BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018293
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 136 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 185
+I+A+ + V ++D +G+CN L L H + ++WN + LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 186 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
D +V + K+ +I +A VE +AW E F +D + +D
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
R+ +T+ + S + AH V +S+NP +LATGS DK V LWDL N +
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340
+ K +F V +S + +LA G+ +L +WD LS G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 173
H GL+WN L SAS D V +WD+ AG H+ V+ VAW
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 230
+ + S + D+ +++ D R +T S V A+V L+++P++E D
Sbjct: 238 HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
T+ +D+R K T +H + + ++P +LA+ TD+ + +WDL
Sbjct: 298 KTVALWDLRNLK--------LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 330
S K G S +ED P + GG K+
Sbjct: 350 S------------KIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHS 177
H+ V +AW+ ++ S + D+++ IWD + K + ++ HT +V +++N +S
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 178 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
IL +GS D++V + D R + H+ F+ + ++ + W PH E S D +
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHT-FE-SHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 235 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
Query: 290 LSNN 293
++ N
Sbjct: 406 MAEN 409
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 136 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 185
+I+A+ + V ++D +G+CN L L H + ++WN + LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 186 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
D +V + K+ +I +A VE +AW E F +D + +D
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
R+ +T+ + S + AH V +S+NP +LATGS DK V LWDL N +
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340
+ K +F V +S + +LA G+ +L +WD LS G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 173
H GL+WN L SAS D V +WD+ AG H+ V+ VAW
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 230
+ + S + D+ + + D R +T S V A+V L+++P++E D
Sbjct: 238 HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
T+ +D+R K T +H + + ++P +LA+ TD+ + +WDL
Sbjct: 298 KTVALWDLRNLK--------LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 330
S K G S +ED P + GG K+
Sbjct: 350 S------------KIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHS 177
H+ V +AW+ ++ S + D+++ IWD + K + ++ HT +V +++N +S
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 178 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
IL +GS D++V + D R + H+ F+ + ++ + W PH E S D +
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHT-FE-SHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 235 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D+ + D + + F H + S+NP P ++ + S D + ++W
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Query: 290 LSNN 293
+ N
Sbjct: 406 XAEN 409
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 154 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 204
+G+C +L L H + ++WN + LLS S D ++ + K+ R+
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264
A VE +AW E F +D + +D R ++ + + S T+ AH V
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 281
Query: 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
+S+NP +LATGS DK V LWDL N + + S +F V +S + +LA
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 340
Query: 325 GSKGKLEIWDTLSDAG 340
G+ +L +WD LS G
Sbjct: 341 GTDRRLHVWD-LSKIG 355
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 173
H GL+WN L SAS D + +WD+ A HT V+ VAW
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 230
+ + S + D+ +++ D R + S V A+V L+++P++E D
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
T+ +D+R K S +H + + ++P +LA+ TD+ + +WDL
Sbjct: 300 KTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 330
S K G S +ED P + GG K+
Sbjct: 352 S------------KIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHS 177
HT V +AW+ ++ S + D+++ IWD K + T++ HT +V +++N +S
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 178 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLH 347
Query: 235 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
Query: 290 LSNN 293
++ N
Sbjct: 408 MAEN 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 154 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 204
+G+C +L L H + ++WN + LLS S D ++ + K+ R+
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264
A VE +AW E F +D + +D R ++ + + S T+ AH V
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 283
Query: 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
+S+NP +LATGS DK V LWDL N + + S +F V +S + +LA
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 342
Query: 325 GSKGKLEIWDTLSDAG 340
G+ +L +WD LS G
Sbjct: 343 GTDRRLHVWD-LSKIG 357
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 173
H GL+WN L SAS D + +WD+ A HT V+ VAW
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 241
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 230
+ + S + D+ +++ D R + S V A+V L+++P++E D
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
T+ +D+R K S +H + + ++P +LA+ TD+ + +WDL
Sbjct: 302 KTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 330
S K G S +ED P + GG K+
Sbjct: 354 S------------KIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHS 177
HT V +AW+ ++ S + D+++ IWD K + T++ HT +V +++N +S
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 178 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLH 349
Query: 235 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 350 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
Query: 290 LSNN 293
++ N
Sbjct: 410 MAEN 413
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 154 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 204
+G+C +L L H + ++WN + LLS S D ++ + K+ R+
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264
A VE +AW E F +D + +D R ++ + + S T+ AH V
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 285
Query: 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
+S+NP +LATGS DK V LWDL N + + S +F V +S + +LA
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 344
Query: 325 GSKGKLEIWD 334
G+ +L +WD
Sbjct: 345 GTDRRLHVWD 354
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 173
H GL+WN L SAS D + +WD+ A HT V+ VAW
Sbjct: 184 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 243
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 230
+ + S + D+ +++ D R + S V A+V L+++P++E D
Sbjct: 244 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
T+ +D+R K S +H + + ++P +LA+ TD+ + +WDL
Sbjct: 304 KTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 330
S K G S +ED P + GG K+
Sbjct: 356 S------------KIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHS 177
HT V +AW+ ++ S + D+++ IWD K + T++ HT +V +++N +S
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 178 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLH 351
Query: 235 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 352 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
Query: 290 LSNN 293
++ N
Sbjct: 412 MAEN 415
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 137 ILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS- 185
I+A+ + V ++D +G+CN L L H + ++WN + LLS S
Sbjct: 139 IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD 198
Query: 186 ------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
+D S V K+ ++ A VE ++W E F +D + +D R
Sbjct: 199 DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR 258
Query: 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
+ + + + S ++ AH V +S+NP +LATGS DK V LWDL N + +
Sbjct: 259 S------NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LH 311
Query: 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
S +F V +S + +LA G+ +L +WD
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----GK---CNLTLEHHTDKVQAVAW 173
H GL+WN L SAS D + +WD++A GK HT V+ V+W
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 235
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 230
+ + S + D+ +++ D R + S +V A+V L+++P++E D
Sbjct: 236 HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
T+ +D+R K + +H + + ++P +LA+ TD+ + +WDL
Sbjct: 296 KTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 330
S K G S +ED P + GG K+
Sbjct: 348 S------------KIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 13/184 (7%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHS 177
HT V ++W+ ++ S + D+++ IWD + K + +++ HT +V +++N +S
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 178 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 235 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 290 LSNN 293
++ N
Sbjct: 404 MAEN 407
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HT SVL L +++ ++ + S+D V++WDV G+ TL HH + V + +N+ +
Sbjct: 172 HTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GM 225
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
+++ S DRS+ + D T + + ++ + V + D TIK ++ T
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
+ TL+ H + + + Y L+ +GS+D ++LWD+ +C+
Sbjct: 286 C---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG--ACLRV 331
Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
V + F D+ +++ G GK+++WD ++
Sbjct: 332 LEGHEELVRCIRF--DNKRIVS-GAYDGKIKVWDLVA 365
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 70 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 112 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 169
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 170 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 224
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 225 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 100
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 151
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 152 PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 207
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 208 PNGKYILA-ATLDNTLKLWD 226
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 79
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 80 SSDSNLLVSASDDK-TLKIWDVSS 102
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 63 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 120
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 121 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 175
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 176 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 228
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 105 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 162
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 163 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 217
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 218 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 93
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 94 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 144
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 145 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 200
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 201 PNGKYILA-ATLDNTLKLWD 219
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 16 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 72
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 73 SSDSNLLVSASDDK-TLKIWDVSS 95
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 60 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 117
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 118 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 172
