Query 018293
Match_columns 358
No_of_seqs 645 out of 2009
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 07:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0270 WD40 repeat-containing 100.0 1.8E-50 3.8E-55 320.4 27.5 331 1-348 131-461 (463)
2 KOG0271 Notchless-like WD40 re 100.0 3.5E-49 7.5E-54 307.6 25.0 293 1-349 121-452 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.9E-48 1.5E-52 303.7 20.4 275 2-334 182-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-47 9E-52 299.4 18.3 251 60-351 182-433 (459)
5 KOG0271 Notchless-like WD40 re 100.0 2.8E-45 6.1E-50 285.8 22.9 279 1-334 163-479 (480)
6 KOG0286 G-protein beta subunit 100.0 3.3E-43 7.2E-48 265.0 26.4 281 1-334 61-343 (343)
7 KOG0263 Transcription initiati 100.0 1.6E-42 3.5E-47 293.6 24.6 266 60-341 385-654 (707)
8 KOG0284 Polyadenylation factor 100.0 4E-43 8.6E-48 275.8 17.2 277 2-336 103-380 (464)
9 KOG0315 G-protein beta subunit 100.0 7.4E-41 1.6E-45 246.9 26.1 294 6-350 8-302 (311)
10 KOG0286 G-protein beta subunit 100.0 1.4E-40 3E-45 250.9 25.5 254 49-350 58-317 (343)
11 KOG0277 Peroxisomal targeting 100.0 2.2E-40 4.7E-45 245.1 21.4 291 1-335 14-308 (311)
12 KOG0279 G protein beta subunit 100.0 8.5E-40 1.8E-44 245.1 24.4 249 64-351 27-277 (315)
13 KOG0295 WD40 repeat-containing 100.0 9.3E-40 2E-44 253.4 23.8 276 2-335 115-405 (406)
14 KOG0279 G protein beta subunit 100.0 4E-38 8.6E-43 236.2 27.6 233 62-337 72-314 (315)
15 KOG0273 Beta-transducin family 100.0 1.4E-38 3E-43 254.7 25.2 248 46-344 235-490 (524)
16 KOG0284 Polyadenylation factor 100.0 2.1E-39 4.5E-44 255.0 16.1 240 60-342 103-343 (464)
17 KOG0645 WD40 repeat protein [G 100.0 8.2E-37 1.8E-41 228.2 26.3 280 1-336 20-311 (312)
18 KOG0285 Pleiotropic regulator 100.0 6.1E-38 1.3E-42 243.0 20.7 248 51-344 150-397 (460)
19 KOG0265 U5 snRNP-specific prot 100.0 3.2E-37 7E-42 233.6 22.9 251 60-350 54-310 (338)
20 KOG0263 Transcription initiati 100.0 6.4E-38 1.4E-42 265.9 21.1 196 58-293 456-651 (707)
21 KOG0265 U5 snRNP-specific prot 100.0 1.1E-36 2.4E-41 230.7 25.3 278 1-334 53-336 (338)
22 KOG0266 WD40 repeat-containing 100.0 7.3E-37 1.6E-41 265.0 27.8 278 1-336 165-454 (456)
23 KOG0291 WD40-repeat-containing 100.0 2.9E-36 6.4E-41 254.4 29.8 283 2-344 272-558 (893)
24 KOG0273 Beta-transducin family 100.0 3.6E-36 7.8E-41 240.9 27.4 275 1-336 241-523 (524)
25 KOG0295 WD40 repeat-containing 100.0 3.6E-37 7.9E-42 239.0 19.0 246 60-347 115-375 (406)
26 KOG0318 WD40 repeat stress pro 100.0 3.8E-35 8.2E-40 238.2 30.1 312 2-340 197-564 (603)
27 PLN00181 protein SPA1-RELATED; 100.0 6.4E-35 1.4E-39 271.0 36.0 288 1-335 489-792 (793)
28 cd00200 WD40 WD40 domain, foun 100.0 7.6E-35 1.6E-39 240.8 32.4 275 1-334 15-289 (289)
29 KOG0319 WD40-repeat-containing 100.0 3.5E-36 7.5E-41 253.3 23.6 284 4-342 333-625 (775)
30 KOG0264 Nucleosome remodeling 100.0 1.4E-35 3E-40 236.7 24.5 265 42-337 120-405 (422)
31 KOG0276 Vesicle coat complex C 100.0 1.6E-35 3.5E-40 245.1 25.5 281 1-339 19-301 (794)
32 KOG0276 Vesicle coat complex C 100.0 2.9E-36 6.4E-41 249.4 20.9 243 59-342 19-263 (794)
33 KOG0283 WD40 repeat-containing 100.0 7.8E-36 1.7E-40 255.2 24.0 267 58-337 272-577 (712)
34 KOG0281 Beta-TrCP (transducin 100.0 6E-37 1.3E-41 236.9 15.4 268 6-342 206-483 (499)
35 KOG0277 Peroxisomal targeting 100.0 4.8E-36 1E-40 222.2 19.5 219 121-349 59-278 (311)
36 KOG0292 Vesicle coat complex C 100.0 1.8E-35 3.8E-40 253.9 25.6 281 1-339 15-324 (1202)
37 KOG0266 WD40 repeat-containing 100.0 3.1E-35 6.7E-40 254.8 27.7 250 59-347 165-420 (456)
38 KOG0316 Conserved WD40 repeat- 100.0 9.7E-36 2.1E-40 218.2 20.3 240 58-344 22-265 (307)
39 KOG0315 G-protein beta subunit 100.0 3.1E-35 6.8E-40 217.2 23.0 232 64-338 9-247 (311)
40 KOG0291 WD40-repeat-containing 100.0 7.4E-35 1.6E-39 246.0 28.4 289 2-346 314-622 (893)
41 KOG0296 Angio-associated migra 100.0 5.1E-35 1.1E-39 227.3 24.8 276 1-336 70-398 (399)
42 KOG0281 Beta-TrCP (transducin 100.0 5.9E-37 1.3E-41 237.0 13.8 225 64-341 206-433 (499)
43 KOG0319 WD40-repeat-containing 100.0 3E-35 6.4E-40 247.7 25.0 285 6-349 292-590 (775)
44 KOG0293 WD40 repeat-containing 100.0 2.7E-35 5.9E-40 232.4 22.8 281 1-337 230-514 (519)
45 KOG0313 Microtubule binding pr 100.0 2.1E-34 4.5E-39 224.9 26.6 280 6-336 114-418 (423)
46 KOG0285 Pleiotropic regulator 100.0 4.7E-35 1E-39 227.0 22.2 278 1-337 157-440 (460)
47 KOG0282 mRNA splicing factor [ 100.0 1.4E-35 3E-40 238.3 19.4 278 2-334 221-503 (503)
48 KOG0305 Anaphase promoting com 100.0 4.8E-34 1E-38 238.0 28.6 273 6-339 187-464 (484)
49 KOG0645 WD40 repeat protein [G 100.0 5.8E-34 1.3E-38 213.0 25.7 237 59-337 20-262 (312)
50 KOG0292 Vesicle coat complex C 100.0 4.2E-35 9.2E-40 251.5 21.6 255 58-344 14-288 (1202)
51 KOG0310 Conserved WD40 repeat- 100.0 2.5E-34 5.3E-39 231.4 23.5 281 1-339 32-312 (487)
52 PLN00181 protein SPA1-RELATED; 100.0 2.4E-33 5.2E-38 260.5 31.8 250 58-339 488-741 (793)
53 PTZ00421 coronin; Provisional 100.0 7.5E-33 1.6E-37 239.0 30.8 255 62-343 29-297 (493)
54 KOG0318 WD40 repeat stress pro 100.0 8.5E-33 1.9E-37 224.6 27.3 284 4-341 27-355 (603)
55 KOG0275 Conserved WD40 repeat- 100.0 1.9E-34 4.2E-39 221.3 15.4 281 2-334 220-507 (508)
56 KOG1407 WD40 repeat protein [F 100.0 4.8E-33 1E-37 207.1 22.0 246 59-346 26-271 (313)
57 KOG0282 mRNA splicing factor [ 100.0 4E-34 8.6E-39 230.0 17.1 247 62-347 223-473 (503)
58 KOG0275 Conserved WD40 repeat- 100.0 5.7E-34 1.2E-38 218.7 17.2 256 58-348 218-479 (508)
59 KOG0643 Translation initiation 100.0 5.1E-33 1.1E-37 207.6 21.1 237 60-337 17-318 (327)
60 cd00200 WD40 WD40 domain, foun 100.0 5.4E-32 1.2E-36 223.8 29.3 241 62-345 18-258 (289)
61 PTZ00420 coronin; Provisional 100.0 9.5E-32 2.1E-36 233.2 31.7 229 71-339 50-296 (568)
62 KOG0641 WD40 repeat protein [G 100.0 1.4E-30 2.9E-35 190.5 27.8 290 1-336 38-349 (350)
63 PTZ00421 coronin; Provisional 100.0 8.7E-31 1.9E-35 226.2 31.0 225 62-317 84-315 (493)
64 KOG0306 WD40-repeat-containing 100.0 1.5E-31 3.1E-36 226.1 24.6 276 2-340 380-668 (888)
65 KOG0313 Microtubule binding pr 100.0 1.1E-31 2.3E-36 209.8 21.9 242 65-348 115-389 (423)
66 KOG0296 Angio-associated migra 100.0 1.2E-31 2.6E-36 208.6 20.9 256 60-350 71-370 (399)
67 KOG0278 Serine/threonine kinas 100.0 1.8E-32 4E-37 202.9 15.4 277 3-341 25-302 (334)
68 KOG0316 Conserved WD40 repeat- 100.0 8.9E-32 1.9E-36 197.5 18.5 220 114-351 9-228 (307)
69 KOG0269 WD40 repeat-containing 100.0 5.9E-32 1.3E-36 229.1 19.5 296 2-341 46-345 (839)
70 KOG0274 Cdc4 and related F-box 100.0 4.1E-31 8.9E-36 228.5 24.4 275 7-348 218-494 (537)
71 KOG0973 Histone transcription 100.0 3.7E-31 8E-36 232.5 24.0 306 1-339 19-358 (942)
72 KOG1446 Histone H3 (Lys4) meth 100.0 6.6E-30 1.4E-34 195.7 27.3 249 58-347 19-273 (311)
73 KOG0293 WD40 repeat-containing 100.0 3.5E-31 7.7E-36 209.2 20.6 250 59-348 230-482 (519)
74 KOG1332 Vesicle coat complex C 100.0 1.2E-30 2.5E-35 192.6 20.6 243 63-337 21-287 (299)
75 KOG0289 mRNA splicing factor [ 100.0 4.1E-30 8.8E-35 204.4 23.9 278 1-335 225-505 (506)
76 KOG0647 mRNA export protein (c 100.0 3.1E-30 6.8E-35 196.0 21.8 246 58-343 32-288 (347)
77 KOG0269 WD40 repeat-containing 100.0 3.6E-31 7.7E-36 224.4 18.4 258 62-350 48-310 (839)
78 KOG0647 mRNA export protein (c 100.0 8.8E-30 1.9E-34 193.6 24.0 270 1-327 33-315 (347)
79 KOG0640 mRNA cleavage stimulat 100.0 6.8E-31 1.5E-35 200.5 17.8 255 58-336 117-426 (430)
80 KOG0294 WD40 repeat-containing 100.0 4.5E-29 9.7E-34 190.8 26.5 229 64-338 52-283 (362)
81 KOG0274 Cdc4 and related F-box 100.0 3.5E-30 7.6E-35 222.8 23.0 234 65-347 218-452 (537)
82 PTZ00420 coronin; Provisional 100.0 5.3E-29 1.2E-33 216.2 30.0 232 47-317 75-318 (568)
83 KOG0308 Conserved WD40 repeat- 100.0 1.4E-30 3E-35 216.9 19.0 241 63-340 35-289 (735)
84 KOG0264 Nucleosome remodeling 100.0 1.5E-29 3.2E-34 202.4 23.4 253 4-292 133-405 (422)
85 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-28 5.2E-33 187.2 28.6 276 1-339 20-306 (311)
86 KOG0310 Conserved WD40 repeat- 100.0 3.2E-30 6.9E-35 207.9 19.1 241 59-342 32-274 (487)
87 KOG0289 mRNA splicing factor [ 100.0 2.4E-29 5.3E-34 200.0 22.3 231 62-334 228-460 (506)
88 KOG0299 U3 snoRNP-associated p 100.0 1.7E-29 3.7E-34 202.3 21.4 256 60-340 149-414 (479)
89 KOG0772 Uncharacterized conser 100.0 1.2E-29 2.5E-34 206.1 20.0 256 58-346 172-455 (641)
90 KOG0288 WD40 repeat protein Ti 100.0 2.7E-30 5.8E-35 204.2 15.3 273 2-334 182-459 (459)
91 KOG0288 WD40 repeat protein Ti 100.0 1.9E-30 4.2E-35 205.0 14.0 244 60-346 182-427 (459)
92 KOG0299 U3 snoRNP-associated p 100.0 5E-29 1.1E-33 199.6 21.9 244 59-336 208-456 (479)
93 KOG1036 Mitotic spindle checkp 100.0 1.3E-28 2.8E-33 187.8 22.7 245 58-347 18-273 (323)
94 KOG0268 Sof1-like rRNA process 100.0 4.7E-30 1E-34 199.6 15.1 277 3-342 74-351 (433)
95 KOG0306 WD40-repeat-containing 100.0 3.2E-28 6.8E-33 206.1 26.4 245 60-350 380-636 (888)
96 KOG0283 WD40 repeat-containing 100.0 3.4E-29 7.4E-34 214.8 20.6 220 115-349 259-545 (712)
97 KOG0643 Translation initiation 100.0 1.7E-28 3.7E-33 183.6 21.5 225 117-350 5-234 (327)
98 KOG0646 WD40 repeat protein [G 100.0 4.3E-29 9.3E-34 200.4 19.2 263 8-318 51-332 (476)
99 KOG0278 Serine/threonine kinas 100.0 3.5E-30 7.5E-35 190.9 11.6 219 23-295 82-301 (334)
100 KOG0305 Anaphase promoting com 100.0 9.7E-29 2.1E-33 206.4 21.3 238 1-294 223-464 (484)
101 KOG1036 Mitotic spindle checkp 100.0 6.7E-28 1.4E-32 184.0 24.0 265 1-326 19-294 (323)
102 KOG0772 Uncharacterized conser 100.0 1.7E-28 3.7E-33 199.3 21.8 295 1-335 173-486 (641)
103 KOG0641 WD40 repeat protein [G 100.0 3.2E-27 7E-32 172.9 25.6 251 58-337 37-304 (350)
104 KOG0301 Phospholipase A2-activ 100.0 9.2E-28 2E-32 201.5 25.5 221 64-338 70-290 (745)
105 KOG2445 Nuclear pore complex c 100.0 1.5E-27 3.1E-32 182.1 23.6 247 60-336 20-318 (361)
106 KOG0639 Transducin-like enhanc 100.0 2.8E-28 6.1E-33 197.7 19.9 230 62-335 474-703 (705)
107 KOG0640 mRNA cleavage stimulat 100.0 9.7E-29 2.1E-33 188.8 16.2 219 116-347 106-346 (430)
108 KOG0307 Vesicle coat complex C 100.0 2.7E-29 5.8E-34 222.0 15.0 280 20-339 39-330 (1049)
109 KOG1408 WD40 repeat protein [F 100.0 1.1E-27 2.5E-32 201.9 24.1 313 1-337 330-714 (1080)
110 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.3E-26 4.9E-31 191.8 29.8 279 7-345 1-288 (300)
111 KOG1407 WD40 repeat protein [F 100.0 1.7E-26 3.6E-31 172.4 25.1 265 1-327 26-293 (313)
112 KOG0973 Histone transcription 100.0 1.1E-27 2.4E-32 210.8 21.9 253 60-342 20-318 (942)
113 KOG0302 Ribosome Assembly prot 100.0 1.4E-27 3E-32 186.9 19.9 251 64-334 164-436 (440)
114 KOG0300 WD40 repeat-containing 100.0 3E-27 6.4E-32 181.4 20.6 303 7-339 160-479 (481)
115 KOG4283 Transcription-coupled 100.0 1E-27 2.2E-32 182.0 17.5 222 120-352 41-292 (397)
116 KOG0646 WD40 repeat protein [G 100.0 1.5E-26 3.3E-31 185.8 24.6 241 64-345 49-316 (476)
117 KOG0300 WD40 repeat-containing 100.0 1.6E-27 3.4E-32 182.9 17.1 235 63-340 158-432 (481)
118 KOG0308 Conserved WD40 repeat- 100.0 5.1E-27 1.1E-31 195.8 19.3 276 5-337 35-328 (735)
119 KOG2106 Uncharacterized conser 100.0 2.7E-25 5.9E-30 180.4 28.1 273 2-335 207-520 (626)
120 KOG0302 Ribosome Assembly prot 100.0 2.8E-26 6.1E-31 179.6 21.5 222 110-339 139-381 (440)
121 KOG4283 Transcription-coupled 100.0 1.4E-26 3.1E-31 175.8 18.9 216 63-294 54-279 (397)
122 KOG0268 Sof1-like rRNA process 100.0 3.2E-27 6.8E-32 184.0 15.2 232 62-341 75-307 (433)
123 KOG0267 Microtubule severing p 100.0 3.8E-28 8.3E-33 204.8 10.0 222 63-327 38-259 (825)
124 KOG1273 WD40 repeat protein [G 100.0 3.2E-26 6.8E-31 175.5 19.4 249 60-348 30-292 (405)
125 KOG1274 WD40 repeat protein [G 100.0 1.3E-25 2.8E-30 194.4 25.4 244 60-337 20-263 (933)
126 KOG4328 WD40 protein [Function 99.9 7E-26 1.5E-30 181.6 21.8 267 46-348 186-462 (498)
127 KOG1408 WD40 repeat protein [F 99.9 1.9E-25 4.1E-30 188.7 24.0 303 3-350 266-685 (1080)
128 KOG0301 Phospholipase A2-activ 99.9 4.7E-26 1E-30 191.4 20.1 225 64-336 24-249 (745)
129 KOG0267 Microtubule severing p 99.9 6.2E-28 1.3E-32 203.5 8.7 210 118-343 24-233 (825)
130 KOG1539 WD repeat protein [Gen 99.9 2.1E-25 4.6E-30 191.2 23.2 307 2-337 295-649 (910)
131 KOG1274 WD40 repeat protein [G 99.9 7E-25 1.5E-29 189.9 25.7 268 1-333 19-297 (933)
132 KOG1539 WD repeat protein [Gen 99.9 7.2E-25 1.6E-29 187.9 25.3 285 7-347 172-617 (910)
133 KOG1034 Transcriptional repres 99.9 3.1E-25 6.8E-30 170.9 20.7 278 23-336 65-383 (385)
134 KOG0290 Conserved WD40 repeat- 99.9 1.5E-24 3.2E-29 164.6 23.9 290 7-332 59-361 (364)
135 KOG2055 WD40 repeat protein [G 99.9 5.9E-25 1.3E-29 176.5 22.8 285 1-336 219-512 (514)
136 KOG0321 WD40 repeat-containing 99.9 7.4E-25 1.6E-29 182.7 22.8 248 49-339 103-394 (720)
137 KOG4378 Nuclear protein COP1 [ 99.9 7.7E-25 1.7E-29 177.6 22.0 215 63-317 89-305 (673)
138 KOG0294 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 165.9 21.6 231 5-293 51-283 (362)
139 KOG0270 WD40 repeat-containing 99.9 1.7E-24 3.6E-29 173.2 21.1 247 5-295 190-453 (463)
140 KOG4378 Nuclear protein COP1 [ 99.9 2.5E-24 5.3E-29 174.7 21.3 270 23-341 13-285 (673)
141 KOG1332 Vesicle coat complex C 99.9 3.9E-25 8.5E-30 163.6 14.3 212 119-337 8-242 (299)
142 KOG0321 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 178.6 21.7 252 64-342 63-353 (720)
143 KOG2106 Uncharacterized conser 99.9 5E-23 1.1E-27 167.4 27.2 288 2-349 161-490 (626)
144 KOG2096 WD40 repeat protein [G 99.9 3.2E-23 7E-28 159.3 23.7 299 1-337 92-403 (420)
145 KOG0639 Transducin-like enhanc 99.9 1.5E-24 3.3E-29 176.2 16.0 245 58-343 424-670 (705)
146 KOG4328 WD40 protein [Function 99.9 5.3E-24 1.2E-28 170.9 18.3 210 117-336 181-399 (498)
147 KOG0307 Vesicle coat complex C 99.9 5.4E-25 1.2E-29 195.1 12.9 215 122-346 64-294 (1049)
148 KOG1587 Cytoplasmic dynein int 99.9 8.5E-23 1.8E-27 175.8 25.2 274 23-337 223-517 (555)
149 KOG2048 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 170.2 24.8 237 60-340 32-279 (691)
150 KOG1188 WD40 repeat protein [G 99.9 2.1E-23 4.6E-28 161.7 18.0 240 66-340 41-350 (376)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-22 6E-27 167.2 26.3 237 65-343 1-244 (300)
152 KOG2048 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 168.2 25.8 276 1-337 31-320 (691)
153 KOG1007 WD repeat protein TSSC 99.9 3.2E-22 6.9E-27 151.9 22.7 207 120-336 121-361 (370)
154 KOG2919 Guanine nucleotide-bin 99.9 1.3E-22 2.8E-27 156.4 20.6 251 60-339 56-331 (406)
155 KOG1538 Uncharacterized conser 99.9 5E-23 1.1E-27 173.1 19.7 271 1-337 18-294 (1081)
156 KOG2096 WD40 repeat protein [G 99.9 9.9E-23 2.1E-27 156.7 19.7 209 114-337 78-309 (420)
157 KOG2919 Guanine nucleotide-bin 99.9 2.4E-22 5.1E-27 154.9 21.1 282 2-328 56-362 (406)
158 KOG2445 Nuclear pore complex c 99.9 4.2E-22 9E-27 152.5 21.5 261 2-293 20-320 (361)
159 KOG0303 Actin-binding protein 99.9 1.4E-22 3.1E-27 160.0 19.2 221 117-350 76-308 (472)
160 KOG1273 WD40 repeat protein [G 99.9 4.6E-22 1E-26 152.8 21.3 291 1-343 29-329 (405)
161 KOG0290 Conserved WD40 repeat- 99.9 5.7E-22 1.2E-26 150.6 19.7 256 46-338 44-320 (364)
162 KOG0650 WD40 repeat nucleolar 99.9 7E-22 1.5E-26 164.0 21.3 303 1-333 406-732 (733)
163 KOG2055 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 159.6 19.6 244 58-340 218-471 (514)
164 KOG0642 Cell-cycle nuclear pro 99.9 2E-22 4.2E-27 166.1 16.0 258 59-350 300-575 (577)
165 KOG1009 Chromatin assembly com 99.9 2.8E-21 6E-26 153.3 19.3 256 62-341 22-377 (434)
166 KOG1063 RNA polymerase II elon 99.9 1.1E-20 2.5E-25 159.3 24.1 286 2-336 323-699 (764)
167 KOG1063 RNA polymerase II elon 99.9 7.1E-21 1.5E-25 160.6 22.5 288 2-338 274-650 (764)
168 KOG1310 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 162.3 16.2 234 112-347 40-314 (758)
169 KOG1007 WD repeat protein TSSC 99.9 8.3E-21 1.8E-25 144.3 20.2 238 65-337 26-290 (370)
170 KOG0650 WD40 repeat nucleolar 99.9 1.4E-21 3.1E-26 162.2 17.1 231 62-335 409-679 (733)
171 KOG0303 Actin-binding protein 99.9 1.2E-20 2.5E-25 149.3 21.4 214 46-295 81-298 (472)
172 KOG1517 Guanine nucleotide bin 99.9 2.5E-20 5.4E-25 164.4 24.9 302 1-339 1070-1384(1387)
173 KOG1188 WD40 repeat protein [G 99.9 6.2E-21 1.3E-25 148.1 17.4 198 136-342 41-248 (376)
174 KOG0649 WD40 repeat protein [G 99.9 2.8E-20 6E-25 138.1 19.7 245 60-337 17-275 (325)
175 PRK11028 6-phosphogluconolacto 99.9 4.8E-18 1E-22 143.1 32.1 243 60-337 41-305 (330)
176 KOG1445 Tumor-specific antigen 99.9 2.5E-20 5.4E-25 156.2 17.0 215 47-295 628-848 (1012)
177 KOG1034 Transcriptional repres 99.9 5.8E-20 1.3E-24 142.1 17.6 217 120-341 87-342 (385)
178 KOG2110 Uncharacterized conser 99.9 1.6E-18 3.4E-23 136.3 25.8 231 61-339 13-251 (391)
179 KOG1445 Tumor-specific antigen 99.9 8.3E-20 1.8E-24 153.1 18.3 258 61-352 587-860 (1012)
180 COG2319 FOG: WD40 repeat [Gene 99.8 6.9E-18 1.5E-22 147.8 31.4 285 2-339 72-362 (466)
181 KOG4227 WD40 repeat protein [G 99.8 2.8E-19 6.1E-24 141.7 19.8 253 58-336 61-387 (609)
182 KOG1587 Cytoplasmic dynein int 99.8 3.8E-19 8.3E-24 153.5 22.1 259 1-293 248-518 (555)
183 KOG0644 Uncharacterized conser 99.8 9.7E-21 2.1E-25 163.1 12.0 239 58-341 195-473 (1113)
184 KOG1524 WD40 repeat-containing 99.8 5.1E-19 1.1E-23 145.5 20.4 213 65-337 75-287 (737)
185 KOG0322 G-protein beta subunit 99.8 1.6E-19 3.5E-24 135.6 15.7 233 65-335 25-322 (323)
186 KOG1963 WD40 repeat protein [G 99.8 5.5E-18 1.2E-22 147.2 27.2 260 59-347 211-549 (792)
187 KOG1523 Actin-related protein 99.8 3.8E-18 8.2E-23 131.7 21.9 244 46-327 10-269 (361)
188 KOG1517 Guanine nucleotide bin 99.8 2.5E-18 5.5E-23 152.0 22.9 249 58-339 1069-1336(1387)
189 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-17 2.6E-22 146.3 27.2 246 60-345 72-323 (466)
190 KOG1009 Chromatin assembly com 99.8 1.1E-18 2.3E-23 138.7 17.0 172 2-196 20-195 (434)
191 KOG0649 WD40 repeat protein [G 99.8 5.8E-17 1.3E-21 120.7 24.9 286 2-333 17-313 (325)
192 KOG1272 WD40-repeat-containing 99.8 3.8E-20 8.3E-25 149.4 8.8 237 49-335 124-361 (545)
193 KOG2111 Uncharacterized conser 99.8 3.1E-17 6.8E-22 126.7 24.1 239 59-341 11-261 (346)
194 KOG1523 Actin-related protein 99.8 2.8E-18 6.1E-23 132.4 17.8 209 121-339 9-239 (361)
195 KOG0771 Prolactin regulatory e 99.8 1.4E-18 3E-23 138.9 16.6 204 126-339 148-357 (398)
196 KOG1538 Uncharacterized conser 99.8 1.2E-18 2.5E-23 147.2 16.5 231 58-335 17-251 (1081)
197 PRK01742 tolB translocation pr 99.8 1.5E-17 3.3E-22 144.3 22.9 211 58-316 208-426 (429)
198 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-18 3.8E-23 143.1 15.8 263 1-305 300-573 (577)
199 PRK11028 6-phosphogluconolacto 99.8 1.9E-16 4.2E-21 133.4 27.4 240 68-339 5-261 (330)
200 KOG2139 WD40 repeat protein [G 99.8 2.5E-16 5.5E-21 123.8 25.3 297 3-336 106-431 (445)
201 PRK01742 tolB translocation pr 99.8 5.9E-17 1.3E-21 140.7 23.5 203 119-345 200-412 (429)
202 KOG0644 Uncharacterized conser 99.8 1.9E-19 4E-24 155.3 7.7 229 110-347 178-437 (1113)
203 KOG1524 WD40 repeat-containing 99.8 7E-18 1.5E-22 138.9 16.3 183 135-338 75-257 (737)
204 KOG3881 Uncharacterized conser 99.8 5.1E-17 1.1E-21 128.8 20.4 211 121-347 104-331 (412)
205 KOG1334 WD40 repeat protein [G 99.8 1.4E-17 3E-22 135.6 15.9 297 1-340 148-470 (559)
206 KOG0322 G-protein beta subunit 99.8 3.8E-17 8.2E-22 123.0 16.7 158 121-290 149-322 (323)
207 KOG2394 WD40 protein DMR-N9 [G 99.8 9.7E-17 2.1E-21 132.3 20.4 228 62-342 182-458 (636)
208 KOG0771 Prolactin regulatory e 99.8 1.3E-17 2.9E-22 133.3 14.4 197 58-293 149-356 (398)
209 KOG1310 WD40 repeat protein [G 99.8 3.5E-17 7.6E-22 135.3 16.8 213 50-296 54-308 (758)
210 KOG2139 WD40 repeat protein [G 99.8 2.3E-16 4.9E-21 124.1 20.5 239 61-340 106-387 (445)
211 KOG1272 WD40-repeat-containing 99.8 6.2E-18 1.3E-22 136.8 12.1 278 1-342 135-415 (545)
212 KOG2394 WD40 protein DMR-N9 [G 99.8 1E-17 2.2E-22 138.0 13.4 224 5-242 183-455 (636)
213 KOG1963 WD40 repeat protein [G 99.8 1E-15 2.2E-20 133.3 25.6 241 58-340 21-326 (792)
214 PF02239 Cytochrom_D1: Cytochr 99.8 7.5E-15 1.6E-19 123.6 29.1 292 7-345 5-356 (369)
215 KOG4227 WD40 repeat protein [G 99.7 1.8E-16 4E-21 125.9 17.6 168 115-292 49-226 (609)
216 KOG1354 Serine/threonine prote 99.7 7.5E-16 1.6E-20 120.4 18.4 254 59-341 31-364 (433)
217 KOG4497 Uncharacterized conser 99.7 1.6E-15 3.5E-20 118.0 20.0 286 2-341 15-396 (447)
218 KOG1240 Protein kinase contain 99.7 6.5E-16 1.4E-20 139.0 20.3 228 110-347 1036-1284(1431)
219 KOG1240 Protein kinase contain 99.7 2.4E-15 5.2E-20 135.4 23.6 248 62-341 1058-1339(1431)
220 KOG0280 Uncharacterized conser 99.7 7.8E-15 1.7E-19 112.4 22.6 295 8-339 25-336 (339)
221 PRK03629 tolB translocation pr 99.7 7.9E-15 1.7E-19 127.1 25.9 213 58-316 203-428 (429)
222 PF10282 Lactonase: Lactonase, 99.7 2.4E-13 5.1E-18 114.7 33.6 276 19-336 12-322 (345)
223 KOG4497 Uncharacterized conser 99.7 5.8E-17 1.2E-21 125.9 10.3 233 60-343 15-247 (447)
224 PRK04922 tolB translocation pr 99.7 9.9E-15 2.1E-19 127.1 25.0 212 58-315 208-432 (433)
225 KOG2110 Uncharacterized conser 99.7 4.4E-14 9.6E-19 111.6 25.6 151 64-242 96-251 (391)
226 PRK03629 tolB translocation pr 99.7 2.3E-14 5E-19 124.2 26.5 205 120-344 196-413 (429)
227 PRK05137 tolB translocation pr 99.7 1.8E-14 4E-19 125.6 25.9 203 120-340 199-416 (435)
228 PRK02889 tolB translocation pr 99.7 3.2E-14 6.9E-19 123.5 26.3 200 120-335 193-402 (427)
229 PF08662 eIF2A: Eukaryotic tra 99.7 4.9E-15 1.1E-19 113.5 18.1 157 169-343 9-185 (194)
230 PRK04922 tolB translocation pr 99.7 2.8E-14 6.1E-19 124.3 24.8 200 120-337 201-412 (433)
231 KOG3881 Uncharacterized conser 99.7 7.6E-15 1.7E-19 116.6 18.1 214 65-316 115-342 (412)
232 PRK05137 tolB translocation pr 99.7 5.3E-14 1.1E-18 122.7 24.8 213 58-316 206-433 (435)
233 KOG1334 WD40 repeat protein [G 99.7 2.3E-15 4.9E-20 122.9 14.9 255 59-344 148-432 (559)
234 PRK02889 tolB translocation pr 99.7 3.1E-14 6.8E-19 123.5 22.6 214 58-316 200-425 (427)
235 KOG2321 WD40 repeat protein [G 99.7 4.8E-14 1E-18 117.6 21.5 196 126-337 137-344 (703)
236 KOG2321 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 117.2 20.2 243 60-343 58-309 (703)
237 KOG0309 Conserved WD40 repeat- 99.6 4.8E-15 1E-19 127.0 12.7 291 1-337 30-340 (1081)
238 KOG2111 Uncharacterized conser 99.6 6.5E-12 1.4E-16 97.7 28.5 158 121-293 93-258 (346)
239 PRK04792 tolB translocation pr 99.6 1.5E-12 3.3E-17 113.4 26.5 206 120-343 215-431 (448)
240 KOG1354 Serine/threonine prote 99.6 2.8E-13 6E-18 106.3 18.8 269 1-292 31-360 (433)
241 KOG0280 Uncharacterized conser 99.6 2.1E-13 4.6E-18 104.6 16.9 204 60-293 128-335 (339)
242 PF10282 Lactonase: Lactonase, 99.6 1E-11 2.3E-16 104.8 29.2 265 1-294 42-327 (345)
243 PRK04792 tolB translocation pr 99.6 2.2E-12 4.8E-17 112.4 25.7 215 58-316 222-447 (448)
244 TIGR02800 propeller_TolB tol-p 99.6 2.7E-12 5.8E-17 112.1 26.0 198 120-335 187-396 (417)
245 PRK01029 tolB translocation pr 99.6 2.8E-12 6E-17 110.9 25.2 219 58-317 189-426 (428)
246 PF08662 eIF2A: Eukaryotic tra 99.6 4E-13 8.6E-18 103.0 17.8 152 126-293 9-181 (194)
247 KOG4547 WD40 repeat-containing 99.6 6.7E-13 1.4E-17 111.3 19.5 190 133-337 3-221 (541)
248 PRK00178 tolB translocation pr 99.6 7.9E-12 1.7E-16 109.3 26.7 200 120-337 196-407 (430)
249 KOG0974 WD-repeat protein WDR6 99.6 4.7E-12 1E-16 112.9 25.0 192 6-241 98-290 (967)
250 PRK00178 tolB translocation pr 99.6 5.8E-12 1.3E-16 110.1 25.6 214 59-316 204-428 (430)
251 KOG1409 Uncharacterized conser 99.6 1.8E-12 3.8E-17 101.8 19.4 202 46-292 68-271 (404)
252 TIGR02800 propeller_TolB tol-p 99.6 4.5E-12 9.8E-17 110.7 24.5 191 58-292 194-398 (417)
253 PF02239 Cytochrom_D1: Cytochr 99.5 4.1E-12 9E-17 107.1 23.2 195 136-342 6-208 (369)
254 PRK01029 tolB translocation pr 99.5 6.9E-12 1.5E-16 108.5 24.9 209 121-340 183-407 (428)
255 KOG4547 WD40 repeat-containing 99.5 5E-12 1.1E-16 106.1 21.6 194 62-292 2-221 (541)
256 KOG0974 WD-repeat protein WDR6 99.5 1.9E-12 4.1E-17 115.4 19.4 197 123-337 88-289 (967)
257 KOG2315 Predicted translation 99.5 1.5E-11 3.3E-16 102.7 23.2 233 58-339 130-393 (566)
258 KOG1409 Uncharacterized conser 99.5 5.8E-12 1.2E-16 99.0 18.9 237 63-340 34-274 (404)
259 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.9E-10 1.1E-14 92.6 30.4 251 61-344 53-338 (352)
260 COG2706 3-carboxymuconate cycl 99.5 2.6E-09 5.7E-14 85.2 32.1 289 10-339 5-324 (346)
261 PLN02919 haloacid dehalogenase 99.5 1.1E-10 2.4E-15 111.1 28.1 265 59-340 573-892 (1057)
262 COG5170 CDC55 Serine/threonine 99.5 4.9E-12 1.1E-16 98.2 14.9 250 58-335 31-366 (460)
263 COG2706 3-carboxymuconate cycl 99.4 9.1E-10 2E-14 87.7 27.2 259 1-292 45-322 (346)
264 COG4946 Uncharacterized protei 99.4 4.3E-10 9.3E-15 92.5 25.7 197 3-242 274-480 (668)
265 KOG2041 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 100.6 22.9 249 51-336 19-337 (1189)
266 KOG1064 RAVE (regulator of V-A 99.4 3.2E-12 6.9E-17 119.9 11.9 200 121-348 2207-2410(2439)
267 KOG1064 RAVE (regulator of V-A 99.4 3.2E-12 7E-17 119.8 11.5 181 62-294 2217-2401(2439)
268 KOG4714 Nucleoporin [Nuclear s 99.4 1.2E-11 2.5E-16 93.7 11.8 149 135-292 101-255 (319)
269 PF04762 IKI3: IKI3 family; I 99.4 2.6E-09 5.6E-14 100.1 29.7 305 2-338 82-458 (928)
270 KOG2314 Translation initiation 99.3 1.1E-09 2.3E-14 91.9 23.0 288 1-337 255-574 (698)
271 KOG4532 WD40-like repeat conta 99.3 6.9E-10 1.5E-14 84.7 19.6 240 64-337 83-332 (344)
272 KOG2315 Predicted translation 99.3 4.1E-09 8.9E-14 88.5 25.3 279 2-344 41-352 (566)
273 KOG4532 WD40-like repeat conta 99.3 2.1E-09 4.5E-14 82.1 20.1 204 136-348 85-294 (344)
274 PRK04043 tolB translocation pr 99.3 1E-08 2.2E-13 88.5 26.2 196 124-337 189-401 (419)
275 COG5354 Uncharacterized protei 99.3 6.1E-09 1.3E-13 86.6 23.4 299 2-339 39-398 (561)
276 PF15492 Nbas_N: Neuroblastoma 99.3 3.8E-08 8.2E-13 76.4 25.7 234 62-343 6-266 (282)
277 KOG4190 Uncharacterized conser 99.2 1.3E-11 2.8E-16 103.3 6.7 210 115-340 728-952 (1034)
278 PF15492 Nbas_N: Neuroblastoma 99.2 4E-08 8.7E-13 76.3 24.7 240 1-295 3-263 (282)
279 KOG1912 WD40 repeat protein [G 99.2 6.7E-09 1.5E-13 90.7 21.8 243 60-337 22-305 (1062)
280 COG4946 Uncharacterized protei 99.2 2.7E-08 5.9E-13 82.2 24.0 227 62-324 275-507 (668)
281 PLN02919 haloacid dehalogenase 99.2 3.8E-08 8.1E-13 94.2 28.2 168 125-295 685-892 (1057)
282 KOG2314 Translation initiation 99.2 2.4E-08 5.1E-13 84.1 23.1 279 1-337 216-526 (698)
283 PF08450 SGL: SMP-30/Gluconola 99.2 1.5E-07 3.2E-12 76.0 27.5 223 61-325 7-245 (246)
284 TIGR03300 assembly_YfgL outer 99.2 6.9E-08 1.5E-12 83.2 26.5 226 64-345 104-347 (377)
285 KOG3914 WD repeat protein WDR4 99.2 1.3E-09 2.9E-14 87.7 14.5 161 170-344 67-231 (390)
286 PRK04043 tolB translocation pr 99.2 6.6E-09 1.4E-13 89.5 19.6 194 58-294 192-403 (419)
287 KOG3914 WD repeat protein WDR4 99.2 2.3E-09 4.9E-14 86.4 15.1 160 58-243 67-227 (390)
288 KOG2695 WD40 repeat protein [G 99.1 2.9E-10 6.3E-15 89.7 8.9 177 129-315 218-402 (425)
289 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.3E-07 7.2E-12 76.0 26.8 241 3-295 53-334 (352)
290 KOG4714 Nucleoporin [Nuclear s 99.1 2.9E-09 6.3E-14 81.0 13.2 152 62-240 98-255 (319)
291 KOG0309 Conserved WD40 repeat- 99.1 1E-09 2.2E-14 95.1 11.9 222 61-318 32-258 (1081)
292 TIGR03300 assembly_YfgL outer 99.1 1.6E-07 3.6E-12 80.9 25.7 221 65-333 145-376 (377)
293 KOG2695 WD40 repeat protein [G 99.1 8.4E-10 1.8E-14 87.2 9.6 171 172-351 218-391 (425)
294 PF04762 IKI3: IKI3 family; I 99.1 2.3E-06 4.9E-11 80.9 33.9 295 2-338 216-566 (928)
295 KOG4190 Uncharacterized conser 99.0 2.3E-09 5E-14 90.1 11.0 232 64-335 746-987 (1034)
296 KOG1912 WD40 repeat protein [G 99.0 7.1E-08 1.5E-12 84.5 20.2 291 3-341 23-369 (1062)
297 COG5170 CDC55 Serine/threonine 99.0 6.7E-09 1.4E-13 81.2 12.7 210 121-341 25-314 (460)
298 KOG0882 Cyclophilin-related pe 99.0 6.6E-09 1.4E-13 85.1 12.8 249 64-342 19-311 (558)
299 KOG0882 Cyclophilin-related pe 99.0 4.3E-09 9.3E-14 86.2 11.6 211 121-344 8-239 (558)
300 KOG2066 Vacuolar assembly/sort 99.0 2.8E-08 6.1E-13 87.2 16.7 189 121-337 38-234 (846)
301 COG5354 Uncharacterized protei 99.0 1.9E-07 4.1E-12 78.0 19.6 234 58-338 37-308 (561)
302 KOG1645 RING-finger-containing 99.0 4.6E-08 1E-12 79.1 15.0 223 116-347 187-430 (463)
303 KOG1275 PAB-dependent poly(A) 99.0 3.9E-08 8.4E-13 87.6 15.8 183 135-335 147-341 (1118)
304 PF08450 SGL: SMP-30/Gluconola 98.9 2E-06 4.4E-11 69.3 24.4 198 127-344 4-220 (246)
305 KOG1275 PAB-dependent poly(A) 98.9 4E-08 8.6E-13 87.5 15.2 187 64-290 146-341 (1118)
306 PF13360 PQQ_2: PQQ-like domai 98.9 3.7E-06 8.1E-11 67.5 24.2 182 136-341 37-235 (238)
307 KOG1832 HIV-1 Vpr-binding prot 98.9 1.4E-09 3E-14 96.3 3.9 204 111-343 1090-1298(1516)
308 KOG2066 Vacuolar assembly/sort 98.9 6E-07 1.3E-11 79.2 19.2 182 64-293 48-235 (846)
309 KOG1008 Uncharacterized conser 98.8 3.6E-09 7.8E-14 90.4 4.7 194 63-292 68-276 (783)
310 PF00400 WD40: WD domain, G-be 98.8 1.4E-08 3E-13 55.7 5.5 39 155-194 1-39 (39)
311 KOG1645 RING-finger-containing 98.8 6E-08 1.3E-12 78.5 10.8 167 147-326 175-351 (463)
312 PF07433 DUF1513: Protein of u 98.8 9E-06 2E-10 65.4 22.7 228 1-286 10-280 (305)
313 PRK11138 outer membrane biogen 98.8 1E-05 2.2E-10 70.1 25.3 223 65-335 160-393 (394)
314 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.6E-13 55.9 4.7 37 114-151 3-39 (39)
315 PF06977 SdiA-regulated: SdiA- 98.8 4.7E-06 1E-10 65.9 20.9 204 118-333 17-247 (248)
316 KOG2114 Vacuolar assembly/sort 98.8 1.3E-06 2.9E-11 77.7 19.4 204 62-307 32-258 (933)
317 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 65.1 22.3 206 125-343 7-254 (305)
318 KOG1920 IkappaB kinase complex 98.8 2.2E-06 4.8E-11 79.2 20.8 235 60-335 75-364 (1265)
319 KOG2114 Vacuolar assembly/sort 98.8 1.7E-06 3.7E-11 77.1 19.4 201 124-339 27-246 (933)
320 PF00930 DPPIV_N: Dipeptidyl p 98.8 3.4E-05 7.3E-10 65.7 26.9 287 4-326 1-348 (353)
321 KOG2041 WD40 repeat protein [G 98.8 2.1E-07 4.6E-12 81.0 13.3 202 121-337 13-248 (1189)
322 PF11768 DUF3312: Protein of u 98.8 1.7E-06 3.6E-11 74.2 18.5 132 208-351 205-344 (545)
323 PRK11138 outer membrane biogen 98.8 2.2E-05 4.9E-10 68.0 25.8 230 64-344 119-361 (394)
324 KOG1832 HIV-1 Vpr-binding prot 98.7 6E-09 1.3E-13 92.4 3.2 201 60-318 1108-1314(1516)
325 KOG3621 WD40 repeat-containing 98.7 7.4E-06 1.6E-10 71.6 20.0 136 3-175 41-180 (726)
326 COG0823 TolB Periplasmic compo 98.7 6.8E-06 1.5E-10 70.8 19.6 202 121-335 191-399 (425)
327 KOG1008 Uncharacterized conser 98.7 1.2E-08 2.6E-13 87.4 2.7 203 121-336 55-275 (783)
328 PF11768 DUF3312: Protein of u 98.6 8.9E-05 1.9E-09 64.0 24.0 114 123-241 206-331 (545)
329 PF06433 Me-amine-dh_H: Methyl 98.6 0.00014 3.1E-09 59.4 23.3 273 23-344 18-328 (342)
330 KOG3617 WD40 and TPR repeat-co 98.6 7.2E-06 1.6E-10 73.2 17.0 105 61-196 23-131 (1416)
331 COG0823 TolB Periplasmic compo 98.5 1.4E-05 3.1E-10 68.8 17.8 180 146-340 174-362 (425)
332 KOG1920 IkappaB kinase complex 98.5 3.9E-05 8.4E-10 71.4 21.1 152 126-290 199-364 (1265)
333 PF08596 Lgl_C: Lethal giant l 98.5 3.3E-05 7E-10 66.0 19.5 263 60-335 8-334 (395)
334 KOG3617 WD40 and TPR repeat-co 98.5 1.9E-05 4.1E-10 70.7 16.9 110 2-153 22-131 (1416)
335 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00033 7.2E-09 54.3 21.6 103 65-197 63-166 (354)
336 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00014 3.1E-09 56.2 19.0 149 130-292 18-166 (354)
337 PF13360 PQQ_2: PQQ-like domai 98.4 6.7E-05 1.5E-09 60.2 18.7 180 144-341 2-196 (238)
338 PF06433 Me-amine-dh_H: Methyl 98.4 0.00053 1.2E-08 56.2 23.1 247 2-296 42-325 (342)
339 PRK02888 nitrous-oxide reducta 98.4 0.00013 2.9E-09 64.5 20.7 192 130-337 200-405 (635)
340 COG3391 Uncharacterized conser 98.4 0.0003 6.4E-09 60.5 22.1 212 124-343 75-290 (381)
341 cd00216 PQQ_DH Dehydrogenases 98.4 0.0011 2.4E-08 59.2 26.0 235 66-344 111-432 (488)
342 KOG3621 WD40 repeat-containing 98.3 8.1E-06 1.8E-10 71.3 11.1 129 62-218 42-180 (726)
343 PF04053 Coatomer_WDAD: Coatom 98.3 0.00081 1.8E-08 58.4 23.3 215 1-292 38-263 (443)
344 PF08553 VID27: VID27 cytoplas 98.3 0.0002 4.3E-09 65.7 19.5 141 135-290 493-646 (794)
345 PF14655 RAB3GAP2_N: Rab3 GTPa 98.2 0.0023 5E-08 54.8 25.0 90 254-346 301-408 (415)
346 PF04053 Coatomer_WDAD: Coatom 98.2 0.0007 1.5E-08 58.8 21.4 225 58-337 37-263 (443)
347 PF08553 VID27: VID27 cytoplas 98.2 6.3E-05 1.4E-09 68.9 15.2 144 179-336 494-647 (794)
348 KOG2395 Protein involved in va 98.2 0.00028 6E-09 60.2 17.5 144 179-336 347-500 (644)
349 PF02897 Peptidase_S9_N: Proly 98.2 0.0036 7.9E-08 54.9 26.0 248 2-297 130-410 (414)
350 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00016 3.5E-09 48.6 12.6 99 128-234 8-109 (111)
351 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0025 5.5E-08 54.4 23.4 201 122-336 42-315 (353)
352 PRK02888 nitrous-oxide reducta 98.1 0.0004 8.7E-09 61.6 18.0 197 58-292 197-405 (635)
353 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0046 1E-07 53.7 25.4 174 123-318 81-272 (410)
354 PF03178 CPSF_A: CPSF A subuni 98.1 0.003 6.5E-08 53.2 22.6 229 23-288 3-262 (321)
355 KOG4640 Anaphase-promoting com 98.1 2E-05 4.4E-10 68.1 8.8 94 122-218 20-115 (665)
356 COG3391 Uncharacterized conser 98.1 0.0027 5.9E-08 54.7 21.6 208 124-343 32-246 (381)
357 PF03178 CPSF_A: CPSF A subuni 98.1 0.002 4.2E-08 54.3 20.2 176 145-337 2-203 (321)
358 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0037 8.1E-08 54.3 21.4 181 146-342 62-252 (410)
359 PF06977 SdiA-regulated: SdiA- 98.0 0.0006 1.3E-08 54.2 14.6 176 160-342 16-206 (248)
360 PF14583 Pectate_lyase22: Olig 98.0 0.0078 1.7E-07 50.5 27.6 281 2-336 42-381 (386)
361 KOG2444 WD40 repeat protein [G 97.9 2E-05 4.2E-10 59.7 5.4 143 180-337 32-178 (238)
362 KOG4441 Proteins containing BT 97.9 0.003 6.5E-08 57.2 19.4 192 126-338 326-548 (571)
363 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0027 5.9E-08 42.8 13.8 98 216-332 10-110 (111)
364 PF08596 Lgl_C: Lethal giant l 97.9 0.00051 1.1E-08 58.8 13.1 158 167-336 3-173 (395)
365 KOG4640 Anaphase-promoting com 97.8 0.00015 3.3E-09 62.9 9.2 96 207-315 19-115 (665)
366 PF00780 CNH: CNH domain; Int 97.8 0.013 2.9E-07 48.1 26.0 238 63-346 5-265 (275)
367 cd00216 PQQ_DH Dehydrogenases 97.8 0.0086 1.9E-07 53.6 20.1 191 137-343 63-326 (488)
368 PF02897 Peptidase_S9_N: Proly 97.7 0.025 5.5E-07 49.6 29.5 242 60-340 130-408 (414)
369 COG3386 Gluconolactonase [Carb 97.7 0.019 4.1E-07 47.5 23.2 227 61-327 32-277 (307)
370 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.5E-09 39.2 5.0 38 156-194 3-40 (40)
371 PHA02713 hypothetical protein; 97.7 0.0011 2.3E-08 60.1 13.2 186 135-339 304-536 (557)
372 KOG2395 Protein involved in va 97.7 0.003 6.6E-08 54.2 14.6 140 137-290 348-499 (644)
373 PF14583 Pectate_lyase22: Olig 97.7 0.013 2.8E-07 49.2 17.8 200 129-340 42-276 (386)
374 smart00320 WD40 WD40 repeats. 97.6 0.00022 4.7E-09 38.0 5.0 38 251-289 3-40 (40)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.053 1.2E-06 48.9 27.4 150 65-243 120-337 (527)
376 KOG2247 WD40 repeat-containing 97.6 1.3E-05 2.8E-10 67.4 -0.4 210 121-348 33-292 (615)
377 KOG2444 WD40 repeat protein [G 97.6 0.00045 9.8E-09 52.5 7.5 106 65-197 70-178 (238)
378 COG3204 Uncharacterized protei 97.5 0.032 6.9E-07 44.7 19.9 171 120-293 83-265 (316)
379 PHA02713 hypothetical protein; 97.5 0.024 5.2E-07 51.6 19.2 146 135-296 352-538 (557)
380 KOG4441 Proteins containing BT 97.5 0.04 8.8E-07 50.1 19.9 145 135-295 381-550 (571)
381 COG3386 Gluconolactonase [Carb 97.5 0.048 1E-06 45.2 20.1 201 128-347 30-253 (307)
382 KOG2079 Vacuolar assembly/sort 97.4 0.008 1.7E-07 56.1 15.0 102 65-196 99-203 (1206)
383 PF05694 SBP56: 56kDa selenium 97.4 0.061 1.3E-06 45.9 23.0 186 132-325 139-393 (461)
384 COG3204 Uncharacterized protei 97.4 0.015 3.2E-07 46.4 14.5 174 162-338 82-265 (316)
385 PRK13616 lipoprotein LpqB; Pro 97.4 0.057 1.2E-06 49.2 19.6 192 123-331 350-563 (591)
386 PF05694 SBP56: 56kDa selenium 97.3 0.082 1.8E-06 45.2 18.9 99 144-242 221-345 (461)
387 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0016 3.5E-08 36.6 5.6 35 305-341 11-45 (47)
388 PRK13616 lipoprotein LpqB; Pro 97.2 0.038 8.2E-07 50.3 17.1 173 144-336 328-525 (591)
389 PF15390 DUF4613: Domain of un 97.2 0.033 7.2E-07 48.9 15.7 159 166-338 20-188 (671)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.071 1.5E-06 46.0 17.4 99 58-175 6-118 (415)
391 KOG2079 Vacuolar assembly/sort 97.2 0.0024 5.1E-08 59.4 8.7 103 222-336 100-203 (1206)
392 PF07995 GSDH: Glucose / Sorbo 97.2 0.12 2.6E-06 43.7 24.8 249 58-331 6-330 (331)
393 KOG3630 Nuclear pore complex, 97.2 0.01 2.3E-07 55.8 12.6 147 167-324 102-262 (1405)
394 PHA03098 kelch-like protein; P 97.1 0.021 4.6E-07 51.9 14.9 186 135-338 295-513 (534)
395 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0023 5.1E-08 35.9 5.3 35 121-157 10-44 (47)
396 PF15390 DUF4613: Domain of un 97.1 0.037 8.1E-07 48.6 14.3 152 123-291 20-186 (671)
397 COG3490 Uncharacterized protei 97.0 0.066 1.4E-06 42.7 14.2 156 155-322 58-241 (366)
398 COG3490 Uncharacterized protei 97.0 0.12 2.7E-06 41.2 20.0 189 60-290 120-347 (366)
399 PF00780 CNH: CNH domain; Int 97.0 0.15 3.2E-06 42.0 22.0 152 135-299 7-173 (275)
400 PHA03098 kelch-like protein; P 97.0 0.078 1.7E-06 48.3 17.0 148 135-298 343-518 (534)
401 PHA02790 Kelch-like protein; P 96.9 0.057 1.2E-06 48.3 14.8 182 135-338 272-472 (480)
402 KOG3630 Nuclear pore complex, 96.9 0.032 7E-07 52.7 13.1 145 124-278 102-260 (1405)
403 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.42 9.1E-06 43.3 28.2 56 146-201 272-338 (527)
404 KOG4499 Ca2+-binding protein R 96.7 0.18 3.9E-06 39.1 13.8 103 62-183 166-271 (310)
405 TIGR03074 PQQ_membr_DH membran 96.6 0.69 1.5E-05 43.7 22.3 205 137-343 196-484 (764)
406 KOG1916 Nuclear protein, conta 96.6 0.0061 1.3E-07 55.9 6.3 148 20-200 153-327 (1283)
407 PF10168 Nup88: Nuclear pore c 96.5 0.72 1.6E-05 43.3 22.5 80 122-202 84-185 (717)
408 PF05096 Glu_cyclase_2: Glutam 96.5 0.32 6.8E-06 39.0 19.7 186 124-327 46-252 (264)
409 PF14870 PSII_BNR: Photosynthe 96.3 0.52 1.1E-05 39.0 17.7 160 162-333 141-301 (302)
410 KOG1897 Damage-specific DNA bi 96.2 1.1 2.5E-05 42.3 25.7 185 136-339 685-901 (1096)
411 PRK10115 protease 2; Provision 96.1 1.2 2.7E-05 41.9 24.7 199 123-336 127-344 (686)
412 PF14727 PHTB1_N: PTHB1 N-term 96.1 0.81 1.8E-05 39.8 25.5 152 64-240 36-205 (418)
413 KOG2280 Vacuolar assembly/sort 96.0 0.52 1.1E-05 43.1 14.9 178 123-317 84-271 (829)
414 KOG2247 WD40 repeat-containing 96.0 0.0027 5.8E-08 54.1 1.1 136 62-230 43-179 (615)
415 COG5167 VID27 Protein involved 96.0 0.39 8.5E-06 41.8 13.5 141 180-336 482-632 (776)
416 PF05096 Glu_cyclase_2: Glutam 95.9 0.67 1.5E-05 37.2 18.8 176 62-280 53-250 (264)
417 PF10313 DUF2415: Uncharacteri 95.9 0.048 1E-06 29.7 5.3 32 123-154 1-34 (43)
418 PF10647 Gmad1: Lipoprotein Lp 95.9 0.74 1.6E-05 37.3 20.9 157 124-283 25-187 (253)
419 PF12234 Rav1p_C: RAVE protein 95.7 0.65 1.4E-05 42.4 14.6 120 167-291 31-156 (631)
420 PRK10115 protease 2; Provision 95.7 2 4.3E-05 40.6 29.1 234 60-339 133-397 (686)
421 PHA02790 Kelch-like protein; P 95.4 1.9 4.1E-05 38.8 17.2 98 135-241 363-472 (480)
422 KOG4499 Ca2+-binding protein R 95.4 0.96 2.1E-05 35.3 18.3 151 166-326 109-275 (310)
423 PF10313 DUF2415: Uncharacteri 95.4 0.095 2.1E-06 28.6 5.2 33 306-338 1-35 (43)
424 PF14870 PSII_BNR: Photosynthe 95.4 0.56 1.2E-05 38.8 12.2 151 121-288 143-301 (302)
425 TIGR03118 PEPCTERM_chp_1 conse 95.4 1.2 2.7E-05 36.3 20.9 220 123-346 23-289 (336)
426 PF10647 Gmad1: Lipoprotein Lp 95.3 1.2 2.7E-05 36.0 18.8 156 167-332 25-192 (253)
427 PF08728 CRT10: CRT10; InterP 95.2 2.7 5.8E-05 39.1 17.2 114 124-239 102-246 (717)
428 PF12234 Rav1p_C: RAVE protein 95.1 1 2.3E-05 41.1 13.7 112 124-240 31-157 (631)
429 COG4257 Vgb Streptogramin lyas 95.1 1.4 3.1E-05 35.3 15.9 198 123-337 62-263 (353)
430 COG5167 VID27 Protein involved 95.0 0.53 1.2E-05 41.0 11.1 139 138-291 483-632 (776)
431 KOG1897 Damage-specific DNA bi 94.9 3.7 8E-05 39.2 28.3 282 9-345 550-865 (1096)
432 PLN02153 epithiospecifier prot 94.8 2.2 4.8E-05 36.4 15.4 53 283-338 217-286 (341)
433 KOG1916 Nuclear protein, conta 94.6 0.031 6.8E-07 51.5 3.2 185 144-341 110-328 (1283)
434 PF11635 Med16: Mediator compl 94.5 4.6 0.0001 38.6 18.1 185 3-191 110-345 (753)
435 KOG1900 Nuclear pore complex, 94.4 1.7 3.8E-05 42.5 14.0 167 164-338 77-274 (1311)
436 TIGR02604 Piru_Ver_Nterm putat 94.4 3 6.5E-05 36.0 15.3 148 167-325 15-202 (367)
437 PF07995 GSDH: Glucose / Sorbo 94.2 3.1 6.7E-05 35.3 16.8 71 209-286 253-330 (331)
438 KOG2280 Vacuolar assembly/sort 94.1 2.4 5.3E-05 39.0 13.5 181 144-343 63-253 (829)
439 PF07569 Hira: TUP1-like enhan 94.1 0.99 2.2E-05 35.5 10.2 84 207-295 11-99 (219)
440 PLN02153 epithiospecifier prot 93.7 3.9 8.4E-05 34.9 17.3 22 135-156 86-112 (341)
441 PF08728 CRT10: CRT10; InterP 93.7 1.7 3.6E-05 40.4 12.1 114 220-335 113-245 (717)
442 TIGR02604 Piru_Ver_Nterm putat 93.6 4.4 9.5E-05 35.0 20.8 99 123-227 72-201 (367)
443 PF07676 PD40: WD40-like Beta 93.5 0.42 9.2E-06 25.4 5.3 30 304-333 7-38 (39)
444 PF10214 Rrn6: RNA polymerase 93.4 7.9 0.00017 37.2 19.3 133 206-341 77-237 (765)
445 COG4590 ABC-type uncharacteriz 93.3 0.85 1.8E-05 39.2 9.0 167 160-339 215-389 (733)
446 PLN02193 nitrile-specifier pro 93.3 3.6 7.9E-05 36.9 13.6 63 274-338 330-412 (470)
447 KOG4460 Nuclear pore complex, 93.2 5.1 0.00011 35.5 13.4 79 262-343 105-205 (741)
448 PF02333 Phytase: Phytase; In 93.1 5.1 0.00011 34.4 21.9 197 135-338 68-292 (381)
449 TIGR03548 mutarot_permut cycli 93.0 4.6 9.9E-05 34.1 13.3 104 135-241 73-196 (323)
450 KOG2377 Uncharacterized conser 93.0 5.6 0.00012 34.6 17.5 104 121-228 65-173 (657)
451 PF14727 PHTB1_N: PTHB1 N-term 93.0 5.8 0.00013 34.7 31.2 297 6-342 36-366 (418)
452 PF14781 BBS2_N: Ciliary BBSom 92.8 2.5 5.4E-05 29.9 12.2 108 128-240 4-126 (136)
453 COG3823 Glutamine cyclotransfe 92.8 3.6 7.8E-05 31.7 12.4 105 64-199 55-161 (262)
454 COG5276 Uncharacterized conser 92.7 4.8 0.0001 32.8 22.3 153 122-294 86-244 (370)
455 PF12768 Rax2: Cortical protei 92.6 5 0.00011 33.0 15.3 97 144-241 15-125 (281)
456 TIGR02276 beta_rpt_yvtn 40-res 92.6 0.64 1.4E-05 25.1 5.3 41 132-173 1-41 (42)
457 PF07569 Hira: TUP1-like enhan 92.6 1.1 2.3E-05 35.3 8.3 78 62-155 19-97 (219)
458 PF12768 Rax2: Cortical protei 92.6 5.1 0.00011 32.9 13.3 94 187-291 15-123 (281)
459 TIGR03074 PQQ_membr_DH membran 92.4 10 0.00023 36.2 20.4 65 136-202 261-350 (764)
460 KOG2377 Uncharacterized conser 92.3 7.1 0.00015 34.0 13.0 143 186-338 41-187 (657)
461 TIGR03547 muta_rot_YjhT mutatr 92.3 6.6 0.00014 33.6 19.1 41 284-327 291-331 (346)
462 PRK13684 Ycf48-like protein; P 92.0 6.9 0.00015 33.3 19.0 155 165-335 172-330 (334)
463 PF11715 Nup160: Nucleoporin N 91.9 1 2.2E-05 41.3 8.6 39 123-161 215-256 (547)
464 PF12657 TFIIIC_delta: Transcr 91.9 3.2 6.9E-05 31.3 9.9 32 123-154 86-122 (173)
465 KOG1900 Nuclear pore complex, 91.9 3.6 7.8E-05 40.5 12.0 164 121-292 77-273 (1311)
466 PF03022 MRJP: Major royal jel 91.9 6.5 0.00014 32.6 18.8 175 146-324 35-253 (287)
467 KOG4460 Nuclear pore complex, 91.8 7.7 0.00017 34.4 12.8 29 122-151 103-131 (741)
468 TIGR03548 mutarot_permut cycli 91.7 7.3 0.00016 32.9 17.0 22 274-295 173-198 (323)
469 KOG1983 Tomosyn and related SN 91.7 12 0.00025 37.2 15.4 25 269-294 243-267 (993)
470 PLN00033 photosystem II stabil 91.5 8.8 0.00019 33.5 16.7 151 169-333 242-396 (398)
471 COG4257 Vgb Streptogramin lyas 91.2 6.9 0.00015 31.7 17.7 238 58-337 66-306 (353)
472 PRK14131 N-acetylneuraminic ac 91.0 9.8 0.00021 33.0 18.4 50 285-337 314-369 (376)
473 KOG1983 Tomosyn and related SN 91.0 10 0.00022 37.6 14.3 74 257-340 195-268 (993)
474 PF10168 Nup88: Nuclear pore c 90.7 15 0.00033 34.8 20.7 36 120-155 144-181 (717)
475 PF14761 HPS3_N: Hermansky-Pud 90.4 7 0.00015 30.4 13.9 102 136-241 29-165 (215)
476 PLN02193 nitrile-specifier pro 90.3 13 0.00029 33.4 18.2 102 135-241 229-353 (470)
477 COG4880 Secreted protein conta 89.4 13 0.00029 32.1 14.9 183 146-342 407-598 (603)
478 PF09826 Beta_propel: Beta pro 89.4 17 0.00036 33.2 18.5 179 146-338 305-520 (521)
479 PF11715 Nup160: Nucleoporin N 89.2 2.2 4.8E-05 39.1 8.3 69 274-343 159-255 (547)
480 smart00036 CNH Domain found in 89.2 12 0.00026 31.3 23.3 240 64-344 12-278 (302)
481 TIGR02276 beta_rpt_yvtn 40-res 89.1 0.88 1.9E-05 24.5 3.6 31 315-345 1-31 (42)
482 COG3823 Glutamine cyclotransfe 89.1 8.9 0.00019 29.7 14.9 180 135-325 56-248 (262)
483 PRK14131 N-acetylneuraminic ac 88.9 13 0.00029 32.2 12.4 10 232-241 190-199 (376)
484 PF07676 PD40: WD40-like Beta 88.7 2.3 5.1E-05 22.5 5.5 31 258-288 6-38 (39)
485 PF12657 TFIIIC_delta: Transcr 88.4 5.7 0.00012 30.0 8.7 32 261-292 86-122 (173)
486 PRK13684 Ycf48-like protein; P 87.9 16 0.00035 31.1 14.9 150 122-290 172-330 (334)
487 KOG3616 Selective LIM binding 86.7 9.8 0.00021 35.5 10.2 185 152-353 2-210 (1636)
488 PF14781 BBS2_N: Ciliary BBSom 86.7 9.4 0.0002 27.2 12.4 118 214-340 4-129 (136)
489 PF08801 Nucleoporin_N: Nup133 86.6 22 0.00048 31.4 13.3 31 306-337 190-220 (422)
490 KOG2727 Rab3 GTPase-activating 85.4 11 0.00023 36.1 9.8 37 46-83 78-118 (1244)
491 PF10214 Rrn6: RNA polymerase 84.6 40 0.00087 32.6 22.9 169 163-337 77-277 (765)
492 COG5276 Uncharacterized conser 84.5 21 0.00046 29.3 24.1 229 62-336 135-369 (370)
493 COG5308 NUP170 Nuclear pore co 84.3 11 0.00023 36.0 9.4 154 184-342 98-281 (1263)
494 COG4590 ABC-type uncharacteriz 84.3 11 0.00024 32.9 8.9 104 134-241 279-388 (733)
495 smart00564 PQQ beta-propeller 83.9 3.3 7.1E-05 20.8 3.9 25 137-161 8-32 (33)
496 COG1520 FOG: WD40-like repeat 83.7 28 0.00061 30.1 17.9 101 137-241 70-173 (370)
497 PF02333 Phytase: Phytase; In 82.8 31 0.00066 29.9 21.0 197 62-293 65-292 (381)
498 TIGR03606 non_repeat_PQQ dehyd 81.9 37 0.00081 30.2 13.3 53 166-219 30-89 (454)
499 COG5290 IkappaB kinase complex 81.2 40 0.00087 32.0 11.6 97 169-277 250-353 (1243)
500 PF10395 Utp8: Utp8 family; I 81.2 48 0.001 31.0 21.0 237 2-290 34-304 (670)
No 1
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-50 Score=320.35 Aligned_cols=331 Identities=47% Similarity=0.857 Sum_probs=292.1
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+.+.|++++|+||+.+++...+++|+|+.... ++|.||+..++.+|+|++|+.+...-...|+|+|.|+.|..|.||
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 46889999999999999999999999999876 999999999999999999999855555568999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|++-.+.+.|...++...... +.++.+......+|+..|.+++|+....+.||+|+.|.+|++||+.++++...
