|+.+.+++.++..++..|++|++|+|++ |..+|+ .|+..+..+|++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 3677777777655 78888888555888888888888888888888873 667875 58888888888888888
Q ss_pred ccCCCC-CcHHHHHHHHhhCCCCcEEeCCCccccchhh--hhcccccccccc---cccCCHHHHHHHHhcCCCceecCCC
Q 018291 172 CGGSPR-SNHAARRCLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKP 245 (358)
Q Consensus 172 L~gC~~-ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~--i~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~ 245 (358)
+++|.+ ++|.++..++..||+|+.|+++++.+++.+. +..++++|+.|+ |+ ||+.++..+...||+|+.
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~---- 517 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY---- 517 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE----
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe----
Confidence 887764 7888888888889999999998888777654 346778888887 66 899999999889999999
Q ss_pred CceeecCCCCCccccccccCCCcc
Q 018291 246 SPFGFRGFEVPREAFPDITLDDPF 269 (358)
Q Consensus 246 ~~l~l~gC~~s~eal~~~~l~~~~ 269 (358)
+++.+|.++..++..+....|.
T Consensus 518 --L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 518 --LWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp --EEEESCBCCTTCTTGGGGCCTT
T ss_pred --eECcCCcCCHHHHHHHHHhCCC
Confidence 9999999888877776655443
No 4
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.60 E-value=7.2e-16 Score=137.73 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=84.8
Q ss_pred CCCHHHHHHhhc-cCccEEEeeCC-CCChHHHHHHHH---hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 102 LLADDVIMSLAD-SSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 102 ~ltD~~L~~l~~-~~L~~L~Ls~c-~ItD~gL~~la~---~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
.|||.++..+.. ++|++|+|++| .|||.|+..|+. .|++|++|||++|.+|||.|+..|+ +|++|++|++++|+
T Consensus 72 ~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 72 CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCT
T ss_pred CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCC
Confidence 499999999977 99999999999 899999999997 3889999999999999999999997 59999999999999
Q ss_pred CCcHHH--HHHHHhhCCCCcE
Q 018291 177 RSNHAA--RRCLGILKPKLND 195 (358)
Q Consensus 177 ~ItD~~--l~~L~~~cp~L~~ 195 (358)
.|||.+ ...+-...|+++.
T Consensus 151 ~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 151 GVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCchHHHHHHHHHHCCCcEE
Confidence 999987 4556778998875
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=6.9e-15 Score=139.43 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCC-C
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP-K 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp-~ 192 (358)
++|++|+|++|.+++.+...++. |++|++|+|++|..+++.++..+..+|++|++|++++|..+++.++..+...+| +
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 44555555555555444444432 455555555554445554444444445555555555554444444444444444 5
Q ss_pred CcEEeCCCc
Q 018291 193 LNDVEGDSW 201 (358)
Q Consensus 193 L~~L~ls~~ 201 (358)
|+.|+++++
T Consensus 197 L~~L~l~~~ 205 (336)
T 2ast_B 197 ITQLNLSGY 205 (336)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeCCC
Confidence 555555444
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=4.6e-15 Score=150.93 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=130.5
Q ss_pred CCHHHHHHhhc--cCccEEEeeC----------C-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCce
Q 018291 103 LADDVIMSLAD--SSWEILDISG----------S-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLET 169 (358)
Q Consensus 103 ltD~~L~~l~~--~~L~~L~Ls~----------c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~ 169 (358)
++|.++..+.. ++|++|+|++ | .+++.++..++..|++|++|+| +|.++|+.++..++.+|++|++
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcE
Confidence 46667766655 7788888884 7 7888888888888888888888 5677888888888887888888
Q ss_pred EEccC---CCCCcH----HHHHHHHhhCCCCcEEeCCCcc--ccchhh--hhcccccccccc--cccCCHHHHHHHHhcC
Q 018291 170 LRCGG---SPRSNH----AARRCLGILKPKLNDVEGDSWE--ELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTEC 236 (358)
Q Consensus 170 L~L~g---C~~ItD----~~l~~L~~~cp~L~~L~ls~~~--~~d~~~--i~~~~~sL~~L~--C~~ITd~~l~~L~~~C 236 (358)
|++++ |..+++ .++..+...|++|+.|+++.+. +++.+. ++..+++|++|+ +.++|+.++..+..+|
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 487 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence 88874 556765 5777777778888888886543 455443 456678888887 6679999999999999
Q ss_pred CCceecCCCCceeecCCCCCccccccccCCCcccccccccccccc
Q 018291 237 PRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVP 281 (358)
Q Consensus 237 p~L~~~p~~~~l~l~gC~~s~eal~~~~l~~~~~~~~~~~~W~v~ 281 (358)
++|+. |++.+|+++.++++.+....+.++.++.....+.
T Consensus 488 ~~L~~------L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 488 PNLQK------LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TTCCE------EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred cccCe------eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 99999 9999999877777776666666776665544443
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=7.5e-15 Score=149.23 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEcc-----CCCCCc----HHHHHHHHhhCCCCcE
Q 018291 125 DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCG-----GSPRSN----HAARRCLGILKPKLND 195 (358)
Q Consensus 125 ~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~-----gC~~It----D~~l~~L~~~cp~L~~ 195 (358)
.++|.++..++..|++|+.|++ +|.++|+.++..++.+||+|++|+++ +|..++ |.++..+...|++|+.
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 4455555444444444444422 23445555555554445555555555 444555 4455555445555555
Q ss_pred EeCCCccccchhh--hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCccccc
Q 018291 196 VEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFP 261 (358)
Q Consensus 196 L~ls~~~~~d~~~--i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~eal~ 261 (358)
|++++ .+++.+. ++..+++|+.|+ +..+|+.++..++.+||+|+. |++.+|+++.+++.
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~------L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK------LEIRDCPFGDKALL 499 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE------EEEESCSCCHHHHH
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE------EECcCCCCcHHHHH
Confidence 55544 3333322 222344455444 333555555555555555555 55555554444333
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=4.8e-15 Score=150.67 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=137.6
Q ss_pred CCCCHHHHHHhhc--cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeec-----CCCCCC----HHHHHHHHhCCCCCce
Q 018291 101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDIS-----CCDRIT----AAGVSEFLLHCHSLET 169 (358)
Q Consensus 101 ~~ltD~~L~~l~~--~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs-----~C~~IT----D~gl~~La~~Cp~L~~ 169 (358)
..+++.++..+.. ++|+.|+++++.+++.++..++..|++|++|+|+ +|.++| |.|+..++.+|++|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 4688999888875 8999997766699999999999999999999999 799999 9999999999999999
Q ss_pred EEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhh--hcccccccccc---cccCCHHHHHHHHhcCCCceecCC
Q 018291 170 LRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDI--GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPK 244 (358)
Q Consensus 170 L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i--~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~ 244 (358)
|++++ .++|.++..++..+++|+.|+++++.+++.+.. ..++++|+.|+ |+ +|+.++..++..||+|+.
T Consensus 437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~--- 510 (594)
T 2p1m_B 437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRS--- 510 (594)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSE---
T ss_pred EeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCE---
Confidence 99977 899999999999999999999999988887753 46689999998 55 599999999999999999
Q ss_pred CCceeecCCCCCcccccccc
Q 018291 245 PSPFGFRGFEVPREAFPDIT 264 (358)
Q Consensus 245 ~~~l~l~gC~~s~eal~~~~ 264 (358)
+++.+|+++.+++..+.
T Consensus 511 ---L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 511 ---LWMSSCSVSFGACKLLG 527 (594)
T ss_dssp ---EEEESSCCBHHHHHHHH
T ss_pred ---EeeeCCCCCHHHHHHHH
Confidence 99999998777766553
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=127.39 Aligned_cols=154 Identities=8% Similarity=0.030 Sum_probs=126.1
Q ss_pred CCCHHHHHHhhc------cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHh----CCCCCceEE
Q 018291 102 LLADDVIMSLAD------SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL----HCHSLETLR 171 (358)
Q Consensus 102 ~ltD~~L~~l~~------~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~----~Cp~L~~L~ 171 (358)
.+++.....|+. ++|+.|+|++|.|+|.|+..++..+++|++|+|++| .+++.|+..++. .+++|++|+
T Consensus 83 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~ 161 (372)
T 3un9_A 83 RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLR 161 (372)
T ss_dssp CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEE
T ss_pred CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceee
Confidence 477765555432 589999999999999999999999999999999998 699999988874 478999999
Q ss_pred ccCCCCCcHHHHHHHH---hhCCCCcEEeCCCccccchhhh--h---cccccccccc--cccCCHHHHHHHHh---cCCC
Q 018291 172 CGGSPRSNHAARRCLG---ILKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMMST---ECPR 238 (358)
Q Consensus 172 L~gC~~ItD~~l~~L~---~~cp~L~~L~ls~~~~~d~~~i--~---~~~~sL~~L~--C~~ITd~~l~~L~~---~Cp~ 238 (358)
|++| .+++.++..++ ..++.|++|+++++.+.+.++. + ...++|+.|+ ...|++.+...++. .++.
T Consensus 162 Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~ 240 (372)
T 3un9_A 162 LSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240 (372)
T ss_dssp CCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS
T ss_pred CCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999 58998888876 4688999999999998887642 2 3345788887 66899999887764 6899
Q ss_pred ceecCCCCceeecCCCCCccccccc
Q 018291 239 IIVNPKPSPFGFRGFEVPREAFPDI 263 (358)
Q Consensus 239 L~~~p~~~~l~l~gC~~s~eal~~~ 263 (358)
|+. +++.+|+++..+...+
T Consensus 241 L~~------L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 241 LEL------LHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCE------EECTTSSCCHHHHHHH
T ss_pred CCE------EeccCCCCCHHHHHHH
Confidence 999 9999999776665433
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=3.4e-11 Score=116.97 Aligned_cols=138 Identities=14% Similarity=0.217 Sum_probs=104.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHH---hCCCCCEEeecCCCCCCHHHHHHHHh----CCCCCceEEccCCCCCcHHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLL----HCHSLETLRCGGSPRSNHAARRCL 186 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~---~C~~L~~LdLs~C~~ITD~gl~~La~----~Cp~L~~L~L~gC~~ItD~~l~~L 186 (358)
++|++|+|++|.+++.++..++. .+++|++|+|++| ++++.|+..++. ++++|++|+|++|. +++.+...+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 68889999988888888875544 7888999999987 588888777766 78889999998875 777666655
Q ss_pred H---hhCCCCcEEeCCCccccchhhh--h-----cccccccccc--cccCCHHHHHHHH----hcCCCceecCCCCceee
Q 018291 187 G---ILKPKLNDVEGDSWEELVNTDI--G-----HGAQSLRWFV--WPNIDKDSIEMMS----TECPRIIVNPKPSPFGF 250 (358)
Q Consensus 187 ~---~~cp~L~~L~ls~~~~~d~~~i--~-----~~~~sL~~L~--C~~ITd~~l~~L~----~~Cp~L~~~p~~~~l~l 250 (358)
. ..+++|+.|+++++.+.+.+.. . ..+++|+.|+ ...|++.++..+. .+||+|+. +++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~------L~l 310 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF------LEL 310 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE------EEC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE------EEc
Confidence 4 4678888899888887776542 1 2267788877 5668887665554 55889998 899
Q ss_pred cCCCCCccc
Q 018291 251 RGFEVPREA 259 (358)
Q Consensus 251 ~gC~~s~ea 259 (358)
.+|+++...
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 888865443
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=124.35 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=124.9
Q ss_pred CCHHHHHHhhccCccEEEeeCCCCChHHHHHHHHh----CCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCC
Q 018291 103 LADDVIMSLADSSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 178 (358)
Q Consensus 103 ltD~~L~~l~~~~L~~L~Ls~c~ItD~gL~~la~~----C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~I 178 (358)
+.|..+..-..++|+.|+|++|.|++.+...++.. +++|++|||++| .+++.|+..++..+++|++|+|++| .+
T Consensus 61 ~~~~~l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l 138 (372)
T 3un9_A 61 FQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SL 138 (372)
T ss_dssp HHTHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CC
T ss_pred hcCHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CC
Confidence 44555555556899999999999999998887765 479999999998 5999999999999999999999998 68
Q ss_pred cHHHHHHHHh----hCCCCcEEeCCCccccchhhh--h---cccccccccc--cccCCHHHHHHHH---hcCCCceecCC
Q 018291 179 NHAARRCLGI----LKPKLNDVEGDSWEELVNTDI--G---HGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPK 244 (358)
Q Consensus 179 tD~~l~~L~~----~cp~L~~L~ls~~~~~d~~~i--~---~~~~sL~~L~--C~~ITd~~l~~L~---~~Cp~L~~~p~ 244 (358)
++.++..++. .++.|+.|+++++.+++.+.. + ..+++|+.|+ ...|+|.++..|+ ..++.|+.
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~--- 215 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE--- 215 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE---
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe---
Confidence 9999888864 468899999999998886642 2 4567899888 6679999987775 57889999
Q ss_pred CCceeecCCCCCcccc
Q 018291 245 PSPFGFRGFEVPREAF 260 (358)
Q Consensus 245 ~~~l~l~gC~~s~eal 260 (358)
|++.+|.++..+.
T Consensus 216 ---L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 216 ---LNVAYNGAGDTAA 228 (372)
T ss_dssp ---EECCSSCCCHHHH
T ss_pred ---EECCCCCCCHHHH
Confidence 9999999876543
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=1.9e-11 Score=118.66 Aligned_cols=150 Identities=11% Similarity=0.016 Sum_probs=118.4
Q ss_pred CCCHHHHH----Hhhc-cCccEEEeeCCCCChHHHHHHHHhC------------CCCCEEeecCCCCCCHHHHHHHHh--
Q 018291 102 LLADDVIM----SLAD-SSWEILDISGSDVSDFGLVKVAQMC------------KSLKAVDISCCDRITAAGVSEFLL-- 162 (358)
Q Consensus 102 ~ltD~~L~----~l~~-~~L~~L~Ls~c~ItD~gL~~la~~C------------~~L~~LdLs~C~~ITD~gl~~La~-- 162 (358)
.+++.++. .+.. ++|++|+|++|.+++.+...++..+ ++|++|+|++| ++++.++..++.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTF 183 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHH
Confidence 45664333 3334 8999999999999998887766543 99999999997 599888886554
Q ss_pred -CCCCCceEEccCCCCCcHHHHHHHHh----hCCCCcEEeCCCccccchhh--h---hcccccccccc--cccCCHHHHH
Q 018291 163 -HCHSLETLRCGGSPRSNHAARRCLGI----LKPKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIE 230 (358)
Q Consensus 163 -~Cp~L~~L~L~gC~~ItD~~l~~L~~----~cp~L~~L~ls~~~~~d~~~--i---~~~~~sL~~L~--C~~ITd~~l~ 230 (358)
.+++|++|++++| .+++.++..+.. .+++|+.|+++++.+++.+. + -..+++|+.|+ ...|++.+..
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 7999999999998 688888777655 78999999999998877653 2 24567888887 5569999888
Q ss_pred HHHhc-----CCCceecCCCCceeecCCCCCccc
Q 018291 231 MMSTE-----CPRIIVNPKPSPFGFRGFEVPREA 259 (358)
Q Consensus 231 ~L~~~-----Cp~L~~~p~~~~l~l~gC~~s~ea 259 (358)
.+... +++|+. |++.+|.++..+
T Consensus 263 ~l~~~l~~~~~~~L~~------L~L~~n~i~~~g 290 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQT------LRLQYNEIELDA 290 (386)
T ss_dssp HHHHHHHTCSSCCCCE------EECCSSCCBHHH
T ss_pred HHHHHHhhccCCCeEE------EECcCCcCCHHH
Confidence 77653 899999 999999987653
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.20 E-value=6.1e-11 Score=116.77 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=71.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHH----hCCCCCEEeecCCCCCCHHHHHHHHh---CCCCCceEEccCCCCCcHHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCL 186 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~----~C~~L~~LdLs~C~~ITD~gl~~La~---~Cp~L~~L~L~gC~~ItD~~l~~L 186 (358)
++|++|+|++|.++|.|+..++. .+++|++|+|++| .+++.|+..++. .|++|++|+++++ .+++.+...+
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 304 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLL 304 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHH
Confidence 55555555555555555544443 2555555555555 455555433332 3555666666555 3555555444
Q ss_pred Hhh----CCCCcEEeCCCccccchhh--h---hcccccccccc--cccCCHHHHHHHHhc----CCCceecCCCCceeec
Q 018291 187 GIL----KPKLNDVEGDSWEELVNTD--I---GHGAQSLRWFV--WPNIDKDSIEMMSTE----CPRIIVNPKPSPFGFR 251 (358)
Q Consensus 187 ~~~----cp~L~~L~ls~~~~~d~~~--i---~~~~~sL~~L~--C~~ITd~~l~~L~~~----Cp~L~~~p~~~~l~l~ 251 (358)
+.. .++|+.|+++++.+++.+. + -..+++|+.|+ ...|++.++..+... +++|+. +++.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~------L~L~ 378 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV------LWLA 378 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE------EECT
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE------EECC
Confidence 432 2355555555555444432 1 12235566555 335666666655542 566666 6666
Q ss_pred CCCCCc
Q 018291 252 GFEVPR 257 (358)
Q Consensus 252 gC~~s~ 257 (358)
+|.++.
T Consensus 379 ~n~i~~ 384 (461)
T 1z7x_W 379 DCDVSD 384 (461)
T ss_dssp TSCCCH
T ss_pred CCCCCh
Confidence 666554
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=3.5e-10 Score=111.28 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=118.1
Q ss_pred CCCCHHHHHHhhc--cCccEEEeeCCCCChHHHHHHH---HhCCCCCEEeecCCCCCCHHHHHHHHhCCC----CCceEE
Q 018291 101 KLLADDVIMSLAD--SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHCH----SLETLR 171 (358)
Q Consensus 101 ~~ltD~~L~~l~~--~~L~~L~Ls~c~ItD~gL~~la---~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp----~L~~L~ 171 (358)
..+++..+..+.. ++|+.|+|++|.+++.++..+. ..+++|++|+|+++ .+++.++..++..++ +|++|+
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEE
Confidence 3577877776444 8999999999999998765554 45899999999996 599999999998887 799999
Q ss_pred ccCCCCCcHHHHHHHH---hhCCCCcEEeCCCccccchhh--hhc----ccccccccc--cccCCHHHHHHH---HhcCC
Q 018291 172 CGGSPRSNHAARRCLG---ILKPKLNDVEGDSWEELVNTD--IGH----GAQSLRWFV--WPNIDKDSIEMM---STECP 237 (358)
Q Consensus 172 L~gC~~ItD~~l~~L~---~~cp~L~~L~ls~~~~~d~~~--i~~----~~~sL~~L~--C~~ITd~~l~~L---~~~Cp 237 (358)
+++|. +++.++..+. ..+++|+.|+++++.+.+.+. ++. ...+|+.|+ ...|++.+...+ ...|+
T Consensus 92 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 92 LQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp CTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred ccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence 99984 7776544443 568899999999988776654 222 234688887 457888765544 45699
Q ss_pred CceecCCCCceeecCCCCCccccccc
Q 018291 238 RIIVNPKPSPFGFRGFEVPREAFPDI 263 (358)
Q Consensus 238 ~L~~~p~~~~l~l~gC~~s~eal~~~ 263 (358)
+|+. +++.+|.++..++..+
T Consensus 171 ~L~~------L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 171 DFKE------LTVSNNDINEAGVRVL 190 (461)
T ss_dssp TCCE------EECCSSBCHHHHHHHH
T ss_pred CCCE------EECcCCCcchHHHHHH
Confidence 9999 9999999766554443
No 15
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.11 E-value=1.7e-09 Score=95.77 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=75.5
Q ss_pred cCccEEEeeCC-CCChHHHHHHHH---hCCCCCEEeecCCCCCCHHHHHHHHh---CCCCCceEEccCCCCCcHHHHHHH
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCL 186 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~---~C~~L~~LdLs~C~~ITD~gl~~La~---~Cp~L~~L~L~gC~~ItD~~l~~L 186 (358)
+.|++|+|++| .|+|.|+..++. .+++|++|+|++| .|+|.|...|+. .++.|++|+|++| .++|.+..+|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l 113 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL 113 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHH
Confidence 88999999999 999999988875 4789999999997 499999887765 4688999999987 5899998888
Q ss_pred Hh---hCCCCcEEeC--CCccccchh
Q 018291 187 GI---LKPKLNDVEG--DSWEELVNT 207 (358)
Q Consensus 187 ~~---~cp~L~~L~l--s~~~~~d~~ 207 (358)
+. .++.|+.|++ ++..+.+.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHH
Confidence 74 4567888888 555555544
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.97 E-value=4.4e-09 Score=92.98 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=88.9
Q ss_pred CCCHHHHHHhhc-----cCccEEEeeCCCCChHHHHHHHH---hCCCCCEEeecCCCCCCHHHHHHHHh---CCCCCceE
Q 018291 102 LLADDVIMSLAD-----SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETL 170 (358)
Q Consensus 102 ~ltD~~L~~l~~-----~~L~~L~Ls~c~ItD~gL~~la~---~C~~L~~LdLs~C~~ITD~gl~~La~---~Cp~L~~L 170 (358)
.++|+++..|+. ++|++|+|++|.|+|.|...++. .++.|++|+|++| .|+|.|+..|+. .++.|++|
T Consensus 48 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L 126 (185)
T 1io0_A 48 NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIEL 126 (185)
T ss_dssp TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEE
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEE
Confidence 688888777764 78999999999999999987765 4689999999997 699999988885 46789999
Q ss_pred Ec--cCCCCCcHHHHHHHHh---hCCCCcEEeCCCccccchhhhh
Q 018291 171 RC--GGSPRSNHAARRCLGI---LKPKLNDVEGDSWEELVNTDIG 210 (358)
Q Consensus 171 ~L--~gC~~ItD~~l~~L~~---~cp~L~~L~ls~~~~~d~~~i~ 210 (358)
+| +++ .+++.+..+|+. .++.|+.|+++++.+.+.+.++
T Consensus 127 ~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~ 170 (185)
T 1io0_A 127 RIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRAS 170 (185)
T ss_dssp ECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHH
T ss_pred EecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHH
Confidence 99 544 699999877764 4689999999988877766543
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.91 E-value=7.8e-10 Score=106.83 Aligned_cols=159 Identities=8% Similarity=0.031 Sum_probs=99.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHh----CCCCCEEeecCCCCCCHHHHHHHHh---CCC-CCceEEccCCCCCcHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDISCCDRITAAGVSEFLL---HCH-SLETLRCGGSPRSNHAARRC 185 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~----C~~L~~LdLs~C~~ITD~gl~~La~---~Cp-~L~~L~L~gC~~ItD~~l~~ 185 (358)
++|+.|+|++|.+++.+...++.. +++|++|+|++| .+++.|+..++. .++ +|++|++++|. +++.+...