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 173 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 225
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 102 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 159
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 160 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 214
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 215 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 90
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 91 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 141
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 142 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 197
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 198 PNGKYILA-ATLDNTLKLWD 216
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 13 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 69
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 70 SSDSNLLVSASDDK-TLKIWDVSS 92
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 64 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 106 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 163
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 164 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 218
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 219 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 94
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 145
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 146 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 201
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 202 PNGKYILA-ATLDNTLKLWD 220
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 73
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 74 SSDSNLLVSASDDK-TLKIWDVSS 96
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 81 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 138
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 139 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 193
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 194 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 246
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 123 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 180
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 181 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 235
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 236 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 111
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 112 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 162
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 163 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 218
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 219 PNGKYILA-ATLDNTLKLWD 237
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
F +K P + FTL H KAV ++ ++P LA+ S DK++K+W + +
Sbjct: 16 FQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKF 74
Query: 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
S + K G + VA+S DS +++ K L+IWD S
Sbjct: 75 EKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 113
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 109 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 166
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 167 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 221
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 222 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 148
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 70 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 112 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 169
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 170 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 224
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 225 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 100
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 151
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 152 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 207
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 208 PNGKYILA-ATLDNTLKLWD 226
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
G +K P + FTL H KAV ++ ++P LA+ S DK++K+W + +
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK 62
Query: 295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
S + K G + VA+S DS +++ K L+IWD S
Sbjct: 63 FEKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 102
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 109 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 166
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 167 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 221
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 222 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LA++SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 148
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 109 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 166
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 167 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 221
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 222 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 148
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 64 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 106 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 163
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 164 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 218
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 219 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 94
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 145
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 146 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 201
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 202 PNGKYILA-ATLDNTLKLWD 220
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 73
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 74 SSDSNLLVSASDDK-TLKIWDVSS 96
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 69 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 126
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 127 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 181
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 182 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 234
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 111 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 168
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 169 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 223
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 224 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 99
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 100 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 150
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 151 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 206
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 207 PNGKYILA-ATLDNTLKLWD 225
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 22 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 78
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 79 SSDSNLLVSASDDK-TLKIWDVSS 101
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 65 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 122
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 123 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 177
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 178 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 230
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 107 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 164
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 165 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 219
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 220 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 95
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 96 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 146
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 147 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 202
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 203 PNGKYILA-ATLDNTLKLWD 221
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 18 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 74
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 75 SSDSNLLVSASDDK-TLKIWDVSS 97
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 70 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 112 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 169
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 170 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 224
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 225 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 100
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 151
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 152 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 207
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 208 PNGKYILA-ATLDNTLKLWD 226
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 79
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 80 SSDSNLLVSASDDK-TLKIWDVSS 102
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 88 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 145
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 146 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 200
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 201 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 253
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 130 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 187
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 188 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 242
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 243 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 118
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 119 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 169
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 170 PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 225
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 226 PNGKYILA-ATLDNTLKLWD 244
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 241 AKSDPDSTSQQSS-----------FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
A+ P S++ QS FTL H KAV ++ ++P LA+ S DK++K+W
Sbjct: 17 AQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWG 75
Query: 290 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
+ + S + K G + VA+S DS +++ K L+IWD S
Sbjct: 76 AYDGKFEKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 120
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 86 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 143
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 144 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 198
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 199 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 251
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 128 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 185
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 235
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 186 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 240
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 241 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 116
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 117 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 167