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~------~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s 281 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKK------KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS 281 (463)
T ss_pred ccccccccccceeechhhhhh------hhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee
Confidence 999888888888777322211 11222233455689999999999998889999999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+..|...|.++.|+|..+.+|++|+.|+++.+.|.|........+...+.|..++|+|...+.+++++.||+|+-+|+|+
T Consensus 282 ~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 282 ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 99999999999999999999999999999999999987777778899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (358)
. .++++++..|..+|.++++++.-+.++++++.|+.|++|++....+..+....-.-+...|+++.|+-.+.
T Consensus 362 ~--------~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 362 P--------GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred C--------CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence 7 48999999999999999999988899999999999999999887765554444444568889999999889
Q ss_pred EEEEccCCeEEEEEccCCCccccccccC
Q 018293 321 LAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 321 l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
++.|+..+.++|||+.+...+.+.|..+
T Consensus 434 la~GG~k~~~~vwd~~~~~~V~kaF~~~ 461 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSPVRKAFGSR 461 (463)
T ss_pred EEecCccceEEEeecccChhHHHhhccc
Confidence 9999999999999999999888877654
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-49 Score=307.57 Aligned_cols=293 Identities=26% Similarity=0.371 Sum_probs=251.0
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
++|+|++..|++|..+. .+.+||............ ....++|++| +|||+.||+|+.||+|++|
T Consensus 121 ~~fsp~g~~l~tGsGD~-----TvR~WD~~TeTp~~t~Kg----H~~WVlcvaw-------sPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDT-----TVRLWDLDTETPLFTCKG----HKNWVLCVAW-------SPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred EEecCCCceEEecCCCc-----eEEeeccCCCCcceeecC----CccEEEEEEE-------CCCcchhhccccCCeEEEe
Confidence 47999999999998776 667777655322222222 3445568888 8999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC----CCcEEEEEEcCCeEEEEECCCCc
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE----FRNILASASADKQVKIWDVAAGK 156 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~ 156 (358)
|..++++.. ..+.+|...|++++|.|- ...+||+++.||.|+|||+..++
T Consensus 185 dpktg~~~g--------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 185 DPKTGQQIG--------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred cCCCCCccc--------------------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 988766544 256789999999999763 14589999999999999999999
Q ss_pred eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc-----------CC------
Q 018293 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD-----------PH------ 219 (358)
Q Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----------~~------ 219 (358)
++..+.+|+.+|+|++|--+| ++++++.|++|++|+...+.....+.+|...|+.++.+ |.
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 999999999999999998665 89999999999999999998888888999999988776 21
Q ss_pred ------------------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 220 ------------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 220 ------------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
++..+++|++|.++.+|+.... .+++..+.+|..-|+.+.|+||+ +++++++.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSF 387 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG-RYIASASF 387 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc-cEEEEeec
Confidence 1236999999999999998776 36888999999999999999999 99999999
Q ss_pred CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293 282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349 (358)
Q Consensus 282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 349 (358)
|+.|++||.++++ .+..+.+|-+.|..++|+.|.+ +|++|+.|.++++|++++.+....+.+|..
T Consensus 388 DkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 388 DKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred ccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 9999999999999 6778899999999999999999 799999999999999999887777666643
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.9e-48 Score=303.75 Aligned_cols=275 Identities=20% Similarity=0.282 Sum_probs=246.7
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC--CceEEecCCCCeEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNFMAVGSMEPAIEI 79 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~v 79 (358)
.|++++..|++|+-++ .+.+|+.........+..|...+ .++.| +|. +.-||+|+.||++++
T Consensus 182 ~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v----~~~~f-------hP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRV----GAAVF-------HPVDSDLNLATASADGTVKL 245 (459)
T ss_pred EeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccce----eeEEE-------ccCCCccceeeeccCCceee
Confidence 5899999999999998 78888877764445555553333 36666 554 678999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
|++++. .+...+.+|...|..++|+|+ +++|+|++.|.+-++||+++++.+.
T Consensus 246 w~~~~e---------------------------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 246 WKLSQE---------------------------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred eccCCC---------------------------cchhhhhcchhhheeeeecCC-CceeeecccccchhhcccccchhhH
Confidence 999753 334467799999999999999 7799999999999999999999999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 239 (358)
...+|...|.+++|++|| .++++|+.|..-+|||++++.++..+.+|..+|..++|+| +++.+++|+.|++++|||++
T Consensus 298 ~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeec
Confidence 999999999999999999 8999999999999999999999998999999999999999 56799999999999999999
Q ss_pred cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 319 (358)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 319 (358)
.. ..+..+.+|..-|+.++|+|..+.+|+|++.|++++||..++.. ++..+.+|.+.|.++..++++++
T Consensus 376 ~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 376 MR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEEeccCCce
Confidence 87 77999999999999999999666999999999999999999988 68889999999999999999995
Q ss_pred EEEEEccCCeEEEEE
Q 018293 320 VLAIGGSKGKLEIWD 334 (358)
Q Consensus 320 ~l~~~~~dg~i~vw~ 334 (358)
+++++.|+++++|.
T Consensus 445 -i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 -IATSSFDRTIKLWR 458 (459)
T ss_pred -EEEeccCceeeecc
Confidence 99999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-47 Score=299.37 Aligned_cols=251 Identities=23% Similarity=0.307 Sum_probs=232.4
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL 138 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l 138 (358)
.||.|++.||||+.+|.++||+..+. .....+.+|...|.++.|+|. ...-+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~---------------------------~~~~~l~gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC---------------------------NLLQTLRGHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc---------------------------ceeEEEeccccceeeEEEccCCCccce
Confidence 46899999999999999999999754 334467799999999999998 46689
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
|+|+.||++++|++.+..++..+.+|...|..++|+|+| ++|++++.|.+-++||++++.......+|...|.+++|+|
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence 999999999999999999999999999999999999999 9999999999999999999999988999999999999999
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 298 (358)
+|. ++++|+.|..-+|||+|++ .++..+.+|..+|.++.|+|+| ..|+||+.|++++|||++..+ .+
T Consensus 314 DGS-L~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~l 380 (459)
T KOG0272|consen 314 DGS-LAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--EL 380 (459)
T ss_pred CCc-eeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--cc
Confidence 654 9999999999999999998 8899999999999999999999 999999999999999999988 58
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 351 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 351 (358)
..+.+|..-|+.++|+|...++|++++.|+++++|...++.+++.+.+|..+.
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV 433 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKV 433 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccce
Confidence 88999999999999999655579999999999999999999999988887653
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-45 Score=285.81 Aligned_cols=279 Identities=24% Similarity=0.369 Sum_probs=241.3
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
++++|||..|+.|+.++ +|.+|+...++. ..+..|.+ .+.+++|-|... .|..++||+++.||.|+
T Consensus 163 vawsPDgk~iASG~~dg-----~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl--~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDG-----SIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHL--VPPCRRLASSSKDGSVR 230 (480)
T ss_pred EEECCCcchhhccccCC-----eEEEecCCCCCcccccccCccc-----ceeEEeeccccc--CCCccceecccCCCCEE
Confidence 47899999999999998 899999766532 23334433 344889977533 57888999999999999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
|||+..+ .....+.+|+.+|+|+.|-.+ .++++|+.|++|++|+...|++.
T Consensus 231 IWd~~~~---------------------------~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 231 IWDTKLG---------------------------TCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred EEEccCc---------------------------eEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHH
Confidence 9999643 334466799999999999866 39999999999999999999999
Q ss_pred eeecccccceeeEEEc-----------CCC------------------------CcEEEEEeCCCcEEEEEcccCC-Ccc
Q 018293 159 LTLEHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDARIST-HSG 202 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~i~d~~~~~-~~~ 202 (358)
+.+++|...|+.++.+ |.+ +..+++|+.|.++.+|+....+ ++.
T Consensus 282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~ 361 (480)
T KOG0271|consen 282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT 361 (480)
T ss_pred HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh
Confidence 9999999999999877 222 1359999999999999987654 566
Q ss_pred ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293 203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 282 (358)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 282 (358)
...+|..-|+.+.|+|+ ..++++++-|..|++||.+++ +.+..+.+|-.+|..++|+.|. ++|++|+.|
T Consensus 362 rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RLlVS~SkD 430 (480)
T KOG0271|consen 362 RMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RLLVSGSKD 430 (480)
T ss_pred hhhchhhheeeEEECCC-ccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cEEEEcCCC
Confidence 67889999999999995 569999999999999999998 8888999999999999999998 999999999
Q ss_pred CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293 283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~ 334 (358)
.++++||+++.+ ....+.+|...|.++.|+|||+ .+++|+.|..+++|.
T Consensus 431 sTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 999999999988 6778999999999999999999 699999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-43 Score=265.01 Aligned_cols=281 Identities=20% Similarity=0.326 Sum_probs=239.4
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+.++++.+.++.++.++ ++-+|+.-+.. ....+|+...|+- ..+|+|.|+++|+|+.|+...||
T Consensus 61 ~~ws~Dsr~ivSaSqDG-----klIvWDs~Ttn----------K~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDG-----KLIVWDSFTTN----------KVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eEecCCcCeEEeeccCC-----eEEEEEccccc----------ceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEE
Confidence 46889999999998888 88999987641 1122334455643 34679999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
++.+.+.. ...+....+.+|++.+.|+.|-++ + .|++++.|.+..+||+++++.+..
T Consensus 125 ~ls~~d~~---------------------g~~~v~r~l~gHtgylScC~f~dD-~-~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 125 PLSTRDAE---------------------GNVRVSRELAGHTGYLSCCRFLDD-N-HILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred eccccccc---------------------ccceeeeeecCccceeEEEEEcCC-C-ceEecCCCceEEEEEcccceEEEE
Confidence 99753221 123344567899999999999987 4 788999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
|.+|.+.|.++.++|..++.+++|+-|+..++||++.+...+.+.+|+..|++++|.|+ +.-|++|++|++.++||+|.
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecC
Confidence 99999999999999944499999999999999999999999989999999999999995 55899999999999999998
Q ss_pred CCCCCCCCCCCccEEE--eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293 241 AKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 318 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 318 (358)
. +.+..+ ..-..+|++++|+..| ++|++|..|.++.+||.-.++ .+..+.+|.+.|+++..+|||.
T Consensus 261 D---------~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 261 D---------QELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred C---------cEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCc
Confidence 7 333333 3335689999999998 999999999999999998887 5667889999999999999999
Q ss_pred eEEEEEccCCeEEEEE
Q 018293 319 FVLAIGGSKGKLEIWD 334 (358)
Q Consensus 319 ~~l~~~~~dg~i~vw~ 334 (358)
.+++|+.|..++||.
T Consensus 329 -av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 -AVATGSWDSTLRIWA 343 (343)
T ss_pred -EEEecchhHheeecC
Confidence 699999999999994
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-42 Score=293.64 Aligned_cols=266 Identities=21% Similarity=0.412 Sum_probs=227.0
Q ss_pred cccCCCceEEecCCCCeEEEEEccccc--CcCceeecCCccccc--ccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEEK--KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 135 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 135 (358)
.|++|+.+||.|..|..|++|.+.... .+....-+...+.+. ................+.||.++|..+.|+|+ .
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~ 463 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-R 463 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-c
Confidence 459999999999999999999997422 111111111111000 00111222334445568899999999999999 7
Q ss_pred cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 215 (358)
++|++++.|++||+|.+.+..++-.+++|..+|..+.|+|-| .+|++++.|++.++|......+.+...+|-+.+.|+.
T Consensus 464 rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~ 542 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS 542 (707)
T ss_pred cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence 899999999999999999999999999999999999999999 9999999999999999999888888899999999999
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
|+| +.+++++|+.|.+|++||+.++ ..++.+.+|.++|.+++|+|+| ++|++|+.||.|.+||+.+++
T Consensus 543 FHP-Ns~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~- 610 (707)
T KOG0263|consen 543 FHP-NSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS- 610 (707)
T ss_pred ECC-cccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc-
Confidence 999 5679999999999999999998 7789999999999999999998 999999999999999999988
Q ss_pred eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
.+..+.+|.+.|.++.|+.+|. +||+|+.|.+|++||+..-...
T Consensus 611 -~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 -LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred -chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence 5777888999999999999999 7999999999999999764443
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4e-43 Score=275.83 Aligned_cols=277 Identities=22% Similarity=0.381 Sum_probs=237.3
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
...|+|+.|++|+..+ ++.+|+...-.-..+...| .+++.+++| +++|.++++|+.+|.|++|+
T Consensus 103 ~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEtilQaH----Ds~Vr~m~w-------s~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETILQAH----DSPVRTMKW-------SHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred EEcCCCceeEeecccc-----cEEEecCceeeHHHHhhhh----cccceeEEE-------ccCCCEEEEcCCCceEEecc
Confidence 4579999999998888 6677776432111222333 333448888 88999999999999999999
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccC-CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
.+-.. +.... .|...|.+++|+|+ ...+++++.||+|+|||....+....
T Consensus 167 pnmnn----------------------------Vk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 167 PNMNN----------------------------VKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERV 217 (464)
T ss_pred cchhh----------------------------hHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhhe
Confidence 86321 22222 45599999999998 67999999999999999999888888
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+.+|.-.|.+++|+|.. .++++++.|..|++||.+++.++.....|...|..+.|+|++ ++|++++.|..+++||+++
T Consensus 218 L~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred eccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH
Confidence 99999999999999998 899999999999999999999999999999999999999966 8999999999999999997
Q ss_pred CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (358)
. +.++.+.+|...++++.|+|-.+.+|.+|+.||.|..|.+...+++.. .-.+|...|++++|+|-|. +
T Consensus 296 m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~-i~~AHd~~iwsl~~hPlGh-i 364 (464)
T KOG0284|consen 296 M---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE-IPPAHDGEIWSLAYHPLGH-I 364 (464)
T ss_pred h---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC-CCcccccceeeeeccccce-e
Confidence 6 788899999999999999998889999999999999999986665333 3457899999999999998 8
Q ss_pred EEEEccCCeEEEEEcc
Q 018293 321 LAIGGSKGKLEIWDTL 336 (358)
Q Consensus 321 l~~~~~dg~i~vw~~~ 336 (358)
|++|+.|.++++|.-.
T Consensus 365 l~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 365 LATGSNDRTVRFWTRN 380 (464)
T ss_pred EeecCCCcceeeeccC
Confidence 9999999999999764
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.4e-41 Score=246.90 Aligned_cols=294 Identities=18% Similarity=0.252 Sum_probs=234.1
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
+.+.+++..+-+ ..|..|+...+.=.....|.+..+. .++- .|+++.||+++. -.||+||+++.
T Consensus 8 d~~viLvsA~YD----hTIRfWqa~tG~C~rTiqh~dsqVN----rLei-------Tpdk~~LAaa~~-qhvRlyD~~S~ 71 (311)
T KOG0315|consen 8 DDPVILVSAGYD----HTIRFWQALTGICSRTIQHPDSQVN----RLEI-------TPDKKDLAAAGN-QHVRLYDLNSN 71 (311)
T ss_pred CCceEEEeccCc----ceeeeeehhcCeEEEEEecCcccee----eEEE-------cCCcchhhhccC-CeeEEEEccCC
Confidence 444554443333 3677788777522222233333222 2222 799999999984 58999999875
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 165 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 165 (358)
... ++..+.+|+..|+++.|..+ ++++++|+.||+++|||++...+.+.++ |.
T Consensus 72 np~-------------------------Pv~t~e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~ 124 (311)
T KOG0315|consen 72 NPN-------------------------PVATFEGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN 124 (311)
T ss_pred CCC-------------------------ceeEEeccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CC
Confidence 432 45567789999999999999 6799999999999999999977777776 77
Q ss_pred cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 244 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 244 (358)
.+|+++..+|+. ..|++|..+|.|++||+.......... .....+.++...|++ .+++++...|+.++|++-....
T Consensus 125 spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~- 201 (311)
T KOG0315|consen 125 SPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQT- 201 (311)
T ss_pred CCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCc-
Confidence 999999999998 789999999999999999876544332 344679999999965 5899999999999999987432
Q ss_pred CCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293 245 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 324 (358)
.....++.+++.|.+.+..+.++|++ ++|++++.|.+++||+..+. ......+.+|...++.++||.||+| |++|
T Consensus 202 --~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTa 276 (311)
T KOG0315|consen 202 --ASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTA 276 (311)
T ss_pred --cccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEec
Confidence 12236677899999999999999998 99999999999999999887 3356677899999999999999997 8899
Q ss_pred ccCCeEEEEEccCCCccccccccCcC
Q 018293 325 GSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 325 ~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
+.|+.+++|++..++.++..-+|+..
T Consensus 277 ssd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred CCCCceeecccccCceeeecCCcccc
Confidence 99999999999999998877766543
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=250.93 Aligned_cols=254 Identities=22% Similarity=0.345 Sum_probs=228.1
Q ss_pred ccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEE
Q 018293 49 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 128 (358)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 128 (358)
+.++.| ++|.+++++++.||.+.|||.-+.+.+..+.+ ....|..+
T Consensus 58 i~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------------------------~s~WVMtC 103 (343)
T KOG0286|consen 58 IYAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------------------------PSSWVMTC 103 (343)
T ss_pred eeeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEEec---------------------------CceeEEEE
Confidence 347777 89999999999999999999987665554332 45789999
Q ss_pred ecCCCCCcEEEEEEcCCeEEEEECCCC------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293 129 AWNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 202 (358)
Q Consensus 129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 202 (358)
+|+|. ++++|+|+.|+...||++.+. +..+.+.+|.+.+.++.|.+|+ .|++++.|.++.+||+++++...
T Consensus 104 A~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 104 AYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred EECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEE
Confidence 99999 779999999999999999855 4566789999999999999864 69999999999999999999998
Q ss_pred ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293 203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 282 (358)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 282 (358)
...+|.+.|.++.+.|.+.+.+++|+-|+..++||+|.+ ...+.+.+|...|++++|.|+| .-+++|++|
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD 250 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDD 250 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCC
Confidence 889999999999999977889999999999999999998 8899999999999999999999 899999999
Q ss_pred CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293 283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
++.++||++..+.+.++....-..+|++++||..|+ +|.+|..|.++.+||.-.++.+..+.+|..+
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred ceeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 999999999998777777666778999999999999 5777899999999999999998888887654
No 11
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-40 Score=245.10 Aligned_cols=291 Identities=22% Similarity=0.322 Sum_probs=238.2
Q ss_pred CcccC-CCcEEEEEE--ecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC-CceEEecCCCCe
Q 018293 1 MTINP-NDAVIVCAR--NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPA 76 (358)
Q Consensus 1 l~~~p-~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~ 76 (358)
++||| -.+.|+++. .-+-.+..++++.+...++......+- ....--+.++| +++ .+.+++++.||+
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~W-------se~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY--DTEDGLFDVAW-------SENHENQVIAASGDGS 84 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee--ecccceeEeee-------cCCCcceEEEEecCce
Confidence 36777 344444442 223335558888887643222222222 22223346666 444 567888899999
Q ss_pred EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc
Q 018293 77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 156 (358)
Q Consensus 77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 156 (358)
++|||+. .+..++..++.|+.+|.++.|++..+..+++++.|++|++|+....+
T Consensus 85 Lrl~d~~--------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 85 LRLFDLT--------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred EEEeccC--------------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 9999964 23446678889999999999999878889999999999999999999
Q ss_pred eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 236 (358)
Q Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~ 236 (358)
.++++.+|...|...+|+|..++++++++.|+.+++||++..........|...+.++.|+..+.+++++|+.|+.|+.|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999999989999999999999999998766665777888999999999999999999999999999
Q ss_pred EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
|+++.+ .++..+.+|.-.|..++|+|....+|++++.|-+++|||...+.. ++.....|...+..+.|++-
T Consensus 219 Dir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 219 DIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-AIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred ehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-hhhhhhccceEEeccccccc
Confidence 999983 788999999999999999998878999999999999999986553 56667789999999999986
Q ss_pred CCeEEEEEccCCeEEEEEc
Q 018293 317 SPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 317 ~~~~l~~~~~dg~i~vw~~ 335 (358)
....+|+.+.|+.++||+.
T Consensus 290 ~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCceeeecccccceeeecc
Confidence 6557999999999999984
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-40 Score=245.09 Aligned_cols=249 Identities=24% Similarity=0.316 Sum_probs=213.5
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
+.+.+++++.|.++.+|++...+. +...+...+.||+..|..+..+++ +++.++++.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~----------------------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~sw 83 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDI----------------------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASW 83 (315)
T ss_pred CCceEEEcccceEEEEEEeccCcc----------------------ccCceeeeeeccceEecceEEccC-CceEEeccc
Confidence 467899999999999999975322 334556678899999999999999 779999999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-cCCeeeEEEcCCC-C
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E 221 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~ 221 (358)
|+++++||+.+++..+.|.+|...|.+++|+++. +.+++|+.|.+|++|++............ ...|.|+.|+|+. +
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999999999999999999999999999 88999999999999998766544423332 7789999999974 6
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 301 (358)
.++++++.|++|++||+++. +....+.+|.+.++.++++||| .+.++|+.||.+.+||++.++ .++.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl 230 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL 230 (315)
T ss_pred cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence 68999999999999999987 7788899999999999999999 899999999999999999998 45554
Q ss_pred CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 351 (358)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 351 (358)
.|...|.+++|+|+.. .|+. ..+..|+|||+.++..+.++-....++
T Consensus 231 -~a~~~v~sl~fspnry-wL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 231 -EAFDIVNSLCFSPNRY-WLCA-ATATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred -cCCCeEeeEEecCCce-eEee-ccCCceEEEeccchhhhhhcccccccc
Confidence 4678999999999975 3544 445569999999999888766555444
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-40 Score=253.36 Aligned_cols=276 Identities=23% Similarity=0.406 Sum_probs=241.4
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCC-CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
-|+|+..+++++..+. .+++|+..++. +..+..|.+... .++|+..|++||+++.|-.+++|
T Consensus 115 ~~hp~~~~v~~as~d~-----tikv~D~~tg~~e~~LrGHt~sv~------------di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDA-----TIKVFDTETGELERSLRGHTDSVF------------DISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred eeccCceEEEEecCCc-----eEEEEEccchhhhhhhhcccccee------------EEEEecCccEEEecCCccchhhe
Confidence 4789999999986554 55666655542 344555554322 44558899999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|.++ .......+.+|+..|.++.|-|. +.++++++.|.+|+.|++.++-++.+
T Consensus 178 d~~~--------------------------~~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 178 DFDT--------------------------FFRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred eHHH--------------------------HHHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEecccceeEEe
Confidence 9974 23344566789999999999999 57999999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC--------------CCCeEEE
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--------------AEHSFVV 226 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~ 226 (358)
+.+|...|..++.+.|| .++++++.|.++++|-+.+.++......|+.++.+++|.|. +..++.+
T Consensus 231 ~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred ccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 99999999999999999 99999999999999999999888888899999999999873 2358999
Q ss_pred EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc
Q 018293 227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 306 (358)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 306 (358)
++.|++|++||+.++ .++..+.+|...|..++|+|.| +||+++.+|+++++||+++.+ +......|..
T Consensus 310 ~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--cmk~~~ah~h 377 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--CMKTLEAHEH 377 (406)
T ss_pred ecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--eeeccCCCcc
Confidence 999999999999998 8999999999999999999987 999999999999999999988 7888889999
Q ss_pred eeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 307 AVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 307 ~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.++++.|+.+..| +++|+-|.++++|..
T Consensus 378 fvt~lDfh~~~p~-VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 378 FVTSLDFHKTAPY-VVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEEecCCCCce-EEeccccceeeeeec
Confidence 9999999999995 899999999999974
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4e-38 Score=236.15 Aligned_cols=233 Identities=21% Similarity=0.363 Sum_probs=190.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
++||++.++++.|+++++||+.+++. ...+.+|...|.+++|+++ ...+++|
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~---------------------------t~~f~GH~~dVlsva~s~d-n~qivSG 123 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGES---------------------------TRRFVGHTKDVLSVAFSTD-NRQIVSG 123 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcE---------------------------EEEEEecCCceEEEEecCC-CceeecC
Confidence 79999999999999999999986533 3356789999999999999 6799999
Q ss_pred EcCCeEEEEECCCCceeeeeccc--ccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
+.|.+|++|++... +..++..+ .+-|.|++|+|.. +.++++++.|+++++||+++-+......+|.+.++.++++|
T Consensus 124 SrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred CCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC
Confidence 99999999998754 44444333 7899999999984 47999999999999999999998888889999999999999
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 298 (358)
|| .+.++|+.||.+.+||++.+ +.++.+ .|...|.+++|+|+. +.++...+..|+|||+.+...+..
T Consensus 203 DG-slcasGgkdg~~~LwdL~~~---------k~lysl-~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 203 DG-SLCASGGKDGEAMLWDLNEG---------KNLYSL-EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred CC-CEEecCCCCceEEEEEccCC---------ceeEec-cCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhh
Confidence 65 48999999999999999987 555555 467889999999975 444555566799999998763221
Q ss_pred EecC--C-----CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 299 ASRN--P-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 299 ~~~~--~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.... + ..-...+++|+++|+. |.+|-.|+.|++|.+..
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~t-Lf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQT-LFAGYTDNVIRVWQVAK 314 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcE-EEeeecCCcEEEEEeec
Confidence 1111 1 1234667899999995 77899999999998753
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-38 Score=254.66 Aligned_cols=248 Identities=26% Similarity=0.478 Sum_probs=221.9
Q ss_pred CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293 46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 125 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 125 (358)
..-..+++| +.+|.+||+|+.||.++||+.+ ..+...+..|+++|
T Consensus 235 nkdVT~L~W-------n~~G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI 279 (524)
T KOG0273|consen 235 NKDVTSLDW-------NNDGTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPI 279 (524)
T ss_pred cCCcceEEe-------cCCCCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCce
Confidence 344567777 8899999999999999999986 33444667899999
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
.++.|+.. +++|++++.|+++.+||..+++..+.+..|..+-..+.|-.+. .|++++.|+.|+++.+....+.....
T Consensus 280 ~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~ 356 (524)
T KOG0273|consen 280 FSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFI 356 (524)
T ss_pred EEEEEcCC-CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeee
Confidence 99999999 6799999999999999999999999999898887889997764 69999999999999999999988888
Q ss_pred eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC--------cEEE
Q 018293 206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--------NLLA 277 (358)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--------~~l~ 277 (358)
+|.++|.++.|+|. +.+|++++.|+++++|.+... .....+.+|...|..+.|+|.|+ ..++
T Consensus 357 GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 357 GHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred cccCceEEEEECCC-CceEEEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 99999999999995 559999999999999999876 77888999999999999999653 4789
Q ss_pred EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
+++.|++|++||+..+. ++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|++++++.++..
T Consensus 427 sas~dstV~lwdv~~gv--~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGV--PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred EeecCCeEEEEEccCCc--eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEee
Confidence 99999999999999998 57778899999999999999996 999999999999999998877653
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-39 Score=254.98 Aligned_cols=240 Identities=20% Similarity=0.336 Sum_probs=213.0
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.|.|+|+.|++|+..|.+.+|+..+ ......++.|..+|.++.|+++ +.+++
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr~m~ws~~-g~wmi 154 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVRTMKWSHN-GTWMI 154 (464)
T ss_pred EEcCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccceeEEEccC-CCEEE
Confidence 3489999999999999999999853 3344566789999999999999 77999
Q ss_pred EEEcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
+|+.+|.|++|+..-. .++.++.| ...|++++|+|.+ ..|++++.||+|+|||....+....+.+|.-.|.+++|+|
T Consensus 155 SgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP 232 (464)
T ss_pred EcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC
Confidence 9999999999997644 45555555 4999999999987 8899999999999999998888777889999999999999
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 298 (358)
. ..++++++.|..|++||.+++ .++.++..|...|..+.|+|++ ++|++++.|..+++||+++.+ .+
T Consensus 233 ~-kgLiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk--El 299 (464)
T KOG0284|consen 233 T-KGLIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK--EL 299 (464)
T ss_pred c-cceeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH--HH
Confidence 5 559999999999999999998 8899999999999999999999 999999999999999999665 57
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
+.+.+|...++++.|+|-...+|++|+.||.|..|.+...+.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 78889999999999999887799999999999999998544443
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-37 Score=228.21 Aligned_cols=280 Identities=23% Similarity=0.369 Sum_probs=219.0
Q ss_pred CcccCC-CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 1 MTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
++++|. |++|++++.+. .+.+|+...+.......+-+......+..++| +|.|++||+|+.|.++.|
T Consensus 20 ~awhp~~g~ilAscg~Dk-----~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-------sp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDK-----AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-------SPHGRYLASASFDATVVI 87 (312)
T ss_pred EEeccCCceEEEeecCCc-----eEEEEecCCCCcEEEEEeccccchheeeeeee-------cCCCcEEEEeeccceEEE
Confidence 467888 88888887776 77888877432222221111122222334545 899999999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---c
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---K 156 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~ 156 (358)
|.-.. ........+.||+..|.|++|+++ +++||+++.|+.|.||.+..+ +
T Consensus 88 w~k~~-------------------------~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 88 WKKED-------------------------GEFECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eecCC-------------------------CceeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEE
Confidence 98653 234556688899999999999999 679999999999999998744 6
Q ss_pred eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC---CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 233 (358)
Q Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i 233 (358)
+...++.|...|..+.|+|.. .+|++++.|++|++|+-... .+...+..+...|.+++|++.+ ..+++++.|+++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv 219 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTV 219 (312)
T ss_pred EEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcce
Confidence 788899999999999999988 89999999999999987732 2345566788899999999965 689999999999
Q ss_pred EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC--c---eeeEecCCCCcee
Q 018293 234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P---SCIASRNPKAGAV 308 (358)
Q Consensus 234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~---~~~~~~~~~~~~v 308 (358)
+||-.... ....|..++..+.|. + ..|++++.|+.|++|...... + ........|...|
T Consensus 220 ~Iw~~~~~-------------~~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 220 SIWRLYTD-------------LSGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred EeeeeccC-------------cchhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 99987643 113467889999999 4 489999999999999876531 1 1112345688899
Q ss_pred EEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 309 FSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
++++|.|....+|++|+.||.|++|.+.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999655579999999999999874
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.1e-38 Score=243.01 Aligned_cols=248 Identities=25% Similarity=0.430 Sum_probs=223.3
Q ss_pred ceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293 51 CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW 130 (358)
Q Consensus 51 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 130 (358)
.+.|+. ++++.|.+++|++|+.|++|+|||+.+++ +...+.||...|..+++
T Consensus 150 HlgWVr-~vavdP~n~wf~tgs~DrtikIwDlatg~---------------------------LkltltGhi~~vr~vav 201 (460)
T KOG0285|consen 150 HLGWVR-SVAVDPGNEWFATGSADRTIKIWDLATGQ---------------------------LKLTLTGHIETVRGVAV 201 (460)
T ss_pred ccceEE-EEeeCCCceeEEecCCCceeEEEEcccCe---------------------------EEEeecchhheeeeeee
Confidence 345665 57789999999999999999999997643 44467789999999999
Q ss_pred CCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCC
Q 018293 131 NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD 210 (358)
Q Consensus 131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 210 (358)
|+. ..++++++.|+.|+.||++..+.++.+.+|-+.|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+
T Consensus 202 S~r-HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 202 SKR-HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred ccc-CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 998 6799999999999999999999999999999999999999998 89999999999999999999999888899999
Q ss_pred eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293 211 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 211 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~ 290 (358)
|..+.+.|.++ .+++|+.|++|++||++.+ +....+..|...+.+++.+|.. ..+++++.| .|+-|++
T Consensus 280 V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 280 VASVMCQPTDP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKL 347 (460)
T ss_pred ceeEEeecCCC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccC
Confidence 99999999665 7999999999999999998 7788899999999999999976 788888876 5999999
Q ss_pred CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
..+. .+..+.+|..-|++++...|+ ++++|+++|.+.+||.+++...++.
T Consensus 348 p~g~--f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 348 PEGE--FLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred Cccc--hhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence 9988 455688999999999999998 5888999999999999998876543
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=233.56 Aligned_cols=251 Identities=21% Similarity=0.338 Sum_probs=214.5
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
+|+|+|.+||+|+.|..|.+|++.... .....+.+|.++|..+.|.++ ++.++
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHsgAVM~l~~~~d-~s~i~ 106 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHSGAVMELHGMRD-GSHIL 106 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccc--------------------------cceeeeccccceeEeeeeccC-CCEEE
Confidence 459999999999999999999975321 122345589999999999999 67999
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
+++.|.+|+.||+++|+.++.+++|..-++++.-+.-|..++.+++.|+++++||+++..... .......++++.|..+
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDT 185 (338)
T ss_pred EecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEeccc
Confidence 999999999999999999999999999999999777787889999999999999999887766 4556778999999985
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc--ee
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SC 297 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~ 297 (358)
+ ..+.+|+-|+.|++||++.. ...+.+.+|..+|+.+..+|+| .++++-+.|.++++||++...+ .+
T Consensus 186 s-~qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 186 S-DQVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred c-cceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCce
Confidence 4 47999999999999999987 8899999999999999999998 8999999999999999986432 23
Q ss_pred eEecCCC----CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293 298 IASRNPK----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 298 ~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
+..+.+| ......++|+|++.+ +.+|+.|..+++||......+...-++...
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCccee
Confidence 4455544 234567899999996 888999999999999887877777776654
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.4e-38 Score=265.86 Aligned_cols=196 Identities=23% Similarity=0.360 Sum_probs=182.3
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
..+|+|+.++|+++++|+++|+|.+.+... ...+.||..+|+++.|+|. +.+
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~---------------------------~V~y~GH~~PVwdV~F~P~-GyY 507 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---------------------------LVIYKGHLAPVWDVQFAPR-GYY 507 (707)
T ss_pred eeeecccccceeeccCCcceeeeeccccee---------------------------EEEecCCCcceeeEEecCC-ceE
Confidence 446799999999999999999999986433 3355689999999999999 789
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
+||++.|++.++|.....++++.+.+|-+.|.|+.|+|+. .++++|+.|.++++||+.++..++...+|.++|.+++|+
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999899999999999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
| .+.++++|+.||.|.+||+.++ ..+..+.+|.+.|.++.|+.+| ..|++|+.|.+|++||+...
T Consensus 587 p-~Gr~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 587 P-CGRYLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred C-CCceEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhh
Confidence 9 5669999999999999999998 7888999999999999999999 99999999999999998653
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=230.67 Aligned_cols=278 Identities=18% Similarity=0.274 Sum_probs=232.7
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
++|+|+|..|++|+.+. +|.+|+...+.+ ..+..|.. .++.+.| .+|++.+++++.|.+|+
T Consensus 53 ~~F~P~gs~~aSgG~Dr-----~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~-------~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDR-----AIVLWNVYGDCENFWVLKGHSG-----AVMELHG-------MRDGSHILSCGTDKTVR 115 (338)
T ss_pred EEECCCCCeEeecCCcc-----eEEEEeccccccceeeeccccc-----eeEeeee-------ccCCCEEEEecCCceEE
Confidence 36999999999999998 889998554321 12222322 2335555 78999999999999999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
.||+.+++..+ ..++|.+-|+++.-+.-|..++.+++.|+++++||+++...+
T Consensus 116 ~wD~~tG~~~r---------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 116 GWDAETGKRIR---------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred EEecccceeee---------------------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 99998876654 456799999999977777789999999999999999998888
Q ss_pred eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
+++. ...+++++.|..++ ..+.+|+-|+.|++||++.+.......+|..+|+.+..+|++ .++.+-+.|.++++||+
T Consensus 169 ~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 169 KTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDV 245 (338)
T ss_pred hccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-CccccccccceEEEEEe
Confidence 8886 46789999999988 779999999999999999999988899999999999999965 48999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEeecC----CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293 239 RTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 314 (358)
+...... +++..+.+|. .....++|+|++ ..+.+|+.|..+++||..... .+..+.+|.+.|+++.|+
T Consensus 246 rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 246 RPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred cccCCCC-----ceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCcceeEEEeeec
Confidence 9764422 4466666653 335678999998 899999999999999998877 688899999999999999
Q ss_pred CCCCeEEEEEccCCeEEEEE
Q 018293 315 EDSPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~ 334 (358)
|..+ ++.+++.|.+|++=+
T Consensus 318 p~e~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 318 PTEP-IILSCSSDKTIYLGE 336 (338)
T ss_pred CCCc-EEEEeccCceeEeec
Confidence 9999 688899999998744
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.3e-37 Score=264.97 Aligned_cols=278 Identities=21% Similarity=0.335 Sum_probs=223.8
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCC--CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
+.|+|+|+.++.+..++ .+.+|+..... .......| ...+.++ +|+|+++++++|+.|++|+
T Consensus 165 ~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~~~~~~l~~h----~~~v~~~-------~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDG-----LIRIWKLEGIKSNLLRELSGH----TRGVSDV-------AFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred EEEcCCCCeEEEccCCC-----cEEEeecccccchhhcccccc----ccceeee-------EECCCCcEEEEecCCceEE
Confidence 36899999988887776 55666653322 11111222 2222344 4599999999999999999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
|||+.. .......+.+|...|++++|+|++ +++++|+.|++|++||++++++.
T Consensus 229 iwd~~~--------------------------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 229 IWDLKD--------------------------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred EeeccC--------------------------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE
Confidence 999932 233445677999999999999995 89999999999999999999999
Q ss_pred eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC--ccceeeecC--CeeeEEEcCCCCCeEEEEecCCeEE
Q 018293 159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGTIK 234 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~dg~i~ 234 (358)
..+.+|.+.|++++|++++ +++++++.|+.|++||+.++.. ......+.. .++++.|+|+ +.++++++.|+.++
T Consensus 282 ~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~-~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN-GKYLLSASLDRTLK 359 (456)
T ss_pred EeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC-CcEEEEecCCCeEE
Confidence 9999999999999999999 8999999999999999999883 333333333 5999999995 56999999999999
Q ss_pred EEEcccCCCCCCCCCCCccEEEeecCCc---eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-CceeEE
Q 018293 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKA---VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFS 310 (358)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~ 310 (358)
+||++.. .......+|... +.+...++.+ .++++|+.|+.|++||+.++. .+..+.+| ...+..
T Consensus 360 ~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~~~~~~~ 427 (456)
T KOG0266|consen 360 LWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGHSKAAVSD 427 (456)
T ss_pred EEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCCCCCceec
Confidence 9999987 667777777664 4444556666 899999999999999999876 46667788 889999
Q ss_pred EEEcCCCCeEEEEEc--cCCeEEEEEcc
Q 018293 311 VAFSEDSPFVLAIGG--SKGKLEIWDTL 336 (358)
Q Consensus 311 ~~~~~~~~~~l~~~~--~dg~i~vw~~~ 336 (358)
+.++|... ++++++ .|+.+++|...
T Consensus 428 ~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 428 LSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCCcC-eeeecCcCCCceEEEecCC
Confidence 99999998 588887 78999999754
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=254.39 Aligned_cols=283 Identities=23% Similarity=0.390 Sum_probs=230.8
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecC-CcccceeeecCCccccCCCceEEecCCC-CeEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AFPLCMAWLDCPLKDREKGNFMAVGSME-PAIEI 79 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~v 79 (358)
.|+|.-++|++|-+.+ ...+|+...- ...|...+. ..+..+.| +..|+.||.|+.. |.+-|
T Consensus 272 ~fH~~t~~lvvgFssG-----~f~LyelP~f-----~lih~LSis~~~I~t~~~-------N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSG-----EFGLYELPDF-----NLIHSLSISDQKILTVSF-------NSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred eccCCceEEEEEecCC-----eeEEEecCCc-----eEEEEeecccceeeEEEe-------cccCCEEEEcCCccceEEE
Confidence 5788899999998877 6667776542 223333333 34444444 7889999998865 89999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
|++.+.. .+...++|...+++++++|| ++++|+|+.||.|+|||...+-|..
T Consensus 335 weWqsEs---------------------------YVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 335 WEWQSES---------------------------YVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred EEeeccc---------------------------eeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEeccCceEEE
Confidence 9997533 33456789999999999999 7799999999999999999999999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCC-eEEEEE
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG-TIKGFD 237 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg-~i~i~d 237 (358)
+|..|+..|+.+.|+..+ +.+++++.||+|+.||+......+... ..+....|++.+|.+ .++++|+.|. .|.+|+
T Consensus 387 TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG-elV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG-ELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC-CEEEeeccceEEEEEEE
Confidence 999999999999999999 899999999999999998776654332 234457789999954 4777777776 599999
Q ss_pred cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
+.++ +.+..+.+|.++|.+++|+|.+ ..|++++.|.+|++||+-.... .+.++ .+...+..++|+|+|
T Consensus 465 ~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl-~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 465 VQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETL-EIRSDVLAVSFRPDG 532 (893)
T ss_pred eecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeE-eeccceeEEEEcCCC
Confidence 9998 8889999999999999999998 8999999999999999976531 22233 345679999999999
Q ss_pred CeEEEEEccCCeEEEEEccCCCccccc
Q 018293 318 PFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 318 ~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
+. ++++..||.|.+||...+.++...
T Consensus 533 ~e-laVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 533 KE-LAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred Ce-EEEEEecceEEEEEhhhceeeccc
Confidence 95 899999999999999988776443
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-36 Score=240.91 Aligned_cols=275 Identities=20% Similarity=0.354 Sum_probs=234.4
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|+.+-+|++|++|..++ .+.+|+.... ....+..| ..+++.++| +.+|+||++++.||++.+|
T Consensus 241 L~Wn~~G~~LatG~~~G-----~~riw~~~G~-l~~tl~~H----kgPI~slKW-------nk~G~yilS~~vD~ttilw 303 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDG-----EARIWNKDGN-LISTLGQH----KGPIFSLKW-------NKKGTYILSGGVDGTTILW 303 (524)
T ss_pred EEecCCCCeEEEeecCc-----EEEEEecCch-hhhhhhcc----CCceEEEEE-------cCCCCEEEeccCCccEEEE
Confidence 45678899999998887 8888887663 33344444 344567777 8899999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|..++...+.+. -|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.+
T Consensus 304 d~~~g~~~q~f~---------------------------~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 304 DAHTGTVKQQFE---------------------------FHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKT 354 (524)
T ss_pred eccCceEEEeee---------------------------eccCCccceEEecC--ceEeecCCCceEEEEEecCCCccee
Confidence 997765554332 36666678889766 3799999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC--------CCeEEEEecCCe
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--------EHSFVVSLEDGT 232 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~dg~ 232 (358)
+.+|.++|.++.|+|.+ .+|++++.|+++++|..........+..|...|..+.|+|.+ +..+++++.|++
T Consensus 355 ~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred eecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 99999999999999999 999999999999999998888877788899999999998864 357899999999
Q ss_pred EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEE
Q 018293 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 312 (358)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 312 (358)
|++||+..+ .+++.+..|+.+|.+++|+|++ .++++|+.||.|.+|+.++++ .+....+ .+.|..++
T Consensus 434 V~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~~~Ifel~ 500 (524)
T KOG0273|consen 434 VKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQG-TGGIFELC 500 (524)
T ss_pred EEEEEccCC---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeecC-CCeEEEEE
Confidence 999999998 8899999999999999999999 999999999999999999998 3444443 46699999
Q ss_pred EcCCCCeEEEEEccCCeEEEEEcc
Q 018293 313 FSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 313 ~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
|+.+|.+ +..+-.||.+++.|++
T Consensus 501 Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 501 WNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred EcCCCCE-EEEEecCCCceEEEec
Confidence 9999985 6667789999999875
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-37 Score=239.03 Aligned_cols=246 Identities=21% Similarity=0.290 Sum_probs=222.3
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
-|+|+-..+++++.|++|++||..+++.. ..++||.+.|..|+|+.. +.+++
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------------~~LrGHt~sv~di~~~a~-Gk~l~ 166 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELE---------------------------RSLRGHTDSVFDISFDAS-GKYLA 166 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhh---------------------------hhhhccccceeEEEEecC-ccEEE
Confidence 36899999999999999999999876553 367799999999999998 67999
Q ss_pred EEEcCCeEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 140 SASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 140 s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
+++.|-.+.+||..+ .++++.+.+|...|.+++|-|.| .++++++.|.+|+.|++.++.++....+|...+..++.+.
T Consensus 167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 999999999999987 47788888999999999999999 8999999999999999999999998889999999999998
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC--------------CCcEEEEEeCCCc
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKM 284 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------------~~~~l~~~~~dg~ 284 (358)
| +.++++++.|.++++|-+.+. .+...+..|..+|-+++|.|. +..++.+++.|++
T Consensus 246 D-Gti~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 246 D-GTIIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred C-eeEEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 5 569999999999999999987 677788899999999999873 2358999999999
Q ss_pred EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
|++||+.++. ++.++.+|.+.|..++|+|.|+| |+++.+|+++++||+++++++.....+
T Consensus 316 Ik~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 316 IKIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EEEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccCCC
Confidence 9999999997 89999999999999999999997 888999999999999999988765433
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-35 Score=238.18 Aligned_cols=312 Identities=16% Similarity=0.266 Sum_probs=239.7
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
.|+|+|..++++.+++ ++++||-..++...-+. .......-++.+.| +||++.++|++.|.+++|||
T Consensus 197 RysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~-~~~aHkGsIfalsW-------sPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELE-DSDAHKGSIFALSW-------SPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred EECCCCCeEEEecCCc-----cEEEEcCCCccEEEEec-CCCCccccEEEEEE-------CCCCceEEEecCCceEEEEE
Confidence 5899999999999999 99999988863222222 13344555667777 89999999999999999999
Q ss_pred cccccCcCceeecCCccccccc--c--------------cccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC
Q 018293 82 LDVIDEVQPHVILGGIDEEKKK--K--------------KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 145 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 145 (358)
+.+...+.....-...++.... | .-...........+.||...|+++..+|+ +.+|++|+.||
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG 342 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-GKTIYSGSYDG 342 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-CCEEEeeccCc
Confidence 9988766554443332222110 0 00011123367788899999999999999 58999999999
Q ss_pred eEEEEECCCCceeeee-cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc---------------------
Q 018293 146 QVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--------------------- 203 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------- 203 (358)
.|.-|+..++..-+.. +.|...|.+++-+..+ .+++.+.|.++++.++........
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 9999999988765443 6799999999988755 488899999999997743211000
Q ss_pred ----------ee--------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE
Q 018293 204 ----------KW--------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 265 (358)
Q Consensus 204 ----------~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (358)
+. .......+++++|+ +..+++|+.||.|++|.+..... ........|.++|++
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDEL-------KEEAKLLEHRAAITD 492 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcc-------cceeeeecccCCceE
Confidence 00 01123567899994 56999999999999999987632 344567789999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 266 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 266 i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
++++|++ .+|++|...+.+.+||+.+.+. ......-|...|.+++|+|+.. ++|+|+.|-.|.||++.....
T Consensus 493 vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 493 VAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhh
Confidence 9999999 9999999999999999999885 4444556899999999999999 799999999999999986543
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.4e-35 Score=271.04 Aligned_cols=288 Identities=18% Similarity=0.225 Sum_probs=219.5
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCC----CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 76 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 76 (358)
++|+|+++++++|+.++ .+.+|+.... ........ .........++.|.+ +++.+|++++.||+
T Consensus 489 i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~------~~~~~las~~~Dg~ 556 (793)
T PLN00181 489 IGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVV-ELASRSKLSGICWNS------YIKSQVASSNFEGV 556 (793)
T ss_pred EEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceE-EecccCceeeEEecc------CCCCEEEEEeCCCe
Confidence 47899999999998776 6777775321 00000000 001122334566632 35789999999999
Q ss_pred EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc
Q 018293 77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 156 (358)
Q Consensus 77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 156 (358)
|++||+.+++. ...+.+|...|++++|+|.++.+|++|+.||+|++||+.++.
T Consensus 557 v~lWd~~~~~~---------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 557 VQVWDVARSQL---------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred EEEEECCCCeE---------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999975332 234567999999999998547799999999999999999998
Q ss_pred eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235 (358)
Q Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 235 (358)
.+..+..+ ..+.++.|++..+.++++|+.||.|++||++.... ......|...|.++.|.+ +..+++++.|+.|++
T Consensus 610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~~iki 686 (793)
T PLN00181 610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD--SSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC--CCEEEEEECCCEEEE
Confidence 88888754 67999999665448999999999999999987653 344557888999999974 458999999999999
Q ss_pred EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-----------cCCC
Q 018293 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-----------RNPK 304 (358)
Q Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~ 304 (358)
||++..... ....++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+.....+..... ...+
T Consensus 687 Wd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~ 762 (793)
T PLN00181 687 WDLSMSISG---INETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA 762 (793)
T ss_pred EeCCCCccc---cCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence 999854210 0124567888999999999999998 899999999999999987654322221 1334
Q ss_pred CceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
...|.+++|+|++. .|++|+.||.|+||++
T Consensus 763 ~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 763 SQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred CcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 56799999999999 5889999999999997
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.6e-35 Score=240.85 Aligned_cols=275 Identities=30% Similarity=0.505 Sum_probs=223.4
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
++++|+++.++++..++ .+++|+............|. ....++.| +++++++++++.||.|++|
T Consensus 15 ~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~----~~i~~~~~-------~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 15 VAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHT----GPVRDVAA-------SADGTYLASGSSDKTIRLW 78 (289)
T ss_pred EEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCC----cceeEEEE-------CCCCCEEEEEcCCCeEEEE
Confidence 46899999999997766 77777766542222222221 11224444 7888999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
++.+.+.. ..+..|...|.++.|+++ +.++++++.|+.+.+||+.+++....
T Consensus 79 ~~~~~~~~---------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 79 DLETGECV---------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred EcCcccce---------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEE
Confidence 99753222 233468889999999998 67888888899999999998988888
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+..|...+.+++|+|++ .++++++.++.+++||++..+.......+...+.++.|+|++ ..+++++.++.+++||++.
T Consensus 131 ~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 131 LRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred eccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC
Confidence 88899999999999997 788888889999999999877776666777799999999965 4777888899999999987
Q ss_pred CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (358)
. .....+..|...+.++.|+|++ .++++++.||.|++||+.+++ ....+..|...+.+++|+|+++ .
T Consensus 209 ~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~ 275 (289)
T cd00200 209 G---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGK-R 275 (289)
T ss_pred C---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEEECCCCC-E
Confidence 6 5566666788899999999986 888888889999999999876 4555668888999999999998 5
Q ss_pred EEEEccCCeEEEEE
Q 018293 321 LAIGGSKGKLEIWD 334 (358)
Q Consensus 321 l~~~~~dg~i~vw~ 334 (358)
+++++.||.|++|+
T Consensus 276 l~~~~~d~~i~iw~ 289 (289)
T cd00200 276 LASGSADGTIRIWD 289 (289)
T ss_pred EEEecCCCeEEecC
Confidence 88999999999996
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-36 Score=253.32 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=237.3
Q ss_pred cCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc
Q 018293 4 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 83 (358)
Q Consensus 4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~ 83 (358)
.|.++.+++|.+.. ++.+|+... ..-.++..|+..+ +.+. ...+|.+|++|+.|.++++|.++
T Consensus 333 G~e~~~laVATNs~-----~lr~y~~~~-~~c~ii~GH~e~v----lSL~-------~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 333 GPEESHLAVATNSP-----ELRLYTLPT-SYCQIIPGHTEAV----LSLD-------VWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CCccceEEEEeCCC-----ceEEEecCC-CceEEEeCchhhe----eeee-------ecccCcEEEEecCCceEEEEEec
Confidence 58889999998886 666776554 2334555554333 2332 12567899999999999999984
Q ss_pred cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce------
Q 018293 84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC------ 157 (358)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------ 157 (358)
.... +.-+.....+|++.|.+++++..+..+|++++.|+++++|++...+.
T Consensus 396 ~~~~-----------------------~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 396 NNCS-----------------------KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred CCcc-----------------------hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccce
Confidence 3221 23334456689999999999988888999999999999999976221
Q ss_pred ---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293 158 ---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234 (358)
Q Consensus 158 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~ 234 (358)
..+...|...|++++.+|+. .++++|+.|.+.++|++........+.+|...+.++.|+|. .+.+++++.|++|+
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~-dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN-DQLLATCSGDKTVK 530 (775)
T ss_pred ehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc-cceeEeccCCceEE
Confidence 11335799999999999998 99999999999999999988877888899999999999995 56999999999999
Q ss_pred EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 314 (358)
||.+.+. .++.++.+|...|..+.|-.++ ..|++++.||.+++|++.+++ |...+..|...|++++.+
T Consensus 531 IW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 531 IWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLDAHNDRVWALSVS 598 (775)
T ss_pred EEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhhhccceeEEEeec
Confidence 9999997 8999999999999999999988 899999999999999999998 888999999999999999
Q ss_pred CCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 315 EDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
+... ++++|+.||.|.+|.=.+.+...
T Consensus 599 ~~~~-~~~tgg~Dg~i~~wkD~Te~~~~ 625 (775)
T KOG0319|consen 599 PLLD-MFVTGGGDGRIIFWKDVTEEEQN 625 (775)
T ss_pred Cccc-eeEecCCCeEEEEeecCcHHHHH
Confidence 9999 69999999999999766554433
No 30
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-35 Score=236.68 Aligned_cols=265 Identities=22% Similarity=0.361 Sum_probs=223.1
Q ss_pred eeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC
Q 018293 42 HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121 (358)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 121 (358)
....+.-+..++++| .+..++|+++..+.|+|||.......... .....+...+.+|
T Consensus 120 ~i~h~gEVnRaRymP------Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH 176 (422)
T KOG0264|consen 120 KINHDGEVNRARYMP------QNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGH 176 (422)
T ss_pred eccCCccchhhhhCC------CCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEee
Confidence 344444455666665 36678899999999999999754332210 0134556678899
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 194 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 194 (358)
++.-++++|++...-.|++++.|++|++||+.... +...+.+|...|..++|++....+|++++.|+.+.|||
T Consensus 177 ~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 177 EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred cccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 99899999999877799999999999999997442 34567899999999999998889999999999999999
Q ss_pred ccc--CCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARI--STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+|+ .+.......|.+++.|++|+|.++.+||+|+.|++|++||+|+. ..++..+.+|...|.++.|+|..
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCC
Confidence 995 44445566789999999999999999999999999999999998 47899999999999999999998
Q ss_pred CcEEEEEeCCCcEEEEecCC------------CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 273 PNLLATGSTDKMVKLWDLSN------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
...|++++.|+.+.|||+.. +.+..++...+|...|..+.|+|+..+++++.+.|+.+.||++..
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 89999999999999999864 234567888899999999999999999999999999999999863
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=245.11 Aligned_cols=281 Identities=20% Similarity=0.301 Sum_probs=229.5
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
++|+|..+.++++...+ .+.+|+..+....+-+.-.+.++ ...++ =+.-+.+++|+.|..|+||
T Consensus 19 Vd~HPtePw~la~LynG-----~V~IWnyetqtmVksfeV~~~Pv----Ra~kf-------iaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNG-----DVQIWNYETQTMVKSFEVSEVPV----RAAKF-------IARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred eecCCCCceEEEeeecC-----eeEEEecccceeeeeeeecccch----hhhee-------eeccceEEEecCCceEEEE
Confidence 57999999999999887 66666666542222222222222 12333 3567899999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL 159 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~ 159 (358)
+.++++.+. .+..|.+-|.|++.+|. ..++++++.|-+|++||.+.. .+.+
T Consensus 83 nynt~ekV~---------------------------~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 83 NYNTGEKVK---------------------------TFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred ecccceeeE---------------------------EeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeee
Confidence 998765544 56789999999999999 669999999999999999865 7889
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEc
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~ 238 (358)
++.+|...|.+++|+|.+.+.+++++-|++|++|.+....+...+.+|...|+|+.+-+-+ ..++++|++|..+++||.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 9999999999999999998999999999999999999998888888999999999998743 358999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 318 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 318 (358)
.+. .++.++.+|...|..+.|+|.- .++++|++||+++||+..+-+.. ..+.-.-+.+++++-.+.++
T Consensus 215 Qtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE--~tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 215 QTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLE--KTLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred chH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehh--hhhhcCCceEEEEeecCCCC
Confidence 997 8999999999999999999987 79999999999999999887643 33333457899999888777
Q ss_pred eEEEEEccCCeEEEEEccCCC
Q 018293 319 FVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 319 ~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.++.|..+|.|. ..+..++
T Consensus 283 -~i~vG~Deg~i~-v~lgree 301 (794)
T KOG0276|consen 283 -KIAVGFDEGSVT-VKLGREE 301 (794)
T ss_pred -eEEEeccCCcEE-EEccCCC
Confidence 477777666553 3443333
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-36 Score=249.44 Aligned_cols=243 Identities=19% Similarity=0.334 Sum_probs=218.6
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
+.|+|....++++-.+|.|.||+.++...+..+ .-..-+|.+..|-.. .+++
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksf---------------------------eV~~~PvRa~kfiaR-knWi 70 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------EVSEVPVRAAKFIAR-KNWI 70 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeee---------------------------eecccchhhheeeec-cceE
Confidence 445899999999999999999999876655543 335678899999888 7799
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccceeeecCCeeeEEEc
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWD 217 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~ 217 (358)
++|+.|..|+||+..+++.+..|..|.+.|++++.+|.. .++++++.|-+|++||.+..-. .+...+|...|.+++|+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 999999999999999999999999999999999999999 7899999999999999987754 45566899999999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC-cEEEEEeCCCcEEEEecCCCCce
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-NLLATGSTDKMVKLWDLSNNQPS 296 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 296 (358)
|.+.+.+++++-|++|++|.+... .+.+++.+|...|+|+.+-+.|. .+|++|++|.+++|||.++..
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-- 218 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-- 218 (794)
T ss_pred CCCccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--
Confidence 999999999999999999999987 88899999999999999998542 499999999999999999988
Q ss_pred eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
|+.++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-+...
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence 8999999999999999999999 79999999999999987755433
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-36 Score=255.22 Aligned_cols=267 Identities=20% Similarity=0.315 Sum_probs=203.2
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCc--------------------CceeecC-----Ccccccc--------cc
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEV--------------------QPHVILG-----GIDEEKK--------KK 104 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~--------------------~~~~~~~-----~~~~~~~--------~~ 104 (358)
++.||+||+|||+|+.||.|+||.+...+.. .+..... ......+ ..
T Consensus 272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p 351 (712)
T KOG0283|consen 272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP 351 (712)
T ss_pred EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence 4567999999999999999999998751110 0000000 0000000 00
Q ss_pred cccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEE
Q 018293 105 KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184 (358)
Q Consensus 105 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (358)
.....-..++...+.||.+.|..|+|+.+ ++|++++.|.+|++|++...+++..|. |.+.|+|++|+|-++++|++|
T Consensus 352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 352 LKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred CccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeec
Confidence 11112345677788999999999999987 489999999999999999999999998 999999999999888999999
Q ss_pred eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-----
Q 018293 185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----- 259 (358)
Q Consensus 185 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----- 259 (358)
+-||.|+||++...+... ......-|++++|.|+ ++..++|+.+|.+++|+....+. .....+..|
T Consensus 429 SLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~-------~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKL-------VSDFHIRLHNKKKK 499 (712)
T ss_pred ccccceEEeecCcCeeEe-ehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeE-------EEeeeEeeccCccc
Confidence 999999999998776554 4456688999999997 56999999999999999987633 111112212
Q ss_pred -CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 260 -DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 260 -~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
...|+++.|.|.....+++.+.|..|+|||.++..+++.+.-......-....|+.||++ ++++++|..|++|++..
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCC
Confidence 237999999997766678888999999999988875444432223344567889999997 77889999999999844
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6e-37 Score=236.89 Aligned_cols=268 Identities=21% Similarity=0.391 Sum_probs=220.6
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
++..++.|..++ .+.+|+...-.-..+...| ...++|+.+ +.+.+++|+.|.+|+|||++++
T Consensus 206 DD~kiVSGlrDn-----TikiWD~n~~~c~~~L~GH----tGSVLCLqy---------d~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDN-----TIKIWDKNSLECLKILTGH----TGSVLCLQY---------DERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cchhhhcccccC-----ceEEeccccHHHHHhhhcC----CCcEEeeec---------cceEEEecCCCceEEEEeccCC
Confidence 455566666665 6667776543222222233 334458766 6779999999999999999987
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc---eeeeec
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTLE 162 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~ 162 (358)
+++. .+.+|...|..+.|+.. ++++++.|.++.+||+.... +.+.+.
T Consensus 268 e~l~---------------------------tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLv 317 (499)
T KOG0281|consen 268 EPLN---------------------------TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLV 317 (499)
T ss_pred chhh---------------------------HHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHh
Confidence 7655 55689999999999954 89999999999999997653 455678
Q ss_pred ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293 163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
+|...|+.+.|+. +++++++.|.+|++|++.+.+.+....+|...|-|+.+. +.++++|+.|.+|++||+..+
T Consensus 318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G- 390 (499)
T KOG0281|consen 318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG- 390 (499)
T ss_pred hhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEecccc-
Confidence 9999999999975 689999999999999999999999899999999998874 569999999999999999998
Q ss_pred CCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-------eeeEecCCCCceeEEEEEcC
Q 018293 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNPKAGAVFSVAFSE 315 (358)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~~~~ 315 (358)
.++..+.+|..-|.++.|.. ..+++|+.||+|++||+..+.. .++.....|.+.|..+.|..
T Consensus 391 --------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 391 --------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred --------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 88999999999999999985 7899999999999999987643 26667778999999999965
Q ss_pred CCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 316 DSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
- .+++++.|.+|.|||+.++..-.
T Consensus 460 f---qIvsssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 460 F---QIISSSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred e---EEEeccCCCeEEEEEcCCCCccc
Confidence 3 47788999999999998876553
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-36 Score=222.17 Aligned_cols=219 Identities=23% Similarity=0.392 Sum_probs=196.5
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
-++.+..++|++...+.+++++.||++++||+.. ..+++.++.|..+|.++.|++.....+++++.|++|++|+...+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999999888999999999999999643 367899999999999999999887889999999999999999999
Q ss_pred CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
.+....+|...|....|+|..++++++++.|+.+++||++.. .....+..|...|.++.|+.-.+++|+||
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~---------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP---------GKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC---------CceeEEEeccceeEeecccccCCcEEEec
Confidence 888888999999999999999999999999999999999987 33445899999999999999888999999
Q ss_pred eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293 280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 349 (358)
+.|+.|++||+++.+. ++.++.+|.-.|..++|||....+|++++.|-+++|||...+....+...++.
T Consensus 210 ~vd~~vr~wDir~~r~-pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRT-PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred CCCceEEEEehhhccc-cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 9999999999998773 67888999999999999998877999999999999999997776655555443
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=253.88 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=228.8
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|+|+|..++++++..++ .+.+||...+....-+..|+.++. .+.|+|++.++++|+.|-.|+||
T Consensus 15 lsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rFdeHdGpVR-----------gv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRFDEHDGPVR-----------GVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred eecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhhhccCCccc-----------eeeecCCCCeEEecCCccEEEEE
Confidence 68999999999998875 445555444333344455554443 34569999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
+..+ .+....+.||-+.|..+.|++. -.+++++|.|-+|+||+..+++++..
T Consensus 79 nYk~---------------------------rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iav 130 (1202)
T KOG0292|consen 79 NYKT---------------------------RRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAV 130 (1202)
T ss_pred eccc---------------------------ceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEE
Confidence 9964 5555678899999999999999 56999999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-----------------------------cceeeecCCe
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-----------------------------GFKWAVAADV 211 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------~~~~~~~~~i 211 (358)
+.+|...|.|..|+|.. .++++++-|-+|++||+..-+.. ....+|...|
T Consensus 131 ltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred EecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence 99999999999999988 79999999999999998632110 1123567789
Q ss_pred eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293 212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
+-++|+|.-+ ++++|++|..|++|.+...+. -.+....+|...|.++-|+|.. +++++.++|++|+|||+.
T Consensus 210 NwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 210 NWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecc
Confidence 9999999654 999999999999999987532 3455678999999999999987 899999999999999999
Q ss_pred CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 292 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
... .+..+......-+.++-+|..+ +++ ++.|+.+.||.++...