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 186 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAE 186 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHH
Confidence 578888888887777777666544 568888888886 577766665543 344 78888888873 44444333
Q ss_pred HH---hhC-CCCcEEeCCCccccchhhh------hcccccccccc--cccCCHHHH---HHHHhcCCCceecCCCCceee
Q 018291 186 LG---ILK-PKLNDVEGDSWEELVNTDI------GHGAQSLRWFV--WPNIDKDSI---EMMSTECPRIIVNPKPSPFGF 250 (358)
Q Consensus 186 L~---~~c-p~L~~L~ls~~~~~d~~~i------~~~~~sL~~L~--C~~ITd~~l---~~L~~~Cp~L~~~p~~~~l~l 250 (358)
++ ..+ ++|+.|+++++.+.+.+.. ....++|+.|+ ...|++.+. ..+...+++|+. +++
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~------L~L 260 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT------VYL 260 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE------EEE
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE------EEe
Confidence 32 234 4888888888877764431 22245777777 456776444 444466788888 888
Q ss_pred cCCC---CCccccccccC---CCccccccccccccc
Q 018291 251 RGFE---VPREAFPDITL---DDPFVNDIDPSAWAV 280 (358)
Q Consensus 251 ~gC~---~s~eal~~~~l---~~~~~~~~~~~~W~v 280 (358)
.+|. ++.+++..+.. ..+.++.++...+.+
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 8887 55554444332 223344444444443
No 18
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.85 E-value=1.8e-09 Score=104.25 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=107.6
Q ss_pred cCccEEEeeCCCCChHHHHHHHH---hC-CCCCEEeecCCCCCCHHHHHHHHhC----CCCCceEEccCCCCCcHHHHHH
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQ---MC-KSLKAVDISCCDRITAAGVSEFLLH----CHSLETLRCGGSPRSNHAARRC 185 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~---~C-~~L~~LdLs~C~~ITD~gl~~La~~----Cp~L~~L~L~gC~~ItD~~l~~ 185 (358)
++|++|+|++|.+++.+...++. .+ ++|++|+|++|. +++.+...++.. +++|++|++++| .+++.+...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHH
Confidence 78999999999888766655443 34 799999999975 888887776643 679999999988 466655554
Q ss_pred HHh---hCC-CCcEEeCCCccccchhh--hh---ccc-ccccccc--cccCCHHHHHHHH----hcCCCceecCCCCcee
Q 018291 186 LGI---LKP-KLNDVEGDSWEELVNTD--IG---HGA-QSLRWFV--WPNIDKDSIEMMS----TECPRIIVNPKPSPFG 249 (358)
Q Consensus 186 L~~---~cp-~L~~L~ls~~~~~d~~~--i~---~~~-~sL~~L~--C~~ITd~~l~~L~----~~Cp~L~~~p~~~~l~ 249 (358)
++. ..+ +|+.|+++++.+.+.+. ++ ..+ ++|+.|+ ...|++.++..+. ..+++|+. ++
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~------L~ 231 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS------LN 231 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE------EE
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE------EE
Confidence 432 244 89999999988876553 21 223 5888887 5568886665443 34679999 99
Q ss_pred ecCCCCCcccc---ccccCCCcccccccc
Q 018291 250 FRGFEVPREAF---PDITLDDPFVNDIDP 275 (358)
Q Consensus 250 l~gC~~s~eal---~~~~l~~~~~~~~~~ 275 (358)
+.+|.++..+. ..+....+.++.++.
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 99999766544 333333344555433
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.6e-09 Score=104.86 Aligned_cols=139 Identities=13% Similarity=0.018 Sum_probs=103.3
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHh-CCCCCceEEccCCCC--CcHHHHHHHH--
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL-HCHSLETLRCGGSPR--SNHAARRCLG-- 187 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~-~Cp~L~~L~L~gC~~--ItD~~l~~L~-- 187 (358)
|+|+.|+|+|| +++-.. + ..++|++|+|..| .+++.++..++. .+|+|++|+|+.+.. .++.++..|+
T Consensus 172 P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred CCCcEEEEeCCCCceecc---c--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 89999999998 554322 2 3789999999976 599999999985 589999999864321 1222222221
Q ss_pred ---hhCCCCcEEeCCCccccchhh--h--hcccccccccc--cccCCHHHHHHHH---hcCCCceecCCCCceeecCCCC
Q 018291 188 ---ILKPKLNDVEGDSWEELVNTD--I--GHGAQSLRWFV--WPNIDKDSIEMMS---TECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 188 ---~~cp~L~~L~ls~~~~~d~~~--i--~~~~~sL~~L~--C~~ITd~~l~~L~---~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
..+|+|+.|++..+.+.+.+. + +..+++|+.|+ +..|+|.|..++. .++|+|+. |++.+|.+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~------L~L~~n~i 319 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF------INMKYNYL 319 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE------EECCSBBC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE------EECCCCcC
Confidence 358999999998888887653 2 23578899888 7889999998887 45899999 99999998
Q ss_pred Ccccccccc
Q 018291 256 PREAFPDIT 264 (358)
Q Consensus 256 s~eal~~~~ 264 (358)
+.+++..+.
T Consensus 320 ~d~~~~~l~ 328 (362)
T 2ra8_A 320 SDEMKKELQ 328 (362)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 877654433
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=3.7e-08 Score=96.61 Aligned_cols=124 Identities=7% Similarity=0.038 Sum_probs=94.9
Q ss_pred hccCccEEEeeCCCCChHHHHHHHH-hCCCCCEEeecCCCC--CCHHHH---HHHH--hCCCCCceEEccCCCCCcHHHH
Q 018291 112 ADSSWEILDISGSDVSDFGLVKVAQ-MCKSLKAVDISCCDR--ITAAGV---SEFL--LHCHSLETLRCGGSPRSNHAAR 183 (358)
Q Consensus 112 ~~~~L~~L~Ls~c~ItD~gL~~la~-~C~~L~~LdLs~C~~--ITD~gl---~~La--~~Cp~L~~L~L~gC~~ItD~~l 183 (358)
..++|++|+|..|.+++.++..++. .+|+|++|+|+.+.+ ..+.++ ..+. ..+|+|++|+|.+|. ++|.+.
T Consensus 191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~ 269 (362)
T 2ra8_A 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVV 269 (362)
T ss_dssp BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHH
T ss_pred cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHH
Confidence 3589999999999999999999985 699999999975422 223233 2222 358999999999885 677777
Q ss_pred HHHHh--hCCCCcEEeCCCccccchhh--hh---cccccccccc--cccCCHHHHHHHHhcC
Q 018291 184 RCLGI--LKPKLNDVEGDSWEELVNTD--IG---HGAQSLRWFV--WPNIDKDSIEMMSTEC 236 (358)
Q Consensus 184 ~~L~~--~cp~L~~L~ls~~~~~d~~~--i~---~~~~sL~~L~--C~~ITd~~l~~L~~~C 236 (358)
.+++. .+|+|++|+++...+.|.|. +. ..+++|+.|+ ...|+|+++.+|...+
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 77764 67899999999888888764 32 3467888887 4579999999999754
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.61 E-value=3.4e-09 Score=90.90 Aligned_cols=130 Identities=10% Similarity=-0.018 Sum_probs=94.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.++|..+......+++|+.|+|++|. +++. .....+++|++|++++|.-.+ . +..+...+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFG-G-LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCS-C-CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCch-H-HHHHHhhCCCC
Confidence 7899999999988865565555678999999999985 7754 334578999999999986433 1 33445568999
Q ss_pred cEEeCCCccccchh--hhhcccccccccc--cccCCHHHH--HHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKDSI--EMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~--~i~~~~~sL~~L~--C~~ITd~~l--~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+++++.+.+.. ..-..+++|+.|+ ...+++... ......+|+|+. +++.+|..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~------L~l~~n~~ 159 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY------LDGYDRED 159 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE------ETTEETTS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE------ecCCCCCh
Confidence 99999998877643 2234567888887 233443221 245678999999 99999883
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.56 E-value=1.3e-08 Score=85.43 Aligned_cols=122 Identities=13% Similarity=0.034 Sum_probs=83.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|++++|.++|..+......+++|+.|+|++| .+++. .....+++|++|++++|.-.+ . +..+...+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~-~-~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSG-G-LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCS-C-THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccc-h-HHHHhhhCCCC
Confidence 789999999998886555555567899999999997 46654 334568999999999885433 1 33344568999
Q ss_pred cEEeCCCccccchh--hhhcccccccccc--cccCCHHHH--HHHHhcCCCcee
Q 018291 194 NDVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKDSI--EMMSTECPRIIV 241 (358)
Q Consensus 194 ~~L~ls~~~~~d~~--~i~~~~~sL~~L~--C~~ITd~~l--~~L~~~Cp~L~~ 241 (358)
+.|+++++.+.+.. ..-..+++|+.|+ ...+++..- ......+|+|+.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 99999888776643 2234566777776 223443321 235567788887
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.54 E-value=3.6e-08 Score=87.01 Aligned_cols=126 Identities=13% Similarity=0.023 Sum_probs=88.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+++++.|++-. . ...+++|++|+|++| .+++-. . ...+++|++|++++|. +++.....++ .+++|
T Consensus 44 ~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--G-IEYAHNIKDLTINNI-HATNYN--P-ISGLSNLERLRIMGKD-VTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESC-CCSCCG--G-GTTCTTCCEEEEECTT-CBGGGSCCCT-TCTTC
T ss_pred CCccEEeccCCCccChH--H-HhcCCCCCEEEccCC-CCCcch--h-hhcCCCCCEEEeECCc-cCcccChhhc-CCCCC
Confidence 78899999998776522 1 356889999999998 566542 2 3468899999999874 5543344444 47889
Q ss_pred cEEeCCCccccchhhh-hcccccccccc---cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCc
Q 018291 194 NDVEGDSWEELVNTDI-GHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 257 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i-~~~~~sL~~L~---C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~ 257 (358)
+.|+++++.+++...- -..+++|+.|+ |..+++-. ....+|+|+. +++.+|.++.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~------L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKS------LNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCE------EECTTBCCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCE------EECCCCCCcC
Confidence 9999988887764331 23567888877 44466642 3567899999 9999998543
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.50 E-value=7.7e-08 Score=84.85 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=96.0
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~ 189 (358)
+.. ++|+.|++++|.+++-. . ...+++|++|+|++| .+++.+...+. .+++|++|++++|. +++.....++ .
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~-i~~~~~~~l~-~ 134 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN--P-ISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSA-HDDSILTKIN-T 134 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG--G-GTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSB-CBGGGHHHHT-T
T ss_pred HhcCCCCCEEEccCCCCCcch--h-hhcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCc-cCcHhHHHHh-h
Confidence 444 89999999999776543 2 346899999999996 58876666654 68999999999984 6665566665 5
Q ss_pred CCCCcEEeCCCcc-ccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 190 KPKLNDVEGDSWE-ELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 190 cp~L~~L~ls~~~-~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+++|+.|+++++. +.+.. .-..+++|+.|+ ...|++-. ....+|+|+. +++.|.++.
T Consensus 135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~------L~l~~N~i~ 194 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ------LYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE------EEECBC---
T ss_pred CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCE------EEeeCcccC
Confidence 8999999999987 55543 234577888887 44566632 4568899999 999998753
No 25
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.30 E-value=4.8e-06 Score=75.27 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=31.6
Q ss_pred cCccEEEeeCC-CCChHHHHHHHHh---CCCCCEEeecCCCCCCHHHHHHHHh---CCCCCceEEccCCCCCcHHHHHHH
Q 018291 114 SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCL 186 (358)
Q Consensus 114 ~~L~~L~Ls~c-~ItD~gL~~la~~---C~~L~~LdLs~C~~ITD~gl~~La~---~Cp~L~~L~L~gC~~ItD~~l~~L 186 (358)
+.|++|+|+++ .|+|.|...|+.. -..|+.|+|++| +|+|.|..+|+. ..+.|++|+|+++ .|+|.|..+|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHH
Confidence 44444444443 4444444444432 224444444443 244444333332 2344444444433 3444444444
Q ss_pred H
Q 018291 187 G 187 (358)
Q Consensus 187 ~ 187 (358)
+
T Consensus 119 a 119 (197)
T 1pgv_A 119 L 119 (197)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.26 E-value=5.7e-07 Score=75.32 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=69.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHH-HHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA-ARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~-~l~~L~~~cp~ 192 (358)
++|+.|+|++|.+++. .....+++|+.|+|++|. +++. +..+...+++|++|++++|. +++- ....+ ..+++
T Consensus 42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~-~~l~~ 114 (149)
T 2je0_A 42 EELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL-KKLEN 114 (149)
T ss_dssp TTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGG-GGCTT
T ss_pred CCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHH-hhCCC
Confidence 7899999999877765 223468899999999874 6553 44455568999999999886 5543 22333 46889
Q ss_pred CcEEeCCCccccchhh----hhcccccccccc
Q 018291 193 LNDVEGDSWEELVNTD----IGHGAQSLRWFV 220 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~----i~~~~~sL~~L~ 220 (358)
|+.|+++++.+++... ....+++|+.|+
T Consensus 115 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 115 LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 9999998887665433 234556676664
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.22 E-value=1.3e-06 Score=82.74 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=40.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|++|+|++|.+++..- ...+++|+.|++++|..+++-.- ...+++|++|++++|...+... ...+++|
T Consensus 110 ~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L 179 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP----IANLTDL 179 (347)
T ss_dssp TTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG----GGGCTTC
T ss_pred CcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh----hccCCCC
Confidence 556666666664443221 23456666666666544443221 2345566666666554222111 2345666
Q ss_pred cEEeCCCccccc
Q 018291 194 NDVEGDSWEELV 205 (358)
Q Consensus 194 ~~L~ls~~~~~d 205 (358)
+.|+++++.+.+
T Consensus 180 ~~L~l~~n~l~~ 191 (347)
T 4fmz_A 180 YSLSLNYNQIED 191 (347)
T ss_dssp SEEECTTSCCCC
T ss_pred CEEEccCCcccc
Confidence 666665554433
No 28
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.15 E-value=2.3e-05 Score=70.82 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=90.6
Q ss_pred hHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHh---CCCCCceEEccCCCCCcHHHHHHHHh---hCCCCcEEeCCCc
Q 018291 128 DFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLGI---LKPKLNDVEGDSW 201 (358)
Q Consensus 128 D~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~---~Cp~L~~L~L~gC~~ItD~~l~~L~~---~cp~L~~L~ls~~ 201 (358)
+..|..+...-+.|++|+|+++.+|+|+|+..|+. ....|++|+|++| .++|.+..+|+. .-..|++|++++.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 56788888888999999999877899999888885 3567999999988 599999888874 4578999999999
Q ss_pred cccchhhh--hcc---cccccccc---c-c-cCCHHHHHHHH---hcCCCceecCCCCceeecC
Q 018291 202 EELVNTDI--GHG---AQSLRWFV---W-P-NIDKDSIEMMS---TECPRIIVNPKPSPFGFRG 252 (358)
Q Consensus 202 ~~~d~~~i--~~~---~~sL~~L~---C-~-~ITd~~l~~L~---~~Cp~L~~~p~~~~l~l~g 252 (358)
.+.+.|.. +.. -++|+.|. + . .|++++..+|+ ..-+.|+. +++..
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~------L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR------VGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCE------EECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCe------EeccC
Confidence 99988863 222 24577776 2 2 68888755543 56667777 77643
No 29
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=81.96 Aligned_cols=131 Identities=7% Similarity=-0.006 Sum_probs=56.9
Q ss_pred cCccEEEeeCCCCChHHHHHHH-HhCCCCCEEeecCCCCCCHH----HHHHHHhCCCCCceEEccCCCCCcHHHHHHHHh
Q 018291 114 SSWEILDISGSDVSDFGLVKVA-QMCKSLKAVDISCCDRITAA----GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 188 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la-~~C~~L~~LdLs~C~~ITD~----gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~ 188 (358)
++|++|+|++|.+++.+-..+. ..+++|++|+|+++. +++. ....+. .+++|++|++++|.- +...-..+ .
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l-~~~~~~~~-~ 166 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW-LKPGLKVLSIAQAHS-PAFSCEQV-R 166 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT-BCSCCCEEEEECCSS-CCCCTTSC-C
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh-hccCCCEEEeeCCCc-chhhHHHh-c
Confidence 4566666666644433222221 345556666666543 4431 111222 455666666655532 11000011 2
Q ss_pred hCCCCcEEeCCCccccchhhh-----hcccccccccc--cccCC--HHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 189 LKPKLNDVEGDSWEELVNTDI-----GHGAQSLRWFV--WPNID--KDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~~i-----~~~~~sL~~L~--C~~IT--d~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
.+++|+.|++++...+....+ ...+++|+.|+ ..+|+ ......+...+++|+. +++.++.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~------L~Ls~N~ 235 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS------LDLSHNS 235 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS------EECTTSC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE------EECCCCC
Confidence 345566666655544332111 12344555554 23344 2222233445555655 5555555
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.13 E-value=5.5e-07 Score=76.92 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=70.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHH-HHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA-ARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~-~l~~L~~~cp~ 192 (358)
++|+.|+|++|.+++. .....+++|++|+|++|. +++. +..+..++++|++|++++|. +++- .+..+ ..+++
T Consensus 49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l-~~l~~ 121 (168)
T 2ell_A 49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPL-KKLEC 121 (168)
T ss_dssp GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGG-SSCSC
T ss_pred CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHH-hcCCC
Confidence 7899999999977765 233468899999999875 6553 44555678999999999884 4432 22333 35889
Q ss_pred CcEEeCCCccccchhh----hhcccccccccc
Q 018291 193 LNDVEGDSWEELVNTD----IGHGAQSLRWFV 220 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~----i~~~~~sL~~L~ 220 (358)
|+.|+++++.+.+... ....+++|+.|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 9999998887765443 345677888776
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.11 E-value=6e-06 Score=78.10 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=47.9
Q ss_pred hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhhcccccc
Q 018291 137 MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSL 216 (358)
Q Consensus 137 ~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL 216 (358)
.+++|++|+|++|. +++..- ...+++|++|++++|. +++- .. ...+++|+.|+++++.+.+... ...+++|
T Consensus 219 ~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 289 (347)
T 4fmz_A 219 NMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI--NA-VKDLTKLKMLNVGSNQISDISV-LNNLSQL 289 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred cCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC--hh-HhcCCCcCEEEccCCccCCChh-hcCCCCC
Confidence 45555555555542 332211 2345555555555552 2211 11 1235555555555554443321 2334555
Q ss_pred cccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 217 RWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 217 ~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+ ...+++.....+ ..+|+|+. +++.+|++
T Consensus 290 ~~L~L~~n~l~~~~~~~l-~~l~~L~~------L~L~~n~l 323 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVI-GGLTNLTT------LFLSQNHI 323 (347)
T ss_dssp SEEECCSSCCCGGGHHHH-HTCTTCSE------EECCSSSC
T ss_pred CEEECcCCcCCCcChhHh-hccccCCE------EEccCCcc
Confidence 5555 234554444333 34666666 66666663
No 32
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.09 E-value=1e-06 Score=76.14 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=91.5
Q ss_pred CCHHHHHHhhc----cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCC
Q 018291 103 LADDVIMSLAD----SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 178 (358)
Q Consensus 103 ltD~~L~~l~~----~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~I 178 (358)
++.+.+..... ++|+.|+|++|.+++ +..+...+++|+.|+|++| .+++- .. ...+++|++|+++++. +
T Consensus 4 lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~Ls~N~-l 76 (176)
T 1a9n_A 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL--DG-FPLLRRLKTLLVNNNR-I 76 (176)
T ss_dssp CCHHHHHTSCEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CC-CCCCSSCCEEECCSSC-C
T ss_pred ccHHHHHHHHhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc--cc-cccCCCCCEEECCCCc-c
Confidence 55555554322 689999999997774 3445566679999999997 47752 22 3468999999999985 3
Q ss_pred cHHHHHHHHhhCCCCcEEeCCCccccchhh--hhcccccccccc--cccCCH--HHHHHHHhcCCCceecCCCCceeecC
Q 018291 179 NHAARRCLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDK--DSIEMMSTECPRIIVNPKPSPFGFRG 252 (358)
Q Consensus 179 tD~~l~~L~~~cp~L~~L~ls~~~~~d~~~--i~~~~~sL~~L~--C~~ITd--~~l~~L~~~Cp~L~~~p~~~~l~l~g 252 (358)
++-. ..+...+++|+.|++++..+.+-.. .-..+++|+.|+ ...+++ .....+...+|+|+. +++.+
T Consensus 77 ~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~------Ld~~~ 149 (176)
T 1a9n_A 77 CRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV------LDFQK 149 (176)
T ss_dssp CEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE------ETTEE
T ss_pred cccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccce------eCCCc
Confidence 3211 1122468999999999887765332 223567777776 222332 122235678899999 88888
Q ss_pred CC
Q 018291 253 FE 254 (358)
Q Consensus 253 C~ 254 (358)
+.