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 168 PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 223
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 224 PNGKYILA-ATLDNTLKLWD 242
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 241 AKSDPDSTSQQSS-----------FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
A+ P S++ QS FTL H KAV ++ ++P LA+ S DK++K+W
Sbjct: 15 AQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWG 73
Query: 290 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
+ + S + K G + VA+S DS +++ K L+IWD S
Sbjct: 74 AYDGKFEKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 118
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 256
S+ K + + + + +VS D +++ +D++T TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---------TL 148
Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 314
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 57/200 (28%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSAS------------ 87
Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 257
+D T+K +D+ + K TL
Sbjct: 88 -------------------------------DDKTLKIWDVSSGKCLK---------TLK 107
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317
H V ++NP NL+ +GS D+ V++WD+ C+ + + V +V F+ D
Sbjct: 108 GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGM--CLKTLPAHSDPVSAVHFNRDG 164
Query: 318 PFVLAIGGSKGKLEIWDTLS 337
+++ G IWDT S
Sbjct: 165 SLIVS-SSYDGLCRIWDTAS 183
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 314 SEDSPFVLAIGGSKGKLEIWDTLS 337
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 127 GLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 185
G W+ + R NI+ S S D+ +K+W+ G+C TL HT V+ + H + ++SGS
Sbjct: 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGS 216
Query: 186 FDRSVVMKD----------------ARISTHSGFKWAVAA-DVESLAWDPHAE---HSF- 224
D ++ + D R + G + A D WDP E H+
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 225 -----VVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268
V SL+ D +I+ +D+ T T QS S
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS------------LTSG 324
Query: 269 NPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
L N+L +G+ D VK+WD+ Q + N AV + F+++ FV+
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVIT-SSDD 381
Query: 328 GKLEIWDTLSDAGISN 343
G +++WD + I N
Sbjct: 382 GTVKLWDLKTGEFIRN 397
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 25/200 (12%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + S S D +K+W GKC TL HT V + + I++SGS DR++ + +A
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNA 186
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSF 254
+ + V + H VVS D T++ +DI T Q
Sbjct: 187 ETGECIHTLYGHTSTVRCM----HLHEKRVVSGSRDATLRVWDIETG---------QCLH 233
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
L H AV + Y+ + +G+ D MVK+WD +C+ + V+S+ F
Sbjct: 234 VLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQF- 287
Query: 315 EDSPFVLAIGGSKGKLEIWD 334
D V++ G + +WD
Sbjct: 288 -DGIHVVS-GSLDTSIRVWD 305
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 124
G + GS++ +I +WD++ + + H + G H
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCI--HTLTG-------------------------HQSL 321
Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
G+ NIL S +AD VKIWD+ G+C TL+ AV + +++
Sbjct: 322 TSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 378
Query: 185 SFDRSVVMKDAR 196
S D +V + D +
Sbjct: 379 SDDGTVKLWDLK 390
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 60/290 (20%)
Query: 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 124
G F+A G+ + I IWD I+ + +IL G H
Sbjct: 135 GKFLATGAEDRLIRIWD---IENRKIVMILQG------------------------HEQD 167
Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
+ L + + L S S D+ V+IWD+ G+C+LTL D V VA + + + +G
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAG 225
Query: 185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDG----------TI 233
S DR+V + D + +GF D E+ + H + + VV DG ++
Sbjct: 226 SLDRAVRVWD----SETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 234 KGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
K ++++ A + DS + S T H V +++ +L +GS D+ V WD
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDK 339
Query: 291 SNNQPSCI--ASRNPKAGAVFSVAFSEDSPF-----VLAIGGSKGKLEIW 333
+ P + RN +V SVA + S V A G K IW
Sbjct: 340 KSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 225 VVSLEDGTI--KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 282
V + DG++ + D A DP++ + SS + + ++VC ++P LATG+ D
Sbjct: 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC---FSP-DGKFLATGAED 144
Query: 283 KMVKLWDLSNNQ 294
+++++WD+ N +
Sbjct: 145 RLIRIWDIENRK 156
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 61/250 (24%)
Query: 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 124
GN +A S + ++ +W++D DE + +L HT
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS------------------------HTQD 152
Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILL 182
V + W+ + +LASAS D VK++ C TLE H V ++A++ S Q L
Sbjct: 153 VKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLA 210
Query: 183 SGSFDRSVVMKDAR-------------------ISTHSGFKWAVAADVESLAWDPHAEHS 223
S S DR+V + I T SGF + + +AW +
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH---SRTIYDIAW-CQLTGA 266
Query: 224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLAT 278
+ D I+ F + DP+S QQ +F+L AH + V +++NP P LLA+
Sbjct: 267 LATACGDDAIRVF-----QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 279 GSTDKMVKLW 288
S D V W
Sbjct: 322 CSDDGEVAFW 331
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSP 178
H +V +AW+ N LASAS D IW +C TLE H ++V++VAW S
Sbjct: 60 HQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSG 117
Query: 179 QILLSGSFDRSVVMKD----------ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 228
+L + S D+SV + + + +++H+ DV+ + W P E S
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-------QDVKHVVWHPSQELLASASY 170
Query: 229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 288
+D T+K + R + D + TL H+ V +++++P LA+ S D+ V++W
Sbjct: 171 DD-TVKLY--REEEDDWVCCA-----TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIW 221
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGK--CNLTL-EHHTDKVQAVAWNHHSPQILLSG 184
LAWN +LAS D++++IW C L E H V+ VAW+ L S
Sbjct: 22 LAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASA 79
Query: 185 SFDRSVVMKDAR------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
SFD + + ++T G + +V+S+AW P + D ++ +++
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSG-NLLATCSRDKSVWVWEV 134
Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
+ + L++H + V + ++P LLA+ S D VKL+ + C
Sbjct: 135 ------DEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCC 187
Query: 299 ASRNPKAGAVFSVAF 313
A+ V+S+AF
Sbjct: 188 ATLEGHESTVWSLAF 202
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 65/255 (25%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
+++ SAS D +K+WD G TL+ HTD VQ ++++H S ++L S S D ++ + D
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 179
Query: 196 R----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA---------- 241
+ I T G +V S++ P+ +H V + D TIK ++++T
Sbjct: 180 QGFECIRTMHGHD----HNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 242 ------KSDPDST-----------------SQQSSFTLHAHDKAVCTISYNPLVPN---- 274
+ + D T +++ L H V IS+ P
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 275 ---------------LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 319
L +GS DK +K+WD+S C+ + V V F F
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF 352
Query: 320 VLAIGGSKGKLEIWD 334
+L+ K L +WD
Sbjct: 353 ILSCADDK-TLRVWD 366
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ---------------- 179
++AS S D+ V++W VA +C L H V+ ++W S
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 180 ---ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKG 235
LLSGS D+++ M D +ST V D H+ F++S +D T++
Sbjct: 307 PGPFLLSGSRDKTIKMWD--VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+D + +++ TL+AH+ V ++ ++ P + TGS D+ VK+W+
Sbjct: 365 WDYK---------NKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 408
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
+AW KE N LA ++ +V++WDV K + H+ +V +++WN + IL SGS
Sbjct: 73 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 128
Query: 188 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
+ D R++ H SG + +V L W P H L G +
Sbjct: 129 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 178
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 300
S P T H AV +++ P N+LAT G++D+ +++W++ + +C+++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 236
Query: 301 RNPKAGAVFSVAFS-EDSPFVLAIGGSKGKLEIW 333
+ + V S+ +S + G ++ +L IW
Sbjct: 237 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 269
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
+AW KE N LA ++ +V++WDV K + H+ +V +++WN + IL SGS
Sbjct: 164 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 219
Query: 188 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
+ D R++ H SG + +V L W P H L G +
Sbjct: 220 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 269
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 300
S P T H AV +++ P N+LAT G++D+ +++W++ + +C+++
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 327
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
+AW KE N LA ++ +V++WDV K + H+ +V +++WN + IL SGS
Sbjct: 153 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 208
Query: 188 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
+ D R++ H SG + +V L W P H L G +
Sbjct: 209 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 258
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 300
S P T H AV +++ P N+LAT G++D+ +++W++ + +C+++
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 316
Query: 301 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 333
+ + V S+ +S + G ++ +L IW
Sbjct: 317 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 349
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 130 WNKEF-RNILASASADKQVKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILL 182
W+ +F + ILA+ S D+++K+ V+ + TL H +++VAW H+ +L
Sbjct: 18 WSFDFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLA 74
Query: 183 SGSFDRSVVMKDARISTHSGFKWAVAA-------DVESLAWDPHAEHSFVVSLEDGTIKG 235
+GSFD +V + S F+ + A +V+ +AW + S +
Sbjct: 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS---- 130
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
+ ++D + L H + V + ++P LLA+ S D V++W ++
Sbjct: 131 --VWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187
Query: 296 SCIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSD 338
C+A N G V+S F + + F L G + +W + D
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 173
HT VL +AW N++AS S D V +W++ G L TLE HT +V VAW
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 226
+ + +LLS D +++ D A V +L D H + + V
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 227 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 278
S D ++ + R A+ D + + + + T ++ +
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 279 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
+++ V LWD + +P + + +G + F D+ V G + ++ S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 338 DAGISNRFSKYS 349
+A + S +S
Sbjct: 300 EAPFLHYLSMFS 311
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Query: 183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
G+F + K R+ + A V +AW PH ++ ED T+ ++I
Sbjct: 56 GGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI---- 111
Query: 243 SDPDS----TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
PD ++ TL H K V ++++P N+L + D ++ +WD+