T Consensus 281 kRt--~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 281 KRT--SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLERER 324 (1202)
T ss_pred ccc--ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEcccC
Confidence 887 5666655567889999999998 566 5567777788776443
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=254.84 Aligned_cols=250 Identities=26% Similarity=0.424 Sum_probs=212.9
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
+.|+++|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+ +.++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d-~~~l 218 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPD-GSYL 218 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCC-CcEE
Confidence 46799999999999999999999954331 122344689999999999999 6699
Q ss_pred EEEEcCCeEEEEEC-CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 139 ASASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 139 ~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
++++.|+++++||+ ..+..++++.+|...|++++|+|++ +++++|+.|++|++||+++++.......|...|++++|+
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 99999999999999 5558899999999999999999999 999999999999999999999988888999999999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
++ ++++++++.|+.|++||+.++.. .+...+..+.. +++++.|+|++ .++++++.|+.+++||++...
T Consensus 298 ~d-~~~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~- 367 (456)
T KOG0266|consen 298 PD-GNLLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK- 367 (456)
T ss_pred CC-CCEEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc-
Confidence 95 55888999999999999998831 03445555544 49999999998 899999999999999999887
Q ss_pred eeeEecCCCCc---eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 296 SCIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 296 ~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
......+|.. .+.+...++.+.+ +++|+.|+.|++||+.++..+.+.-.+
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 368 -SVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred -ceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCC
Confidence 4556666655 3445566788884 889999999999999998877776666
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-36 Score=218.25 Aligned_cols=240 Identities=23% Similarity=0.378 Sum_probs=202.9
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
+++|+-||+|.++++.|.+|++|+... ..+.+.+.+|..+|..++.+.+ ...
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~r---------------------------g~liktYsghG~EVlD~~~s~D-nsk 73 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLR---------------------------GALIKTYSGHGHEVLDAALSSD-NSK 73 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccc---------------------------cceeeeecCCCceeeecccccc-ccc
Confidence 345689999999999999999999854 4455577799999999999999 668
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC--CccceeeecCCeeeEE
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLA 215 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~ 215 (358)
+++|+.|..+.+||+++|+..+.+.+|...|+.++|+.+. ..+++|+.|.++++||.+... +++........|.++.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred cccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 9999999999999999999999999999999999999988 899999999999999998764 4454556677899998
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
... ..+++|+.||+++.||++.+ ..... -...+|+++.|++++ +..++++.|+++++.|-.+++
T Consensus 153 v~~---heIvaGS~DGtvRtydiR~G---------~l~sD--y~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk- 216 (307)
T KOG0316|consen 153 VAE---HEIVAGSVDGTVRTYDIRKG---------TLSSD--YFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK- 216 (307)
T ss_pred ecc---cEEEeeccCCcEEEEEeecc---------eeehh--hcCCcceeEEecCCC-CEEEEeeccceeeecccchhH-
Confidence 864 47999999999999999987 32222 234689999999999 899999999999999999998
Q ss_pred eeeEecCCCCce--eEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 296 SCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 296 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
.+....+|... =...+++.... .+++|++||.+++||+.++..+..+
T Consensus 217 -lL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 217 -LLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred -HHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeeee
Confidence 45566777554 33456666666 5899999999999999988776543
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=217.25 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=197.5
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
+.-+|++++.|-+||+|...++.+.+.+ +.....|+.+...|+ +..||+++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTi---------------------------qh~dsqVNrLeiTpd-k~~LAaa~~ 60 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTI---------------------------QHPDSQVNRLEITPD-KKDLAAAGN 60 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEE---------------------------ecCccceeeEEEcCC-cchhhhccC
Confidence 3458999999999999999987776543 234578999999999 668887776
Q ss_pred CCeEEEEECCCCc--eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293 144 DKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 221 (358)
Q Consensus 144 dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (358)
-.|++||+++++ ++.++.+|...|+++.|..+| +.+++|++||+++|||++.....+ ...+.++|+++..+|+ .
T Consensus 61 -qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR-~~~~~spVn~vvlhpn-Q 136 (311)
T KOG0315|consen 61 -QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQR-NYQHNSPVNTVVLHPN-Q 136 (311)
T ss_pred -CeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccch-hccCCCCcceEEecCC-c
Confidence 579999999875 588999999999999999999 999999999999999999966555 6677899999999995 5
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC----ce
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----PS 296 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~ 296 (358)
..|++|..+|.|++||+... .....+ .....+|.++...|+| .+|+++...|..++|++-... ..
T Consensus 137 teLis~dqsg~irvWDl~~~---------~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGEN---------SCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred ceEEeecCCCcEEEEEccCC---------ccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccce
Confidence 58999999999999999987 222222 3345789999999999 899999999999999987643 34
Q ss_pred eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
++..++.|.+.+..+.+||+++| ||+++.|.+++||+..+.
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCc
Confidence 56678889999999999999996 999999999999999876
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-35 Score=245.99 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=225.8
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
.++-.|..|+.|+..- +.+-||-|..+. .......|.. -..|+++ ||||+++|||+.||.|+|||
T Consensus 314 ~~N~tGDWiA~g~~kl--gQLlVweWqsEs-YVlKQQgH~~-----~i~~l~Y-------SpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKL--GQLLVWEWQSES-YVLKQQGHSD-----RITSLAY-------SPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EecccCCEEEEcCCcc--ceEEEEEeeccc-eeeecccccc-----ceeeEEE-------CCCCcEEEeccCCCcEEEEe
Confidence 5677899999997753 566666666543 2222222222 2235554 99999999999999999999
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 161 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 161 (358)
..++-+ ...+..|+..|+.+.|+.. ++.+++.+.||+|+.||+...+..+++
T Consensus 379 ~~SgfC---------------------------~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 379 TQSGFC---------------------------FVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred ccCceE---------------------------EEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceeeee
Confidence 975433 3356679999999999999 779999999999999999999988888
Q ss_pred ccc-ccceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293 162 EHH-TDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239 (358)
Q Consensus 162 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 239 (358)
... .-...|++..|.| .++++|+.|. .|.+|++++++.+..+.+|+++|.+++|+|.+ ..+++++.|.+|++||+-
T Consensus 431 t~P~p~QfscvavD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIF 508 (893)
T ss_pred cCCCceeeeEEEEcCCC-CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEee
Confidence 642 2345788888988 7777887776 59999999999999999999999999999965 599999999999999998
Q ss_pred cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce------------------eeEec
Q 018293 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS------------------CIASR 301 (358)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------~~~~~ 301 (358)
.. ......-.+...+..++|.|+| ..|++++.||.|.+||....... .....
T Consensus 509 ~s---------~~~vEtl~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 509 SS---------SGTVETLEIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred cc---------CceeeeEeeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 75 2233334467789999999999 89999999999999998764321 00111
Q ss_pred CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 346 (358)
.......+.+++++||.+ +++||..+.|++|++.++-.++++--
T Consensus 579 sa~~K~Ftti~ySaDG~~-IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKC-ILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred cccCCceEEEEEcCCCCE-EEecCCcccEEEEECchhheeeeEEe
Confidence 122357899999999996 66788999999999999887765443
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.1e-35 Score=227.26 Aligned_cols=276 Identities=15% Similarity=0.259 Sum_probs=220.6
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
++++|+.+++++|+.++ .-++|+...+..+.....|+..+ .|+.| |.+|.+||||+.+|.|+||
T Consensus 70 vsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV----t~~~F-------shdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV----TCCSF-------SHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred EEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce----EEEEE-------ccCceEEEecCCCccEEEE
Confidence 36789999999998877 89999998875444444443222 35544 8999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
+..++....+ +...-..|.-+.|+|. ...|++|+.||.+.+|.+.++...+.
T Consensus 134 ~~stg~~~~~---------------------------~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 134 KVSTGGEQWK---------------------------LDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred EcccCceEEE---------------------------eecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeE
Confidence 9986544332 1124466888899998 77999999999999999999888899
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----------------------------------
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------------------------------- 206 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------------- 206 (358)
+.+|..++++=.|.|+| +.++++..||+|++||+.++.+......
T Consensus 186 ~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 186 MSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred ecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 99999999999999999 8899999999999999987754332110
Q ss_pred -----------------ecCCeeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293 207 -----------------VAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 267 (358)
Q Consensus 207 -----------------~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 267 (358)
+...+.++.+.|. .-.++++|+-||+|.+||+... .++..-.|..+|..+.
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------~~R~~c~he~~V~~l~ 334 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------TLRHICEHEDGVTKLK 334 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------hhheeccCCCceEEEE
Confidence 0011122222221 1236888999999999999875 3344456888899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
|-+ . .+|++++.+|.|+.||.++++ ++..+.+|...|.+++++|+++ ++++++.|++.+||+..
T Consensus 335 w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 998 4 799999999999999999999 7888999999999999999999 69999999999999864
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.9e-37 Score=236.96 Aligned_cols=225 Identities=26% Similarity=0.447 Sum_probs=200.1
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
|...+++|..|++|+|||.++.. ....+.||++.|.|+.|.. ..+++|+.
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHtGSVLCLqyd~---rviisGSS 255 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHTGSVLCLQYDE---RVIVSGSS 255 (499)
T ss_pred cchhhhcccccCceEEeccccHH---------------------------HHHhhhcCCCcEEeeeccc---eEEEecCC
Confidence 77789999999999999997543 3446779999999999974 49999999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---cceeeecCCeeeEEEcCCC
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPHA 220 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~ 220 (358)
|.+|++||+++++++.++-+|...|..+.|+. .++++++.|.++.+||+.....+ ..+.+|...|+.+.|+.
T Consensus 256 DsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred CceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence 99999999999999999999999999999985 58999999999999999877543 34567899999999964
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 300 (358)
.++++++.|.+|++|++.+. ..+..+.+|...|.|+.+. + +++++|+.|.+|++||+..+. ++..
T Consensus 331 -kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~--cLRv 395 (499)
T KOG0281|consen 331 -KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA--CLRV 395 (499)
T ss_pred -ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH--HHHH
Confidence 49999999999999999998 8899999999999999887 3 899999999999999999998 7778
Q ss_pred cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
+++|..-|.++.|... .+++|+.||+|++||+..+...
T Consensus 396 LeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred HhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence 8999999999999654 4889999999999999887654
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=247.74 Aligned_cols=285 Identities=22% Similarity=0.315 Sum_probs=232.9
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCCCC-ceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV 84 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~ 84 (358)
..+.+++...+. ++.+|+..+.... .+...+ ..+..+.++ .|+.++||+++..+.+++|++.+
T Consensus 292 ~~~~~l~vtaeQ-----nl~l~d~~~l~i~k~ivG~n-----dEI~Dm~~l------G~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 292 SMSQLLLVTAEQ-----NLFLYDEDELTIVKQIVGYN-----DEILDMKFL------GPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred ccCceEEEEccc-----eEEEEEccccEEehhhcCCc-----hhheeeeec------CCccceEEEEeCCCceEEEecCC
Confidence 344455555665 6777766553221 222222 233355554 68899999999999999998875
Q ss_pred ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----ceeee
Q 018293 85 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLT 160 (358)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~ 160 (358)
..+. .+.||+..|.+++...+ +.+|++|+.|.++++|.++.+ .++..
T Consensus 356 ~~c~----------------------------ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 356 SYCQ----------------------------IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred CceE----------------------------EEeCchhheeeeeeccc-CcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence 4332 45589999999995555 469999999999999988543 34566
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---------cceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---------GFKWAVAADVESLAWDPHAEHSFVVSLEDG 231 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 231 (358)
..+|...|.+++++..+..+|++++.|+++++|++...+.. .....|...|++++.+|+ ..++++|+.|.
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-dkLiAT~SqDk 485 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-DKLIATGSQDK 485 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-CceEEeccccc
Confidence 78999999999999988899999999999999999873221 122357889999999995 56999999999
Q ss_pred eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293 232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 311 (358)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 311 (358)
+.++|++... .....+.+|...+.++.|+|.. +.++|+|.|++|+||.+.+.. ++.++.+|...|..+
T Consensus 486 taKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 486 TAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKTFEGHTSAVLRA 553 (775)
T ss_pred ceeeecccCc---------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeeeecCccceeEee
Confidence 9999999965 8889999999999999999987 899999999999999999988 899999999999999
Q ss_pred EEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293 312 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349 (358)
Q Consensus 312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 349 (358)
.|-.+|.+ |++++.||.|++|++++++++..+-.|..
T Consensus 554 ~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 554 SFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred eeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 99999995 88999999999999999999987776654
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=232.35 Aligned_cols=281 Identities=16% Similarity=0.261 Sum_probs=220.9
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee-ecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
++||++|..||+|..+. ..-+|....+....+ .++. .....+.-+.| |||.++|++|+.|..+.+
T Consensus 230 l~FS~nGkyLAsaSkD~-----Taiiw~v~~d~~~kl--~~tlvgh~~~V~yi~w-------SPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDS-----TAIIWIVVYDVHFKL--KKTLVGHSQPVSYIMW-------SPDDRYLLACGFDEVLSL 295 (519)
T ss_pred EEEcCCCeeEeeccCCc-----eEEEEEEecCcceee--eeeeecccCceEEEEE-------CCCCCeEEecCchHheee
Confidence 57999999999998776 444555544322122 2221 12223335555 999999999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
||+++++....+. .+|...+.+++|.|| +..+++|+.|+++..||+.. ....
T Consensus 296 wDv~tgd~~~~y~--------------------------~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDg-n~~~ 347 (519)
T KOG0293|consen 296 WDVDTGDLRHLYP--------------------------SGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDG-NILG 347 (519)
T ss_pred ccCCcchhhhhcc--------------------------cCcCCCcceeEEccC-CceeEecCCCCcEEEecCCc-chhh
Confidence 9999887654321 235688999999999 67899999999999999764 4444
Q ss_pred eeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 160 TLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 160 ~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
..++- ...|.+++..+|| ..+++.+.|..|++++.++..... ......+|++++.+.+ +.++++.-.+..+++||+
T Consensus 348 ~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d-~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKD-GKLALVNLQDQEIHLWDL 424 (519)
T ss_pred cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCC-CcEEEEEcccCeeEEeec
Confidence 44432 2568999999999 888888899999999998766554 4456789999999995 558888889999999999
Q ss_pred ccCCCCCCCCCCCccEEEeecCCc--eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 239 RTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
... ..+..+.+|... +-.-+|.-....++++|++|+.|+||+..+++ .+..+.+|...|++++|+|.
T Consensus 425 ~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 425 EEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred chh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcceeeEEecCCC
Confidence 965 677777787643 44445655444799999999999999999999 57788999999999999999
Q ss_pred CCeEEEEEccCCeEEEEEccC
Q 018293 317 SPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 317 ~~~~l~~~~~dg~i~vw~~~~ 337 (358)
..+++|+++.||+|+||....
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 999999999999999998764
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.1e-34 Score=224.93 Aligned_cols=280 Identities=22% Similarity=0.342 Sum_probs=228.9
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
....|++|+.++ .+.+|+... +....+..|...+ ..+.|+.. ++....|++++.|.++++|.++.+
T Consensus 114 ~~~~IltgsYDg-----~~riWd~~G-k~~~~~~Ght~~i----k~v~~v~~----n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 114 ASKWILTGSYDG-----TSRIWDLKG-KSIKTIVGHTGPI----KSVAWVIK----NSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cCceEEEeecCC-----eeEEEecCC-ceEEEEecCCcce----eeeEEEec----CCccceEEEecCCceEEEEEecCc
Confidence 368899999998 778888776 3444455554333 36777653 444558999999999999999865
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC------------
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA------------ 153 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~------------ 153 (358)
+... .....-.||++.|-+++..++ +..+++|+.|.++.+|+.+
T Consensus 180 ~~~~-----------------------~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 180 ENKV-----------------------KALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred hhhh-----------------------hHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccch
Confidence 4332 122233389999999999999 6799999999999999932
Q ss_pred -------------CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293 154 -------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 220 (358)
Q Consensus 154 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (358)
++.++..+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.... .......+.++..+| .
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~~~ksl~~i~~~~-~ 311 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLTTNKSLNCISYSP-L 311 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eeecCcceeEeeccc-c
Confidence 12355677899999999999984 589999999999999999988776 445667899999999 5
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 300 (358)
..++++|+.|..+++||.|++.. ....+.+.+|...|.++.|+|.....|++|+.|+++++||+|+.+. +++.
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plyd 384 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYD 384 (423)
T ss_pred cceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-ccee
Confidence 67999999999999999998843 3566788999999999999999888999999999999999998763 5778
Q ss_pred cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
+.+|...|.++.|...+ .+++||.|.+|+++.-.
T Consensus 385 I~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred eccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 88999999999998765 58999999999998753
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-35 Score=227.04 Aligned_cols=278 Identities=17% Similarity=0.291 Sum_probs=228.5
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+++-|.+..+++|..++ .+.+||...+........|...+. .+++|+--.||.+++.|+.|+.|
T Consensus 157 vavdP~n~wf~tgs~Dr-----tikIwDlatg~LkltltGhi~~vr-----------~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADR-----TIKIWDLATGQLKLTLTGHIETVR-----------GVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred EeeCCCceeEEecCCCc-----eeEEEEcccCeEEEeecchhheee-----------eeeecccCceEEEecCCCeeEEE
Confidence 46889999999998886 677777777522222222221111 33458888999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|+... +.++.+.||-..|.|++..|. -..|++|+.|.++++||+++...+..
T Consensus 221 DLe~n---------------------------kvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 221 DLEYN---------------------------KVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred echhh---------------------------hhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEE
Confidence 99753 444567799999999999999 67999999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+.+|..+|..+.+.|.+ ..+++|+.|++|++||++.++.......|...+.+++.+| ..+.|++++.| .++-|++..
T Consensus 273 l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~ 349 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPE 349 (460)
T ss_pred ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCc
Confidence 99999999999999988 6799999999999999999999888889999999999999 56677777766 589999998
Q ss_pred CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE-ec--CC---CCceeEEEEEc
Q 018293 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SR--NP---KAGAVFSVAFS 314 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~--~~---~~~~v~~~~~~ 314 (358)
+ ..+..+.+|..-|++++.+.|+ ++++|++.|.+.+||.+++...... .. .+ ....|.+.+|.
T Consensus 350 g---------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 350 G---------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred c---------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 7 6677799999999999999876 8999999999999999987521111 01 11 24568999999
Q ss_pred CCCCeEEEEEccCCeEEEEEccC
Q 018293 315 EDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
..|. .|++|..|.+|++|.-..
T Consensus 419 ktg~-rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 419 KTGS-RLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccCc-eEEeccCCcceEEEeccc
Confidence 9998 599999999999997543
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=238.30 Aligned_cols=278 Identities=17% Similarity=0.283 Sum_probs=229.9
Q ss_pred cccC-CCcEEEEEEecCCCceEEEEEEeccC-CCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 2 TINP-NDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 2 ~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
.+.| .+-+|+.+..+. .+++|+.-. ..-...|.+|...+. +++|+++|..+++++.|+.|++
T Consensus 221 ~~fp~~~hLlLS~gmD~-----~vklW~vy~~~~~lrtf~gH~k~Vr-----------d~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDG-----LVKLWNVYDDRRCLRTFKGHRKPVR-----------DASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hhccceeeEEEecCCCc-----eEEEEEEecCcceehhhhcchhhhh-----------hhhccccCCeeeeeecceeeee
Confidence 4667 788888887776 888887655 344556667755553 4456999999999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
||++++++...+. -...++|+.|.|++.+.+++|+.|+.|+.||+++++.++
T Consensus 285 wDtETG~~~~~f~----------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 285 WDTETGQVLSRFH----------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred eccccceEEEEEe----------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 9999988765432 335689999999977899999999999999999999999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
++..|-+.|..+.|-+++ ..+++++.|+++++|+.+.+-.+.... .......++..+|+ +..+++=+.|+.|.+|.+
T Consensus 337 eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFST 414 (503)
T ss_pred HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC-CCeehhhccCceEEEEec
Confidence 999999999999999999 889999999999999999876655333 33456788999995 458999999999999997
Q ss_pred ccCCCCCCCCCCCccEEEeecC--CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 239 RTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
..... ......+.+|. +.-..+.|+||| .+|++|..||.+.+||.++.+ .+..+..|.+++..+.|+|.
T Consensus 415 ~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 415 VPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred ccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCcceEEEEecCC
Confidence 65422 13334556663 556789999999 899999999999999999988 56678889999999999998
Q ss_pred CCeEEEEEccCCeEEEEE
Q 018293 317 SPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 317 ~~~~l~~~~~dg~i~vw~ 334 (358)
....+|+++.||.|++|+
T Consensus 486 e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceeEecccCceeEecC
Confidence 877899999999999996
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=237.97 Aligned_cols=273 Identities=23% Similarity=0.403 Sum_probs=226.4
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
..+++++|... .+|+|+...+....+...+ ...+.++.| +++|++||+|..+|.|.|||..+.
T Consensus 187 s~n~laValg~------~vylW~~~s~~v~~l~~~~----~~~vtSv~w-------s~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 187 SANVLAVALGQ------SVYLWSASSGSVTELCSFG----EELVTSVKW-------SPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred cCCeEEEEecc------eEEEEecCCCceEEeEecC----CCceEEEEE-------CCCCCEEEEeecCCeEEEEehhhc
Confidence 56788888554 8999999887433332222 444556666 899999999999999999999754
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCC-CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee-ecc
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH 163 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~ 163 (358)
.... .+.+ |...|.+++|+. ..+.+|+.|+.|..+|++..+.... +.+
T Consensus 250 k~~~---------------------------~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 250 KKTR---------------------------TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred cccc---------------------------cccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 4333 3334 999999999994 4899999999999999998866555 889
Q ss_pred cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE--ecCCeEEEEEcccC
Q 018293 164 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS--LEDGTIKGFDIRTA 241 (358)
Q Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~dg~i~i~d~~~~ 241 (358)
|...|..++|++++ .++++|+.|+.+.|||............|.+.|.+++|+|....+||+| +.|+.|++||..++
T Consensus 300 H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999999999 9999999999999999988888888899999999999999999999996 57999999999987
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE-EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (358)
..+..+. ....|.++.|++....++.+ |..++.|.||+..+.+ .+..+.+|...|..++++|||.+
T Consensus 379 ---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la~SPdg~~- 445 (484)
T KOG0305|consen 379 ---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLALSPDGET- 445 (484)
T ss_pred ---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEEECCCCCE-
Confidence 4444443 35789999999987445554 3447789999999876 67788999999999999999995
Q ss_pred EEEEccCCeEEEEEccCCC
Q 018293 321 LAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 321 l~~~~~dg~i~vw~~~~~~ 339 (358)
+++|+.|.++++|++-+..
T Consensus 446 i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDER 464 (484)
T ss_pred EEEecccCcEEeccccCCC
Confidence 8899999999999998753
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=213.00 Aligned_cols=237 Identities=26% Similarity=0.426 Sum_probs=199.2
Q ss_pred ccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 59 LKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 59 ~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++|+|- |..||+|+.|+.|++|+...++......++ -.+|+..|..++|+|. +++
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-----------------------d~~hkrsVRsvAwsp~-g~~ 75 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-----------------------DDGHKRSVRSVAWSPH-GRY 75 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-----------------------cccchheeeeeeecCC-CcE
Confidence 344777 889999999999999999754333322222 1379999999999999 669
Q ss_pred EEEEEcCCeEEEEECCCC--ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC---CccceeeecCCee
Q 018293 138 LASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVE 212 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~ 212 (358)
|++|+.|.++.||.-..+ +++..+.+|...|.+++|+++| ++|++++.|..|-+|.+.... ....+..|...|.
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 999999999999986644 7899999999999999999999 999999999999999998543 3455678899999
Q ss_pred eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
.+.|+|. ..+|++++.|++|++|+-.... ...+...+.+|...|.+++|+|.| ..|++++.|++++||-..+
T Consensus 155 ~V~WHPt-~dlL~S~SYDnTIk~~~~~~dd------dW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 155 HVIWHPT-EDLLFSCSYDNTIKVYRDEDDD------DWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred EEEEcCC-cceeEEeccCCeEEEEeecCCC------CeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeecc
Confidence 9999994 5599999999999999987421 147889999999999999999998 8999999999999999764
Q ss_pred CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 293 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.- ...|...+..+.|. ++ ++++++.|+.|++|.-..
T Consensus 227 ~~------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 227 DL------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD 262 (312)
T ss_pred Cc------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence 32 12466789999999 55 699999999999998764
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-35 Score=251.54 Aligned_cols=255 Identities=20% Similarity=0.348 Sum_probs=223.9
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
.++|+|....++++-..|.|++||..-+ .+...+..|.++|..++|+|+ ..+
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~---------------------------tli~rFdeHdGpVRgv~FH~~-qpl 65 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMG---------------------------TLIDRFDEHDGPVRGVDFHPT-QPL 65 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhh---------------------------hHHhhhhccCCccceeeecCC-CCe
Confidence 3467999999999999999999999643 344467789999999999999 679
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
+++|+.|-.|++|+.++.+++.++.+|-+.|+.+.|++.- ..+++++.|-+|++|+..+.+++....+|...|.|..|+
T Consensus 66 FVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred EEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 9999999999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCC--------------------CCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDST--------------------SQQSSFTLHAHDKAVCTISYNPLVPNLLA 277 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 277 (358)
|. +.++++++-|.+|++||+...+.....+ .....+.+.+|+..|+-++|+|.- .+++
T Consensus 145 pt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliV 222 (1202)
T KOG0292|consen 145 PT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIV 222 (1202)
T ss_pred Cc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEE
Confidence 94 5599999999999999997654322111 112235578999999999999987 7999
Q ss_pred EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
+|++|..|++|.+...+...+-+..+|.+.|.++-|+|... ++++.|.|++|+|||+...+.+..+
T Consensus 223 SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence 99999999999999887666777889999999999999877 6889999999999999988777654
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-34 Score=231.44 Aligned_cols=281 Identities=22% Similarity=0.302 Sum_probs=223.8
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|.|+|..+.=++..+.- .+.+|+.......+.+..-+... +++.|-.||++||+|...|.|+||
T Consensus 32 l~fsp~~P~d~aVt~S~-----rvqly~~~~~~~~k~~srFk~~v-----------~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 32 LCFSPKHPYDFAVTSSV-----RVQLYSSVTRSVRKTFSRFKDVV-----------YSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred EecCCCCCCceEEeccc-----EEEEEecchhhhhhhHHhhccce-----------eEEEeecCCeEEEccCCcCcEEEe
Confidence 46788766544443333 77777776532222222111111 245567899999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|..+ ......+.+|+.+|..+.|+|.++.++++|+.|+.+++||+.+......
T Consensus 96 D~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 96 DMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred cccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence 9643 4445577789999999999999999999999999999999999987778
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+.+|++.|.|.+|+|..+.++++|+.||.|++||++..........|..+|..+.+-|.+ .++++++ .+.+++||+-+
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTT 226 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecC
Confidence 999999999999999887899999999999999999987666678899999999999954 4666654 56899999997
Q ss_pred CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (358)
+ .+.+..+..|...|+|+++..++ ..|++|+-|+.+++||+.+.+. +..+ ...++|.+++.+|+++.
T Consensus 227 G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv--v~s~-~~~~pvLsiavs~dd~t- 293 (487)
T KOG0310|consen 227 G--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV--VHSW-KYPGPVLSIAVSPDDQT- 293 (487)
T ss_pred C--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE--EEee-ecccceeeEEecCCCce-
Confidence 7 36666666799999999999988 8999999999999999877763 3333 24588999999999995
Q ss_pred EEEEccCCeEEEEEccCCC
Q 018293 321 LAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 321 l~~~~~dg~i~vw~~~~~~ 339 (358)
++.|-.||.+.+-+...++
T Consensus 294 ~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 294 VVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEEecccceeeeehhhccc
Confidence 8889999988777554433
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.4e-33 Score=260.54 Aligned_cols=250 Identities=21% Similarity=0.313 Sum_probs=202.0
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
+++|+|+|++||+|+.|+.|+||++........ ........+ .+...|.+++|++..+.+
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeEEeccCCCCE
Confidence 345599999999999999999999853210000 000011112 234679999999865779
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
|++++.||+|++||+.+++.+..+.+|...|++++|+|.++.+|++++.||.|++||++++...... .....+.++.|+
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~ 626 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFP 626 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEe
Confidence 9999999999999999999999999999999999999854489999999999999999887665433 344678999997
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC---
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--- 294 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--- 294 (358)
+.++..+++|+.||.|++||+++.. .....+.+|...|.++.|. ++ .+|++++.|+.|++||++...
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc
Confidence 7677899999999999999998752 3566778899999999997 44 789999999999999997531
Q ss_pred -ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 295 -PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 295 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
...+..+.+|...+..++|+|++. +|++|+.||.|++|+.....
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCC
Confidence 124667888999999999999999 59999999999999987654
No 53
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=7.5e-33 Score=239.00 Aligned_cols=255 Identities=18% Similarity=0.201 Sum_probs=192.6
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
++++..+++++.+.....|+...+..+.+... .++.......+.+|.+.|++++|+|.++++|++|
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~--------------~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTD--------------YGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccc--------------cccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 56767778888788888887654322111100 0111111234678999999999999436799999
Q ss_pred EcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 142 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 142 ~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
+.|++|++||+.++ +++..+.+|...|.+++|+|++.++|++++.|+.|++||+++++.......|...|.++
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999999999765 34677889999999999999876799999999999999999887766566688899999
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc-eeEEEecCCCCcEEEEEe----CCCcEEEEe
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD 289 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~l~~~~----~dg~i~i~d 289 (358)
+|+|+ +.++++++.|+.|++||++++ ..+..+..|.+. ...+.|.+++ ..+++++ .|+.|++||
T Consensus 175 a~spd-G~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 175 EWNLD-GSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred EEECC-CCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence 99995 568999999999999999987 667778888764 4567889887 5555543 478999999
Q ss_pred cCCCCceeeEecC-CCCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccCCCcccc
Q 018293 290 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~ 343 (358)
+++... ...... .+...+....|++++.. |++++ .|+.|++||+.+++.+..
T Consensus 244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence 987653 222222 23345666789999995 55555 699999999998876543
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.5e-33 Score=224.58 Aligned_cols=284 Identities=19% Similarity=0.319 Sum_probs=223.5
Q ss_pred cCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc
Q 018293 4 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 83 (358)
Q Consensus 4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~ 83 (358)
.|.++.++..... .+.+-+........+|..|..... - .+|||.|.|+|+|...|.|||||..
T Consensus 27 dpkgd~ilY~nGk------sv~ir~i~~~~~~~iYtEH~~~vt----V-------AkySPsG~yiASGD~sG~vRIWdtt 89 (603)
T KOG0318|consen 27 DPKGDNILYTNGK------SVIIRNIDNPASVDIYTEHAHQVT----V-------AKYSPSGFYIASGDVSGKVRIWDTT 89 (603)
T ss_pred CCCCCeEEEeCCC------EEEEEECCCccceeeeccccceeE----E-------EEeCCCceEEeecCCcCcEEEEecc
Confidence 4666666666332 566666666655677777743331 1 2459999999999999999999985
Q ss_pred cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE-EcCCeEEEEECCCCceeeeec
Q 018293 84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAAGKCNLTLE 162 (358)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~ 162 (358)
.. ..-++..++.-.++|..|+|++++.++.|+| +.+...+++-.++|..+..+.
T Consensus 90 ~~-------------------------~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 90 QK-------------------------EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT 144 (603)
T ss_pred Cc-------------------------ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence 31 2223334555678999999999955444444 223334444445788899999
Q ss_pred ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293 163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
+|...|.++.|-|..+..+++++.|+++.+|+---.+.......|...|.++.|+|+ +.+|++.+.||.+.+||=.++
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktg- 222 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTG- 222 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCc-
Confidence 999999999999999999999999999999987665655656678889999999997 559999999999999999998
Q ss_pred CCCCCCCCCccEEEe---ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce-----------------------
Q 018293 243 SDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----------------------- 296 (358)
Q Consensus 243 ~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------- 296 (358)
..+..+. +|.+.|.++.|+||+ ..+++++.|.+++|||+.+.+..
T Consensus 223 --------e~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 223 --------EKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred --------cEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 6666776 899999999999998 89999999999999999775321
Q ss_pred ------------------eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 297 ------------------CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 297 ------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
....+.+|...|+++..+|++.+ |.+|+.||.|.-|+..++..-
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEEEEecCCcccc
Confidence 23345678889999999999996 889999999999999887754
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=221.33 Aligned_cols=281 Identities=16% Similarity=0.284 Sum_probs=229.4
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeec-eeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHH-HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
.|+|+|+.|++|+.+ +.+++|.|-.+.- +........ -..+....+|+.+ |.|...||+|+.||.|+|
T Consensus 220 ~FSPDgqyLvsgSvD---GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVD---GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLASGSQDGKIKV 289 (508)
T ss_pred eeCCCCceEeecccc---ceeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhccCcCCcEEE
Confidence 489999999999777 5666665554331 111111111 1334455556654 899999999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
|.+.++++++.+ -..|+..|+|+.|+.+ +..+++++.|.++++.-+++|+++.
T Consensus 290 Wri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 290 WRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLK 342 (508)
T ss_pred EEEecchHHHHh--------------------------hhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHH
Confidence 999998887642 2269999999999999 5688899999999999999999999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 237 (358)
.+++|.+.|+...|.++| ..+++++.||+|++|+..+.++..... +...+|..+..-|.++..++++...+++++.+
T Consensus 343 EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 343 EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 999999999999999999 899999999999999999988876443 34567899999998888999999999999999
Q ss_pred cccCCCCCCCCCCCccEEEee---cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293 238 IRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 314 (358)
+.. +.+..+.. ..+...+.+.+|.| .++++.++|+.++.|...+++ ....+..|...+..++-+
T Consensus 422 ~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhEkdvIGl~HH 488 (508)
T KOG0275|consen 422 MQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHEKDVIGLTHH 488 (508)
T ss_pred ccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeecccccccccccC
Confidence 874 44555433 23556777899998 899999999999999999998 455667788889999999
Q ss_pred CCCCeEEEEEccCCeEEEEE
Q 018293 315 EDSPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~ 334 (358)
|..+ ++|+-+.||.+++|.
T Consensus 489 PHqN-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQN-LLASYSEDGLLKLWK 507 (508)
T ss_pred cccc-hhhhhcccchhhhcC
Confidence 9887 799999999999995
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=207.08 Aligned_cols=246 Identities=23% Similarity=0.425 Sum_probs=211.7
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
++|+.+|..|++|+.|+++.+|+++..+ ........+|.+.|-.++|.|....++
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r-------------------------~~~~~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDR-------------------------FRKELVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchh-------------------------hhhhhcccCCCcchhhheeCCCCCcce
Confidence 3448899999999999999999997532 222335568999999999999888899
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
++++.|.+|++||++.+++...+....+.+ -+.|+|+| .++++++.|..|.+.|.++.+... .......+..++|+.
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKFEVNEISWNN 157 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccceeeeeeecC
Confidence 999999999999999999999887555554 48899999 899999999999999999876654 445556788889985
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 298 (358)
.+++|+.....|.|.|...... +++..+.+|.....||.|+|+| +++++|+.|-.+.+||+...- +.
T Consensus 158 -~nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi--C~ 224 (313)
T KOG1407|consen 158 -SNDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI--CE 224 (313)
T ss_pred -CCCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh--hh
Confidence 5667877778899999998876 8899999999999999999999 999999999999999998654 88
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 346 (358)
..+..+.-+|..+.|+.+|+ +||+|++|..|-|=++++|..+.+.-.
T Consensus 225 R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred eeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeec
Confidence 88889999999999999999 599999999999999999888766443
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4e-34 Score=229.96 Aligned_cols=247 Identities=18% Similarity=0.249 Sum_probs=205.5
Q ss_pred cC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 62 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 62 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
.| .+.+|++|+.|+.|+||++.. ...+++.+.+|..+|.+++|+.+ +..+++
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS 275 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDASFNNC-GTSFLS 275 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhhcccc-CCeeee
Confidence 45 789999999999999999963 35556678899999999999999 668999
Q ss_pred EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293 141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 220 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (358)
++.|+.+++||+++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+++++.+.....|-+.|..+.|-++
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~- 353 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE- 353 (503)
T ss_pred eecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-
Confidence 9999999999999999999997 45778999999999899999999999999999999988877788899999999995
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-eeeE
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIA 299 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~ 299 (358)
+..+++.++|+++++|+.+..- ........+.....++..+|++ .++++-+.|..|.+|.+...-+ ....
T Consensus 354 g~rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred CceEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhh
Confidence 5689999999999999999862 1122222333456789999998 8999999999999999754321 1233
Q ss_pred ecCCC--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 300 SRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 300 ~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
.+.+| .+--..+.|||||++ |++|+.||.+.+||.++-+.+...-.+
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred hhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence 45566 344567899999995 999999999999999998877665544
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=218.75 Aligned_cols=256 Identities=19% Similarity=0.293 Sum_probs=212.5
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
+..|||||+||++|+.||.|.+|+..++....... ...--.+.-+..+|.|+.|+.+ ..+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-------------------YQAqd~fMMmd~aVlci~FSRD-sEM 277 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-------------------YQAQDNFMMMDDAVLCISFSRD-SEM 277 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhh-------------------hhhhcceeecccceEEEeeccc-HHH
Confidence 34579999999999999999999998765433211 1111233457899999999999 779
Q ss_pred EEEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 216 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 216 (358)
+|+|+.||.|++|.+++|.+++.|. .|...|+|+.|+.|+ ..+++++.|.++++.-+..++......+|.+.|+.+.|
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 9999999999999999999999996 899999999999999 77999999999999999999999989999999999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE--eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
.++ +..+++++.||+|++|+.++. .++..+ .+...+|+++-.-|.++..++++...++++|-++...-
T Consensus 357 t~d-G~~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 357 TDD-GHHIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred cCC-CCeEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 995 458999999999999999987 444443 34567899999999888899999999999999987543
Q ss_pred ceeeEecC---CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293 295 PSCIASRN---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 295 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
+..+. ...+...+.+.+|.|.+ +.+.+.|+.++.|.+.+|+.-.....+.
T Consensus 427 ---VrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 427 ---VRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred ---EeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccc
Confidence 33332 23456677889999996 7778999999999999998766555443
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-33 Score=207.64 Aligned_cols=237 Identities=22% Similarity=0.299 Sum_probs=198.6
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
+++.+|.+|.+++.|.++.||-...++.+. .+.||++.|+|++.+.+ ...++
T Consensus 17 KyN~eGDLlFscaKD~~~~vw~s~nGerlG---------------------------ty~GHtGavW~~Did~~-s~~li 68 (327)
T KOG0643|consen 17 KYNREGDLLFSCAKDSTPTVWYSLNGERLG---------------------------TYDGHTGAVWCCDIDWD-SKHLI 68 (327)
T ss_pred EecCCCcEEEEecCCCCceEEEecCCceee---------------------------eecCCCceEEEEEecCC-cceee
Confidence 348999999999999999999876554433 56799999999999988 67999
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-----CCCcEEEEEcccC-------CCccceeee
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARIS-------THSGFKWAV 207 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~-------~~~~~~~~~ 207 (358)
+|+.|.++++||+++|+++..++ ...+|..+.|+++| ++++.+. ..+.|.++|++.. ++......+
T Consensus 69 TGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 69 TGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999999999999999999998 56889999999999 6555554 3567999999843 334444556
Q ss_pred cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293 208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 287 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 287 (358)
.+.++.+-|.|- +..+++|.+||.|..||++++ ...+.....|...|+.++++|+. .++++++.|.+-++
T Consensus 147 ~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 147 DSKITSALWGPL-GETIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKL 216 (327)
T ss_pred ccceeeeeeccc-CCEEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-ceEEecccCcccee
Confidence 788999999995 559999999999999999997 35666778899999999999998 99999999999999
Q ss_pred EecCCCCce-----------------------------------------------------eeEecCCCCceeEEEEEc
Q 018293 288 WDLSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 288 ~d~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~~ 314 (358)
||+++.+.+ .+....+|-++|++++|+
T Consensus 217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 998763211 223346788999999999
Q ss_pred CCCCeEEEEEccCCeEEEEEccC
Q 018293 315 EDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
|+|. .+++|+.||.|++.....
T Consensus 297 PdGk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 297 PDGK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCCc-ccccCCCCceEEEEEecc
Confidence 9999 599999999999987654
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.4e-32 Score=223.75 Aligned_cols=241 Identities=32% Similarity=0.492 Sum_probs=204.6
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+|++++|++++.||.|++|++.+.+. ...+..|...+..+.|+|+ +++++++
T Consensus 18 ~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~-~~~l~~~ 69 (289)
T cd00200 18 SPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHTGPVRDVAASAD-GTYLASG 69 (289)
T ss_pred cCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCCcceeEEEECCC-CCEEEEE
Confidence 88999999999999999999975432 2234468889999999999 5789999
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 221 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (358)
+.||.|++||+.+++.+..+..|...+.++.|++++ .++++++.++.+.+||+++.+.......+...+.+++|+|+ +
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 147 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-G 147 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc-C
Confidence 999999999999888888888898899999999996 78888888999999999977665555567788999999996 5
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 301 (358)
.++++++.+|.|++||++.. +....+..|...+.++.|+|++ ..+++++.|+.|++||++.++ ....+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--~~~~~ 215 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK--CLGTL 215 (289)
T ss_pred CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc--eecch
Confidence 57777777999999999876 5667777888899999999988 788888889999999999876 45556
Q ss_pred CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
..|...+.++.|+|++. ++++++.||.|++|++.+++.+....
T Consensus 216 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 216 RGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred hhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 57888999999999977 57777779999999999877665544
No 61
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=9.5e-32 Score=233.23 Aligned_cols=229 Identities=22% Similarity=0.304 Sum_probs=178.5
Q ss_pred cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293 71 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 150 (358)
Q Consensus 71 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 150 (358)
|+.++.|++|+... ......+.+|.+.|.+++|+|+.+.+|++|+.|++|++|
T Consensus 50 GG~~gvI~L~~~~r---------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW 102 (568)
T PTZ00420 50 GGLIGAIRLENQMR---------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW 102 (568)
T ss_pred CCceeEEEeeecCC---------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence 66778888888752 123345678999999999999766799999999999999
Q ss_pred ECCCCc--------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293 151 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 222 (358)
Q Consensus 151 d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (358)
|+.++. ++..+.+|...|.+++|+|++..++++++.|+.|++||+++++... ...+...|.+++|+|+ +.
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~Slswspd-G~ 180 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIK-GN 180 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCC-CC
Confidence 997642 3446788999999999999985567899999999999999877544 2345678999999996 45
Q ss_pred eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE-----EecCCCCcEEEEEeCCC----cEEEEecCC-
Q 018293 223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN- 292 (358)
Q Consensus 223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-----~~~~~~~~~l~~~~~dg----~i~i~d~~~- 292 (358)
++++++.|+.|++||++++ ..+..+.+|.+.+.+. .|++++ .+|++++.|+ .|+|||++.
T Consensus 181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence 8888999999999999987 6677888888765433 345776 6788877664 799999995
Q ss_pred CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 293 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.++.....+..+.+.+......++|. ++++|+.|+.|++|++..+.
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence 45544445555555555454555677 68899999999999998764
No 62
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=190.50 Aligned_cols=290 Identities=19% Similarity=0.266 Sum_probs=222.2
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCC--------CC-CceEeeceeecCCcccceeeecCCccccCCCceEEec
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG--------GD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 71 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 71 (358)
++|+|+|.+.++|.+. ..++++.|..--+ .. |.+....+......+.|..| ||+|+++|+|
T Consensus 38 v~fhp~g~lyavgsns---kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s~~geliatg 107 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNS---KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------SPCGELIATG 107 (350)
T ss_pred EEecCCCceEEeccCC---ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe-------cCccCeEEec
Confidence 4799999999999766 5667776654221 11 23333333333445567777 8999999999
Q ss_pred CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---CCcEEEEEE-cCCeE
Q 018293 72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASAS-ADKQV 147 (358)
Q Consensus 72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~-~dg~v 147 (358)
+.|.+|++.-++...+.. ......+.-|.+.|..++|-.+ ++.+|++++ .|..|
T Consensus 108 sndk~ik~l~fn~dt~~~----------------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNA----------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred CCCceEEEEecccccccc----------------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 999999998776422211 2222345569999999999533 455777765 46778
Q ss_pred EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-------ecCCeeeEEEcCCC
Q 018293 148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VAADVESLAWDPHA 220 (358)
Q Consensus 148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~ 220 (358)
.+-|..+|+..+.+.+|.+.|.++- +-++ .++++|+.|.+|++||++-...+..... ..+.|.+++..| .
T Consensus 166 y~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-s 242 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-S 242 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-C
Confidence 8888889999999999999998763 2234 7899999999999999997765543221 235689999999 4
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--Cceee
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCI 298 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~ 298 (358)
++++++|-.|....+||++.+ +.++.+..|...|.++.|+|.. .++++++.|..|++-|++.. ....+
T Consensus 243 grll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred cceeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCce
Confidence 569999999999999999998 8899999999999999999976 89999999999999999763 22344
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 55567888899999999886 48889999999999764
No 63
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.7e-31 Score=226.24 Aligned_cols=225 Identities=21% Similarity=0.253 Sum_probs=173.2
Q ss_pred cC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 62 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 62 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
+| ++++|++|+.||+|++||+.+..... ........+.+|...|.+++|+|++.++|++
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 77 78899999999999999997532211 0112344667899999999999986679999
Q ss_pred EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCC-eeeEEEcCC
Q 018293 141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-VESLAWDPH 219 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~ 219 (358)
|+.|++|++||+++++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.......|... ...+.|.++
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 9999999999999999999999999999999999999 89999999999999999988766555555543 456788886
Q ss_pred CCCeEEEE---ecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCC
Q 018293 220 AEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ 294 (358)
Q Consensus 220 ~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 294 (358)
++.++.+| +.|+.|++||+++.. .+......+ ...+....|++++ ++|++++ .|+.|++||+.+++
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~--------~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMA--------SPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCC--------CceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCc
Confidence 65444444 247999999998762 233333323 3455667789988 7777776 59999999999987
Q ss_pred ceeeEecCCCCceeEEEEEcCCC
Q 018293 295 PSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
+.....+ .+..++..++|.|..
T Consensus 294 ~~~~~~~-~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 294 LTFCSSY-SSVEPHKGLCMMPKW 315 (493)
T ss_pred eEEEeec-cCCCCCcceEecccc
Confidence 5443332 245677888998864
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=226.12 Aligned_cols=276 Identities=18% Similarity=0.293 Sum_probs=224.6
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
+++.+.-+++.|.++ .+.+|+....+ .+... ...+.+|..+ -|.++++++|...|.+.+||
T Consensus 380 ~vS~d~~~~~Sga~~------SikiWn~~t~k--ciRTi----~~~y~l~~~F-------vpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 380 CVSSDSILLASGAGE------SIKIWNRDTLK--CIRTI----TCGYILASKF-------VPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred EeecCceeeeecCCC------cEEEEEccCcc--eeEEe----ccccEEEEEe-------cCCCceEEEeccCCceEEEE
Confidence 455555555555333 56666665421 11111 1224445554 47899999999999999999
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC-----Cc
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GK 156 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~ 156 (358)
+.+...+. ...+|.+.|+.++.+|+ +..+++|+.|.+|++||..- +.
T Consensus 441 laS~~l~E---------------------------ti~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 441 LASASLVE---------------------------TIRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred eehhhhhh---------------------------hhhccccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcc
Confidence 97654443 34479999999999999 67899999999999999741 11
Q ss_pred ee--------eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293 157 CN--------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 228 (358)
Q Consensus 157 ~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 228 (358)
.. ++++ .++.|.|+.++||+ .+++++--|+++++|-+.+.+....+.+|.-+|.|+..+|+ ..++++|+
T Consensus 493 ~~k~lsl~~~rtLe-l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D-SklivTgS 569 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLE-LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD-SKLIVTGS 569 (888)
T ss_pred cceeeeeccceEEe-ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC-cCeEEecc
Confidence 11 1222 45789999999999 99999999999999999999888888999999999999995 56999999
Q ss_pred cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCcee
Q 018293 229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 308 (358)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v 308 (358)
.|.+|++|-+.-+ .+-.++.+|+..|.++.|.|.. .++.+++.|+.|+-||-..-+ .++.+.+|...|
T Consensus 570 ADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe--~iq~L~~H~~ev 637 (888)
T KOG0306|consen 570 ADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE--EIQKLDGHHSEV 637 (888)
T ss_pred CCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--hheeeccchhee
Confidence 9999999999987 7888999999999999999976 899999999999999988766 688899999999
Q ss_pred EEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 309 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
++++.+|+|.+ +++++.|..|++|.......
T Consensus 638 ~cLav~~~G~~-vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 638 WCLAVSPNGSF-VVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred eeeEEcCCCCe-EEeccCCceeEeeeccCcce
Confidence 99999999996 88999999999999866443
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-31 Score=209.84 Aligned_cols=242 Identities=25% Similarity=0.365 Sum_probs=200.3
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC--CcEEEEEE
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASAS 142 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~ 142 (358)
++.+++|++||.+++||.. .+....+.||.++|.+++|.-.+ ...|++++
T Consensus 115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 7899999999999999985 34445667899999988884331 23699999
Q ss_pred cCCeEEEEECCCCce----eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--------------------
Q 018293 143 ADKQVKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-------------------- 198 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------- 198 (358)
.|.++++|..+.++. +...++|...|.++...+++ ..+++|+.|.+|.+|+..+.
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 999999999987643 34446999999999999999 89999999999999993211
Q ss_pred -----CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293 199 -----THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 273 (358)
Q Consensus 199 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 273 (358)
.++....+|..+|.++.|++ ...+++++.|.+|+.||+.++ .....+.. ...++++..+|..
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg---------~~~~~~~~-~ksl~~i~~~~~~- 312 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG---------GLKSTLTT-NKSLNCISYSPLS- 312 (423)
T ss_pred cccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecc---------cceeeeec-CcceeEeeccccc-
Confidence 11223456889999999998 448999999999999999998 44444443 5678999999987
Q ss_pred cEEEEEeCCCcEEEEecCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC-ccccccccC
Q 018293 274 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA-GISNRFSKY 348 (358)
Q Consensus 274 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~ 348 (358)
++|++|+.|..+++||.+++.- ...+.+.+|.+.|.++.|+|...|+|++|+.|+++++||+++.+ .+..+..|.
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 8999999999999999998653 45667889999999999999999999999999999999999877 777666664
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=208.60 Aligned_cols=256 Identities=18% Similarity=0.272 Sum_probs=204.5
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
+.+|+.+++|||+.|..-.||++.+++... .+.+|+..|+++.|+.+ +.+||
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~~---------------------------eltgHKDSVt~~~Fshd-gtlLA 122 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDISTGEFAG---------------------------ELTGHKDSVTCCSFSHD-GTLLA 122 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEccCCccee---------------------------EecCCCCceEEEEEccC-ceEEE
Confidence 338999999999999999999998766332 45689999999999999 67999
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
+|+.+|.|+||+..++.....+...-..+.-+.|+|.+ .+|++|+.||.+-+|.+..........+|..++++=.|.|+
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 99999999999999998888887566778889999988 99999999999999999987766778889999999999997
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCC----------------------------------CCCccEEEe--------
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDST----------------------------------SQQSSFTLH-------- 257 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~-------- 257 (358)
+..++++..||+|++|++.++....... ..+.+....
T Consensus 202 -GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 202 -GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred -CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 5589999999999999999875311000 001111111
Q ss_pred ecCCceeEEEecCCCC--cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 258 AHDKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 258 ~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.+...+.++.+.|... .+.|+|+.||+|.|||+...+ ++..-.|..+|..+.|.+ ..+ |++++.+|.|+.||.
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDA 355 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cch-heeeccCceEEeeec
Confidence 1222333444443221 478899999999999999886 334456778899999999 555 778999999999999
Q ss_pred cCCCccccccccCcC
Q 018293 336 LSDAGISNRFSKYSK 350 (358)
Q Consensus 336 ~~~~~~~~~~~~~~~ 350 (358)
++|+++..+.+|...
T Consensus 356 RtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMG 370 (399)
T ss_pred cccceEEEEecCchh
Confidence 999999988888654
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=202.89 Aligned_cols=277 Identities=19% Similarity=0.309 Sum_probs=217.6
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL 82 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~ 82 (358)
+.|+|-.|+.++.++ .--+-+..++.-.-.+..|+.. .|. ...+.+..+.|+++.|=+-+|||.
T Consensus 25 itp~g~flisa~kd~-----~pmlr~g~tgdwigtfeghkga--------vw~---~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 25 ITPDGYFLISASKDG-----KPMLRNGDTGDWIGTFEGHKGA--------VWS---ATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred CCCCceEEEEeccCC-----CchhccCCCCCcEEeeeccCcc--------eee---eecCchhhhhhhhcccchhhhhhh
Confidence 457888888887765 2112222222222334444322 231 122456667889999999999999
Q ss_pred ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeee
Q 018293 83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL 161 (358)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~ 161 (358)
-+++.+..+ .|+.-|.+++|+.+ .++|++|+.+..++|||++..+ +...+
T Consensus 89 ~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 89 VTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred hhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHHhhhhhccCCCCCchhh
Confidence 887766532 48889999999999 7799999999999999998664 57788
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
.+|.+.|..+-|.... +.++++..|++|++||.+++.... ......+|+++.+++++ .+++....+.|.+||..+.
T Consensus 140 ~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDG--RILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCC--CEEEEecCceeEEeccccc
Confidence 9999999999999887 788899999999999999998776 56678899999999965 4666667889999999886
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 321 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 321 (358)
..+..+.. ...|.+...+|+. ..+++|++|..++.||..+++.+... ..+|.++|.|+.|+|+|. +.
T Consensus 216 ---------~~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE-~y 282 (334)
T KOG0278|consen 216 ---------GLLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGE-LY 282 (334)
T ss_pred ---------cceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCc-ee
Confidence 44544443 4568899999987 89999999999999999999843321 478999999999999999 79
Q ss_pred EEEccCCeEEEEEccCCCcc
Q 018293 322 AIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 322 ~~~~~dg~i~vw~~~~~~~~ 341 (358)
++|+.||+|++|.+..++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999999876654
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-32 Score=197.53 Aligned_cols=220 Identities=16% Similarity=0.183 Sum_probs=195.7
Q ss_pred cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEE
Q 018293 114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 193 (358)
Q Consensus 114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 193 (358)
....+..|+++|.++.|+-+ +++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+ ..|++++.|..+.+|
T Consensus 9 r~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEE
Confidence 34456789999999999999 6799999999999999999999999999999999999999998 789999999999999
Q ss_pred EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293 194 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 273 (358)
Q Consensus 194 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 273 (358)
|+.+++......+|.+.|+.++|+. ....+++|+-|..+++||.++... ++++.+......|.++..+.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-------ePiQildea~D~V~Si~v~~--- 155 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-------EPIQILDEAKDGVSSIDVAE--- 155 (307)
T ss_pred EcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-------CccchhhhhcCceeEEEecc---
Confidence 9999999998999999999999998 456999999999999999998754 77888888888999999984
Q ss_pred cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293 274 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 351 (358)
Q Consensus 274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 351 (358)
..+++|+.||+++.||++.++. .. .....+|++++|+++++. ...++.|+++++.|-.+|+.+....++....
T Consensus 156 heIvaGS~DGtvRtydiR~G~l--~s--Dy~g~pit~vs~s~d~nc-~La~~l~stlrLlDk~tGklL~sYkGhkn~e 228 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTL--SS--DYFGHPITSVSFSKDGNC-SLASSLDSTLRLLDKETGKLLKSYKGHKNME 228 (307)
T ss_pred cEEEeeccCCcEEEEEeeccee--eh--hhcCCcceeEEecCCCCE-EEEeeccceeeecccchhHHHHHhcccccce
Confidence 7899999999999999999972 22 233568999999999996 5568999999999999999998877776543
No 69
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-32 Score=229.12 Aligned_cols=296 Identities=20% Similarity=0.225 Sum_probs=230.7
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCC-CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
...++-+.|++++. +.+++|-.+.....+ .+++...+.........++|-. -+.++|||++..|.|.+|
T Consensus 46 s~nr~~~qiv~AGr----s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~------~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 46 SVNRDINQIVVAGR----SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ------LYSNLIATCSTNGVISVW 115 (839)
T ss_pred eecCCcceeEEecc----cceeeEeeCcccCCcceeeecccccceeeehhhccccc------chhhhheeecCCCcEEEE
Confidence 34566777777744 446777766654221 2223222223333344677742 367899999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|+... .+.+....+..|+..++++.|++...++|++|+.||+|++||++..+...+
T Consensus 116 dlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 116 DLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred ecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 99731 134455577889999999999998889999999999999999999988889
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 239 (358)
+.+....|+.++|+|..+..|+++...|.+++||++..... ..+..|.++|.|+.|+| +..+||+|+.|+.|+|||+.
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEecc
Confidence 98889999999999988899999999999999999987643 44668999999999999 66799999999999999998
Q ss_pred cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
..+. .+...+. ...++.++.|-|.....|++++. |-.|+|||++-.- ++...+..|...++.++|....
T Consensus 251 ~~~~-------~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 251 DSRA-------KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred CCCc-------cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCccccceeccCCC
Confidence 7632 3333333 35789999999998788888765 7779999998653 4667788899999999998755
Q ss_pred CeEEEEEccCCeEEEEEccCCCcc
Q 018293 318 PFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 318 ~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
...+.+++.||+|..-.+++....
T Consensus 322 ~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred ceeeEeecCccHHHHhhhhcccCh
Confidence 557889999998876665554433
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=228.54 Aligned_cols=275 Identities=26% Similarity=0.389 Sum_probs=225.3
Q ss_pred CcEEEEEEecCCCceEEEEEEeccCCCCCce-EeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 7 DAVIVCARNEDDVSHLEVYILEESDGGDPNL-YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
++.++++..+. .+.+|+...+..... ...|...+. +++. ..-+.+|++|+.|.+++|||..++
T Consensus 218 ~~~~~~~s~~~-----tl~~~~~~~~~~i~~~l~GH~g~V~----~l~~-------~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 218 DGFFKSGSDDS-----TLHLWDLNNGYLILTRLVGHFGGVW----GLAF-------PSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCeEEecCCCc-----eeEEeecccceEEEeeccCCCCCce----eEEE-------ecCCCEEEEEecCCcEEeEecCCC
Confidence 55666665554 457777776544333 444543332 3332 345889999999999999999876
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 165 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 165 (358)
++.. .+.+|...|.++...+. ++++|+.|.+|++|+++++.++..+.+|.
T Consensus 282 ~C~~---------------------------~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 282 ECTH---------------------------SLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred cEEE---------------------------EecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEecccc
Confidence 6544 56689999999998755 78899999999999999999999999999
Q ss_pred cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC
Q 018293 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 245 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 245 (358)
.+|.++..+ + .++++|+.|++|++||+.+.+......+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 332 ~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~--- 403 (537)
T KOG0274|consen 332 GPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR--- 403 (537)
T ss_pred ccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh---
Confidence 999999998 4 78999999999999999999999989999999999988763 689999999999999999862
Q ss_pred CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC-CCceeEEEEEcCCCCeEEEEE
Q 018293 246 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIG 324 (358)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~ 324 (358)
+++..+.+|..-+.++.+.. ++|++++.|+.|++||..+++ +.....+ |.+.|..+++. .. .++++
T Consensus 404 -----~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~~~--~~-~il~s 470 (537)
T KOG0274|consen 404 -----KCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALALG--KE-EILCS 470 (537)
T ss_pred -----hhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEeecC--cc-eEEEE
Confidence 67888899998887776663 799999999999999999998 5556666 67888888887 23 57789
Q ss_pred ccCCeEEEEEccCCCccccccccC
Q 018293 325 GSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 325 ~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
+.||.+++||+.+++...+.+...
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred ecCCeeEEEecccCchhhhhhhcc
Confidence 999999999999999988775443
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.7e-31 Score=232.49 Aligned_cols=306 Identities=19% Similarity=0.282 Sum_probs=223.7
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEecc------CCCCCceEeece--eecCCcccceeeecCCccccCCCceEEecC
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEES------DGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVGS 72 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 72 (358)
++++|++..+++|+.-.| +.+. +|+.. .....++..+-. ........|+.| +|||++||+|+
T Consensus 19 Idv~pdg~~~aTgGq~~d-~~~~--iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-------S~dG~~lAsGS 88 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLD-GGIV--IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-------SPDGSYLASGS 88 (942)
T ss_pred EEecCCceeEecCCcccc-ccce--eeccccccchhhhhhcccchhheeeccccCceeEEEE-------CCCCCeEeecc
Confidence 478999999999973222 2222 44322 111111111111 112333446666 99999999999
Q ss_pred CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293 73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 152 (358)
Q Consensus 73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 152 (358)
.|+.|.||+... .... ...+... .......++.+..+.+|...|..++|+|+ +.+|++++.|++|.+||.
T Consensus 89 DD~~v~iW~~~~-~~~~--~~fgs~g------~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 89 DDRLVMIWERAE-IGSG--TVFGSTG------GAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CcceEEEeeecc-cCCc--ccccccc------cccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEcc
Confidence 999999999874 1111 1111000 01234668888899999999999999998 779999999999999999
Q ss_pred CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee------eecCCeeeEEEcCCCCCeEEE
Q 018293 153 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHAEHSFVV 226 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~ 226 (358)
.+.+.+..+.+|...|..+.|.|-| ++|++-+.|++|++|++.+-....... ........+.|+|+|. +|++
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las 236 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLAS 236 (942)
T ss_pred ccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecc
Confidence 9999999999999999999999999 999999999999999976533222111 2234578899999765 6666
Q ss_pred Ee-c---CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC--------C----Cc----EEEEEeCCCcEE
Q 018293 227 SL-E---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATGSTDKMVK 286 (358)
Q Consensus 227 ~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------~----~~----~l~~~~~dg~i~ 286 (358)
.. . -..+.|.+-.+. +.-..+-+|..++.+++|+|. | ++ .+|+|+.|++|.
T Consensus 237 ~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred hhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 42 2 336778877665 667789999999999999981 1 11 688999999999
Q ss_pred EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
||.....+|..+ ...-....|..++|+|||.. |.+++.||+|.+..++..+
T Consensus 308 VW~T~~~RPl~v-i~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 308 VWNTALPRPLFV-IHNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCCCchhh-hhhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcchHH
Confidence 999977776433 23334678999999999995 6678999999999997643
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-30 Score=195.68 Aligned_cols=249 Identities=18% Similarity=0.276 Sum_probs=195.9
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++.|+++|.+|++++.|.+++|||..++.... ....++-.|..++|... .+.
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---------------------------ti~skkyG~~~~~Fth~-~~~ 70 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---------------------------TINSKKYGVDLACFTHH-SNT 70 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCCceee---------------------------EeecccccccEEEEecC-Cce
Confidence 34559999999999999999999998655544 23345667888888766 445
Q ss_pred EEEEEc--CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293 138 LASASA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215 (358)
Q Consensus 138 l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 215 (358)
++.++. |.+|+..++.+.+.++.+.+|...|.+++.+|-+ ..+++++.|++|++||++..++..... ...-..++
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~A 147 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAA 147 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCccee
Confidence 556665 8899999999999999999999999999999998 889999999999999999777655332 23345678
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
|+|. +-++|++...+.|++||+|.-.. .+...+. ......+.+.|+|+| ++|+.++..+.+++.|.-+
T Consensus 148 fDp~-GLifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 148 FDPE-GLIFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD 218 (311)
T ss_pred ECCC-CcEEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC
Confidence 9995 55788887777999999998643 2333332 336678999999999 8888888899999999999
Q ss_pred CCceeeEecCCCCc-eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 293 NQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 293 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
+............+ .-...+|+||+++ +.+|+.||+|.+|+++++..+...-+.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 88444333333222 2257889999996 778999999999999999988776664
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-31 Score=209.22 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=203.6
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
+.||++|+|||+++.|.+..+|++... ...++.+++.+|..+|..+.|||| .++|
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl~~tlvgh~~~V~yi~wSPD-dryL 284 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKLKKTLVGHSQPVSYIMWSPD-DRYL 284 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecC------------------------cceeeeeeeecccCceEEEEECCC-CCeE
Confidence 357999999999999999999998521 235667788999999999999999 6688
Q ss_pred EEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
++|+.|..+.+||+.+|.+...+. ++...+.+++|.||+ ..+++|+.|+.+..||+...............|.+++..
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc
Confidence 889999999999999999887775 346789999999999 889999999999999998765444333344679999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 297 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 297 (358)
+||. .+++.+.|..|++|+.... .. ..+.....+|+++.++.++ +++++.-.+..+.+||+...+ .
T Consensus 364 ~Dgk-~vl~v~~d~~i~l~~~e~~---------~d-r~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~--l 429 (519)
T KOG0293|consen 364 YDGK-YVLLVTVDKKIRLYNREAR---------VD-RGLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK--L 429 (519)
T ss_pred CCCc-EEEEEecccceeeechhhh---------hh-hccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh--H
Confidence 9765 6777779999999999864 22 2233446789999999998 899998899999999999665 5
Q ss_pred eEecCCCCc--eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293 298 IASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 298 ~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
+..+.+|.. .+..-+|-.-...++++|++|+.|+||+..+++.+..+-+|.
T Consensus 430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence 666677754 355556765543469999999999999999999998877765
No 74
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-30 Score=192.64 Aligned_cols=243 Identities=25% Similarity=0.379 Sum_probs=195.7
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-CCCCCcEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASA 141 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~ 141 (358)
--|++|||++.|++|+|+.+..... ..+...|.||.++|..++| +|..+.+||++
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEe
Confidence 4699999999999999999975332 2445577899999999999 46668899999
Q ss_pred EcCCeEEEEECCCCc--eeeeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCC---CccceeeecCCeeeEE
Q 018293 142 SADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLA 215 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~ 215 (358)
+.||.|.||.-++++ .......|...|++++|.|.+ +-.|++++.||.|.+.+.+... .......|.-.+++++
T Consensus 77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 999999999988773 345567899999999999965 2578889999999999988762 2334567888999999
Q ss_pred EcCC---C----------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC---CcEEEEE
Q 018293 216 WDPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATG 279 (358)
Q Consensus 216 ~~~~---~----------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~~l~~~ 279 (358)
|.|. + .+.|++|+.|..|+||+..+.. ......+.+|...|+.++|.|.- ..+|+++
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9984 1 1469999999999999998863 24455689999999999999954 3589999
Q ss_pred eCCCcEEEEecCCC-CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 280 STDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 280 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
+.||++.||-.+.. ++.....+......+.++.||..|. +|+.++.|+.|.+|.-..