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 77
No 33
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.02 E-value=8.3e-07 Score=83.52 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=39.7
Q ss_pred cCccEEEeeCCCCChH----HHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHH--
Q 018291 114 SSWEILDISGSDVSDF----GLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG-- 187 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~----gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~-- 187 (358)
++|+.|+|++|.+++. ....+. .+++|++|+|++|. ++...-.. ..++++|++|+++++.-.++.++..-.
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred CCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 5556666666555431 111122 45566666665543 32211111 124555666666555444433332111
Q ss_pred hhCCCCcEEeCCCcccc
Q 018291 188 ILKPKLNDVEGDSWEEL 204 (358)
Q Consensus 188 ~~cp~L~~L~ls~~~~~ 204 (358)
..+++|+.|+++++.++
T Consensus 194 ~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME 210 (310)
T ss_dssp TSSCCCCSCBCCSSCCC
T ss_pred hcCCCCCEEECCCCCCC
Confidence 24555555555555544
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.02 E-value=1.4e-06 Score=82.23 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=7.5
Q ss_pred hCCCCcEEeCCCcccc
Q 018291 189 LKPKLNDVEGDSWEEL 204 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~ 204 (358)
.+++|+.|++++..+.
T Consensus 199 ~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 199 KFPTLQVLALRNAGME 214 (312)
T ss_dssp SCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCcCc
Confidence 3445555555444443
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.99 E-value=3.4e-06 Score=78.04 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=27.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|++++|.|++-. . ...+++|+.|+|++| ++++-.- ...+++|++|+++++
T Consensus 41 ~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--G-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN 95 (263)
T ss_dssp TTCSEEECTTSCCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS
T ss_pred CcCcEEECcCCCcccch--H-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC
Confidence 55666666665444321 1 134556666666654 2443221 234555666665555
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.99 E-value=4.3e-06 Score=78.78 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=79.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHH--hCCCCCceEEccCCCCCcH-HHHHHHHhhC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL--LHCHSLETLRCGGSPRSNH-AARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La--~~Cp~L~~L~L~gC~~ItD-~~l~~L~~~c 190 (358)
++|++|+|++|.++......+ ..+++|++|+|+++.-.++.++..-. ..+++|++|++++|.-.+- .....+...+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 455555555554432211112 35788888888887534334432222 6789999999999853322 2334555678
Q ss_pred CCCcEEeCCCccccchhh--hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 191 PKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 191 p~L~~L~ls~~~~~d~~~--i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
++|+.|++++..+.+... ....+++|+.|+ ...|+. +.. .-.++|+. +++.++.++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~--~~~~~L~~------L~Ls~N~l~ 287 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPK--GLPAKLSV------LDLSYNRLD 287 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCS--SCCSEEEE------EECCSSCCC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhh--hccCCceE------EECCCCCCC
Confidence 999999999887766442 223457788777 334441 111 01168888 999888854
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.94 E-value=7.3e-06 Score=77.37 Aligned_cols=57 Identities=12% Similarity=-0.050 Sum_probs=28.9
Q ss_pred hCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 189 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
.+++|+.|+++++.+.+... -..+++|+.|+ ...|++.. . ...+++|+. +++.+|.+
T Consensus 149 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~------L~L~~N~l 207 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS--P-LASLPNLIE------VHLKNNQI 207 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCE------EECTTSCC
T ss_pred CCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh--h-hcCCCCCCE------EEccCCcc
Confidence 34555555555554443222 23345555555 22333321 1 356677777 77777774
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.91 E-value=1.2e-05 Score=75.93 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=80.1
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~ 189 (358)
+.. ++|+.|+|++|.+++- .. ...+++|++|+|++|. +++-. . ...+++|++|++++|. +++- .. ...
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~ 171 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQ-ITNIS--P-LAGLTNLQYLSIGNAQ-VSDL--TP-LAN 171 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCCEEECCSSC-CCCC--GG-GTT
T ss_pred hcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEECCCCc-cCcCc--c-ccCCCCccEEEccCCc-CCCC--hh-hcC
Confidence 444 7788888888766652 22 3567888888888864 54322 1 3467888888888874 3321 11 346
Q ss_pred CCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 190 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 190 cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+++|+.|+++++.+.+... -..+++|+.|+ ...|++.. . ...|++|+. +++.++++
T Consensus 172 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~------L~l~~N~i 229 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--P-LANTSNLFI------VTLTNQTI 229 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCE------EEEEEEEE
T ss_pred CCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--c-ccCCCCCCE------EEccCCee
Confidence 7888888888877665443 34567777776 33444432 2 467888888 88888883
No 39
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.90 E-value=1.4e-05 Score=74.89 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=36.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++..- ...+++|+.|+|++|. +++ +.. ...+++|++|++++|. +++ +..+ ..+++|
T Consensus 68 ~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n~-i~~--~~~l-~~l~~L 136 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHNG-ISD--INGL-VHLPQL 136 (291)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTSC-CCC--CGGG-GGCTTC
T ss_pred CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc-CCC--Chh-hccCCCCCEEECCCCc-CCC--Chhh-cCCCCC
Confidence 555666666554443211 2345555555555542 333 112 2345555555555553 221 1111 234555
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
+.|+++++.+.
T Consensus 137 ~~L~l~~n~l~ 147 (291)
T 1h6t_A 137 ESLYLGNNKIT 147 (291)
T ss_dssp CEEECCSSCCC
T ss_pred CEEEccCCcCC
Confidence 55555554443
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.89 E-value=7.1e-06 Score=82.09 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=23.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
.+|+.|++++|.+++..+ ...+++|++|+|++| ++++.....+ ..+++|++|++++|
T Consensus 302 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMN 358 (520)
T ss_dssp CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSS
T ss_pred CceeEEEcCCCccccccc---hhhCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCC
Confidence 445555555553332211 023445555555544 2333222111 23445555555544
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.87 E-value=6.6e-06 Score=77.14 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=91.6
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~ 189 (358)
+.. ++|+.|+|++|.+++ +.. ...+++|++|+|++|. +++- .. ...+++|++|++++|. +++- .. ...
T Consensus 86 l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~--~~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~ 154 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNNK-ITDI--TV-LSR 154 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSC-CCCC--GG-GGG
T ss_pred cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCC--hh-hcCCCCCCEEEccCCc-CCcc--hh-hcc
Confidence 444 899999999998876 223 3578999999999974 6652 33 3468999999999985 3332 22 346
Q ss_pred CCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 190 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 190 cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+++|+.|+++++.+.+... -..+++|+.|+ ...|++- .. ...+++|+. +++.+++++
T Consensus 155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~------L~l~~n~i~ 213 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV------LELFSQECL 213 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE------EEEEEEEEE
T ss_pred CCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC--hh-hccCCCCCE------EECcCCccc
Confidence 8999999999988776544 34577888887 4456652 23 468999999 999999843
No 42
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.86 E-value=9.8e-06 Score=84.40 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=65.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.|++- .. ...+++|+.|+|++|. +++ +.. ...|++|+.|+|++|. +++. .. ...+++|
T Consensus 87 ~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l--~~-l~~l~~L 155 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDL--SS-LKDLKKLKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNK-ITDI--TV-LSRLTKL 155 (605)
T ss_dssp TTCCEEECCSSCCCCC--TT-STTCTTCCEEECTTSC-CCC--CGG-GGGCTTCSEEECCSSC-CCCC--GG-GGSCTTC
T ss_pred CCCCEEECcCCCCCCC--hh-hccCCCCCEEEecCCC-CCC--Ccc-ccCCCccCEEECCCCc-cCCc--hh-hcccCCC
Confidence 5566666666544431 11 2345666666666653 443 222 2356666666666663 2221 12 2346677
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+++++.+.+... ...+++|+.|+ ...|++- . -...|++|+. |+|.+|++
T Consensus 156 ~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~------L~L~~N~l 209 (605)
T 1m9s_A 156 DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDV------LELFSQEC 209 (605)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSE------EECCSEEE
T ss_pred CEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h-HHccCCCCCE------EEccCCcC
Confidence 777776665554433 33456777766 3345542 2 2456788888 88888873
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.82 E-value=2.6e-06 Score=81.26 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=28.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
++|+.|+|++|.++ .+......+++|++|+|++| .++ .+-.-...+++|++|++++|.
T Consensus 104 ~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-PLR--ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp TTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGGGGGCTTCCEEEEEEET
T ss_pred CCCCEEECCCCCcc--chhHHHhccCCCCEEECCCC-ccc--cCcHHHhcCcCCCEEECCCCC
Confidence 45666666666444 12111234566666666664 243 222122345666666666654
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.80 E-value=3e-05 Score=76.93 Aligned_cols=101 Identities=8% Similarity=-0.051 Sum_probs=47.8
Q ss_pred hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhhcccccc
Q 018291 137 MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSL 216 (358)
Q Consensus 137 ~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL 216 (358)
.+++|++|+|++|. +++.. . ...+++|++|++++|.-.+-. . ...+++|+.|+++++.+.+...+ ..+++|
T Consensus 263 ~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 333 (466)
T 1o6v_A 263 GLTKLTELKLGANQ-ISNIS--P-LAGLTALTNLELNENQLEDIS---P-ISNLKNLTYLTLYFNNISDISPV-SSLTKL 333 (466)
T ss_dssp TCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSCCSCCG---G-GGGCTTCSEEECCSSCCSCCGGG-GGCTTC
T ss_pred cCCCCCEEECCCCc-cCccc--c-ccCCCccCeEEcCCCcccCch---h-hcCCCCCCEEECcCCcCCCchhh-ccCccC
Confidence 34455555555442 32211 1 234555555555555321111 1 23456666666666555443332 245566
Q ss_pred cccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 217 RWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 217 ~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+ ...+++. . -...|++|+. +++.+|.+
T Consensus 334 ~~L~l~~n~l~~~--~-~l~~l~~L~~------L~l~~n~l 365 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--S-SLANLTNINW------LSAGHNQI 365 (466)
T ss_dssp CEEECCSSCCCCC--G-GGTTCTTCCE------EECCSSCC
T ss_pred CEeECCCCccCCc--h-hhccCCCCCE------EeCCCCcc
Confidence 6655 2234432 1 2346677777 77777764
No 45
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.78 E-value=1.3e-05 Score=83.56 Aligned_cols=122 Identities=14% Similarity=0.020 Sum_probs=79.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.|++..- ...+++|+.|+|++|. +++ +.. ...+++|++|+|++|.-.+ +..+ ..+++|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~l~~---l~~l-~~l~~L 133 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKD--LSS-LKDLKKLKSLSLEHNGISD---INGL-VHLPQL 133 (605)
T ss_dssp TTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCC--CTT-STTCTTCCEEECTTSCCCC---CGGG-GGCTTC
T ss_pred CCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCC--Chh-hccCCCCCEEEecCCCCCC---Cccc-cCCCcc
Confidence 788888888886654322 3568888888888874 554 222 3467888888888875322 1222 357888
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|+++++.+.+... -..+++|+.|+ ...|++..- ...|++|+. |++.+|.++
T Consensus 134 ~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~------L~Ls~N~i~ 188 (605)
T 1m9s_A 134 ESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN------LYLSKNHIS 188 (605)
T ss_dssp SEEECCSSCCCCCGG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCE------EECCSSCCC
T ss_pred CEEECCCCccCCchh-hcccCCCCEEECcCCcCCCchh---hccCCCCCE------EECcCCCCC
Confidence 888888877665432 23566777776 334443211 567888888 888888743
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.76 E-value=7.1e-07 Score=83.30 Aligned_cols=132 Identities=15% Similarity=0.013 Sum_probs=62.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|++|+|+++.+++.........+++|++|+|++|. ++...-. ....+++|++|+++++. +++..+......+++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNL 177 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCCCEEECCCCc-cccccchhHHhhCcCC
Confidence 5666666666644332211122356667777776653 3321111 12346667777776653 2211111112345666
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+++++.+.+... .-..+++|+.|+ ...+++..... ...+++|+. +++.+|.+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~------L~L~~N~l 235 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQV------LDYSLNHI 235 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCE------EECTTSCC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCE------eECCCCCC
Confidence 777766665544311 112345566655 22233211111 245667777 77777764
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.76 E-value=1.6e-06 Score=80.26 Aligned_cols=132 Identities=11% Similarity=-0.051 Sum_probs=74.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.+++.....+ ..+++|++|+|+++..+++-.-..+ ..+++|++|++++|.- ++..-.. ...+++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGL-QELGPGL-FRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCC-CCCCTTT-TTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcC-CEECHhH-hhCCcCC
Confidence 677778887776654322222 3567788888877654554322222 3577788888877642 2110111 2346778
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|++++..+..... .-..+++|+.|+ ...|+...-. ....+++|+. +++.++.++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~------L~l~~n~l~ 190 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDR------LLLHQNRVA 190 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCE------EECCSSCCC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-HhcCccccCE------EECCCCccc
Confidence 888877765543221 123456677766 2334421111 1245788888 888888743
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.76 E-value=2.8e-06 Score=81.11 Aligned_cols=127 Identities=15% Similarity=0.197 Sum_probs=77.1
Q ss_pred ccCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 113 DSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 113 ~~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
.++++.|+|+++.++ .+..-...+++|++|+|+++. ++ .+-.-...+++|++|++++|. ++ .+-.-...+++
T Consensus 80 ~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNP-LR--ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCC-CC--CCCGGGGGCTT
T ss_pred ccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCc-cc--cCcHHHhcCcC
Confidence 489999999999765 222212348999999999974 65 232223578999999999984 33 11111346889
Q ss_pred CcEEeCCCccccchhh--hh--------cccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 193 LNDVEGDSWEELVNTD--IG--------HGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~--i~--------~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
|+.|+++++..+.... ++ .++++|+.|+ ...|+ .+..-...+++|+. +++.+|.+
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~------L~L~~N~l 218 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKS------LKIRNSPL 218 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCE------EEEESSCC
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCE------EEccCCCC
Confidence 9999988765433211 11 1355666665 22333 11112345666666 66666663
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.76 E-value=1.8e-06 Score=84.68 Aligned_cols=131 Identities=11% Similarity=-0.053 Sum_probs=65.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|++|+|+++.|++..-..+ ..+++|++|+|++|.-.+.-.- ....++++|++|++++|.- ++.....+ ..+++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQF-LQLETGAF-NGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTT-CEECTTTT-TTCTTC
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECc-ccccccccCCEEeCCCCcc-CccChhhc-cCcccC
Confidence 566777777766554322222 3566777777776642111000 1123466777777776642 21111112 235667
Q ss_pred cEEeCCCccccchhhh---hcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 194 NDVEGDSWEELVNTDI---GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i---~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
++|+++++.+.+...- -..+++|+.|+ ...|++..-..+...+++|+. +++.+|.
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~------L~L~~n~ 165 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV------LDLTFNK 165 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE------EECTTCC
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE------EeCCCCc
Confidence 7777766655443221 23345666655 233443222223456667777 7776666
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.75 E-value=4e-05 Score=76.83 Aligned_cols=87 Identities=15% Similarity=0.025 Sum_probs=36.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHH--HhCCCCCceEEccCCCCCcHHHHHHHHhhCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEF--LLHCHSLETLRCGGSPRSNHAARRCLGILKP 191 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~L--a~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp 191 (358)
++|+.|++++|.++.-. ..+...+++|+.|+|++| ++++...... ...+++|++|++++|.-.+-.........++
T Consensus 310 ~~L~~L~l~~n~l~~ip-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKVFLVP-CSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCCCCCC-HHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCccccCC-HHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 45555555555433111 112234555555555554 2554332221 1244555555555553222111111223455
Q ss_pred CCcEEeCCCcc
Q 018291 192 KLNDVEGDSWE 202 (358)
Q Consensus 192 ~L~~L~ls~~~ 202 (358)
+|+.|+++++.
T Consensus 388 ~L~~L~Ls~N~ 398 (549)
T 2z81_A 388 NLTSLDISRNT 398 (549)
T ss_dssp TCCEEECTTCC
T ss_pred CCCEEECCCCC
Confidence 55555555443
No 51
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.74 E-value=8.4e-06 Score=75.24 Aligned_cols=128 Identities=7% Similarity=-0.021 Sum_probs=55.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++- .. ...+++|++|+|++| .+++-.-. ....+++|++|++++|. ++...- .....+++|
T Consensus 63 ~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 135 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SA-LKELTNLTYLILTGN-QLQSLPNG-VFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTNL 135 (272)
T ss_dssp TTCCEEECTTSCCCCC--GG-GTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTC
T ss_pred CCCcEEECCCCCCCCc--hh-hcCCCCCCEEECCCC-ccCccChh-HhcCCcCCCEEECCCCc-CCccCH-HHhccCCCC
Confidence 5555666665544431 11 234555666666554 23321111 11345556666665553 111000 011235556
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|+++++.+.+... .-..+++|+.|+ ...+++.. ......+++|+. +++.+|.+
T Consensus 136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~------L~L~~N~l 193 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKD------LRLYQNQL 193 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE------EECCSSCC
T ss_pred CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCE------EECCCCcC
Confidence 666665554432211 112345555555 22333211 111235566666 66666663
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.73 E-value=2.5e-05 Score=78.07 Aligned_cols=131 Identities=12% Similarity=0.026 Sum_probs=89.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCH-HHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD-~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
++|+.|+|++|.+++.....+ ..+++|+.|+|++|. +++ ..+......+++|++|++++|.-.+.-.. .....+++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~ 400 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKS 400 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCTT
T ss_pred CcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCcc
Confidence 789999999998887444333 468999999999975 664 23444456899999999998853321110 11235789
Q ss_pred CcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 193 LNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
|+.|+++++.+++..... ..++|+.|+ ..+|+ .+..-...+++|+. +++.+|.++
T Consensus 401 L~~L~Ls~N~l~~~~~~~-l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~------L~L~~N~l~ 457 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNKIK--SIPKQVVKLEALQE------LNVASNQLK 457 (520)
T ss_dssp CCEEECCSSCCCGGGGGS-CCTTCCEEECCSSCCC--CCCGGGGGCTTCCE------EECCSSCCC
T ss_pred CCEEECcCCCCCcchhhh-hcccCCEEECCCCccc--ccchhhhcCCCCCE------EECCCCcCC
Confidence 999999988776543211 126788887 44565 23332348999999 999999953
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.72 E-value=4.9e-07 Score=85.50 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=54.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++..-..+ ..+++|++|+|+++ .+++.....+...+++|++|++++|.-.+- ... ..+++|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~-~~l~~L 193 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQ-VVFAKL 193 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECC-CCCTTC
T ss_pred CCCCEEECCCCCCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc---ccc-cccccC
Confidence 345555555554443211111 23455555555554 344433333334455555555555531110 000 124555
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|++++..+.+.......+++|+.|+ ...|+. +......+++|+. +++.++++.