Sbjct: 112 --PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLT 169
Query: 299 ASRNPKAGAVFSVAFSEDSPFV 320
+ ++SV +S D +
Sbjct: 170 LGPDVHPDTIYSVDWSRDGALI 191
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 173
HT VL +AW N++AS S D V +W++ G L TLE HT +V VAW
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 226
+ + +LLS D +++ D A V +L D H + + V
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 227 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 278
S D ++ + R A+ D + + + + T ++ +
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 279 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
+++ V LWD + +P + + +G + F D+ V G + ++ S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 338 DAGISNRFSKYS 349
+A + S +S
Sbjct: 300 EAPFLHYLSMFS 311
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 48/254 (18%)
Query: 52 MAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD----VIDEVQPHVILGGIDEEXXXXXXX 107
+AW CP D N +A GS + + +W++ V+ +P + L G
Sbjct: 87 IAW--CPHND----NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG----------- 129
Query: 108 XXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHT 165
HT V +AW+ +N+L SA D + +WDV G LTL + H
Sbjct: 130 -------------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 225
D + +V W+ I S +D R+ K V A+ + H+
Sbjct: 177 DTIYSVDWSRDGALICTS--------CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228
Query: 226 VSLEDGTIKGFDIRTAKSDP--DSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGST 281
VS GF + + D+ + +L D + V ++P + G
Sbjct: 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288
Query: 282 DKMVKLWDLSNNQP 295
D ++ +++++ P
Sbjct: 289 DSSIRYFEITSEAP 302
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Query: 183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
G+F + K R+ + A V +AW PH ++ ED T+ ++I
Sbjct: 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI---- 111
Query: 243 SDPDS----TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
PD ++ TL H K V ++++P N+L + D ++ +WD+
Sbjct: 112 --PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169
Query: 299 ASRNPKAGAVFSVAFSEDSPFV 320
+ ++SV +S D +
Sbjct: 170 LGPDVHPDTIYSVDWSRDGALI 191
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H+ SV G+A++ + + I ASAS DK VK+W+ G+ TL H+ V VA+ Q
Sbjct: 220 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQT 276
Query: 181 LLSGSFDRSVVMKDAR------ISTHSGFKWAVA--ADVESLA----------WDPHAEH 222
+ S S D++V + + ++ HS W VA D +++A W+ + +H
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Query: 223 SFVVSLEDGTIKGF----DIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPL 271
++ ++ G D +T S D + + Q TL H +V ++++P
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP- 395
Query: 272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 331
+A+ S DK VKLW N + + + +V+ VAFS D + + K ++
Sbjct: 396 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVK 451
Query: 332 IWD 334
+W+
Sbjct: 452 LWN 454
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-- 178
H+ SV G+A++ + + I ASAS DK VK+W+ G+ TL H+ V VA+ SP
Sbjct: 15 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF---SPDG 69
Query: 179 QILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
Q + S S D++V + + + T +G ++ V +A+ P + + + +D T+K
Sbjct: 70 QTIASASDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQ-TIASASDDKTVKL 124
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
++ + Q TL H +V ++++P +A+ S DK VKLW N
Sbjct: 125 WN----------RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW---NRNG 170
Query: 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
+ + + +V+ VAFS D + + K +++W+
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK-TVKLWN 208
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 26/174 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-- 178
H+ SV G+A++ + + I ASAS DK VK+W+ G+ TL H+ V+ VA+ SP
Sbjct: 425 HSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF---SPDG 479
Query: 179 QILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
Q + S S D++V + + + T +G ++ V +A+ P + + + +D T+K
Sbjct: 480 QTIASASDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQ-TIASASDDKTVKL 534
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
++ + Q TL H +V ++++P +A+ S+DK VKLW+
Sbjct: 535 WN----------RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H+ V GLAW + LAS D V+IWD + T +H V+AVAW +
Sbjct: 216 HSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 181 LLS--GSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
L + G+ D+ + AR++T + V SL W PH++ E +
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSK-------EIMSTH 322
Query: 235 GF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLW 288
GF D + S+ + AHD V Y+ L P+ +L+T ++D+ +K W
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL---YSALSPDGRILSTAASDENLKFW 376
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQI---LLSGSFDRSVV 191
N++A A ++ V +W+ +G + E + V +V W+H + L +G D V
Sbjct: 105 NVVAVA-LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 192 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 251
++ T +G + A V L+W+ H S G I D+R A
Sbjct: 164 ESQTKLRTMAGHQ----ARVGCLSWNRHVLSS---GSRSGAIHHHDVRIA--------NH 208
Query: 252 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 311
TL H VC +++ L A+G D +V++WD ++ P ++ AV +V
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQL-ASGGNDNVVQIWDARSSIPKF--TKTNHNAAVKAV 265
Query: 312 AFSEDSPFVLAIGGSK--GKLEIWDTLSDAGIS 342
A+ +LA GG ++ W+ + A ++
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 37/230 (16%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIW-----DVAAGKCNLTLEHHTDKVQAVAWNH 175
HTD V +A + +I+ SAS DK + +W D A G L H+ V+ V +
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
Q LSGS+D + + W +AA V + + H + V+ ++
Sbjct: 441 DG-QFALSGSWDGELRL------------WDLAAGVSTRRFVGHTKDVLSVAF---SLDN 484
Query: 236 FDIRTAKSDPD----STSQQSSFTL----HAHDKAVCTISYNP--LVPNLLATGSTDKMV 285
I +A D +T + +T+ H V + ++P L P ++ + S DK V
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV 543
Query: 286 KLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
K+W+LSN + S +A G V +VA S D A GG G + +WD
Sbjct: 544 KVWNLSNCKLRSTLAGHT---GYVSTVAVSPDGSLC-ASGGKDGVVLLWD 589
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV----VMKDA 195
S S D ++++WD+AAG HT V +VA++ + QI +S S DR++ + +
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGEC 505
Query: 196 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQ 250
+ + G + W V + + P+ +VS D T+K +++ K
Sbjct: 506 KYTISEGGEGHRDW-----VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS----- 555
Query: 251 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 310
TL H V T++ +P +L A+G D +V LWDL+ + N + +
Sbjct: 556 ----TLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS---VIHA 607
Query: 311 VAFSEDSPFVLAIGGSKGKLEIWD 334
+ FS + ++ A ++ ++IWD
Sbjct: 608 LCFSPNRYWLCA--ATEHGIKIWD 629
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H D VL A++ + + +A+ SADK+VKIWD A GK T + H+++V + + S +
Sbjct: 663 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 181 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
LL +GS D + + D + V + P E S DGT++ +D+R
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 780
Query: 240 TA 241
+A
Sbjct: 781 SA 782
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HTD+V ++++ + I AS ADK ++++ G+ L ++ H D+V A++
Sbjct: 621 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 674
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
D+ I+T S AD + WD
Sbjct: 675 ------------DDSYIATCS-------ADKKVKIWD----------------------- 692
Query: 241 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
S + + T H + V C N LLATGS D +KLWDL NQ C
Sbjct: 693 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 742
Query: 300 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 337
RN G SV SP +LA + G L +WD S
Sbjct: 743 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)
Query: 230 DGTIKGFDIRTAKSDPDSTSQQSS------------FTLHAHDKAVCTISYNPLVPN--- 274
DGT+K +++ T + + D T Q + F+ + DK S++ L P
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 275 -----------------LLATGSTDKMVKLWDLSNNQ--PSC--IASRNPKA---GAVFS 310
LLATG + +++W++S+ Q SC I+ A G V
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1190
Query: 311 VAFSEDSPFVLAIGG 325
V FS DS +++ GG
Sbjct: 1191 VCFSPDSKTLVSAGG 1205
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H D VL A++ + + +A+ SADK+VKIWD A GK T + H+++V + + S +
Sbjct: 656 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 181 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
LL +GS D + + D + V + P E S DGT++ +D+R
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 773
Query: 240 TA 241
+A
Sbjct: 774 SA 775
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HTD+V ++++ + I AS ADK ++++ G+ L ++ H D+V A++
Sbjct: 614 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 667
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
D+ I+T S AD + WD
Sbjct: 668 ------------DDSYIATCS-------ADKKVKIWD----------------------- 685
Query: 241 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
S + + T H + V C N LLATGS D +KLWDL NQ C
Sbjct: 686 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 735
Query: 300 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 337
RN G SV SP +LA + G L +WD S
Sbjct: 736 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)
Query: 230 DGTIKGFDIRTAKSDPDSTSQQSS------------FTLHAHDKAVCTISYNPLVPN--- 274
DGT+K +++ T + + D T Q + F+ + DK S++ L P
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Query: 275 -----------------LLATGSTDKMVKLWDLSNNQ--PSC--IASRNPKA---GAVFS 310
LLATG + +++W++S+ Q SC I+ A G V
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183
Query: 311 VAFSEDSPFVLAIGG 325
V FS DS +++ GG
Sbjct: 1184 VCFSPDSKTLVSAGG 1198
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 296
I+ K D D+++ + S + AHD ++ I + +P ++A+ S DK VKLW+ +Q
Sbjct: 33 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 92
Query: 297 CIASR-------NPKAGAVFSVAFS-EDSPFVLAIGGSKGKLEIWDTL 336
C R N G+++SV F+ LA G+ G L ++D L
Sbjct: 93 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 121 HTDSVLGLAW-NKEFRNILASASADKQVKIWD 151
H S++ + W + E+ I+ASAS DK VK+W+
Sbjct: 54 HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 296
I+ K D D+++ + S + AHD ++ I + +P ++A+ S DK VKLW+ +Q
Sbjct: 35 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 297 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 336
C R N G+++SV F+ LA G+ G L ++D L
Sbjct: 95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 121 HTDSVLGLAW-NKEFRNILASASADKQVKIWD 151
H S++ + W + E+ I+ASAS DK VK+W+
Sbjct: 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 296
I+ K D D+++ + S + AHD ++ I + +P ++A+ S DK VKLW+ +Q
Sbjct: 35 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 297 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 336
C R N G+++SV F+ LA G+ G L ++D L
Sbjct: 95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 121 HTDSVLGLAW-NKEFRNILASASADKQVKIWD 151
H S++ + W + E+ I+ASAS DK VK+W+
Sbjct: 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SP- 178
H SV + W + S+S DK +K+WD N + ++HH SP
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT-----NTLQTADVFNFEETVYSHHMSPV 152
Query: 179 ----QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
++ G+ V + D + + S ++ +++W P ++ + D +K
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 235 GFDIRTAK---------SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285
+D+R A + S + +S+ T AH+ V + + +LL G TD +
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANT--AHNGKVNGLCFTSDGLHLLTVG-TDNRM 269
Query: 286 KLWDLSNNQPSCI----ASRNPKAGAVFSVAFSEDSPFVLAIGGS 326
+LW+ SN + + + N K G F+V+ S FV GS