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence 99999999987643 2222233344567899999999999 699999999999997543
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=4.1e-30 Score=204.41 Aligned_cols=278 Identities=18% Similarity=0.243 Sum_probs=229.2
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|.+.|.-+.+++|+.+. .+.+|+...+....++..|...+ . ++.|+++...+++++.|-.|+||
T Consensus 225 ld~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~kki-------~----~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHTKKI-------T----SVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred EeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcceEE-------E----EEEeccchhheeecCCcceEEee
Confidence 34667778888997776 67778877766666776665444 2 34559999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
........ .....|..+|+.+..+|. +.||++++.||+..+.|++++.++..
T Consensus 289 s~~~~s~~---------------------------~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 289 SVPLSSEP---------------------------TSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred ccccccCc---------------------------cccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEE
Confidence 98643322 234469999999999999 67999999999999999999988776
Q ss_pred ecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 161 LEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 161 ~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
... ..-.+++.+|+||| .+|.+|..||.+++||+........+.+|.++|..++|+. ++++++++++|+.|++||+
T Consensus 341 vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDL 418 (506)
T ss_pred EeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEe
Confidence 653 23458999999999 9999999999999999999888877888999999999998 5779999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 239 RTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
|+.+ ....+... ..++.++.|.+.| .+|+.++.|=.|++++-.+.+...+..+..|.+..+.+.|....
T Consensus 419 RKl~---------n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 419 RKLK---------NFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred hhhc---------ccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 9873 33333322 2379999999998 89999888888888887777777888888899899999999998
Q ss_pred CeEEEEEccCCeEEEEEc
Q 018293 318 PFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 318 ~~~l~~~~~dg~i~vw~~ 335 (358)
++ +++++.|..++++.+
T Consensus 489 q~-l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QY-LASTSMDAILRLYAL 505 (506)
T ss_pred eE-EeeccchhheEEeec
Confidence 85 999999999998864
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=3.1e-30 Score=196.00 Aligned_cols=246 Identities=22% Similarity=0.319 Sum_probs=189.6
Q ss_pred CccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293 58 PLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 58 ~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 136 (358)
+++||| ...++++|+.||+||+|+++......+ .....|.++|.+++|+.+ +.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsdd-gs 85 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDD-GS 85 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccC-Cc
Confidence 345688 456777999999999999975322221 234469999999999999 57
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC-cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 215 (358)
.+++|+.|+.+++||+.+++ +..+..|..+|.++.|-+... ..|++|+.|.+|++||++....+. .......+.++.
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~D 163 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAAD 163 (347)
T ss_pred eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehh
Confidence 99999999999999999995 566777999999999987652 488999999999999999877665 556677788776
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
.-. .+++++..+..|.+|+++++.... ......-.-.++|++..++. ...+.|+-+|.+.|..+..+.+
T Consensus 164 v~~---pm~vVata~r~i~vynL~n~~te~-------k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 164 VLY---PMAVVATAERHIAVYNLENPPTEF-------KRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred ccC---ceeEEEecCCcEEEEEcCCCcchh-------hhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc
Confidence 643 388999999999999998763211 11111123457899999887 5558999999999999988644
Q ss_pred eeeEecCCCC---------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 296 SCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 296 ~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
..-+.+.-|. ..|++++|+|... .|+++|.||++.+||-.....+..
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence 3344444443 3588999999877 599999999999999876666554
No 77
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.6e-31 Score=224.44 Aligned_cols=258 Identities=20% Similarity=0.335 Sum_probs=211.1
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+++-..++.++. ..+.||.++............ ...+.-.-.+..+.|..-..++||++
T Consensus 48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~--------------------k~kqn~~~S~~DVkW~~~~~NlIAT~ 106 (839)
T KOG0269|consen 48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRF--------------------KTKQNKFYSAADVKWGQLYSNLIATC 106 (839)
T ss_pred cCCcceeEEecc-cceeeEeeCcccCCcceeeec--------------------ccccceeeehhhcccccchhhhheee
Confidence 577777777764 478888887544433222110 00011223466788886667899999
Q ss_pred EcCCeEEEEECCC---CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 142 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 142 ~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
+..|.|.+||+.. .+.+..|..|...++++.|++..+++|++|+.||+|++||++..+...........|..+.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 9999999999987 5667788999999999999999999999999999999999999988887788888999999999
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 298 (358)
..++.|+++.+.|.+++||+|.. .++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+.+.+....
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence 88999999999999999999987 47888899999999999999977 9999999999999999998765444
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEc--cCCeEEEEEccCCCccccccccCcC
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
..+. ...+|.+++|-|..++.||+++ .|-.|+|||++........+..+..
T Consensus 258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 4443 3578999999999999899887 4678999999887766666655543
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=8.8e-30 Score=193.56 Aligned_cols=270 Identities=18% Similarity=0.297 Sum_probs=207.4
Q ss_pred CcccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 1 MTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
|+||| .++++++++.++ .|.+|+...... +...-...++.+++|+.| +.||..+++|+.|+.+++
T Consensus 33 l~FSP~~~~~~~A~SWD~-----tVR~wevq~~g~--~~~ka~~~~~~PvL~v~W-------sddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDG-----TVRIWEVQNSGQ--LVPKAQQSHDGPVLDVCW-------SDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred eEeccccCceEEecccCC-----ceEEEEEecCCc--ccchhhhccCCCeEEEEE-------ccCCceEEeeccCCceEE
Confidence 68999 677777887776 666666655211 111122345677889888 789999999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCCCcee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
||+.+++... ...|.++|.++.|-+.. -..|++|+.|++|+.||++...++
T Consensus 99 wDL~S~Q~~~----------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 99 WDLASGQVSQ----------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred EEccCCCeee----------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 9998764332 33599999999997652 238999999999999999999988
Q ss_pred eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293 159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 236 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~ 236 (358)
.++. ..+.++++..-. .+++++..+..|.+|+++.+.... ......-.+.|++..++.. ..+.|+-+|.+.+.
T Consensus 151 ~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 151 ATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQ 225 (347)
T ss_pred eeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEE
Confidence 8887 567788877654 578889999999999997664332 2234556789999988655 55999999999999
Q ss_pred EcccCCCCCCCCCCCccEEEeecC---------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce
Q 018293 237 DIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 307 (358)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 307 (358)
.+..+.. ..-+.++.|. ..|++|+|+|.. ..|+|.+.||++.+||-.... .+...+.|..+
T Consensus 226 ~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk~s~~~~qp 295 (347)
T KOG0647|consen 226 YIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLKTSETHPQP 295 (347)
T ss_pred ecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhhccCcCCCc
Confidence 9987532 3445566665 258899999976 799999999999999987766 46677889999
Q ss_pred eEEEEEcCCCCeEEEEEccC
Q 018293 308 VFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 308 v~~~~~~~~~~~~l~~~~~d 327 (358)
|++.+|+.+|.++..+.+.|
T Consensus 296 Itcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cceeEecCCCCEEEEEeecc
Confidence 99999999999644444443
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=6.8e-31 Score=200.52 Aligned_cols=255 Identities=19% Similarity=0.297 Sum_probs=199.0
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCc-CceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEV-QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 136 (358)
+.+||+||.++|||+.|..|+|.|++..-.. .+..... .........+..+..|..+|+++.|+|. ..
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~----------~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ 185 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMIS----------GDTQARHPVIRTLYDHVDEVNDLDFHPR-ET 185 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhcc----------CCcccCCceEeehhhccCcccceeecch-hh
Confidence 3457999999999999999999998732100 0100000 0111234667788899999999999999 78
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecCCe
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADV 211 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i 211 (358)
.|++|+.|++|+++|+......+.++ ....+|.++.|+|.| .+++.|.....+++||+++.++.. ....|.+.|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999997653333222 245789999999999 899999999999999999877543 234678899
Q ss_pred eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eec-CCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293 212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWD 289 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d 289 (358)
+++.+++. +++.++++.||.|++||--+. +++..+ ..| ...|.+..|..++ +++++.+.|..+++|.
T Consensus 265 ~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 265 TQVRYSST-GSLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWE 333 (430)
T ss_pred eEEEecCC-ccEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeee
Confidence 99999995 569999999999999998876 566555 345 4578999999998 9999999999999999
Q ss_pred cCCCCceeeE-----------------------------------------------ecCCCCceeEEEEEcCCCCeEEE
Q 018293 290 LSNNQPSCIA-----------------------------------------------SRNPKAGAVFSVAFSEDSPFVLA 322 (358)
Q Consensus 290 ~~~~~~~~~~-----------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~ 322 (358)
+.+++++... ...+|.+.+..+.-+|.+. .++
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~Fm 412 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFM 412 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-cee
Confidence 9886532110 1135777888899999999 599
Q ss_pred EEccCCeEEEEEcc
Q 018293 323 IGGSKGKLEIWDTL 336 (358)
Q Consensus 323 ~~~~dg~i~vw~~~ 336 (358)
+|+.|..+++|--+
T Consensus 413 TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARFWYRR 426 (430)
T ss_pred eecccceeeeeeec
Confidence 99999999999643
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-29 Score=190.83 Aligned_cols=229 Identities=19% Similarity=0.292 Sum_probs=184.7
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEE
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASAS 142 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 142 (358)
++.++|+|+.|-+|+|||+....+.. .+-.|.+.|+++.|.+.. .+.|++|+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg---------------------------~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLG---------------------------ILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhc---------------------------ceeccccceEEEEecCCcchhheeeec
Confidence 79999999999999999997544333 444699999999999872 12789999
Q ss_pred cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 222 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (358)
.||.|.+|+....+++..+++|...|+.++.+|.+ .+.++.+.|+.++.||+-.++... ........+.+.|+|.++
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd- 181 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD- 181 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence 99999999999999999999999999999999999 899999999999999998877544 344455556699999766
Q ss_pred eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293 223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 302 (358)
Q Consensus 223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 302 (358)
+|+.+..+ .|-+|.+.+. .....+. ....+.++.|.. +..|++|..|+.|.+||..+.. +...+.
T Consensus 182 ~F~v~~~~-~i~i~q~d~A---------~v~~~i~-~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~ 246 (362)
T KOG0294|consen 182 HFVVSGRN-KIDIYQLDNA---------SVFREIE-NPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL 246 (362)
T ss_pred EEEEEecc-EEEEEecccH---------hHhhhhh-ccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence 56665544 5889998875 2222222 224466666664 3799999999999999998865 577788
Q ss_pred CCCceeEEEEE--cCCCCeEEEEEccCCeEEEEEccCC
Q 018293 303 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 303 ~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
+|...|-.+.+ .|++. +|++++.||.|+|||+...
T Consensus 247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence 99999999985 34565 6999999999999999876
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=222.80 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=206.6
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
+.++++++.|++|++||..++..+. ..+.+|.+.|.++++.. ++.++++|+.|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~--------------------------~~l~GH~g~V~~l~~~~-~~~~lvsgS~D 270 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLIL--------------------------TRLVGHFGGVWGLAFPS-GGDKLVSGSTD 270 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEE--------------------------eeccCCCCCceeEEEec-CCCEEEEEecC
Confidence 6789999999999999987543322 24779999999999987 46799999999
Q ss_pred CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293 145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 224 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (358)
.++++||..+|++...+.+|.+.+.++...+ ..+++|+.|.+|++|++.++.......+|..+|.++..+ +.++
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL 344 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence 9999999999999999999999999998876 568889999999999999999888777799999999997 4599
Q ss_pred EEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC-CceeeEecCC
Q 018293 225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-QPSCIASRNP 303 (358)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~ 303 (358)
++|+.|+.|++||..+. +++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. + ++..+.+
T Consensus 345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~--c~~tl~~ 411 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRK--CIHTLQG 411 (537)
T ss_pred EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhh--hhhhhcC
Confidence 99999999999999987 899999999999999988864 68999999999999999998 5 7888999
Q ss_pred CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
|...+..+.+. ++ .|++++.||.|++||..+++++....++
T Consensus 412 h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 412 HTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred Ccccccccccc--cc-eeEeccccccEEEeecccCceeeeeccC
Confidence 99888666654 44 5999999999999999999998877664
No 82
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.3e-29 Score=216.20 Aligned_cols=232 Identities=15% Similarity=0.221 Sum_probs=168.5
Q ss_pred CcccceeeecCCccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293 47 AFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 125 (358)
Q Consensus 47 ~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 125 (358)
..+.++.| +|+ +++||+|+.||.|+|||+.+...... ........+.+|...|
T Consensus 75 ~~V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 75 SSILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKI 128 (568)
T ss_pred CCEEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcE
Confidence 34456666 776 78999999999999999975322100 0011223456899999
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
.+++|+|++..+|++++.|++|++||+++++.+..+. |...|.+++|+|+| .+|++++.|+.|++||+++++......
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999999966677899999999999999998777776 56789999999999 889999999999999999987766555
Q ss_pred eecCCeee-----EEEcCCCCCeEEEEecC----CeEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCc
Q 018293 206 AVAADVES-----LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN 274 (358)
Q Consensus 206 ~~~~~i~~-----~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~ 274 (358)
.|.+.+.+ ..|++++ .++++++.| +.|++||++... .++.... .+.+.+.. .+.++.+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L~p-~~D~~tg~ 276 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPLIP-HYDESTGL 276 (568)
T ss_pred cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccceEE-eeeCCCCC
Confidence 66665433 2345644 467776655 379999999641 3444332 22333333 33344338
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
++++|+.|+.|++|++..+....+..+. +..++.+++|.|..
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 8999999999999999877543333333 56788899999975
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=216.90 Aligned_cols=241 Identities=22% Similarity=0.347 Sum_probs=205.5
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
|.+++|.+|+.||.|++|++....... .......++.|.+.|+.+....+ ++.|++++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------------s~~~~asme~HsDWVNDiiL~~~-~~tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------------STPYIASMEHHSDWVNDIILCGN-GKTLISAS 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc---------------------ccchhhhhhhhHhHHhhHHhhcC-CCceEEec
Confidence 678899999999999999987432211 11134567789999999999988 56899999
Q ss_pred cCCeEEEEECCCC--ceeeeecccccceeeEEE-cCCCCcEEEEEeCCCcEEEEEcccCCC--cc--------ce-eeec
Q 018293 143 ADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--SG--------FK-WAVA 208 (358)
Q Consensus 143 ~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~--------~~-~~~~ 208 (358)
.|-+|++|+...+ -+..++..|.+.|.|++. .++. .++++|+.|+.|.+||++++.. .. .. .++.
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9999999999877 578889999999999999 5555 8999999999999999997632 11 11 1456
Q ss_pred CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 288 (358)
Q Consensus 209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 288 (358)
..|.+++.++.+ ..+++|+..+.+++||.++. +.+..+.+|+..|..+..++|| ..+++++.||+|++|
T Consensus 172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLW 240 (735)
T ss_pred cceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEee
Confidence 789999999954 68999999999999999998 7788899999999999999999 899999999999999
Q ss_pred ecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 289 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
|+...+ ++.++..|...|+++..+|+-.+ +.+|+.||.|..=|+++...
T Consensus 241 dLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 241 DLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchh
Confidence 998877 78889999999999999999885 88999999999999988543
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.5e-29 Score=202.38 Aligned_cols=253 Identities=23% Similarity=0.419 Sum_probs=198.8
Q ss_pred cCCCcEEEEEEecCCCceEEEEEEeccCCC-CC----------ceEeeceeecCCcccceeeecCCccccCC-CceEEec
Q 018293 4 NPNDAVIVCARNEDDVSHLEVYILEESDGG-DP----------NLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVG 71 (358)
Q Consensus 4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g 71 (358)
-|+.+.|+++...+ + .+++|+..... .+ .+..|++. ...+.| ++. .-.|++|
T Consensus 133 mPQnp~iVAt~t~~--~--dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-----g~glsW-------n~~~~g~Lls~ 196 (422)
T KOG0264|consen 133 MPQNPNIVATKTSS--G--DVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-----GYGLSW-------NRQQEGTLLSG 196 (422)
T ss_pred CCCCCcEEEecCCC--C--CEEEEEeccCCCcccccccCCCceEEEeeccc-----cccccc-------ccccceeEeec
Confidence 47677777765554 2 66666654321 11 23344431 224556 443 4578999
Q ss_pred CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293 72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 151 (358)
Q Consensus 72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 151 (358)
+.|+.|++||++...... +...+...+.+|...|..++|++....+|++++.|+.+.|||
T Consensus 197 ~~d~~i~lwdi~~~~~~~--------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKED--------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred cCCCcEEEEeccccccCC--------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 999999999998644321 224455577799999999999998888999999999999999
Q ss_pred CC--CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293 152 VA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSL 228 (358)
Q Consensus 152 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~ 228 (358)
++ +.++.....+|..++.|++|+|.+..+|++|+.|++|.+||+|..... .....|...|.++.|+|+....+++++
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 99 566777888999999999999998899999999999999999987654 445678999999999999999999999
Q ss_pred cCCeEEEEEcccCCCCC-----CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 229 EDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 229 ~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
.|+.+.+||+..-.... ......+++.-.+|...|..+.|+|+.+..|++.+.|+.+.||++..
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999999997653321 12223556777899999999999999988999999999999999864
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-28 Score=187.18 Aligned_cols=276 Identities=17% Similarity=0.257 Sum_probs=207.9
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC--CCeEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM--EPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~ 78 (358)
|+|+++|..++++..++ .+.+|+...+........++.... .+.+ ......++.++. |.+|+
T Consensus 20 l~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~~----~~~F-------th~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGVD----LACF-------THHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred EEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeeccccccc----EEEE-------ecCCceEEEccCCCCCceE
Confidence 57999999999986666 899999888744444333322221 2222 344445555554 88999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
.-++.+.+. ++.+.||...|+.|+.+|- +..+++++.|++|++||++..++.
T Consensus 84 yLsl~dNky---------------------------lRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 84 YLSLHDNKY---------------------------LRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred EEEeecCce---------------------------EEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCc
Confidence 999976443 4467799999999999999 579999999999999999988887
Q ss_pred eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-cee----eecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293 159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW----AVAADVESLAWDPHAEHSFVVSLEDGTI 233 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~----~~~~~i~~~~~~~~~~~~~~~~~~dg~i 233 (358)
..+.....+ .++|.|+| -+++++.....|++||++.-.... ... ......+.+.|+|+| ..++.++..+.+
T Consensus 136 g~l~~~~~p--i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~ 211 (311)
T KOG1446|consen 136 GLLNLSGRP--IAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFI 211 (311)
T ss_pred eEEecCCCc--ceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcE
Confidence 777543333 47899999 888888888899999999763321 111 235678999999965 578888899999
Q ss_pred EEEEcccCCCCCCCCCCCccEEEeecCCce---eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC-CCceeE
Q 018293 234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVF 309 (358)
Q Consensus 234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~ 309 (358)
++.|.-.+ .....+..+...- .+.+|.|++ +++++|+.||+|.+|+++++.. +..+.+ +.+++.
T Consensus 212 ~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 212 YLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVS 279 (311)
T ss_pred EEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCcc
Confidence 99999988 5566666554332 577899999 9999999999999999999984 444444 788999
Q ss_pred EEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 310 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 310 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
++.|+|.-. +++++ +..+.+|=....+
T Consensus 280 ~~~fnP~~~-mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 280 CVRFNPRYA-MFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred ccccCCcee-eeeec--CceEEEEeccccc
Confidence 999999876 56655 4578888765433
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-30 Score=207.86 Aligned_cols=241 Identities=20% Similarity=0.238 Sum_probs=197.6
Q ss_pred ccccCCCc--eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293 59 LKDREKGN--FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 59 ~~~s~~~~--~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 136 (358)
++|||... +.+|++ -.+.||+..+..... .+......|+++.|-.| +.
T Consensus 32 l~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k---------------------------~~srFk~~v~s~~fR~D-G~ 81 (487)
T KOG0310|consen 32 LCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRK---------------------------TFSRFKDVVYSVDFRSD-GR 81 (487)
T ss_pred EecCCCCCCceEEecc--cEEEEEecchhhhhh---------------------------hHHhhccceeEEEeecC-Ce
Confidence 34566432 344443 579999986533322 23346688999999999 67
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 216 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 216 (358)
+||+|...|.|+++|+++...++.+.+|+.++..+.|+|.++..+++|+.|+.+++||+.+........+|+..|.|.+|
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 99999999999999988877889999999999999999999899999999999999999988865567789999999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293 217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 296 (358)
+|.++.++++|+.||.|++||++.. .....-..|..+|.++.+-|.| ..+++++ ...|+|||+.++..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~---------~~~v~elnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~q- 229 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSL---------TSRVVELNHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQ- 229 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccC---------CceeEEecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCce-
Confidence 9988889999999999999999986 2333444689999999999987 7888876 45799999997653
Q ss_pred eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
.+.....|...|+|+++..++. .|++|+-||.+++||+.+-+.+.
T Consensus 230 ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEE
Confidence 3344455889999999999998 58899999999999987766554
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=200.03 Aligned_cols=231 Identities=22% Similarity=0.302 Sum_probs=196.4
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
.+..+.++||+.|..+.++|...++. ...+.||...|+.+.++|+ ...++++
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------l~~~~Gh~kki~~v~~~~~-~~~v~~a 279 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQI---------------------------LATLKGHTKKITSVKFHKD-LDTVITA 279 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhh---------------------------hhhccCcceEEEEEEeccc-hhheeec
Confidence 34467899999999999999876444 3467899999999999999 6789999
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee--ecCCeeeEEEcCC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPH 219 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~ 219 (358)
+.|..|+||.............|..+|+.+..+|.| .+|++++.|++..+.|++++........ ..-.+++.+|+||
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred CCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC
Confidence 999999999998888888888999999999999999 8999999999999999999887653333 2235899999995
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
+.+|.+|+.||.|++||+.++ ..+..+.+|.++|..++|+.+| .+|+++++|+.|++||+|..+.....
T Consensus 359 -gLifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 359 -GLIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred -ceEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccccee
Confidence 569999999999999999987 6788899999999999999998 99999999999999999988754444
Q ss_pred ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~ 334 (358)
..... ..+.++.|.+.|.| |+.++.|=.|++++
T Consensus 428 ~l~~~-~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 428 QLDEK-KEVNSLSFDQSGTY-LGIAGSDLQVYICK 460 (506)
T ss_pred ecccc-ccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence 44433 37999999999997 66677665555555
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=202.29 Aligned_cols=256 Identities=18% Similarity=0.219 Sum_probs=208.0
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
+++|++++.++++.+|+|.=|++.++.......-... ..+....+.+... .+|...|.+++.+++ +++|+
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~e-------v~k~~~~~~k~~r--~~h~keil~~avS~D-gkyla 218 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDE-------VLKSHGNPLKESR--KGHVKEILTLAVSSD-GKYLA 218 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccch-------hhhhccCCCCccc--ccccceeEEEEEcCC-CcEEE
Confidence 4489999999999999999999988765432111100 0000111111111 389999999999999 77999
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|+++++|++.....+..+++|...|..+....
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~- 296 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS- 296 (479)
T ss_pred ecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-
Confidence 99999999999999999999999999999999998766 7799999999999999999998888999999999998776
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
-+..+.+|+.|+++++|++.. .....+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 297 reR~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred ccceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence 455777788999999999954 344566778889999999875 58999999999999999998876655
Q ss_pred ecCCC----------CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 300 SRNPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 300 ~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
....+ ...|++++..|... ++++|+.+|.|++|.+..+-.
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred eccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence 43321 12689999999888 899999999999999998843
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=206.06 Aligned_cols=256 Identities=19% Similarity=0.243 Sum_probs=192.2
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++++.|.|-+|++|+.|..|++||+...+.... ............|.++.|++.+ ..
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------------~fr~l~P~E~h~i~sl~ys~Tg-~~ 228 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------------SFRQLQPCETHQINSLQYSVTG-DQ 228 (641)
T ss_pred EeeecCCCceeeeccccceEEEEecccccccch----------------------hhhccCcccccccceeeecCCC-Ce
Confidence 445689999999999999999999986543221 1122223455679999999995 56
Q ss_pred EEEEEcCCeEEEEECCCCceee------------eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 138 LASASADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
|++.+.....+|+|-...+... ..++|...++|.+|+|.....|++++.||++++||+...+......
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 6677777899999954333222 2257999999999999998999999999999999998765433222
Q ss_pred e------ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEEecCCCCcEEE
Q 018293 206 A------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLA 277 (358)
Q Consensus 206 ~------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~ 277 (358)
. ..-.++.++|++++ ..+++|+.||.|++|+.++... ......-.+|.. .|+||.|+++| ++|+
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v------~p~~~vk~AH~~g~~Itsi~FS~dg-~~Ll 380 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV------RPVMKVKDAHLPGQDITSISFSYDG-NYLL 380 (641)
T ss_pred eeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc------ccceEeeeccCCCCceeEEEecccc-chhh
Confidence 2 23468999999965 4799999999999999876533 123334467766 89999999999 9999
Q ss_pred EEeCCCcEEEEecCCCCceeeEecCC--CCceeEEEEEcCCCCeEEEEEcc------CCeEEEEEccCCCccccccc
Q 018293 278 TGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 278 ~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~ 346 (358)
+-+.|+++++||++..+. ++....+ ..-+-+.++|||+.+ ++++|.. .|.+.+||..+-+.+.+..-
T Consensus 381 SRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 999999999999998653 3333332 234567799999999 6888753 46799999988777665443
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=204.16 Aligned_cols=273 Identities=18% Similarity=0.286 Sum_probs=207.7
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee-ecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
.|-++...|++|+.+. .|.+|+....+ .-.+... ....... ++.|.++++++++++.|+.+++|
T Consensus 182 ~~l~~sdtlatgg~Dr-----~Ik~W~v~~~k---~~~~~tLaGs~g~it-------~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDR-----IIKLWNVLGEK---SELISTLAGSLGNIT-------SIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred EEccCcchhhhcchhh-----hhhhhhcccch---hhhhhhhhccCCCcc-------eeeecCCCceEEeecCCCceeee
Confidence 3456667778887776 66677665432 0001100 0011122 34558999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
+++.. +....+.+|++.|+++.|... ...+++|+.|.+|++||+....+..+
T Consensus 247 nvd~~---------------------------r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 247 NVDSL---------------------------RLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred eccch---------------------------hhhhhhcccccceeeehhhcc-ccceeeccccchhhhhhhhhhheecc
Confidence 99753 444577899999999999887 54599999999999999999888877
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+- ..+.+..+..++ ..+++|-.|++|++||.+...... .....+.|+++..+++ +..+.+++.|.++.+.|+++
T Consensus 299 ~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred cc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccC-CeEEeeecCCCceeeeeccc
Confidence 75 345566677663 568899999999999999988776 4455669999999995 55788889999999999998
Q ss_pred CCCCCCCCCCCccEEEeec----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 241 AKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
. .....+... ....+.+.|+|++ .|+++|+.||.|+||++.+++...+.........|+++.|+|.
T Consensus 373 ~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 373 K---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred c---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 7 333333221 2347899999998 9999999999999999999996555554444446999999999
Q ss_pred CCeEEEEEccCCeEEEEE
Q 018293 317 SPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 317 ~~~~l~~~~~dg~i~vw~ 334 (358)
|.+ |++++.++.+.+|.
T Consensus 443 G~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 443 GSG-LLSADKQKAVTLWT 459 (459)
T ss_pred Cch-hhcccCCcceEecC
Confidence 997 67789999999993
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=204.96 Aligned_cols=244 Identities=20% Similarity=0.272 Sum_probs=199.8
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.|-++...|++|+.|..|++|++.... ......+.+..+.|+.+.|.++ ++.++
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~-~~~~i 235 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSD-NKHVI 235 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCC-CceEE
Confidence 345677899999999999999987433 2344466678899999999999 67888
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
+++.|+.+++|++...+...++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+... .-..+.+..|...+
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt-~l~~S~cnDI~~~~- 312 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKT-VLPGSQCNDIVCSI- 312 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecc-ccccccccceEecc-
Confidence 99999999999999999999999999999999998877 4599999999999999998766552 22344556666543
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
..+++|..|++|++||.+.. .+......+. .|+++..++++ ..|++++.|.++.+.|+++.+....+
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred --eeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEe
Confidence 47889999999999999987 6677777665 89999999998 78888899999999999998754444
Q ss_pred ecCCC--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293 300 SRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 300 ~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 346 (358)
...+. ....+.+.|||++.| +++|+.||.|+||++.+++.....-.
T Consensus 380 sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eccccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEecc
Confidence 33322 234889999999997 88899999999999999887654433
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5e-29 Score=199.62 Aligned_cols=244 Identities=25% Similarity=0.337 Sum_probs=190.7
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
++.|+||+|||+|+.|..|.||+.++.+.+. .+.+|.+.|.+++|-.. ...+
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---------------------------~~~ghr~~V~~L~fr~g-t~~l 259 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---------------------------VFKGHRGAVSSLAFRKG-TSEL 259 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhh---------------------------cccccccceeeeeeecC-ccce
Confidence 3448999999999999999999998755443 46689999999999876 6789
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
++++.|.+|++|+++....+.++.+|.+.|.++.-..-+ +.+-+|+.|+++++|++...... ...++.+.+.|++|-.
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAFIN 337 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEecccccee-eeeCCCCCeeeEEEec
Confidence 999999999999999999999999999999999888777 77777779999999999544433 3667788999999986
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE---eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-- 293 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~-- 293 (358)
...|++|+.+|.|.+|++.+.++.........+... -.+...|++++..|.. .++++|+.+|.|++|-+..+
T Consensus 338 --~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 338 --DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred --ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcc
Confidence 347999999999999999887332111100000000 1122379999999976 89999999999999999887
Q ss_pred CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
....+..+. -.+.|++++|+++|..+++..+....+--|-..
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 222333433 568899999999999877777776666555443
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.3e-28 Score=187.80 Aligned_cols=245 Identities=18% Similarity=0.247 Sum_probs=188.4
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++.|+|.++.|++++.||++++||+...+... .-.|..++.+++|.++ ..
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----------------------------~~~~~~plL~c~F~d~--~~ 67 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----------------------------KFKHGAPLLDCAFADE--ST 67 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhh----------------------------heecCCceeeeeccCC--ce
Confidence 45568889999999999999999998653222 1248999999999986 47
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
+++|+.||.|+.+|+.++... .+..|..+++|+.+++.. ..+++|+.|++|++||.+...... .......|.++...
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVS 144 (323)
T ss_pred EEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEecc
Confidence 999999999999999988654 455699999999999876 789999999999999999744433 33445588888875
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC--c
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P 295 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~ 295 (358)
++.|++|+.+..+.+||+++..... ...-..-.-.+.|+++.|++ .=.++++-||.|.+=.+...+ .
T Consensus 145 ---g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 145 ---GNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred ---CCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHh
Confidence 4589999999999999999874311 11122334568999999977 556778889998875554431 1
Q ss_pred eeeEecCCCC---------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 296 SCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 296 ~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
.....+..|. .+|++|+|+|-.. .||||+.||.|.+||+.+.+.+.++...
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccCC
Confidence 1233344442 3799999999877 5999999999999999998888765443
No 94
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=199.65 Aligned_cols=277 Identities=20% Similarity=0.363 Sum_probs=214.3
Q ss_pred ccCCC-cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 3 INPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 3 ~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
=+|.. ..+++|..++ +|.+|+...-.....+.-|...+..+. + +...+++++.|.+|+.|.
T Consensus 74 khp~~ls~~aSGs~DG-----~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v-----------~~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 74 KHPNKLSTVASGSCDG-----EVKIWNLSQRECIRTFKAHEGLVRGIC--V-----------TQTSFFTVGDDKTVKQWK 135 (433)
T ss_pred cCcchhhhhhccccCc-----eEEEEehhhhhhhheeecccCceeeEE--e-----------cccceEEecCCcceeeee
Confidence 35655 6777887787 888888876544455555544443321 1 226678888899999998
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 161 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 161 (358)
++.. +...+ .....+..|.-+.. ...++|++. .|.|||.+...++..+
T Consensus 136 ~~~~----------------------------p~~ti-lg~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~sm 183 (433)
T KOG0268|consen 136 IDGP----------------------------PLHTI-LGKSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSM 183 (433)
T ss_pred ccCC----------------------------cceee-eccccccccccccc-cccccccCc--eeeecccccCCcccee
Confidence 8631 11111 13345666766665 557888876 4899999888888888
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
.-..+.|.++.|+|....+|+++..|+.|.+||+++..++. .......-+.++|+| ....|+++++|..++.||++..
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCc-cccceeeccccccceehhhhhh
Confidence 87788899999999887888899899999999999988776 444566778899999 6778999999999999999988
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 321 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 321 (358)
..++....+|.+.|.++.|+|.| .-+++|+.|.+|+||..+.+...-+. ...--+.|.++.|+.|.+| +
T Consensus 262 --------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dsky-i 330 (433)
T KOG0268|consen 262 --------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSKY-I 330 (433)
T ss_pred --------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEeccccE-E
Confidence 47788889999999999999999 89999999999999999887632221 1112356999999999997 8
Q ss_pred EEEccCCeEEEEEccCCCccc
Q 018293 322 AIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 322 ~~~~~dg~i~vw~~~~~~~~~ 342 (358)
++|+.|+.|++|.....+.+.
T Consensus 331 ~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EecCCCcceeeeecchhhhcC
Confidence 899999999999987666554
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.2e-28 Score=206.11 Aligned_cols=245 Identities=22% Similarity=0.339 Sum_probs=212.6
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
++|.+...+++|+ .+.|++|+.++.++++.. ..+.+.+..|-|. .++++
T Consensus 380 ~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi-----------------------------~~~y~l~~~Fvpg-d~~Iv 428 (888)
T KOG0306|consen 380 CVSSDSILLASGA-GESIKIWNRDTLKCIRTI-----------------------------TCGYILASKFVPG-DRYIV 428 (888)
T ss_pred EeecCceeeeecC-CCcEEEEEccCcceeEEe-----------------------------ccccEEEEEecCC-CceEE
Confidence 3477777777776 678999999987776643 2247889999998 67999
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-----cc-------ceeee
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-----SG-------FKWAV 207 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~-------~~~~~ 207 (358)
+|...|.+.+||+.+...+.++++|.+.|.+++.+|++ ..+++|+.|.+|++||..-... .. .....
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred EeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 99999999999999999999999999999999999999 8899999999999999753211 01 23345
Q ss_pred cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293 208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 287 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 287 (358)
+..|.|+.++|+ +.+++++--|+++++|-+.+. +...++.+|.-||.|+.++||+ .+++||+.|.+|++
T Consensus 508 ~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKi 576 (888)
T KOG0306|consen 508 EDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKI 576 (888)
T ss_pred cccEEEEEEcCC-CcEEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEE
Confidence 688999999995 559999999999999999987 7778899999999999999998 99999999999999
Q ss_pred EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293 288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
|-+.-+. |...+.+|...|.++.|.|... ++.++|.|+.|+-||-.+-+.+..+.+|...
T Consensus 577 WGLdFGD--CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 577 WGLDFGD--CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred eccccch--hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchhe
Confidence 9999998 7888999999999999999777 6889999999999999998888887777643
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=214.78 Aligned_cols=220 Identities=15% Similarity=0.261 Sum_probs=178.2
Q ss_pred ccccC-CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC---------------------------------------
Q 018293 115 KYKKG-SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--------------------------------------- 154 (358)
Q Consensus 115 ~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--------------------------------------- 154 (358)
...+. .|.+.|+++.|+++ ++|||+|+.|+.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 34445 89999999999999 77999999999999998754
Q ss_pred ---------------------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeee
Q 018293 155 ---------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 213 (358)
Q Consensus 155 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 213 (358)
.++++.+.+|.+.|..+.|+.++ +|++++.|.+|++|++...+++. .+.|...|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-~F~HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-VFSHNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceee-EEecCCeeEE
Confidence 01223456899999999999875 89999999999999999888877 7899999999
Q ss_pred EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
++|+|.+.++|++|+-||.|+||++... +.+ ....-..-|++++|.|+| +..++|+.+|.+++|+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~---------~Vv-~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDK---------KVV-DWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcC---------eeE-eehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCC
Confidence 9999999999999999999999999865 333 333334789999999998 89999999999999999987
Q ss_pred CceeeEecCCC------CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293 294 QPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349 (358)
Q Consensus 294 ~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 349 (358)
+...-..+..| ...|+.+.|.|...-.++..+.|..|+|||.++.+.+..+-+...
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n 545 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN 545 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence 75433333222 237999999985543344568899999999987777665544443
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-28 Score=183.56 Aligned_cols=225 Identities=18% Similarity=0.306 Sum_probs=194.7
Q ss_pred ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
.+++|+.+++.+.++.+ +.+|++++.|.+..+|-..+|+.+.++.+|.+.|.++....+. ..+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence 45689999999999999 6799999999999999988999999999999999999999988 899999999999999999
Q ss_pred cCCCccceeeecCCeeeEEEcCCCCCeEEEEec-----CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293 197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271 (358)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 271 (358)
+++.+. .+....+|..+.|++.+ ++++..++ .+.|.++|++...... ....+...+..+.+.++...|.|.
T Consensus 83 tGk~la-~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~--~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 83 TGKQLA-TWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI--DSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred CCcEEE-EeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh--cccCceEEecCCccceeeeeeccc
Confidence 999877 77888999999999954 45555543 4679999999653211 113567788888899999999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293 272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 272 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
+ .+|++|..||.|.+||+++++. .+.....|...|+.|++++|..+ +++++.|.+-++||+.+-+.++......+-
T Consensus 159 ~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 159 G-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred C-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeecccc
Confidence 8 8999999999999999999863 56666788899999999999995 999999999999999998888776655543
No 98
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=200.35 Aligned_cols=263 Identities=19% Similarity=0.265 Sum_probs=205.9
Q ss_pred cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccC
Q 018293 8 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 87 (358)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~ 87 (358)
..++++...+. .+.+|+.... ...+.....|.+..|+.- +|+|.+|+.|+..|.|++|.+.++..
T Consensus 51 ~yllsaq~~rp----~l~vw~i~k~----~~~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L 115 (476)
T KOG0646|consen 51 EYLLSAQLKRP----LLHVWEILKK----DQVVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL 115 (476)
T ss_pred hheeeecccCc----cccccccCch----hhhhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence 45555655542 4445554432 112244556666666654 78999999999999999999987665
Q ss_pred cCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC---------CCcee
Q 018293 88 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN 158 (358)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~ 158 (358)
+. .+.+|-..|+|+.|+.| +.+|++|+.||.|.+|++. +-++.
T Consensus 116 L~---------------------------v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 116 LN---------------------------VLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred HH---------------------------HHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 44 45679999999999999 6799999999999999874 23677
Q ss_pred eeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293 159 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 237 (358)
..+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+. ....+..+.+++.+| .+..+++|+.+|.|.+.+
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDP-AERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEcc-cccEEEecCCcceEEeee
Confidence 8889999999999987763 3689999999999999999987665 566788999999999 677999999999999998
Q ss_pred cccCCCCC-------CCCCCCccEEEeecCC--ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCcee
Q 018293 238 IRTAKSDP-------DSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 308 (358)
Q Consensus 238 ~~~~~~~~-------~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v 308 (358)
+....... ..........+.+|.+ +|+|++++-|| .+|++|+.||.++|||+.+.+ +++......++|
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV 322 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV 322 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence 87654211 1122344566778877 99999999999 999999999999999999887 565665567889
Q ss_pred EEEEEcCCCC
Q 018293 309 FSVAFSEDSP 318 (358)
Q Consensus 309 ~~~~~~~~~~ 318 (358)
+.+.+.|-.+
T Consensus 323 tnL~i~~~~~ 332 (476)
T KOG0646|consen 323 TNLQINPLER 332 (476)
T ss_pred ceeEeecccc
Confidence 9999966544
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-30 Score=190.87 Aligned_cols=219 Identities=22% Similarity=0.388 Sum_probs=180.2
Q ss_pred EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293 23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK 102 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 102 (358)
.-.+|+.-.+.+...+.|..+.. +++|+.|.++|+||+.+..++|||++..
T Consensus 82 takvw~a~tgdelhsf~hkhivk------------~~af~~ds~~lltgg~ekllrvfdln~p----------------- 132 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVK------------AVAFSQDSNYLLTGGQEKLLRVFDLNRP----------------- 132 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheee------------eEEecccchhhhccchHHHhhhhhccCC-----------------
Confidence 44566666655555554443332 4567999999999999999999999742
Q ss_pred cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE
Q 018293 103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL 182 (358)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (358)
..+...+.+|.+.|..+.|... .+.+++++.|++||+||.++++.++++. ...+|+++..+++| + ++
T Consensus 133 ---------~App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG-~-il 199 (334)
T KOG0278|consen 133 ---------KAPPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDG-R-IL 199 (334)
T ss_pred ---------CCCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCC-C-EE
Confidence 3333456789999999999987 5688888999999999999999999997 57889999999998 5 55
Q ss_pred EEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCC
Q 018293 183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDK 261 (358)
Q Consensus 183 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~ 261 (358)
+-...+.|.+||..+...+. ....+..|.+..++|+. ..+++|++|..++.||..++ ..+..+ .+|.+
T Consensus 200 Tia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tg---------eEi~~~nkgh~g 268 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTG---------EEIGSYNKGHFG 268 (334)
T ss_pred EEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcceEEEEEeccCC---------ceeeecccCCCC
Confidence 66668899999999877765 55677889999999955 69999999999999999998 444454 88999
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 262 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 262 ~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
+|.|+.|+|+| ...++|+.||+|++|.+..++.
T Consensus 269 pVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 269 PVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence 99999999999 8999999999999999877653
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.7e-29 Score=206.39 Aligned_cols=238 Identities=21% Similarity=0.373 Sum_probs=199.9
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCc-eEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
+..+|+|..|++|..++ .+.+||..+.+... +..+| ...+-|++| ++..+.+|+.||.|..
T Consensus 223 v~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h----~~rvg~laW---------~~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSH----ASRVGSLAW---------NSSVLSSGSRDGKILN 284 (484)
T ss_pred EEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCc----CceeEEEec---------cCceEEEecCCCcEEE
Confidence 35789999999999988 89999977654433 33334 344458888 4778999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
+|+...+... ..+.+|...|..++|+++ +.++|+|+.|+.+.|||....+++.
T Consensus 285 ~dvR~~~~~~--------------------------~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 285 HDVRISQHVV--------------------------STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred EEEecchhhh--------------------------hhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccE
Confidence 9997543322 136689999999999999 7799999999999999998888999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEE
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGF 236 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~ 236 (358)
.+..|...|.+++|+|....+||+|+ .|+.|++||..++..+. .....+.|..+.|++....++.+ |..++.|.+|
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 99999999999999998878999875 69999999999887766 55667899999999965544444 5677899999
Q ss_pred EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
+..+. ..+..+.+|...|..++++||| ..+++|+.|.++++|++-...
T Consensus 417 ~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 417 KYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence 99986 7888999999999999999998 899999999999999987653
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=6.7e-28 Score=183.96 Aligned_cols=265 Identities=22% Similarity=0.352 Sum_probs=201.7
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|.|+|..+.|++++.++ .+.+|+.... +..+...| ..+.+++++ . +...+++|+.||.|+.+
T Consensus 19 v~f~~~~~~LLvssWDg-----slrlYdv~~~-~l~~~~~~----~~plL~c~F-------~-d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDG-----SLRLYDVPAN-SLKLKFKH----GAPLLDCAF-------A-DESTIVTGGLDGQVRRY 80 (323)
T ss_pred EEEcCcCCcEEEEeccC-----cEEEEeccch-hhhhheec----CCceeeeec-------c-CCceEEEeccCceEEEE
Confidence 46889999999999997 7777777664 22222233 233346655 2 46689999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|++++... .+..|..+|.||.+++. ...+++|+.|++|++||.+.......
T Consensus 81 Dln~~~~~----------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 81 DLNTGNED----------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGT 131 (323)
T ss_pred EecCCcce----------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccc
Confidence 99875543 23469999999999987 56899999999999999987555555
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
+. ....|.++.... +.|++|+.+..+.+||+++...... .......+.|+++.|+++ =+++++-||.|.+=.+
T Consensus 132 ~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 132 FD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYF 206 (323)
T ss_pred cc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEcc
Confidence 55 345788887764 5699999999999999998765432 234566799999999544 6788889999988666
Q ss_pred ccCCCCCCCCCCCccEEEeecC---------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeE
Q 018293 239 RTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 309 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 309 (358)
...... ....+.+..|. -+|++|+|+|-. ..|+||+.||.|.+||+.+.+ .+..+......|.
T Consensus 207 d~s~~~-----~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 207 DDSEEA-----QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQLAKYETSIS 278 (323)
T ss_pred CCchHH-----hhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhccCCCCceE
Confidence 554211 14455666664 379999999986 899999999999999999887 4555666677899
Q ss_pred EEEEcCCCCeEEEEEcc
Q 018293 310 SVAFSEDSPFVLAIGGS 326 (358)
Q Consensus 310 ~~~~~~~~~~~l~~~~~ 326 (358)
+++|+.+|. +||.++.
T Consensus 279 slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGS-LLAIASS 294 (323)
T ss_pred EEEeccCCC-eEEEEec
Confidence 999999999 5877753
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=199.35 Aligned_cols=295 Identities=17% Similarity=0.225 Sum_probs=207.7
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|.+-|+|-.|++|+-+- .+..|+...- ...+. +.....|.-.-.+. ++.|++.|..|++.+.....+|+
T Consensus 173 l~~Dp~GaR~~sGs~Dy-----~v~~wDf~gM-das~~-~fr~l~P~E~h~i~----sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDY-----TVKFWDFQGM-DASMR-SFRQLQPCETHQIN----SLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eeecCCCceeeeccccc-----eEEEEecccc-cccch-hhhccCcccccccc----eeeecCCCCeEEEEecCcceeEE
Confidence 46789999999998875 5555554331 11111 11111111111111 34458999999888888899999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-ee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NL 159 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~ 159 (358)
|-+..+...... ...-..-...-+||...++|.+|+|.....+++++.||++++||+...+. ++
T Consensus 242 DRdG~~~~e~~K---------------GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 242 DRDGFEIVEFSK---------------GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ccCCceeeeeec---------------cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 987544332110 00111223345689999999999999888999999999999999986543 33
Q ss_pred eec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecC--CeeeEEEcCCCCCeEEEEec
Q 018293 160 TLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDPHAEHSFVVSLE 229 (358)
Q Consensus 160 ~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~--~i~~~~~~~~~~~~~~~~~~ 229 (358)
.++ +..-+++.++|++++ ..+++|+.||.|.+|+........ ....|.. .|+|+.|+++ +++|++-+.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD-GNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc-cchhhhccC
Confidence 332 334578999999999 789999999999999985443221 1234554 8999999995 568999999
Q ss_pred CCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEeC------CCcEEEEecCCCCceeeEec
Q 018293 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDLSNNQPSCIASR 301 (358)
Q Consensus 230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~ 301 (358)
|+++++||++..+ +++....+- ..+-+.++|+|+. .+|++|+. .|.+.+||..+.+ .+..+
T Consensus 385 D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d--~v~ki 453 (641)
T KOG0772|consen 385 DDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLD--TVYKI 453 (641)
T ss_pred CCceeeeeccccc--------cchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEecccee--eEEEe
Confidence 9999999999874 444443332 2345788999998 89999865 4679999998877 45555
Q ss_pred CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.-....|..+.|+|.-+. +..|+.||.+++|--
T Consensus 454 ~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYYD 486 (641)
T ss_pred cCCCceEEEEeecchhhh-eeeecCCCceEEEEC
Confidence 555788999999998775 555788899988643
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-27 Score=172.90 Aligned_cols=251 Identities=22% Similarity=0.338 Sum_probs=193.6
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
+++|+|.|.+.|+|+...+++|-.....-..+.-.. ..+.........-+.|.+.|.|.+|+|+ +.+
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~he------------a~~~pp~v~~kr~khhkgsiyc~~ws~~-gel 103 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHE------------AAKQPPSVLCKRNKHHKGSIYCTAWSPC-GEL 103 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccc------------cccCCCeEEeeeccccCccEEEEEecCc-cCe
Confidence 556799999999999999999987653222111000 0001112222344579999999999999 679
Q ss_pred EEEEEcCCeEEEEECCCCce-----eeeecccccceeeEEEcCC---CCcEEEEEe-CCCcEEEEEcccCCCccceeeec
Q 018293 138 LASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHH---SPQILLSGS-FDRSVVMKDARISTHSGFKWAVA 208 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~ 208 (358)
+++|+.|.+|++.-.+...+ -.++.-|.+.|..++|..+ ++.+|++++ .|..|++-|...++......+|.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987654332 2456779999999999643 335666655 46778888888888887788888
Q ss_pred CCeeeE-EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--c-----CCceeEEEecCCCCcEEEEEe
Q 018293 209 ADVESL-AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--H-----DKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 209 ~~i~~~-~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~-----~~~i~~i~~~~~~~~~l~~~~ 280 (358)
+.|.++ .|+ +-++++|+.|.+|++||++-. .++..+.. | .+.|.+++..|.| ++|++|.
T Consensus 184 ghilalyswn---~~m~~sgsqdktirfwdlrv~---------~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~ 250 (350)
T KOG0641|consen 184 GHILALYSWN---GAMFASGSQDKTIRFWDLRVN---------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGH 250 (350)
T ss_pred ccEEEEEEec---CcEEEccCCCceEEEEeeecc---------ceeeeccCcccCCCcccceeEEEEECCCc-ceeeecc
Confidence 888776 343 458999999999999999976 33433321 1 3679999999998 9999999
Q ss_pred CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.|....+||++.++ .++.+..|...|.++.|+|...| +.+++.|..|++-|+..
T Consensus 251 ~dssc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecccceEEEeeccc
Confidence 99999999999998 68889999999999999999886 77899999999999864
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=9.2e-28 Score=201.55 Aligned_cols=221 Identities=23% Similarity=0.384 Sum_probs=189.2
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
++-++++|+.|+.|.+|.....+ +...+.+|+..|+|++...+ +. +++|+.
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~snVC~ls~~~~-~~-~iSgSW 120 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAE---------------------------PLYTLKGHKSNVCSLSIGED-GT-LISGSW 120 (745)
T ss_pred cCcceEeecccceEEEEecCCCC---------------------------chhhhhccccceeeeecCCc-Cc-eEeccc
Confidence 55679999999999999987543 34467899999999998877 43 899999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCe
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 223 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (358)
|.++++|.. +++...+++|+..|+++...|++ .+++|+.|.+|++|.- ++......+|...|..+++-++. .
T Consensus 121 D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~ 192 (745)
T KOG0301|consen 121 DSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--H 192 (745)
T ss_pred ccceEEecc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--C
Confidence 999999975 56677799999999999999986 7899999999999986 55666677899999999999843 5
Q ss_pred EEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC
Q 018293 224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 303 (358)
Q Consensus 224 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 303 (358)
|++++.||.|+.|++. + ..+..+.+|+..+.++...+++ ..++++++|++++||+.. + +.+.+..
T Consensus 193 flScsNDg~Ir~w~~~-g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e--~~q~I~l 257 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDLD-G---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--E--CVQVITL 257 (745)
T ss_pred eEeecCCceEEEEecc-C---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--c--eEEEEec
Confidence 9999999999999994 3 7888999999999999977766 799999999999999987 3 5666665
Q ss_pred CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
....|+++.+-++|. +++|+.||.|+||.....
T Consensus 258 PttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CccceEEEEEeeCCC--EEEeccCceEEEEEeccc
Confidence 566899999999998 678999999999988743
No 105
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-27 Score=182.06 Aligned_cols=247 Identities=20% Similarity=0.303 Sum_probs=189.8
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-CCCCCcEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNIL 138 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l 138 (358)
.|.+.|+++|+|+.|++|+|||..... ...........|.+.|..+.| +|..++.+
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s-----------------------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDS-----------------------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCC-----------------------CceEEeeeEEecCCcEEEEEecCccccceE
Confidence 348889999999999999999975322 234445566689999999999 56778899
Q ss_pred EEEEcCCeEEEEECCC---------CceeeeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCcc------
Q 018293 139 ASASADKQVKIWDVAA---------GKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG------ 202 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~------ 202 (358)
|+++.|+++.||.-.. .....++......|+.++|.|.. +-.+++++.||.++||+.-......
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 9999999999997521 12344556677899999999853 2578999999999999865432111
Q ss_pred -------ceeeecCCeeeEEEcCC--CCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293 203 -------FKWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268 (358)
Q Consensus 203 -------~~~~~~~~i~~~~~~~~--~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 268 (358)
....+..+..|+.|+|. .+.++++|+.+ +.++||........ ...+..+..|..+|+.++|
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISW 231 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeee
Confidence 11134566889999874 24578888765 57899988765321 2456677899999999999
Q ss_pred cCCCC---cEEEEEeCCCcEEEEecCCC------------------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293 269 NPLVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 269 ~~~~~---~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 327 (358)
.|+-+ .+|++++.|| |+||.+... +...+..+..|.+.|..+.|+-.|. +|++.|.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdD 309 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDD 309 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCC
Confidence 99643 4799999999 999998741 1234556789999999999999999 79999999
Q ss_pred CeEEEEEcc
Q 018293 328 GKLEIWDTL 336 (358)
Q Consensus 328 g~i~vw~~~ 336 (358)
|.|++|...
T Consensus 310 G~VRLWkan 318 (361)
T KOG2445|consen 310 GCVRLWKAN 318 (361)
T ss_pred ceeeehhhh
Confidence 999999864
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2.8e-28 Score=197.66 Aligned_cols=230 Identities=19% Similarity=0.360 Sum_probs=198.6
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
.|||+-|++|++-.++.|||+.... ..+...+..-.-...+++.+|| .++.+++
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapT-------------------------prikaeltssapaCyALa~spD-akvcFsc 527 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-AKVCFSC 527 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCC-------------------------cchhhhcCCcchhhhhhhcCCc-cceeeee
Confidence 7999999999999999999997422 2223344445567889999999 7899999
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 221 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (358)
+.||.|.|||+.+...++.|++|.+.+.|+..+++| ..|-+|+-|++|+.||++.+.... .....+.|.++..+|++
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~- 604 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTG- 604 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCc-
Confidence 999999999999999999999999999999999999 889999999999999999988766 55677889999999965
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 301 (358)
..+++|-+++.+.+..... ...+.+..|.+.|.++.|.+.| +++++.+.|..+..|...-+. .++..
T Consensus 605 dWlavGMens~vevlh~sk----------p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqs 671 (705)
T KOG0639|consen 605 DWLAVGMENSNVEVLHTSK----------PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQS 671 (705)
T ss_pred cceeeecccCcEEEEecCC----------ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeec
Confidence 5899999999998887765 4567788899999999999999 899999999999999998887 34443
Q ss_pred CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
. ...+|.++..+.|.+| +++|+.|....||.+
T Consensus 672 k-E~SsVlsCDIS~ddky-IVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 K-ESSSVLSCDISFDDKY-IVTGSGDKKATVYEV 703 (705)
T ss_pred c-ccCcceeeeeccCceE-EEecCCCcceEEEEE
Confidence 3 3578999999999995 899999998888875
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.7e-29 Score=188.82 Aligned_cols=219 Identities=23% Similarity=0.383 Sum_probs=180.7
Q ss_pred cccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC------------C------ceeeeecccccceeeEEEcCCC
Q 018293 116 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA------------G------KCNLTLEHHTDKVQAVAWNHHS 177 (358)
Q Consensus 116 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~ 177 (358)
..+..|+.++.+.+|+|| +.++|+|+.|..|+|.|++. + -.++++..|.++|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 455679999999999999 67999999999999999871 1 2466777899999999999998
Q ss_pred CcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE
Q 018293 178 PQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255 (358)
Q Consensus 178 ~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 255 (358)
.+|++++.|++|+++|........ .......++.++.|+|. +.++++|+.-..+++||+.+.+.-. ....
T Consensus 185 -~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~Qcfv------sanP 256 (430)
T KOG0640|consen 185 -TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFV------SANP 256 (430)
T ss_pred -heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEee------ecCc
Confidence 999999999999999998654332 23345678999999995 5599999999999999999873211 0112
Q ss_pred EeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-CC-CceeEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333 (358)
Q Consensus 256 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 333 (358)
-..|.+.|+++.+++.+ ++.++++.||.|++||--+++ |+..+. .| ...|.+..|..+|+| +.+.+.|..+++|
T Consensus 257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkLW 332 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKLW 332 (430)
T ss_pred ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeeee
Confidence 24688999999999998 899999999999999988877 454443 34 457999999999997 6678899999999
Q ss_pred EccCCCcccccccc
Q 018293 334 DTLSDAGISNRFSK 347 (358)
Q Consensus 334 ~~~~~~~~~~~~~~ 347 (358)
++.++..+.+..+.
T Consensus 333 Ei~t~R~l~~YtGA 346 (430)
T KOG0640|consen 333 EISTGRMLKEYTGA 346 (430)
T ss_pred eecCCceEEEEecC
Confidence 99999998877665
No 108
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-29 Score=222.00 Aligned_cols=280 Identities=24% Similarity=0.365 Sum_probs=221.3
Q ss_pred ceEEEEEEeccCCCC-CceEeeceeecCCcccceeeecCCccccCCCc----eEEecCCCCeEEEEEcccccCcCceeec
Q 018293 20 SHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN----FMAVGSMEPAIEIWDLDVIDEVQPHVIL 94 (358)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l~~g~~dg~i~vw~~~~~~~~~~~~~~ 94 (358)
..++++-++...+.. ...+..+ .....-.++.|- +.|. ++|.|..||.|.+||.....
T Consensus 39 ~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~-------~~g~~~~GlIaGG~edG~I~ly~p~~~~-------- 101 (1049)
T KOG0307|consen 39 ASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWG-------SYGSHSHGLIAGGLEDGNIVLYDPASII-------- 101 (1049)
T ss_pred cccceeeecccCccccccccccc--cccccceeeeec-------ccCCCccceeeccccCCceEEecchhhc--------
Confidence 466777776655321 1222222 122223367774 3333 58999999999999987420
Q ss_pred CCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee--cccccceeeEE
Q 018293 95 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVA 172 (358)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~ 172 (358)
.......+.....|++.|..+.|++..+++||+|+.||.|.|||+..-+..... ....+.|.+++
T Consensus 102 -------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 102 -------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred -------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 123344555677899999999999998889999999999999999876544444 22467899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec--CCeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCC
Q 018293 173 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDS 247 (358)
Q Consensus 173 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~ 247 (358)
|+..-.++|++++.+|.+.|||++..+.+.....+. ..+..++|+|++...+++++.|. .|.+||+|..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a------ 242 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA------ 242 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc------
Confidence 999887899999999999999999987766444433 34789999999888888887664 6999999987
Q ss_pred CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293 248 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 327 (358)
..++..+.+|...|.++.|++.++++|++++.|+.|.+|+.++++ .+..+......+..+.|+|....++++++-|
T Consensus 243 --ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 243 --SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred --CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--EeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 467788899999999999999888999999999999999999998 5777777778899999999988789999999
Q ss_pred CeEEEEEccCCC
Q 018293 328 GKLEIWDTLSDA 339 (358)
Q Consensus 328 g~i~vw~~~~~~ 339 (358)
|.|.||.+.+..
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999998755
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=201.94 Aligned_cols=313 Identities=19% Similarity=0.272 Sum_probs=220.9
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCC---ceEeeceeecCCcccceeeecCCccccCC----CceEEecCC
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDREK----GNFMAVGSM 73 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g~~ 73 (358)
+.|.|....|.+..++. .+|+|+..+...+ .....|.. -+..++-+||.+.-.+. ..-++|++.
T Consensus 330 ~~Fdet~~klscVYndh-----SlYvWDvrD~~kvgk~~s~lyHS~----ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDH-----SLYVWDVRDVNKVGKCSSMLYHSA----CIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EEecCCCceEEEEEcCc-----eEEEEeccccccccceeeeeeccc----eeeeeccccccccCcccccCCccceeEecC
Confidence 36888999999998887 8999998664221 11222221 12244445544332211 234899999
Q ss_pred CCeEEEEEcccccCcC--ceeecCC------c-ccc-cccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 74 EPAIEIWDLDVIDEVQ--PHVILGG------I-DEE-KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 74 dg~i~vw~~~~~~~~~--~~~~~~~------~-~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
|++|++|+++....-. ...++.. + +.. ............+.....-+-...+.+++.+|+ +++||+|..
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr 479 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDR 479 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecccCc
Confidence 9999999997621111 0001000 0 000 000000011111122223345567999999999 779999999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCC-ccceeeecCC----------
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH-SGFKWAVAAD---------- 210 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~---------- 210 (358)
-|+++||++..-+....+..|+..|.|+.|+.. +..+|++++.|..|.+||+..+-. ......|...
T Consensus 480 ~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence 999999999999888999999999999999853 336899999999999999864322 1222223333
Q ss_pred ---------------------------------------eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293 211 ---------------------------------------VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 251 (358)
Q Consensus 211 ---------------------------------------i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (358)
+..++..|. ..++++++.|..|+|||+.++ +
T Consensus 560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sg---------K 629 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESG---------K 629 (1080)
T ss_pred CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC-cceEEEEecccceEEEecccc---------c
Confidence 445555563 458899999999999999998 4
Q ss_pred ccEEE---eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293 252 SSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328 (358)
Q Consensus 252 ~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 328 (358)
....+ ..|.+....+...|.| .|+++.+.|+++.++|..+++ ++....+|...|+.+.|.+|-++ |++.+.||
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvsgDg 705 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVSGDG 705 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeecCCc
Confidence 44454 3566778889999998 999999999999999999998 78889999999999999999996 88899999
Q ss_pred eEEEEEccC
Q 018293 329 KLEIWDTLS 337 (358)
Q Consensus 329 ~i~vw~~~~ 337 (358)
.|.||.+..
T Consensus 706 CIFvW~lp~ 714 (1080)
T KOG1408|consen 706 CIFVWKLPL 714 (1080)
T ss_pred eEEEEECch
Confidence 999999864
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=2.3e-26 Score=191.85 Aligned_cols=279 Identities=13% Similarity=0.104 Sum_probs=187.0
Q ss_pred CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEEEcccc
Q 018293 7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~ 85 (358)
+++++++..++ .+++|+...++....+..+ ..+.++ .|+|+++.+ ++++.++.|++||..++
T Consensus 1 ~~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l-------~~~~dg~~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 1 EKAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGI-------TLSKDGKLLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred CcEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCce-------EECCCCCEEEEEECCCCeEEEEECCCC
Confidence 35667776665 8888887654322222221 112234 448999876 67778999999998764
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 165 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 165 (358)
+... .+..+. .+..++|+|++..++++++.|+.+++||+++++.+..+.. .
T Consensus 64 ~~~~---------------------------~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~ 114 (300)
T TIGR03866 64 EVIG---------------------------TLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-G 114 (300)
T ss_pred cEEE---------------------------eccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-C
Confidence 4321 111222 2467889999554445566789999999998887777753 3
Q ss_pred cceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293 166 DKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 244 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 244 (358)
..+.+++|+|++ .+++++..++ .+.+||.++.+.... ......+..++|+|++..+++++..++.|++||+++.
T Consensus 115 ~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~--- 189 (300)
T TIGR03866 115 VEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN-VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR--- 189 (300)
T ss_pred CCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE-EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---
Confidence 446889999999 7777777665 467789876654332 2233456789999976544455567999999999876
Q ss_pred CCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 245 PDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
+....+..+ ......++|+|++...+++.+.++.+.+||+++++.. ... .+...+.+++|+|+|
T Consensus 190 ------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~-~~~~~~~~~~~~~~g 260 (300)
T TIGR03866 190 ------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYL-LVGQRVWQLAFTPDE 260 (300)
T ss_pred ------eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEE-EeCCCcceEEECCCC
Confidence 333332211 1123568899998433455556778999999887642 222 233468899999999
Q ss_pred CeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 318 PFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 318 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
++++++++.+|.|.+||+.+++.+.+.-
T Consensus 261 ~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 261 KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9644445679999999999988776653
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=172.42 Aligned_cols=265 Identities=15% Similarity=0.233 Sum_probs=207.8
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCC---CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 77 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 77 (358)
++++-+|..++.+..+. .+.+|+.... .+...+.|+... -.+.|- .+..++|++++.|..|
T Consensus 26 v~wn~~g~~lasgs~dk-----tv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~------~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDK-----TVSVWNLERDRFRKELVYRGHTDSV-----DQLCWD------PKHPDLFATASGDKTI 89 (313)
T ss_pred EEEcccCceeeecccCC-----ceEEEEecchhhhhhhcccCCCcch-----hhheeC------CCCCcceEEecCCceE
Confidence 35677899999997776 6666665543 112223333222 244553 2457789999999999
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 157 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 157 (358)
++||+..+.+..... .+..=.-+.|+|+ +.+++.+..|..|...|.++.+.
T Consensus 90 r~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIE----------------------------TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred EEEEeccCcEEEEee----------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccce
Confidence 999997655443221 2233345789999 66999999999999999998887
Q ss_pred eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293 158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237 (358)
Q Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 237 (358)
....+ ....+..+.|+.++ .+++.....|.|.|...-..+++.....|.....|+.|+|+ +++|++|+.|-.+-+||
T Consensus 141 ~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 141 VNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWD 217 (313)
T ss_pred eehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC-CceEeeccccceeeccC
Confidence 76665 45667889999766 67777777899999998888888878889999999999995 56999999999999999
Q ss_pred cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
+... .++..+..+.-+|..+.|+.+| ++|++|++|..|-|=+++++. .+.++ .+.++...++|+|..