T Consensus 194 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~------L~l~~N~~~ 250 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH------FDLRGNGFH 250 (317)
T ss_dssp CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE------EECTTCCCB
T ss_pred CEEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCE------EEccCCCcc
Confidence 555555554433211122334455544 222331 1111234555555 555555544
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.72 E-value=3.7e-05 Score=76.29 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=31.4
Q ss_pred hCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 189 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
.+++|+.|+++++...+... -..+++|+.|+ ...+++..- ...+++|+. +++.+|.+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~------L~l~~n~l 343 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQR------LFFYNNKV 343 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCE------EECCSSCC
T ss_pred CCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCE------eECCCCcc
Confidence 35556666555554443322 23456666665 223443221 357788888 88888874
No 55
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.72 E-value=9.5e-07 Score=77.82 Aligned_cols=118 Identities=8% Similarity=-0.014 Sum_probs=67.6
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++ +. ....+++|+.|+|++|. ++ .+..+...+++|++|++++|. +++ +..+. .+++|
T Consensus 48 ~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~-l~~--l~~~~-~l~~L 117 (198)
T 1ds9_A 48 KACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQ-IAS--LSGIE-KLVNL 117 (198)
T ss_dssp TTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEE-CCC--HHHHH-HHHHS
T ss_pred CCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCc-CCc--CCccc-cCCCC
Confidence 677788887775544 22 22456778888887763 44 233344456778888877773 332 22333 35677
Q ss_pred cEEeCCCccccchhh--hhcccccccccc--cccCCH---------HHHHHHHhcCCCcee
Q 018291 194 NDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDK---------DSIEMMSTECPRIIV 241 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~--i~~~~~sL~~L~--C~~ITd---------~~l~~L~~~Cp~L~~ 241 (358)
+.|++++..+.+... .-..+++|+.|+ ...+++ .....+...+|+|+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 777777766655332 123456666665 222222 223344567888888
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.70 E-value=1.6e-06 Score=79.88 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=14.6
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCC
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC 149 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C 149 (358)
+++.|+|+++.+++.....+ ..+++|++|+|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n 62 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC 62 (276)
T ss_dssp TCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC
T ss_pred CccEEECCCCcccccCHhHh-ccccCCcEEECCCC
Confidence 44555555554443221111 23455555555554
No 57
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.69 E-value=2.8e-06 Score=90.06 Aligned_cols=59 Identities=8% Similarity=0.024 Sum_probs=28.8
Q ss_pred hCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 189 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
.+++|+.|+++++........-..+++|++|+ ...+++..-.. ...|++|+. +++.+|.
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~------L~Ls~n~ 258 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKL------LNISSNQ 258 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCE------EECCSSC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCE------EECCCCc
Confidence 45555555555544332111122345566665 33344332222 246677777 6666666
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.69 E-value=5.4e-06 Score=76.58 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=25.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|++|.+++..-. ....+++|++|+|++|. ++...- .....+++|++|++++|
T Consensus 85 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCc-CCccCH-HHhccCCCCCEEECCCC
Confidence 4555555555544321111 11234555555555542 331110 01123455555555555
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.64 E-value=9.3e-07 Score=89.21 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=62.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++..-..+ ..+++|+.|+|+++ .+++.....+...+++|++|+|++|.-.+. ..+ ..+++|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~-~~l~~L 193 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQ-VVFAKL 193 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECC-CCCTTC
T ss_pred CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc---ccc-ccCCCC
Confidence 456666666665553221111 24566666666664 355444444444566666666666642111 001 135666
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|++++..+++.......+++|+.|+ ...|+. +......+++|+. +++.|+++.
T Consensus 194 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~------L~l~~N~l~ 250 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEH------FDLRGNGFH 250 (487)
T ss_dssp CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCE------EECTTCCBC
T ss_pred CEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCE------EEcCCCCCc
Confidence 666666655443221122345555555 223332 1112344566666 666666654
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.63 E-value=2.6e-06 Score=85.76 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=37.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.+++-.-..+ ..|++|++|+|++|. +++-.-.. ..+|++|++|+++++. +++..-..+ ..+++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNP-IQSLALGAF-SGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT-TTCSSCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCC-CCEECTTTT-TTCTTC
T ss_pred ccccEEEccCCccCccChhHh-hCCCCceEEECCCCc-CCccCccc-ccCchhCCEEeCcCCc-CCccCHhhh-cCcccc
Confidence 345556666654443221111 245566666666552 43321111 1245556666665553 211100111 235555
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
++|+++++.+.
T Consensus 103 ~~L~L~~n~l~ 113 (570)
T 2z63_A 103 QKLVAVETNLA 113 (570)
T ss_dssp CEEECTTSCCC
T ss_pred ccccccccccc
Confidence 55555554433
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.63 E-value=1.5e-05 Score=73.69 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=89.8
Q ss_pred Hhhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHh
Q 018291 110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 188 (358)
Q Consensus 110 ~l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~ 188 (358)
.+.. ++|+.|+|++|.|++-.- ...+++|+.|+|++|. +++ +..+. . ++|++|++++|. +++- ..+ .
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~~~-~-~~L~~L~L~~N~-l~~~--~~l-~ 125 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKN--LNGIP-S-ACLSRLFLDNNE-LRDT--DSL-I 125 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSC--CTTCC-C-SSCCEEECCSSC-CSBS--GGG-T
T ss_pred HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCC--cCccc-c-CcccEEEccCCc-cCCC--hhh-c
Confidence 3444 899999999998776432 4579999999999974 654 22222 2 899999999984 4331 223 4
Q ss_pred hCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 189 LKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
.+++|+.|++++..+.+... -..+++|+.|+ ...|++. .....+++|+. +++.++++
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~------L~l~~N~~ 184 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW------IDLTGQKC 184 (263)
T ss_dssp TCTTCCEEECTTSCCCBCGG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE------EEEEEEEE
T ss_pred CcccccEEECCCCcCCCChH-HccCCCCCEEECCCCcCcch---HHhccCCCCCE------EeCCCCcc
Confidence 68999999999988776543 34567888887 4456654 34567899999 99999984
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.62 E-value=6.2e-06 Score=76.21 Aligned_cols=130 Identities=8% Similarity=-0.052 Sum_probs=73.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++..-.. ...+++|++|+|+++. ++...-.. ...+++|++|+++++. +++.....+ ..+++|
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L 179 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDT-FRDLGNLTHLFLHGNR-ISSVPERAF-RGLHSL 179 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSC-CCEECTTTT-TTCTTC
T ss_pred cCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhH-hccCCCccEEECCCCc-ccccCHHHh-cCcccc
Confidence 67778888877655422111 2457778888887753 44322111 2357778888887763 322111112 246778
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+.+... .-..+++|+.|+ ...|++... .....+++|+. +++.++++
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~------L~l~~N~~ 237 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQY------LRLNDNPW 237 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCE------EECCSSCE
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCE------EeccCCCc
Confidence 888887766554321 123456777776 334444222 22356788888 88888874
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.58 E-value=6e-06 Score=80.89 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=69.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHH-HHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~-La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
++|++|+|++|.+++.....+ ..+++|++|+|++| ++++..+.. ....+++|++|+++++.- ++..-..+...+++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTT
T ss_pred ccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCc
Confidence 677777777776554322222 35677777777776 365544332 123567777777777642 21111112335677
Q ss_pred CcEEeCCCccccchhh--h-hcccccccccc--cccCCHHH---H----HHHHhcCCCceecCCCCceeecCCCCC
Q 018291 193 LNDVEGDSWEELVNTD--I-GHGAQSLRWFV--WPNIDKDS---I----EMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~--i-~~~~~sL~~L~--C~~ITd~~---l----~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
|+.|+++++.+..... + .....+|+.|+ ...+++.. + ..-...+++|+. +++.+|.++
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~------L~Ls~n~l~ 225 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT------LDLSGNGFK 225 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE------EECTTSCCC
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee------EecCCCccc
Confidence 7777777665543211 1 11123444444 11121100 0 000234578888 888888743
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.57 E-value=8.4e-06 Score=77.78 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=69.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|++|+|++|.+++-.-.. ...+++|++|+|+++ .++.-.......++++|++|++++|..+++.....+ ..+++|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L 176 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSW-FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFL 176 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHH-HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEE
T ss_pred CCCCEEECCCCcCCcCCHhH-hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCC
Confidence 56666666666554322111 234666666666664 344211101223566666666666643332111111 235666
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCc
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 257 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~ 257 (358)
+.|+++++.+..... .-..+++|+.|+ ...++... ..+...+++|+. +++.+|.++.
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~------L~L~~n~l~~ 236 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL-EIFVDVTSSVEC------LELRDTDLDT 236 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH-HHHHHHTTTEEE------EEEESCBCTT
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccch-hhhhhhcccccE------EECCCCcccc
Confidence 666666554433211 123456777776 33454432 334556899999 9999998544
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.55 E-value=3.2e-05 Score=66.65 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=71.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcH-HHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNH-AARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD-~~l~~L~~~cp~ 192 (358)
++|+.|+|++|.|++- . -...+++|+.|+|+++ .++.-. ..+...+++|++|+++++.- ++ ..+..+. .+++
T Consensus 42 ~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~-~l~~ 114 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNNSL-VELGDLDPLA-SLKS 114 (176)
T ss_dssp TCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSCCC-CCGGGGGGGG-GCTT
T ss_pred CCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCC-cccccC-cchhhcCCCCCEEECCCCcC-CcchhhHhhh-cCCC
Confidence 4899999999988763 2 2346889999999986 466321 12235689999999998853 32 2122333 6889
Q ss_pred CcEEeCCCccccchhh----hhcccccccccccccCCHHH
Q 018291 193 LNDVEGDSWEELVNTD----IGHGAQSLRWFVWPNIDKDS 228 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~----i~~~~~sL~~L~C~~ITd~~ 228 (358)
|+.|++++..+.+... +...+++|+.|+....+...
T Consensus 115 L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999998877654332 24567788888844444433
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=5.7e-05 Score=82.05 Aligned_cols=131 Identities=12% Similarity=0.042 Sum_probs=73.3
Q ss_pred cCccEEEeeCCCCChH----------------HHHH-H-HHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDF----------------GLVK-V-AQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~----------------gL~~-l-a~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|++|.++.. .+.. + ...+++|+.|+|++|.-.+.- -....++++|++|+|+++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCC
Confidence 7888888888877762 1211 1 126788888888887532211 112246788888888887
Q ss_pred CCCcH-H---HHHHHH---hhCCCCcEEeCCCccccchhh--hhcccccccccc--cccCCHHHHHHHHhcCCCceecCC
Q 018291 176 PRSNH-A---ARRCLG---ILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPK 244 (358)
Q Consensus 176 ~~ItD-~---~l~~L~---~~cp~L~~L~ls~~~~~d~~~--i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~ 244 (358)
..++. . .+..+. ..+|+|+.|+++++.+..-.. .-..+++|+.|+ ...++ .+. ....+++|+.
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~--- 599 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTD--- 599 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESE---
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceE---
Confidence 65555 2 222222 345678888887766542111 123445666655 22333 222 2345566666
Q ss_pred CCceeecCCCC
Q 018291 245 PSPFGFRGFEV 255 (358)
Q Consensus 245 ~~~l~l~gC~~ 255 (358)
|++.+|.+
T Consensus 600 ---L~Ls~N~l 607 (876)
T 4ecn_A 600 ---LKLDYNQI 607 (876)
T ss_dssp ---EECCSSCC
T ss_pred ---EECcCCcc
Confidence 66666664
No 67
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.55 E-value=1e-05 Score=78.13 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=70.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+++++.++.... ...++|+.|+|++|. +++. . ....+++|++|+++++. +++.....+ ..+++|
T Consensus 205 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L 274 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LTDT--A-WLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRL 274 (390)
T ss_dssp SSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCEEESGGG-TTCSSC
T ss_pred CcceEEECCCCeeeeccc----cccccccEEECCCCC-Cccc--H-HHcCCCCccEEECCCCc-CCCcChhHc-cccccC
Confidence 456666766665543211 234678888888764 5543 2 23467788888888774 322111122 246778
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCc
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 257 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~ 257 (358)
+.|+++++.+.+.......+++|+.|+ ...++. +..-...+++|+. +++.+|+++.
T Consensus 275 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~------L~L~~N~i~~ 332 (390)
T 3o6n_A 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLEN------LYLDHNSIVT 332 (390)
T ss_dssp CEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSE------EECCSSCCCC
T ss_pred CEEECCCCcCcccCcccCCCCCCCEEECCCCccee--cCccccccCcCCE------EECCCCccce
Confidence 888887776654333234556777766 223432 1111235677777 8888877543
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.54 E-value=6.7e-06 Score=78.45 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=24.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|++|.+++..-..+ ..+++|++|+|+++ +++.-.-. ...++++|++|+++++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSYN-YLSNLSSS-WFKPLSSLTFLNLLGN 134 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCSSCCHH-HHTTCTTCSEEECTTC
T ss_pred CCCCEEECCCCccCccCHhhc-CCCCCCCEEECCCC-cCCcCCHh-HhCCCccCCEEECCCC
Confidence 455555555554443211111 23455555555553 23321111 1234555555555554
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.53 E-value=1.3e-06 Score=81.45 Aligned_cols=132 Identities=9% Similarity=-0.034 Sum_probs=87.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.++...-.. ...+++|++|+|++|. +++..+......+++|++|++++|. +++.....+ ..+++|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L 201 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL 201 (306)
T ss_dssp TTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred cCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh-cCCCCC
Confidence 89999999999765432222 2468999999999974 6553333334578999999999984 332211222 357899
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+++... .-..+++|+.|+ ...|++.....+....++|+. +++.|+++
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~------L~L~~N~~ 260 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF------LNLTQNDF 260 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE------EECTTCCE
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE------EEccCCCe
Confidence 999999887765432 234567888887 345554333333322348999 99999985
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.50 E-value=5.6e-06 Score=88.73 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=38.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
+++++|+|++|.|+...-..+ ..+++|+.|||++|..++.-.-.. ..++++|++|+|++|.- +...-..+ ..+++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~-~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l-~~~~p~~~-~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKI-YFLHPDAF-QGLFHL 99 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSC-SSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCC-CEECTTSS-CSCSSC
T ss_pred CCcCEEECCCCcCCccChhHC-cccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcC-cccCHhHc-cCCccc
Confidence 456666666665443211111 345666666666653322110011 13456666666665532 11100111 235556
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
+.|+++++...
T Consensus 100 ~~L~Ls~n~l~ 110 (844)
T 3j0a_A 100 FELRLYFCGLS 110 (844)
T ss_dssp CCEECTTCCCS
T ss_pred CEeeCcCCCCC
Confidence 66666555443
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.47 E-value=5.1e-06 Score=84.62 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=25.6
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|++|+|++|.+++-.-.. ...+++|++|+|++|. ++...-..+ .++++|++|++++|
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNP-IQSFSPGSF-SGLTSLENLVAVET 114 (606)
T ss_dssp TTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCC-CCCCCTTSS-TTCTTCCEEECTTS
T ss_pred ccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCc-ccccChhhc-CCcccCCEEEccCC
Confidence 45555555555444211111 1345555555555542 332211111 24555555555555
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.46 E-value=6.8e-05 Score=70.60 Aligned_cols=60 Identities=8% Similarity=0.191 Sum_probs=25.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHH-HHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVS-EFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~-~La~~Cp~L~~L~L~gC 175 (358)
++|+.|++++|.++......+ ..+++|+.|+|+++. +++.++. .....+++|++|+++++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHH-TTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ccccEEECCCCcccccCHhHh-cCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC
Confidence 345555555554443222211 345555555555542 3322111 11123455555555544
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.46 E-value=6.9e-06 Score=77.51 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=93.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++.....+...+++|++|+|++|. +++. ... ..+++|++|+++++.- ++-.- . ...+++|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~-~~l~~L~~L~Ls~N~l-~~l~~-~-~~~l~~L 216 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSNKL-AFMGP-E-FQSAAGV 216 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECCSSCC-CEECG-G-GGGGTTC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccc-cccccCCEEECCCCcC-Ccchh-h-hcccCcc
Confidence 8899999999998876666666678999999999975 5543 111 2489999999999853 32110 1 3357999
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
+.|++++..+..-...-..+++|+.|+ ...++...+......+++|+. +++.+|.
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~------l~l~~~~ 273 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT------VAKQTVK 273 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH------HHHHHHH
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE------EECCCch
Confidence 999999887664222224567888887 556775677777888999999 8887665
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.46 E-value=7.8e-06 Score=82.41 Aligned_cols=127 Identities=9% Similarity=-0.074 Sum_probs=86.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++... ..+++|+.|+|++|. +++..-..+ .++++|++|+++++. +++.....+...+++|
T Consensus 99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDTL 171 (487)
T ss_dssp TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCCCC-CCCcChHHHhhhCCcc
Confidence 788888888887665322 246889999999874 664322222 358899999999884 4433334455568999
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|+++++.+++.... ..+++|+.|+ ...|+.-.- -...+++|+. +++.+|.++
T Consensus 172 ~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~------L~Ls~N~l~ 227 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTW------ISLRNNKLV 227 (487)
T ss_dssp CEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG--GGGGGTTCSE------EECTTSCCC
T ss_pred cEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCH--hHcCCCCccE------EEecCCcCc
Confidence 9999998877654322 2467888887 444553211 1457899999 999999964
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.44 E-value=0.00055 Score=68.50 Aligned_cols=142 Identities=19% Similarity=0.086 Sum_probs=95.2
Q ss_pred cCccEEEeeCCCCChHHHHHH--HHhCCCCCEEeecCCCCCCHHH-HHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhC
Q 018291 114 SSWEILDISGSDVSDFGLVKV--AQMCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~l--a~~C~~L~~LdLs~C~~ITD~g-l~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~c 190 (358)
++|+.|+|++|.+++...... ...+++|+.|+|++|. +++-. .......+++|++|++++|. ++. +-.....+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~ 409 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQWP 409 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-Ccc--CChhhccc
Confidence 899999999999998765432 2468999999999974 66433 22345679999999999984 331 11112357
Q ss_pred CCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCccccccccCCCc
Q 018291 191 PKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDP 268 (358)
Q Consensus 191 p~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~eal~~~~l~~~ 268 (358)
++|+.|+++++.+..-. +...++|+.|+ ..++++. ...+|+|+. +++.+|.++ .+|... ..+
T Consensus 410 ~~L~~L~Ls~N~l~~l~--~~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~------L~Ls~N~l~--~ip~~~-~l~ 473 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVK--TCIPQTLEVLDVSNNNLDSF-----SLFLPRLQE------LYISRNKLK--TLPDAS-LFP 473 (549)
T ss_dssp TTCCEEECTTSCCSCCC--TTSCTTCSEEECCSSCCSCC-----CCCCTTCCE------EECCSSCCS--SCCCGG-GCT
T ss_pred ccccEEECCCCCccccc--chhcCCceEEECCCCChhhh-----cccCChhcE------EECCCCccC--cCCCcc-cCc
Confidence 89999999988765321 11235788877 3456542 258999999 999999964 444421 233
Q ss_pred ccccccc
Q 018291 269 FVNDIDP 275 (358)
Q Consensus 269 ~~~~~~~ 275 (358)
.++.++.
T Consensus 474 ~L~~L~L 480 (549)
T 2z81_A 474 VLLVMKI 480 (549)
T ss_dssp TCCEEEC
T ss_pred cCCEEec
Confidence 4444433
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.40 E-value=2.2e-05 Score=77.58 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=61.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.++.-.-. ....+++|+.|+|++|..++.-.-.. ...+++|++|++++|.- ++- .. ...+++|
T Consensus 147 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l-~~~--~~-~~~l~~L 220 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSY-AFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCNI-KDM--PN-LTPLVGL 220 (452)
T ss_dssp TTCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSCC-SSC--CC-CTTCTTC
T ss_pred CCCCEEECCCCCcceeCHh-HHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCcc-ccc--cc-ccccccc
Confidence 5666677766655421111 12346666667766665554322211 23466677777666632 110 11 1245666
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
+.|++++..+.+... .-.++++|+.|+ ..+|+...... ..++++|+. |++.++.