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 157 CNLTLEH---HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 213
C++ +H H V+ V W H + S SFD+++ + D ADV +
Sbjct: 88 CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------LQTADVFN 139
Query: 214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-PDSTSQQSSFTLHAHDKAVCTISYNPLV 272
++ H VS + + R K D S S L H + + +S++P
Sbjct: 140 FEETVYSHHMSPVSTKHCLV-AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198
Query: 273 PNLLATGSTDKMVKLWDLSNNQPSCI--------------ASRNPKAGAVFSVAFSEDSP 318
+LAT S D VKLWD+ I ++ G V + F+ D
Sbjct: 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258
Query: 319 FVLAIGGSKGKLEIWDT 335
+L + G+ ++ +W++
Sbjct: 259 HLLTV-GTDNRMRLWNS 274
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 179 QILLSGSFDRSVVMKDARISTHSGFKWAVAA-------------DVESLAWDPHAEHSFV 225
+ +LSG D +V+ D S+ + A VE++ W PH F
Sbjct: 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116
Query: 226 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDK 283
S D T+K +D T ++ +++ ++ H +P+ L+A G+
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM----------SPVSTKHCLVAVGTRGP 166
Query: 284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343
V+L DL + S I + + + +V++S ++LA + ++++WD +G
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQE--ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Query: 344 RFSKYSKPKKPQSV 357
+++ KK Q+V
Sbjct: 225 TLDQHNG-KKSQAV 237
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H+ V L W E +N + SAS D ++ +W+ + ++ H V A+ + +
Sbjct: 65 HSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 181 L------------LSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVS 227
LS DR M +R+ T H G+ S + P E +
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-------ASSCQYVPDQETRLITG 176
Query: 228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 287
D T +D+ T + S+ S H V ++S N L N+ +GS D V+L
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPS----GHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
WDL + + + + G + SV F D G G ++D
Sbjct: 233 WDLRITSRA-VRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFD 277
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV-AADVES----------- 213
+ AW+H +L+SG+ +V DA ST S + W++ AAD E
Sbjct: 14 RTATFAWSHDKIPLLVSGTVSGTV---DANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 214 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271
L W H +L++G+++ + A + +S ++ S+ H +V T+ +N
Sbjct: 71 NDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-----HSSSVKTVKFNAK 124
Query: 272 VPNLLATGSTDKMVKLWDL-------SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
N+LA+G + + +WD+ SN P V S+A+++ V A
Sbjct: 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 325 GSKGKLEIWD 334
GS IWD
Sbjct: 185 GSSNFASIWD 194
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT-----------DKVQ 169
H+ SV + +N + N+LAS + ++ IWD+ KC + ++T D+V
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM--NKCTESPSNYTPLTPGQSMSSVDEVI 169
Query: 170 AVAWNHHSPQILLS-GSFD---------RSVVMKDARISTHSGFKWAVAADVESLAWDPH 219
++AWN + S GS + + V+ + S +SG K ++ + W P
Sbjct: 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV----VEWHPK 225
Query: 220 AEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 276
+ D +I +D+R A + + +Q H K + ++ + +LL
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ-------GHQKGILSLDWCHQDEHLL 278
Query: 277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGA-VFSVAFSEDSPFVLAIGGSKGKLEI 332
+ D V LW N + + S+ P G F F+ ++P + A K+E+
Sbjct: 279 LSSGRDNTVLLW---NPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 20/181 (11%)
Query: 123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHH 176
D V+ LAWN+ ++ ASA + IWD+ A K + L + + ++ V W+
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 177 SPQILLSGSF---DRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSFVVSLEDG 231
+ + + + D S+++ D R + + SL W EH + S D
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
T+ + +P+S Q S F A + P P+L A S D +++ L
Sbjct: 286 TVLLW-------NPESAEQLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336
Query: 292 N 292
N
Sbjct: 337 N 337
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
K + D+ + TL H V ++++P L+ + +A+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 35/188 (18%)
Query: 134 FRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSV 190
+ +A+ S+DK +KI++V L TL H V V W H IL S S+D V
Sbjct: 20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 191 VM------KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAK 242
++ + ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 80 MIWKEENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPMLLVASSDGKVSVVEFK--- 131
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDL 290
S + AH V + S+ P TG D +VK+W
Sbjct: 132 ----ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 291 SNNQPSCI 298
+++ + +
Sbjct: 188 NSDAQTYV 195
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
NI+ S S D + +WDVA KC L HTD++ + ++H + +S S D ++ + D
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDL 339
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
+ + + + ++ V + DG+I+G+ D+ F+
Sbjct: 340 E---NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKM 284
H + + T Y + N+L +GS ++
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 23/214 (10%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + + + DK ++++D K L L H V A+ + H IL+SGS DR+V + D
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI 190
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPD-------- 246
+ + + V L + ++V+ D T+ + + S PD
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 247 ---STSQQSSF---TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
T +++ + L H +V T+S + N++ +GS D + +WD++ Q C+
Sbjct: 251 LVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVA--QMKCLYI 305
Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
+ ++S + + ++ + IWD
Sbjct: 306 LSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWD 338
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 244 DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 303
+P Q++ TL H +V T N + TG+ DKM++++D N + + +
Sbjct: 107 NPKFVPQRT--TLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKK--FLLQLSG 160
Query: 304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
G V+++ ++ +L G + + +WD
Sbjct: 161 HDGGVWALKYAHGG--ILVSGSTDRTVRVWD 189
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
NI+ S S D + +WDVA KC L HTD++ + ++H + +S S D ++ + D
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC-ISASXDTTIRIWDL 339
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
+ + + + ++ V + DG+I+G+ D+ F+
Sbjct: 340 E---NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKM 284
H + + T Y + N+L +GS ++
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 36/199 (18%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDA 195
IL S S D+ V++WD+ G C E H V+ + + + + +++GS D ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--- 231
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
W + ES D EH + + T + +P
Sbjct: 232 ---------WKLPK--ESSVPDHGEEHDYPLVFH----------TPEENPYFVG-----V 265
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
L H +V T+S + N++ +GS D + +WD++ Q C+ + ++S +
Sbjct: 266 LRGHXASVRTVSGH---GNIVVSGSYDNTLIVWDVA--QXKCLYILSGHTDRIYSTIYDH 320
Query: 316 DSPFVLAIGGSKGKLEIWD 334
+ ++ + IWD
Sbjct: 321 ERKRCIS-ASXDTTIRIWD 338
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
K + D+ + TL H V ++++P L+ + LA+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 35/188 (18%)
Query: 134 FRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSV 190
+ LA+ S+DK +KI++V L TL H V V W H IL S S+D V
Sbjct: 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 191 VM------KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAK 242
++ + ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 80 LIWKEENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFK--- 131
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDL 290
S + AH V + S+ P TG D +VK+W
Sbjct: 132 ----ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 291 SNNQPSCI 298
+++ + +
Sbjct: 188 NSDAQTYV 195
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
SVV +T A A V S +W P EH+ G D ++
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 186
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
K + D+ + TL H V ++++P L+ + LA+ S D+ +W N Q
Sbjct: 187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
+ + K V A S VLA+ G K+ +W
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 138 LASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVM-- 192
LA+ S+DK +KI++V L TL H V V W H IL S S+D V++
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 193 ----KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAKSDPD 246
+ ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 86 EENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFK------- 133
Query: 247 STSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDLSNNQ 294
S + AH V + S+ P TG D +VK+W +++
Sbjct: 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193
Query: 295 PSCI 298
+ +
Sbjct: 194 QTYV 197
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199
S S D +K+WD+A + H +V VA + H + LS S D +++ D R
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 200 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 257
+ A SLAW P FV E+GT+ D + S +
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK---------STSCVLSSA 254
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
H + V + ++P LA+ S D + + D S ++
Sbjct: 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
K + D+ + TL H V ++++P L+ + A+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 175
H V +A +F +++ SAS DK + +W + + N L H+ V V +
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
Q LSGS+D ++ + D T + DV S+A+ V D TIK
Sbjct: 97 DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 154
Query: 236 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 292
++ T +T+ +H + V + ++P N ++ + DK+VK+W+L+N
Sbjct: 155 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 293 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
C N G + +V S D A GG G+ +WD
Sbjct: 205 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 243
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA---- 195
S S D +++WD+ G HT V +VA++ + QI +SGS D+++ + +
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVC 161
Query: 196 --RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQS 252
+ S +W V + + P++ + +VS D +K +++ K +
Sbjct: 162 KYTVQDESHSEW-----VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---- 212
Query: 253 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
H + T++ +P +L A+G D LWDL+ +
Sbjct: 213 -----GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 175
H V +A +F +++ SAS DK + +W + + N L H+ V V +
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
Q LSGS+D ++ + D T + DV S+A+ V D TIK
Sbjct: 74 DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 131
Query: 236 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 292
++ T +T+ +H + V + ++P N ++ + DK+VK+W+L+N
Sbjct: 132 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 293 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
C N G + +V S D A GG G+ +WD
Sbjct: 182 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 220
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA---- 195
S S D +++WD+ G HT V +VA++ + QI +SGS D+++ + +
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVC 138
Query: 196 --RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQS 252
+ S +W V + + P++ + +VS D +K +++ K +
Sbjct: 139 KYTVQDESHSEW-----VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---- 189