T Consensus 218 ~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI-~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 218 VDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEI-PCEGPTFTVAWHPKR 284 (313)
T ss_pred hhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEe-eccCCceeEEecCCC
Confidence 9987 8888999999999999999998 999999999999999999998 45444 367889999999998
Q ss_pred CeEEEEEccC
Q 018293 318 PFVLAIGGSK 327 (358)
Q Consensus 318 ~~~l~~~~~d 327 (358)
. +||-++.|
T Consensus 285 ~-LLAyA~dd 293 (313)
T KOG1407|consen 285 P-LLAYACDD 293 (313)
T ss_pred c-eeeEEecC
Confidence 8 67666554
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.1e-27 Score=210.80 Aligned_cols=253 Identities=21% Similarity=0.297 Sum_probs=202.6
Q ss_pred cccCCCceEEecC--CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 60 KDREKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 60 ~~s~~~~~l~~g~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
..+|||..+|||+ .||.++||+.+....... .......+.......|.+.|+|+.|+|+ +.+
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~---------------~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~ 83 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE---------------EKNENLPKHLCTMDDHDGSVNCVRFSPD-GSY 83 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhh---------------hhhcccchhheeeccccCceeEEEECCC-CCe
Confidence 3489999999999 999999999864221100 0000124555667789999999999999 779
Q ss_pred EEEEEcCCeEEEEECCC------------------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 138 LASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
||+|+.|+.|.||.... .++...+.+|...|..++|+|++ .++++++.|++|.+||.++.+
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccce
Confidence 99999999999998762 13567788999999999999998 999999999999999999998
Q ss_pred CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec------CCceeEEEecCCCC
Q 018293 200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVP 273 (358)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~ 273 (358)
.......|.+.|..+.|+|- +++|++-+.|++|++|++.+. ...+.+..+ ...+..+.|+|||
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG- 231 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG- 231 (942)
T ss_pred eeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-
Confidence 88888899999999999995 569999999999999997664 333333322 3457899999999
Q ss_pred cEEEEEeC----CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC--------C-------Ce-EEEEEccCCeEEEE
Q 018293 274 NLLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--------S-------PF-VLAIGGSKGKLEIW 333 (358)
Q Consensus 274 ~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~-~l~~~~~dg~i~vw 333 (358)
.+|++... -.++.|.+..+.+ .-..+.+|.+++.+++|+|. | .| ++|+|+.|++|-||
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred CeecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 78887533 2358888886665 56778899999999999981 1 12 78999999999999
Q ss_pred EccCCCccc
Q 018293 334 DTLSDAGIS 342 (358)
Q Consensus 334 ~~~~~~~~~ 342 (358)
.....+++.
T Consensus 310 ~T~~~RPl~ 318 (942)
T KOG0973|consen 310 NTALPRPLF 318 (942)
T ss_pred ecCCCCchh
Confidence 987766554
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=186.88 Aligned_cols=251 Identities=21% Similarity=0.347 Sum_probs=195.4
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
+..+.|+-+..|.|+||++...-......- ...+....+++..+.+|...=++|+|||-..-.|++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~-----------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPG-----------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCcc-----------ccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 556778888899999999864211110000 011225677888899999999999999964446889988
Q ss_pred CCeEEEEECCCCce---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcC
Q 018293 144 DKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDP 218 (358)
Q Consensus 144 dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~ 218 (358)
-+.|++|...++.- ..-+.+|+..|..++|+|.....|++|+-||+|+|||+|.+.... ....|.+.|+.+.|+.
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR 312 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence 89999999988753 234567999999999999988999999999999999999884332 2356889999999998
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC----
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---- 294 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~---- 294 (358)
..+ +|++|+.||+++|||+|.-+. .+++..+.-|..+|+++.|+|.....|++++.|.+|.+||+....
T Consensus 313 ~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 313 REP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred Ccc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 555 999999999999999998754 478899999999999999999877899999999999999985422
Q ss_pred -------------ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293 295 -------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 295 -------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~ 334 (358)
+..++... -...+..+.|++.-+-++++-+.|| +.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11222222 2345778999998776788888887 45554
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=181.45 Aligned_cols=303 Identities=19% Similarity=0.246 Sum_probs=222.4
Q ss_pred CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccccc
Q 018293 7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID 86 (358)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~ 86 (358)
.+++.++..+- ...+|..+.+.-...|..|...++ | ++|++.+.++++++.|++-.||...-.=
T Consensus 160 qpi~gtASADh-----TA~iWs~Esg~CL~~Y~GH~GSVN----s-------ikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 160 QPICGTASADH-----TARIWSLESGACLATYTGHTGSVN----S-------IKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred Ccceeeccccc-----ceeEEeeccccceeeeccccccee----e-------EEeccccceEEEccCCcchHHHHHhhcC
Confidence 44444444433 455666665544455666644443 3 4558999999999999999999843211
Q ss_pred CcCceeecCCcccc------cc-------cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293 87 EVQPHVILGGIDEE------KK-------KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 153 (358)
Q Consensus 87 ~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 153 (358)
.........+.+.+ .+ ........-..+...+.+|...|.+..|-.. ++.+++++.|.+..+||++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVE 302 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeec
Confidence 11110000000000 00 0011122345567788999999999999987 6789999999999999999
Q ss_pred CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC-CccceeeecCCeeeEEEcCCCCCeEEEEecCCe
Q 018293 154 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 232 (358)
Q Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 232 (358)
+++++..+.+|....+.++-+|.. +++++++.|.+.++||++..- ....+.+|...|+++.|..+ ..+++|+.|.+
T Consensus 303 tge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrT 379 (481)
T KOG0300|consen 303 TGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRT 379 (481)
T ss_pred cCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC--CceeecCCCce
Confidence 999999999999999999999998 899999999999999998432 33456789999999999984 36999999999
Q ss_pred EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce--eeEecCCCCceeEE
Q 018293 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAGAVFS 310 (358)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~ 310 (358)
|++||+++.. .++..+. ..++++.++.+..+ ..++.-..+..|++||+...+.. +.....+|..-|.|
T Consensus 380 vKvWdLrNMR--------splATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 380 VKVWDLRNMR--------SPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred EEEeeecccc--------Ccceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 9999999873 4555554 46789999999855 68888888899999999876532 22345688889999
Q ss_pred EEEcCCCC-eEEEEEccCCeEEEEEccCCC
Q 018293 311 VAFSEDSP-FVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 311 ~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~ 339 (358)
++|..+.. .-|.+++-|..+.=|++....
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeccccCcccccccccccceeeeeEecccC
Confidence 99976532 016788999999999987543
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1e-27 Score=182.05 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=185.6
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc------------ee---eeecccccceeeEEEcCCCCcEEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CN---LTLEHHTDKVQAVAWNHHSPQILLSG 184 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (358)
.|.+.|+++...+..++++++|+.||.|.+||++... ++ ..-.+|...|.++.|-|-+..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999999889999999999999999997542 11 11136788999999999776899999
Q ss_pred eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC--CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293 185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 262 (358)
Q Consensus 185 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (358)
+.|.++++||..+.+... .+..++.|.+-+|+|-. ..++++|..+-.|++.|+.++ ...+.+.+|...
T Consensus 121 SFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~~ 190 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRDG 190 (397)
T ss_pred cccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccCc
Confidence 999999999999877655 56777888888888842 357888999999999999998 788999999999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEecCCC-------------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293 263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNN-------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 329 (358)
Q Consensus 263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 329 (358)
|.++.|+|..+..|++|+.||.|++||++.. ++..+.....|.+.++.++|..++.+ +++++.|..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDR 269 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccc
Confidence 9999999988788999999999999999753 12223335568889999999999997 888899999
Q ss_pred EEEEEccCCCccccccccCcCCC
Q 018293 330 LEIWDTLSDAGISNRFSKYSKPK 352 (358)
Q Consensus 330 i~vw~~~~~~~~~~~~~~~~~~~ 352 (358)
+++|+..+|+...+.+++....+
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~ 292 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQ 292 (397)
T ss_pred eEEeecccCcccccccccccccc
Confidence 99999999998777776654433
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=185.82 Aligned_cols=241 Identities=17% Similarity=0.247 Sum_probs=194.4
Q ss_pred CCceEEecCC-CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 64 KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 64 ~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
.+.+++++.. ...|.+|.+...+...... --.++|.|++-+|. +.+|+.|+
T Consensus 49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~---------------------------v~Pg~v~al~s~n~-G~~l~ag~ 100 (476)
T KOG0646|consen 49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYI---------------------------VLPGPVHALASSNL-GYFLLAGT 100 (476)
T ss_pred chhheeeecccCccccccccCchhhhhhhc---------------------------ccccceeeeecCCC-ceEEEeec
Confidence 3467766654 4589999987544433222 23478999999999 77888888
Q ss_pred cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC---------CCccceeeecCCeee
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---------THSGFKWAVAADVES 213 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i~~ 213 (358)
..|.+.+|.+.+|.++..+.+|-..|+++.|+.|+ .+|++|+.||.|.+|++..- ........|.-+|+.
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITD 179 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITD 179 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEE
Confidence 99999999999999999999999999999999999 89999999999999987531 233344567788999
Q ss_pred EEEcCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 214 LAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 214 ~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
+...+. -..++++.+.|.++++||+..+ ..+..+. ....+.+++..|-+ ..+++|+.+|.|.+.++..
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccc---------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhc
Confidence 888763 2458999999999999999987 4454443 46789999999977 8999999999999988754
Q ss_pred CC--------------ceeeEecCCCCc--eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 293 NQ--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 293 ~~--------------~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
.. ......+.+|.+ .|+|++.+-||. +|++|+.||.++|||+.+.+++++..
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 32 123445667877 999999999999 79999999999999999988887655
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=182.94 Aligned_cols=235 Identities=23% Similarity=0.350 Sum_probs=199.0
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
.....+.+++.|.+.+||.++++.++. .+.||.+.|++|+|++. +.++++++
T Consensus 158 ~tqpi~gtASADhTA~iWs~Esg~CL~---------------------------~Y~GH~GSVNsikfh~s-~~L~lTaS 209 (481)
T KOG0300|consen 158 STQPICGTASADHTARIWSLESGACLA---------------------------TYTGHTGSVNSIKFHNS-GLLLLTAS 209 (481)
T ss_pred cCCcceeecccccceeEEeecccccee---------------------------eecccccceeeEEeccc-cceEEEcc
Confidence 344588899999999999998877655 56689999999999999 77999999
Q ss_pred cCCeEEEEECC------------------------------------C----CceeeeecccccceeeEEEcCCCCcEEE
Q 018293 143 ADKQVKIWDVA------------------------------------A----GKCNLTLEHHTDKVQAVAWNHHSPQILL 182 (358)
Q Consensus 143 ~dg~v~iwd~~------------------------------------~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (358)
.|++.+||... . ..++..+.+|...|.+..|...+ +.++
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~v 288 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMV 288 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceee
Confidence 99999999621 0 02345677899999999999888 8899
Q ss_pred EEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293 183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 262 (358)
Q Consensus 183 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (358)
+++.|.+..+||+++++.+..+.+|....+.++-+| ...++++++.|.+.++||++.. ...+..+.+|...
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdt 359 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDT 359 (481)
T ss_pred eeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh--------cceeeeecccccc
Confidence 999999999999999999998999999999999999 5668999999999999999965 4677889999999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
|+++.|..+. .+++|+.|.+|++||+++.+. .+..+. -..+++.++.+..++ +++.--.+..|++||+.....
T Consensus 360 VTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 360 VTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred eeEEEEecCC--ceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCcc
Confidence 9999999864 789999999999999998763 233332 356789999998887 688778888999999966543
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.1e-27 Score=195.81 Aligned_cols=276 Identities=18% Similarity=0.296 Sum_probs=213.3
Q ss_pred CCCcEEEEEEecCCCceEEEEEEeccCCCC----C--ceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 5 PNDAVIVCARNEDDVSHLEVYILEESDGGD----P--NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
|+++.|++|+.++ .+..|+...... + ....+|..-+..+++ -.+++-|++++.|-+|+
T Consensus 35 ~~~ryLfTgGRDg-----~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL-----------~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 35 PNGRYLFTGGRDG-----IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL-----------CGNGKTLISASSDTTVK 98 (735)
T ss_pred CCCceEEecCCCc-----eEEEeccccccCCcccchhhhhhhhHhHHhhHHh-----------hcCCCceEEecCCceEE
Confidence 5677799998886 666666544321 1 111233222222222 35788999999999999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-CCCCCcEEEEEEcCCeEEEEECCCC--
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAG-- 155 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~-- 155 (358)
+|+..... ......+..|.+.|.|++. .++ ..++|+|+.|+.|.+||++++
T Consensus 99 ~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 99 VWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred EeecccCc-------------------------chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcch
Confidence 99987432 1233355679999999999 566 779999999999999999977
Q ss_pred ceeeee--------c-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE
Q 018293 156 KCNLTL--------E-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 226 (358)
Q Consensus 156 ~~~~~~--------~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (358)
+.+..+ . ++..+|++++.++.+ ..+++|+..+.+++||.++.+.+..+.+|..-|.++..+++ +..+++
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD-Gt~~ls 230 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD-GTRLLS 230 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC-CCeEee
Confidence 223222 2 678899999999999 89999999999999999999998888899999999999995 568999
Q ss_pred EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc
Q 018293 227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 306 (358)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 306 (358)
++.||+|++||+... +++.++..|...+.++..+|+- ..+++|+.||.|..=|+++...... +-....
T Consensus 231 ~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tl--ick~da 298 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTL--ICKEDA 298 (735)
T ss_pred cCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheE--eecCCC
Confidence 999999999999987 8899999999999999999987 8999999999999999998542122 122345
Q ss_pred eeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 307 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 307 ~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
+|..+..+...+. +-+++.|+.|+-|...-
T Consensus 299 Pv~~l~~~~~~~~-~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 299 PVLKLHLHEHDNS-VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred chhhhhhccccCC-ceeeeccccceecCCcc
Confidence 6777777754443 34567888898887653
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=2.7e-25 Score=180.43 Aligned_cols=273 Identities=20% Similarity=0.318 Sum_probs=206.4
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
.|+|.++.+++.+..+ .++.|....+........-+..-....+|+.+ .++|+ ++||..+|.|.||+
T Consensus 207 ~FHPtd~nliit~Gk~-----H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F-------~engd-viTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKG-----HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF-------LENGD-VITGDSGGNILIWS 273 (626)
T ss_pred EeccCCCcEEEEeCCc-----eEEEEEccCCceEEEeeccccccceEEEEEEE-------cCCCC-EEeecCCceEEEEe
Confidence 5899988888887766 78888776652211111111111245556655 67775 88999999999999
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee---
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN--- 158 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--- 158 (358)
..+....+ ....|.+.|.+++...+ + .|++|+.|..|..||-. -+.+
T Consensus 274 ~~~~~~~k---------------------------~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd~~-y~k~r~~ 323 (626)
T KOG2106|consen 274 KGTNRISK---------------------------QVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWDDN-YRKLRET 323 (626)
T ss_pred CCCceEEe---------------------------EeeecCCceEEEEEecC-c-cEeecCccceEEecccc-ccccccc
Confidence 85432222 12269999999999998 5 46679999999999832 1110
Q ss_pred --------------------------------------eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 159 --------------------------------------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 159 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
....+|.+....++.+|+. ..+++++.|+.+++|+ ...
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~---~~k 399 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN---DHK 399 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc---CCc
Confidence 0223577888899999998 7899999999999999 333
Q ss_pred ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293 201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 280 (358)
.........++.|+.|+|.+ .+++|+..|...+.|.++. . ...+.....++++++|+|+| .+||.|+
T Consensus 400 ~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~---------~-lv~~~~d~~~ls~v~ysp~G-~~lAvgs 466 (626)
T KOG2106|consen 400 LEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ---------D-LVTIHTDNEQLSVVRYSPDG-AFLAVGS 466 (626)
T ss_pred eeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc---------e-eEEEEecCCceEEEEEcCCC-CEEEEec
Confidence 44455678899999999965 8999999999999999874 3 33444448899999999999 9999999
Q ss_pred CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.|+.|++|.+..+.......-..+.++|+.+.|++|++| +.+-+.|-.|..|..
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKP 520 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEcc
Confidence 999999999987665444444445589999999999996 888999999999943
No 120
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=179.64 Aligned_cols=222 Identities=24% Similarity=0.384 Sum_probs=181.5
Q ss_pred ceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECC----------------CCceeeeecccccceeeEE
Q 018293 110 KKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVA----------------AGKCNLTLEHHTDKVQAVA 172 (358)
Q Consensus 110 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~~~ 172 (358)
+.........+|.+.++.+..++-+ ..+.++-+..|.|.||++. ..+++.++.+|...=+.++
T Consensus 139 ~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 139 RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 3455555666788888888877763 3466667888999999985 2356778889999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcccCCC---ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCC
Q 018293 173 WNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 249 (358)
Q Consensus 173 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (358)
|+|-....+++|.--+.|++|...++.- ...+..|...|..++|+|.....|++|+.||+|+|||+|.+..
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------ 292 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------ 292 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------
Confidence 9995545688888889999999887642 1234568999999999999999999999999999999998843
Q ss_pred CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293 250 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328 (358)
Q Consensus 250 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 328 (358)
+.......|.+.|+.|.|+... .+|++|+.||+++|||++.-+. ..+..+..|..+|+++.|+|.....+++++.|.
T Consensus 293 -~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 293 -KAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred -cceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 3444458999999999999987 5999999999999999987542 256678889999999999997776899999999
Q ss_pred eEEEEEccCCC
Q 018293 329 KLEIWDTLSDA 339 (358)
Q Consensus 329 ~i~vw~~~~~~ 339 (358)
.|.+||+.-..
T Consensus 371 QitiWDlsvE~ 381 (440)
T KOG0302|consen 371 QITIWDLSVEA 381 (440)
T ss_pred cEEEEEeeccC
Confidence 99999997543
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.4e-26 Score=175.84 Aligned_cols=216 Identities=20% Similarity=0.332 Sum_probs=171.4
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceec--cccccCCCcccEEEEecCCCCCcEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS--IKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
-.|+|+++|+.||.|.|||++.....+...+.. +... .+....+|+-.|..+.|-|-+.-++.+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhcccee--------------heeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 368999999999999999997544222111110 0111 222345799999999999987779999
Q ss_pred EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
++.|.++++||..+.+....|+ .++.|.+-+++|-.. .++++|..|-.|++.|+..+.....+.+|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988887777 567888888888431 4678888899999999999999988999999999999999
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCC------CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDP------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
..+..+++|+.||.|++||++...... .....+.+..-..|.+.+++++|..++ .++++++.|..+++|+..+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMES 277 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeeccc
Confidence 999999999999999999999763210 111112233456788999999999998 8999999999999999987
Q ss_pred CC
Q 018293 293 NQ 294 (358)
Q Consensus 293 ~~ 294 (358)
++
T Consensus 278 G~ 279 (397)
T KOG4283|consen 278 GR 279 (397)
T ss_pred Cc
Confidence 65
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.2e-27 Score=184.03 Aligned_cols=232 Identities=16% Similarity=0.210 Sum_probs=189.0
Q ss_pred cCCC-ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 62 REKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 62 s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
+|.. ..+++|+.||.|+|||+...+ ....+..|.+.|..|++.. ..+++
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------~~~~f~AH~G~V~Gi~v~~---~~~~t 124 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRE---------------------------CIRTFKAHEGLVRGICVTQ---TSFFT 124 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhh---------------------------hhheeecccCceeeEEecc---cceEE
Confidence 5554 679999999999999997533 3446678999999999986 36889
Q ss_pred EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293 141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 220 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (358)
++.|.+|+.|.++. .++.++.+ ...+..+.-+..+ ..++++++ .|.|||.+...++....-....+.++.|+|..
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence 99999999999765 46666653 4556777776666 67888765 58999998888877665566789999999988
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 300 (358)
..+|+++..|+.|.+||++.. .++..+... ..-+.|+|+|.. ..+++|++|..++.||++..+. ++..
T Consensus 200 TsILas~~sDrsIvLyD~R~~---------~Pl~KVi~~-mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~-p~~v 267 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQA---------SPLKKVILT-MRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR-PLNV 267 (433)
T ss_pred chheeeeccCCceEEEecccC---------Cccceeeee-ccccceecCccc-cceeeccccccceehhhhhhcc-cchh
Confidence 888999999999999999998 445444332 334789999965 7888999999999999998763 5677
Q ss_pred cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
..+|.+.|.++.|+|.|+. +++|+.|.+|+||....+..-
T Consensus 268 ~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred hcccceeEEEeccCCCcch-hccccccceEEEeecCCCcch
Confidence 8899999999999999996 999999999999999876643
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.8e-28 Score=204.76 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=195.4
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
..++.+++|+.|-.+-+|.+..... ...+.+|..+|.++.|++. ..+|++|+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~---------------------------i~S~~~hespIeSl~f~~~-E~Llaags 89 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNA---------------------------ITSLTGHESPIESLTFDTS-ERLLAAGS 89 (825)
T ss_pred ccceeeccCCCceeeccccccCCch---------------------------hheeeccCCcceeeecCcc-hhhhcccc
Confidence 3578899999999999999864322 2246789999999999999 77999999
Q ss_pred cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 222 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (358)
.+|+|++||++..+.++++.+|...+.++.|+|-+ .+++.++.|+.+++||++...+......|...+..+.|+|+ +.
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~-Gr 167 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD-GR 167 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCC-Cc
Confidence 99999999999999999999999999999999999 88899999999999999988888777778888999999995 56
Q ss_pred eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293 223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 302 (358)
Q Consensus 223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 302 (358)
+++.|++|..+++||+..+ +....+..|...+.++.|+|.. .++++|+.|+++++||+++-+ .+....
T Consensus 168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~ 235 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK 235 (825)
T ss_pred eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence 9999999999999999987 7788899999999999999987 889999999999999999776 455555
Q ss_pred CCCceeEEEEEcCCCCeEEEEEccC
Q 018293 303 PKAGAVFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~l~~~~~d 327 (358)
.....|.+.+|+|++. .+++|..+
T Consensus 236 ~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCce-eeecCchh
Confidence 5677899999999998 57766554
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=175.46 Aligned_cols=249 Identities=17% Similarity=0.269 Sum_probs=190.5
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.||+.|.+||+|..||.|.|||+.+.. .-..+.+|..+|++++||++ +++|+
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------------------------iar~lsaH~~pi~sl~WS~d-gr~Ll 81 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFR---------------------------IARMLSAHVRPITSLCWSRD-GRKLL 81 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccc---------------------------hhhhhhccccceeEEEecCC-CCEee
Confidence 458999999999999999999998644 33366789999999999999 66999
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----ecCCeeeEE
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLA 215 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~ 215 (358)
+++.|..|.+||+..|.+++.++ ..++|+.+.|+|...+.+++.-.+..-.+-++..+........ ......+..
T Consensus 82 tsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred eecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 99999999999999999999998 6789999999998767777766666666666665332221111 112233445
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEEEEEeCCCcEEEEecCCC-
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN- 293 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~- 293 (358)
|++ .++++++|+..|.+.+||..+. +++..+.... ..|..+.++..| ..|+.-+.|..|+.|+++.-
T Consensus 161 fdr-~g~yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 161 FDR-RGKYIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccC-CCCEEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhc
Confidence 777 5669999999999999999987 6666665554 778999999988 89999999999999998731
Q ss_pred ------CceeeEecCC--CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293 294 ------QPSCIASRNP--KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 294 ------~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
++.....++. ....-.+++|+.+|.|++++...-..++||.-..|..++-+.+..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 2111111111 223455789999999877766667789999999998887555544
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=194.44 Aligned_cols=244 Identities=16% Similarity=0.232 Sum_probs=195.0
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.|.|+|+++++++.||.|++|+........+ .+..+...|.+++.... +|+
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~--------------------------ti~~~g~~v~~ia~~s~---~f~ 70 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPE--------------------------TIDISGELVSSIACYSN---HFL 70 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCc--------------------------hhhccCceeEEEeeccc---ceE
Confidence 3489999999999999999999875421111 11126778888887644 899
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
+|+.+++|.+|.+..++.-..+....-++++++++-+| .+++.|+.|-.|++.++.+........+|.++|.++.|+|.
T Consensus 71 ~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 71 TGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred EeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence 99999999999998887665666667889999999999 89999999999999999999888889999999999999995
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
++++++.+.||.|++||+.++..........+...+. ....+..++|+|++ ..++....|+.|++|+..+.......
T Consensus 150 -~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 150 -GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred -CCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheee
Confidence 5699999999999999999874322211111111111 14567889999998 45666667999999999998865555
Q ss_pred ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
....+...+..++|+|+|.| ||+++.||.|.|||..+
T Consensus 227 r~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 55556666999999999997 89999999999999986
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=7e-26 Score=181.63 Aligned_cols=267 Identities=17% Similarity=0.240 Sum_probs=202.8
Q ss_pred CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293 46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 125 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 125 (358)
+..+++++|.|+ .+-+++|+|..-|.|-+||+.+.+.... -...+..|..+|
T Consensus 186 ~~Rit~l~fHPt-----~~~~lva~GdK~G~VG~Wn~~~~~~d~d-----------------------~v~~f~~hs~~V 237 (498)
T KOG4328|consen 186 DRRITSLAFHPT-----ENRKLVAVGDKGGQVGLWNFGTQEKDKD-----------------------GVYLFTPHSGPV 237 (498)
T ss_pred ccceEEEEeccc-----CcceEEEEccCCCcEEEEecCCCCCccC-----------------------ceEEeccCCccc
Confidence 444567777553 3447899999999999999974333222 233455799999
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-cc
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG 202 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~ 202 (358)
.+|.|+|.+...+++.+.||+|++-|++.... +.........+.++.|+.+. ..++.+..=|.+.+||+++... ..
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccch
Confidence 99999999888999999999999999987743 33333345567788888887 6677777777999999998876 34
Q ss_pred ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293 203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 282 (358)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 282 (358)
....|...|..++++|-...++++++.|++++|||+|...... .+......|...|.+..|+|.++. |+|.+.|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D 390 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQD 390 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccC
Confidence 4556777999999999999999999999999999999875432 235566789999999999999955 8999999
Q ss_pred CcEEEEecC----CCCceeeEecCCCC---ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293 283 KMVKLWDLS----NNQPSCIASRNPKA---GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 283 g~i~i~d~~----~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
..|+|||.. ...+.......... -......|.|+.. ++++|-.-..|-|+|-..++.+.++....
T Consensus 391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred CceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 999999983 33332332222111 1244578999988 68889888899999998888666655444
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.9e-25 Score=188.68 Aligned_cols=303 Identities=16% Similarity=0.203 Sum_probs=220.0
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeece--------------ee---cCCcccceeeecCCccccCC
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHH--------------II---IPAFPLCMAWLDCPLKDREK 64 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~---~~~~~~~~~~~~~~~~~s~~ 64 (358)
|.-+.++|++|+.++ .+.+|+..+- ..-.+...|- .. ...+|-|+ +..|++.
T Consensus 266 IcVs~r~I~cgCa~g-----~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~I-----A~~Fdet 335 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKG-----MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAI-----ACQFDET 335 (1080)
T ss_pred eeeecceEEEeeccc-----eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCcee-----EEEecCC
Confidence 455789999999997 6777765431 0011111110 00 11123344 3357899
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC----------
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF---------- 134 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------- 134 (358)
.+.|.+.-.|..++|||+.....+ .....+-.|...|+.+.--|-+
T Consensus 336 ~~klscVYndhSlYvWDvrD~~kv------------------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp 391 (1080)
T KOG1408|consen 336 TDKLSCVYNDHSLYVWDVRDVNKV------------------------GKCSSMLYHSACIWDVENLPCNVHSPTAACLP 391 (1080)
T ss_pred CceEEEEEcCceEEEEeccccccc------------------------cceeeeeeccceeeeeccccccccCcccccCC
Confidence 999999999999999999754332 2233344588888888765521
Q ss_pred CcEEEEEEcCCeEEEEECCCCceeeee-------------------------------------cccccceeeEEEcCCC
Q 018293 135 RNILASASADKQVKIWDVAAGKCNLTL-------------------------------------EHHTDKVQAVAWNHHS 177 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~~ 177 (358)
...+++++.|++|++||++.+..-..+ -.....+.+++.+|++
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 235899999999999999752110000 0123468999999999
Q ss_pred CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE
Q 018293 178 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255 (358)
Q Consensus 178 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 255 (358)
++|++|..-|.+++||+...+.......|+..|.|+.++.. +..++++++.|.-|.+||..... .++..
T Consensus 472 -qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--------~l~qt 542 (1080)
T KOG1408|consen 472 -QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--------DLVQT 542 (1080)
T ss_pred -ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--------chhhh
Confidence 99999999999999999998888888899999999999752 34688999999999999997652 33334
Q ss_pred EeecCCc-------------------------------------------------eeEEEecCCCCcEEEEEeCCCcEE
Q 018293 256 LHAHDKA-------------------------------------------------VCTISYNPLVPNLLATGSTDKMVK 286 (358)
Q Consensus 256 ~~~~~~~-------------------------------------------------i~~i~~~~~~~~~l~~~~~dg~i~ 286 (358)
+.+|... +..++..|.. .++++++.|..|+
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIR 621 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc-ceEEEEecccceE
Confidence 4444444 4445555555 6899999999999
Q ss_pred EEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293 287 LWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 287 i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
|||+++++....+. -..|.+....+...|.|-| +|+.+.|.++.++|..+|+++.+.++|.+.
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 99999998433322 2346788889999999997 889999999999999999999999998764
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.7e-26 Score=191.37 Aligned_cols=225 Identities=17% Similarity=0.237 Sum_probs=190.9
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 142 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~ 142 (358)
++..+++++.||++++|+-...+ ....+.+.+|.+-|.+ +++.+..+..+++|+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~-------------------------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQ-------------------------YLETHAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcc-------------------------cccceecccCcceeeccceeccccCcceEeec
Confidence 45579999999999999965322 2233455678888877 888764355799999
Q ss_pred cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 222 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (358)
.|+++.+|...+..++..+.+|...|.++....++ . +++|+.|.++++|-... ......+|...|++++.-|.+
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC--
Confidence 99999999999999999999999999999988777 4 89999999999997653 333367899999999999843
Q ss_pred eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293 223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 302 (358)
Q Consensus 223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 302 (358)
.+++|+.|.+|++|.-. ..+..+.+|...|+.+++-+++ .+++++.||.|+.|++ +++ ++.+..
T Consensus 153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge--~l~~~~ 216 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGE--VLLEMH 216 (745)
T ss_pred cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCc--eeeeee
Confidence 89999999999999874 6688899999999999999964 6889999999999999 455 688899
Q ss_pred CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 303 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
+|+..|.++....+++ +++++++|+++++|+..
T Consensus 217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 9999999999777777 69999999999999976
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.2e-28 Score=203.51 Aligned_cols=210 Identities=23% Similarity=0.349 Sum_probs=189.5
Q ss_pred cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293 118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197 (358)
Q Consensus 118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 197 (358)
+..|...|.++..-.. ...+++|+.|..+-+|.+.....+..+.+|..+|.++.|++.. .++++|+.+|+|++||++.
T Consensus 24 ~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh
Confidence 3468889999988555 6789999999999999998877788899999999999999998 8999999999999999999
Q ss_pred CCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 277 (358)
.+....+.+|...+.++.|+|.+. +++.|+.|+.+++||.+.. .+.+.+.+|...+..++|+|+| .+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~ 170 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVA 170 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE-Eeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceee
Confidence 988888899999999999999655 7799999999999999976 7888999999999999999998 9999
Q ss_pred EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
.|++|..++|||...++ ...++..|.+.+.++.|+|..- ++++|+.|+++++||+++-+.+..
T Consensus 171 ~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred ccCCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeec
Confidence 99999999999999988 5778889999999999999876 899999999999999997665543
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=191.16 Aligned_cols=307 Identities=16% Similarity=0.257 Sum_probs=229.2
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
.|-|..++++++..+ ..+++|++|..++. |.+. ........+|.|+++.. .+|.++.+++.|++++.++
T Consensus 295 ~fl~~epVl~ta~~D---nSlk~~vfD~~dg~-pR~L-R~R~GHs~Pp~~irfy~------~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 295 TFLPGEPVLVTAGAD---NSLKVWVFDSGDGV-PRLL-RSRGGHSAPPSCIRFYG------SQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred eecCCCceEeeccCC---CceeEEEeeCCCCc-chhe-eeccCCCCCchheeeec------cCcEEEEecccCcchhhhh
Confidence 467888888888665 68899999977653 3322 22234577888998863 5899999999999999998
Q ss_pred cccccCcCceee-------------------------cCCcccccccc----------------cc--cCCceecc-ccc
Q 018293 82 LDVIDEVQPHVI-------------------------LGGIDEEKKKK----------------KS--KKGKKSSI-KYK 117 (358)
Q Consensus 82 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~----------------~~--~~~~~~~~-~~~ 117 (358)
+......+.... +.-.....+-| .. ....+..+ ...
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence 753221111100 00000000000 00 00000000 011
Q ss_pred cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee---cccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293 118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 194 (358)
Q Consensus 118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 194 (358)
++.-...+++++.++. +++.+.|+..|+|-+|++++|-....+ ..|..+|++++...-+ +.+++++.+|.+.+||
T Consensus 444 ~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWD 521 (910)
T ss_pred ccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEe
Confidence 1123367899999999 679999999999999999999888777 5899999999998887 8999999999999999
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
........ .......+.++..+.. ..+++++..|-.|+++|..+. +.++.+.+|...|++++|+||| +
T Consensus 522 f~~k~l~~-~l~l~~~~~~iv~hr~-s~l~a~~~ddf~I~vvD~~t~---------kvvR~f~gh~nritd~~FS~Dg-r 589 (910)
T KOG1539|consen 522 FKKKVLKK-SLRLGSSITGIVYHRV-SDLLAIALDDFSIRVVDVVTR---------KVVREFWGHGNRITDMTFSPDG-R 589 (910)
T ss_pred cCCcceee-eeccCCCcceeeeeeh-hhhhhhhcCceeEEEEEchhh---------hhhHHhhccccceeeeEeCCCC-c
Confidence 98877444 5567778888888874 448888999999999999987 7888999999999999999999 9
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-CeEEEEEccC
Q 018293 275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTLS 337 (358)
Q Consensus 275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~ 337 (358)
+|++++.|++|++||+.++..+-... -..+..++.|+|+|.+ ||+...| ..|++|.-.+
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~~---vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGLL---VDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeEe---cCCcceeeEECCCCCE-EEEEEecCceEEEEEchh
Confidence 99999999999999999998433332 3578999999999995 8888877 6799997543
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7e-25 Score=189.94 Aligned_cols=268 Identities=16% Similarity=0.237 Sum_probs=203.5
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
|.+-|+|..|.++.+++ .+.+|+...+ .+|.....+ ...+.++ ..++.+|++|+.+++|.+
T Consensus 19 i~~d~~gefi~tcgsdg-----~ir~~~~~sd~e~P~ti~~~----g~~v~~i---------a~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDG-----DIRKWKTNSDEEEPETIDIS----GELVSSI---------ACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred EEEcCCCCEEEEecCCC-----ceEEeecCCcccCCchhhcc----CceeEEE---------eecccceEEeeccceEEE
Confidence 35789999888888887 6666766554 334333311 1122233 336679999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
|.+..++...- +...+-++.+++|+.+ ++++|.|+.|-.|++-++.+.....
T Consensus 81 y~fps~~~~~i---------------------------L~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 81 YKFPSGEEDTI---------------------------LARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEK 132 (933)
T ss_pred eeCCCCCccce---------------------------eeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchhe
Confidence 99987654431 2235678999999998 7799999999999999999999999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee--------ecCCeeeEEEcCCCCCeEEEEecCC
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFVVSLEDG 231 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~dg 231 (358)
.+++|..+|.++.|+|.+ .+|++.+-||.|++||+.++........ ....+..++|+|+++ .+++.+.|+
T Consensus 133 ~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~ 210 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDN 210 (933)
T ss_pred eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCC
Confidence 999999999999999999 9999999999999999998765443221 234577899999766 566677899
Q ss_pred eEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeE
Q 018293 232 TIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 309 (358)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 309 (358)
.|++|+.... ...+.+. .+...+..+.|+|+| .|||+++.||.|.|||..+-. . ......|.
T Consensus 211 ~Vkvy~r~~w---------e~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~---~---~~~~~~Vc 274 (933)
T KOG1274|consen 211 TVKVYSRKGW---------ELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE---R---HEFKRAVC 274 (933)
T ss_pred eEEEEccCCc---------eeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch---h---ccccceeE
Confidence 9999999987 4444443 344559999999998 999999999999999998733 1 23346799
Q ss_pred EEEEcCCCCeEEEEEccCCeEEEE
Q 018293 310 SVAFSEDSPFVLAIGGSKGKLEIW 333 (358)
Q Consensus 310 ~~~~~~~~~~~l~~~~~dg~i~vw 333 (358)
+++|.|+..- +-.-...|...+|
T Consensus 275 ~~aw~p~~n~-it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 275 CEAWKPNANA-ITLITALGTLGVS 297 (933)
T ss_pred EEecCCCCCe-eEEEeeccccccC
Confidence 9999998873 4333444444433
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=187.94 Aligned_cols=285 Identities=14% Similarity=0.199 Sum_probs=214.1
Q ss_pred CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccccc
Q 018293 7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID 86 (358)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~ 86 (358)
-|.++.|...+ .+.+|+...++....+.++... +.+++- +|-=+.+|.|..+|+|.++++...+
T Consensus 172 LNKIvvGs~~G-----~lql~Nvrt~K~v~~f~~~~s~----IT~ieq-------sPaLDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 172 LNKIVVGSSQG-----RLQLWNVRTGKVVYTFQEFFSR----ITAIEQ-------SPALDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred eeeEEEeecCC-----cEEEEEeccCcEEEEecccccc----eeEecc-------CCcceEEEEeccCceEEEEEcccCc
Confidence 46788887776 7778887776544444444322 234433 5667899999999999999997654
Q ss_pred CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccc
Q 018293 87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHT 165 (358)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~ 165 (358)
.+. .++.-.+.|+.++|.-||...+++|+..|.+.+||++..+.+..++ .|.
T Consensus 236 il~---------------------------sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~ 288 (910)
T KOG1539|consen 236 ILM---------------------------SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY 288 (910)
T ss_pred EEE---------------------------EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc
Confidence 443 2322248999999999998899999999999999999888777665 788
Q ss_pred cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC----ccceeeec---------------------------------
Q 018293 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH----SGFKWAVA--------------------------------- 208 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~--------------------------------- 208 (358)
+.+....|.|.. ..+++++.|+.+++|=..++.. .+...+|.
T Consensus 289 ~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e 367 (910)
T KOG1539|consen 289 GSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISE 367 (910)
T ss_pred CCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHH
Confidence 899999999988 8999999999888874331110 00000011
Q ss_pred --------------------------------------------------------------------------------
Q 018293 209 -------------------------------------------------------------------------------- 208 (358)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (358)
T Consensus 368 ~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~ 447 (910)
T KOG1539|consen 368 SQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKD 447 (910)
T ss_pred HHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccccc
Confidence
Q ss_pred -CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE---eecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293 209 -ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKM 284 (358)
Q Consensus 209 -~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 284 (358)
..+++++.++ .+++.+.|...|.|-+|++.++ ....++ ..|.++|++++...-+ +.+++++.+|.
T Consensus 448 ~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG---------i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gi 516 (910)
T KOG1539|consen 448 DINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGI 516 (910)
T ss_pred CcceEEEEEec-cCceEEEeccCCeEEEEEcccC---------eeecccccCccccCceeEEEecCCC-ceEEEccCcce
Confidence 1244555555 3567788888888888888877 334444 5899999999999877 88999999999
Q ss_pred EEEEecCCCCce---------------------------------------eeEecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293 285 VKLWDLSNNQPS---------------------------------------CIASRNPKAGAVFSVAFSEDSPFVLAIGG 325 (358)
Q Consensus 285 i~i~d~~~~~~~---------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 325 (358)
+.+||..+..+. .+..+.+|.+.|++++|||||++ |++++
T Consensus 517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisas 595 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISAS 595 (910)
T ss_pred EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEee
Confidence 999998764311 23456789999999999999996 88999
Q ss_pred cCCeEEEEEccCCCcccccccc
Q 018293 326 SKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
.|++|++||+.++.++......
T Consensus 596 mD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred cCCcEEEEeccCcceeeeEecC
Confidence 9999999999999988755443
No 133
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=3.1e-25 Score=170.88 Aligned_cols=278 Identities=19% Similarity=0.274 Sum_probs=195.2
Q ss_pred EEEEEeccCCCCCce-EeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCccccc
Q 018293 23 EVYILEESDGGDPNL-YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEK 101 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 101 (358)
.+.+|+...+....+ ...-+...+..-..++|.- .-.....+||+|+.-|.|+|.|+.+++..
T Consensus 65 rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~y---d~~~~~p~la~~G~~GvIrVid~~~~~~~------------- 128 (385)
T KOG1034|consen 65 RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSY---DSNTGNPFLAAGGYLGVIRVIDVVSGQCS------------- 128 (385)
T ss_pred EEEEEEECCccceeeeeeccCCCCCcceEEEEEEe---cCCCCCeeEEeecceeEEEEEecchhhhc-------------
Confidence 566666554332222 2222222333344566632 11223568999999999999999764443
Q ss_pred ccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee---cccccceeeEEEcCCCC
Q 018293 102 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP 178 (358)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 178 (358)
..+.+|..+|+.|.+.|+..+++++++.|.+|++|++++..++..+ .+|.+.|.++.|++++
T Consensus 129 --------------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g- 193 (385)
T KOG1034|consen 129 --------------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG- 193 (385)
T ss_pred --------------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-
Confidence 3566899999999999998899999999999999999999998887 5799999999999999
Q ss_pred cEEEEEeCCCcEEEEEcccCCCcc----------------------------ceeeecCCeeeEEEcCCCCCeEEEEecC
Q 018293 179 QILLSGSFDRSVVMKDARISTHSG----------------------------FKWAVAADVESLAWDPHAEHSFVVSLED 230 (358)
Q Consensus 179 ~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~d 230 (358)
.++++++.|.++++|++...+... ....|...|.|+.|-- +++++-+-+
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSksce 270 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCE 270 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccC
Confidence 799999999999999997332100 0112455677777753 478888888
Q ss_pred CeEEEEEcccCCCC-----CCCCCCCccEEEeecCCceeEE--EecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-
Q 018293 231 GTIKGFDIRTAKSD-----PDSTSQQSSFTLHAHDKAVCTI--SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN- 302 (358)
Q Consensus 231 g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 302 (358)
+.|..|........ +..........+.-....|.-+ +|.|-+ .+|+.|...|.|.+||++..++....++.
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 89999988432211 1001112222333333444444 455666 79999999999999999988763332222
Q ss_pred -CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 303 -PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 303 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
.....|...+|+.|+. +|+..+.|++|.-||..
T Consensus 350 s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 2356799999999999 57778899999999864
No 134
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=164.57 Aligned_cols=290 Identities=21% Similarity=0.323 Sum_probs=206.8
Q ss_pred CcEEEEEEecCC-CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 7 DAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 7 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
+-.|++|+-.++ ...+++.-++...+ .+....+..++.++..+-|+|-+..-.| ++|||.+ -.+|+|.+...
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~p--dlLATs~--D~LRlWri~~e 131 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVYP--DLLATSS--DFLRLWRIGDE 131 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccCc--chhhccc--CeEEEEeccCc
Confidence 345555544332 23444444443332 3333333456777889999874332223 5777775 57999999742
Q ss_pred cC-cCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc---eeeee
Q 018293 86 DE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTL 161 (358)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~ 161 (358)
+. ......+.. ..-..+..++++..|+.-..+++.+++-|-+..|||++++. ....+
T Consensus 132 e~~~~~~~~L~~-------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 132 ESRVELQSVLNN-------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred CCceehhhhhcc-------------------CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 21 111111110 01124677999999998878899999999999999999873 35566
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee---cCCeeeEEEcCCCCCeEEEEecC-CeEEEEE
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED-GTIKGFD 237 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d 237 (358)
-.|..+|..++|...+.+.|++.+.||.++++|++..+........ ..+...++|++.+.+++++-..| ..|.+.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 7899999999999988889999999999999999987765544432 45688899999999999986554 5799999
Q ss_pred cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----eeeEecCCCCceeEEEEE
Q 018293 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIASRNPKAGAVFSVAF 313 (358)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~ 313 (358)
+|.. ..++..+.+|.+.|+.++|.|.....|++++.|..+.+||+..... ..+.... ..+.|+.+.|
T Consensus 273 iR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W 343 (364)
T KOG0290|consen 273 IRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW 343 (364)
T ss_pred ecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeee
Confidence 9987 4788999999999999999998889999999999999999976321 1122222 3567999999
Q ss_pred cCCCCeEEEEEccCCeEEE
Q 018293 314 SEDSPFVLAIGGSKGKLEI 332 (358)
Q Consensus 314 ~~~~~~~l~~~~~dg~i~v 332 (358)
++...--++.+. ++.+.+
T Consensus 344 s~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 344 SSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cccCCCEEEEEe-cCeeeE
Confidence 975443466554 445544
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.9e-25 Score=176.55 Aligned_cols=285 Identities=16% Similarity=0.246 Sum_probs=210.3
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCc-eEEecCCCCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~v 79 (358)
++|+|..+++++|.-++ .+.+|.......+.+...| ....|+. ...|+|+|. .+++++....++.
T Consensus 219 v~FHp~~plllvaG~d~-----~lrifqvDGk~N~~lqS~~---l~~fPi~------~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDG-----TLRIFQVDGKVNPKLQSIH---LEKFPIQ------KAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred EEecCCCceEEEecCCC-----cEEEEEecCccChhheeee---eccCccc------eeeecCCCceEEEecccceEEEE
Confidence 57999999999998876 5556655443223222222 2223322 224588998 8999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCC-cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
||+.+.+...- ....++ ...+.....+++ +++|+..+..|.|.+....+++.+
T Consensus 285 yDle~ak~~k~-------------------------~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 285 YDLETAKVTKL-------------------------KPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred eeccccccccc-------------------------cCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhh
Confidence 99976443321 122233 345677788999 679999999999999999999999
Q ss_pred eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCe--eeEEEcCCCCCeEEEEecCCeEEEE
Q 018293 159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGF 236 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~dg~i~i~ 236 (358)
..++ -.+.|..++|+.++ ..|++++.+|.|.+||++...... .+...+.+ ++++.+++ +.++++|+..|.|.||
T Consensus 339 ~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~n-g~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 339 TSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLN-GSYLATGSDSGIVNIY 414 (514)
T ss_pred heee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCC-CceEEeccCcceEEEe
Confidence 9888 56789999999999 888888889999999999986555 44444444 45666674 4599999999999999
Q ss_pred EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCCCCceeeEecC---CCCceeEEE
Q 018293 237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRN---PKAGAVFSV 311 (358)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~ 311 (358)
|..+.... ...+++..+..-...|+++.|+|+. .+|+.++. +..+++-.+.+... ...++ ..-+.|+||
T Consensus 415 d~~s~~~s---~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TV--FsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 415 DGNSCFAS---TNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTV--FSNFPTSNTKVGHVTCM 488 (514)
T ss_pred ccchhhcc---CCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceee--eccCCCCCCcccceEEE
Confidence 97654221 1136677777777889999999998 78887765 56689888876541 11222 223569999
Q ss_pred EEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 312 AFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 312 ~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
+|+|.+.| ||.|..+|.+.+|.+.
T Consensus 489 aFSP~sG~-lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 489 AFSPNSGY-LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EecCCCce-EEeecCCCceeeEeec
Confidence 99999995 9999999999999874
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=182.65 Aligned_cols=248 Identities=15% Similarity=0.187 Sum_probs=179.3
Q ss_pred ccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEE
Q 018293 49 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 128 (358)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 128 (358)
++.++|+ |....|++++.|.++++||+.+....... .+.||...|.++
T Consensus 103 ifDl~wa-------pge~~lVsasGDsT~r~Wdvk~s~l~G~~-------------------------~~~GH~~SvkS~ 150 (720)
T KOG0321|consen 103 IFDLKWA-------PGESLLVSASGDSTIRPWDVKTSRLVGGR-------------------------LNLGHTGSVKSE 150 (720)
T ss_pred eEeeccC-------CCceeEEEccCCceeeeeeeccceeecce-------------------------eecccccccchh
Confidence 3477774 55678999999999999999865544321 355899999999
Q ss_pred ecCCCCCcEEEEEEcCCeEEEEECCCCc--------------------e-------eeeecccccceee---EEEcCCCC
Q 018293 129 AWNKEFRNILASASADKQVKIWDVAAGK--------------------C-------NLTLEHHTDKVQA---VAWNHHSP 178 (358)
Q Consensus 129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------------~-------~~~~~~~~~~v~~---~~~~~~~~ 178 (358)
+|.|.+...|++|+.||.|.|||++... + +.....+...|.+ +.+..|.
T Consensus 151 cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe- 229 (720)
T KOG0321|consen 151 CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE- 229 (720)
T ss_pred hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-
Confidence 9999988999999999999999986321 0 0111223344444 4445565
Q ss_pred cEEEEEeC-CCcEEEEEcccCCCcccee--------ee---cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293 179 QILLSGSF-DRSVVMKDARISTHSGFKW--------AV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 246 (358)
Q Consensus 179 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~--------~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 246 (358)
..|++++. |+.|++||++......... .+ .-.+.++..+..|. ++++.+.|+.|++|++.....
T Consensus 230 ~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~--- 305 (720)
T KOG0321|consen 230 STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSI--- 305 (720)
T ss_pred ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCc---
Confidence 67888877 9999999999765432111 11 23467777777555 555555699999999998754
Q ss_pred CCCCCccEEEeecCCc--eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293 247 STSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324 (358)
Q Consensus 247 ~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 324 (358)
.++..+.++... -..-..+|++ .++++|+.|...++|.+.+.+. ....+.+|...|++++|.|..-.-++++
T Consensus 306 ----sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 306 ----SPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATC 379 (720)
T ss_pred ----CchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceee
Confidence 444444444221 1223567888 8999999999999999988764 4556778999999999988543347778
Q ss_pred ccCCeEEEEEccCCC
Q 018293 325 GSKGKLEIWDTLSDA 339 (358)
Q Consensus 325 ~~dg~i~vw~~~~~~ 339 (358)
+.|..+++|++.++-
T Consensus 380 SdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 380 SDDFRVKIWRLSNGL 394 (720)
T ss_pred ccCcceEEEeccCch
Confidence 999999999997654
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=7.7e-25 Score=177.62 Aligned_cols=215 Identities=19% Similarity=0.246 Sum_probs=181.2
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
....|+++|+..+.|+|||+.. ......+.+|+..|+++.++.. ..+||+++
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~---------------------------kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs 140 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRA---------------------------KLIHRFLKDHQSTVTYVDYNNT-DEYIASVS 140 (673)
T ss_pred hcceeeeccCcCceeeehhhHH---------------------------HHHhhhccCCcceeEEEEecCC-cceeEEec
Confidence 3458999999999999999963 3344467789999999999988 67999999
Q ss_pred cCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCC
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHA 220 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 220 (358)
..|.|.|..+.++.....|... ...|.-+.|+|....+|.+++.+|.|.+||+....+.. ....|..+...++|+|.+
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 9999999999998877777643 45677999999987888999999999999998776654 334688999999999999
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 300 (358)
+.++++.+.|..|.+||.+.. .....+ ....+...++|+++| .+|++|...|.|..||++..+. ++..
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~---------~s~~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~-Pv~v 288 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQ---------ASTDRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKA-PVAV 288 (673)
T ss_pred cceEEEecccceEEEeecccc---------ccccee-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCCC-CceE
Confidence 999999999999999999975 222232 345678999999999 9999999999999999998653 6777
Q ss_pred cCCCCceeEEEEEcCCC
Q 018293 301 RNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 301 ~~~~~~~v~~~~~~~~~ 317 (358)
...|...|++++|-|.-
T Consensus 289 ~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 289 RSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecccceeEEEeeecc
Confidence 88899999999998764
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=165.94 Aligned_cols=231 Identities=14% Similarity=0.236 Sum_probs=177.7
Q ss_pred CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc
Q 018293 5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV 84 (358)
Q Consensus 5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~ 84 (358)
-+++.++.|++++ .+.+||.....+.....+|.. .+.++.+.++ ...+.|++|+.||.|.+|+...
T Consensus 51 Vs~~~~aSGssDe-----tI~IYDm~k~~qlg~ll~Hag----sitaL~F~~~-----~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 51 VSGPYVASGSSDE-----TIHIYDMRKRKQLGILLSHAG----SITALKFYPP-----LSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ecceeEeccCCCC-----cEEEEeccchhhhcceecccc----ceEEEEecCC-----cchhheeeecCCCcEEEEEcCC
Confidence 3688999998887 899999887666666666633 3345555321 1123899999999999999964
Q ss_pred ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc
Q 018293 85 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH 164 (358)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 164 (358)
+.....+.+|.+.|+.++.+|. +++.++.+.|+.+++||+-+|+.-..+. .
T Consensus 117 ---------------------------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L 167 (362)
T KOG0294|consen 117 ---------------------------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLN-L 167 (362)
T ss_pred ---------------------------eEEeeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeec-c
Confidence 4555577899999999999999 6788899999999999999887655554 2
Q ss_pred ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293 165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 244 (358)
Q Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 244 (358)
....+.+.|+|.| .+++.+.. ..|-+|.+.+..... ....+..+.++.|.. +..+++|.+|+.|.+||....
T Consensus 168 ~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~-~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~--- 239 (362)
T KOG0294|consen 168 KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFR-EIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSD--- 239 (362)
T ss_pred CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhh-hhhccccceeeeecC--CceEEEecCCceEEEeccCCC---
Confidence 2334559999999 55666554 468889887665443 222335577777765 458999999999999999986
Q ss_pred CCCCCCCccEEEeecCCceeEEEec--CCCCcEEEEEeCCCcEEEEecCCC
Q 018293 245 PDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
.+...+.+|...|.++.+. |++ .+|++++.||.|+|||++..
T Consensus 240 ------~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 ------TPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ------ccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 7888999999999999854 444 79999999999999999876
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=173.15 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=187.3
Q ss_pred CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee---------------ecCCcccceeeecCCccccCCCceEE
Q 018293 5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI---------------IIPAFPLCMAWLDCPLKDREKGNFMA 69 (358)
Q Consensus 5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~s~~~~~l~ 69 (358)
..||++|+|..+. .|.||.++....-.|.+...... ......+.+.|.. ...+.||
T Consensus 190 ~~gNyvAiGtmdp---~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~------~~~nVLa 260 (463)
T KOG0270|consen 190 GAGNYVAIGTMDP---EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR------NFRNVLA 260 (463)
T ss_pred CCcceEEEeccCc---eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc------ccceeEE
Confidence 3588999997774 56666666665544555443110 1112223455532 1357899
Q ss_pred ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293 70 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 149 (358)
Q Consensus 70 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 149 (358)
+|+.|.+|.+||++++++.. .+..|.+.|.+++|+|.....|++|+.|++|.+
T Consensus 261 SgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l 313 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVAL 313 (463)
T ss_pred ecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccceEEe
Confidence 99999999999998766554 344699999999999998999999999999999
Q ss_pred EECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293 150 WDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFVVS 227 (358)
Q Consensus 150 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 227 (358)
.|.+.... -..++ ..+.|..++|.|.....++++..||+++-+|+|.. +++.....|..+|.++++++..+++++++
T Consensus 314 ~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 314 KDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred eeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec
Confidence 99984322 22233 45779999999999899999999999999999987 55666778999999999999989999999
Q ss_pred ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
+.|+.|++|++..... +.+......-+...|.++.|+-..+++.|+..+.++|||+.+..+
T Consensus 393 s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 9999999999987633 112211111233678888898877899999999999999988764
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-24 Score=174.71 Aligned_cols=270 Identities=20% Similarity=0.268 Sum_probs=200.5
Q ss_pred EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEec--CCCCeEEEEEcccccCcCceeecCCcccc
Q 018293 23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG--SMEPAIEIWDLDVIDEVQPHVILGGIDEE 100 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 100 (358)
.+.+||........-|.|++.... ...+.| +... +|+++ +.|..|++|.-+.....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w-------~~~n-~lvvas~~gdk~~~~~~K~g~~~~------------ 70 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNW-------QRRN-FLVVASMAGDKVMRIKEKDGKTPE------------ 70 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeec-------cccc-eEEEeecCCceeEEEecccCCCCc------------
Confidence 666677665544566777764443 445666 4333 35444 56788999986532111
Q ss_pred cccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcE
Q 018293 101 KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180 (358)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (358)
......+.+. .-.|++.... ..++++|+..+.|+|||++...+.+.+++|.+.|+++.++..+ .+
T Consensus 71 -----------Vp~~~k~~gd--~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-ey 135 (673)
T KOG4378|consen 71 -----------VPRVRKLTGD--NAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EY 135 (673)
T ss_pred -----------cceeeccccc--hHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ce
Confidence 1111122222 3344444444 3689999999999999999777778889999999999999887 89
Q ss_pred EEEEeCCCcEEEEEcccCCCccceeee-cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec
Q 018293 181 LLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 259 (358)
Q Consensus 181 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 259 (358)
|++++..|.|.+..+.++.....+... ...+.-+.|+|....++.+++.+|.|.+||+.... ....-...|
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s--------p~~~~~~~H 207 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--------PIFHASEAH 207 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC--------cccchhhhc
Confidence 999999999999999887765533332 34566899999878788889999999999998762 333445789
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 260 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
..+...|+|+|..+.+|++.+.|+.|.+||.+..+...... ...+...++|.++|.+ |+.|...|.|..||++..+
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTY-LCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceE-EEeecCCceEEEEecccCC
Confidence 99999999999988999999999999999999766322222 3467899999999995 8889999999999998755
Q ss_pred cc
Q 018293 340 GI 341 (358)
Q Consensus 340 ~~ 341 (358)
..
T Consensus 284 ~P 285 (673)
T KOG4378|consen 284 AP 285 (673)
T ss_pred CC
Confidence 43
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.9e-25 Score=163.61 Aligned_cols=212 Identities=25% Similarity=0.332 Sum_probs=174.3
Q ss_pred CCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---ceeeeecccccceeeEEEc-CCCCcEEEEEeCCCcEEEEE
Q 018293 119 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKD 194 (358)
Q Consensus 119 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d 194 (358)
..|++.|..+...-- +..||+++.|++|+|+.++.. +++.++.+|.++|..++|. |.-+.+|++++.||.|.+|.
T Consensus 8 t~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 368888988887766 679999999999999999765 4678899999999999995 44448999999999999999
Q ss_pred cccCCCc--cceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293 195 ARISTHS--GFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271 (358)
Q Consensus 195 ~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 271 (358)
-..++-. .....|...+++++|.|++ +..|++++.||.|.+.+.+.... .........|.-.|++++|.|.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~------w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------WTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC------ccchhhhhccccccceeeecCc
Confidence 8877432 2344688999999999964 34678899999999999987621 1334456789999999999985
Q ss_pred ---C----------CcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC---CeEEEEEccCCeEEEEEc
Q 018293 272 ---V----------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 272 ---~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vw~~ 335 (358)
| .+.|++|+.|..|+||+..+.+......+.+|...|+.++|.|.- +..+|+++.||++.||..
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 2 146999999999999999987665566689999999999999963 445999999999999987
Q ss_pred cC
Q 018293 336 LS 337 (358)
Q Consensus 336 ~~ 337 (358)
..
T Consensus 241 ~~ 242 (299)
T KOG1332|consen 241 DE 242 (299)
T ss_pred cC
Confidence 63
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=178.58 Aligned_cols=252 Identities=20% Similarity=0.250 Sum_probs=181.5
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
...+||.+.+||.|.++|....... .+.........|...|..+.|-| +...|++++.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasG 120 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASG 120 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEccC
Confidence 4568999999999999998642221 01222234557999999999999 5889999999
Q ss_pred CCeEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-------------------
Q 018293 144 DKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------- 202 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------- 202 (358)
|.++++||+++.++... +.+|...+.+++|.|.++..|++|+.||.|.|||++......
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999988776 889999999999999998999999999999999987433100
Q ss_pred --------ceeeecC----CeeeEEEcCCCCCeEEEEec-CCeEEEEEcccCCCCCCCCCCCccEEEeec---CCceeEE
Q 018293 203 --------FKWAVAA----DVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCTI 266 (358)
Q Consensus 203 --------~~~~~~~----~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~i~~i 266 (358)
....+.. .|+.+.| .| +..|++++. |+.|+|||+++......... .....+..| ...+.++
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep-~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP-RGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred chhhccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCC-CcccCccCcccceeeeEEE
Confidence 0001112 2444444 43 446777665 99999999998754221111 112222333 3457788
Q ss_pred EecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce--eEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 267 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 267 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
.....| .+|++.+.|+.|+.|++.+.....+..+.++... -..-..+|++.+ +++|+.|...++|.+.+.+.-.
T Consensus 278 ~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 278 ILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCCh
Confidence 888877 6666666699999999998765556555554321 222356899996 8899999999999998866543
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=5e-23 Score=167.41 Aligned_cols=288 Identities=15% Similarity=0.229 Sum_probs=201.9
Q ss_pred cccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCC-ceEEecCCCCeEEE
Q 018293 2 TINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG-NFMAVGSMEPAIEI 79 (358)
Q Consensus 2 ~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~v 79 (358)
+|++ ++..++++-.++....+.+|.|+.+.. .-.... .....+..+| +|.+ +++++++ .|.+..
T Consensus 161 aFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk~-----sne~v~~a~F-------HPtd~nliit~G-k~H~~F 226 (626)
T KOG2106|consen 161 AFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVKT-----SNEVVFLATF-------HPTDPNLIITCG-KGHLYF 226 (626)
T ss_pred eecccCCCceEEEecCCCccccchhhchhhhc-cCccee-----ccceEEEEEe-------ccCCCcEEEEeC-CceEEE
Confidence 4555 333344443444446677777776542 111111 1222234444 6665 4555555 789999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
|+...+.......++.+ ..+.-|.|++|.++| -+++|..+|.|.||+..+.+..+
T Consensus 227 w~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred EEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEe
Confidence 99876655443333221 122679999999994 37899999999999998888777
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC---------------------------------------
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--------------------------------------- 200 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------------------------------- 200 (358)
....|++.|.+++...+| .|++|+.|..|..||-.-.+.
T Consensus 282 ~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 777999999999999998 467799999999998321100
Q ss_pred -ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 201 -SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 201 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
......|......++.+|+ .+.+++++.|+.+++|+ .. ++..... -..+..|+.|+|.| .++.|
T Consensus 360 f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~---------k~~wt~~-~~d~~~~~~fhpsg--~va~G 424 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DH---------KLEWTKI-IEDPAECADFHPSG--VVAVG 424 (626)
T ss_pred ceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CC---------ceeEEEE-ecCceeEeeccCcc--eEEEe
Confidence 0011234456777888994 56899999999999999 22 4444433 35678999999986 89999
Q ss_pred eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293 280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 349 (358)
+..|...+.|.++... +..... ..+++.++|+|+|.+ ||.|+.|+.|++|.+..+...........
T Consensus 425 t~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred eccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 9999999999999663 333333 789999999999995 99999999999999987666555554443
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-23 Score=159.34 Aligned_cols=299 Identities=11% Similarity=0.101 Sum_probs=201.2
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEE-ecCCCCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~v 79 (358)
|+|+.+|..|++++.++ .+.+|+..+- ....| .......+.. .|..++|+||-+-++ ..-...++++
T Consensus 92 ~~FsSdGK~lat~~~Dr-----~Ir~w~~~DF---~~~eH-r~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDR-----SIRLWDVRDF---ENKEH-RCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred eEEcCCCceeEEEeCCc-----eEEEEecchh---hhhhh-hHhhccccCC---CceEEEECCCcceEEEEEccCCEEEE
Confidence 57999999999998887 6667776552 11112 1111111111 233556789966554 4455668999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
|.+...+.-.- ... ....-.......|.-.|..+-.... +.+|++++.|..|.+|+++ |+.+.
T Consensus 160 yk~~K~~dG~~-~~~--------------~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 160 YKLVKKTDGSG-SHH--------------FVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred EEeeecccCCC-Ccc--------------cccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceee
Confidence 98864322100 000 0001111122346667777777666 7799999999999999998 88999
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC--------CccceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 231 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 231 (358)
.+......-+..+.+|+| +++++++..--+++|.+--.+ ....+.+|.+.|..++|+++ ...+++.+.||
T Consensus 223 ~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkDG 300 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKDG 300 (420)
T ss_pred eeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecCC
Confidence 988777778889999999 999999999999999974221 12335678999999999995 56899999999
Q ss_pred eEEEEEcccCCCCCCCCCCCccEE----EeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce
Q 018293 232 TIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 307 (358)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 307 (358)
.+++||..-.....+.+ ..+.. +..-.+.-..+..+|.| ..|+... ...+++|..++++..... -..|...
T Consensus 301 ~wriwdtdVrY~~~qDp--k~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~~~~~-e~~h~~~ 375 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDP--KILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKDYPEL-EDIHSTT 375 (420)
T ss_pred cEEEeeccceEecCCCc--hHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCccchhH-HHhhcCc
Confidence 99999987543221111 11111 11223334589999998 6665543 567999999988743322 2458899
Q ss_pred eEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 308 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 308 v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
|.+++|+++|++ +++++ |..++++.-..
T Consensus 376 Is~is~~~~g~~-~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 376 ISSISYSSDGKY-IATCG-DRYVRVIRNTP 403 (420)
T ss_pred eeeEEecCCCcE-Eeeec-ceeeeeecCCC
Confidence 999999999996 77665 67888887433
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.5e-24 Score=176.17 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=197.3
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++..|...+++.||+ .|-|+|||+.......+...+. .......|.++.+.|+ ++.
T Consensus 424 AvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLd----------------------cl~rdnyiRSckL~pd-grt 479 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLD----------------------CLNRDNYIRSCKLLPD-GRT 479 (705)
T ss_pred EEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccc----------------------ccCcccceeeeEecCC-Cce
Confidence 455578888999998 5789999997543333222111 1123467999999999 567
Q ss_pred EEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293 138 LASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 215 (358)
|++|+.-.++.|||+....+ ...+....-.+.+++.+||. ++.+++..||.|.|||+.+...+..+.+|...+.|+.