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~------L~L~~N~ 277 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVE------LNLAHNN 277 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCE------EECCSSC
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCE------EECCCCc
Confidence 666666655443211 122344555554 22232211111 234566666 6666665
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.40 E-value=2e-05 Score=80.94 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=53.1
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
+|+.|+|++|.+++. .....+++|+.|+|++|. +++.....+ ..+++|++|+|++|.-.+ +......+|+|+
T Consensus 233 ~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~ 304 (597)
T 3oja_B 233 ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNRLVA---LNLYGQPIPTLK 304 (597)
T ss_dssp CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSCCCE---EECSSSCCTTCC
T ss_pred CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCCCCC---CCcccccCCCCc
Confidence 355555555544432 112345566666666542 443222222 245556666665553211 011112355566
Q ss_pred EEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 195 DVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 195 ~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
.|+++++.+.........+++|+.|+ ...|+... ...++.|+. +++.|++
T Consensus 305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~------L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKN------LTLSHND 356 (597)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSE------EECCSSC
T ss_pred EEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCE------EEeeCCC
Confidence 66665554432211112344555554 22232221 334556666 6666655
No 78
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.40 E-value=1.1e-05 Score=71.02 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=60.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++ +..+...+++|+.|+|++| ++++ +..+. .+++|++|+++++.-.+-..+..+. .+++|
T Consensus 70 ~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~-~l~~L 142 (198)
T 1ds9_A 70 ENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLA-ALDKL 142 (198)
T ss_dssp TTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHT-TTTTC
T ss_pred CCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHh-cCCCC
Confidence 677777777775542 2233344577777777776 4554 23333 4677777777776432222233333 46777
Q ss_pred cEEeCCCccccchh-------h----hhcccccccccccccCCH
Q 018291 194 NDVEGDSWEELVNT-------D----IGHGAQSLRWFVWPNIDK 226 (358)
Q Consensus 194 ~~L~ls~~~~~d~~-------~----i~~~~~sL~~L~C~~ITd 226 (358)
+.|+++++.+.+.. . +-..+++|+.|+...|++
T Consensus 143 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~ 186 (198)
T 1ds9_A 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186 (198)
T ss_dssp SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred CEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCH
Confidence 77777766554331 0 123456677776444443
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.39 E-value=9.7e-06 Score=81.91 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=66.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
+++++|||+++.|+.-.-.. ...+++|++|||++|. |+.-.-. ...++++|++|+|+++. ++.-.... -..+++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~-f~~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~-l~~l~~~~-f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNP-IQSLALGA-FSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCC-CCEECGGG-GTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHH-HhCCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCc-CCCCCHHH-hcCCCCC
Confidence 35677777777554211111 1356777777777763 4421100 12356777777777763 22111111 1346777
Q ss_pred cEEeCCCccccchhhh-hcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 194 NDVEGDSWEELVNTDI-GHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i-~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
++|+++++.+...... -..+++|+.|+ ...|+...+......+++|+. +++.++.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~------L~L~~N~ 184 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH------LDLSSNK 184 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE------EECCSSC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh------hcccCcc
Confidence 7777776654432211 13455666665 223333222233455677777 7777766
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.38 E-value=1.7e-05 Score=78.14 Aligned_cols=128 Identities=10% Similarity=-0.017 Sum_probs=64.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.|+.-.-. ....+++|++|+|++|..++.-.-.. ..++++|++|++++|.- ++ +.. ...+++|
T Consensus 136 ~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l-~~--~~~-~~~l~~L 209 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNL-RE--IPN-LTPLIKL 209 (440)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTSCC-SS--CCC-CTTCSSC
T ss_pred ccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCcceeCcch-hhcccccCeecCCCCcC-cc--ccc-cCCCccc
Confidence 6677777777655432111 12356777777777766555322222 23567777777776632 21 001 1345677
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
+.|++++..+.+... .-.++++|+.|+ ..+|++..... ...+++|+. |++.++.
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~------L~L~~N~ 266 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVE------INLAHNN 266 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCE------EECTTSC
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCE------EECCCCC
Confidence 777776665543211 122345555554 22233221111 135566666 6666665
No 81
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.38 E-value=1.8e-05 Score=83.95 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=9.3
Q ss_pred hcCCCceecCCCCceeecCCC
Q 018291 234 TECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 234 ~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
..|++|+. +++.+|.
T Consensus 291 ~~~~~L~~------L~Ls~n~ 305 (768)
T 3rgz_A 291 GACDTLTG------LDLSGNH 305 (768)
T ss_dssp TTCTTCSE------EECCSSE
T ss_pred hhcCcCCE------EECcCCc
Confidence 34566666 6666665
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.36 E-value=3.6e-05 Score=79.53 Aligned_cols=131 Identities=11% Similarity=0.066 Sum_probs=79.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|++|+|++|.+++..-..+ ..+++|++|+|++|. ++.-.-.. ..+|++|++|++++|. +++..-..+ ..+++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 123 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNE-LSQLSDKT-FAFCTNLTELHLMSNS-IQKIKNNPF-VKQKNL 123 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSC-CCCCCTTT-TTTCTTCSEEECCSSC-CCCCCSCTT-TTCTTC
T ss_pred CcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCc-cCccChhh-hccCCCCCEEECCCCc-cCccChhHc-cccCCC
Confidence 788899998886654322222 468889999998873 55322111 2368889999998874 221100112 357888
Q ss_pred cEEeCCCccccchhhh-hcccccccccc--cccCCHHHHHHHH-hcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTDI-GHGAQSLRWFV--WPNIDKDSIEMMS-TECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i-~~~~~sL~~L~--C~~ITd~~l~~L~-~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
++|+++++.......- -..+++|+.|+ ...++...-..+. ..|++|+. +++.+|.+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~------L~L~~n~l 183 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK------LELSSNQI 183 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE------EECTTCCC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE------EECCCCcc
Confidence 8998888765543211 13567788776 2334433333332 35788888 88888873
No 83
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.36 E-value=8.2e-05 Score=74.38 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=36.1
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++-. ...+++|++|+|++|. ++.- . ...+++|++|++++|..+++.. ...+++|
T Consensus 106 ~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l---~-l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L 172 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEI---D-VSHNTQLTELDCHLNKKITKLD----VTPQTQL 172 (457)
T ss_dssp TTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCC---C-CTTCTTCCEEECTTCSCCCCCC----CTTCTTC
T ss_pred CcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-ccee---c-cccCCcCCEEECCCCCcccccc----cccCCcC
Confidence 55566666655444321 2345555666655542 3331 1 2245555555555554333221 1234555
Q ss_pred cEEeCCCccc
Q 018291 194 NDVEGDSWEE 203 (358)
Q Consensus 194 ~~L~ls~~~~ 203 (358)
+.|+++++.+
T Consensus 173 ~~L~ls~n~l 182 (457)
T 3bz5_A 173 TTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcc
Confidence 5555554443
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.35 E-value=8.9e-06 Score=82.80 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=25.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|++|.++. +..-...+++|++|+|++|. +++..-.. ...+++|++|++++|
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANK-FENLCQIS-ASNFPSLTHLSIKGN 335 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCC-CSBGGGGC-GGGCTTCSEEECCSC
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEECccCC-cCcCchhh-hhccCcCCEEECCCC
Confidence 455555555554431 11111335555555555542 33221111 123555555555555
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.35 E-value=4.1e-05 Score=77.70 Aligned_cols=14 Identities=0% Similarity=-0.045 Sum_probs=8.0
Q ss_pred cCCCceecCCCCceeecCCC
Q 018291 235 ECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 235 ~Cp~L~~~p~~~~l~l~gC~ 254 (358)
.+++|+. +++.++.
T Consensus 471 ~l~~L~~------L~L~~N~ 484 (562)
T 3a79_B 471 HLQALQE------LNVASNQ 484 (562)
T ss_dssp SSCCCSE------EECCSSC
T ss_pred CCCCCCE------EECCCCC
Confidence 4555555 5555555
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.35 E-value=2.4e-05 Score=75.47 Aligned_cols=80 Identities=13% Similarity=0.000 Sum_probs=35.9
Q ss_pred CCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCce
Q 018291 164 CHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRII 240 (358)
Q Consensus 164 Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~ 240 (358)
.++|++|++++|.- ++. .. ...+++|+.|++++..+.+... .-..+++|+.|+ ...++. +......+|+|+
T Consensus 225 ~~~L~~L~l~~n~l-~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~ 298 (390)
T 3o6n_A 225 NVELTILKLQHNNL-TDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLK 298 (390)
T ss_dssp CSSCCEEECCSSCC-CCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCC
T ss_pred cccccEEECCCCCC-ccc--HH-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCC
Confidence 35566666665532 221 11 2345666666666554443211 112344555554 222332 111123456666
Q ss_pred ecCCCCceeecCCCC
Q 018291 241 VNPKPSPFGFRGFEV 255 (358)
Q Consensus 241 ~~p~~~~l~l~gC~~ 255 (358)
. +++.+|.+
T Consensus 299 ~------L~L~~n~l 307 (390)
T 3o6n_A 299 V------LDLSHNHL 307 (390)
T ss_dssp E------EECCSSCC
T ss_pred E------EECCCCcc
Confidence 6 66666653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.35 E-value=2.5e-06 Score=77.01 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=26.4
Q ss_pred cCccEEEeeCCC-CChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSD-VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~-ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|+++. ++.-.-.. ...+++|++|+|++|.+++.-.-.. ..++++|++|+++++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDA-LKELPLLKFLGIFNT 115 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTS-EECCTTCCEEEEEEE
T ss_pred CCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHH-hCCCCCCCEEeCCCC
Confidence 455555555552 43211111 1345555555555544444211111 124555555555554
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.31 E-value=2.4e-05 Score=71.16 Aligned_cols=130 Identities=8% Similarity=0.026 Sum_probs=57.6
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.+++..-.. ...+++|++|+|+++ +++.-... ....+++|++|+++++. ++.-.- .+...+++|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L 133 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANN-QLASLPLG-VFDHLTQLDKLYLGGNQ-LKSLPS-GVFDRLTKL 133 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred ccCCEEECCCCcCCccCHhH-hccCCcCCEEECCCC-cccccChh-HhcccCCCCEEEcCCCc-CCCcCh-hHhccCCcc
Confidence 56666666666444321111 134566666666664 24421111 12345666666666552 221000 011235666
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..... .-..+++|+.|+ ...|+...- .....+++|+. +++.++++
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~l~~N~~ 191 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQT------ITLFGNQF 191 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSCCB
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCE------EEeeCCce
Confidence 666666554432221 112345555555 222331111 11234566666 66666663
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.30 E-value=1.6e-05 Score=73.14 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=5.5
Q ss_pred CCCCceEEccCC
Q 018291 164 CHSLETLRCGGS 175 (358)
Q Consensus 164 Cp~L~~L~L~gC 175 (358)
+++|++|+++++
T Consensus 132 l~~L~~L~Ls~n 143 (270)
T 2o6q_A 132 LTKLTYLSLGYN 143 (270)
T ss_dssp CTTCCEEECCSS
T ss_pred CcCCCEEECCCC
Confidence 444444444444
No 90
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.29 E-value=1.5e-05 Score=81.22 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=32.1
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
++|+.|+|++|.+++..-..+ ..+++|++|+|++|.....-... ....+++|++|++++|.
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDD 361 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSC
T ss_pred ccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCc
Confidence 677778887776664322222 35667777777766321111101 12245666666666553
No 91
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00016 Score=78.48 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=85.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCH----HHHHHHH---hCCCCCceEEccCCCCCcHHHHHH-
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA----AGVSEFL---LHCHSLETLRCGGSPRSNHAARRC- 185 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD----~gl~~La---~~Cp~L~~L~L~gC~~ItD~~l~~- 185 (358)
++|+.|+|++|.++..-- .....+++|+.|+|++|..++. .++..+. ..+++|++|+|++|.- + .+-.
T Consensus 491 ~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~--~ip~~ 566 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E--EFPAS 566 (876)
T ss_dssp TTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C--BCCCH
T ss_pred CCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C--ccCCh
Confidence 789999999995443211 2234689999999999865876 4455444 4678999999998853 2 1211
Q ss_pred -HHhhCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCC-ceecCCCCceeecCCCCC
Q 018291 186 -LGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPR-IIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 186 -L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~-L~~~p~~~~l~l~gC~~s 256 (358)
....+++|+.|++++..+..-. .-..+++|+.|+ ...++ .+..-...+++ |+. |++.+|.++
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~------L~Ls~N~L~ 632 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG------LGFSHNKLK 632 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE------EECCSSCCC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCE------EECcCCCCC
Confidence 2235889999999887765222 223456777776 33344 22222456777 888 888888854
No 92
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.27 E-value=1e-05 Score=80.11 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=76.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.|++..-..+ ..+++|++|+|+++. ++.-.-. ...++++|++|+|+++.-.+ ..-.. ...+++|
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~i~~-~~~~~-~~~l~~L 130 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNR-LKLIPLG-VFTGLSNLTKLDISENKIVI-LLDYM-FQDLYNL 130 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-CCSCCTT-SSTTCTTCCEEECTTSCCCE-ECTTT-TTTCTTC
T ss_pred CCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCc-CCccCcc-cccCCCCCCEEECCCCcccc-CChhH-ccccccC
Confidence 678888888876664322222 357788888888753 5432211 12357888888888774221 10011 2357788
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..... .-..+++|+.|+ ...+++..- ....++++|+. +++.++.+
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~------L~l~~n~i 188 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIV------LRLRHLNI 188 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCE------EEEESCCC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcE------EeCCCCcC
Confidence 888887765543321 123567788777 334443222 22357899999 99999884
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.26 E-value=1.8e-05 Score=72.81 Aligned_cols=129 Identities=10% Similarity=0.019 Sum_probs=71.6
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.++.-.- .+...+++|++|+|+++. ++.-... ....+++|++|+++++.- +...... ...+++|
T Consensus 61 ~~L~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L 135 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPA-GIFKELKNLETLWVTDNK-LQALPIG-VFDQLVNLAELRLDRNQL-KSLPPRV-FDSLTKL 135 (270)
T ss_dssp TTCCEEECCSSCCSCCCT-TTTSSCTTCCEEECCSSC-CCCCCTT-TTTTCSSCCEEECCSSCC-CCCCTTT-TTTCTTC
T ss_pred CCCCEEECCCCccCeeCh-hhhcCCCCCCEEECCCCc-CCcCCHh-HcccccCCCEEECCCCcc-CeeCHHH-hCcCcCC
Confidence 678888888876552211 122457888888888763 5432221 224578888888887642 2111111 1357788
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
+.|++++..+..... .-..+++|+.|+ ...|+...-. ....+++|+. +++.++.
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~------L~L~~N~ 192 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG-AFDKLTELKT------LKLDNNQ 192 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCE------EECCSSC
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh-HhccCCCcCE------EECCCCc
Confidence 888887765543221 123456666665 2223321111 1245677777 7777777
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.25 E-value=1.8e-05 Score=72.09 Aligned_cols=130 Identities=7% Similarity=-0.018 Sum_probs=79.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.+++..-..+ ..+++|++|+|+++ .+++..-.. ...+++|++|+++++. ++.... .....+++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYN-QLQTLSAGV-FDDLTELGTLGLANNQ-LASLPL-GVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTC
T ss_pred CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCC-cCCccCHhH-hccCCcCCEEECCCCc-ccccCh-hHhcccCCC
Confidence 578889999886654332222 36788999999886 455422211 2467889999998874 221111 112357888
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..... .-..+++|+.|+ ..+|+.-.- .....+++|+. |++.++.+
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~------L~L~~N~l 167 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQT------LSLSTNQL 167 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE------EECCSSCC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCE------EECCCCcC
Confidence 999888876653322 123467777776 334442111 12346788888 88888883
No 95
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=9.2e-05 Score=76.40 Aligned_cols=124 Identities=12% Similarity=0.125 Sum_probs=77.3
Q ss_pred HHHhhccCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHH
Q 018291 108 IMSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG 187 (358)
Q Consensus 108 L~~l~~~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~ 187 (358)
+..+....|+.|+|++|.|+. +.. ...+++|+.|+|+++ +++ .|-.-..++++|++|+|+++. ++. +..+
T Consensus 435 i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l- 504 (567)
T 1dce_A 435 VLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNA-LEN--VDGV- 504 (567)
T ss_dssp HHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGG-
T ss_pred ccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCC-CCC--Cccc-
Confidence 333333578999999997664 333 356889999999986 466 232223478999999999874 332 2233
Q ss_pred hhCCCCcEEeCCCccccchh--hhhcccccccccc--cccCCHH--HHHHHHhcCCCcee
Q 018291 188 ILKPKLNDVEGDSWEELVNT--DIGHGAQSLRWFV--WPNIDKD--SIEMMSTECPRIIV 241 (358)
Q Consensus 188 ~~cp~L~~L~ls~~~~~d~~--~i~~~~~sL~~L~--C~~ITd~--~l~~L~~~Cp~L~~ 241 (358)
..+++|+.|++++..+.+.. ..-..+++|+.|+ ...++.. .+..+...+|+|+.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 35889999999887665542 1123456676665 2223221 23345556777776
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.22 E-value=0.00013 Score=74.04 Aligned_cols=153 Identities=11% Similarity=0.045 Sum_probs=96.4
Q ss_pred HHHHHh-hccCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHH
Q 018291 106 DVIMSL-ADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARR 184 (358)
Q Consensus 106 ~~L~~l-~~~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~ 184 (358)
+.+..+ ...+|+.|++++|.+++..+ ...+++|++|+|+++ ++++.....+ ..+++|++|+++++.-.+-..+.
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHH
T ss_pred hhhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCCCcCCcccch
Confidence 333333 34789999999986654321 146899999999997 4776333332 57899999999998533211222
Q ss_pred HHHhhCCCCcEEeCCCccccchhh--hhcccccccccc--cccCCHHHHHHHHhcC-CCceecCCCCceeecCCCCCccc
Q 018291 185 CLGILKPKLNDVEGDSWEELVNTD--IGHGAQSLRWFV--WPNIDKDSIEMMSTEC-PRIIVNPKPSPFGFRGFEVPREA 259 (358)
Q Consensus 185 ~L~~~cp~L~~L~ls~~~~~d~~~--i~~~~~sL~~L~--C~~ITd~~l~~L~~~C-p~L~~~p~~~~l~l~gC~~s~ea 259 (358)
.....+++|+.|++++..+.+... ...++++|+.|+ ...+++... ... ++|+. +++.+|.++ .
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~------L~L~~N~l~--~ 464 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKV------LDLHNNRIM--S 464 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSE------EECCSSCCC--C
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCcCCE------EECCCCcCc--c
Confidence 223468999999999887665221 234567888887 445664322 222 68999 999999854 3
Q ss_pred cccccCCCcccccccc
Q 018291 260 FPDITLDDPFVNDIDP 275 (358)
Q Consensus 260 l~~~~l~~~~~~~~~~ 275 (358)
+|.-....+.++.++.
T Consensus 465 ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 465 IPKDVTHLQALQELNV 480 (562)
T ss_dssp CCTTTTSSCCCSEEEC
T ss_pred cChhhcCCCCCCEEEC
Confidence 4433334445554443
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.22 E-value=1.4e-05 Score=80.39 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=10.6
Q ss_pred HhcCCCceecCCCCceeecCCCC
Q 018291 233 STECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 233 ~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
...|++|+. +++.+|.+
T Consensus 466 ~~~l~~L~~------L~l~~n~l 482 (570)
T 2z63_A 466 FTELRNLTF------LDLSQCQL 482 (570)
T ss_dssp CTTCTTCCE------EECTTSCC
T ss_pred hhcccCCCE------EECCCCcc
Confidence 345666666 66666664
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.21 E-value=2.5e-05 Score=68.83 Aligned_cols=130 Identities=8% Similarity=-0.019 Sum_probs=79.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.+++..- .....+++|++|+|+++ +++.-.- .....+++|++|+++++. ++...- .....+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN-GVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCCh-hhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCC
Confidence 578899999986663221 12246889999999986 4653211 122468889999998874 221100 112357889
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..... .-..+++|+.|+ ...|++.. ......+++|+. +++.++++
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~------L~l~~N~~ 160 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQY------IWLHDNPW 160 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE------EECCSCCB
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccE------EEecCCCe
Confidence 999988876654322 123456777776 23344211 122356888888 88888874
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.21 E-value=2.9e-05 Score=80.28 Aligned_cols=131 Identities=7% Similarity=0.035 Sum_probs=87.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
+++++|+|+++.+++-.-.. ...|++|++|+|+++. ++...-..+ .+|++|++|++++|. ++.-.-..+ ..+++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNT-ISKLEPELC-QKLPMLKVLNLQHNE-LSQLSDKTF-AFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG-GGGGTTCSEEECCSSC-CCCCCTTHH-HHCTTCCEEECCSSC-CCCCCTTTT-TTCTTC
T ss_pred CCCcEEECCCCCCCCcCHHH-HhCCCcCcEEECCCCc-cCccCHHHH-hcccCcCEEECCCCc-cCccChhhh-ccCCCC
Confidence 68999999999766432222 2468999999999974 654333333 468999999999984 332111122 358999
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
+.|+++++.+..... .-..+++|+.|+ ...++...... ..+|++|+. +++.+|.++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~------L~L~~n~l~ 158 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQE------LLLSNNKIQ 158 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCE------EECCSSCCC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCE------EEccCCccc
Confidence 999999886654321 124567888887 22344322212 257999999 999999843
No 100
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.17 E-value=2e-05 Score=80.17 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=20.0
Q ss_pred hcCCCceecCCCCceeecCCCCCccccccccCCCcccccccccc
Q 018291 234 TECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSA 277 (358)
Q Consensus 234 ~~Cp~L~~~p~~~~l~l~gC~~s~eal~~~~l~~~~~~~~~~~~ 277 (358)
.++++|+. +++.+|.++...++......+.++.++...