Query: 253 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
H + T++ +P +L A+G D LWDL+ +
Sbjct: 190 -----GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK 225
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N SAS D +++W++ G+C HT V +VA++ + QI+ G + V
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSF 254
H+ + A V + + P + +VS D +K +D+ T + D
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-------- 191
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
L H V +++ +P +L A+ D + +LWDL+ +
Sbjct: 192 -LKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGE 229
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196
++ S D VK+WD+A G+ L+ HT+ V +V SP L S D+ V +
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT---VSPDGSLCASSDKDGVARLWD 224
Query: 197 ISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++ + A A + + + P+ + + E G I+ FD+ + +
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPN-RYWMCAATEKG-IRIFDLENKDIIVELAPE----- 277
Query: 256 LHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
H K + C + L +G TD ++++W +S N
Sbjct: 278 -HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 188
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
K + D+ + TL H V ++++P L+ + LA+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 138 LASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVM-- 192
LA+ S+DK +KI++V L TL H V V W H IL S S+D V++
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 193 ----KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAKSDPD 246
+ ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 84 EENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFK------- 131
Query: 247 STSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDLSNNQ 294
S + AH V + S+ P TG D +VK+W +++
Sbjct: 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191
Query: 295 PSCI 298
+ +
Sbjct: 192 QTYV 195
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEI 332
LLATGS+D +KLWDL NQ C RN G SV SP +LA + G L++
Sbjct: 721 LLATGSSDCFLKLWDL--NQKEC---RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 333 WDTLS-----DAGISNRFSKYSKPKKPQSVI 358
WD S + F P++ VI
Sbjct: 776 WDATSANERKSINVKQFFLNLEDPQEDMEVI 806
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H D VL A++ + R +A+ S DK+VKIW+ G+ T + H+++V + + S +
Sbjct: 662 HEDEVLCCAFSTDDR-FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL 720
Query: 181 LL-SGSFD 187
LL +GS D
Sbjct: 721 LLATGSSD 728
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 129 AWNKEF---RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 185
W+ +F L S+S D ++++W+ KC + L H + V+ +S LLS S
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKDFRLLKNSR--LLSWS 1068
Query: 186 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI-----RT 240
FD +V + W + + E FV GT+ DI +
Sbjct: 1069 FDGTVKV------------WNIIT--------GNKEKDFVC--HQGTVLSCDISHDATKF 1106
Query: 241 AKSDPDSTSQQSSF-------TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
+ + D T++ SF L H+ V +++ + LLATG + +++W++SN
Sbjct: 1107 SSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNVSNG 1165
Query: 294 QPSCIASRNPKAGA------VFSVAFSEDSPFVLAIGG 325
+ + + + GA V + FS D +++ GG
Sbjct: 1166 ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 38/182 (20%)
Query: 134 FRNILASASADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNH-HSPQILLSGSFDRSV 190
+ LA+ S+D+ VKI+DV G L L H V VAW H IL S S+DR V
Sbjct: 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 191 VMKDARIST------HSGFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAK 242
++ T H+G + V S+ W PH ++ +++ DG I + T
Sbjct: 84 IIWREENGTWEKSHEHAGHD----SSVNSVCWAPH-DYGLILACGSSDGAIS---LLTYT 135
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLV-------------PNLL---ATGSTDKMVK 286
+ ++ + +AH +S+ P V PN + A+G D ++K
Sbjct: 136 GEGQWEVKKIN---NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIK 192
Query: 287 LW 288
LW
Sbjct: 193 LW 194
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 33/240 (13%)
Query: 121 HTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS 177
H V +AW + + NILAS S D++V IW G + EH H V +V W H
Sbjct: 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD 115
Query: 178 PQILLS-GSFDRSVVM--------------KDARISTHSGFKWAVAADVESLAWDPHAEH 222
++L+ GS D ++ + +A + WA A SL P +
Sbjct: 116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175
Query: 223 -SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP---LVPNLLAT 278
+++ G I+ K + D ++ L AH V +++ P L + +A+
Sbjct: 176 PNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQ-KLEAHSDWVRDVAWAPSIGLPTSTIAS 233
Query: 279 GSTDKMVKLW---DLSNN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
S D V +W D S+N P + N V+ V++S + +LA+ G K+ +W
Sbjct: 234 CSQDGRVFIWTCDDASSNTWSPKLLHKFND---VVWHVSWSI-TANILAVSGGDNKVTLW 289
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 62/175 (35%), Gaps = 50/175 (28%)
Query: 138 LASASADKQVKIW---DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 194
AS D +K+W + K LE H+D V+ VAW +P I L S S +D
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW---APSIGLPTSTIASC-SQD 237
Query: 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 254
R+ F W D S W P H F
Sbjct: 238 GRV-----FIW-TCDDASSNTWSPKLLHKF------------------------------ 261
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGAV 308
+ V +S++ + N+LA D V LW S + Q CI+ N G+V
Sbjct: 262 -----NDVVWHVSWS-ITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSV 310
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 276 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
LAT S+D+ VK++D+ N IA G V+ VA++
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA 66
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 138 LASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196
+ S S D VK+W+ T E H V VA+N P SG DR+V +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 197 ISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSS 253
ST F + V + + P + ++++ D TIK +D +T +
Sbjct: 172 QST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCV 221
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
TL H V ++P +P ++ +GS D +K+W+ S
Sbjct: 222 ATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 315 -EDSPFVLAIGGSKGKLEIWD 334
D P+++ ++IWD
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWD 214
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 284
+V +D I+ F+ T + D AH + +I+ +P P +L+ GS D
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVD---------FEAHPDYIRSIAVHPTKPYVLS-GSDDLT 120
Query: 285 VKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 332
VKLW+ NN C+A NPK + F+ + + V ++G S +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 333 WDTLSDAGISNRFSKYSKPKKPQSV 357
T + G+ N Y P KP +
Sbjct: 180 -TTGQERGV-NYVDYYPLPDKPYMI 202
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 161
H V+ +A+N + + AS D+ VK+W + N TL
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 138 LASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196
+ S S D VK+W+ T E H V VA+N P SG DR+V +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 197 ISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSS 253
ST F + V + + P + ++++ D TIK +D +T +
Sbjct: 172 QST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCV 221
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
TL H V ++P +P ++ +GS D +K+W+ S
Sbjct: 222 ATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 315 -EDSPFVLAIGGSKGKLEIWD 334
D P+++ ++IWD
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWD 214
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 284
+V +D I+ F+ T + D AH + +I+ +P P +L+ GS D
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVD---------FEAHPDYIRSIAVHPTKPYVLS-GSDDLT 120
Query: 285 VKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 332
VKLW+ NN C+A NPK + F+ + + V ++G S +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 333 WDTLSDAGISNRFSKYSKPKKPQSV 357
T + G+ N Y P KP +
Sbjct: 180 -TTGQERGV-NYVDYYPLPDKPYMI 202
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 161
H V+ +A+N + + AS D+ VK+W + N TL
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 140 SASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 198
S S D VK+W+ T E H V VA+N P SG DR+V + S
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 199 THSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFT 255
T + F + V + + P + ++++ D TIK +D +T + T
Sbjct: 174 TPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCVAT 223
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
L H V ++P +P ++ +GS D +K+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 315 -EDSPFVLAIGGSKGKLEIWD 334
D P+++ ++IWD
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWD 214
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
+ +AS D +KIWD C TLE H V + H + I++SGS D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTL 252
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 140 SASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 198
S S D VK+W+ T E H V VA+N P SG DR+V + S
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 199 THSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFT 255
T + F + V + + P + ++++ D TIK +D +T + T
Sbjct: 174 TPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCVAT 223
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
L H V ++P +P ++ +GS D +K+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 315 -EDSPFVLAIGGSKGKLEIWD 334
D P+++ ++IWD
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWD 214
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
+ +AS D +KIWD C TLE H V + H + I++SGS D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTL 252
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHS 177
H+ SV GL W+ + I ASASADK +KIW+VA K T+ T D+ + W +
Sbjct: 238 HSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW---T 293
Query: 178 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237
Q L+S S + + + + + ++ + +L+ + F E G I +D
Sbjct: 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE-GHINSWD 352
Query: 238 IRTAKSD 244
I T S+
Sbjct: 353 ISTGISN 359
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 128 LAWNKEFRNILASASADKQ---VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
++W+ E + I A ++ V ++D NLT + + +V + P ++SG
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA--MNSVDFKPSRPFRIISG 166
Query: 185 SFDRSVVMKD-------ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI---K 234
S D +V + + + H+ F V S+ ++P F + DGTI
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKF-------VHSVRYNPDGSL-FASTGGDGTIVLYN 218
Query: 235 GFD-IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
G D +T + DS AH +V ++++P +A+ S DK +K+W+++
Sbjct: 219 GVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPD-GTKIASASADKTIKIWNVA 269
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 267
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 328 GKLEIWDTL 336
+WD L
Sbjct: 292 FNCNVWDAL 300
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 256 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 312
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 313 FSEDSPFVLAIGGSKGKLEIWD 334
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 181 LLSGSFDRSVVMKDAR 196
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 267
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 196 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 244
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 245 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 302
Query: 328 GKLEIWDTL 336
+WD L
Sbjct: 303 FNCNVWDAL 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 224
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 273