T Consensus 480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 88899999999999986543 33344344567889999999 8899999999999999999999988899999999999
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
.+++ +..+.+|+-|++|+.||++.+. .+.. ....+.|.++..+|.+ .+|+.|-.++.+.|......+
T Consensus 559 is~d-GtklWTGGlDntvRcWDlregr---------qlqq-hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~- 625 (705)
T KOG0639|consen 559 ISKD-GTKLWTGGLDNTVRCWDLREGR---------QLQQ-HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE- 625 (705)
T ss_pred ecCC-CceeecCCCccceeehhhhhhh---------hhhh-hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-
Confidence 9995 5589999999999999999873 2222 1235789999999998 899999999999998887665
Q ss_pred eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
...+..|..-|.++.|.+.|++ +++.+.|+.+..|.+.-|..+.+
T Consensus 626 --kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyGasiFq 670 (705)
T KOG0639|consen 626 --KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQ 670 (705)
T ss_pred --ceeecccccEEEEEEecccCce-eeecCchhhhhhccCccccceee
Confidence 5567778999999999999996 88899999999999988877654
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=5.3e-24 Score=170.93 Aligned_cols=210 Identities=20% Similarity=0.300 Sum_probs=171.9
Q ss_pred ccCCCcccEEEEecCCCCC-cEEEEEEcCCeEEEEECCCC----ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEE
Q 018293 117 KKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV 191 (358)
Q Consensus 117 ~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 191 (358)
...-+.+.|++++|+|... +++|+|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.+.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 3445789999999999855 68999999999999999533 235566789999999999998888999999999999
Q ss_pred EEEcccCCCccceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293 192 MKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 269 (358)
Q Consensus 192 i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 269 (358)
+-|++.......... ....+..+.|+.+.. .++.+..=|...+||++... .....+..|...|++++++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~--------s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDG--------SEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCC--------ccchhhhhhhcccceeecC
Confidence 999987754432222 445677788887554 56666666799999999983 4466677888899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCcee--eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 270 PLVPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
|..+.+|+|++.|++.+|||++...... ......|...|.++.|||.+.. |+|-+.|..|+|||..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 9998999999999999999998754322 3556679999999999999885 8889999999999984
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.4e-25 Score=195.05 Aligned_cols=215 Identities=18% Similarity=0.312 Sum_probs=177.7
Q ss_pred cccEEEEecCCCCCc---EEEEEEcCCeEEEEECCC---C---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEE
Q 018293 122 TDSVLGLAWNKEFRN---ILASASADKQVKIWDVAA---G---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 192 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~---~l~s~~~dg~v~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 192 (358)
...-+.++|.+.+.. +||.|..||.|.+||... + ..+.+...|.+.|..+.|++..++++++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999887554 599999999999999865 2 3456777899999999999999789999999999999
Q ss_pred EEcccCCCccce--eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC--CceeEEEe
Q 018293 193 KDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISY 268 (358)
Q Consensus 193 ~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~ 268 (358)
||+...+..... ....+.|.+++|+..-..+|++++.+|.+.|||+|.. +++..+..+. ..+..++|
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---------~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---------KPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---------CcccccccCCCccceeeeee
Confidence 999986654433 2345789999999988889999999999999999987 5555555443 35789999
Q ss_pred cCCCCcEEEEEeCCCc---EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 269 NPLVPNLLATGSTDKM---VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 269 ~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
+|++...|++++.|.. |.+||+|.... .+..+.+|...|.++.|++.+..+|++++.|+.|.+|+.++++.+.++-
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 9998778888877654 99999987653 5667789999999999999885579999999999999999998877654
Q ss_pred c
Q 018293 346 S 346 (358)
Q Consensus 346 ~ 346 (358)
.
T Consensus 294 ~ 294 (1049)
T KOG0307|consen 294 A 294 (1049)
T ss_pred C
Confidence 4
No 148
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.92 E-value=8.5e-23 Score=175.83 Aligned_cols=274 Identities=18% Similarity=0.284 Sum_probs=204.6
Q ss_pred EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293 23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK 102 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 102 (358)
.+++|+......|.+.... +....|+.+.++ +..+||.|..+|.|.+||+..+....
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~----~s~v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~------------- 279 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLES----PSEVTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTP------------- 279 (555)
T ss_pred eEEEEecCCCCCceEEEec----CCceeEEEeccC------CcceEEeeccCceEEEEEccCCCCCC-------------
Confidence 5778888775444544443 334456666443 56789999999999999997654421
Q ss_pred cccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCCCceee------eec------cccccee
Q 018293 103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKCNL------TLE------HHTDKVQ 169 (358)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~------~~~------~~~~~v~ 169 (358)
..........|..+++.+.|..+- +.-+++++.||.|+.|+++.-.... ... .....++
T Consensus 280 --------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 280 --------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT 351 (555)
T ss_pred --------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence 122223445799999999996541 1358899999999999886432211 111 1234688
Q ss_pred eEEEcCCCCcEEEEEeCCCcEEEEEcccCCC--------ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 170 AVAWNHHSPQILLSGSFDRSVVMKDARISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 170 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
+++|.+..+..++.|+..|.|.--+....+. ......|.++|.++.++|.....+++++ |.++++|.....
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~ 430 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI 430 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC
Confidence 9999999889999999999998744332221 1234457889999999999887777777 999999998832
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 321 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 321 (358)
..++..+..+...+++++|+|..+..++++..||.+.+||+......++.....+....+.+.|++.|+ ++
T Consensus 431 --------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~l 501 (555)
T KOG1587|consen 431 --------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LL 501 (555)
T ss_pred --------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EE
Confidence 267777888888899999999988899999999999999998776555666555567788899999999 69
Q ss_pred EEEccCCeEEEEEccC
Q 018293 322 AIGGSKGKLEIWDTLS 337 (358)
Q Consensus 322 ~~~~~dg~i~vw~~~~ 337 (358)
++|...|.+.+|++..
T Consensus 502 avGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSE 517 (555)
T ss_pred EEecCCCcEEEEEcCc
Confidence 9999999999999953
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=170.18 Aligned_cols=237 Identities=19% Similarity=0.268 Sum_probs=190.3
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccC-CCcccEEEEecCCCCCcEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l 138 (358)
+|+.+.+.||.+-.||.|.||++... +.....+. +..+.|.+++|++. ..|
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~drsIE~L~W~e~--~RL 83 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPEDRSIESLAWAEG--GRL 83 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCCCCceeeEEEccC--CeE
Confidence 44888999999999999999999742 11222222 34568999999965 378
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEE
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 216 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~ 216 (358)
++.+.+|.|.-||+.+++....+....+.|.+++.+|.+ ..++.|+.||.+..++...+.... .+....+.+.+++|
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 899999999999999999999999999999999999998 889999999977777776554322 22345688999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-------ee-cCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293 217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HA-HDKAVCTISYNPLVPNLLATGSTDKMVKLW 288 (358)
Q Consensus 217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 288 (358)
+|+ +..++.|+.||.|++||..++. .+... .. ...-|.++.+-.+ ..|++|...|+|.+|
T Consensus 163 ~~~-~~~i~~Gs~Dg~Iriwd~~~~~---------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 163 NPT-GTKIAGGSIDGVIRIWDVKSGQ---------TLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFW 230 (691)
T ss_pred cCC-ccEEEecccCceEEEEEcCCCc---------eEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEE
Confidence 995 4579999999999999999873 23211 11 2234677777765 489999999999999
Q ss_pred ecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 289 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
|...+. .+..+..|.+.|.+++..+++.+ +.++|.|+.|.-|...+++.
T Consensus 231 d~~~gT--LiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 231 DSIFGT--LIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred cccCcc--hhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCcc
Confidence 999988 57778889999999999999885 88899999999998877654
No 150
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=161.66 Aligned_cols=240 Identities=17% Similarity=0.256 Sum_probs=178.2
Q ss_pred ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEEEEEEcC
Q 018293 66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASAD 144 (358)
Q Consensus 66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d 144 (358)
..+|++-..|.|++||..+++.+. .+.++...++.+.|... +.+.+.+|+.|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---------------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssD 93 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---------------------------EFKGPPATTNGVRFISCDSPHGVISCSSD 93 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---------------------------eecCCCCcccceEEecCCCCCeeEEeccC
Confidence 578999999999999998765554 45567788888888653 57789999999
Q ss_pred CeEEEEECCCCceeeee--cccc-cceeeEEEcCCCCcEEEEEe----CCCcEEEEEcccCCCc--cceeeecCCeeeEE
Q 018293 145 KQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGS----FDRSVVMKDARISTHS--GFKWAVAADVESLA 215 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~ 215 (358)
|+|++||++.......+ ..+. .+..+++..-.+ +++++|. .+..+.+||+|..+.. .....|...|+++.
T Consensus 94 G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 94 GTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred CeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 99999999987554444 3343 456667666555 6777775 3678999999988763 23446889999999
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
|+|.+++++++|+.||.|.+||+..... ...+.....|...|.++.|..++-..|.+-+..+...+|+++.+..
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 9999999999999999999999987622 1334444567778999999887655788888888899998865431
Q ss_pred e-----------------------------------------------------------eeEecC-CCCceeEEEEEcC
Q 018293 296 S-----------------------------------------------------------CIASRN-PKAGAVFSVAFSE 315 (358)
Q Consensus 296 ~-----------------------------------------------------------~~~~~~-~~~~~v~~~~~~~ 315 (358)
. ....+. +|...|.++.|..
T Consensus 247 ~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 247 ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV 326 (376)
T ss_pred hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc
Confidence 1 001111 2344466666766
Q ss_pred CCCeEEEEEccCCeEEEEEccCCCc
Q 018293 316 DSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
.+. ++.+||.||.+.+|.......
T Consensus 327 ~~~-~l~TGGEDG~l~~Wk~~da~e 350 (376)
T KOG1188|consen 327 KND-VLYTGGEDGLLQAWKVEDATE 350 (376)
T ss_pred ccc-eeeccCCCceEEEEecCCccc
Confidence 666 699999999999999654333
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.8e-22 Score=167.22 Aligned_cols=237 Identities=14% Similarity=0.127 Sum_probs=164.3
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
++.+++++.|+.|++||+.+++... .+..+ ..+.+++|+|++..++++++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---------------------------~~~~~-~~~~~l~~~~dg~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---------------------------TFPVG-QRPRGITLSKDGKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---------------------------EEECC-CCCCceEECCCCCEEEEEECCC
Confidence 3578899999999999997644322 12223 3367899999955445677889
Q ss_pred CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293 145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 224 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (358)
+.|++||..+++....+..+.. +..++|+|++..++++++.++.+++||+++.+... .......+..++|+|++. ++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~-~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGK-IV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCC-EE
Confidence 9999999999888777765443 56789999994444555678999999998765433 223334578899999654 67
Q ss_pred EEEecCC-eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE-EEEeCCCcEEEEecCCCCceeeEecC
Q 018293 225 VVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRN 302 (358)
Q Consensus 225 ~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~ 302 (358)
+++..++ .+.+||.++. ....... ......+++|+|++ .+| +++..++.|++||+++++........
T Consensus 130 ~~~~~~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEEecCCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 7766654 5677898765 3333222 23345789999998 555 55556999999999987643222221
Q ss_pred C---C--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 303 P---K--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 303 ~---~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
. + ......++|+|++++++++.+.++.+.+||+.+++.+..
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 1 1 112346889999997666666678899999988776543
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-22 Score=168.22 Aligned_cols=276 Identities=18% Similarity=0.239 Sum_probs=211.1
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCC--CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
|+++-+.+.||+++.++ .+-+|+.... .++.+..+.+ ..+-.+.| + ++.+|.+.+.+|.|.
T Consensus 31 lA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g~~d----rsIE~L~W-------~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHGPED----RSIESLAW-------A-EGGRLFSSGLSGSIT 93 (691)
T ss_pred EEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEecCCC----CceeeEEE-------c-cCCeEEeecCCceEE
Confidence 46788888999998876 5566665543 2223333332 22235666 4 566788888899999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
-||+.+.+... .+....+.|++++.+|. +..++.|+.||.+..++...++..
T Consensus 94 EwDl~~lk~~~---------------------------~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 94 EWDLHTLKQKY---------------------------NIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred EEecccCceeE---------------------------EecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEE
Confidence 99997654433 34456789999999999 679999999998888887777554
Q ss_pred e--eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee----e----ecCCeeeEEEcCCCCCeEEEEe
Q 018293 159 L--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSFVVSL 228 (358)
Q Consensus 159 ~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~----~~~~i~~~~~~~~~~~~~~~~~ 228 (358)
. .+...++.+.++.|+|++ ..+++|+.||.|++||...+....... . ...-|+++.|-.+ ..+++|.
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgD 222 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGD 222 (691)
T ss_pred EEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEec
Confidence 3 334456889999999999 889999999999999998876544111 1 2233777777753 3899999
Q ss_pred cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc--eeeEecCCCCc
Q 018293 229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAG 306 (358)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~ 306 (358)
..|.|++||...+ ..+.....|...|.+++..+++ ..+++++.|+.|..|...+... ........|..
T Consensus 223 S~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h 292 (691)
T KOG2048|consen 223 SAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH 292 (691)
T ss_pred CCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcc
Confidence 9999999999988 7888899999999999999987 8999999999999998877643 23344567888
Q ss_pred eeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 307 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 307 ~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.|.+++..++ .+++|+.|..+.+-....
T Consensus 293 dvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 293 DVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred cceeeeeecc---eEEecceeeEEEEccccc
Confidence 8999999988 588999999988876654
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=3.2e-22 Score=151.86 Aligned_cols=207 Identities=20% Similarity=0.347 Sum_probs=165.4
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-eeeec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 193 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 193 (358)
.+-+.|.|+.|.|+ +..+++-. |..|.+|+++.+.. +..+. ++....++-+|+|......+....|+++..|
T Consensus 121 eavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence 45568999999998 55666554 88999999987755 33332 3566788889999322334445569999999
Q ss_pred EcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 194 DARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 194 d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
|+++..... ....|...+..+.|+|+...++++++.||.|++||.|+. ..+++.+.+|...+.++.|+|..
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence 999776543 334577889999999998889999999999999999987 37899999999999999999988
Q ss_pred CcEEEEEeCCCcEEEEecCCCC------------------------c---eeeEecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293 273 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG 325 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~~~~~------------------------~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 325 (358)
..++++|+.|..|.+|....-. + -.+..+..|...|.+++|+.-.++++|+-+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 7899999999999999763311 0 123456778899999999999999999999
Q ss_pred cCCeEEEEEcc
Q 018293 326 SKGKLEIWDTL 336 (358)
Q Consensus 326 ~dg~i~vw~~~ 336 (358)
.||.+.|=.+.
T Consensus 351 YDGRviIs~V~ 361 (370)
T KOG1007|consen 351 YDGRVIISSVP 361 (370)
T ss_pred cCceEEeecCC
Confidence 99999886654
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=156.36 Aligned_cols=251 Identities=17% Similarity=0.323 Sum_probs=182.3
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-------C
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-------K 132 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~ 132 (358)
.|||||.-|++-+.|..+.+|++......... +. +...+...... ......|...+|- |
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~------~~-------~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA------DG-------PLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCC------CC-------ccccccceeEE-eccCCEEEEEEeeeccccCCC
Confidence 35999999999999999999998632111100 00 00000001111 1133567777774 5
Q ss_pred CCCcEEEEEEcCCeEEEEECCCCceeeeecc--ccc---ceeeEEEcCCCCcEEEEEeCCCcEEEEEc-ccCCCcc--c-
Q 018293 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDA-RISTHSG--F- 203 (358)
Q Consensus 133 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~--~- 203 (358)
+ ..++++.+.+.-|++||.-+|+....+.+ |.+ ...+++|+||| ..|++ +....|+++|+ +.+.... .
T Consensus 122 ~-t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 122 S-TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred c-cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhh
Confidence 5 67999999999999999999988777654 322 45689999999 55654 55789999999 4433211 1
Q ss_pred ----eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 204 ----KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 204 ----~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
..+..+-+.+++|+|.+...+++|+....+-+|.-... .+++.+.+|.+.|+.++|.++| +.|++|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG-n~lfsG 268 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG-NKLFSG 268 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc-Ceeccc
Confidence 12335678999999998889999999999999888776 7888999999999999999999 677777
Q ss_pred eC-CCcEEEEecCCCCceeeEecCCCCc-eeEE--EEEcCCCCeEEEEEccCCeEEEEEccC-CC
Q 018293 280 ST-DKMVKLWDLSNNQPSCIASRNPKAG-AVFS--VAFSEDSPFVLAIGGSKGKLEIWDTLS-DA 339 (358)
Q Consensus 280 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~ 339 (358)
+. |..|..||++..+. .+..+..|.+ .-.. ....|+++ +|++|+.||.|++||+++ +.
T Consensus 269 aRk~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ccCCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCC
Confidence 65 77899999998653 4556666644 2223 44568899 599999999999999987 44
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=5e-23 Score=173.08 Aligned_cols=271 Identities=17% Similarity=0.329 Sum_probs=204.6
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
++|.|+|..++.+..+ ++++|+..++...+....|+.. +.|++| +.||+++|+|+.|..|.+|
T Consensus 18 ~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDt----VycVAy-------s~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDT----VYCVAY-------AKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred eEECCCCceEEEecCC------EEEEEeCCCcccccccccccce----EEEEEE-------ccCCceeccCCCceeEEEe
Confidence 5789999999999444 9999999998776655555333 348777 8999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
+-.-...+. ..|.+.|.|+.|+|- .+.|++++-+ ..-+|..+... +..
T Consensus 81 ~~klEG~Lk-----------------------------YSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~-V~K 128 (1081)
T KOG1538|consen 81 TSKLEGILK-----------------------------YSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKS-VSK 128 (1081)
T ss_pred cccccceee-----------------------------eccCCeeeEeecCch-HHHhhhcchh-hccccChhhhh-HHh
Confidence 865322211 259999999999999 6788888764 57889866443 222
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecCCeeeEEEcCCCC----CeEEEEecCCeEE
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE----HSFVVSLEDGTIK 234 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~----~~~~~~~~dg~i~ 234 (358)
.+ ....+.+++|..|| ++++.|-.+|+|.+-+-...+...... +..++|.+++|+|..+ ..+++.....++.
T Consensus 129 ~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 129 HK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred hh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 22 34678899999999 999999999999998755444433222 3567899999999632 4677777788888
Q ss_pred EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 314 (358)
+|.+... .+..-..-.-...|+.+.|+| .+++.|+.|+.+.+|-...- .+.+.......|+.++..
T Consensus 207 Fy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 207 FYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCe---EEeeccccceeEEEEEEc
Confidence 8887643 122112222334688999998 89999999999999975443 355555677899999999
Q ss_pred CCCCeEEEEEccCCeEEEEEccC
Q 018293 315 EDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
|++++ ++.|+.||+|.-|++..
T Consensus 273 PNsQ~-v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 273 PNSQY-VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCce-EEEEEccCeeehhhhHH
Confidence 99996 88899999999999864
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.9e-23 Score=156.69 Aligned_cols=209 Identities=18% Similarity=0.226 Sum_probs=162.3
Q ss_pred cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-----eeeecccccceeeEEEcCCCCcEEEEEeCCC
Q 018293 114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 188 (358)
Q Consensus 114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (358)
....+++|.+.|++++|+.+ +++|++++.|++|++|++++... ++.-- .-+..+.+.|.||...++++.-...
T Consensus 78 ~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCC
Confidence 34567899999999999999 77999999999999999986432 11111 1235688999999977777777788
Q ss_pred cEEEEEcccCCCcc------------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE
Q 018293 189 SVVMKDARISTHSG------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 256 (358)
Q Consensus 189 ~i~i~d~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 256 (358)
++++|-+...+.-. ....|.-.+..+-... +..++++++.|..|.+|+++ + +.+..+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G---------q~L~~i 224 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G---------QLLQSI 224 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C---------ceeeee
Confidence 89999875433211 1112334455555554 56799999999999999999 4 667777
Q ss_pred eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeE
Q 018293 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL 330 (358)
Q Consensus 257 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 330 (358)
......-...+.+|+| +++++++..-.|++|.+--. +...++.+.+|...|..++|+++.+ .+++.+.||.+
T Consensus 225 dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~w 302 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKW 302 (420)
T ss_pred ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcE
Confidence 7766777888999999 89999999899999987432 2235677899999999999999999 59999999999
Q ss_pred EEEEccC
Q 018293 331 EIWDTLS 337 (358)
Q Consensus 331 ~vw~~~~ 337 (358)
++||+.-
T Consensus 303 riwdtdV 309 (420)
T KOG2096|consen 303 RIWDTDV 309 (420)
T ss_pred EEeeccc
Confidence 9999863
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=154.88 Aligned_cols=282 Identities=18% Similarity=0.279 Sum_probs=203.0
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCC-------CCCceEeece--eecCCcccceeeecCCccccCCCceEEecC
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDG-------GDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVGS 72 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 72 (358)
..+|+|.-|++-..++ .+.+|+...+ .......+.. ......+....|.+.--.--|+..++|+.+
T Consensus 56 kWSPDGSciL~~sedn-----~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDN-----CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred eeCCCCceEEeecccC-----eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4689999999997776 5555554221 1111111221 122333445667654333468889999999
Q ss_pred CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcc---cEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293 73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---SVLGLAWNKEFRNILASASADKQVKI 149 (358)
Q Consensus 73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~dg~v~i 149 (358)
.+.-|.+||.-+++........ .|.. ...+++|+|| +..|++| ....|++
T Consensus 131 r~~PIh~wdaftG~lraSy~~y-------------------------dh~de~taAhsL~Fs~D-GeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAY-------------------------DHQDEYTAAHSLQFSPD-GEQLFAG-YKRCIRV 183 (406)
T ss_pred ccCceeeeeccccccccchhhh-------------------------hhHHhhhhheeEEecCC-CCeEeec-ccceEEE
Confidence 9999999999876654432211 2333 3458999999 5577665 5578999
Q ss_pred EEC-CCCce--ee-ee----cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293 150 WDV-AAGKC--NL-TL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 221 (358)
Q Consensus 150 wd~-~~~~~--~~-~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (358)
+|+ +.|.- +. ++ .+..+-+.+++|+|.....++.++....+-||.-....+.....+|.+.|+.+.|.++++
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence 999 44422 11 11 123677899999998878999999999999999888888888889999999999999776
Q ss_pred CeEEEE-ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC-ceeEE--EecCCCCcEEEEEeCCCcEEEEecCC-CCce
Q 018293 222 HSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTI--SYNPLVPNLLATGSTDKMVKLWDLSN-NQPS 296 (358)
Q Consensus 222 ~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i--~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~ 296 (358)
.+++| -.+-.|..||+|.. ..++..+..|.. .-..| ...|.+ ++|++|+.||.|++||+.+ +.
T Consensus 264 -~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn-- 331 (406)
T KOG2919|consen 264 -KLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN-- 331 (406)
T ss_pred -eecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC--
Confidence 55555 45789999999987 367777777755 33334 445777 8999999999999999988 44
Q ss_pred eeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328 (358)
Q Consensus 297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 328 (358)
.+..+..+...++.++++|--+ ++|+++...
T Consensus 332 ~~sv~~~~sd~vNgvslnP~mp-ilatssGqr 362 (406)
T KOG2919|consen 332 EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQR 362 (406)
T ss_pred cccccccccccccceecCcccc-eeeeccCce
Confidence 3455667888899999999977 788776543
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.2e-22 Score=152.49 Aligned_cols=261 Identities=19% Similarity=0.304 Sum_probs=184.2
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEec-cCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEE-SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
.|.+.|+.++++.++. .+.+|+. .....-..-.+- ......+..+.|.+ ..-|+.+|+++.|+++.||
T Consensus 20 s~D~~GRRmAtCSsDq-----~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAh-----PEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQ-----TVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAH-----PEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred eecccCceeeeccCCC-----cEEEEeccCCCCceEEeeeE-EecCCcEEEEEecC-----ccccceEEEEecCCceeee
Confidence 5788999999998876 6666763 222222221111 12234455888863 3459999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCC-----
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAA----- 154 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~----- 154 (358)
.-...+. .....+......+......|+.+.|.|.. +-++|+++.||.+|||+.-.
T Consensus 89 EE~~~~~------------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 89 EEQEKSE------------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred eeccccc------------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 8642111 11224566677778888999999999862 45799999999999998643
Q ss_pred -Cceeeeec-------ccccceeeEEEcCCC--CcEEEEEeCC-----CcEEEEEcccCC----CccceeeecCCeeeEE
Q 018293 155 -GKCNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----HSGFKWAVAADVESLA 215 (358)
Q Consensus 155 -~~~~~~~~-------~~~~~v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~i~~~~ 215 (358)
..+..+++ .+..+..|+.|+|.. ..+|+.|+.+ +.++||...... ....+..+..+|+.++
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence 23333443 466788899999743 3567777755 478888876543 2334557889999999
Q ss_pred EcCCCC---CeEEEEecCCeEEEEEcccCCC--------CC---CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 216 WDPHAE---HSFVVSLEDGTIKGFDIRTAKS--------DP---DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 216 ~~~~~~---~~~~~~~~dg~i~i~d~~~~~~--------~~---~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
|.|+-+ .++++++.|| |+||.++.... .. .......+..+..|.++|..+.|+-.| ..|++.+.
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGd 308 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGD 308 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCC
Confidence 999643 4789999999 99999985321 00 011123445577899999999999988 89999999
Q ss_pred CCcEEEEecCCC
Q 018293 282 DKMVKLWDLSNN 293 (358)
Q Consensus 282 dg~i~i~d~~~~ 293 (358)
||.|++|...-.
T Consensus 309 DG~VRLWkany~ 320 (361)
T KOG2445|consen 309 DGCVRLWKANYN 320 (361)
T ss_pred Cceeeehhhhhh
Confidence 999999987643
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=1.4e-22 Score=160.00 Aligned_cols=221 Identities=19% Similarity=0.324 Sum_probs=177.0
Q ss_pred ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCc
Q 018293 117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189 (358)
Q Consensus 117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (358)
...||+++|..++|+|.+.+.||+|+.|.+|.||++-.+ +++..+.+|...|-.++|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 456899999999999998899999999999999998654 4567788999999999999998899999999999
Q ss_pred EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc-eeEEEe
Q 018293 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISY 268 (358)
Q Consensus 190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~ 268 (358)
|.+||+.+++.... ..|...|.++.|+.++ .++++.+.|..|+|||.+++ ..+..-.+|.+. -..+.|
T Consensus 156 v~iWnv~tgeali~-l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT-LDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred EEEEeccCCceeee-cCCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEE
Confidence 99999999987764 4499999999999955 59999999999999999998 556666667543 345567
Q ss_pred cCCCCcEEEEEe---CCCcEEEEecCCCC-ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 269 NPLVPNLLATGS---TDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 269 ~~~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
-.++ .++-||- .+..+.+||..+.+ +....++... +.|.---|.+|...++++|-.|+.|+-|.+.+.......
T Consensus 225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy 302 (472)
T KOG0303|consen 225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY 302 (472)
T ss_pred eccC-ceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence 7777 5555553 26779999987643 3444455443 446556688898877888889999999999988766555
Q ss_pred cccCcC
Q 018293 345 FSKYSK 350 (358)
Q Consensus 345 ~~~~~~ 350 (358)
+..+..
T Consensus 303 ln~f~S 308 (472)
T KOG0303|consen 303 LNTFSS 308 (472)
T ss_pred eccccc
Confidence 555543
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.6e-22 Score=152.80 Aligned_cols=291 Identities=13% Similarity=0.206 Sum_probs=203.8
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
++|++-|.+|++|+.++ .+.+|+..+...-.++..|..++ .|+.| |+||+.|+|++.|..|.+|
T Consensus 29 ~~Fs~~G~~lAvGc~nG-----~vvI~D~~T~~iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANG-----RVVIYDFDTFRIARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred EEeccCcceeeeeccCC-----cEEEEEccccchhhhhhccccce----eEEEe-------cCCCCEeeeecCCceeEEE
Confidence 36999999999999987 77777766644445555554333 35656 9999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|+..+..+..+. ...+|+...|+|...+..++.-.+..-.+-++..++.. .
T Consensus 93 Dl~~gs~l~rir----------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 93 DLLKGSPLKRIR----------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-V 143 (405)
T ss_pred eccCCCceeEEE----------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-e
Confidence 998776554332 56789999999987777777666666666666543211 1
Q ss_pred ec----c-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec-CCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293 161 LE----H-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTIK 234 (358)
Q Consensus 161 ~~----~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~dg~i~ 234 (358)
+. + ......+..|.+.| +++++|...|.+.++|..+.+.+....... ..|..+.++. .+..++..+.|..|+
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIR 221 (405)
T ss_pred ccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEE
Confidence 11 0 11122334678888 899999999999999999988776444443 6788888988 456899999999999
Q ss_pred EEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCCceeeEecCCCC-ceeEE
Q 018293 235 GFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKA-GAVFS 310 (358)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~v~~ 310 (358)
.|+++.-..........+.+.+.. ...+-.+++|+.+| .++++++ ....++||....+. .+..+.+.. .....
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l~D 298 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEELLD 298 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcc--eeeeecCCchhheee
Confidence 999984321100000111111111 12345788999988 6666655 45669999999998 455566655 56778
Q ss_pred EEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 311 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 311 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
+.|+|-.. ++++- ..|.+++|....-+....
T Consensus 299 V~whp~rp-~i~si-~sg~v~iw~~~~~enwsa 329 (405)
T KOG1273|consen 299 VNWHPVRP-IIASI-ASGVVYIWAVVQVENWSA 329 (405)
T ss_pred ccccccee-eeeec-cCCceEEEEeecccchhh
Confidence 99999988 46655 778999999876655443
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=5.7e-22 Score=150.63 Aligned_cols=256 Identities=20% Similarity=0.292 Sum_probs=190.0
Q ss_pred CCcccceeeecCCccccCCCceEEecCC----CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC
Q 018293 46 PAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 121 (358)
+.+.+.+.|.. + .....+||.|+. .+.|.|-.++..... ...... ..|
T Consensus 44 p~~lya~~Ws~---~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e-----------------------~~~~a~-fd~ 95 (364)
T KOG0290|consen 44 PWPLYAMNWSV---R-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE-----------------------LVEDAN-FDH 95 (364)
T ss_pred CCceeeecccc---C-CCcceeEEEeeeccccCCeeEEEEEccCCCc-----------------------eeccCC-CCC
Confidence 33444666632 2 234567888874 467777776521110 000011 358
Q ss_pred cccEEEEecCCCC----CcEEEEEEcCCeEEEEECCC--Cce--eee-----ecccccceeeEEEcCCCCcEEEEEeCCC
Q 018293 122 TDSVLGLAWNKEF----RNILASASADKQVKIWDVAA--GKC--NLT-----LEHHTDKVQAVAWNHHSPQILLSGSFDR 188 (358)
Q Consensus 122 ~~~v~~~~~~~~~----~~~l~s~~~dg~v~iwd~~~--~~~--~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (358)
.-+++.+.|.|+. ..+||+.+ -.+|+|.+.. .+. ... -..+..++++..|+.-.++++.+++-|-
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 9999999999983 23666654 4799999873 211 111 1246679999999998889999999999
Q ss_pred cEEEEEcccCCC---ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE
Q 018293 189 SVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 265 (358)
Q Consensus 189 ~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (358)
++.+||++++.. ...+..|...|..++|...+.+.|++.+.||.+++||+|.... ...++.-.....+...
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------STIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------STIIYEDPSPSTPLLR 247 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------ceEEecCCCCCCccee
Confidence 999999998733 3446689999999999997788999999999999999998743 1222222232567889
Q ss_pred EEecCCCCcEEEEEeCCC-cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 266 ISYNPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 266 i~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
++|++..++++++-..|. .|.|.|++.... .+..+.+|.+.|+.++|.|.....++++|.|..+.+||+..-
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999999889999877654 599999998753 677899999999999999987778999999999999999753
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7e-22 Score=164.00 Aligned_cols=303 Identities=18% Similarity=0.241 Sum_probs=215.0
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|...|.|..|+.|+.++ .+.+|+..++. . .........+.|++|.| .++-..||++-... +.|-
T Consensus 406 iSvdp~G~wlasGsdDG-----tvriWEi~TgR--c---vr~~~~d~~I~~vaw~P-----~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDG-----TVRIWEIATGR--C---VRTVQFDSEIRSVAWNP-----LSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred EEecCCcceeeecCCCC-----cEEEEEeecce--E---EEEEeecceeEEEEecC-----CCCceeEEEEecCc-eEEe
Confidence 45789999999997776 66666666541 1 22334555667999955 24455677666554 5555
Q ss_pred EcccccCcC---ceeecCCcccc------cccccccC-CceeccccccCCCcccEEEEecCCCCCcEEEEEEcC---CeE
Q 018293 81 DLDVIDEVQ---PHVILGGIDEE------KKKKKSKK-GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD---KQV 147 (358)
Q Consensus 81 ~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v 147 (358)
+-.-+..+. ....+....+. ...|.... .....-+.....|...|..+.|+.. +.+|++...+ ..|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceE
Confidence 543332111 11111111111 11222111 1111113344568999999999999 5688887664 469
Q ss_pred EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293 148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 227 (358)
Q Consensus 148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 227 (358)
.|+++...+...-|+...+.|.++.|+|.. .+|++++ ...|++||+...............|..++.+|.|. -+++|
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD-nli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD-NLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC-eEEEe
Confidence 999998877766776667889999999998 5555555 56899999998777666667777899999999655 68888
Q ss_pred ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC-------CCCceeeEe
Q 018293 228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-------NNQPSCIAS 300 (358)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~ 300 (358)
+.|+.+..||+.-. .++...+..|...+++++|++.- .++++|+.||++.||.-. +.....+..
T Consensus 626 s~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred cCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 89999999999876 47788889999999999999977 799999999999998532 233456677
Q ss_pred cCCCCce----eEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293 301 RNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW 333 (358)
Q Consensus 301 ~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~vw 333 (358)
+.+|... |..+.|+|...+ |.+++.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 7888655 889999999996 7788999999998
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=159.61 Aligned_cols=244 Identities=13% Similarity=0.181 Sum_probs=191.1
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++.|+|...+|++++.||.++||.++... ...+..+.-...+|.+..|.|+|...
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------N~~lqS~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------NPKLQSIHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCcc-------------------------ChhheeeeeccCccceeeecCCCceE
Confidence 34569999999999999999999997422 22233333356789999999997669
Q ss_pred EEEEEcCCeEEEEECCCCcee--eeecccc-cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 138 LASASADKQVKIWDVAAGKCN--LTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
+++++....+..||+++.+.. ....++. ..+.....++++ ++++..+..|.|.+....+++.+. ....++.+..+
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~ 350 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDF 350 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeE
Confidence 999999999999999988643 2333333 356677889999 899999999999999998888766 66788999999
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEEEEEeCCCcEEEEecCC-
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN- 292 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~- 292 (358)
+|+.++ ..+++++.+|.|.+||++.. .+++.+.... -.-++++.++++ .+||+|+..|.|.|||..+
T Consensus 351 ~fsSds-k~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 351 TFSSDS-KELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred EEecCC-cEEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchh
Confidence 999865 57888888999999999986 5555554321 123677888888 8999999999999999654
Q ss_pred ---CCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc--CCeEEEEEccCCCc
Q 018293 293 ---NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAG 340 (358)
Q Consensus 293 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~ 340 (358)
..|.++..+..-...|++++|+++.+ +||.++. +..+++-.+.+...
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceee
Confidence 34556777777778899999999999 6877764 56788888876543
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2e-22 Score=166.12 Aligned_cols=258 Identities=17% Similarity=0.214 Sum_probs=190.9
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
..|++....|++++.||+|.+|+++... ........+...+.+|.++|.|+++.++ +..+
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ 359 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHC 359 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEecccCceEEEEecCC-ceEE
Confidence 4468888999999999999999994310 1223556777889999999999999999 6799
Q ss_pred EEEEcCCeEEEEECCCC----------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-ee
Q 018293 139 ASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV 207 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~ 207 (358)
++|+.||+|+.|++-.. .....+.+|.+.++.+++++.. ..|++++.||+++.|+........... ..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e 438 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKE 438 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccc
Confidence 99999999999965411 2345678999999999999988 779999999999999987766622111 12
Q ss_pred cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------ecCCceeEEEecCCCCcEEEEEe
Q 018293 208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~ 280 (358)
.+....+.+-.......++...-+.--++++... .....+. .-...+..+.++|.. .+.+++.
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~---------s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h 508 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV---------SDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH 508 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhh---------hheeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence 2334555554422223333333333334444433 1111111 112457888999988 7999999
Q ss_pred CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293 281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350 (358)
Q Consensus 281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 350 (358)
.|+.|+++|..+++ .+.....|...++++++.|+|.+ |++++.|+.+++|.+....++.....++..
T Consensus 509 ed~~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~ 575 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKK 575 (577)
T ss_pred cCCceecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeecccccccc
Confidence 99999999999998 46677788999999999999996 889999999999999888877766666544
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=2.8e-21 Score=153.27 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=179.5
Q ss_pred cCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 62 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 62 s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
.+++. .||||+.|..|++|.++..+.... .........+..|..+|+++.|+|+ +.+||+
T Consensus 22 q~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLAS 82 (434)
T KOG1009|consen 22 QKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD-GELLAS 82 (434)
T ss_pred ccCcccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC-cCeeee
Confidence 45544 999999999999999986544321 1234455678889999999999999 679999
Q ss_pred EEcCCeEEEEECC--------C--------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293 141 ASADKQVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 204 (358)
Q Consensus 141 ~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 204 (358)
|+.+|.|.+|-.. + ......+.+|...|..++|+|++ .++++++.|..+++||+..+......
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec
Confidence 9999999999765 2 22345667899999999999999 89999999999999999999888877
Q ss_pred eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC---------------------------------------
Q 018293 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP--------------------------------------- 245 (358)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--------------------------------------- 245 (358)
..|...+..++|.|- .+++++-+.|...+.+.+.......
T Consensus 162 ~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP 240 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP 240 (434)
T ss_pred cccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC
Confidence 888888888888884 3456555555544444333211000
Q ss_pred ---------------------------CCCCCCccEEEeecCCceeEEEecCC-----------------CCcEEEEEeC
Q 018293 246 ---------------------------DSTSQQSSFTLHAHDKAVCTISYNPL-----------------VPNLLATGST 281 (358)
Q Consensus 246 ---------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~-----------------~~~~l~~~~~ 281 (358)
.....++...+.....+...+.++|- ....++.++
T Consensus 241 dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt- 319 (434)
T KOG1009|consen 241 DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT- 319 (434)
T ss_pred CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence 00001122222222333444444431 102344444
Q ss_pred CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
...|++||.++..|.... ..-|-..|+.++|+++|.. ++..+.||...+-.++..+.-
T Consensus 320 ~~svyvydtq~~~P~~~v-~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVV-DNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEeccccccceEEE-eeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcchhcc
Confidence 567999999988875543 3457788999999999995 777899998888777765543
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.1e-20 Score=159.32 Aligned_cols=286 Identities=19% Similarity=0.215 Sum_probs=211.9
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCC----CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 77 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 77 (358)
.++|+++.+++-+..+ ..+.|...+. .++-+-.|-+ . +..+.| +|.|++|++.+.|-+-
T Consensus 323 lw~~n~~~ii~~g~~G-----g~hlWkt~d~~~w~~~~~iSGH~~-~----V~dv~W-------~psGeflLsvs~DQTT 385 (764)
T KOG1063|consen 323 LWSPNSNVIIAHGRTG-----GFHLWKTKDKTFWTQEPVISGHVD-G----VKDVDW-------DPSGEFLLSVSLDQTT 385 (764)
T ss_pred EEcCCCCEEEEecccC-----cEEEEeccCccceeeccccccccc-c----ceeeee-------cCCCCEEEEeccccce
Confidence 4789999998887776 6677774332 1112222222 1 225666 8999999999999999
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC---
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--- 154 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--- 154 (358)
||+---..+ ........-+-|...++|++|-+. ...+++|.....+|+|+...
T Consensus 386 RlFa~wg~q-----------------------~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 386 RLFARWGRQ-----------------------QEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred eeecccccc-----------------------cceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHH
Confidence 998654111 112223334458889999999886 56889999999999997530
Q ss_pred ----------------------------------------Cce---------------------------------eeee
Q 018293 155 ----------------------------------------GKC---------------------------------NLTL 161 (358)
Q Consensus 155 ----------------------------------------~~~---------------------------------~~~~ 161 (358)
|.. ++.+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 000 0023
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 236 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~ 236 (358)
.+|...|++++.+|++ +++++++.. ..|++|+..+-........|.-.|+.++|+|+ +.+|++.+.|.++.+|
T Consensus 522 YGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd-g~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD-GRYLLSVSRDRTVSLY 599 (764)
T ss_pred ccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC-CcEEEEeecCceEEee
Confidence 3688899999999999 899998764 35899999887777777889999999999995 5689999999999999
Q ss_pred EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--CceeeEecCCCCceeEEEEEc
Q 018293 237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~ 314 (358)
......... ........|..-|.+..|+|++ .+++|++.|++|++|..... +.........+...|+.+++.
T Consensus 600 ~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 600 EVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eeecccchh-----hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 986542211 1233377899999999999998 88999999999999999887 433333445677889999998
Q ss_pred CC----CCeEEEEEccCCeEEEEEcc
Q 018293 315 ED----SPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 315 ~~----~~~~l~~~~~dg~i~vw~~~ 336 (358)
|- ..++++.|-..|.|.+|...
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccccccccceEEEEecccEEEEEecc
Confidence 73 33478889999999999966
No 167
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=7.1e-21 Score=160.56 Aligned_cols=288 Identities=13% Similarity=0.200 Sum_probs=210.1
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeece--eecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
..+|.+..|++++.+. .+-+|...+.. -++...- ..+... ...+. ..-|+|+++.+++-+..|-.++
T Consensus 274 ~W~p~~~~LLSASaDk-----smiiW~pd~~t--GiWv~~vRlGe~gg~--a~GF~--g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 274 WWHPEGLDLLSASADK-----SMIIWKPDENT--GIWVDVVRLGEVGGS--AGGFW--GGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred EEccchhhheecccCc-----ceEEEecCCcc--ceEEEEEEeeccccc--cccee--eEEEcCCCCEEEEecccCcEEE
Confidence 4678888888887876 66677765420 1221110 001100 11111 2235899999999999999999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---- 155 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---- 155 (358)
|..... ..........||.+.|.+++|.|. +.+|++.+.|-+-|++-.-..
T Consensus 343 Wkt~d~------------------------~~w~~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~w 397 (764)
T KOG1063|consen 343 WKTKDK------------------------TFWTQEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEW 397 (764)
T ss_pred EeccCc------------------------cceeeccccccccccceeeeecCC-CCEEEEeccccceeeecccccccce
Confidence 993211 123333345689999999999999 669999999999999875411
Q ss_pred ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc--------------------------------------
Q 018293 156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-------------------------------------- 197 (358)
Q Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------------- 197 (358)
..+.+-+-|...++|++|-+.. ..+++|.....+++|+.-.
T Consensus 398 HEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 398 HEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 2233445688889999998864 6789999888899987420
Q ss_pred -----CCC---------------------------------ccceeeecCCeeeEEEcCCCCCeEEEEecCC-----eEE
Q 018293 198 -----STH---------------------------------SGFKWAVAADVESLAWDPHAEHSFVVSLEDG-----TIK 234 (358)
Q Consensus 198 -----~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----~i~ 234 (358)
+.. ...+.+|...|.+++.+|+ ++++++++... .|+
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~ 555 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIR 555 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEE
Confidence 000 0002345567999999994 56888887543 589
Q ss_pred EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce--eeEecCCCCceeEEEE
Q 018293 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAGAVFSVA 312 (358)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~ 312 (358)
+|+..+. .....+..|.-.|+.++|+||+ ++|++.+.|.++.+|........ .......|..-|.++.
T Consensus 556 lw~t~~W---------~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 556 LWNTANW---------LQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred EEeccch---------hhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 9999887 6677899999999999999999 99999999999999998654321 1223678999999999
Q ss_pred EcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 313 FSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 313 ~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
|+|++.+ ++|++.|.+|++|.....
T Consensus 626 W~pde~~-FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 626 WSPDEKY-FATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCcccce-eEEecCCceEEEEeccCc
Confidence 9999997 999999999999999887
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.8e-22 Score=162.29 Aligned_cols=234 Identities=23% Similarity=0.317 Sum_probs=176.2
Q ss_pred eccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee-cccccceeeEEEcCC-CCcEEEEEeCCCc
Q 018293 112 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHH-SPQILLSGSFDRS 189 (358)
Q Consensus 112 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~~~~~dg~ 189 (358)
......+.||++.|+|++|+.+ +.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|. ++.++++|..|..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred cchhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 3445578899999999999999 679999999999999999988888877 589999999999984 3468889999999
Q ss_pred EEEEEcccCC----------CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCC-CCCccEEEee
Q 018293 190 VVMKDARIST----------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSFTLHA 258 (358)
Q Consensus 190 i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 258 (358)
|+++|+...+ .......|...|..++-.|++++.+.++++||+++-||++......... ....+..+..
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 9999998532 2222335677888999999888999999999999999999864322111 1111222222
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----------------eeeEec-CCCC-----------ceeEE
Q 018293 259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA-----------GAVFS 310 (358)
Q Consensus 259 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~-~~~~-----------~~v~~ 310 (358)
.--...++.++|..+.+|++|+.|-..++||.+...+ .++..+ .+|. ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 3345688999999989999999999999999543110 012211 1221 12567
Q ss_pred EEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 311 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 311 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
+.|+|+|..+|++-+.+ .|+++|+..++.....+..
T Consensus 279 vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred EEECCCCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence 89999999888766654 7999999998888776666
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=8.3e-21 Score=144.26 Aligned_cols=238 Identities=23% Similarity=0.336 Sum_probs=178.7
Q ss_pred CceEEecC----CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 65 GNFMAVGS----MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 65 ~~~l~~g~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
.-.+++|. .|+.|.+.+++.....- ....+..|.+.|..|+-+|.+..+|++
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l------------------------~skvf~h~agEvw~las~P~d~~ilaT 81 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSEL------------------------LSKVFFHHAGEVWDLASSPFDQRILAT 81 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchh------------------------hhhhhhcCCcceehhhcCCCCCceEEE
Confidence 33455554 36788888876533221 223455688999999999997888888
Q ss_pred EEcC-------CeEEEEECCCC---------ceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293 141 ASAD-------KQVKIWDVAAG---------KCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 203 (358)
Q Consensus 141 ~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 203 (358)
+..+ ..+.||.+... +++..+. .+-+.|.|+.|.|++ ..+++.. |..|.+|++.....+..
T Consensus 82 ~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~va 159 (370)
T KOG1007|consen 82 VYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVA 159 (370)
T ss_pred EEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchhe
Confidence 7653 24779988532 2333443 344689999999988 5566555 89999999987765321
Q ss_pred ------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293 204 ------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277 (358)
Q Consensus 204 ------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 277 (358)
...+....++-+|+|......+....|+++..||+|+.+ +....-.+|...+..+.|+|+...+|+
T Consensus 160 ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~--------~~~sI~dAHgq~vrdlDfNpnkq~~lv 231 (370)
T KOG1007|consen 160 EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK--------KNNSIEDAHGQRVRDLDFNPNKQHILV 231 (370)
T ss_pred eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh--------hhcchhhhhcceeeeccCCCCceEEEE
Confidence 112455678889999433344555579999999999872 333344678888999999999888999
Q ss_pred EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
+|+.||.|++||.+..+. +++++.+|...|+++.|+|....++.+|+.|..|.+|...+
T Consensus 232 t~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EcCCCccEEEEeccCCCc-cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 999999999999998764 78899999999999999998877999999999999998764
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.4e-21 Score=162.23 Aligned_cols=231 Identities=19% Similarity=0.283 Sum_probs=178.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+|.|.+||+|+.||+|+||.+.++.++.... ..+.|.|++|+|.+..-+++.
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe----------------------------ecceeEEEEecCCCCceeEEE
Confidence 7889999999999999999999988877543 345899999999865555555
Q ss_pred EcCCeEEEEECCCCc-------------------------------------eeeeecccccceeeEEEcCCCCcEEEEE
Q 018293 142 SADKQVKIWDVAAGK-------------------------------------CNLTLEHHTDKVQAVAWNHHSPQILLSG 184 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (358)
.....+.|-+..-|. -++..-.|...|..+.|+..| .+|++.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 554445555432110 011122377889999999999 788887
Q ss_pred eCC---CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC
Q 018293 185 SFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 261 (358)
Q Consensus 185 ~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 261 (358)
..+ ..|.|+++........+....+.+.++.|+|... +|++++ ...|++||+..+ ..+..+.....
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k 608 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK 608 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence 653 4689999987766665566778899999999655 555554 467999999876 66666766777
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 262 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 262 ~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.|.+++++|.| .-|+.|+.|+.+..||+.-... ....+..|...+++++|++.-. ++++|+.||++.|+.-
T Consensus 609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEee
Confidence 89999999988 6788899999999999986642 4566778999999999999998 7999999999998753
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.2e-20 Score=149.33 Aligned_cols=214 Identities=21% Similarity=0.315 Sum_probs=164.6
Q ss_pred CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293 46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 125 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 125 (358)
....+.+.|.|+ +...+|+|+.|.+|.||++........ ...++..+.+|...|
T Consensus 81 t~~vLDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrV 134 (472)
T KOG0303|consen 81 TAPVLDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRV 134 (472)
T ss_pred cccccccccCcc------CCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeE
Confidence 445568888664 677899999999999999975443332 235566788999999
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
.-++|+|...+.|++++.|.+|.+||+.+++.+.++. |.+.|+++.|+.+| .++++.+.|..|++||.++++......
T Consensus 135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecc
Confidence 9999999988999999999999999999999988888 99999999999999 899999999999999999998876554
Q ss_pred eecC-CeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 206 AVAA-DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 206 ~~~~-~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
.|.+ ....+.|-.++. ++.+|. .+..+.+||..+... ......+. ..+.|.---+.|+..-+.++|-.
T Consensus 213 ~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------P~~~~elD-tSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------PIALQELD-TSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred cccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------cceeEEec-cCCceEEeeecCCCCEEEEEecC
Confidence 5543 355566666444 555553 467899999887632 11122222 24456666678877344456667
Q ss_pred CCcEEEEecCCCCc
Q 018293 282 DKMVKLWDLSNNQP 295 (358)
Q Consensus 282 dg~i~i~d~~~~~~ 295 (358)
|+.|+-|.+....+
T Consensus 285 D~~IRYyEit~d~P 298 (472)
T KOG0303|consen 285 DSSIRYFEITNEPP 298 (472)
T ss_pred CcceEEEEecCCCc
Confidence 99999999987764
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.5e-20 Score=164.40 Aligned_cols=302 Identities=18% Similarity=0.278 Sum_probs=200.1
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+.|+|=.+.++++...+ .+.+|+...+...+-+.. ....+..+..+..++ ..|..++++|+.||.|+||
T Consensus 1070 ~~~hpf~p~i~~ad~r~-----~i~vwd~e~~~~l~~F~n-~~~~~t~Vs~l~liN-----e~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRE-----RIRVWDWEKGRLLNGFDN-GAFPDTRVSDLELIN-----EQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred eeecCCCceeEEcCCcc-----eEEEEecccCceeccccC-CCCCCCccceeeeec-----ccchhheeeeccCceEEEe
Confidence 45788888998884332 556666555432222222 223344455666665 3677899999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
+-.......+..+.+ + ..+.-.+.+-.+.=.-++|.-..+.++ +++.-..|+|||....++...
T Consensus 1139 k~y~~~~~~~eLVTa-w--------------~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTA-W--------------SSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred cccccccCCceeEEe-e--------------ccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEee
Confidence 854221111110000 0 000001111122225567887756455 444578999999998877776
Q ss_pred ec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC---ccceeeecCC--eeeEEEcCCCCCeEEEEecCCeEE
Q 018293 161 LE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLEDGTIK 234 (358)
Q Consensus 161 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~dg~i~ 234 (358)
+. +....++++.-+-..++++++|..||.|++||.+.... +.....|... |..+.+.+.+-..+++|+.+|.|+
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 64 33456777766554458999999999999999987644 2334455555 999999997766799999999999
Q ss_pred EEEcccCCCCCCCCCCCccEEEeecC--C-ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec----CCCCce
Q 018293 235 GFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NPKAGA 307 (358)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~~~~~~~--~-~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~ 307 (358)
+||+|.... .....+..|. + ..+++..++.. ..+++|+. +.|+||++...+....... ....+.
T Consensus 1283 ~~DlR~~~~-------e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1283 LLDLRMSSK-------ETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred EEecccCcc-------cccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccCcCCC
Confidence 999998521 2223333332 3 58999999987 78999987 9999999977653222211 123456
Q ss_pred eEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 308 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 308 v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
+.+++|+|-.- ++|+|+.|.+|.||...+..
T Consensus 1354 ~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1354 VSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence 89999999987 68999999999999887654
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.2e-21 Score=148.13 Aligned_cols=198 Identities=18% Similarity=0.264 Sum_probs=157.0
Q ss_pred cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCC-CCcEEEEEeCCCcEEEEEcccCCCccce-eeec--CCe
Q 018293 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-WAVA--ADV 211 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~--~~i 211 (358)
..+|++...|.|++||..+++.+..+++++..+..++|... ++..+.+++.||+|++||+|........ +... .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 47889999999999999999999999999999999999774 6688999999999999999987654422 2222 356
Q ss_pred eeEEEcCCCCCeEEEEec----CCeEEEEEcccCCCCCCCCCCCcc-EEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293 212 ESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 286 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 286 (358)
.+++... ..+++++|+. +-.|.+||+|..+ +++ .-...|...|++++|+|..+++|++|+.||.|.
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q--------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ--------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEecccc--------chhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 6666654 4557888753 6789999999873 323 334679999999999999999999999999999
Q ss_pred EEecCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 287 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 287 i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
+||+..... ..+...-.|...|.++.|+.++-..+.+-+..++..+|+++.+.+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 999976431 12333445677899999999882236678889999999999887543
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=138.09 Aligned_cols=245 Identities=17% Similarity=0.230 Sum_probs=174.0
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
+++|.+++|++|+.+|.|.+..+.+...-.. .......+...++|.++|+.++|..+ +|+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------------~~~gk~~iv~eqahdgpiy~~~f~d~---~Ll 76 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------------EPPGKLKIVPEQAHDGPIYYLAFHDD---FLL 76 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhcccc-----------------CCCCCcceeeccccCCCeeeeeeehh---hee
Confidence 4589999999999999999999875332211 11222333445789999999999943 676
Q ss_pred EEEcCCeEEEEECCCCce------eeee--ccc-----ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293 140 SASADKQVKIWDVAAGKC------NLTL--EHH-----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 206 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 206 (358)
+|+ ||.|+-|..+.... +.+. ..| --.|+++-..|.. +-++.++.|+.++-||+++++......+
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence 766 49999998754321 1111 112 2368889999988 4455666899999999999999988899
Q ss_pred ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
|...+.++.-... ...+++|++||++++||.++++........+....+..| ...|-+++-+. .+|++|+ ...+
T Consensus 155 HtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~l 229 (325)
T KOG0649|consen 155 HTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKL 229 (325)
T ss_pred Ccceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCce
Confidence 9999999988543 347999999999999999998543322222222223333 23466676664 6777766 4679
Q ss_pred EEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.+|.++..++.+++.+.+| +..+.|..+ .+++++..+.+.-|.+..
T Consensus 230 slwhLrsse~t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEeccCCCceEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence 9999999998888877754 777788776 466677777888887753
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=4.8e-18 Score=143.12 Aligned_cols=243 Identities=10% Similarity=0.094 Sum_probs=151.8
Q ss_pred cccCCCceEEecC-CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 60 KDREKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 60 ~~s~~~~~l~~g~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
.++|++++|++++ .++.|.+|+++....+... ... ........++|+|++. ++
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~------------------------~~~-~~~~~p~~i~~~~~g~-~l 94 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFA------------------------AES-PLPGSPTHISTDHQGR-FL 94 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEe------------------------eee-cCCCCceEEEECCCCC-EE
Confidence 4589999887664 5789999998621111100 000 1223467899999954 55
Q ss_pred EEEE-cCCeEEEEECCC-Cc---eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc------eeee
Q 018293 139 ASAS-ADKQVKIWDVAA-GK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF------KWAV 207 (358)
Q Consensus 139 ~s~~-~dg~v~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~ 207 (358)
++++ .++.|.+|++++ +. .+..+. +.....+++++|++..++++...++.|.+||+.+...... ....
T Consensus 95 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 95 FSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 5554 589999999964 32 222232 2344677899999944445666779999999976432210 1122
Q ss_pred cCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeec------CCceeEEEecCCCCcEEEEEe
Q 018293 208 AADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~ 280 (358)
......++|+|++. ++++.. .++.|.+||+...... ......+..+ ......+.++|++ ++++++.
T Consensus 174 g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~ 246 (330)
T PRK11028 174 GAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACD 246 (330)
T ss_pred CCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEec
Confidence 34567899999665 555554 4899999999743110 0122222211 1223468899998 7777764
Q ss_pred -CCCcEEEEecCCCCc--eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 281 -TDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 281 -~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.++.|.+|++..... ..+..... ......+.++|+|++++++...+++|.+|++..
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 478899999965431 11111111 123457899999998777666789999998853
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.5e-20 Score=156.19 Aligned_cols=215 Identities=18% Similarity=0.304 Sum_probs=158.8
Q ss_pred CcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293 47 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 126 (358)
Q Consensus 47 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 126 (358)
..+..+.|-|+ |..+||+++.||.|++|.+..+..... ...+...+..|...|+
T Consensus 628 t~vtDl~WdPF------D~~rLAVa~ddg~i~lWr~~a~gl~e~--------------------~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 628 TLVTDLHWDPF------DDERLAVATDDGQINLWRLTANGLPEN--------------------EMTPEKILTIHGEKIT 681 (1012)
T ss_pred ceeeecccCCC------ChHHeeecccCceEEEEEeccCCCCcc--------------------cCCcceeeecccceEE
Confidence 34557888665 678999999999999999987654442 3444557778999999
Q ss_pred EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293 127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 206 (358)
Q Consensus 127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 206 (358)
.+.|+|-....|++++.|-+|++||+.+++....+.+|.+.|..++|+|+| +.+++.+.||+|++|+.+..+.......
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCC
Confidence 999999878899999999999999999999999999999999999999999 8999999999999999988765432221
Q ss_pred --ecCCeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEEEEEe
Q 018293 207 --VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 207 --~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~ 280 (358)
....--.+.|.-++..++++|- ....|.+||..+... .++....-.. ..+.--.+.+|..-++++|-
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-------RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-------CcceeeeecccCccccccccCCCceEEEecC
Confidence 1233445777776654444442 235688898876532 2222221111 11122234556656888998
Q ss_pred CCCcEEEEecCCCCc
Q 018293 281 TDKMVKLWDLSNNQP 295 (358)
Q Consensus 281 ~dg~i~i~d~~~~~~ 295 (358)
.|..|.+|.+-...+
T Consensus 834 GD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 834 GDRFVNMYEVIYESP 848 (1012)
T ss_pred CCceEEEEEecCCCc
Confidence 999999999876654
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5.8e-20 Score=142.06 Aligned_cols=217 Identities=17% Similarity=0.295 Sum_probs=166.7
Q ss_pred CCcccEEEEecCCC---CCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 120 SHTDSVLGLAWNKE---FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 120 ~h~~~v~~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
.|......++|+-+ +..++|+|+.-|.|+|.|+.++++...+.+|...|+.+.++|+.++++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 37777888888643 345899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccee---eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC------------C---CC---CCCccE-
Q 018293 197 ISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP------------D---ST---SQQSSF- 254 (358)
Q Consensus 197 ~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~------------~---~~---~~~~~~- 254 (358)
+..++.... +|...|.++.|++++. ++++++.|.++++|++...+... . .+ ..-+.+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 998876543 5788999999999765 99999999999999998432100 0 00 001111
Q ss_pred EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCc-----------eeeEecCCCCceeEEEEE--cCCCCeE
Q 018293 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQP-----------SCIASRNPKAGAVFSVAF--SEDSPFV 320 (358)
Q Consensus 255 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-----------~~~~~~~~~~~~v~~~~~--~~~~~~~ 320 (358)
+...|...|-|+.|- | +++++-+-++.|..|.... .+. ....++.-....|+-+.| .|-++ +
T Consensus 246 t~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~ 321 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M 321 (385)
T ss_pred ccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence 335678888888888 3 7899988899999998721 110 112233333445665544 55567 6
Q ss_pred EEEEccCCeEEEEEccCCCcc
Q 018293 321 LAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 321 l~~~~~dg~i~vw~~~~~~~~ 341 (358)
||.|...|.|.+||+.+.+..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred HhhccCCCcEEEEECCCCCCc
Confidence 999999999999999987774
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=1.6e-18 Score=136.29 Aligned_cols=231 Identities=18% Similarity=0.232 Sum_probs=170.2
Q ss_pred ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
|+.+...|..|+.||. ++|+.+..+... ........|--+-|+.. ++|.
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---------------------------~~~~~~~~IvEmLFSSS---Lvai 61 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFEKCF---------------------------SKDTEGVSIVEMLFSSS---LVAI 61 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchHHhh---------------------------cccCCCeEEEEeecccc---eeEE
Confidence 4888999999999984 578776433211 11112334666667754 6666
Q ss_pred EEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee---cCCeeeEE
Q 018293 141 ASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLA 215 (358)
Q Consensus 141 ~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~ 215 (358)
.+.+. .+++++.+.+..+..+. ...+|.++.++.+. |+++-++ .|+|||+++.+.+...... ...+.+++
T Consensus 62 V~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~R---LvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 62 VSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKR---LVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccce---EEEEEcc-cEEEEecccceeehhhhccCCCccceEeec
Confidence 66554 49999999888887776 56789999998753 5555544 3999999998876544333 33455555
Q ss_pred EcCCCCCeEEE--EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc-EEEEecCC
Q 018293 216 WDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSN 292 (358)
Q Consensus 216 ~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~d~~~ 292 (358)
.++. +.+++. ....|.|.+||..+. ++...+..|.+++.+++|+++| .+|||+++.|+ ||||.+.+
T Consensus 137 ~n~~-n~ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 137 PNNA-NCYLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred cCCC-CceEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC
Confidence 5542 334554 235689999999987 8888999999999999999999 99999999998 79999999
Q ss_pred CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 293 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
++....+........|.+++|+|++++ |++.+..++|++|.+....
T Consensus 206 G~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence 985443333334567899999999995 8888889999999997654
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=8.3e-20 Score=153.11 Aligned_cols=258 Identities=16% Similarity=0.239 Sum_probs=187.6
Q ss_pred ccCCCceEEe--cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 61 DREKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 61 ~s~~~~~l~~--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
|..+..++|+ .+.-|.|-||+++....+..- ..-.+ -....|+.+.|.|-+...|
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDg----------------------v~p~l-~Ngt~vtDl~WdPFD~~rL 643 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG----------------------VMPGL-FNGTLVTDLHWDPFDDERL 643 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcc----------------------ccccc-ccCceeeecccCCCChHHe
Confidence 4456666664 455789999999854333211 11111 1446799999999888899
Q ss_pred EEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCe
Q 018293 139 ASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV 211 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 211 (358)
|.++.||.|++|.+..+ ++...+..|...|+++.|+|--...|++++.|.+|++||+++.+....+.+|...|
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI 723 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI 723 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence 99999999999998754 34566788999999999999777899999999999999999999888889999999
Q ss_pred eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCC----cEE
Q 018293 212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDK----MVK 286 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg----~i~ 286 (358)
..++|+|+ ++.+++.+.||+|++|+.++.. ++++.-.+. ...-..|.|.-+| +++++.+.|. .|.
T Consensus 724 f~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e--------~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 724 FGIAWSPD-GRRIATVCKDGTLRVYEPRSRE--------QPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred eEEEECCC-CcceeeeecCceEEEeCCCCCC--------CccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhh
Confidence 99999995 5589999999999999999873 344433222 1223467788888 6776666554 588
Q ss_pred EEecCCCC--ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCCC
Q 018293 287 LWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 352 (358)
Q Consensus 287 i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 352 (358)
+||.++.. ++....+....+ +.--.+.+|...++++|-.|..|.+|++.......-.+.++..+.
T Consensus 794 ~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~ 860 (1012)
T KOG1445|consen 794 MYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPV 860 (1012)
T ss_pred hhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCC
Confidence 88887643 222222221111 111235567777899999999999999987776655555554443
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=6.9e-18 Score=147.82 Aligned_cols=285 Identities=26% Similarity=0.443 Sum_probs=200.1
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCC-C-CceEeeceeecCCcccceeeecCCccccCCCc-eEEecCC-CCeE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGG-D-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSM-EPAI 77 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~-dg~i 77 (358)
.+.+.+..++.+..++ .+.+|+..... . ..+...+. .....+. .. ++++. +++..+. |+.+
T Consensus 72 ~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 72 AFSPDGELLLSGSSDG-----TIKLWDLDNGEKLIKSLEGLHD----SSVSKLA-----LS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred EECCCCcEEEEecCCC-----cEEEEEcCCCceeEEEEeccCC----CceeeEE-----EE-CCCcceEEeccCCCCccE
Confidence 4677888888886555 66677766542 1 11111111 0111111 12 45666 5555444 9999
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc-CCeEEEEECCCCc
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAAGK 156 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~ 156 (358)
.+|+... .......+..|...|.+++|+|+ +..+++++. |+.+++|++..+.
T Consensus 137 ~~~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 137 KLWDLST--------------------------PGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred EEEEecC--------------------------CCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCc
Confidence 9999974 01223345579999999999999 447888875 9999999999988
Q ss_pred eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235 (358)
Q Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 235 (358)
.+..+..|...+.+++|+|++...+++++.|+.+++||...+.... ....+.... ...|+|++ ..+++++.|+.+++
T Consensus 190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~ 267 (466)
T COG2319 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRL 267 (466)
T ss_pred eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEE
Confidence 8889988999999999999884255555999999999888554444 234444443 33899966 67889999999999
Q ss_pred EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315 (358)
Q Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 315 (358)
|+.+... .....+..|...+.++.|.|++ ..+++++.|+.+.+||..+...........|...+..+.|.+
T Consensus 268 ~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
T COG2319 268 WDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338 (466)
T ss_pred eeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence 9999762 2233336778999999999976 666668888889999988876433332246777799999943
Q ss_pred CCCeEEEEEccCCeEEEEEccCCC
Q 018293 316 DSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
++..++..+..|+.+.+|++....
T Consensus 339 ~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 339 DGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCEEEEeecCCCcEEeeecCCCc
Confidence 324444444688999999998776
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=141.70 Aligned_cols=253 Identities=16% Similarity=0.234 Sum_probs=183.9
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceecccc-ccCCCcccEEEEecCCCCCc
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKY-KKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~ 136 (358)
++.||.++++||+|+.|..+++|+++..-.. +..+++. .-..|...|.|++|... ..
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---------------------k~~KPI~~~~~~H~SNIF~L~F~~~-N~ 118 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVR---------------------KTPKPIGVMEHPHRSNIFSLEFDLE-NR 118 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhh---------------------cCCCCceeccCccccceEEEEEccC-Ce
Confidence 3456999999999999999999998631100 1111111 22357789999999987 67
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccce--eeecCCe
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFK--WAVAADV 211 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--~~~~~~i 211 (358)
.+++|..+++|...|+++.+.+..+.. ..+.|+.+..+|.. +.|++.+.++.|.+||.+.... .... .......