T Consensus 445 ~~l~~L~~------L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 445 LGLTSLNT------LKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TTCTTCCE------EECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred cCCCCCCE------EECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 45666666 667666654433444444444555544433
No 101
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.16 E-value=5.7e-05 Score=74.73 Aligned_cols=133 Identities=14% Similarity=0.026 Sum_probs=83.8
Q ss_pred Hhhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHh
Q 018291 110 SLAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGI 188 (358)
Q Consensus 110 ~l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~ 188 (358)
.|.+ ++|+.|+|++|.+++-.-. +...+++|++|+|+++. ++...-.. ...+++|++|+++++.- +......+ .
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~-~ 149 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDISENK-IVILLDYM-FQDLYNLKSLEVGDNDL-VYISHRAF-S 149 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEEECCTTC-CEECTTSS-T
T ss_pred hhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEEECCCCc-cccCChhH-ccccccCCEEECCCCcc-ceeChhhc-c
Confidence 3444 7899999999876643221 12468999999999874 54322122 25789999999998742 21111122 3
Q ss_pred hCCCCcEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 189 LKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
.+++|+.|+++++.+.+... .-..+++|+.|+ ...++...- .....+++|+. +++.+|+
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~------L~l~~~~ 211 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKV------LEISHWP 211 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCE------EEEECCT
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-hhcccCcccce------eeCCCCc
Confidence 57899999998876654322 124567788776 223332111 12357889999 9999988
No 102
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.16 E-value=2.2e-05 Score=77.60 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=27.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|++|.|++.....+ ..+++|++|+|+++. ++.-.-. ...++++|++|+|+++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSC
T ss_pred CCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCC
Confidence 566666666665543221111 245566666666542 3321111 1124555555555554
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.12 E-value=0.00012 Score=76.06 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=50.0
Q ss_pred cCccEEEeeCCCCChH------------H----HHHHHH--hCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDF------------G----LVKVAQ--MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~------------g----L~~la~--~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|++|+|++|.++.. . +..-.. .+++|++|+|++|.-.+. +-.-..++++|++|++++|
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACN 283 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCC
Confidence 7788888888877652 0 111112 577788888877742221 0111235677777777777
Q ss_pred CCCcH-HHHHHHHh-----hCCCCcEEeCCCcccc
Q 018291 176 PRSNH-AARRCLGI-----LKPKLNDVEGDSWEEL 204 (358)
Q Consensus 176 ~~ItD-~~l~~L~~-----~cp~L~~L~ls~~~~~ 204 (358)
..++. ..-..++. .+++|+.|+++++.+.
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 64555 32233332 2466777776665544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.11 E-value=3.6e-05 Score=69.46 Aligned_cols=130 Identities=10% Similarity=-0.063 Sum_probs=79.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.|+...-. ....+++|++|+|+++. ++.-.- .....+++|++|+|+++. ++.-. ..+...+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQ-LTVLP-SAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCc-CCccC-hhHhCcchhh
Confidence 6789999999866542111 12467889999999864 543211 122468889999998873 33110 0112357889
Q ss_pred cEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..-......+++|+.|+ ...|+.-.- .....+++|+. +++.+.++
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~l~~N~~ 171 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTH------AYLFGNPW 171 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCE------EECTTSCB
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCE------EEeeCCCc
Confidence 999988876653211124566777776 233432111 22356788888 88888884
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.10 E-value=4.2e-05 Score=71.69 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=23.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|+++.|+.-... ..+++|+.|+|+++ +++ .+......+++|++|+++++
T Consensus 55 ~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N-~l~--~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHN-QLQ--SLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTSCCCEEECC---SCCTTCCEEECCSS-CCS--SCCCCTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCccCcccCC---CCCCcCCEEECCCC-cCC--cCchhhccCCCCCEEECCCC
Confidence 4455555555544321110 23455555555543 233 11111233455555555544
No 106
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.09 E-value=6.7e-05 Score=77.09 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=66.6
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhhcccccccc
Q 018291 139 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRW 218 (358)
Q Consensus 139 ~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~ 218 (358)
++|+.|+|++|. +++. . ....+++|++|+|++|. +++.....+ ..+++|+.|+++++.++........+++|+.
T Consensus 232 ~~L~~L~L~~n~-l~~~--~-~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 232 VELTILKLQHNN-LTDT--A-WLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNRLVALNLYGQPIPTLKV 305 (597)
T ss_dssp SCCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSCCCEEECSSSCCTTCCE
T ss_pred CCCCEEECCCCC-CCCC--h-hhccCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCCCCCCCcccccCCCCcE
Confidence 467777777753 5542 2 23468889999998875 322111122 3578899999888776654333445778888
Q ss_pred cc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCc
Q 018291 219 FV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 257 (358)
Q Consensus 219 L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~ 257 (358)
|+ ...++. +..-...+++|+. |++.+|.++.
T Consensus 306 L~Ls~N~l~~--i~~~~~~l~~L~~------L~L~~N~l~~ 338 (597)
T 3oja_B 306 LDLSHNHLLH--VERNQPQFDRLEN------LYLDHNSIVT 338 (597)
T ss_dssp EECCSSCCCC--CGGGHHHHTTCSE------EECCSSCCCC
T ss_pred EECCCCCCCc--cCcccccCCCCCE------EECCCCCCCC
Confidence 87 334542 2222356799999 9999999543
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.08 E-value=0.00023 Score=71.09 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~ 189 (358)
+.. ++|+.|++++|.+++-. ...+++|++|++++|..+++-+ ...+++|++|++++|. +++- . ...
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~l--~--l~~ 189 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK-ITEL--D--VSQ 189 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC-CCCC--C--CTT
T ss_pred CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCc-ccee--c--ccc
Confidence 444 88999999998776532 3468899999999987666542 2367889999998874 3321 1 235
Q ss_pred CCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 190 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 190 cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
++.|+.|++++..+.+.. -..+++|+.|+ ...+++ +. ...|++|+. +++.++.+
T Consensus 190 l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~------L~l~~N~l 245 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTY------FDCSVNPL 245 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSE------EECCSSCC
T ss_pred CCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc--cC--ccccCCCCE------EEeeCCcC
Confidence 788888888877665542 23456777776 334554 22 457788888 88888773
No 108
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.07 E-value=2.9e-05 Score=76.52 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=32.1
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
++|+.|+|++|.|++-....+ ..+++|++|+|+++ +++.-.-. ....+++|++|+++++.
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNP 147 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCC
T ss_pred CCCCEEECCCCcCCccChhhc-cCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCc
Confidence 667777777775554322222 34667777777765 34421111 12345666666666653
No 109
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.07 E-value=6.7e-05 Score=70.67 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=75.1
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.+++-.- ...++|++|+++++ .++...-.. ...+++|++|+++++.-.+..........+++|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPE----KMPKTLQELRVHEN-EITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCCEEECCSSCCSBCCS----SCCTTCCEEECCSS-CCCBBCHHH-HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCEEECCCCcCCccCh----hhcccccEEECCCC-cccccCHhH-hcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 667777777765542110 12367777777775 355433332 346888999998887532111011112346777
Q ss_pred cEEeCCCccccchh----------------------hhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCcee
Q 018291 194 NDVEGDSWEELVNT----------------------DIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFG 249 (358)
Q Consensus 194 ~~L~ls~~~~~d~~----------------------~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~ 249 (358)
+.|++++..+..-. ..-..+++|+.|+ ...|++.... ....+++|+. ++
T Consensus 174 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~------L~ 246 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRE------LH 246 (330)
T ss_dssp CEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCE------EE
T ss_pred CEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh-hccCCCCCCE------EE
Confidence 77777655432210 0012345566655 2334432211 1246778888 88
Q ss_pred ecCCCCCccccccccCCCccccccc
Q 018291 250 FRGFEVPREAFPDITLDDPFVNDID 274 (358)
Q Consensus 250 l~gC~~s~eal~~~~l~~~~~~~~~ 274 (358)
+.+|.++ .+|......+.++.++
T Consensus 247 L~~N~l~--~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 247 LNNNKLV--KVPGGLADHKYIQVVY 269 (330)
T ss_dssp CCSSCCS--SCCTTTTTCSSCCEEE
T ss_pred CCCCcCc--cCChhhccCCCcCEEE
Confidence 8888754 3333333334444433
No 110
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.99 E-value=0.00014 Score=75.56 Aligned_cols=131 Identities=8% Similarity=-0.047 Sum_probs=79.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCH----HHHHHHH--hCCCCCceEEccCCCCCcHHHHHH--
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA----AGVSEFL--LHCHSLETLRCGGSPRSNHAARRC-- 185 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD----~gl~~La--~~Cp~L~~L~L~gC~~ItD~~l~~-- 185 (358)
++|++|+|++|.++..--.. ...+++|++|+|++|..++. .++..+. ..+++|++|++++|. ++ .+-.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~ 324 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVET 324 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHH
T ss_pred CCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchh
Confidence 78999999999654321112 24689999999999866887 3333331 346899999999885 33 1211
Q ss_pred HHhhCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCC-ceecCCCCceeecCCCCC
Q 018291 186 LGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPR-IIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 186 L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~-L~~~p~~~~l~l~gC~~s 256 (358)
....+++|+.|+++++.+......-..+++|+.|+ ...++ .+..-...+++ |+. +++.++.++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~------L~Ls~N~l~ 390 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVEN------LSFAHNKLK 390 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCE------EECCSSCCS
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCcE------EEccCCcCc
Confidence 22358899999998876652211122345666665 22333 12112345566 777 777777643
No 111
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.92 E-value=8.5e-05 Score=68.13 Aligned_cols=16 Identities=0% Similarity=-0.199 Sum_probs=10.0
Q ss_pred hcCCCceecCCCCceeecCCCC
Q 018291 234 TECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 234 ~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
..+++|+. +++.+.++
T Consensus 221 ~~l~~L~~------L~l~~N~~ 236 (276)
T 2z62_A 221 DRLTSLQK------IWLHTNPW 236 (276)
T ss_dssp TTCCSCCE------EECCSSCB
T ss_pred cccccccE------EEccCCcc
Confidence 45666666 66666664
No 112
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.90 E-value=2.9e-05 Score=69.90 Aligned_cols=129 Identities=9% Similarity=-0.047 Sum_probs=81.9
Q ss_pred cCccEEEeeC-CCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCc---eEEccCCCCCcHHHHHHHHhh
Q 018291 114 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE---TLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 114 ~~L~~L~Ls~-c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~---~L~L~gC~~ItD~~l~~L~~~ 189 (358)
++|++|+|++ +.++.-.-. ....+++|++|+|++|. ++. +.. ...+++|+ +|+++++..++.-.-..+ ..
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~ 153 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QG 153 (239)
T ss_dssp TTCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TT
T ss_pred cCCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCcccc-cc
Confidence 7899999998 577642211 12468999999999974 543 222 34688888 999999855543211122 35
Q ss_pred CCCCc-EEeCCCccccchhhhhcccccccccc---cccCCHHHHHHHHhcC-CCceecCCCCceeecCCCC
Q 018291 190 KPKLN-DVEGDSWEELVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTEC-PRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 190 cp~L~-~L~ls~~~~~d~~~i~~~~~sL~~L~---C~~ITd~~l~~L~~~C-p~L~~~p~~~~l~l~gC~~ 255 (358)
+++|+ .|++++..+..-........+|+.|+ +..++.-.-. ...++ ++|+. +++.++.+
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~------L~l~~N~l 217 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSL------LDVSQTSV 217 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSE------EECTTCCC
T ss_pred hhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcE------EECCCCcc
Confidence 88999 99998876553221111125777776 4335532111 22456 89999 99999884
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.89 E-value=4.2e-05 Score=73.66 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=23.9
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++|+.|+|+++.|+.-.-.. ...+++|++|+|+++ +++.-.-. ...++++|++|+|+++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEA-FVPVPNLRYLDLSSN-HLHTLDEF-LFSDLQALEVLLLYNN 122 (361)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS
T ss_pred cccCEEECCCCcCCccChhh-ccCCCCCCEEECCCC-cCCcCCHH-HhCCCcCCCEEECCCC
Confidence 44555555555443211111 123455555555553 23321100 1123455555555554
No 114
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.87 E-value=1.9e-05 Score=74.59 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=39.3
Q ss_pred cCccEEEeeC-CCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~-c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
++|+.|+|++ +.+++..-..+ ..+++|++|+|+++. ++...-.. ...+++|++|+++++.- +...-..+ ..+++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~l-~~~~p~~~-~~l~~ 150 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAIPDF-LSQIKTLVTLDFSYNAL-SGTLPPSI-SSLPN 150 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEECCGG-GGGCTTCCEEECCSSEE-ESCCCGGG-GGCTT
T ss_pred CCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCCcCCHH-HhCCCCCCEEeCCCCcc-CCcCChHH-hcCCC
Confidence 5666666664 33332111112 345666666666643 33111111 13456666666666531 11000111 23566
Q ss_pred CcEEeCCCcccc
Q 018291 193 LNDVEGDSWEEL 204 (358)
Q Consensus 193 L~~L~ls~~~~~ 204 (358)
|+.|++++..+.
T Consensus 151 L~~L~L~~N~l~ 162 (313)
T 1ogq_A 151 LVGITFDGNRIS 162 (313)
T ss_dssp CCEEECCSSCCE
T ss_pred CCeEECcCCccc
Confidence 666666665544
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.87 E-value=8.6e-05 Score=66.60 Aligned_cols=131 Identities=8% Similarity=-0.027 Sum_probs=70.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
+.++.|+|+++.|+...-..+...+++|+.|+|+++ +++.-.-.. ..++++|++|+|+++.- +...-.. ...+++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l-~~~~~~~-~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGA-FEGASGVNEILLTSNRL-ENVQHKM-FKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCC-CCCCGGG-GTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHH-hCCCCCCCEEECCCCcc-CccCHhH-hcCCcCC
Confidence 356778888776654311112346777888888775 355322111 23577788888877642 2111111 2346778
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..... .-..+++|+.|+ ..+|+.-.- .....+++|+. +++.+.++
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~L~~N~l 165 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLST------LNLLANPF 165 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCE------EECCSCCE
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCE------EEecCcCC
Confidence 888877766543311 112456666665 223332111 11235677777 88877773
No 116
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=96.84 E-value=9.4e-05 Score=69.25 Aligned_cols=99 Identities=17% Similarity=0.071 Sum_probs=64.1
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.++......+ ..+++|+.|+|+++ .++.-.. . ..+++|++|+++++. ++. +......+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV--D-GTLPVLGTLDLSHNQ-LQS--LPLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC--C-SCCTTCCEEECCSSC-CSS--CCCCTTTCTTC
T ss_pred CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCC-ccCcccC--C-CCCCcCCEEECCCCc-CCc--CchhhccCCCC
Confidence 689999999998765433233 46899999999996 4664322 1 578999999999884 221 11122457889
Q ss_pred cEEeCCCccccchhh-hhcccccccccc
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV 220 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~ 220 (358)
+.|++++..++.... .-.++++|+.|+
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 999888776543211 112344555554
No 117
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.75 E-value=0.0013 Score=61.77 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=57.1
Q ss_pred cCccEEEeeCCCCCh-HHHHHHHHhCCCCCEEeecCCCCCCHH-HHHHHHhCCCCCceEEccCCCCCc-----HHHHHHH
Q 018291 114 SSWEILDISGSDVSD-FGLVKVAQMCKSLKAVDISCCDRITAA-GVSEFLLHCHSLETLRCGGSPRSN-----HAARRCL 186 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD-~gL~~la~~C~~L~~LdLs~C~~ITD~-gl~~La~~Cp~L~~L~L~gC~~It-----D~~l~~L 186 (358)
++|+.|+|+++.|++ .++..+...+++|+.|+|++ ++|++- .+..+. .. +|++|+|.+.+-.+ ..-...+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHH
Confidence 789999999987765 23445556789999999987 567764 343332 23 89999999887432 2334456
Q ss_pred HhhCCCCcEEeC
Q 018291 187 GILKPKLNDVEG 198 (358)
Q Consensus 187 ~~~cp~L~~L~l 198 (358)
...+|+|+.||.
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 667899988874
No 118
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.65 E-value=0.00027 Score=66.58 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=60.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.+++..-..+ ..+++|++|+|+++. ++. +.. ...++|++|+++++. ++...- .....+++|
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~--l~~--~~~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L 149 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNH-LVE--IPP--NLPSSLVELRIHDNR-IRKVPK-GVFSGLRNM 149 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSC-CCS--CCS--SCCTTCCEEECCSSC-CCCCCS-GGGSSCSSC
T ss_pred CCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCc-CCc--cCc--cccccCCEEECCCCc-cCccCH-hHhCCCccC
Confidence 566667776665553322222 346667777776652 431 100 112567777776653 221100 112346777
Q ss_pred cEEeCCCccccchhhhh---cccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTDIG---HGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~i~---~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+.+.+... ... +|+.|+ ...+++ +. ....++|+. +++.++.+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~--~~~~~~L~~------L~l~~n~i 205 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IP--KDLPETLNE------LHLDHNKI 205 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CC--SSSCSSCSC------CBCCSSCC
T ss_pred CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cC--ccccCCCCE------EECCCCcC
Confidence 77777766654432211 111 566665 222332 00 012257777 88888874
No 119
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.63 E-value=0.00018 Score=67.88 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.8
Q ss_pred hcCCCceecCCCCceeecCCC
Q 018291 234 TECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 234 ~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
..+++|+. +++.++.
T Consensus 261 ~~l~~L~~------L~l~~N~ 275 (332)
T 2ft3_A 261 PDLKLLQV------VYLHTNN 275 (332)
T ss_dssp GGCTTCCE------EECCSSC
T ss_pred hcCccCCE------EECCCCC
Confidence 34555555 5555555
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.61 E-value=0.00097 Score=69.62 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=42.6
Q ss_pred CCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCcee
Q 018291 164 CHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV 241 (358)
Q Consensus 164 Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~ 241 (358)
.++|++|+++++. ++. +...+++|+.|+++++.+..- ...+++|+.|+ ..+|+ .+-....++++|+.
T Consensus 220 ~~~L~~L~Ls~N~-L~~-----lp~~l~~L~~L~Ls~N~L~~l---p~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTS-----LPVLPSELKELMVSGNRLTSL---PMLPSGLLSLSVYRNQLT--RLPESLIHLSSETT 288 (622)
T ss_dssp CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSCC---CCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCE
T ss_pred CCCCCEEEccCCc-cCc-----CCCCCCcCcEEECCCCCCCcC---CcccccCcEEeCCCCCCC--cCCHHHhhccccCE
Confidence 4566666666652 221 224556777777766654421 12455666665 33444 12222456788888
Q ss_pred cCCCCceeecCCCCC
Q 018291 242 NPKPSPFGFRGFEVP 256 (358)
Q Consensus 242 ~p~~~~l~l~gC~~s 256 (358)
+++.+++++
T Consensus 289 ------L~L~~N~l~ 297 (622)
T 3g06_A 289 ------VNLEGNPLS 297 (622)
T ss_dssp ------EECCSCCCC
T ss_pred ------EEecCCCCC
Confidence 888888754
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.60 E-value=0.00019 Score=63.12 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=77.3
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|++|+|+++.+++-.- .+...+++|++|+|+++. ++.-.- .....+++|++|+++++. ++...- .....+++|
T Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L 126 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLKELALNTNQ-LQSLPD-GVFDKLTQL 126 (208)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred ccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCCEEEcCCCc-CcccCH-hHhccCCcC
Confidence 789999999997663211 122468999999999974 653211 123468999999999874 331111 112457899
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+.+... .-..+++|+.|+ -..++ ..||.|+. +++.++.+
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~------L~~~~n~~ 177 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRY------LSEWINKH 177 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHH------HHHHHHHC
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHH------HHHHHHhC
Confidence 999998876654322 123466777776 11122 35778887 76666553
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.57 E-value=0.00067 Score=68.33 Aligned_cols=120 Identities=10% Similarity=-0.013 Sum_probs=73.9
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~ 189 (358)
|.+ ++|++|+|++|.|+.-.-. ....+++|++|+|+++. ++.-.-. ...++++|++|++++|. ++.-.-.. ..+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~-l~~l~~~-~f~~L~~L~~L~Ls~N~-l~~l~~~~-~~~ 146 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALG-AFSGLSSLQKLVAVETN-LASLENFP-IGH 146 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC-CCEECGG-GGTTCTTCCEEECTTSC-CCCSTTCC-CTT
T ss_pred HhCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCc-CCCCCHH-HhcCCCCCCEEECCCCc-CCCCChhh-hhc
Confidence 444 7899999999976531111 12468999999999974 6542222 23578999999999884 22110001 246
Q ss_pred CCCCcEEeCCCccccch--hhhhcccccccccc--c---ccCCHHHHHHHHhc
Q 018291 190 KPKLNDVEGDSWEELVN--TDIGHGAQSLRWFV--W---PNIDKDSIEMMSTE 235 (358)
Q Consensus 190 cp~L~~L~ls~~~~~d~--~~i~~~~~sL~~L~--C---~~ITd~~l~~L~~~ 235 (358)
+++|+.|++++..+... ......+++|+.|+ . ..+....+..+...