Query: 256 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 312
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 274 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 329
Query: 313 FSEDSPFVLAIGGSKGKLEIWD 334
D +A G L+IW+
Sbjct: 330 GVTDDGMAVATGSWDSFLKIWN 351
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 194 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 251
Query: 181 LLSGSFDRSVVMKDAR 196
+GS D + + D R
Sbjct: 252 FATGSDDATCRLFDLR 267
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 267
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 328 GKLEIWDTLSD------AGISNRFS 346
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 256 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 312
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 313 FSEDSPFVLAIGGSKGKLEIWD 334
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 181 LLSGSFDRSVVMKDAR 196
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 267
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 328 GKLEIWDTLSD------AGISNRFS 346
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 256 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 312
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 313 FSEDSPFVLAIGGSKGKLEIWD 334
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 181 LLSGSFDRSVVMKDAR 196
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 267
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 328 GKLEIWDTLSD------AGISNRFS 346
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 256 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 312
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 313 FSEDSPFVLAIGGSKGKLEIWD 334
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 181 LLSGSFDRSVVMKDAR 196
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 196
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 316 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 357
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 311
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 312 AFSEDSPFVLAIGGSKGKLEIWD 334
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 175
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 234
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 286
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 212
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 213 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263
S H A+ ++ +S D T++ +D+ T + T Q+ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQR--FVGHKSDVMS 112
Query: 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 196
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 316 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 357
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 311
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 312 AFSEDSPFVLAIGGSKGKLEIWD 334
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 175
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 234
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 286
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 212
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 213 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263
S H A+ ++ +S D T++ +D+ T + T Q+ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQR--FVGHKSDVMS 112
Query: 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG-------SFDRS 189
++ASA D ++ +W++AA K TL D+V ++A++ + + + S D
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
++ D R +G+ A SLAW + F D I+ + + TA
Sbjct: 269 YLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLF-AGYTDNVIRVWQVMTA 318
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 196
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 134
Query: 197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++T G W V + + + D +K +++ + + D
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 185
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 186 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 241
Query: 316 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 357
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 242 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 284
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 311
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 312 AFSEDSPFVLAIGGSKGKLEIWD 334
+ D + L+ K L +WD
Sbjct: 66 TLTADGAYALSASWDK-TLRLWD 87
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 175
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 234
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 70 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 286
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 127 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 173
Query: 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 174 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 218
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 212
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 53
Query: 213 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263
S H A+ ++ +S D T++ +D+ T ++ F H D
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET-------YQRFVGHKSDVMS 106
Query: 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
I +++ +GS DK +K+W + + C+A+
Sbjct: 107 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 137
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG-------SFDRS 189
++ASA D ++ +W++AA K TL D+V ++A++ + + + S D
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 262
Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
++ D R +G+ A SLAW + F D I+ + + TA
Sbjct: 263 YLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLF-AGYTDNVIRVWQVMTA 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 196
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 316 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 357
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 311
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 312 AFSEDSPFVLAIGGSKGKLEIWD 334
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 175
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 234
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 286
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 212
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 213 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263
S H A+ ++ +S D T++ +D+ T + T Q+ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQR--FVGHKSDVMS 112
Query: 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG-------SFDRS 189
++ASA D ++ +W++AA K TL D+V ++A++ + + + S D
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
++ D R +G+ A SLAW + F D I+ + + TA
Sbjct: 269 YLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLF-AGYTDNVIRVWQVMTA 318
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 196
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI-ISGSRDKTIKVWTIKGQC 140
Query: 197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD--------- 191
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE---VFSLAFSP 247
Query: 316 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 357
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 311
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 312 AFSEDSPFVLAIGGSKGKLEIWD 334
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG-------SFDRS 189
++ASA D ++ +W++AA K TL D+V ++A++ + + + S D
Sbjct: 210 LIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
++ D R +G+ A SLAW + F D I+ + + TA
Sbjct: 269 YLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLF-AGYTDNVIRVWQVXTA 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 35/223 (15%)
Query: 121 HTDSVLGLAWNKEFRNILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 179
H V LA ++E N A S+S DK +++WD+ G H +V +VA++ + Q
Sbjct: 75 HNHFVSDLALSQE--NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 180 ILLSGSFDRSV----VMKDARIST-----HSGFKWAVAADVESLAWDPHAEHSFVVSLE- 229
IL +G+ +R + ++ + + S+ HS W + + F
Sbjct: 133 ILSAGA-EREIKLWNILGECKFSSAEKENHS--DWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 230 ---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 286
DG +K ++ T+ Q +T AH+ V +S +P +ATG DK +
Sbjct: 190 VGWDGRLKVWN----------TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLL 238
Query: 287 LWDLSNNQPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG 328
+WD+ N R AG+ + +AF+ +V A+G +G
Sbjct: 239 IWDILN---LTYPQREFDAGSTINQIAFNPKLQWV-AVGTDQG 277
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
+ S DK ++LWDL + V+SVAFS D+ +L+ G + ++++W+ L
Sbjct: 93 SSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAER-EIKLWNILG 149
Query: 338 DAGISN 343
+ S+
Sbjct: 150 ECKFSS 155
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 29/217 (13%)
Query: 137 ILASASADKQVKIWDVAAGKCN-------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189
+L S S DK V IW + + N L H V +A + + +S S+D++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FAISSSWDKT 99
Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 249
+ + D R T ++V S+A+ P E IK ++I
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER-EIKLWNIL-------GEC 151
Query: 250 QQSSFTLHAHDKAVCTISYNPLVPN---------LLATGSTDKMVKLWDLSNNQPSCIAS 300
+ SS H V + Y+P++ + A+ D +K+W N +
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW---NTNFQIRYT 208
Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
V ++ S + ++ A GG KL IWD L+
Sbjct: 209 FKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILN 244
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 99/266 (37%), Gaps = 46/266 (17%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
H + VL + W K+ R I++S S D +V +WD + V A A+ I
Sbjct: 63 HGNKVLCMDWCKDKRRIVSS-SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 181 LLSG----------SFDR---------SVVM------------KDARISTHSGFKWAVAA 209
G +FD+ SV M D +I T SG
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181
Query: 210 DVES--LAWDPHAEHSFVVSL-----EDGTI---KGFDIRTAKSDPDSTSQQSSFTLHAH 259
DVES L H + V+ L E G G D + D S +F H
Sbjct: 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241
Query: 260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 319
D V ++ Y P + A+GS D +L+DL ++ I S+ SV FS
Sbjct: 242 D--VNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 320 VLAIGGSKGKLEIWDTLSDAGISNRF 345
+ A G + + +WD L + +S F
Sbjct: 299 LFA-GYNDYTINVWDVLKGSRVSILF 323
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 21/224 (9%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 196
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 316 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 357
+ ++ A + K+ D L D + F+ YS +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSAAAEPHAV 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 311
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 312 AFSEDSPFVLAIGGSKGKLEIWD 334
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 175
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 234
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 286
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 212
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 213 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263
S H A+ ++ +S D T++ +D+ T + T Q+ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQR--FVGHKSDVMS 112
Query: 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG-------SFDRS 189
++ASA D ++ +W++AA K TL D+V ++A++ + + + S D
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
++ D R +G+ A SLAW + F D I+ + + TA
Sbjct: 269 YLVDDLR-PEFAGYSAAAEPHAVSLAWSADGQTLF-AGYTDNVIRVWQVMTA 318
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW-NHHSPQ 179