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 999999999999999999988777752 23489999999997 8999999999999999997763 2211 2234567
Q ss_pred eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC----------C-------------------CCCCCc--cEEEe---
Q 018293 212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP----------D-------------------STSQQS--SFTLH--- 257 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~----------~-------------------~~~~~~--~~~~~--- 257 (358)
..+.|+|..+.++++.+..+-+.+||.+...... . .....+ .+.+.
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 8899999989999999999999999998764300 0 000000 11111
Q ss_pred ------ecC-------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc---------------------eeeEecCC
Q 018293 258 ------AHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP---------------------SCIASRNP 303 (358)
Q Consensus 258 ------~~~-------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------~~~~~~~~ 303 (358)
.|. ..+.+++|.-+ ..+++|+.+-.|++|.+..... .....+.+
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 111 13455666644 4689999999999999853110 12345678
Q ss_pred CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
|...++.+.|+|... +|++.+-...+++|.-.
T Consensus 356 HRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccccccceeecCCcc-eEeccchhhheeccccc
Confidence 999999999999887 79999999999999754
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.8e-19 Score=153.46 Aligned_cols=259 Identities=19% Similarity=0.226 Sum_probs=185.7
Q ss_pred CcccCCCcEEEEE-EecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293 1 MTINPNDAVIVCA-RNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 77 (358)
Q Consensus 1 l~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 77 (358)
+.|+|..+.+++| ..++ +|.+|+...+.. +.....+....+...+.+.|+. ++.+.-+++++.||.|
T Consensus 248 ~~f~p~~p~ll~gG~y~G-----qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-----~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 248 LKFCPFDPNLLAGGCYNG-----QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-----NEHNTEFFSLSSDGSI 317 (555)
T ss_pred EEeccCCcceEEeeccCc-----eEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-----cCCCCceEEEecCCcE
Confidence 3578865555555 4555 888888877655 4444455556677777888976 4445678888899999
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK- 156 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~- 156 (358)
..|+++............. .........-...+++++|.+...+.++.|+.+|.|.--+-...+
T Consensus 318 ~~W~~~~l~~P~e~~~~~~---------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLES---------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred eeeeccccccchhhccccc---------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 9998764333221111110 000001112335689999999888899999999998874433221
Q ss_pred -------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc-cCCCccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293 157 -------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 228 (358)
Q Consensus 157 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 228 (358)
....+..|.++|+++.++|-+..++++++ |-++++|... ...++.........+++++|+|.....|+++.
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 13355678899999999999977777777 9999999988 44444444455666999999999888999999
Q ss_pred cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
.||.+.+||+..... .++.+...+....+.+.|++.| .+|++|...|.+.+|++...
T Consensus 462 ~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCCceehhhhhcccc-------CCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence 999999999987654 4555555556777888899888 89999999999999999643
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=9.7e-21 Score=163.07 Aligned_cols=239 Identities=23% Similarity=0.359 Sum_probs=182.6
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++.|...|.++++|+.|..++||..++..+.. ...||.+.|+.++.+.+ ..+
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------------s~rGhs~ditdlavs~~-n~~ 246 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETARCLA---------------------------SCRGHSGDITDLAVSSN-NTM 246 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccchhhhc---------------------------cCCCCccccchhccchh-hhh
Confidence 34568899999999999999999987655544 45689999999999988 679
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc----eeeecC----
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KWAVAA---- 209 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~---- 209 (358)
+++++.|..|++|.+.++.++..+.+|++.|++++|+|-- +.+.||++++||.+-.-.... ......
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 9999999999999999999999999999999999999843 788899999999871110000 000001
Q ss_pred ----------------------CeeeEEEcC----------CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe
Q 018293 210 ----------------------DVESLAWDP----------HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 257 (358)
Q Consensus 210 ----------------------~i~~~~~~~----------~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 257 (358)
...+++|.. +...+.++.-.+-.+++|++.++ ...+.+.
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ 392 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLM 392 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhc
Confidence 111222222 11122333334556778888776 7778888
Q ss_pred ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 258 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
+|...+..+.++|.++....+++.||...|||+-.+.++.... .+| +.+...+|+++|.. ++....-|.++|.....
T Consensus 393 ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 393 GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQ 469 (1113)
T ss_pred ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCC
Confidence 9999999999999888888899999999999999998766665 444 56778899999995 66677778999988765
Q ss_pred CCcc
Q 018293 338 DAGI 341 (358)
Q Consensus 338 ~~~~ 341 (358)
++..
T Consensus 470 s~s~ 473 (1113)
T KOG0644|consen 470 SKSQ 473 (1113)
T ss_pred Cccc
Confidence 5543
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=5.1e-19 Score=145.54 Aligned_cols=213 Identities=19% Similarity=0.307 Sum_probs=165.6
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
.+.|+.++.||.+.|.+-. .+.......|.++|.+-.|+|+ +.-|++++.|
T Consensus 75 ~d~~~i~s~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GED 125 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPD-GAGLLTAGED 125 (737)
T ss_pred cceEEEEcCCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCC-CceeeeecCC
Confidence 4568888899999887743 3334455679999999999999 5688999999
Q ss_pred CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293 145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 224 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (358)
|.|++|. ++|-+..++.....+|+|++|.|+.+..+++. .+.+.+=.+.....+.....|.+-|.++.|++. .+++
T Consensus 126 G~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-s~lI 201 (737)
T KOG1524|consen 126 GVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-SNII 201 (737)
T ss_pred ceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcc-ccce
Confidence 9999999 66766666666778999999999996666554 456666666666666656789999999999995 5699
Q ss_pred EEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC
Q 018293 225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK 304 (358)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 304 (358)
++|++|-..++||-.. ..++.-..|..+|++++|+|+ ..++.++. .+++ .-...
T Consensus 202 ~sgGED~kfKvWD~~G----------~~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R-------------~~~p~ 255 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQG----------ANLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTAR-------------FSSPR 255 (737)
T ss_pred eecCCceeEEeecccC----------cccccCChhccceeeeeeccc--cceeeeee-eeee-------------ecCCC
Confidence 9999999999999874 677788889999999999997 45565553 2333 12234
Q ss_pred CceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.+.|..++||+||.. +++|+..|.+.+=.+-.
T Consensus 256 ~GSifnlsWS~DGTQ-~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQ-ATCGTSTGQLIVAYAIE 287 (737)
T ss_pred ccceEEEEEcCCCce-eeccccCceEEEeeeeh
Confidence 578999999999995 88888888776544433
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=135.59 Aligned_cols=233 Identities=16% Similarity=0.199 Sum_probs=165.9
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
..+|.+|..-|.|.+|++.+........ -.|...|+.+.--|+ + .+.+-+.|
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r--------------------------~~g~~~it~lq~~p~-d-~l~tqgRd 76 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIR--------------------------LFGRLFITNLQSIPN-D-SLDTQGRD 76 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhh--------------------------hhccceeeceeecCC-c-chhhcCCC
Confidence 4469999999999999998754433211 136678888888886 3 57788889
Q ss_pred CeEEEEECCCCceee-------------------------ee----------------------------cccccceeeE
Q 018293 145 KQVKIWDVAAGKCNL-------------------------TL----------------------------EHHTDKVQAV 171 (358)
Q Consensus 145 g~v~iwd~~~~~~~~-------------------------~~----------------------------~~~~~~v~~~ 171 (358)
+.+.+|++.-+..+. .+ .+..+.+.+.
T Consensus 77 ~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 77 PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 999999876321100 00 0112344454
Q ss_pred EEcCC-CC-cEEEEEeCCCcEEEEEcccCCCc----------cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293 172 AWNHH-SP-QILLSGSFDRSVVMKDARISTHS----------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239 (358)
Q Consensus 172 ~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 239 (358)
.+..+ +. -++++|.++|.+.+||+.++... .....|..++.++.+.+. ...=++|+.+..+..|.+.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeec
Confidence 43322 21 35677889999999999987322 223457788999999873 2344667777788899887
Q ss_pred cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 319 (358)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 319 (358)
...... +....+......+..+.+-||+ +.++|++.|+.|+||..++.++ +..+..|...|++++|+|+.+
T Consensus 236 ~s~gsl-----q~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~- 306 (323)
T KOG0322|consen 236 HSTGSL-----QIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE- 306 (323)
T ss_pred cccCcc-----cccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-
Confidence 652211 2222333345668899999998 9999999999999999999996 445667889999999999977
Q ss_pred EEEEEccCCeEEEEEc
Q 018293 320 VLAIGGSKGKLEIWDT 335 (358)
Q Consensus 320 ~l~~~~~dg~i~vw~~ 335 (358)
++|+++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 7999999999999986
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.5e-18 Score=147.18 Aligned_cols=260 Identities=16% Similarity=0.186 Sum_probs=178.1
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
.++||+++++|+|..||.|.+|.--..+ ......+.+.=|...|++++|+++ +.+|
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------~~~~t~t~lHWH~~~V~~L~fS~~-G~~L 266 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSS-----------------------DDSETCTLLHWHHDEVNSLSFSSD-GAYL 266 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccc-----------------------cccccceEEEecccccceeEEecC-CceE
Confidence 3459999999999999999999753210 111122344568899999999999 5699
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-----------eee
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-----------WAV 207 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~ 207 (358)
++|+..|.+.+|.+++++ .+-+..-.++|..+.++||+ .+.+....|+.|.+....+....... ...
T Consensus 267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred eecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 999999999999999998 55566678999999999999 77778888999999876543322111 112
Q ss_pred cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC----------------------------------------
Q 018293 208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------------------------------------- 247 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---------------------------------------- 247 (358)
.+-.+.++++| ..+.++-.+..|.|++||+.+.......
T Consensus 345 ~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 345 QSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred cccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 34466778888 4557777788888888888765321000
Q ss_pred --C------------CCCcc-----EEEeecCCceeEEEecC-CCCcEEEEEeCCCcEEEEecCCCC--------ceeeE
Q 018293 248 --T------------SQQSS-----FTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQ--------PSCIA 299 (358)
Q Consensus 248 --~------------~~~~~-----~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~ 299 (358)
. ....- .....|...+...++.+ ......++++.||.+++|-+...+ ..+..
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee
Confidence 0 00000 01123444444444433 332378899999999999984321 22333
Q ss_pred ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
...-|..++++.+|+.||. +| +.+.|++|.+||..+...+....+.
T Consensus 504 i~sy~k~~i~a~~fs~dGs-ll-a~s~~~~Itiwd~~~~~~l~~~~~~ 549 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGS-LL-AVSFDDTITIWDYDTKNELLCTEGS 549 (792)
T ss_pred eeccccCcccchhhcCCCc-EE-EEecCCEEEEecCCChhhhhccccc
Confidence 3345788999999999997 45 4678899999999885444443333
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=3.8e-18 Score=131.72 Aligned_cols=244 Identities=19% Similarity=0.250 Sum_probs=183.0
Q ss_pred CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293 46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 125 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 125 (358)
..++.|.+| ++|+..+|++.....|.||.....+. ....+.+..|...|
T Consensus 10 ~~pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~------------------------w~~~htls~Hd~~v 58 (361)
T KOG1523|consen 10 LEPITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADL------------------------WEPAHTLSEHDKIV 58 (361)
T ss_pred cCceeeeee-------cCCCceEEeccCCceEEEEEecCCCC------------------------ceeceehhhhCcce
Confidence 445567777 89999999999999999999864332 44556777899999
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEEC-CCC--ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDV-AAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS- 201 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 201 (358)
++++|+|. .+.|++|+.|..-.+|.. ..+ ++...+..+...++++.|+|.+ +.|++|+....|.+|-.+....-
T Consensus 59 tgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 59 TGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred eEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee
Confidence 99999999 678999999999999998 333 4555666688999999999999 88999999999999988765432
Q ss_pred ---cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC---------CCCCCCccEEEeecCCceeEEEec
Q 018293 202 ---GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP---------DSTSQQSSFTLHAHDKAVCTISYN 269 (358)
Q Consensus 202 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~i~~~ 269 (358)
.....+.+.|.++.|+| ++-++++|+.|+..++|..--..... ..+.......+....+.+..+.|+
T Consensus 137 VsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred hhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 22345678899999999 56689999999999998764322111 111222333344556889999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293 270 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 327 (358)
|.| +.|+-.+.|..+.+-|.....+ .+.......-+..++.|-.+.. ++.++.|
T Consensus 216 ~sG-~~lawv~Hds~v~~~da~~p~~-~v~~~~~~~lP~ls~~~ise~~--vv~ag~~ 269 (361)
T KOG1523|consen 216 PSG-NRLAWVGHDSTVSFVDAAGPSE-RVQSVATAQLPLLSVSWISENS--VVAAGYD 269 (361)
T ss_pred CCC-CEeeEecCCCceEEeecCCCch-hccchhhccCCceeeEeecCCc--eeecCCC
Confidence 999 8888888899999999877643 2222222236788888877665 4445555
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.5e-18 Score=151.99 Aligned_cols=249 Identities=19% Similarity=0.222 Sum_probs=178.1
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-CCCCc
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRN 136 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~ 136 (358)
.+.|+|-...++++...-.|+|||...++....+..-. .-...|+.+.+- .++..
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------------------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA------------------------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCC------------------------CCCCccceeeeecccchh
Confidence 44568888899999878899999998665543221100 133568888874 44466
Q ss_pred EEEEEEcCCeEEEEECC-C----Cceeeeecc-------cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-
Q 018293 137 ILASASADKQVKIWDVA-A----GKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF- 203 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~-~----~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~- 203 (358)
++++|+.||.|+||+-- + .+.+..+.+ ..+.-.-+.|.... .+|++++.-..|++||........-
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeec
Confidence 89999999999999742 2 223332221 11112346787776 5666777688999999988765432
Q ss_pred eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc--eeEEEecCCCCcEEEEEeC
Q 018293 204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGST 281 (358)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~ 281 (358)
..+....++++.-+...++++++|..||.|++||.|.... ...+.....|... |..+.+.+.|-..|++|+.
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeecc
Confidence 2234456777776666778999999999999999998743 2356667778776 9999999987567999999
Q ss_pred CCcEEEEecCCCCceeeEecCCCC--c-eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 282 DKMVKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 282 dg~i~i~d~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
||.|++||++............|. + .++++..++..+ ++|+|+. +.|+||++...+
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhh
Confidence 999999999985333333333332 3 599999999999 7999888 999999986543
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=146.32 Aligned_cols=246 Identities=31% Similarity=0.471 Sum_probs=187.7
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEec-CCCCCcE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNI 137 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~ 137 (358)
.|.+.+..++.++.|+.+.+|+...... ....+.++. ..+..+.+ ++++...
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHDSSVSKLALSSPDGNSI 125 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCCCceeeEEEECCCcceE
Confidence 3478899999999999999999875430 111222222 36666666 7774435
Q ss_pred EEEEEc-CCeEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeC-CCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 138 LASASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 138 l~s~~~-dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
++..+. |+.+.+|+... ......+..|...|..++|+|++ ..+++++. |+.+++|++...........+...+.++
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 555444 99999999988 77888888999999999999999 67777775 9999999999866666566688999999
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE-EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
+|+|++...+++++.|+.+++||.... .... .+..|.... ...|+|++ .++++++.|+.+++|+.+..
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCC
Confidence 999865535555589999999988744 4444 577777664 33899988 78889999999999999877
Q ss_pred CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
.. .......|...+.++.|.|++.. +++++.|+.+.+|+..+........
T Consensus 274 ~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 274 SS-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred Cc-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence 64 22233677889999999998885 5558888999999988776555443
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.1e-18 Score=138.74 Aligned_cols=172 Identities=23% Similarity=0.348 Sum_probs=119.4
Q ss_pred cccCCCc-EEEEEEecCCCceEEEEEEeccCCCC--CceEeece-eecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293 2 TINPNDA-VIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 77 (358)
Q Consensus 2 ~~~p~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 77 (358)
.|.++.- .+++|+.+. .+.+|-.+...+.. +.+..+.. ........++ +|+|+|++||+|+.+|.|
T Consensus 20 dfq~n~~~~laT~G~D~---~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~v-------Rf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDK---DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVV-------RFSPDGELLASGGDGGEV 89 (434)
T ss_pred EeccCcccceecccCcc---ceeeeeeeecCCCCCceeEEEeecccCCcceeEEE-------EEcCCcCeeeecCCCceE
Confidence 4566555 888887775 34455444443322 22222111 1112222344 459999999999999999
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 157 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 157 (358)
.+|.......... +. -.......+.....+.+|...|..++|+|+ +.++++++.|+.+++||+..|+.
T Consensus 90 ~lWk~~~~~~~~~--------d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 90 FLWKQGDVRIFDA--------DT---EADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred EEEEecCcCCccc--------cc---hhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEecccee
Confidence 9998764111100 00 001112345566677889999999999999 77999999999999999999999
Q ss_pred eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
...+..|...+..++|.|-+ +++++-+.|...+.+.+.
T Consensus 158 ~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred Eeeccccccccceeecchhh-hhhhhhccCcccceeeee
Confidence 99999999999999999998 888888888766655543
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.8e-17 Score=120.66 Aligned_cols=286 Identities=16% Similarity=0.214 Sum_probs=173.8
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCc-eEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+++|.++.|++|...+++..+.+.-......+.+. ...........++..+++ + ..+|++|+ ||.|+=|
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f-------~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF-------H--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee-------e--hhheeecc-CceEEEe
Confidence 57999999999988884444444333322211111 111111112223333333 3 55777776 5999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
..+....... .+..+. ...+.+.-...--.|+++...|..+ -++.++.|+.+.-||+++|+..++
T Consensus 87 ~W~E~~es~~---------~K~lwe-----~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 87 EWNEEEESLA---------TKRLWE-----VKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred eehhhhhhcc---------chhhhh-----hcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEE
Confidence 9875433110 000000 0001111011224689999999844 455556899999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----------ecCCeeeEEEcCCCCCeEEEEecC
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHAEHSFVVSLED 230 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~d 230 (358)
+++|++.+.++.-.... ..+++|++||++++||.++.+....... ....|.+++.+. ..+++| ..
T Consensus 152 ~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG-gG 226 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG-GG 226 (325)
T ss_pred EcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEec-CC
Confidence 99999999999885544 5689999999999999999876543221 123466666544 356665 45
Q ss_pred CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEE
Q 018293 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 310 (358)
Q Consensus 231 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~ 310 (358)
..+.+|.++..+. .+++.+. .++..+.|.. ..+++++..+.|.-|.+..-- ....+.......+
T Consensus 227 p~lslwhLrsse~-------t~vfpip---a~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl---~a~ip~~s~~c~s 290 (325)
T KOG0649|consen 227 PKLSLWHLRSSES-------TCVFPIP---ARVHLVDFVD---DCVLIGGEGNHVQSYTLNGVL---QANIPVESTACYS 290 (325)
T ss_pred CceeEEeccCCCc-------eEEEecc---cceeEeeeec---ceEEEeccccceeeeeeccEE---EEeccCCccceee
Confidence 6799999998732 3334443 4567777875 567888877889999875431 2222222233455
Q ss_pred EEEcCCCCeEEEEEccCCeEEEE
Q 018293 311 VAFSEDSPFVLAIGGSKGKLEIW 333 (358)
Q Consensus 311 ~~~~~~~~~~l~~~~~dg~i~vw 333 (358)
..|+..--.++..++....+.|+
T Consensus 291 ~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 291 ASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ecccCCceEEEEecccceeeeee
Confidence 55543332245556666667665
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=3.8e-20 Score=149.37 Aligned_cols=237 Identities=16% Similarity=0.233 Sum_probs=191.7
Q ss_pred ccce-eeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE
Q 018293 49 PLCM-AWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 127 (358)
Q Consensus 49 ~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 127 (358)
.+.+ ++-|+.+.++.+|++|+.|+..|.|-.+|..+......+. -...|.+
T Consensus 124 ~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------------------v~Etv~D 175 (545)
T KOG1272|consen 124 DLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------------------VMETVRD 175 (545)
T ss_pred cccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----------------------------hhhhhhh
Confidence 3344 5666777789999999999999999999998766554332 2356888
Q ss_pred EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 207 (358)
Q Consensus 128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 207 (358)
+.|-.+ .+++|++ ....+.||| ..|..++.++.| ..|..+.|.|.. .+|++++..|.+..-|+.+++.+......
T Consensus 176 v~~LHn-eq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~ 250 (545)
T KOG1272|consen 176 VTFLHN-EQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTG 250 (545)
T ss_pred hhhhcc-hHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHcc
Confidence 999877 5566655 567899999 678888888865 568999999998 88999999999999999999998877777
Q ss_pred cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293 208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 287 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 287 (358)
.+.+..++-+|.+. .+-+|..+|+|.+|..... .++..+..|.++|.+|++.++| ++++|.+.|..++|
T Consensus 251 ~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKI 319 (545)
T ss_pred CCccchhhcCCccc-eEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeE
Confidence 78888999999544 8888999999999999887 7788888999999999999998 99999999999999
Q ss_pred EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
||+++-.. +.+... .-+...+++|..| +||. +....+.||.=
T Consensus 320 WDlR~~~q--l~t~~t-p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~d 361 (545)
T KOG1272|consen 320 WDLRNFYQ--LHTYRT-PHPASNLSLSQKG--LLAL-SYGDHVQIWKD 361 (545)
T ss_pred eeeccccc--cceeec-CCCcccccccccc--ceee-ecCCeeeeehh
Confidence 99998762 222222 3456778899887 4664 44557999953
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=3.1e-17 Score=126.66 Aligned_cols=239 Identities=16% Similarity=0.281 Sum_probs=164.6
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc--ccEEEEecCCCCCc
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRN 136 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~ 136 (358)
++|+.|..-+++|..+| .+||+.+....... ..-+. -.+.-+-|-.+ .
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~---------------------------r~~~~~G~~~veMLfR~N--~ 60 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESAS---------------------------RQFIDGGFKIVEMLFRSN--Y 60 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhh---------------------------hccccCchhhhhHhhhhc--e
Confidence 45588999999998665 78999874222110 00111 12222223222 2
Q ss_pred EEEEEEcC------CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecC
Q 018293 137 ILASASAD------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAA 209 (358)
Q Consensus 137 ~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~ 209 (358)
+.+.|+.+ +.|.|||=...+++.++. ...+|.++.+.++. +++. ..+.|.+|...+. +..........
T Consensus 61 laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~N 135 (346)
T KOG2111|consen 61 LALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSN 135 (346)
T ss_pred EEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence 33344333 479999966667777776 67889999999864 4444 3678999998744 33332222222
Q ss_pred CeeeEEEcCCCCCeEEE--EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc-EE
Q 018293 210 DVESLAWDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VK 286 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~ 286 (358)
+---++..|..+..+++ |..-|.|++-|+...+. .....+.+|.+.|.|++.+.+| .++||++..|+ |+
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIR 207 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIR 207 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEE
Confidence 22234445543433333 56679999999987632 2457889999999999999998 99999999998 89
Q ss_pred EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
|||..++.++...........|.+|+|||+..+ ||+++..|+++|+.+.....-
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCCC
Confidence 999999996555555555678999999999995 888999999999999875533
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=2.8e-18 Score=132.42 Aligned_cols=209 Identities=21% Similarity=0.300 Sum_probs=166.4
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 197 (358)
-..+|+|.+|+++ +..+|.+..+..|.||..... +..++++.|...|+.++|+|.. +.|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence 3478999999999 789999999999999998765 4678889999999999999999 7899999999999999843
Q ss_pred C---CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 198 S---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 198 ~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
+ ++...+..+....+++.|+| .++.|++|+....|.+|-.+....-. -..+.-..+.+.|+++.|+|++ -
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred CCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc-c
Confidence 3 23445667889999999999 57799999999999999887652211 1111234467789999999987 8
Q ss_pred EEEEEeCCCcEEEEecC-----CCC---------c--eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 275 LLATGSTDKMVKLWDLS-----NNQ---------P--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 275 ~l~~~~~dg~i~i~d~~-----~~~---------~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
+|++|+.|+..+||..- +.. + ..+.++....+.+..+.|+|+|. .|+-.+.|..+.+-|....
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence 99999999999999742 100 0 12233334567899999999999 5888999999999998766
Q ss_pred C
Q 018293 339 A 339 (358)
Q Consensus 339 ~ 339 (358)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 5
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-18 Score=138.88 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=155.6
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
.+++|+.+ +..+++|+.||++|+|+..+...+.....|...|.++.|+||+ .+|++-+.| ..++|+.+++.......
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence 78899999 6699999999999999988888888888899999999999999 899999999 99999999985554333
Q ss_pred --eecCCeeeEEEcCCC---CCeEEE-EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 206 --AVAADVESLAWDPHA---EHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 206 --~~~~~i~~~~~~~~~---~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
........+.|..++ ..++++ -..-+.|+.||+....... .-...+...-...|++++.+++| ++++.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 223346677777654 223333 2345667777776553211 01222222234569999999999 999999
Q ss_pred eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
+.||.|.|++..+.+. .....+.|...|+.+.|+|+.++ +++.+.|..+.|..+.-.+
T Consensus 300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence 9999999999988774 33445679999999999999996 7788889999998876533
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=147.16 Aligned_cols=231 Identities=19% Similarity=0.304 Sum_probs=168.1
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
.++|.|||..|+.+. +..+.+||.+.+..++ .+++|++.|+|++|+.+ +..
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---------------------------tLKgHKDtVycVAys~d-Gkr 67 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---------------------------PLKGHKDTVYCVAYAKD-GKR 67 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCccccc---------------------------ccccccceEEEEEEccC-Cce
Confidence 456689999888776 4578899998766555 57799999999999999 679
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
+|+|+.|..|.+|+.+- +-+..+ .|.+.|.|+.|+|-. +.+++++-. ..-+|........ .......+.+++|.
T Consensus 68 FASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 68 FASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWT 141 (1081)
T ss_pred eccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeec
Confidence 99999999999998542 222333 489999999999988 778877643 4567876554332 23345678999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC----cEEEEEeCCCcEEEEecCCC
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP----NLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~----~~l~~~~~dg~i~i~d~~~~ 293 (358)
.+ +.+++.|-.+|+|.+-+..... ...+....+..++|.+++|+|..+ ..+++.....++.+|.+...
T Consensus 142 nD-GqylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 142 ND-GQYLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred CC-CcEEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 85 5699999999999887544321 122223345678999999999642 46778888888888887653
Q ss_pred CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
. +..-..-.-...|+.+.++|+| +..|+.|+.+++|--
T Consensus 214 ~---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 214 Q---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR 251 (1081)
T ss_pred e---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence 2 2111111223557899999998 555888999998864
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.5e-17 Score=144.31 Aligned_cols=211 Identities=17% Similarity=0.108 Sum_probs=136.8
Q ss_pred CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
++.|||||++|+..+.+ ..|++||+.+++... ...+.+|. ..++|+|+|
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------------------l~~~~g~~---~~~~wSPDG 259 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------------------VASFRGHN---GAPAFSPDG 259 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-------------------------EecCCCcc---CceeECCCC
Confidence 34559999999987643 479999987543211 11222333 367999995
Q ss_pred CcEEEE-EEcCCeEEEE--ECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCe
Q 018293 135 RNILAS-ASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV 211 (358)
Q Consensus 135 ~~~l~s-~~~dg~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 211 (358)
. .|+. .+.+|.+.|| |+.+++ ...+..+...+....|+|++..+++++..+|...+|++...........+..
T Consensus 260 ~-~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 260 S-RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred C-EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 4 5554 4578876655 665555 3455556677889999999944555555788889998765432222222222
Q ss_pred eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293 212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
....|+|++. .++..+.++ +.+||+.++. .. .+... ....++.|+|++ ++|+.++.++...+|++.
T Consensus 336 ~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 YSAQISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCccCCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-EecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence 4578999765 565555554 5669988762 11 11111 123567899998 788888888988888764
Q ss_pred --CCCceeeEecCCCCceeEEEEEcCC
Q 018293 292 --NNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 292 --~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
+++ ....+..|.+.+...+|+|-
T Consensus 402 ~~~G~--~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGR--FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCC--ceEEccCCCCCCCCcccCCC
Confidence 343 45666777788888999985
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.8e-18 Score=143.07 Aligned_cols=263 Identities=19% Similarity=0.293 Sum_probs=178.2
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeece-eecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
++|+|..+.|+++..+ +.+++|.++.... ....+.-+.+ ..+..+++|+.. +++++.+++|+.||+|+
T Consensus 300 l~~~~sep~lit~sed---~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-------~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 300 LAFHPSEPVLITASED---GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-------PSNGEHCYSGGIDGTIR 369 (577)
T ss_pred hhcCCCCCeEEEeccc---cchhhhhhcccCCccccceeeeEEEecccCceEEEEe-------cCCceEEEeeccCceee
Confidence 4789999999999555 5666666522111 1111111111 123444556654 78999999999999999
Q ss_pred EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 158 (358)
.|++....... ...........+.||.+.|+.+++++. ...|++++.||+++.|+.....+
T Consensus 370 ~w~~p~n~dp~-----------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 370 CWNLPPNQDPD-----------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred eeccCCCCCcc-----------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-
Confidence 99886221111 011234455578899999999999998 67899999999999999876655
Q ss_pred eeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-------eecCCeeeEEEcCCCCCeEEEEec
Q 018293 159 LTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLE 229 (358)
Q Consensus 159 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~ 229 (358)
.++.. ..+...++.+-.......++...-+.-.++++.......... .....+..+.++|.. .+.+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEeccc
Confidence 33322 223345566654442333443334444444444333222111 112457788899955 58999999
Q ss_pred CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC
Q 018293 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 305 (358)
Q Consensus 230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 305 (358)
|+.|+++|..++ ..++....|...++++++.|+| -+|++++.|+.+++|.+.... ++.....|.
T Consensus 510 d~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~--~~~es~~~r 573 (577)
T KOG0642|consen 510 DRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT--CVLESTAHR 573 (577)
T ss_pred CCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--eeecccccc
Confidence 999999999998 8888999999999999999998 799999999999999987665 555555553
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.9e-16 Score=133.38 Aligned_cols=240 Identities=12% Similarity=0.170 Sum_probs=148.8
Q ss_pred EEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE-EcCCe
Q 018293 68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQ 146 (358)
Q Consensus 68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~ 146 (358)
+++...++.|++|++.+...... ...+ .+.+....++++|+ +++|+++ ..++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~------------------------~~~~-~~~~~~~~l~~spd-~~~lyv~~~~~~~ 58 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTL------------------------LQVV-DVPGQVQPMVISPD-KRHLYVGVRPEFR 58 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceee------------------------eeEE-ecCCCCccEEECCC-CCEEEEEECCCCc
Confidence 44456789999999964221111 1111 13345678899999 4565554 56889
Q ss_pred EEEEECC-CCce--eeeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCc-cce--eeecCCeeeEEEcCC
Q 018293 147 VKIWDVA-AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHS-GFK--WAVAADVESLAWDPH 219 (358)
Q Consensus 147 v~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~--~~~~~~i~~~~~~~~ 219 (358)
|.+|++. +++. +.... .......++|+|++ +++++++ .++.|.+|++...... ... .........++++|+
T Consensus 59 i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 59 VLSYRIADDGALTFAAESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD 136 (330)
T ss_pred EEEEEECCCCceEEeeeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC
Confidence 9999986 3432 22222 23356789999999 5555554 5899999999743322 111 112345677899997
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCC--CCce
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPS 296 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~ 296 (358)
+..++++...++.|.+||+.+....... ......... ......++|+|++ ++++++.. ++.|.+|++.. ++..
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~--~~~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQ--EPAEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCccccc--CCCceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 7655566777899999999763210000 000111111 2345789999998 67766655 89999999974 3322
Q ss_pred eeEecCCC------CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 297 CIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 297 ~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.+...... ......+.++|++++++++...++.|.+|++....
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 23222211 11234688999999866655568899999996544
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-16 Score=123.80 Aligned_cols=297 Identities=16% Similarity=0.222 Sum_probs=183.0
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL 82 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~ 82 (358)
.+|-=.-++++..++ .|.+|+... ..+....+. ....+.|++|-|. .++-|++|...| |.+|..
T Consensus 106 WhqH~~~fava~ndd-----vVriy~kss-t~pt~Lks~---sQrnvtclawRPl------saselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDD-----VVRIYDKSS-TCPTKLKSV---SQRNVTCLAWRPL------SASELAVGCRAG-ICIWSD 169 (445)
T ss_pred echhhhhhhhhccCc-----EEEEeccCC-CCCceecch---hhcceeEEEeccC------Ccceeeeeecce-eEEEEc
Confidence 344444566777777 889999887 333333322 2344569999764 345788887654 789988
Q ss_pred ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCCCceeeee
Q 018293 83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLTL 161 (358)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~ 161 (358)
+......... +........+....+| ..|+++.|+++|. .+++++ .|..|.|||..++..+...
T Consensus 170 s~tln~~r~~-------------~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 170 SRTLNANRNI-------------RMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred Cccccccccc-------------ccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc
Confidence 6432221100 0011122233344456 7899999999954 666665 5678999999999776655
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
....+.+.-+.|+||+ .+|+++.-|+..++|+..............+.|...+|+|.|..++++.+.... +|.+...
T Consensus 235 ~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~ 311 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFD 311 (445)
T ss_pred ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeec
Confidence 4456778899999999 889999999999999665544333233445589999999988877777765544 4444332
Q ss_pred CCCCCCCC------CCccEEEe-----e----cCCceeEEEecCCCCcEEEEEeCCC--------cEEEEecCCCCceee
Q 018293 242 KSDPDSTS------QQSSFTLH-----A----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDLSNNQPSCI 298 (358)
Q Consensus 242 ~~~~~~~~------~~~~~~~~-----~----~~~~i~~i~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~ 298 (358)
........ ...+..+. . --+++.+++|.|.| .+|++.-..+ .|.+||.+...+...
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 22111110 00011110 1 13578899999999 7888765543 367788776543222
Q ss_pred E--ecCCCCceeEEEEEcC---CCCeEEEEEccCCeEEEEEcc
Q 018293 299 A--SRNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 299 ~--~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~vw~~~ 336 (358)
. .+.+ ...-..++|+| +++ +|..+=..|.+.-|++.
T Consensus 391 s~cg~i~-ge~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIG-GEYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT 431 (445)
T ss_pred Eeccccc-CCCCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence 1 1111 11233456655 455 56667777888888764
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=5.9e-17 Score=140.67 Aligned_cols=203 Identities=14% Similarity=0.134 Sum_probs=134.0
Q ss_pred CCCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEE-EeCCCcEEE
Q 018293 119 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLS-GSFDRSVVM 192 (358)
Q Consensus 119 ~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i 192 (358)
..|...+...+|+|+ ++.|+..+.+ ..|.+||+.+++. +..+.+ ....++|+|+| +.|+. .+.+|.+.+
T Consensus 200 t~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG-~~La~~~~~~g~~~I 274 (429)
T PRK01742 200 NRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDG-SRLAFASSKDGVLNI 274 (429)
T ss_pred ccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCC-CEEEEEEecCCcEEE
Confidence 357788999999999 4566666543 3699999988754 333333 34468999999 55554 457887666
Q ss_pred E--EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293 193 K--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 270 (358)
Q Consensus 193 ~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 270 (358)
| |+.++.... ...+...+....|+|++..+++++..+|...+|++.... .....+ .+.. ....|+|
T Consensus 275 y~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 275 YVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISA 342 (429)
T ss_pred EEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCC
Confidence 5 554444322 334555678899999876566666678889999886542 111222 3333 4578999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc--CCCcccccc
Q 018293 271 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNRF 345 (358)
Q Consensus 271 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~ 345 (358)
+| +.|+..+.++ +.+||+.+++...+. ... ...++.|+|+|++ ++.++.+|.+.+|++. ++....++.
T Consensus 343 DG-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 343 DG-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CC-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEcc
Confidence 98 6777766654 666999888643221 111 2356789999995 7777778888888763 455555443
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=155.28 Aligned_cols=229 Identities=17% Similarity=0.289 Sum_probs=174.3
Q ss_pred ceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc
Q 018293 110 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189 (358)
Q Consensus 110 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (358)
++.+....+.+|..+|+|..|... +.++++|+.|..|+||.+++..++....+|.+.|+.++.+... .++++++.|..
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~v 255 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCce
Confidence 345566678899999999999999 6799999999999999999999999999999999999998887 88999999999
Q ss_pred EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC-CCCC----CCCCCCccEEEe-------
Q 018293 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA-KSDP----DSTSQQSSFTLH------- 257 (358)
Q Consensus 190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~~----~~~~~~~~~~~~------- 257 (358)
|++|.+.++..+..+.+|.+.|++++|+|- .+.+.||++++||.+-. .... ..........+.
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence 999999999999999999999999999993 37789999999999821 1100 000000000000
Q ss_pred ---------ecCCceeEEEecC----------CCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293 258 ---------AHDKAVCTISYNP----------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 318 (358)
Q Consensus 258 ---------~~~~~i~~i~~~~----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 318 (358)
.....+.+++|.. +-..+.+++-.+..+++|++.++. ......+|...+..+.++|-+.
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCc
Confidence 0000111222222 111334444456668889988887 3555678888999999999887
Q ss_pred eEEEEEccCCeEEEEEccCCCcccccccc
Q 018293 319 FVLAIGGSKGKLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 319 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 347 (358)
.+..+++.||...|||+..|..++..+..
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeecc
Confidence 77889999999999999999888766533
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=7e-18 Score=138.95 Aligned_cols=183 Identities=16% Similarity=0.247 Sum_probs=145.8
Q ss_pred CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
...|+.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+| .-|+++++||.|++|.-. +-..........+|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEE
Confidence 34688889999999988 6678888889999999999999999 889999999999999843 33334455677899999
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
+|.|+.++.+++.+ +.+.+=-+... ..+.....|++-|.++.|++.. +++++|++|-..+|||-....
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc
Confidence 99998887777654 55555555443 5567788999999999999987 899999999999999987654
Q ss_pred ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
++....|..+|++++|.|+. +++.++. +++++=..+.|
T Consensus 220 ---Lf~S~~~ey~ITSva~npd~--~~~v~S~-nt~R~~~p~~G 257 (737)
T KOG1524|consen 220 ---LFTSAAEEYAITSVAFNPEK--DYLLWSY-NTARFSSPRVG 257 (737)
T ss_pred ---cccCChhccceeeeeecccc--ceeeeee-eeeeecCCCcc
Confidence 66777899999999999994 4665654 35554333333
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=5.1e-17 Score=128.81 Aligned_cols=211 Identities=16% Similarity=0.199 Sum_probs=167.6
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc----eeeeecccccceeeEEEcCCCCcEEEEEeCC--CcEEEEE
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKD 194 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d 194 (358)
...+|-.+..... .|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++..+.++++|+.. ..+.+||
T Consensus 104 ~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 4566766666533 78888999999999988442 33344433 4567777788777888889998 8999999
Q ss_pred cccCCCccce---------eeecCCeeeEEEcCCC--CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293 195 ARISTHSGFK---------WAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263 (358)
Q Consensus 195 ~~~~~~~~~~---------~~~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (358)
++..+.+..- ...+-.++.+.|-+ + .+.|++++.-+.+++||.+.+ .+++..+.....++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPI 250 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcc
Confidence 9877433211 11233577888987 4 678999999999999999987 37888888889999
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
+++...|.+ +++++|..-|.+..||++.++. ....+.+..+.|+++..+|.++ +++++|-|+.++|+|+.+.+.+..
T Consensus 251 s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 251 SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eeeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhh
Confidence 999999998 9999999999999999999873 3334778889999999999999 599999999999999999777766
Q ss_pred cccc
Q 018293 344 RFSK 347 (358)
Q Consensus 344 ~~~~ 347 (358)
.+..
T Consensus 328 vYvK 331 (412)
T KOG3881|consen 328 VYVK 331 (412)
T ss_pred hhhh
Confidence 5543
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=135.59 Aligned_cols=297 Identities=15% Similarity=0.165 Sum_probs=204.2
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC-CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
+.|+-.|.+++.++.+. ++.+|+...... ......| ...++..+|+|+ .+.+-+++++.||.+++
T Consensus 148 V~FN~~Gd~l~SgSDD~-----~vv~WdW~~~~~~l~f~SGH----~~NvfQaKFiP~-----s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDL-----QVVVWDWVSGSPKLSFESGH----CNNVFQAKFIPF-----SGDRTIVTSSRDGQVRV 213 (559)
T ss_pred eeecccCceeeccCccc-----eEEeehhhccCccccccccc----ccchhhhhccCC-----CCCcCceeccccCceee
Confidence 45778888988885554 666666655321 1222233 223345567764 45667999999999998
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 159 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 159 (358)
=.+....... ....+..|.++|.-++.-|+....|.+++.|+.+.-.|++++.+..
T Consensus 214 s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 214 SEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred eeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 8775322222 1224456999999999999988899999999999999998775433
Q ss_pred ee---ccccc---ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc------ce------eeecCCeeeEEEcCCCC
Q 018293 160 TL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FK------WAVAADVESLAWDPHAE 221 (358)
Q Consensus 160 ~~---~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~------~~~~~~i~~~~~~~~~~ 221 (358)
.+ ..+.. ....++..|...+.+++++.|-.+++||.+.-.... .. ....-.|++++++.++.
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 33 22333 567889999887799999999999999987543221 00 12234589999997555
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCC---CCccEE-EeecCC--ceeEEEec-CCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTS---QQSSFT-LHAHDK--AVCTISYN-PLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~-~~~~~~--~i~~i~~~-~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
-++++..|-.|+++.-..+........ ...+.. +++|.. .|.++-|- |.. .++++|+.-|.|.||+-.+++
T Consensus 350 -ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 350 -ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred -ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhH
Confidence 566666788899985443322111111 122223 667743 46666654 544 899999999999999999998
Q ss_pred ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
.+. .+.+....|+|+.-+|--. +||++|-|..|+||-..+.+.
T Consensus 428 ii~--~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 428 IIR--FMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred HHH--HhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence 544 4444445899999999998 799999999999998855443
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=122.99 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=124.9
Q ss_pred CcccEEEEecCCCC--CcEEEEEEcCCeEEEEECCCCcee----------eeecccccceeeEEEcCCCCcEEEEEeCCC
Q 018293 121 HTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGKCN----------LTLEHHTDKVQAVAWNHHSPQILLSGSFDR 188 (358)
Q Consensus 121 h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (358)
..+.+.|..+.-+. .-++++|..+|.|.+||+.++..+ .....|..+|.++.+.+.- ..=++++.+.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~d 227 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADD 227 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccc
Confidence 45678888764332 236778889999999999987333 3345689999999998765 4457788888
Q ss_pred cEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293 189 SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264 (358)
Q Consensus 189 ~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (358)
.+..|.+...... .........+..+..-|| ++++++++.|+.|++|..++. .++..+.-|...|+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVN 297 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccC---------Cchhhhhhhhccee
Confidence 8999988754221 112223456888999995 569999999999999999998 88889999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEec
Q 018293 265 TISYNPLVPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 265 ~i~~~~~~~~~l~~~~~dg~i~i~d~ 290 (358)
+++|+|+. .++++++.|++|.+|++
T Consensus 298 ~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCC-chhhhccCCceEEeeec
Confidence 99999987 89999999999999986
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=9.7e-17 Score=132.27 Aligned_cols=228 Identities=15% Similarity=0.225 Sum_probs=160.8
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
.+++--|+.|-..|.|++.|....+... .......-.+..|+|+.|-|.+..+++.+
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sk-----------------------lfne~r~i~ktsvT~ikWvpg~~~~Fl~a 238 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSK-----------------------LFNEERLINKSSVTCIKWVPGSDSLFLVA 238 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHH-----------------------hhhhcccccccceEEEEEEeCCCceEEEE
Confidence 4667778888888999988865311100 00001112347899999999888899999
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEE--cCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
-.+|.+.+||.+ +....+...| .+++ ..+......+ ..+...+.........|..++|+|
T Consensus 239 ~~sGnlyly~~~----------~~~~~t~p~~~~~k~~-~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~- 300 (636)
T KOG2394|consen 239 HASGNLYLYDKE----------IVCGATAPSYQALKDG-DQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSP- 300 (636)
T ss_pred EecCceEEeecc----------ccccCCCCcccccCCC-CeeEEeeeec------cccCCccceeEeccccccceeEcC-
Confidence 999999999962 1111122222 2333 2232221111 011122332333456899999999
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
++.+|++.+.||.++|||..+. ..+..++..-+...|++|+||| ++|++|++|..|.||.+...+ .+.
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR--VVA 368 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR--VVA 368 (636)
T ss_pred CCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccce--EEE
Confidence 5569999999999999999986 5555666667889999999999 999999999999999999888 577
Q ss_pred ecCCCCceeEEEEEcC-----------------------------------C------------CCeEEEEEccCCeEEE
Q 018293 300 SRNPKAGAVFSVAFSE-----------------------------------D------------SPFVLAIGGSKGKLEI 332 (358)
Q Consensus 300 ~~~~~~~~v~~~~~~~-----------------------------------~------------~~~~l~~~~~dg~i~v 332 (358)
.-++|...|+.++|.| + -.|.+.+.+.|-.+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 7889999999999983 0 1457888999999999
Q ss_pred EEccCCCccc
Q 018293 333 WDTLSDAGIS 342 (358)
Q Consensus 333 w~~~~~~~~~ 342 (358)
||+.......
T Consensus 449 WDlteD~L~~ 458 (636)
T KOG2394|consen 449 WDLTEDVLVP 458 (636)
T ss_pred Eecchhhccc
Confidence 9997655443
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.3e-17 Score=133.33 Aligned_cols=197 Identities=17% Similarity=0.260 Sum_probs=147.4
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
.++|+.+|..|++|+.||.+|||++.....+ .....|...|.++.|+|+ +++
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------------l~e~~~~~eV~DL~FS~d-gk~ 200 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------------LEEIAHHAEVKDLDFSPD-GKF 200 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhh---------------------------hhhHhhcCccccceeCCC-CcE
Confidence 4567999999999999999999997643332 234469999999999999 779
Q ss_pred EEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCC--Cc-EEEE-EeCCCcEEEEEcccCCC-----ccceee
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHS--PQ-ILLS-GSFDRSVVMKDARISTH-----SGFKWA 206 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~~-~l~~-~~~dg~i~i~d~~~~~~-----~~~~~~ 206 (358)
|++-+.| ..+||+.+++..+.... ..+.....+.|+.++ +. ++++ ....+.|+.||+..... ......
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 9999999 89999999996666554 233456677787654 12 2322 23456677777654332 111222
Q ss_pred ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293 207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 286 (358)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 286 (358)
....|++++.+++ +++++.|+.||.|.+++..+.+ ......+.|...|+.+.|+|+. +++++.+.|....
T Consensus 280 ~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~ 349 (398)
T KOG0771|consen 280 RFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAA 349 (398)
T ss_pred ccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc-CcccccccCCcee
Confidence 3457999999995 5699999999999999998872 3444557899999999999998 8889888898888
Q ss_pred EEecCCC
Q 018293 287 LWDLSNN 293 (358)
Q Consensus 287 i~d~~~~ 293 (358)
+..+.-.
T Consensus 350 v~~l~vd 356 (398)
T KOG0771|consen 350 VTKLAVD 356 (398)
T ss_pred EEEEeec
Confidence 8877653
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.5e-17 Score=135.28 Aligned_cols=213 Identities=19% Similarity=0.296 Sum_probs=154.6
Q ss_pred cceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEe
Q 018293 50 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 129 (358)
Q Consensus 50 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 129 (358)
.|++| +.+|.+|++|+.|-.+.|||.-..+.+. ..-.+|...|.++.
T Consensus 54 N~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~Kllh--------------------------sI~TgHtaNIFsvK 100 (758)
T KOG1310|consen 54 NCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLH--------------------------SISTGHTANIFSVK 100 (758)
T ss_pred cceee-------cCCCCEEeecCCcceEEeecchhcceee--------------------------eeecccccceeEEe
Confidence 37777 8999999999999999999986322222 23348999999999
Q ss_pred cCCCC-CcEEEEEEcCCeEEEEECCCC----------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293 130 WNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 198 (358)
Q Consensus 130 ~~~~~-~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 198 (358)
|-|.. ..++++|..|..|+++|+... +....+..|...|..++-.|++++.+.++++||+++-+|++..
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 98853 458899999999999999742 3455567789999999999999999999999999999999874
Q ss_pred CCcccee----------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC-------CC--CCCccEEE-ee
Q 018293 199 THSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------ST--SQQSSFTL-HA 258 (358)
Q Consensus 199 ~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------~~--~~~~~~~~-~~ 258 (358)
....... ..--...++..+|...++|++|+.|...++||.+....... .+ ...++..+ .+
T Consensus 181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 3221111 11134678999999999999999999999999654322110 00 00112111 11
Q ss_pred cC-----------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293 259 HD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 296 (358)
Q Consensus 259 ~~-----------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 296 (358)
|- ..++-+.|+|+|..+|++-+ ...|+++|+...+..
T Consensus 261 hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 261 HLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSP 308 (758)
T ss_pred cccCcccccccceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCc
Confidence 21 23567899999966666544 346999999887753
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-16 Score=124.07 Aligned_cols=239 Identities=17% Similarity=0.176 Sum_probs=160.0
Q ss_pred ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
|++.-..+|++..|-.|++|+-.. .... .........|+|++|-|.+...|+.
T Consensus 106 WhqH~~~fava~nddvVriy~kss-t~pt--------------------------~Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSS-TCPT--------------------------KLKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCC-CCCc--------------------------eecchhhcceeEEEeccCCcceeee
Confidence 577666788999999999999764 1110 0111245679999999998889999
Q ss_pred EEcCCeEEEEECCCC----ce----------eeeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCcccee
Q 018293 141 ASADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 205 (358)
|+..| |++|..... .. +..-.+| .+|++|+|.+|| ..+++++ .|..|.+||..++.......
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc
Confidence 98865 999986521 11 1122344 689999999999 6777766 46789999999998877666
Q ss_pred eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
...+.++-+.|+|++. .+++++-|+..++|.....- .... .....+.|...+|+|+|..+|++.+..-.+
T Consensus 236 ~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~w--------t~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSW--------TKER-WILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccc--------eecc-eeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 6778899999999765 78888889999999655431 1121 222345899999999996677776655444
Q ss_pred EEEecCCCCce-----------eeEec-----C----CCCceeEEEEEcCCCCeEEEEEccC--------CeEEEEEccC
Q 018293 286 KLWDLSNNQPS-----------CIASR-----N----PKAGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDTLS 337 (358)
Q Consensus 286 ~i~d~~~~~~~-----------~~~~~-----~----~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~vw~~~~ 337 (358)
+-......... .+..+ . ...+...+++|.|.|.| ||+.-.. +.|.+||...
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhcccc
Confidence 43322221110 00001 0 11457889999999997 4443222 2356677665
Q ss_pred CCc
Q 018293 338 DAG 340 (358)
Q Consensus 338 ~~~ 340 (358)
.-.
T Consensus 385 sp~ 387 (445)
T KOG2139|consen 385 SPP 387 (445)
T ss_pred cCc
Confidence 443
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=6.2e-18 Score=136.77 Aligned_cols=278 Identities=16% Similarity=0.136 Sum_probs=202.5
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+.+.-+|+.++.|+..+ .+..+|.... . .+.+..+...+..+.|+ .+.+++|++- ...++||
T Consensus 135 ~~ytrnGrhlllgGrKG-----HlAa~Dw~t~---~--L~~Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~yvY 196 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKG-----HLAAFDWVTK---K--LHFEINVMETVRDVTFL-------HNEQFFAVAQ-KKYVYVY 196 (545)
T ss_pred eeecCCccEEEecCCcc-----ceeeeecccc---e--eeeeeehhhhhhhhhhh-------cchHHHHhhh-hceEEEe
Confidence 35677999999997776 6666666553 2 33344445555566665 4677888775 6789999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
|-...+ .+-+. ....|..+.|-|. ..+|++++..|.++--|+.+|+.+..
T Consensus 197 D~~GtE----------------------------lHClk-~~~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~ 246 (545)
T KOG1272|consen 197 DNNGTE----------------------------LHCLK-RHIRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVAS 246 (545)
T ss_pred cCCCcE----------------------------Eeehh-hcCchhhhcccch-hheeeecccCCceEEEeechhhhhHH
Confidence 965322 11222 2356899999998 77999999999999999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
+....+.+..++-+|-+ ..+-+|...|+|.+|.....+++.....|.++|.++++.+ +++++++.+.|..++|||+++
T Consensus 247 ~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred HHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecc
Confidence 98888899999999988 7889999999999999999999888899999999999999 567999999999999999998
Q ss_pred CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec-CCCCceeeEec--CCCCceeEEEEEcCCC
Q 018293 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL-SNNQPSCIASR--NPKAGAVFSVAFSEDS 317 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~ 317 (358)
- ..+.++.. ..+...+++|..| + ++.+....+.||.= -.+.......+ ....++|..+.|.|-.
T Consensus 325 ~---------~ql~t~~t-p~~a~~ls~Sqkg--l-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 325 F---------YQLHTYRT-PHPASNLSLSQKG--L-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred c---------cccceeec-CCCcccccccccc--c-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 7 33444433 3456778888644 4 44455567999952 22111111111 2224589999999976
Q ss_pred CeEEEEEccCCeEEEEEccCCCccc
Q 018293 318 PFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 318 ~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
. +|-.|...|.-.+.=...|+.-.
T Consensus 392 D-vLGIGH~~G~tsilVPGsGePN~ 415 (545)
T KOG1272|consen 392 D-VLGIGHAGGITSILVPGSGEPNY 415 (545)
T ss_pred H-eeeccccCCceeEeccCCCCCCc
Confidence 6 56666666655554444555443
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=1e-17 Score=137.98 Aligned_cols=224 Identities=15% Similarity=0.180 Sum_probs=159.4
Q ss_pred CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc
Q 018293 5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV 84 (358)
Q Consensus 5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~ 84 (358)
|.+--++++-..+ +++.++........++...........+|++|++- +...++++-.+|.+++||..-
T Consensus 183 ~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGnlyly~~~~ 251 (636)
T KOG2394|consen 183 PKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG------SDSLFLVAHASGNLYLYDKEI 251 (636)
T ss_pred CCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEeC------CCceEEEEEecCceEEeeccc
Confidence 4555566676655 66666665533344455554455567789999973 555667777899999998743
Q ss_pred ccCcCc--eeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec
Q 018293 85 IDEVQP--HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE 162 (358)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 162 (358)
...... ...+...+... ....+......++..+.--++.|+..+|+|| +.+||+.+.||.++|+|..+.+++..++
T Consensus 252 ~~~~t~p~~~~~k~~~~f~-i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 252 VCGATAPSYQALKDGDQFA-ILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred cccCCCCcccccCCCCeeE-EeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHHH
Confidence 222111 11111111110 0011111222444444445669999999998 7799999999999999999999888888
Q ss_pred ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC-----------------------
Q 018293 163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH----------------------- 219 (358)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----------------------- 219 (358)
..-+...|++|+||| +++++|++|-.|.||.+...+.+..-.+|.+.|..++|+|.
T Consensus 330 SYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~ 408 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHD 408 (636)
T ss_pred hhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcc
Confidence 777889999999999 99999999999999999998888878889999999999841
Q ss_pred ------------------------CCCeEEEEecCCeEEEEEcccCC
Q 018293 220 ------------------------AEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 220 ------------------------~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
-.+.|.+.+.|-.+.+||+....
T Consensus 409 ~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 409 FEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 02356677889999999997653
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1e-15 Score=133.34 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=174.8
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC--
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-- 135 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 135 (358)
.+.||+|+++++... +..|.||...++++.. .+.+|..++..+.+.|...
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---------------------------~l~~~~a~l~s~~~~~~~~~~ 72 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---------------------------SLEDHTAPLTSVIVLPSSENA 72 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---------------------------hcccccCccceeeecCCCccc
Confidence 345799999888776 5699999998876654 5668999999999988755
Q ss_pred cEEEEEEcCCeEEEEECCCCceeeeecccccceee---------------------------------------------
Q 018293 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA--------------------------------------------- 170 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~--------------------------------------------- 170 (358)
.++++++.||.|++||...+.+++++..+ .++..
T Consensus 73 ~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 73 NYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred eEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 47789999999999999988777665421 11111
Q ss_pred --------------EEEcCCCCcEEEEEeCCCcEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEEecCCe
Q 018293 171 --------------VAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLEDGT 232 (358)
Q Consensus 171 --------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 232 (358)
+.+++.+ . +.....+..+.+|+....... .....|...+++.+++| .+++++++..||.
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~g-e-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr 228 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSG-E-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR 228 (792)
T ss_pred cchhhhhhhcCCccEEEcCCc-e-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc
Confidence 2222222 1 111222334555655543311 01112444589999999 5679999999999
Q ss_pred EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEE
Q 018293 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 312 (358)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 312 (358)
|.+|.--..... ......++-|..+|+++.|+++| .+|++|+..|.+.+|.+.++++ +.++.-.++|..+.
T Consensus 229 I~vw~d~~~~~~-----~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k---qfLPRLgs~I~~i~ 299 (792)
T KOG1963|consen 229 ILVWRDFGSSDD-----SETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK---QFLPRLGSPILHIV 299 (792)
T ss_pred EEEEeccccccc-----cccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc---ccccccCCeeEEEE
Confidence 999976542111 14456778899999999999999 8999999999999999999873 33455568999999
Q ss_pred EcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 313 FSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 313 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
++||+.+ .+....|+.|.+-.+.+.+.
T Consensus 300 vS~ds~~-~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 300 VSPDSDL-YSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred EcCCCCe-EEEEecCceEEEEeccchhh
Confidence 9999994 77788899999998866543
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.75 E-value=7.5e-15 Score=123.56 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=173.9
Q ss_pred CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccccc
Q 018293 7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID 86 (358)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~ 86 (358)
++++++...++. ++.+.|.... ..... ......+ . ..+.|+|||+++++++.||.|.++|+.+.+
T Consensus 5 ~~l~~V~~~~~~----~v~viD~~t~---~~~~~--i~~~~~~-h-----~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~ 69 (369)
T PF02239_consen 5 GNLFYVVERGSG----SVAVIDGATN---KVVAR--IPTGGAP-H-----AGLKFSPDGRYLYVANRDGTVSVIDLATGK 69 (369)
T ss_dssp GGEEEEEEGGGT----EEEEEETTT----SEEEE--EE-STTE-E-----EEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred ccEEEEEecCCC----EEEEEECCCC---eEEEE--EcCCCCc-e-----eEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence 466665544332 8888887764 22211 1111100 0 123468999999999999999999998766
Q ss_pred CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc--
Q 018293 87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-- 164 (358)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-- 164 (358)
.+.... -.....+++++++|..++++...++.+.++|.++.++++.+...
T Consensus 70 ~v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 70 VVATIK----------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp EEEEEE-----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE
T ss_pred EEEEEe----------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc
Confidence 444322 22346789999996544455567899999999999998887532
Q ss_pred -----ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 165 -----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 165 -----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
...+.++..+|..+.++++.-..+.|.+.|....+... .............|+|++.+++++...++.|-++|.
T Consensus 122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence 34567888888884455555556888888877764433 233345667889999976655565666778888887
Q ss_pred ccCCCCC----------------------------------------------CCCCCCccEEEeecCCceeEEEecCCC
Q 018293 239 RTAKSDP----------------------------------------------DSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 239 ~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
.+.+... .....+.+..+.....+ .-+..+|++
T Consensus 202 ~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s 280 (369)
T PF02239_consen 202 KTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS 280 (369)
T ss_dssp TTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-
T ss_pred ccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC
Confidence 6653200 01112233334433344 567779988
Q ss_pred CcEEEEE----eCCCcEEEEecCCCCceeeEecCC-CCceeEEEEEcCCCCeEEEEEccCC-eEEEEEccCCCcccccc
Q 018293 273 PNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNRF 345 (358)
Q Consensus 273 ~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~ 345 (358)
.++.+. ...+.|.++|.++.+ .+..+.. ....+..+.|+++|++++++.-..+ .|.+||..+.+.+.+.-
T Consensus 281 -~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 281 -RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred -ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 677766 445789999999885 3333322 1234889999999998887776655 89999999998877654
No 215
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=125.92 Aligned_cols=168 Identities=18% Similarity=0.244 Sum_probs=136.1
Q ss_pred ccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC------Cceeeeec-ccccceeeEEEcCCCCcEEEEEeCC
Q 018293 115 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA------GKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFD 187 (358)
Q Consensus 115 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d 187 (358)
...+.+|.+.|++|.|+.+ +.+|++|+.|..+++|+++. .+++.... .|...|.|++|.... .++++|..+
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCc
Confidence 3456689999999999999 78999999999999999863 34554443 356899999999877 899999999
Q ss_pred CcEEEEEcccCCCccceeee---cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293 188 RSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264 (358)
Q Consensus 188 g~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (358)
++|.+.|+++.+.+. ...+ .+.|..+..+|. .+.+++.+.++.|.+||.+..... .....+........
T Consensus 127 ~~VI~HDiEt~qsi~-V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~------~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIY-VANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNP------ISLVLPANSGKNFY 198 (609)
T ss_pred ceeEeeecccceeee-eecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCC------CceeeecCCCccce
Confidence 999999999988765 3333 358999999996 679999999999999999976321 22333334456678
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 265 TISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
.+.|+|..+.+|++.+..+-+.+||.+.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeecc
Confidence 8999999889999999999999999875
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.73 E-value=7.5e-16 Score=120.42 Aligned_cols=254 Identities=16% Similarity=0.251 Sum_probs=169.0
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC------------cccEE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH------------TDSVL 126 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~ 126 (358)
+.|...|.+||||..+|.|.++.-...... . ......++.| ...|.
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-e---------------------y~~~t~fqshepEFDYLkSleieEKin 88 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKG-E---------------------YNFQTEFQSHEPEFDYLKSLEIEEKIN 88 (433)
T ss_pred EEeecccceEeecCCCCeEEEeeccccccc-c---------------------eeeeeeeeccCcccchhhhhhhhhhhh
Confidence 344789999999999999999976432210 1 1111122222 35789
Q ss_pred EEecCCCC-CcEEEEEEcCCeEEEEECCCCcee-----------------------------------eee-ccccccee
Q 018293 127 GLAWNKEF-RNILASASADKQVKIWDVAAGKCN-----------------------------------LTL-EHHTDKVQ 169 (358)
Q Consensus 127 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-----------------------------------~~~-~~~~~~v~ 169 (358)
.+.|.+++ ...++..+.|.+|++|.+...... +.+ .+|+..|.
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN 168 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee
Confidence 99998764 336677788999999987532110 011 25788899
Q ss_pred eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 170 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 170 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
++.++.|. ..++++ .|-.|.+|+++-........ ....-|++..|+|...+.++.++..|+|++-|+|..
T Consensus 169 SIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 169 SISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred eeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 99999998 555554 58889999987544322111 233458899999998899999999999999999954
Q ss_pred CCCCC-------CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCceeeEecCCCCc-------
Q 018293 242 KSDPD-------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKAG------- 306 (358)
Q Consensus 242 ~~~~~-------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~------- 306 (358)
..... ........-+..--..|..+.|+++| +++++-.. -+|++||+.. .++ +...+.|..
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~p--v~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKP--VETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCc--ceEEeehHhHHHHHHH
Confidence 21110 00001111112223568899999998 88887543 5799999954 343 333333321
Q ss_pred --------eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 307 --------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 307 --------~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
.-..++|+.++.+ +++|+..+.+++|++..|...
T Consensus 323 lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred HhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcce
Confidence 1345889999985 889999999999997766544
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=117.96 Aligned_cols=286 Identities=16% Similarity=0.271 Sum_probs=176.1
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw 80 (358)
.|||+|+.+++...- ++.+-|... +..|+-...-..+.-++| +.|..++ .....|+.|.+|
T Consensus 15 ~fSp~g~yiAs~~~y------rlviRd~~t-----lq~~qlf~cldki~yieW-------~ads~~ilC~~yk~~~vqvw 76 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY------RLVIRDSET-----LQLHQLFLCLDKIVYIEW-------KADSCHILCVAYKDPKVQVW 76 (447)
T ss_pred eECCCCCeeeeeeee------EEEEeccch-----hhHHHHHHHHHHhhheee-------eccceeeeeeeeccceEEEE
Confidence 589999999998432 444544443 223332111222335677 4565554 556678899999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
++...+ -..........+.+++|+|+|+.+|.+...|-.|.+|.+.+.+...
T Consensus 77 sl~Qpe---------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~- 128 (447)
T KOG4497|consen 77 SLVQPE---------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL- 128 (447)
T ss_pred Eeecce---------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-
Confidence 996322 1123334667899999999988899999999999999998876543
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeC-C-----------------------------------CcEEEEEcccCCCccce
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSF-D-----------------------------------RSVVMKDARISTHSGFK 204 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----------------------------------g~i~i~d~~~~~~~~~~ 204 (358)
++.....+..++|+|+| ++.+.++. | ..+.+||---.-.+. .
T Consensus 129 ~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-a 206 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-A 206 (447)
T ss_pred ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-e
Confidence 22233446788889888 65555443 2 123333321111111 1
Q ss_pred eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC--------------------------------------
Q 018293 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------------------------------------- 246 (358)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------------------------------------- 246 (358)
....-.+..++|+| .++++++|+.|+.+++.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 207 YERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 22234678899999 566999999999988755433221000
Q ss_pred ------C-------------CCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCCCCceeeEecCCCC
Q 018293 247 ------S-------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKA 305 (358)
Q Consensus 247 ------~-------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~ 305 (358)
. ...++........-.+.-++|++|. .+++|-.. -..+-+||++..+...+ -...