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 88999999988765432 22234567788776 2 22334455555443
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.45 E-value=0.00017 Score=64.60 Aligned_cols=130 Identities=10% Similarity=-0.046 Sum_probs=69.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.|+.-.-.. ...+++|+.|+|+++ +++.-.-.. ..++++|++|+|+++. ++.-. ..+...+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~-~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGNK-ITELP-KSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTS-STTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhH-hhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCCc-CCccC-HhHccCCCCC
Confidence 46778888887665321111 235678888888875 355321122 2356788888887763 22100 0112346778
Q ss_pred cEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
+.|++++..+..... .-..+++|+.|+ -..|+...- .....+++|+. +++.+.++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~------L~L~~N~~ 164 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQT------MHLAQNPF 164 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCE------EECCSSCE
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCE------EEeCCCCc
Confidence 888877765544321 122455666665 222332111 11235677777 77777763
No 124
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.33 E-value=0.00065 Score=72.69 Aligned_cols=86 Identities=7% Similarity=0.013 Sum_probs=51.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.|+...-.. ...+++|+.|+|++|. ++...-.. ...+++|++|+++++. ++...-..+ ..+++|
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L 364 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNL-LGELYSSN-FYGLPKVAYIDLQKNH-IAIIQDQTF-KFLEKL 364 (844)
T ss_dssp CCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCC-CSCCCSCS-CSSCTTCCEEECCSCC-CCCCCSSCS-CSCCCC
T ss_pred CCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCC-CCccCHHH-hcCCCCCCEEECCCCC-CCccChhhh-cCCCCC
Confidence 68899999998766432222 2467889999998864 44221111 2357888888888773 221110111 347788
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
+.|++++..+.
T Consensus 365 ~~L~Ls~N~l~ 375 (844)
T 3j0a_A 365 QTLDLRDNALT 375 (844)
T ss_dssp CEEEEETCCSC
T ss_pred CEEECCCCCCC
Confidence 88877765543
No 125
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.20 E-value=0.00012 Score=69.01 Aligned_cols=128 Identities=9% Similarity=-0.058 Sum_probs=62.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCC-CCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCH-SLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp-~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
++|++|+|++|.++...-.. ...+++|++|+|+++. ++...-..+. .++ +|++|+++++.- +...-..++ .++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~~L~~L~L~~N~l-~~~~~~~~~-~l~- 198 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRL-TGKIPPTFA-NLN- 198 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEE-EEECCGGGG-GCC-
T ss_pred CCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc-ccCcCCHHHh-hhhhcCcEEECcCCee-eccCChHHh-CCc-
Confidence 67888888887544211111 2357788888888763 4422222233 344 777787777632 111111122 233
Q ss_pred CcEEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 193 LNDVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
|+.|++++..+.+... .-..+++|+.|+ ...++... .. ...+++|+. +++.+|.+
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~-~~~l~~L~~------L~Ls~N~l 256 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNG------LDLRNNRI 256 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GG-CCCCTTCCE------EECCSSCC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec-Cc-ccccCCCCE------EECcCCcc
Confidence 7777776665443211 112345555554 22222100 00 234566666 66666663
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.12 E-value=0.0054 Score=63.98 Aligned_cols=53 Identities=4% Similarity=-0.027 Sum_probs=33.6
Q ss_pred CCCCcEEeCCCccccchhhhhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCC
Q 018291 190 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVP 256 (358)
Q Consensus 190 cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s 256 (358)
.++|+.|+++++.++. +...+++|+.|+ ...|+. |-..+++|+. |++.+|.++
T Consensus 220 ~~~L~~L~Ls~N~L~~---lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~------L~Ls~N~L~ 274 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS---LPVLPSELKELMVSGNRLTS-----LPMLPSGLLS------LSVYRNQLT 274 (622)
T ss_dssp CTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCE------EECCSSCCC
T ss_pred CCCCCEEEccCCccCc---CCCCCCcCcEEECCCCCCCc-----CCcccccCcE------EeCCCCCCC
Confidence 4667777777665543 124556777776 234442 2226788998 999999854
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.10 E-value=0.0036 Score=64.77 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.3
Q ss_pred CCCCceEEccCC
Q 018291 164 CHSLETLRCGGS 175 (358)
Q Consensus 164 Cp~L~~L~L~gC 175 (358)
+++|++|+++++
T Consensus 139 l~~L~~L~Ls~N 150 (571)
T 3cvr_A 139 PALLEYINADNN 150 (571)
T ss_dssp CTTCCEEECCSS
T ss_pred CccccEEeCCCC
Confidence 344444444443
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.00 E-value=0.00048 Score=66.16 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=23.7
Q ss_pred ccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 116 WEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 116 L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++.|+|+++.|++-.-..+...+++|+.|+|+++ +|+.-.-.. ..++++|++|+|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN 98 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC
Confidence 4555555554443221111113455555555553 233211111 123455555555554
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.94 E-value=0.0019 Score=66.49 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=69.1
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHH-HHHHHh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAA-RRCLGI 188 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~-l~~L~~ 188 (358)
|.. ++|+.|+|++|.|+ .+......+++|+.|+|+++ +++. |.. ..++++|++|+|+++. +++.. ...+ .
T Consensus 459 ~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~L~~L~Ls~N~-l~~~~~p~~l-~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPRLQELLLCNNR-LQQSAAIQPL-V 530 (567)
T ss_dssp GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSSC-CCSSSTTGGG-G
T ss_pred ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCCCcEEECCCCC-CCCCCCcHHH-h
Confidence 444 79999999999776 23223357999999999996 5764 443 3579999999999984 33221 2233 3
Q ss_pred hCCCCcEEeCCCccccchh----hhhccccccccc
Q 018291 189 LKPKLNDVEGDSWEELVNT----DIGHGAQSLRWF 219 (358)
Q Consensus 189 ~cp~L~~L~ls~~~~~d~~----~i~~~~~sL~~L 219 (358)
.+++|+.|++++..+.... .+...+++|+.|
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 5899999999988765432 123345666655
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.91 E-value=0.0016 Score=58.25 Aligned_cols=102 Identities=9% Similarity=-0.012 Sum_probs=65.6
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.|+.-.-.. ...+++|++|+|+++. ++...-.. ...+++|++|+|+++.- +...-..+ ..+++|
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L 131 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNR-LENVQHKM-FKGLESLKTLMLRSNRI-TCVGNDSF-IGLSSV 131 (220)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCGGG-GTTCSSCCEEECTTSCC-CCBCTTSS-TTCTTC
T ss_pred CCCCEEECCCCcCCEECHHH-hCCCCCCCEEECCCCc-cCccCHhH-hcCCcCCCEEECCCCcC-CeECHhHc-CCCccC
Confidence 78999999999776432112 2468999999999864 55322222 34789999999998742 21101112 357899
Q ss_pred cEEeCCCccccchhh-hhcccccccccc
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV 220 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~ 220 (358)
+.|++++..+..... .-..+++|+.|+
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 999998876654321 123456777765
No 131
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.90 E-value=0.0022 Score=60.26 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=47.8
Q ss_pred HHHHHhCCCCCEEeecCCCCCCH-HHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEEeCCCccccchhhhh
Q 018291 132 VKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIG 210 (358)
Q Consensus 132 ~~la~~C~~L~~LdLs~C~~ITD-~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L~ls~~~~~d~~~i~ 210 (358)
..+...+|+|+.|+|++. ++++ .++..+...+++|+.|+|++..--+-..+..+.. + +|+.|++++..+
T Consensus 163 ~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~-l-~L~~L~L~~Npl------- 232 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG-L-KLEELWLDGNSL------- 232 (267)
T ss_dssp HHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT-S-CCSEEECTTSTT-------
T ss_pred HHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc-C-CcceEEccCCcC-------
Confidence 334456777777777773 4554 2344444567777777777653222122222221 1 566666655433
Q ss_pred cccccccccccccCCH--HHHHHHHhcCCCcee
Q 018291 211 HGAQSLRWFVWPNIDK--DSIEMMSTECPRIIV 241 (358)
Q Consensus 211 ~~~~sL~~L~C~~ITd--~~l~~L~~~Cp~L~~ 241 (358)
|..+.+ .-...+...+|+|+.
T Consensus 233 ----------~~~~~~~~~y~~~il~~~P~L~~ 255 (267)
T 3rw6_A 233 ----------CDTFRDQSTYISAIRERFPKLLR 255 (267)
T ss_dssp ----------GGGCSSHHHHHHHHHHHCTTCCE
T ss_pred ----------ccccCcchhHHHHHHHHCcccCe
Confidence 222221 234456677888887
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.81 E-value=0.0012 Score=69.93 Aligned_cols=103 Identities=11% Similarity=-0.043 Sum_probs=63.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHH-HHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR-RCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l-~~L~~~cp~ 192 (358)
+.|+.|+|++|.+++ +..-...+++|++|+|+++ .++ .|-.-...+++|++|+|+++. ++ .+ ..+ ..+++
T Consensus 224 ~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~-~~l~~ 294 (727)
T 4b8c_D 224 QLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAEL-GSCFQ 294 (727)
T ss_dssp CCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSG-GGGTT
T ss_pred CCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhh-cCCCC
Confidence 778899999885542 1111126888999999986 465 222222568889999999875 33 11 112 35788
Q ss_pred CcEEeCCCccccchhhhhcccccccccc--cccCC
Q 018291 193 LNDVEGDSWEELVNTDIGHGAQSLRWFV--WPNID 225 (358)
Q Consensus 193 L~~L~ls~~~~~d~~~i~~~~~sL~~L~--C~~IT 225 (358)
|+.|+++++.+..-...-..+++|+.|+ ...|+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 9999888776542111123456777776 33454
No 133
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.73 E-value=0.0017 Score=67.15 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=68.7
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
+|+.|+|++|.|+. +.. .+++|+.|+|+++. ++. | ...+++|++|+|++|. ++. +-.+ .++|+
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~--l---p~~l~~L~~L~Ls~N~-L~~--lp~l---~~~L~ 183 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTM--L---PELPTSLEVLSVRNNQ-LTF--LPEL---PESLE 183 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSSC-CSC--CCCC---CTTCC
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCc--C---CCcCCCcCEEECCCCC-CCC--cchh---hCCCC
Confidence 66677777765543 211 57788888888863 553 2 2267889999999885 222 1112 27899
Q ss_pred EEeCCCccccchhhhhcccccc-------cccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCCCc
Q 018291 195 DVEGDSWEELVNTDIGHGAQSL-------RWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPR 257 (358)
Q Consensus 195 ~L~ls~~~~~d~~~i~~~~~sL-------~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~s~ 257 (358)
.|++++..++.-..+. .+| +.|+ ...|+. +..-...+++|+. +++.+++++.
T Consensus 184 ~L~Ls~N~L~~lp~~~---~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~------L~L~~N~l~~ 244 (571)
T 3cvr_A 184 ALDVSTNLLESLPAVP---VRNHHSEETEIFFRCRENRITH--IPENILSLDPTCT------IILEDNPLSS 244 (571)
T ss_dssp EEECCSSCCSSCCCCC-----------CCEEEECCSSCCCC--CCGGGGGSCTTEE------EECCSSSCCH
T ss_pred EEECcCCCCCchhhHH---HhhhcccccceEEecCCCccee--cCHHHhcCCCCCE------EEeeCCcCCC
Confidence 9999887665322222 155 6666 334442 2222234888888 9999988543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.71 E-value=0.0013 Score=57.82 Aligned_cols=85 Identities=16% Similarity=0.038 Sum_probs=51.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.|+.-. .....+++|+.|+|+++ .|+.-.-.. ..++++|++|+|+++. ++.-.-..+ ..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYNR-LRCIPPRTF-DGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTC
T ss_pred CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCCc-cCEeCHHHh-CCCCCC
Confidence 57888888888665321 22356788888888885 355322112 2367888888888774 221111112 246788
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
+.|++++..+.
T Consensus 105 ~~L~L~~N~l~ 115 (193)
T 2wfh_A 105 RLLSLHGNDIS 115 (193)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 88888776554
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.64 E-value=0.0087 Score=59.51 Aligned_cols=10 Identities=30% Similarity=0.079 Sum_probs=4.7
Q ss_pred CccEEEeeCC
Q 018291 115 SWEILDISGS 124 (358)
Q Consensus 115 ~L~~L~Ls~c 124 (358)
+|+.|+|+++
T Consensus 92 ~L~~L~l~~n 101 (454)
T 1jl5_A 92 HLESLVASCN 101 (454)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEEccCC
Confidence 4444444444
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.57 E-value=0.0013 Score=58.71 Aligned_cols=102 Identities=14% Similarity=0.022 Sum_probs=64.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.|+.-.-.. ...+++|++|+|+++ +++.-.- .+..++++|++|+|+++. ++......+ ..+++|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L 130 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGN-KITELPK-SLFEGLFSLQLLLLNANK-INCLRVDAF-QDLHNL 130 (220)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTC
T ss_pred CCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCC-cCCccCH-hHccCCCCCCEEECCCCC-CCEeCHHHc-CCCCCC
Confidence 78999999999776432222 246799999999986 4652111 123468999999999874 222111122 357899
Q ss_pred cEEeCCCccccchhh-hhcccccccccc
Q 018291 194 NDVEGDSWEELVNTD-IGHGAQSLRWFV 220 (358)
Q Consensus 194 ~~L~ls~~~~~d~~~-i~~~~~sL~~L~ 220 (358)
+.|++++..+..... .-..+++|+.|+
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 999998876654322 123456677665
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.44 E-value=0.0022 Score=57.48 Aligned_cols=125 Identities=9% Similarity=-0.023 Sum_probs=80.9
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
+++.++.++.+++.-- ....++|+.|+|+++. ++...-.. ..++++|++|+|+++.- +.-.- .....+++|+
T Consensus 20 s~~~v~c~~~~l~~ip----~~~~~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~N~l-~~i~~-~~~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVP----AGIPTNAQILYLHDNQ-ITKLEPGV-FDSLINLKELYLGSNQL-GALPV-GVFDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCCSSCC----SCCCTTCSEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCC-CCCCT-TTTTTCTTCC
T ss_pred eCCEeEccCCCcCccC----CCCCCCCCEEEcCCCc-cCccCHHH-hhCccCCcEEECCCCCC-CCcCh-hhcccCCCcC
Confidence 4678888876443211 0124899999999964 65422122 34689999999998852 21100 1124689999
Q ss_pred EEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 195 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 195 ~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
.|++++..+..... ....+++|+.|+ ..+|+. +..-...+++|+. |++.++.+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~------L~L~~N~l 147 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTH------LALDQNQL 147 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSE------EECCSSCC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCE------EECCCCcC
Confidence 99999887654322 124677888887 445552 2222378899999 99999984
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.37 E-value=0.0016 Score=55.58 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=40.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.++...- .....+++|++|+|+++ +++.-.- .....+++|++|+++++. ++...- .....+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENK-LQSLPN-GVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCC-ccccCH-HHhhCCccc
Confidence 466677777765442111 11234566777777665 3442111 112356667777766653 221000 011235666
Q ss_pred cEEeCCCccc
Q 018291 194 NDVEGDSWEE 203 (358)
Q Consensus 194 ~~L~ls~~~~ 203 (358)
+.|++++..+
T Consensus 103 ~~L~l~~N~l 112 (177)
T 2o6r_A 103 KELALDTNQL 112 (177)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCcc
Confidence 6666655443
No 139
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.30 E-value=0.018 Score=57.17 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=29.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 176 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~ 176 (358)
++|+.|++++|.++. +.. ...+++|++|++++|. ++. +....++|++|++++|.
T Consensus 215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNL-LKT-----LPDLPPSLEALNVRDNY 268 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSS-----CCSCCTTCCEEECCSSC
T ss_pred CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCc-CCc-----ccccccccCEEECCCCc
Confidence 467777777775541 222 2356777777777653 432 11234566666666653
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.25 E-value=0.00089 Score=58.50 Aligned_cols=87 Identities=7% Similarity=0.040 Sum_probs=46.6
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
+++.|+|+++.|+...-..+...+++|++|+|+++ +++...-.. ..++++|++|+|+++. ++...-..+ ..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGENK-IKEISNKMF-LGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSCC-CCEECSSSS-TTCTTCC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCCc-CCccCHHHh-cCCCCCC
Confidence 67777777775543221112245677777777775 354321111 2356777777777763 221110111 2357777
Q ss_pred EEeCCCccccc
Q 018291 195 DVEGDSWEELV 205 (358)
Q Consensus 195 ~L~ls~~~~~d 205 (358)
.|++++..+..
T Consensus 106 ~L~L~~N~l~~ 116 (192)
T 1w8a_A 106 TLNLYDNQISC 116 (192)
T ss_dssp EEECCSSCCCE
T ss_pred EEECCCCcCCe
Confidence 77777665543
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.23 E-value=0.0018 Score=55.30 Aligned_cols=126 Identities=6% Similarity=-0.076 Sum_probs=79.2
Q ss_pred CccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCc
Q 018291 115 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN 194 (358)
Q Consensus 115 ~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~ 194 (358)
.++.|++++++++.-. ....++|++|+|+++. ++.-.- .....+++|++|+++++. ++.-.- .....+++|+
T Consensus 8 ~~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP----TGIPSSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCSSCC----TTCCTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred CCCEEEecCCCCccCC----CCCCCCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCCc-ceEeCh-hHccCCCccC
Confidence 4678888887655321 1234799999999964 653211 123568999999999884 331110 1123689999
Q ss_pred EEeCCCccccchhh-hhcccccccccc--cccCCHHHHHHHHhcCCCceecCCCCceeecCCCC
Q 018291 195 DVEGDSWEELVNTD-IGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEV 255 (358)
Q Consensus 195 ~L~ls~~~~~d~~~-i~~~~~sL~~L~--C~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~~ 255 (358)
.|++++..++.... .-..+++|+.|+ ...|+.-. ..+...+++|+. +++.++++
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~------L~l~~N~~ 136 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQK------IWLHTNPW 136 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE------EECCSSCB
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCE------EEecCCCe
Confidence 99999877654322 123567788776 33444211 122356889999 99999885
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.01 Score=55.85 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=7.1
Q ss_pred cCccEEEeeCC
Q 018291 114 SSWEILDISGS 124 (358)
Q Consensus 114 ~~L~~L~Ls~c 124 (358)
++|+.|+|+++
T Consensus 124 ~~L~~l~l~~n 134 (329)
T 3sb4_A 124 DNLKICQIRKK 134 (329)
T ss_dssp TTCCEEEBCCS
T ss_pred cccceEEcCCC
Confidence 56666666655
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.06 E-value=0.0037 Score=66.20 Aligned_cols=84 Identities=13% Similarity=-0.003 Sum_probs=57.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|++|.|+ .+..-...+++|+.|+|+++. ++ .|-.-...+++|++|+|+++. ++. +-.-...+++|
T Consensus 247 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L 318 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQLKYFYFFDNM-VTT--LPWEFGNLCNL 318 (727)
T ss_dssp CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTTCSEEECCSSC-CCC--CCSSTTSCTTC
T ss_pred CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCCCCEEECCCCC-CCc--cChhhhcCCCc
Confidence 78999999999776 222222568999999999864 66 232223468899999999883 331 11112357899
Q ss_pred cEEeCCCccccc
Q 018291 194 NDVEGDSWEELV 205 (358)
Q Consensus 194 ~~L~ls~~~~~d 205 (358)
+.|++++..+..
T Consensus 319 ~~L~L~~N~l~~ 330 (727)
T 4b8c_D 319 QFLGVEGNPLEK 330 (727)
T ss_dssp CCEECTTSCCCS
T ss_pred cEEeCCCCccCC
Confidence 999998877654
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.67 E-value=0.0046 Score=58.27 Aligned_cols=27 Identities=7% Similarity=0.306 Sum_probs=20.9
Q ss_pred ccCCHHHHHHHHhcCCCceecCCCCceeecCCC
Q 018291 222 PNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 222 ~~ITd~~l~~L~~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
..+.......+..+|++|+. +++.++.
T Consensus 211 ~~l~~~~~~~l~~~~~~L~~------l~L~~n~ 237 (329)
T 3sb4_A 211 GKLDNADFKLIRDYMPNLVS------LDISKTN 237 (329)
T ss_dssp ECCCHHHHHHHHHHCTTCCE------EECTTBC
T ss_pred eeecHHHHHHHHHhcCCCeE------EECCCCC
Confidence 34667777888888999999 8887764
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.72 E-value=0.0041 Score=54.20 Aligned_cols=86 Identities=10% Similarity=0.038 Sum_probs=57.4
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.|+...-.. ...+++|++|+|+++ +++...-.. ..+.++|++|+|+++. ++...-..+ ..+++|
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L 128 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDNQ-ISCVMPGSF-EHLNSL 128 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSSC-CCEECTTSS-TTCTTC
T ss_pred CCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCCc-CCeeCHHHh-hcCCCC
Confidence 78999999999776432112 246899999999996 466432222 2368999999999884 322111112 357899
Q ss_pred cEEeCCCcccc
Q 018291 194 NDVEGDSWEEL 204 (358)
Q Consensus 194 ~~L~ls~~~~~ 204 (358)
+.|++++....