HT VL + W+ + + +AS DK K+WD+++ + + + H V+ + W +
Sbjct: 85 HTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYS 142
Query: 180 ILLSGSFDRSVVMKDARIS 198
+++GS+D+++ D R S
Sbjct: 143 CVMTGSWDKTLKFWDTRSS 161
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK-LEIWDTL 336
T S DK K+WDLS+NQ IA + V ++ + + + + GS K L+ WDT
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 337 S 337
S
Sbjct: 160 S 160
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 260 DKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317
D ++ +S++P L N L GS V+ W++ ++ + ++ G V V +S+D
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 318 PFVLAIGGSKGKLEIWDTLSDAGI 341
V K ++WD S+ I
Sbjct: 99 SKVFTASCDK-TAKMWDLSSNQAI 121
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 11/152 (7%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199
S D VK+WD++ + H+ +V VA I LS D +++ D R
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Query: 200 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 257
+ A+D S+ W P + +F E G + +I+ +PDS T
Sbjct: 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NPDSAQ-----TSA 266
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
H + + ++Y+ LA+ S D V + D
Sbjct: 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268
A V +AW +E +V+ + G ++ ++I +S + F + HD V T+S
Sbjct: 95 AGVTDVAW--VSEKGILVASDSGAVELWEILEKES-----LLVNKFAKYEHDDIVKTLSV 147
Query: 269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328
+ +G D VK+WDLS Q + + S N + V VA + G G
Sbjct: 148 FSDGTQAV-SGGKDFSVKVWDLS--QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204
Query: 329 KLEIWDT 335
++ +WDT
Sbjct: 205 RILLWDT 211
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----IASRNPKAGAV 308
+ L H K V ++ NP LAT S D+ VK+WDL + + R+P A
Sbjct: 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
Query: 309 FS 310
FS
Sbjct: 304 FS 305
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----IASRNPKAGAV 308
+ L H K V ++ NP LAT S D+ VK+WDL + + R+P A
Sbjct: 245 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 304
Query: 309 FS 310
FS
Sbjct: 305 FS 306
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----IASRNPKAGAV 308
+ L H K V ++ NP LAT S D+ VK+WDL + + R+P A
Sbjct: 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
Query: 309 FS 310
FS
Sbjct: 304 FS 305
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292
F H V +NP L+AT S D VKLWDL N
Sbjct: 197 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 235
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292
F H V +NP L+AT S D VKLWDL N
Sbjct: 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
+L +A++ + + LAS + D + I+D+A GK TLE H ++++ ++ S Q+L++
Sbjct: 167 ILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTA 224
Query: 185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 244
S D + + D + + +G A+ V ++A+ P H FV S D ++K +D+ T
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT---- 279
Query: 245 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
+ T H V + YN +++ G D+ + ++D
Sbjct: 280 -----RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-DQEIHIYD 318
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 98/211 (46%), Gaps = 22/211 (10%)
Query: 129 AWNKEFR---NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLS 183
AW F LA+ + +V I+ V +GK +L+ + ++A +SP + L S
Sbjct: 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA---YSPDGKYLAS 181
Query: 184 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 243
G+ D + + D A + SL + P ++ V + +DG IK +D++ A
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANL 240
Query: 244 DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 303
+ TL H V +++ P + +++ S+DK VK+WD+ +C+ +
Sbjct: 241 ---------AGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGTR--TCVHTFFD 288
Query: 304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
V+ V ++ + ++++G + ++ I+D
Sbjct: 289 HQDQVWGVKYNGNGSKIVSVGDDQ-EIHIYD 318
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAF 313
TL H + +I + TGS D +KLWD+SN Q C+A+ ++P V V F
Sbjct: 69 TLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQ--CVATWKSPV--PVKRVEF 123
Query: 314 SEDSPFVLAI 323
S + LAI
Sbjct: 124 SPCGNYFLAI 133
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 36/182 (19%)
Query: 134 FRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLS-----GSF 186
F + SAD +K+WDV+ G+C T + +V+ ++ IL + GS
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 187 DRSVVMKDA--------------RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 232
+ + +D+ +I TH G A A W ++ + +DG
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA-----GWSTKGKY-IIAGHKDGK 198
Query: 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292
I +D+ DS + H+K++ + ++P + + T S D L D+S
Sbjct: 199 ISKYDVSNNYEYVDS--------IDLHEKSISDMQFSPDLTYFI-TSSRDTNSFLVDVST 249
Query: 293 NQ 294
Q
Sbjct: 250 LQ 251
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 272 VPNLLATGSTDKMVKLWDL--SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 329
P +L S ++ K+WD N+PS I S + V + V+A GG G
Sbjct: 202 TPEILTVNSIGQL-KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGM 260
Query: 330 LEIWD 334
L IWD
Sbjct: 261 LSIWD 265
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFT-----LHAHDKAVCTISYNPLVPNLLATGSTDKMV 285
G +K +D R ++P SQ S T LH D+ +P +++ATG D M+
Sbjct: 212 GQLKIWDFRQQGNEP---SQILSLTGDRVPLHCVDR-------HPNQQHVVATGGQDGML 261
Query: 286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338
+WD+ ++ ++ V F +P L G L WD +D
Sbjct: 262 SIWDVRQGTMP-VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277
P+ +H +DG + +D+R + P S L AH+ + + ++P P L
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQG-TMPVSL-------LKAHEAEMWEVHFHPSNPEHLF 297
Query: 278 TGSTDKMVKLWDLSNNQP 295
T S D + WD S + P
Sbjct: 298 TCSEDGSLWHWDASTDVP 315
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 213 SLAWDPHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTIS 267
+L+ D + ++S E G+I F D+RT ++ + Q+ F H K V +
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE--AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+NP VP+++A D + + ++ C + P AV SV +S LA+G
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK-QLAVGKQN 213
Query: 328 GKL 330
G +
Sbjct: 214 GTV 216
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
G +K +DI S P + S S D + + P L+ G + +WDL
Sbjct: 72 GCVKVWDI----SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL-SIWDL 126
Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
+ P A A A +++A S DS + S G + +WD
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSC-CSDGNIAVWD 169
>pdb|1OVW|A Chain A, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|B Chain B, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|C Chain C, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|D Chain D, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
Length = 398
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 300 SRNPKAGAVFSVAFSED----SPFVLAIGGSKGK------LEIWDTLSDA 339
SRN KAGA + + + +PF+ +G KG+ L+IW+ S A
Sbjct: 158 SRNSKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRA 207
>pdb|2OVW|A Chain A, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|B Chain B, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|C Chain C, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|D Chain D, Endoglucanase I Complexed With Cellobiose
pdb|3OVW|A Chain A, Endoglucanase I Native Structure
pdb|3OVW|B Chain B, Endoglucanase I Native Structure
pdb|4OVW|A Chain A, Endoglucanase I Complexed With Epoxybutyl Cellobiose
pdb|4OVW|B Chain B, Endoglucanase I Complexed With Epoxybutyl Cellobiose
Length = 411
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 300 SRNPKAGAVFSVAFSED----SPFVLAIGGSKGK------LEIWDTLSDA 339
SRN KAGA + + + +PF+ +G KG+ L+IW+ S A
Sbjct: 158 SRNSKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRA 207
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ----AVAWNHH 176
H+ V+ L++N L SA D +++ WDV + TL H D ++ +A + H
Sbjct: 300 HSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 358
Query: 177 SPQILLSGSFDRSVVMKDAR 196
+ G FD + K R
Sbjct: 359 GDSLAEPGVFDVKFLKKGWR 378
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 213 SLAWDPHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTIS 267
+L+ D + ++S E G+I F D+RT ++ + Q+ F H K V +
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE--AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+NP VP+++A D + + ++ C + P AV SV +S LA+G
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK-QLAVGKQN 213
Query: 328 GKL 330
G +
Sbjct: 214 GTV 216
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ----AVAWNHH 176
H+ V+ L++N L SA D +++ WDV + TL H D ++ +A + H
Sbjct: 290 HSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 177 SPQILLSGSFDRSVVMKDAR 196
+ G FD + K R
Sbjct: 349 GDSLAEPGVFDVKFLKKGWR 368
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 213 SLAWDPHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTIS 267
+L+ D + ++S E G+I F D+RT ++ + Q+ F H K V +
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE--AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
+NP VP+++A D + + ++ C + P AV SV +S LA+G
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK-QLAVGKQN 213
Query: 328 GKL 330
G +
Sbjct: 214 GTV 216
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPLVPNLLATG-STDKMVKL 287
DG+ + D++ +SDPD +Q L+ T+ +P LL+ S +++ +L
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 185
Query: 288 WDLS 291
D+S
Sbjct: 186 DDMS 189
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPLVPNLLATG-STDKMVKL 287
DG+ + D++ +SDPD +Q L+ T+ +P LL+ S +++ +L
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 185
Query: 288 WDLSN 292
D+S+
Sbjct: 186 DDMSS 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 172 AWNHHSPQILLSG-----SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE----H 222
A+ S +L+SG S R V+K R++ + K D +W+ E +
Sbjct: 134 AYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYY 193
Query: 223 SFVVSLED---GTIKGFDI---RTAKSDPDST 248
S V D GT + FD+ RT K D D T
Sbjct: 194 SLVAEQSDIVIGTREEFDVLENRTEKGDNDET 225
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPLVPNLLATG-STDKMVKL 287
DG+ + D++ +SDPD +Q L+ T+ +P LL+ S +++ +L
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRL 185
Query: 288 WDLS 291
D+S
Sbjct: 186 DDMS 189
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|A Chain A, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|C Chain C, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|E Chain E, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Q Chain Q, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|C Chain C, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
pdb|3CLR|C Chain C, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
pdb|3CLS|C Chain C, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
pdb|3CLT|C Chain C, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
pdb|3CLU|C Chain C, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 264
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 131 NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
++ R LA AD+ V++WD AA + + ++ +P ++ +G
Sbjct: 70 DESLRKCLAKG-ADRAVRVWDDAAEGSDAIV---VGRILTEVIKKEAPDMVFAGVQSSDQ 125
Query: 191 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV-VSLEDGTIKGFDI 238
IS S W AA V L + P + + LE G ++ +I
Sbjct: 126 AYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEI 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,183,474
Number of Sequences: 62578
Number of extensions: 440911
Number of successful extensions: 1627
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 401
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)