T Consensus 129 ~~L~L~~N~l~ 139 (192)
T 1w8a_A 129 TSLNLASNPFN 139 (192)
T ss_dssp CEEECTTCCBC
T ss_pred CEEEeCCCCcc
Confidence 99999876543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.53 E-value=0.0097 Score=50.89 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=27.7
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 175 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC 175 (358)
++++.|+|+++.|+.-.-.. ...+++|+.|+|+++ +++.-.- .+...+++|++|+|++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCC
Confidence 45666666666443211111 124566666666664 3442110 11134566666666655
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.05 E-value=0.012 Score=51.51 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=57.8
Q ss_pred hhc-cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhh
Q 018291 111 LAD-SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL 189 (358)
Q Consensus 111 l~~-~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~ 189 (358)
|.. ++|+.|+|+++.|+.-.-.. ...+++|++|+|+++ +++.-.-.. ...+++|++|+|+++. ++.-.- .....
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N~-l~~~~~-~~~~~ 124 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGND-ISVVPE-GAFND 124 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSSC-CCBCCT-TTTTT
T ss_pred hhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCCC-CCeeCh-hhhhc
Confidence 344 89999999999776432212 246899999999996 465432222 2468999999999874 221100 11235
Q ss_pred CCCCcEEeCCCccc
Q 018291 190 KPKLNDVEGDSWEE 203 (358)
Q Consensus 190 cp~L~~L~ls~~~~ 203 (358)
+++|+.|++++...
T Consensus 125 l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 125 LSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CccccEEEeCCCCe
Confidence 78899999876544
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=92.55 E-value=0.022 Score=48.97 Aligned_cols=84 Identities=11% Similarity=-0.002 Sum_probs=42.2
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++|+.|+|+++.|+.-.- .....+++|+.|+|+++ +++.--- .+...+++|++|+|+++. ++.-. ......+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDNH-LKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCCc-cceeC-HHHhccccCC
Confidence 567777777775542211 11235677777777774 4543110 112356777777777653 22100 0111235667
Q ss_pred cEEeCCCcc
Q 018291 194 NDVEGDSWE 202 (358)
Q Consensus 194 ~~L~ls~~~ 202 (358)
+.|++++..
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 777665543
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=90.42 E-value=0.0034 Score=59.84 Aligned_cols=15 Identities=0% Similarity=0.058 Sum_probs=11.5
Q ss_pred hcCCCceecCCCCceeecCCC
Q 018291 234 TECPRIIVNPKPSPFGFRGFE 254 (358)
Q Consensus 234 ~~Cp~L~~~p~~~~l~l~gC~ 254 (358)
..+++|+. +++.++.
T Consensus 199 ~~l~~L~~------LdLs~N~ 213 (350)
T 4ay9_X 199 HGASGPVI------LDISRTR 213 (350)
T ss_dssp TTEECCSE------EECTTSC
T ss_pred ccCcccch------hhcCCCC
Confidence 46677888 8888887
No 150
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=89.56 E-value=0.0047 Score=58.83 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=41.8
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL 193 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L 193 (358)
++++.|+|+++.|+.-.-. ....+++|++|+|+++.-.+.-.- ....++++|.++...++..++.-.-. .-..+++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCch-hhhhcccc
Confidence 4677888888766521100 124577888888887642221000 01134566665444434333211000 11346677
Q ss_pred cEEeCCCcc
Q 018291 194 NDVEGDSWE 202 (358)
Q Consensus 194 ~~L~ls~~~ 202 (358)
+.|++++..
T Consensus 107 ~~L~l~~n~ 115 (350)
T 4ay9_X 107 QYLLISNTG 115 (350)
T ss_dssp CEEEEEEEC
T ss_pred ccccccccc
Confidence 777665543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=86.45 E-value=0.13 Score=44.10 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=43.5
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS 178 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~I 178 (358)
++|+.|+|+++.|+.-- ..+...+++|+.|+|+++ +++.--- .....+++|++|+|++.+-.
T Consensus 57 ~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 57 VNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSCBC
T ss_pred cCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCCCcc
Confidence 78999999999766411 112356899999999985 4652111 12346899999999988643
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=86.35 E-value=0.074 Score=49.90 Aligned_cols=85 Identities=9% Similarity=-0.047 Sum_probs=49.1
Q ss_pred cCccEEEeeC-CCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~-c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~ 192 (358)
.+|+.|+|++ +.|+.-.-.. ...+++|+.|+|+++ +++.---. ...++++|++|+|++.. ++.-. ..+....+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~~~- 104 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFNA-LESLS-WKTVQGLS- 104 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSSC-CSCCC-STTTCSCC-
T ss_pred CCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCCc-cceeC-HHHcccCC-
Confidence 6788999986 5665321111 245788999999885 46542111 22468889999988764 22100 01112223
Q ss_pred CcEEeCCCcccc
Q 018291 193 LNDVEGDSWEEL 204 (358)
Q Consensus 193 L~~L~ls~~~~~ 204 (358)
|+.|++.+....
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 888888765543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=86.16 E-value=0.098 Score=44.48 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=42.1
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR 177 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ 177 (358)
++|+.|+|+++.|+.-.- .+...+++|++|+|++. +++.-.- .....+++|++|+|++.+-
T Consensus 54 ~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCCC
Confidence 789999999997663211 12256899999999995 4653111 1234678899999987653
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=76.96 E-value=0.29 Score=47.89 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=14.2
Q ss_pred cCccEEEeeCC--CCChHHHHHHHHhCCCCCEEeec
Q 018291 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDIS 147 (358)
Q Consensus 114 ~~L~~L~Ls~c--~ItD~gL~~la~~C~~L~~LdLs 147 (358)
.+|+.|.|... .|.+.++ ..|++|+.++|.
T Consensus 203 ~~L~~l~lp~~l~~I~~~aF----~~~~~L~~l~l~ 234 (401)
T 4fdw_A 203 AGIEEVLLPVTLKEIGSQAF----LKTSQLKTIEIP 234 (401)
T ss_dssp CCCSEEECCTTCCEECTTTT----TTCTTCCCEECC
T ss_pred cccCEEEeCCchheehhhHh----hCCCCCCEEecC
Confidence 45555555543 2333322 345555555554
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=73.32 E-value=0.52 Score=44.00 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=37.9
Q ss_pred EEEeeCC-CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCCCCCcHHHHHHHHhhCCCCcEE
Q 018291 118 ILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV 196 (358)
Q Consensus 118 ~L~Ls~c-~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC~~ItD~~l~~L~~~cp~L~~L 196 (358)
.+++++. .++. +.. ...+++|+.|+|+++++++.---.. ..++++|++|+|+++. ++...-.. ...+++|+.|
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~-~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSG-LRFVAPDA-FHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSC-CCEECTTG-GGSCSCCCEE
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCc-cceeCHHH-hcCCcCCCEE
Confidence 3455554 4443 222 2345566677776544554321111 2356667777776653 22110001 1246666666
Q ss_pred eCCCccc
Q 018291 197 EGDSWEE 203 (358)
Q Consensus 197 ~ls~~~~ 203 (358)
++++..+
T Consensus 86 ~l~~N~l 92 (347)
T 2ifg_A 86 NLSFNAL 92 (347)
T ss_dssp ECCSSCC
T ss_pred eCCCCcc
Confidence 6666544
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=72.62 E-value=0.46 Score=46.38 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=35.1
Q ss_pred cCccEEEeeCC--CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC-CCCcHHHHHHHHhhC
Q 018291 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c--~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC-~~ItD~~l~~L~~~c 190 (358)
.+|+.|.|... .|.+.++ ..|++|+.++|... +++.-+-.++ .|.+|+.+.+... ..|.+. + -.+|
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF----~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~l~~I~~~---a-F~~~ 225 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIF----YYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVTLKEIGSQ---A-FLKT 225 (401)
T ss_dssp CCCCEEECCTTCCEECSSTT----TTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTTCCEECTT---T-TTTC
T ss_pred CCceEEEeCCCccEehHHHh----hCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCchheehhh---H-hhCC
Confidence 45666666653 3444433 45777777777642 2222111111 1456666666422 122222 1 1246
Q ss_pred CCCcEEeCC
Q 018291 191 PKLNDVEGD 199 (358)
Q Consensus 191 p~L~~L~ls 199 (358)
++|+.+++.
T Consensus 226 ~~L~~l~l~ 234 (401)
T 4fdw_A 226 SQLKTIEIP 234 (401)
T ss_dssp TTCCCEECC
T ss_pred CCCCEEecC
Confidence 666666654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=59.90 E-value=2.6 Score=40.17 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=65.2
Q ss_pred cCccEEEeeCC--CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccC-CCCCcHHHHHHHHhhC
Q 018291 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGG-SPRSNHAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c--~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~g-C~~ItD~~l~~L~~~c 190 (358)
..|+.+.+.+. .|.+..+ ..|++|+.+++.. .++.-|=.+ -.+|.+|+.+++.. ...|.+.+ + ..|
T Consensus 265 ~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~v~~I~~~a---F-~~C 333 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPEGITQILDDA---F-AGC 333 (394)
T ss_dssp SSCCEEECCTTCCEECTTTT----TTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCTTCCEECTTT---T-TTC
T ss_pred ccccEEecccccceecCccc----ccccccccccCCC--cccccCcee-ecCCCCcCEEEeCCcccEehHhH---h-hCC
Confidence 67888888775 4555433 4789999999863 233222122 24789999999863 33444432 2 358
Q ss_pred CCCcEEeCCCc-cccchhhhhcccccccccccccCCHHHHHHHHhcCCCcee
Q 018291 191 PKLNDVEGDSW-EELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIV 241 (358)
Q Consensus 191 p~L~~L~ls~~-~~~d~~~i~~~~~sL~~L~C~~ITd~~l~~L~~~Cp~L~~ 241 (358)
.+|+.+.+... ..+.... -.+|.+|+.+.-++ +.....+ ...|..|+.
T Consensus 334 ~~L~~i~ip~sv~~I~~~a-F~~C~~L~~i~~~~-~~~~~~~-~~~~~~L~~ 382 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESA-FSNCTALNNIEYSG-SRSQWNA-ISTDSGLQN 382 (394)
T ss_dssp TTCCEEEECTTCCBCCGGG-GTTCTTCCEEEESS-CHHHHHT-CBCCCCC--
T ss_pred CCCCEEEECcccCEEhHhH-hhCCCCCCEEEECC-ceeehhh-hhccCCCCE
Confidence 89999887432 3333333 24677888776332 1111222 246666666
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=52.95 E-value=2.2 Score=40.70 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=61.0
Q ss_pred cCccEEEeeCCCCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccC-CCCCcHHHHHHHHhhCCC
Q 018291 114 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGG-SPRSNHAARRCLGILKPK 192 (358)
Q Consensus 114 ~~L~~L~Ls~c~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~g-C~~ItD~~l~~L~~~cp~ 192 (358)
..++.+.+....+.+.. ...|.+|+.+.+.. .++.-|=.+ -.+|.+|+.+++.. ...|.+.+ + .+|.+
T Consensus 276 ~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~v~~I~~~a---F-~~c~~ 344 (394)
T 4fs7_A 276 SGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPYLVEEIGKRS---F-RGCTS 344 (394)
T ss_dssp TTCCEEEECSSEECTTT----TTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCTTCCEECTTT---T-TTCTT
T ss_pred cccceeccCceeecccc----cccccccccccccc--ccceechhh-hcCCCCCCEEEeCCcccEEhHHh---c-cCCCC
Confidence 45555555544344332 35788888888864 233211111 24688898888853 23343332 1 35888
Q ss_pred CcEEeCCCc-cccchhhhhccccccccccccc-CCHHHHHHHHhcCCCcee
Q 018291 193 LNDVEGDSW-EELVNTDIGHGAQSLRWFVWPN-IDKDSIEMMSTECPRIIV 241 (358)
Q Consensus 193 L~~L~ls~~-~~~d~~~i~~~~~sL~~L~C~~-ITd~~l~~L~~~Cp~L~~ 241 (358)
|+.+.+... ..+.... -.+|.+|+.+..+. ++.- ..--.+|++|+.
T Consensus 345 L~~i~lp~~l~~I~~~a-F~~C~~L~~i~lp~~~~~~--~~~F~~c~~L~~ 392 (394)
T 4fs7_A 345 LSNINFPLSLRKIGANA-FQGCINLKKVELPKRLEQY--RYDFEDTTKFKW 392 (394)
T ss_dssp CCEECCCTTCCEECTTT-BTTCTTCCEEEEEGGGGGG--GGGBCTTCEEEE
T ss_pred CCEEEECccccEehHHH-hhCCCCCCEEEECCCCEEh--hheecCCCCCcE
Confidence 888887543 2222222 24677788776332 2221 112356777765
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=37.42 E-value=7.9 Score=36.29 Aligned_cols=95 Identities=19% Similarity=0.106 Sum_probs=44.9
Q ss_pred cCccEEEeeCC--CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC-CCCcHHHHHHHHhhC
Q 018291 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILK 190 (358)
Q Consensus 114 ~~L~~L~Ls~c--~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC-~~ItD~~l~~L~~~c 190 (358)
.+|+.+.+... .+.+..+ ..|..|+.+++... ++.-|-.+ ..+|.+|+.+.+..- ..+.+. .-..|
T Consensus 217 ~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~~~a-F~~~~~l~~i~l~~~i~~i~~~----aF~~c 285 (379)
T 4h09_A 217 KNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKN--VTSIGSFL-LQNCTALKTLNFYAKVKTVPYL----LCSGC 285 (379)
T ss_dssp SSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTT--CCEECTTT-TTTCTTCCEEEECCCCSEECTT----TTTTC
T ss_pred cccceeeeccceeEEccccc----cCCccceEEEcCCC--ccEeCccc-cceeehhccccccccceecccc----ccccc
Confidence 45666666554 3333322 35777777777542 33222111 235667777766432 111111 11346
Q ss_pred CCCcEEeCCCccc--cchhhhhcccccccccc
Q 018291 191 PKLNDVEGDSWEE--LVNTDIGHGAQSLRWFV 220 (358)
Q Consensus 191 p~L~~L~ls~~~~--~d~~~i~~~~~sL~~L~ 220 (358)
++|+.+.+....+ +.+.. -.+|.+|+.+.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~a-F~~c~~L~~i~ 316 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRV-FMDCVKLSSVT 316 (379)
T ss_dssp TTCCEEEECCTTCCEECTTT-TTTCTTCCEEE
T ss_pred cccccccccccccceehhhh-hcCCCCCCEEE
Confidence 6777766644322 22222 23455666555
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=36.46 E-value=14 Score=34.92 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=57.4
Q ss_pred cCccEEEeeCC--CCChHHHHHHHHhCCCCCEEeecC-CCCCCHHHHHHHHhCCCCCceEEccC-CCCCcHHHHHHHHhh
Q 018291 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISC-CDRITAAGVSEFLLHCHSLETLRCGG-SPRSNHAARRCLGIL 189 (358)
Q Consensus 114 ~~L~~L~Ls~c--~ItD~gL~~la~~C~~L~~LdLs~-C~~ITD~gl~~La~~Cp~L~~L~L~g-C~~ItD~~l~~L~~~ 189 (358)
++|+.+.+... .|.+..+ ..|.+|+.++|.. ...|.+.+. .+|.+|+.+.+.. ...|.+.+ + .+
T Consensus 288 ~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~~a---F-~~ 355 (394)
T 4gt6_A 288 PALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPESA---F-SN 355 (394)
T ss_dssp TTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCGGG---G-TT
T ss_pred cccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhHhH---h-hC
Confidence 78999999775 4666544 5799999999964 223333322 4799999999963 34455442 2 36
Q ss_pred CCCCcEEeCCCccccchhhhhcccccccccc
Q 018291 190 KPKLNDVEGDSWEELVNTDIGHGAQSLRWFV 220 (358)
Q Consensus 190 cp~L~~L~ls~~~~~d~~~i~~~~~sL~~L~ 220 (358)
|.+|+.+++.+....-.. ...+.+|+.+.
T Consensus 356 C~~L~~i~~~~~~~~~~~--~~~~~~L~~i~ 384 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQWNA--ISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEEESSCHHHHHT--CBCCCCC----
T ss_pred CCCCCEEEECCceeehhh--hhccCCCCEEE
Confidence 999999998764322111 23345555544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=32.62 E-value=6.2 Score=37.03 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=61.2
Q ss_pred cCccEEEeeCC--CCChHHHHHHHHhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC--CCCcHHHHHHHHhh
Q 018291 114 SSWEILDISGS--DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS--PRSNHAARRCLGIL 189 (358)
Q Consensus 114 ~~L~~L~Ls~c--~ItD~gL~~la~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC--~~ItD~~l~~L~~~ 189 (358)
..|+.+.+... .|.+..+ ..|.+|+.+++.. .++.-+-.+ -.+|++|+.+.+.+. ..|.+.+ -.+
T Consensus 240 ~~L~~i~lp~~v~~I~~~aF----~~~~~l~~i~l~~--~i~~i~~~a-F~~c~~L~~i~l~~~~i~~I~~~a----F~~ 308 (379)
T 4h09_A 240 KALDEIAIPKNVTSIGSFLL----QNCTALKTLNFYA--KVKTVPYLL-CSGCSNLTKVVMDNSAIETLEPRV----FMD 308 (379)
T ss_dssp SSCCEEEECTTCCEECTTTT----TTCTTCCEEEECC--CCSEECTTT-TTTCTTCCEEEECCTTCCEECTTT----TTT
T ss_pred ccceEEEcCCCccEeCcccc----ceeehhccccccc--cceeccccc-cccccccccccccccccceehhhh----hcC
Confidence 67888988775 4555433 5789999999864 344333222 357999999999754 3454442 246
Q ss_pred CCCCcEEeCCC-ccccchhhhhcccccccccccc
Q 018291 190 KPKLNDVEGDS-WEELVNTDIGHGAQSLRWFVWP 222 (358)
Q Consensus 190 cp~L~~L~ls~-~~~~d~~~i~~~~~sL~~L~C~ 222 (358)
|.+|+.+.+.. ...+.... -.+|.+|+.+..|
T Consensus 309 c~~L~~i~lp~~l~~I~~~a-F~~C~~L~~i~ip 341 (379)
T 4h09_A 309 CVKLSSVTLPTALKTIQVYA-FKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEECCTTCCEECTTT-TTTCTTCCCCCCC
T ss_pred CCCCCEEEcCccccEEHHHH-hhCCCCCCEEEEC
Confidence 89999998853 23333332 2467778877643
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=32.47 E-value=5.6 Score=37.84 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=57.2
Q ss_pred HhCCCCCEEeecCCCCCCHHHHHHHHhCCCCCceEEccCC-CCCcHHHHHHHHhhCCCCcEEeCCCc-cccchhhhhccc
Q 018291 136 QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPKLNDVEGDSW-EELVNTDIGHGA 213 (358)
Q Consensus 136 ~~C~~L~~LdLs~C~~ITD~gl~~La~~Cp~L~~L~L~gC-~~ItD~~l~~L~~~cp~L~~L~ls~~-~~~d~~~i~~~~ 213 (358)
..|..|+.+.+... .+.+. ....|.+|+.+.+... ..|.+.+ -..|.+|+.+++... ..+.... -.+|
T Consensus 273 ~~~~~l~~~~~~~~-~i~~~----~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a-F~~c 342 (394)
T 4fs7_A 273 YNCSGLKKVIYGSV-IVPEK----TFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRS-FRGC 342 (394)
T ss_dssp TTCTTCCEEEECSS-EECTT----TTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT-TTTC
T ss_pred ccccccceeccCce-eeccc----cccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHh-ccCC
Confidence 46889998888653 23332 2357999999998642 3344332 236899999998542 2233332 2467
Q ss_pred ccccccccc-cCCHHHHHHHHhcCCCcee
Q 018291 214 QSLRWFVWP-NIDKDSIEMMSTECPRIIV 241 (358)
Q Consensus 214 ~sL~~L~C~-~ITd~~l~~L~~~Cp~L~~ 241 (358)
.+|+.+.-+ +|+.-+-.+ -.+|++|+.
T Consensus 343 ~~L~~i~lp~~l~~I~~~a-F~~C~~L~~ 370 (394)
T 4fs7_A 343 TSLSNINFPLSLRKIGANA-FQGCINLKK 370 (394)
T ss_dssp TTCCEECCCTTCCEECTTT-BTTCTTCCE
T ss_pred CCCCEEEECccccEehHHH-hhCCCCCCE
Confidence 888887632 233211112 258999998
Done!