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~av---LiQk 361 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLHAV---LIQK 361 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhhhh---hhhc
Confidence 0 0000000111112346678999987 77777543 24589999998874332 3345
Q ss_pred ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 306 ~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
.+|....|+|.... |+.+.....+++|.......+
T Consensus 362 ~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred cceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEE
Confidence 68999999998885 666666678999988654433
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=6.5e-16 Score=139.00 Aligned_cols=228 Identities=18% Similarity=0.238 Sum_probs=165.9
Q ss_pred ceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEE
Q 018293 110 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILL 182 (358)
Q Consensus 110 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (358)
.+...+..+..|...|..++.++....++++|+.||+|++||.+.- +...++......+.++...+.+ +.++
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEE
Confidence 4566777888899999999999886689999999999999998632 2233444356788899999988 7889
Q ss_pred EEeCCCcEEEEEcccCCCccc--------eeeecCC-eeeEEEcCCCCC-eEEEEecCCeEEEEEcccCCCCCCCCCCCc
Q 018293 183 SGSFDRSVVMKDARISTHSGF--------KWAVAAD-VESLAWDPHAEH-SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS 252 (358)
Q Consensus 183 ~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~-i~~~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 252 (358)
+++.||.|.+.++........ .....+. +..-++...... .++.++..+.|..||+++.... -
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-------w 1187 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-------W 1187 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-------H
Confidence 999999999999876321110 0111222 333344443333 7888889999999999987321 1
Q ss_pred cEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC---CeEEEEEc-cCC
Q 018293 253 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKG 328 (358)
Q Consensus 253 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~-~dg 328 (358)
........+.|++++.+|.+ +++++|+..|.+.+||++-+.+.....+..+ .++..+..+|-. ...++++. ..+
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCC
Confidence 12223345789999999988 8999999999999999999987666665544 788888887743 34444444 578
Q ss_pred eEEEEEccCCCcccccccc
Q 018293 329 KLEIWDTLSDAGISNRFSK 347 (358)
Q Consensus 329 ~i~vw~~~~~~~~~~~~~~ 347 (358)
.|.+|++.+|.+-..++..
T Consensus 1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ceeeeecccCcceEEEEcC
Confidence 8999999999766655555
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=2.4e-15 Score=135.45 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=161.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
++++.++++|+.||+|++|+........ ...+....+......+.++...+. ++.+|.+
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~ 1116 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------GSARSELTYSPEGSRVEKVTMCGN-GDQFAVS 1116 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCc--------------------ceeeeeEEEeccCCceEEEEeccC-CCeEEEE
Confidence 5667999999999999999987432221 111112222234567888888888 6689999
Q ss_pred EcCCeEEEEECCCC--c-----eeeeeccc-ccce-eeEEEcCCCCc-EEEEEeCCCcEEEEEcccCCCccc--eeeecC
Q 018293 142 SADKQVKIWDVAAG--K-----CNLTLEHH-TDKV-QAVAWNHHSPQ-ILLSGSFDRSVVMKDARISTHSGF--KWAVAA 209 (358)
Q Consensus 142 ~~dg~v~iwd~~~~--~-----~~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~ 209 (358)
+.||.|++.++... + +.+....+ .+.+ ..-+|...... .++.+..-+.|..||++....... .....+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998752 1 11111111 2233 33344433323 788889999999999987654322 223457
Q ss_pred CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCC--cEEEEEe--CCCc
Q 018293 210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVP--NLLATGS--TDKM 284 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~--~~l~~~~--~dg~ 284 (358)
.|++++.+| ..+.++.|+..|.+.+||+|-. .++... ..+..+++.+..+|-.+ ...++++ ..+.
T Consensus 1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~---------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR---------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred ceeEEEecC-CceEEEEecCCceEEEEEeecC---------ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 799999999 5569999999999999999976 333332 23457788888777543 4555444 4677
Q ss_pred EEEEecCCCCceeeEecC-----------------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 285 VKLWDLSNNQPSCIASRN-----------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 285 i~i~d~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
|.+|++.++....+.... .+.-......+...+. ++.+|+.|+.|+.||....+..
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccc
Confidence 999999987643332222 1111122223333334 6889999999999999876554
No 220
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.72 E-value=7.8e-15 Score=112.39 Aligned_cols=295 Identities=14% Similarity=0.103 Sum_probs=192.4
Q ss_pred cEEEEEEecCCC-------ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCc-eEEecCCCCeEEE
Q 018293 8 AVIVCARNEDDV-------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEI 79 (358)
Q Consensus 8 ~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~v 79 (358)
++|++|...=+. +..++++|+..+.+...+.. -...-.+..+.+.|... -.+|. .|+-+-.+|.|.+
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~-~q~~dts~~~dm~w~~~----~~~g~~~l~~a~a~G~i~~ 99 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDT-LQCTDTSTEFDMLWRIR----ETDGDFNLLDAHARGQIQL 99 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCccce-eeeecccccceeeeeec----cCCccceeeeccccceEEE
Confidence 467777543222 23467777776643322111 11222344556777432 23444 5677778899999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce--
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-- 157 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-- 157 (358)
|..+.........-+ ....-......++.|++. +..++++..+|.+.+-+......
T Consensus 100 ~r~~~~~ss~~L~~l---------------------s~~ki~~~~~lslD~~~~-~~~i~vs~s~G~~~~v~~t~~~le~ 157 (339)
T KOG0280|consen 100 YRNDEDESSVHLRGL---------------------SSKKISVVEALSLDISTS-GTKIFVSDSRGSISGVYETEMVLEK 157 (339)
T ss_pred Eeeccceeeeeeccc---------------------chhhhhheeeeEEEeecc-CceEEEEcCCCcEEEEecceeeeee
Confidence 987643221110000 000001113567888888 56788999999999766555533
Q ss_pred eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-cc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293 158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235 (358)
Q Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 235 (358)
++.++.|.-++....|+...++++.+|+.|+.+..||+|.... +. ....|...|.++.-+|..+.++++|+.|..|++
T Consensus 158 vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 158 VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence 4578999999999999998889999999999999999994442 22 134578899999999988899999999999999
Q ss_pred EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce---eeEecCCCCceeEEEE
Q 018293 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVA 312 (358)
Q Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~ 312 (358)
||.|+-. ++++.-.. .+.|..+.++|.....++.++.-.-.+|.+.+..... .......|.+-...-.
T Consensus 238 ~DtRnm~--------kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 238 LDTRNMG--------KPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred eehhccc--------CccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence 9999752 44444332 3789999999965444455455455778887765433 3444556666666677
Q ss_pred EcCCCCeEEEEEc-cCCeEE-EEEccCCC
Q 018293 313 FSEDSPFVLAIGG-SKGKLE-IWDTLSDA 339 (358)
Q Consensus 313 ~~~~~~~~l~~~~-~dg~i~-vw~~~~~~ 339 (358)
|..... ++|+++ .|+.++ +|-..+++
T Consensus 309 Wd~~~~-~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 309 WDSKDS-FLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccccc-eeeeeeccccceeeeeeeccCC
Confidence 754434 477765 677655 77666554
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.9e-15 Score=127.13 Aligned_cols=213 Identities=15% Similarity=0.029 Sum_probs=132.0
Q ss_pred CccccCCCceEEecC---CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGS---MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
+++|||||+.|+..+ .+..|.+|++.+++... ... ..+.+....|+|+|
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------------------------l~~---~~~~~~~~~~SPDG 254 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------------------VAS---FPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------------------ccC---CCCCcCCeEECCCC
Confidence 345599999998653 34578999987543211 111 22234467999996
Q ss_pred CcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEE--EcccCCCccceeeecC
Q 018293 135 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMK--DARISTHSGFKWAVAA 209 (358)
Q Consensus 135 ~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~ 209 (358)
..++++.+.+| .|.+||+++++...... +...+....|+|++ +.|+..+ .++...+| |+.+++... ......
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCC
Confidence 54555555555 58899998886544333 44567889999999 5555444 44555555 555443322 222334
Q ss_pred CeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc---
Q 018293 210 DVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--- 284 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--- 284 (358)
......|+|++..+++++..+ ..|.+||+.++. ...+.. ........|+||| .+|+.++.++.
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~ 399 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSV 399 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceE
Confidence 456789999776544544443 358888987652 122221 1223467899999 77777776654
Q ss_pred EEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
+.++++.... ...+..|.+.+...+|+|-
T Consensus 400 l~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 400 LNLVSTDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEECCCCC---eEECccCCCCcCCcccCCC
Confidence 6777775544 4445567778888899873
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.72 E-value=2.4e-13 Score=114.74 Aligned_cols=276 Identities=15% Similarity=0.169 Sum_probs=168.7
Q ss_pred CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC----CCeEEEEEcccc-cCcCceee
Q 018293 19 VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVI-DEVQPHVI 93 (358)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~-~~~~~~~~ 93 (358)
.+.|.++.++...+ .+...........|..+ +++|++++|.+... +|.|..|+++.. ..+..
T Consensus 12 ~~gI~~~~~d~~~g---~l~~~~~~~~~~~Ps~l-------~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~--- 78 (345)
T PF10282_consen 12 GGGIYVFRFDEETG---TLTLVQTVAEGENPSWL-------AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL--- 78 (345)
T ss_dssp STEEEEEEEETTTT---EEEEEEEEEESSSECCE-------EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---
T ss_pred CCcEEEEEEcCCCC---CceEeeeecCCCCCceE-------EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---
Confidence 35566666666665 44433333233333333 33899999988766 579999998753 11111
Q ss_pred cCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE-EcCCeEEEEECCC-Cceeee---ec------
Q 018293 94 LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAA-GKCNLT---LE------ 162 (358)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~-~~~~~~---~~------ 162 (358)
.............++++|++. +|+++ ..+|.|.++++.. +..... +.
T Consensus 79 ---------------------~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 79 ---------------------LNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp ---------------------EEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred ---------------------eeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCC
Confidence 111111334567889999955 55555 4689999999986 433222 21
Q ss_pred ----ccccceeeEEEcCCCCcEEEEE-eCCCcEEEEEcccCCC-cc----ceeeecCCeeeEEEcCCCCCeEEEEecCCe
Q 018293 163 ----HHTDKVQAVAWNHHSPQILLSG-SFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGT 232 (358)
Q Consensus 163 ----~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 232 (358)
.......++.|+|++ +++++. -....|.+|++..... +. ...........+.|+|++...+++.-.++.
T Consensus 137 ~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp STTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred cccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 123456789999999 555554 4456899999977652 21 122345668899999977766666777899
Q ss_pred EEEEEcccCCCCCCCCCCCccEEEeec------CCceeEEEecCCCCcEEEE-EeCCCcEEEEecC--CCCceeeEecCC
Q 018293 233 IKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLS--NNQPSCIASRNP 303 (358)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~~~~~~~~~ 303 (358)
|.+|++...... .......... ......|+++|++ ++|++ ....+.|.+|++. +++...+.....
T Consensus 216 v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 216 VSVFDYDPSDGS-----LTEIQTISTLPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp EEEEEEETTTTE-----EEEEEEEESCETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE
T ss_pred EEEEeecccCCc-----eeEEEEeeeccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceEEEEEEeC
Confidence 999999832110 0122222211 1257889999999 55555 4457789999993 345444444433
Q ss_pred CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
.......++++|+|++++++.-.++.|.+|++.
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 334478999999999877777788899999885
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.8e-17 Score=125.88 Aligned_cols=233 Identities=16% Similarity=0.229 Sum_probs=162.9
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.|||+|+++|+++.- .+.|-|..+.+..+-+. --+.|.-+.|..+....|.
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~----------------------------cldki~yieW~ads~~ilC 65 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL----------------------------CLDKIVYIEWKADSCHILC 65 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHH----------------------------HHHHhhheeeeccceeeee
Confidence 469999999999865 77788887655443222 2356888899988666677
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
....|+.|.+|++...+-...+.....++.+++|+|+|..++.+...+-.|.+|.+.+..... ..-....+..++|+|+
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD 144 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC
Confidence 778899999999998888888988889999999999998888888999999999998876544 2223345688999996
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
+. +.+..+.-.....+.+... .....+..+...+-..+.+.|+||| +.|+ +||-.-.- .+.
T Consensus 145 g~-f~ai~sRrDCkdyv~i~~c------~~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~ 205 (447)
T KOG4497|consen 145 GQ-FCAILSRRDCKDYVQISSC------KAWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVY 205 (447)
T ss_pred Cc-eeeeeecccHHHHHHHHhh------HHHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eee
Confidence 54 5555543221111111110 0013344455555667899999998 6655 45533221 111
Q ss_pred ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
..+ -.-.+..+.|+|.++ +++.|+.|+.+++.+--+.+...+
T Consensus 206 aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 206 AYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred eee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhh
Confidence 111 123577899999999 599999999999988777665544
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.9e-15 Score=127.09 Aligned_cols=212 Identities=15% Similarity=0.091 Sum_probs=129.8
Q ss_pred CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
+++|+|||+.|+..+.+ ..|++||+.+++... +..+.+...+.+|+|+|
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----------------------------VASFRGINGAPSFSPDG 259 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------------------------eccCCCCccCceECCCC
Confidence 44569999999887643 469999987543211 11223344578999996
Q ss_pred CcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-CCCc--EEEEEcccCCCccceeeecC
Q 018293 135 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAA 209 (358)
Q Consensus 135 ~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~ 209 (358)
..++++.+.+| .|.+||+.+++.. .+..+.......+|+|++ +.++.++ .+|. |.++|+.+++... ......
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEE-eecCCC
Confidence 65556666666 5999999887653 444455556778999999 5555444 5555 5556665554322 222233
Q ss_pred CeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-C--Cc
Q 018293 210 DVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D--KM 284 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d--g~ 284 (358)
.....+|+|++..++++...++ .|.+||+.++. .. .+. +........|+|+| ++++..+. . +.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~~-~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~ 404 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------VR-TLT-PGSLDESPSFAPNG-SMVLYATREGGRGV 404 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------eE-ECC-CCCCCCCceECCCC-CEEEEEEecCCceE
Confidence 4557899997764444433333 68999987652 11 222 22234567899999 55554443 2 34
Q ss_pred EEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293 285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315 (358)
Q Consensus 285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 315 (358)
|.++++.... ...+..+.+.+...+|+|
T Consensus 405 L~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 7778875543 333444455667777876
No 225
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=4.4e-14 Score=111.59 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=118.5
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE--
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-- 141 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-- 141 (358)
+.++|+++-.+ .|+|||+...+.+..+... ..+...+.++++++. +.++|--
T Consensus 96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~------------------------~~n~~gl~AlS~n~~-n~ylAyp~s 149 (391)
T KOG2110|consen 96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETT------------------------PPNPKGLCALSPNNA-NCYLAYPGS 149 (391)
T ss_pred ccceEEEEEcc-cEEEEecccceeehhhhcc------------------------CCCccceEeeccCCC-CceEEecCC
Confidence 45677777655 4999999876665543221 136677888888887 4466543
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc-EEEEEcccCCCccceee--ecCCeeeEEEcC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWA--VAADVESLAWDP 218 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~ 218 (358)
...|.|.+||..+-+.+..+..|.+++.+++|+++| .++++++..|+ |+++.+..++....... ....|.+++|+|
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 235899999999999999999999999999999999 99999999997 78999988877654332 235688999999
Q ss_pred CCCCeEEEEecCCeEEEEEcccCC
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
+ ..++++.+..++|.+|.+....
T Consensus 229 d-s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 229 D-SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred C-CCeEEEecCCCeEEEEEecccc
Confidence 5 4588899999999999998754
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.3e-14 Score=124.25 Aligned_cols=205 Identities=11% Similarity=0.101 Sum_probs=127.0
Q ss_pred CCcccEEEEecCCCCCcEEEEEE---cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 194 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d 194 (358)
.+...+...+|+|+| +.|+..+ .+..+.+|++.+++... +......+....|+|+|..++++.+.+| .|.+||
T Consensus 196 ~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 196 RSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred cCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 356689999999995 4555443 23579999998875433 2223334557899999944444555555 488899
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE--EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+.+++... .......+....|+|++..++++...++...+| |+..+ ....+..+........|+|+|
T Consensus 274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG 342 (429)
T ss_pred CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------CeEEeecCCCCccCEEECCCC
Confidence 98765443 233345678899999766555555555555555 44433 223333334445678999999
Q ss_pred CcEEEEEeC-C--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe---EEEEEccCCCccccc
Q 018293 273 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISNR 344 (358)
Q Consensus 273 ~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~~~ 344 (358)
++|+..+. + ..|.+||+.+++...+. .. .......|+|||++ ++.++.++. +.++++. |....++
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~--~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLT--DT--FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeC--CC--CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEEC
Confidence 56555443 3 34888999888643222 11 12346789999996 555555543 6777773 4444443
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-14 Score=125.57 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=133.1
Q ss_pred CCcccEEEEecCCCCCcEEEEEEc---CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD 194 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d 194 (358)
.|...+.+.+|+|+| +.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+|..++++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 577889999999995 56665543 468999999888653 344456677889999999555566676665 66778
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+.++.... ...+........|+|++..++++...+| .|+++|+..+ ....+..+...+....|+|+|
T Consensus 277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----------NPRRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----------CeEEeecCCCcccCeEECCCC
Confidence 87665433 3334445677899997765555554444 5777776643 223333344556778999999
Q ss_pred CcEEEEEeCC---CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCCCc
Q 018293 273 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG 340 (358)
Q Consensus 273 ~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~ 340 (358)
+.|+..+.+ ..|.+||+.++.. ..+.. ...+....|+|||+.++++.... ..+.++|+..+..
T Consensus 346 -~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 346 -DLIAFTKQGGGQFSIGVMKPDGSGE---RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CEEEEEEcCCCceEEEEEECCCCce---EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 666554433 3588888866542 12221 22466789999999765555433 2578888865443
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.2e-14 Score=123.49 Aligned_cols=200 Identities=16% Similarity=0.162 Sum_probs=126.7
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
.+...+.+.+|+|+| +.|+..+.+ ..|.+||+.+++... +......+....|+|++..++++.+.+|...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 466788999999995 566655532 359999999886543 333345567899999995555567888887776654
Q ss_pred --cCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 197 --ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 197 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
.+.. .....+........|+|++..+++++..+|...+|.+.... .....+..+........|+|+| +
T Consensus 271 ~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~ 340 (427)
T PRK02889 271 ADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K 340 (427)
T ss_pred CCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence 3332 22223344456789999877555565556777777765321 1122222222334567899999 6
Q ss_pred EEEEEeCCC---cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEc
Q 018293 275 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT 335 (358)
Q Consensus 275 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~ 335 (358)
+|+..+.++ .|.+||+.+++...+ ... .......|+|||++++++....|. +.+.++
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~l---t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTAL---TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEc---cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 766655443 599999988764222 221 234578999999976666555544 555555
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=4.9e-15 Score=113.46 Aligned_cols=157 Identities=14% Similarity=0.280 Sum_probs=105.6
Q ss_pred eeEEEcCCCCcEEEEEeC---------CCcEEEEEcccCCCc--cceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEE
Q 018293 169 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGF 236 (358)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~ 236 (358)
..+.|+++|..+++.... -+...+|-++..... .......++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 357899999554444441 134556665443322 2222345579999999977654444 4467899999
Q ss_pred EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC---CCcEEEEecCCCCceeeEecCCCCceeEEEEE
Q 018293 237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313 (358)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 313 (358)
|++. ..+..+. ...++.+.|+|+| ++|++++. .|.|.+||.++.+ .+.... | ..++.++|
T Consensus 89 d~~~----------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~-~~~t~~~W 151 (194)
T PF08662_consen 89 DVKG----------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-H-SDATDVEW 151 (194)
T ss_pred cCcc----------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-c-CcEEEEEE
Confidence 9962 4555553 4677899999999 78887764 4679999999766 343333 3 34789999
Q ss_pred cCCCCeEEEEEcc-----CCeEEEEEccCCCcccc
Q 018293 314 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGISN 343 (358)
Q Consensus 314 ~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~ 343 (358)
+|+|++++.+.+. |+.++||+.. |+.+.+
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999985544443 7889999985 555543
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.8e-14 Score=124.28 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=127.7
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 194 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d 194 (358)
.+...+.+.+|+|+ ++.|+..+.+ ..|.+||+.+++... +........+..|+|+|..++++.+.+| .|++||
T Consensus 201 ~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 46678999999999 5566666533 469999998876533 3333445567899999955556666666 589999
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+.+++... ...+.......+|+|++..++++...+|. |+++|+.++ . ...+..+.......+|+|+|
T Consensus 279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~-~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S-AERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence 98766433 23333445678999976655555555555 555555543 1 22222233344578999999
Q ss_pred CcEEEEEeCC-C--cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC--CeEEEEEccC
Q 018293 273 PNLLATGSTD-K--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS 337 (358)
Q Consensus 273 ~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~ 337 (358)
+.|+..+.+ + .|.+||+.+++.. .+. +........|+|||++++++.... +.|.++++..
T Consensus 348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~---~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 -KKIAMVHGSGGQYRIAVMDLSTGSVR---TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -CEEEEEECCCCceeEEEEECCCCCeE---ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 666654433 2 5999999887643 222 122345679999999766555433 3577777754
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=7.6e-15 Score=116.64 Aligned_cols=214 Identities=13% Similarity=0.140 Sum_probs=158.0
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
...|++|-.+|.+++|....+..... ....+. -...+..+.-++.....+++|+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss-----------------------~l~~la-~g~g~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSS-----------------------KLIKLA-TGPGLYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccc-----------------------cceeee-cCCceeeeccCCCCCceEecCchh
Confidence 34677888899999999875443211 011111 125567777777767788889999
Q ss_pred --CeEEEEECCCCceeeeeccc---------ccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCCccce-eeecCC
Q 018293 145 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFK-WAVAAD 210 (358)
Q Consensus 145 --g~v~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~ 210 (358)
..+.+||++..+.+.+-+.- .-.++++.|.+. . ..|++++.-+.+++||.+.++..... .-.+.+
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence 89999999988655544321 124577888876 4 78999999999999999976654333 345788
Q ss_pred eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293 211 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 211 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~ 290 (358)
++++...| +++.+++|..-|.+..||++.++ .....+.+..+.|+++..+|.. .++++++-|..++|+|+
T Consensus 250 is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 250 ISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI 319 (412)
T ss_pred ceeeeecC-CCcEEEEecccchhheecccCce--------eeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence 99999999 56799999999999999999872 2333477888999999999987 89999999999999999
Q ss_pred CCCCceeeEecCCCCceeEEEEEcCC
Q 018293 291 SNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
.+.+++..... ...++++-+.++
T Consensus 320 ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhh---hccccEEEecCC
Confidence 99764332222 234666666543
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.3e-14 Score=122.73 Aligned_cols=213 Identities=12% Similarity=0.072 Sum_probs=131.8
Q ss_pred CccccCCCceEEecCC---CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
+++|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+|+|
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------------LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------------EeecCCCcccCcEECCCC
Confidence 3445999999887653 468999999754321 112345567788999996
Q ss_pred CcEEEEEEcCCe--EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-CCC--cEEEEEcccCCCccceeeecC
Q 018293 135 RNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAA 209 (358)
Q Consensus 135 ~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~ 209 (358)
..++++.+.++. |.+||+.+++. ..+..+........|+|++ +.++..+ .+| .|.++|+..++... ......
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~ 334 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG 334 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC
Confidence 656667776665 77778887765 4455466667789999999 5555544 444 57777876554433 222345
Q ss_pred CeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC-----
Q 018293 210 DVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD----- 282 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----- 282 (358)
.+....|+|++..++++.... ..|.+||+... . ...+. ....+..+.|+|+|..++++....
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---------~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---------G-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---------c-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 567789999776444444333 36778887543 1 12221 223467789999994334444333
Q ss_pred CcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 404 ~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 404 PKLYTVDLTGRNE---REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEEEEECCCCce---EEcc-CCCCccCcccCCC
Confidence 2578888876653 2222 2334566677763
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-15 Score=122.90 Aligned_cols=255 Identities=19% Similarity=0.234 Sum_probs=184.4
Q ss_pred ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcE
Q 018293 59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNI 137 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~ 137 (358)
+.|+..|..|++|+.|..|.+||........ ....+|...|..-.|-|.. ..-
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--------------------------~f~SGH~~NvfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--------------------------SFESGHCNNVFQAKFIPFSGDRT 201 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCccc--------------------------ccccccccchhhhhccCCCCCcC
Confidence 4568999999999999999999997544332 2334799999988888753 347
Q ss_pred EEEEEcCCeEEEEECCC-Cce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee---ecC--
Q 018293 138 LASASADKQVKIWDVAA-GKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAA-- 209 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~-- 209 (358)
+++++.||.|++=.+.. +.+ ...+..|.++|.-++.-|+.+..|.+++.|+.+.-+|++.......... ...
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred ceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 89999999999877643 222 3455679999999999999999999999999999999998765432221 122
Q ss_pred -CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE------eecCCceeEEEecCCCCcEEEEEeCC
Q 018293 210 -DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL------HAHDKAVCTISYNPLVPNLLATGSTD 282 (358)
Q Consensus 210 -~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~d 282 (358)
....++.+|.+.+.+++|+.|-.+++||.+......... .+..+ ......|++++++.++..+| +.-.|
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnD 357 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG---VLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYND 357 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc---hhhhcCCccccccCcccceeEEecCCcccee-eeecc
Confidence 467899999888899999999999999998764322111 11111 12345699999998874554 45567
Q ss_pred CcEEEEecCCCCc-----------eeeEecCCCCc--eeEEEEE-cCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 283 KMVKLWDLSNNQP-----------SCIASRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 283 g~i~i~d~~~~~~-----------~~~~~~~~~~~--~v~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
-.|+++.-..+.. .....+.+|.. .|..+-| -|..+| +++|+.=|.|.||+-.+++.+.-+
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHh
Confidence 7899995443221 11222556643 4666655 577775 888998899999999888876533
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.1e-14 Score=123.54 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=126.2
Q ss_pred CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
+++|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|+|
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------------------------VANFKGSNSAPAWSPDG 251 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCC
Confidence 34559999999876643 469999997543211 11123445688999996
Q ss_pred CcEEEEEEcCCeEEEEEC--CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc--cCCCccceeeecCC
Q 018293 135 RNILASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAAD 210 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 210 (358)
..++++.+.+|...+|.+ ..+. ...+..+........|+|+|..+++++..+|...+|.+. ++.... .......
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~ 329 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSY 329 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCC
Confidence 555557788888777654 4443 445554555567789999994444444455677777654 332222 1112233
Q ss_pred eeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--E
Q 018293 211 VESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--V 285 (358)
Q Consensus 211 i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i 285 (358)
.....|+|++. .++..+.++ .|.+||+.++. . ..+.. ........|+|++..++++....|. +
T Consensus 330 ~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~---------~-~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 330 NTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ---------V-TALTD-TTRDESPSFAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred cCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC---------e-EEccC-CCCccCceECCCCCEEEEEEecCCCEEE
Confidence 45678999766 555444333 69999997752 1 12221 1234678999999444444444443 5
Q ss_pred EEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
.+.++.... ...+..+.+.+...+|+|-
T Consensus 398 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 398 AAVSSDGRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence 555663322 2333345566777788874
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.8e-14 Score=117.57 Aligned_cols=196 Identities=16% Similarity=0.246 Sum_probs=144.3
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
..++++.-...++ .++....|.-++++.|..+..+......++++..++-. .+|++|+.+|.|.+||.++........
T Consensus 137 RDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 137 RDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred ccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeee
Confidence 3444443323344 44445678889999999998888777899999999988 899999999999999999876543222
Q ss_pred e------e-----cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC-
Q 018293 206 A------V-----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP- 273 (358)
Q Consensus 206 ~------~-----~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~- 273 (358)
. + ...|+++.|+.+ +-.+++|+.+|.+.|||++..+ ..+..-++..-+|..+.|.+.+.
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred cccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCC
Confidence 1 1 124999999984 6689999999999999999872 22333344467899999987643
Q ss_pred cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 274 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
..+++ .....++|||-.++++... .. ....++.+++-|++. ++.++-.++.+..|=+..
T Consensus 286 ~~v~S-~Dk~~~kiWd~~~Gk~~as--iE-pt~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 286 NKVVS-MDKRILKIWDECTGKPMAS--IE-PTSDLNDFCFVPGSG-MFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEe-cchHHhhhcccccCCceee--cc-ccCCcCceeeecCCc-eEEEecCCCcceeEEccc
Confidence 34444 4456799999999985333 33 235599999999988 688888888887776654
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.5e-14 Score=117.25 Aligned_cols=243 Identities=14% Similarity=0.176 Sum_probs=163.5
Q ss_pred cccCCCceE-EecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc--ccEEEEecCCCCCc
Q 018293 60 KDREKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRN 136 (358)
Q Consensus 60 ~~s~~~~~l-~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~ 136 (358)
..+|||+|+ |+|..-..|++||+.....- +..|. ..|.-.-.+.| -.
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanLSLK-----------------------------FERhlDae~V~feiLsDD-~S 107 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANLSLK-----------------------------FERHLDAEVVDFEILSDD-YS 107 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEcccceee-----------------------------eeecccccceeEEEeccc-hh
Confidence 348999986 67888999999999642211 11222 23444444444 44
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 216 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 216 (358)
.++--..|.+|.+... -|.. ..++ -+..-..++++.-... |+.++....|+-++++.+..+.......+.++++..
T Consensus 108 K~v~L~~DR~IefHak-~G~h-y~~R-IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAK-YGRH-YRTR-IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred hheEeecCceeeehhh-cCee-eeee-cCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeee
Confidence 4555566777776542 2211 1111 1233456667655523 555666778888999999888766666789999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-----CceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293 217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----KAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
++- ..++++|+.+|.|.+||.+.......... ......|. ..|+++.|+.+| -.+++|+.+|.+.|||++
T Consensus 184 n~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~---~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 184 NEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDA---ASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred cCc-cceEEecccCceEEEecchhhhhheeeec---ccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcc
Confidence 994 45999999999999999998733211110 01112233 349999999887 899999999999999999
Q ss_pred CCCceeeEecCCCCceeEEEEEcCCCC-eEEEEEccCCeEEEEEccCCCcccc
Q 018293 292 NNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
..++..+. -++..-+|..+.|.+.+. ..+++ .....++|||-.+|+....
T Consensus 259 a~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 259 ASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMAS 309 (703)
T ss_pred cCCceeec-ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceee
Confidence 99975543 344567899999977632 23543 4557899999999887643
No 237
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=4.8e-15 Score=127.04 Aligned_cols=291 Identities=19% Similarity=0.297 Sum_probs=203.9
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
+.++|.|+-++.|..- .+++.+......+..+.||- .+-..-...|.+ +|.-.+-++....-.-.+|
T Consensus 30 ~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~-----h~a~~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSP-----HPAKPYWIVSTSNQKAIIW 96 (1081)
T ss_pred eeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--Ccchhcceeccc-----CCCCceeEEecCcchhhhh
Confidence 3578888888888443 68888888888888888884 233444667754 3444455555445555689
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL 159 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~ 159 (358)
++... ........+.+|..+|+.+-|+|.....+++++.|-.+..||+++. .++.
T Consensus 97 nlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y 152 (1081)
T KOG0309|consen 97 NLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY 152 (1081)
T ss_pred hhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence 98632 2234455677999999999999998889999999999999999875 3455
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
.+..-......++|+-..+. +++.+....|++||.+.+.... ...++...+..++|...-...+.+++.||+|++||.
T Consensus 153 s~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 55555566788999988744 5566778889999999876543 344566778888887766667899999999999999
Q ss_pred ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC-cEEEEecCCC--------CceeeEecCCCCceeE
Q 018293 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-MVKLWDLSNN--------QPSCIASRNPKAGAVF 309 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~d~~~~--------~~~~~~~~~~~~~~v~ 309 (358)
.+... ..........+|..-++.|-|+.+.+.-...+ .+.+++.++. .+..+..+.+|...|.
T Consensus 232 ~kSt~--------e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 232 SKSTT--------ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred ccccc--------ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 87632 22223334566777777776644443322222 3334433321 2346888999999888
Q ss_pred EEEEcCC---------CCeEEEEEccCCeEEEEEccC
Q 018293 310 SVAFSED---------SPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 310 ~~~~~~~---------~~~~l~~~~~dg~i~vw~~~~ 337 (358)
...|-.. ..+.|++-+.|..+++|-+.+
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 7777542 245799999999999998864
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=6.5e-12 Score=97.68 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=116.8
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECC-CCceeeeecccccceeeEEEcCCCCcEEEE--EeCCCcEEEEEccc
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLS--GSFDRSVVMKDARI 197 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~ 197 (358)
...+|.++.+.++ .|++.- .+.|.||... +-+.++.+.....+=--++..|.....+++ |-.-|.|++-|+..
T Consensus 93 f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 5678999999977 455544 5789999987 445555554322222233344433233333 45679999999987
Q ss_pred CCC--ccceeeecCCeeeEEEcCCCCCeEEEEecCCe-EEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecCCC
Q 018293 198 STH--SGFKWAVAADVESLAWDPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLV 272 (358)
Q Consensus 198 ~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~ 272 (358)
.+. ......|.+.|.|++.+.+ +.++|+++..|+ |+|||..++ ..+..+.. ....|.+++|+|+.
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc
Confidence 765 3556789999999999995 559999999997 899999998 55655543 34679999999998
Q ss_pred CcEEEEEeCCCcEEEEecCCC
Q 018293 273 PNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~~~~ 293 (358)
.+|+++++.|++.||.++..
T Consensus 239 -s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 239 -SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -cEEEEEcCCCeEEEEEeecC
Confidence 89999999999999998763
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.5e-12 Score=113.43 Aligned_cols=206 Identities=14% Similarity=0.129 Sum_probs=122.9
Q ss_pred CCcccEEEEecCCCCCcEEEEEE-cCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASAS-ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD 194 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d 194 (358)
.+...+.+..|+|+|. .|+..+ .++ .|.+||+.+++... +...........|+|++..++++.+.+|. |.++|
T Consensus 215 ~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 215 RSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 3566788999999955 555443 333 58888998876432 22223334578999999555556677775 77778
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+.+++... ...+.......+|+|++..++++...++. |.++|+.++ . ...+..........+|+|+|
T Consensus 293 l~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~-~~~Lt~~g~~~~~~~~SpDG 361 (448)
T PRK04792 293 IATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------K-VSRLTFEGEQNLGGSITPDG 361 (448)
T ss_pred CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEEecCCCCCcCeeECCCC
Confidence 87665433 22334456778999987756566655554 555566544 2 22222222233457899999
Q ss_pred CcEEEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEccCCCcccc
Q 018293 273 PNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGISN 343 (358)
Q Consensus 273 ~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~~~~~~~~~ 343 (358)
..++++...++. |.++|+.+++...+ ... .......|+|+|+.++++...+|. +++++. ++.....
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~l---t~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVL---TST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEc---cCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 444444444443 56678877763222 211 112245799999976666655554 666776 4444333
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=2.8e-13 Score=106.30 Aligned_cols=269 Identities=13% Similarity=0.200 Sum_probs=167.5
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceE---eece--------eecCCcccceeeecCCccccCCCce
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLY---VHHH--------IIIPAFPLCMAWLDCPLKDREKGNF 67 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~s~~~~~ 67 (358)
+.|.-.|..|++|...+ +|.+|+...... -+.+ ..|+ ..+...+..++|++- .+...
T Consensus 31 vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-----~n~a~ 100 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-----GNLAE 100 (433)
T ss_pred EEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-----CCccE
Confidence 35778899999997776 777776554321 1111 1222 123344567888652 34556
Q ss_pred EEecCCCCeEEEEEcccccCcCceeecC-Ccccc-----cccccc---cCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 68 MAVGSMEPAIEIWDLDVIDEVQPHVILG-GIDEE-----KKKKKS---KKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~-----~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
++..+.|.+|++|.+...........+. ..+.. ...... ...........-.+|.--|++|+++.| ...+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-~Et~ 179 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-KETF 179 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-cceE
Confidence 7777789999999987543322100000 00000 000000 011112222234579999999999999 5455
Q ss_pred EEEEcCCeEEEEECCCCce---eeeec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--------
Q 018293 139 ASASADKQVKIWDVAAGKC---NLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-------- 202 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~---~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------- 202 (358)
+++ .|=.|.+|+++--.. +-.++ ....-|++..|+|...+.++-++..|+|++.|++......
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 554 578899999874322 11222 2345688999999888899999999999999998432110
Q ss_pred --------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC-------------
Q 018293 203 --------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------- 261 (358)
Q Consensus 203 --------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------- 261 (358)
.....-..|..+.|++. ++++++- .--+|++||+... .+++..++.|..
T Consensus 259 pedp~~rsffseiIsSISDvKFs~s-GryilsR-Dyltvk~wD~nme--------~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHS-GRYILSR-DYLTVKLWDLNME--------AKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccC-CcEEEEe-ccceeEEEecccc--------CCcceEEeehHhHHHHHHHHhhccc
Confidence 00112245888999995 4466654 3368999999665 266666666631
Q ss_pred --ceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 262 --AVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 262 --~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
.-..++|+.++ .+++||+....+++|+...
T Consensus 329 IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 329 IFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred hhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence 12457888877 7999999999999999544
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=2.1e-13 Score=104.64 Aligned_cols=204 Identities=18% Similarity=0.151 Sum_probs=147.6
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.|++.+..++++..+|.+.+-+... .........+.|..+++...|+....+++.
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~-------------------------~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETE-------------------------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecce-------------------------eeeeecccccccceeeeeeecccCCCceEE
Confidence 3477888899999999998444332 112223366789999999999988788999
Q ss_pred EEEcCCeEEEEECC-CCceeee-ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 140 SASADKQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 140 s~~~dg~v~iwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
+|+.|+.+..||++ .++.+.. .+-|...|.++.-+|..+.++++|+.|-.|++||.|............+.|..+.++
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHH 262 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEec
Confidence 99999999999998 3344443 456889999999999887999999999999999999766655566677999999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEE-EEecCCC
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVK-LWDLSNN 293 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~-i~d~~~~ 293 (358)
|.....+++++.-+-.++-+........ .........|.+-+..-.|.... .+|+|++ .|+.++ +|-.-++
T Consensus 263 p~~~~~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred chhhhHHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccC
Confidence 9765555555555557777777653210 11334455677777777775543 5788765 355544 5544433
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1e-11 Score=104.80 Aligned_cols=265 Identities=12% Similarity=0.190 Sum_probs=153.7
Q ss_pred CcccCCCcEEEEEEecC-CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-CCCeEE
Q 018293 1 MTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAIE 78 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~ 78 (358)
|.++|+++.|.++.... +.+.+..+.++...+ .+............ ||.++.+|++++|+++. .+|.|.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~------p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSS------PCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSC------EEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCC------cEEEEEecCCCEEEEEEccCCeEE
Confidence 46789999999996643 446666666665533 33333322222221 22345589999999886 489999
Q ss_pred EEEcccccCcCcee-ecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-
Q 018293 79 IWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK- 156 (358)
Q Consensus 79 vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~- 156 (358)
+++++....+.... .... ....+. ..........++.|+|++..++++.-....|.+|++....
T Consensus 113 v~~l~~~g~l~~~~~~~~~-------------~g~g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRH-------------EGSGPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp EEEECTTSEEEEEEEEEES-------------EEEESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred EEEccCCcccceeeeeccc-------------CCCCCc-ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence 99998633222111 0000 000000 0011234577899999955444444445689999997654
Q ss_pred -ee--eeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC--ccc--ee------eecCCeeeEEEcCCCCC
Q 018293 157 -CN--LTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGF--KW------AVAADVESLAWDPHAEH 222 (358)
Q Consensus 157 -~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~--~~------~~~~~i~~~~~~~~~~~ 222 (358)
.. ..+. ......+.+.|+|++....++...++.|.++++..... ... .. ........++++|++..
T Consensus 179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 21 1221 23456789999999955556666788999999883221 110 00 01125778999997765
Q ss_pred eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEecC--CCC
Q 018293 223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS--NNQ 294 (358)
Q Consensus 223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~ 294 (358)
++++....+.|.+|++...... ...+..+.......+.++++|+| ++|+++. .++.|.+|++. ++.
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCc
Confidence 5555667889999999533110 13333444444557899999999 6666554 67789999774 554
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.2e-12 Score=112.41 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=124.3
Q ss_pred CccccCCCceEEecCCC-C--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGSME-P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
++.|||||+.|+..+.+ + .|++||+.+++... .... .+.....+|+|+|
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------------------lt~~---~g~~~~~~wSPDG 273 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------------------VTSF---PGINGAPRFSPDG 273 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------------------ecCC---CCCcCCeeECCCC
Confidence 34559999998876532 3 58888886543211 1111 1223467999996
Q ss_pred CcEEEEEEcCCe--EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEEcccCCCccceeeecCC
Q 018293 135 RNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAAD 210 (358)
Q Consensus 135 ~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~ 210 (358)
..++++.+.+|. |.++|+.+++.. .+..+........|+|++..+++++..++. |.++|+.+++..... .....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~ 351 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQ 351 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCC
Confidence 655556677775 777788877643 344455556788999999444455544554 555666655433221 12223
Q ss_pred eeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--EE
Q 018293 211 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VK 286 (358)
Q Consensus 211 i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~ 286 (358)
....+|+|++..++++...++ .|.++|+.++. ...+... .......|+|+|..++++...++. ++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 345789998775555555455 45556666542 1122211 112345799999555555555554 66
Q ss_pred EEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
+++..... ...+..+.+.+...+|+|-
T Consensus 421 ~~~~~G~~---~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 421 AVSIDGRF---KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEECCCCc---eEECcCCCCCcCCCccCCC
Confidence 77764433 3334444556677788873
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=2.7e-12 Score=112.11 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=126.1
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 194 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d 194 (358)
.+...+...+|+|++ ++|+.+..+ ..|.+||+.+++... +..+...+.+++|+|++..++++.+.++ .|.+||
T Consensus 187 ~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 355678899999995 566665543 479999998886543 3334556677999999954555655555 588888
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+.++.... ...+........|+|++..+++++..++ .|+++|+... . ...+..+........|+|++
T Consensus 265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~---------~-~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG---------E-VRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEeecCCCCccCeEECCCC
Confidence 87665332 2223334556789997665555554444 4667776643 2 23344445567788999998
Q ss_pred CcEEEEEeCCC---cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC--eEEEEEc
Q 018293 273 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDT 335 (358)
Q Consensus 273 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vw~~ 335 (358)
.+++.++.++ .|.+||+.++.... +... .......|+|+|++++++...++ .+++.+.
T Consensus 334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~---l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 334 -DLIAFVHREGGGFNIAVMDLDGGGERV---LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred -CEEEEEEccCCceEEEEEeCCCCCeEE---ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 6777666665 78899988765322 2211 22345689999997555554443 3555554
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.8e-12 Score=110.94 Aligned_cols=219 Identities=11% Similarity=0.050 Sum_probs=123.9
Q ss_pred CccccCCCceE---EecCCCC--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC
Q 018293 58 PLKDREKGNFM---AVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK 132 (358)
Q Consensus 58 ~~~~s~~~~~l---~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 132 (358)
+++|||||+.+ ++...+| .|.+.++.+++... +. ...+.....+|+|
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-------------------------lt---~~~g~~~~p~wSP 240 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-------------------------IL---ALQGNQLMPTFSP 240 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------------ee---cCCCCccceEECC
Confidence 56779999752 3444444 56666766443211 11 1233345679999
Q ss_pred CCCcEEEEEEcCC----eEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc--ccC-CCcc
Q 018293 133 EFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA--RIS-THSG 202 (358)
Q Consensus 133 ~~~~~l~s~~~dg----~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~-~~~~ 202 (358)
||..++++...+| .+..|++..+ +...............+|+|||..+++++..+|...+|.+ ... ....
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9655444443333 3455776653 3333333222344678999999444445556776556544 321 1122
Q ss_pred ceeeecCCeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293 203 FKWAVAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 280 (358)
........+....|+|++..++++...+ ..|.+||+.+++ . ..+......+....|+|+|..+++++.
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---------~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---------D-YQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---------e-EEccCCCCCccceEECCCCCEEEEEEC
Confidence 1223334667889999876555555443 368999998762 2 223223345677899999844444444
Q ss_pred C--CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 281 T--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 281 ~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
. ...|+++|+.+++...+. ...+.+...+|+|..
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt---~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIV---IGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEEEee---cCCCcccCceecCCC
Confidence 3 345888899887643332 233456667888753
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=4e-13 Score=102.95 Aligned_cols=152 Identities=18% Similarity=0.327 Sum_probs=100.7
Q ss_pred EEEecCCCCCcEEEEEEc---------CCeEEEEECCC-Cceeeeecc-cccceeeEEEcCCCCcEEEE-EeCCCcEEEE
Q 018293 126 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK 193 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~ 193 (358)
..+.|+|+|..+++.... -+...+|.++. ......+.- ..++|.+++|+|++..++++ |..++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899996655555542 13455555532 233444432 34579999999999444333 4467899999
Q ss_pred EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293 194 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 270 (358)
Q Consensus 194 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 270 (358)
|++. +.+. .-....+..+.|+|++. ++++++ ..|.|.+||.++. +.+.... | ..++.++|+|
T Consensus 89 d~~~-~~i~--~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVKG-KKIF--SFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE-H-SDATDVEWSP 153 (194)
T ss_pred cCcc-cEeE--eecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc-c-CcEEEEEEcC
Confidence 9972 2222 22356788999999655 666654 3578999999965 4444433 3 3478999999
Q ss_pred CCCcEEEEEeC------CCcEEEEecCCC
Q 018293 271 LVPNLLATGST------DKMVKLWDLSNN 293 (358)
Q Consensus 271 ~~~~~l~~~~~------dg~i~i~d~~~~ 293 (358)
+| ++|++++. |..++||+....
T Consensus 154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 DG-RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CC-CEEEEEEeccceeccccEEEEEecCe
Confidence 99 77777654 778999998643
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=6.7e-13 Score=111.28 Aligned_cols=190 Identities=13% Similarity=0.182 Sum_probs=154.3
Q ss_pred CCCcEEEEEEcCCeEEEEECCCCceeeeecc---cccceeeEEEc------C-------------CCCcEEEEEeCCCcE
Q 018293 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWN------H-------------HSPQILLSGSFDRSV 190 (358)
Q Consensus 133 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 190 (358)
.+..++|....||.+++||...++....+.. ..+..++..|. | .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3366899999999999999999887776642 23444555552 1 111467788899999
Q ss_pred EEEEcccCCCcccee--eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293 191 VMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268 (358)
Q Consensus 191 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 268 (358)
.+|++..++...... .|.+.|.++.++.+ -..+.+++.|+.+..|+.... ............+.++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEE
Confidence 999999887765443 57788999999884 458999999999999999987 667777788888999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC-----CCeEEEEEccCCeEEEEEccC
Q 018293 269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 269 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~ 337 (358)
+||+ ..+++++ +.|++||+++.+ .+..+.+|.++|+++.|..+ |.|+|.+...+..+.+|-+..
T Consensus 153 s~D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPDG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9998 7888876 589999999998 68889999999999999887 788888888888899998765
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7.9e-12 Score=109.33 Aligned_cols=200 Identities=13% Similarity=0.121 Sum_probs=123.6
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293 120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 194 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d 194 (358)
.+...+....|+|+| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|..++++.+.+| .|.++|
T Consensus 196 ~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 466778999999995 556554433 368999998886533 3323344567899999944445665565 578889
Q ss_pred cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+.++.... ............|+|++..++++...+| .|+++|+.+++ ...+...........|+|++
T Consensus 274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----------AERVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEeecCCCCccceEECCCC
Confidence 88765433 2333445667899998775566655555 46666765542 11221112233457899998
Q ss_pred CcEEEEEeC-CC--cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC--eEEEEEccC
Q 018293 273 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLS 337 (358)
Q Consensus 273 ~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~ 337 (358)
+.|+..+. ++ .|.++|+.+++...+.. . .......|+|+|+.++++...+| .|.++++..
T Consensus 343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 55555443 33 48889998876433221 1 12224689999997666655444 466666643
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=4.7e-12 Score=112.88 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=139.0
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 85 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 85 (358)
.+..++.+.+.+ .+++++...+....- ..++...... .++-| .++++.-++++|+.-+.|.+|+....
T Consensus 98 e~k~i~l~~~~n-----s~~i~d~~~~~~~~~-i~~~er~~l~-~~~~~-----g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 98 ENKKIALVTSRN-----SLLIRDSKNSSVLSK-IQSDERCTLY-SSLII-----GDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred hcceEEEEEcCc-----eEEEEecccCceehh-cCCCceEEEE-eEEEE-----eccCcEEEEEeccccccEEEEecccc
Confidence 344555665655 777887766521111 1111111101 12222 24678889999999999999998611
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee-eeccc
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-TLEHH 164 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~ 164 (358)
+ . ...+.+|.+.|..+.|+.+ +.++++.+.|.++++|++++.+... ..-+|
T Consensus 166 n--~-------------------------p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 166 N--K-------------------------PIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred C--C-------------------------cceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccccc
Confidence 1 1 0146689999999999999 6799999999999999999987766 66789
Q ss_pred ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
...+..++|.|. .+++++.|.+.++|+....+...........+..++..+ +....++++.|+.+++||+...
T Consensus 218 saRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 218 SARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 999999999996 699999999999997765554433333456688888888 5668899999999999987653
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.8e-12 Score=110.15 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=125.2
Q ss_pred ccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293 59 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 135 (358)
Q Consensus 59 ~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 135 (358)
+.|||||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|.
T Consensus 204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------ITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------ccCCCCCcCCeEECCCCC
Confidence 4459999998876533 368888987543211 111223345689999965
Q ss_pred cEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCCccceeeecCCe
Q 018293 136 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV 211 (358)
Q Consensus 136 ~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i 211 (358)
.++++...+| .|.+||+.+++.. .+..+........|+|++..+++++..+| .|.++|+.+++..... ......
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~ 333 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYN 333 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCc
Confidence 4555666665 5888899887643 34445555677899999944445554444 4666777665533221 112234
Q ss_pred eeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC--cEEE
Q 018293 212 ESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--MVKL 287 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i 287 (358)
....|+|++..++++...++ .|.+||+.++.. ..+. .........|+|+|..++++...++ .+.+
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----------~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----------RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCE----------EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 45789997765444444444 578888876521 1221 1112235689999944444444444 3666
Q ss_pred EecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293 288 WDLSNNQPSCIASRNPKAGAVFSVAFSED 316 (358)
Q Consensus 288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 316 (358)
+++.... ...+..+.+.+...+|+|-
T Consensus 403 ~~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECCCCc---eEECcCCCCCcCCCccCCC
Confidence 7775443 2233334455666777763
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=1.8e-12 Score=101.83 Aligned_cols=202 Identities=16% Similarity=0.230 Sum_probs=142.6
Q ss_pred CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293 46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 125 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 125 (358)
|..+.++.+ +++...|++|-..|++.-+.+.. .-.+.........|...|
T Consensus 68 P~~~~~~~y-------~~e~~~L~vg~~ngtvtefs~se-----------------------dfnkm~~~r~~~~h~~~v 117 (404)
T KOG1409|consen 68 PSPCSAMEY-------VSESRRLYVGQDNGTVTEFALSE-----------------------DFNKMTFLKDYLAHQARV 117 (404)
T ss_pred CCCceEeee-------eccceEEEEEEecceEEEEEhhh-----------------------hhhhcchhhhhhhhhcce
Confidence 444545544 77889999999999999888752 112233344556799999
Q ss_pred EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--CCccc
Q 018293 126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGF 203 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~ 203 (358)
..+-|+.. ..++++.+.|..+.---.+.+..+..+. .....+++.+.- .+...|...|.+..-.+... ..+..
T Consensus 118 ~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 118 SAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred eeEEecCC-ceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceee---EEEEecccccceEEEEEeecCCceEEE
Confidence 99999987 6799999999877655445554332221 111122222211 14455666666666555443 33444
Q ss_pred eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293 204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 283 (358)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 283 (358)
..++...+.+++|.+ .+.++.+|..|..+.+||+... ......+.+|...|..+...+.- +.+.+++.||
T Consensus 193 ~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg 262 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDG 262 (404)
T ss_pred EcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-eeeeeccCCC
Confidence 567889999999999 6679999999999999999866 25567788899999998888766 7889999999
Q ss_pred cEEEEecCC
Q 018293 284 MVKLWDLSN 292 (358)
Q Consensus 284 ~i~i~d~~~ 292 (358)
.|.+|++..
T Consensus 263 ~i~~w~mn~ 271 (404)
T KOG1409|consen 263 GIVVWNMNV 271 (404)
T ss_pred eEEEEeccc
Confidence 999999854
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=4.5e-12 Score=110.69 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=116.3
Q ss_pred CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
++.|+|||++|+.+..+ ..|++||+.++.... +..+...+.+++|+|++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------------------------~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------------------------VASFPGMNGAPAFSPDG 245 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCC
Confidence 34569999999877643 479999987543211 11244556678999996
Q ss_pred CcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE-EEeCCC--cEEEEEcccCCCccceeeecC
Q 018293 135 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-SGSFDR--SVVMKDARISTHSGFKWAVAA 209 (358)
Q Consensus 135 ~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~ 209 (358)
..++++.+.++ .|.+||+.+++.. .+..+........|+|++ +.++ ++..++ .|.++|+.+++... ......
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~ 322 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGG 322 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEEE-eecCCC
Confidence 54555655554 5888898877543 343344455678999999 5554 444444 47777776554322 223445
Q ss_pred CeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---
Q 018293 210 DVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--- 283 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--- 283 (358)
......|+|++. .++.+..++ .|.+||+.++. ...+... .......|+|++ +.|+..+.++
T Consensus 323 ~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~ 389 (417)
T TIGR02800 323 YNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTDT-GLDESPSFAPNG-RMILYATTRGGRG 389 (417)
T ss_pred CccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccCC-CCCCCceECCCC-CEEEEEEeCCCcE
Confidence 567889999765 566555554 78888887641 1122211 223456899998 5555544433
Q ss_pred cEEEEecCC
Q 018293 284 MVKLWDLSN 292 (358)
Q Consensus 284 ~i~i~d~~~ 292 (358)
.+++.+...
T Consensus 390 ~l~~~~~~g 398 (417)
T TIGR02800 390 VLGLVSTDG 398 (417)
T ss_pred EEEEEECCC
Confidence 355555443
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=4.1e-12 Score=107.11 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=136.6
Q ss_pred cEE-EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 136 NIL-ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 136 ~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
+++ ++-..++.|.+.|..+.+.+.++......-..+.|+||+ +++++++.||.|.++|+.+.+... ..........+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceE
Confidence 344 455678999999999999999998655544567899999 788888999999999999988665 34555667889
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL 287 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i 287 (358)
++++++...+++...++.+.++|.++. +.+..+... ...+.++..+|..+.++++--+.+.|.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence 999977755556668999999999987 556655432 2457788888877445555555688988
Q ss_pred EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
.|....+........ .........|+|+++|++++...++.|-++|..+++.+.
T Consensus 155 Vdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 898776654333332 334577899999999988877788899999999877654
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=6.9e-12 Score=108.51 Aligned_cols=209 Identities=9% Similarity=0.044 Sum_probs=124.2
Q ss_pred CcccEEEEecCCCCCc--EEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC----cEEE
Q 018293 121 HTDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVM 192 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~--~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i 192 (358)
....+..-.|+|+|.. ++++...+| .|.+.++.+++... +....+.....+|+|||..++++...+| .+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 3445667799999654 333444444 57777888775433 2223444567899999954444443333 3444
Q ss_pred EEcccCC--Cccceeee-cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293 193 KDARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 269 (358)
Q Consensus 193 ~d~~~~~--~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 269 (358)
|++..+. ........ .......+|+|++..++++...+|...+|.+..... ......+..+...+....|+
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~------g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE------GQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc------ccceEEeccCCCCccceeEC
Confidence 6665431 11112222 234467899998775666665677656665432100 02233344444567789999
Q ss_pred CCCCcEEEEE-eCC--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc--CCeEEEEEccCCCc
Q 018293 270 PLVPNLLATG-STD--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAG 340 (358)
Q Consensus 270 ~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~ 340 (358)
||| +.|+.. ..+ ..|.+||+.+++... +......+....|+|||+.+++++.. ...|+++|+.+++.
T Consensus 336 PDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~---Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 336 PDG-KKIAFCSVIKGVRQICVYDLATGRDYQ---LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCC-CEEEEEEcCCCCcEEEEEECCCCCeEE---ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999 555544 333 359999999887432 22223456778999999976655543 35688889877653
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=5e-12 Score=106.12 Aligned_cols=194 Identities=18% Similarity=0.245 Sum_probs=148.6
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec------CC---
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW------NK--- 132 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~--- 132 (358)
.|...++|....||.+++|+...++....+.-.. . -++..++..| +|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~---------------------~---~s~t~~~~~w~L~~~~s~~k~ 57 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA---------------------S---LSGTCTYTKWGLSADYSPMKW 57 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch---------------------h---ccCcceeEEEEEEeccchHHH
Confidence 4567899999999999999998765443221110 0 1111222222 11
Q ss_pred ----------CCCcEEEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 133 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 133 ----------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
.+..+++-|...|.|.+|++..++....+. .|.+.|.++.++.+- ..|.+++.|+.+..|+......
T Consensus 58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence 124578889999999999999998877774 688999999998887 7899999999999999999888
Q ss_pred ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC-----CCcE
Q 018293 201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL 275 (358)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~~ 275 (358)
..........+.+++.+|++ ..+++++ +.|++||+.+. +.+..+.+|.++|+++.|..+ |..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence 88777778889999999974 4777664 78999999998 889999999999999999876 5344
Q ss_pred EEEEeCCCcEEEEecCC
Q 018293 276 LATGSTDKMVKLWDLSN 292 (358)
Q Consensus 276 l~~~~~dg~i~i~d~~~ 292 (358)
|.+...+..+.+|-++.
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 44455566688887665
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.9e-12 Score=115.36 Aligned_cols=197 Identities=14% Similarity=0.175 Sum_probs=152.6
Q ss_pred ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccc----eeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293 123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK----VQAVAWNHHSPQILLSGSFDRSVVMKDARIS 198 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 198 (358)
+.|....+..+ ...++.++.++.+.+||...+.....+...... ..-+.++++. -++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 88 DWIFGAKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccchhhh-cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEecccc
Confidence 34444555555 557888899999999999888776666532221 1122345555 68899999999999999854
Q ss_pred CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE
Q 018293 199 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 278 (358)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 278 (358)
.......+|++.+..+.|+.+ +.++++.++|.++++|++.+.+ ......-+|...+..++|.|+ .+++
T Consensus 166 n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t 233 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIIT 233 (967)
T ss_pred CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEE
Confidence 444457889999999999995 5599999999999999999873 233466789999999999984 8999
Q ss_pred EeCCCcEEEEecCCCCceeeEecCCC-CceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 279 GSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 279 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
++.|.+.++|+....+. ..+..| ...+..++..++.. +++|++.||.+++|++..
T Consensus 234 ~gedctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 99999999997766552 255555 34688999988877 699999999999999865
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.5e-11 Score=102.70 Aligned_cols=233 Identities=16% Similarity=0.275 Sum_probs=151.2
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC-c
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-N 136 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~ 136 (358)
.+.|+.|..+.|= -..+.+.+|+....+.... . -|...|+.+.++|... .
T Consensus 130 ~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~--------------------------k--l~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 130 VPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH--------------------------K--LSVSGITMLSLSPGPEPP 180 (566)
T ss_pred ccccccchhhhhh-hhcceEEEEecCCccceee--------------------------e--eeccceeeEEecCCCCCc
Confidence 4567888765443 2357899999875332221 1 2677899999998733 3
Q ss_pred EEEE-----EEcCCeEEEEECCCCce-----eeeecccccceeeEEEcCCCCcEEEEEeCC-----------CcEEEEEc
Q 018293 137 ILAS-----ASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----------RSVVMKDA 195 (358)
Q Consensus 137 ~l~s-----~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~ 195 (358)
.+|+ .+.-+.|+||....... .+.|- ...=..+.|++-|..+|+.++.| .++++.++
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 3433 24456799998762221 11221 12223578988875566555432 35777787
Q ss_pred ccCCCccceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
. +..........++|.++.|+|++..+.++ |-.--.+.+||++. .+++.+. .++=+++-|+|.| +
T Consensus 259 ~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------~~v~df~--egpRN~~~fnp~g-~ 324 (566)
T KOG2315|consen 259 Q-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------KPVFDFP--EGPRNTAFFNPHG-N 324 (566)
T ss_pred c-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------CEeEeCC--CCCccceEECCCC-C
Confidence 7 33333344567899999999976544333 66778899999985 4555543 5667899999998 7
Q ss_pred EEEEEeC---CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc-----CCeEEEEEccCCC
Q 018293 275 LLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----KGKLEIWDTLSDA 339 (358)
Q Consensus 275 ~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~ 339 (358)
+++.++. -|.+.|||+.+.+ ++..+... .-+-+.|+|||+|++.+.+. |+.++||+.....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K--~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRK--LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEEeecCCCCCceEEEeccchh--hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 7776655 4789999999866 44444433 24457999999985544443 7889999985433
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=5.8e-12 Score=99.00 Aligned_cols=237 Identities=15% Similarity=0.224 Sum_probs=174.8
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
|...-+++.+.|.+++||--....+..+. .......+++++++.++ ...|+.|-
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wps-------------------------I~~~mP~~~~~~~y~~e-~~~L~vg~ 87 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPS-------------------------IYHYMPSPCSAMEYVSE-SRRLYVGQ 87 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCch-------------------------hhhhCCCCceEeeeecc-ceEEEEEE
Confidence 44556899999999999965432222211 11124578999999998 66899999
Q ss_pred cCCeEEEEECC----CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293 143 ADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 218 (358)
Q Consensus 143 ~dg~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 218 (358)
.+|++.-+.+. ....++....|...+..+-|+-.. ..+++.+.|..+.-.-.+.+.... ........+++.+.-
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFDA 165 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCceee
Confidence 99999988764 345566677899999999998776 788899988877655555544433 122223333333332
Q ss_pred CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293 219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298 (358)
Q Consensus 219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 298 (358)
. +...|...|.|.+-.+..... .++..+.+|..++.+++|.|.. .+|.+|..|..+.+||+...+. ..
T Consensus 166 --~-~~fvGd~~gqvt~lr~~~~~~-------~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~~ 233 (404)
T KOG1409|consen 166 --L-YAFVGDHSGQITMLKLEQNGC-------QLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-TA 233 (404)
T ss_pred --E-EEEecccccceEEEEEeecCC-------ceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-ee
Confidence 1 566777778877776655432 7788899999999999999976 8999999999999999977654 45
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
.+..+|...|..+...+--+ .+.+++.||.|.+|+++....
T Consensus 234 ~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence 66778888899888888777 588899999999999976543
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=4.9e-10 Score=92.56 Aligned_cols=251 Identities=11% Similarity=0.081 Sum_probs=146.1
Q ss_pred ccCCCceEEecCC----------CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293 61 DREKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW 130 (358)
Q Consensus 61 ~s~~~~~l~~g~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 130 (358)
+||||+.|+++.. +..|.+||..+.+......+...+. . ........+++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~-------------------~-~~~~~~~~~~l 112 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR-------------------F-LVGTYPWMTSL 112 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch-------------------h-hccCccceEEE
Confidence 3899998877665 7899999999877665443321000 0 01223457789
Q ss_pred CCCCCcEEEEEE-c-CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eeee
Q 018293 131 NKEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV 207 (358)
Q Consensus 131 ~~~~~~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~ 207 (358)
+|+| ++|+... . +..|.+.|+.+++.+.++.-. +...-...++.. +.+-+.||......+........ ....
T Consensus 113 s~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~v 187 (352)
T TIGR02658 113 TPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEV 187 (352)
T ss_pred CCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeee
Confidence 9995 4555443 4 789999999999998888642 222222222222 12223445444433322211110 0000
Q ss_pred --c--CCe-eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------ecCCceeEEEecCCCCcE
Q 018293 208 --A--ADV-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNL 275 (358)
Q Consensus 208 --~--~~i-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~ 275 (358)
. .++ ..-.|.+.++..+++..+ |.|.+.|+....... ......+. -..+.+.-++++|+++++
T Consensus 188 f~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 188 FHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred ecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----cceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 0 000 000345534556666666 999999975543211 01111111 123344559999998444
Q ss_pred EEEEe---------CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC-eEEEEEccCCeEEEEEccCCCccccc
Q 018293 276 LATGS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 276 l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
++... ..+.|.++|..+.+. +..+.. ...+..++++||++ .++++...++.|.++|..+++.+.+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 44231 124799999999884 333322 34788999999999 65666667899999999999888764
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2.6e-09 Score=85.17 Aligned_cols=289 Identities=10% Similarity=0.157 Sum_probs=173.4
Q ss_pred EEEEEec-CCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC---CeEEEEEcccc
Q 018293 10 IVCARNE-DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVI 85 (358)
Q Consensus 10 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~vw~~~~~ 85 (358)
+.+|... ++...+.+|.++...+ .+...........|.-++| +|++++|.++..+ |.|.-|.++..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g---~l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~ 74 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTG---ELSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPD 74 (346)
T ss_pred EEEeeecccCCCceEEEEEeCccc---ccchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCC
Confidence 3444333 2234556666665554 2222222222333444444 8999999887654 78888888742
Q ss_pred cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCC-Cceee--ee
Q 018293 86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-GKCNL--TL 161 (358)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~--~~ 161 (358)
..... .......-..+-+.++++++ +++++++. ..|.|.++-++. |.+.. ..
T Consensus 75 ~G~Lt-----------------------~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~ 130 (346)
T COG2706 75 DGRLT-----------------------FLNRQTLPGSPPCYVSVDED-GRFVFVANYHSGSVSVYPLQADGSLQPVVQV 130 (346)
T ss_pred CCeEE-----------------------EeeccccCCCCCeEEEECCC-CCEEEEEEccCceEEEEEcccCCccccceee
Confidence 11100 00011111223388999999 45666664 468899999865 43221 11
Q ss_pred cccccc----------eeeEEEcCCCCcEEEEEeC-CCcEEEEEcccCCCccc---eeeecCCeeeEEEcCCCCCeEEEE
Q 018293 162 EHHTDK----------VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVS 227 (358)
Q Consensus 162 ~~~~~~----------v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~ 227 (358)
..|.+. +....+.|++ +++++... --.|.+|++..+..... ..........+.|+|++....++.
T Consensus 131 ~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~ 209 (346)
T COG2706 131 VKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN 209 (346)
T ss_pred eecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe
Confidence 224443 7889999999 67766653 34799999986654321 224456789999999766444555
Q ss_pred ecCCeEEEEEcccCCCCCCCCCCCccEEE---e---ecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCC--CCceee
Q 018293 228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---H---AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCI 298 (358)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~---~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~ 298 (358)
--+++|.+|......... ..++.+ . ........|.++|+| ++|+++.. ...|.+|.+.. ++...+
T Consensus 210 EL~stV~v~~y~~~~g~~-----~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~ 283 (346)
T COG2706 210 ELNSTVDVLEYNPAVGKF-----EELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELV 283 (346)
T ss_pred ccCCEEEEEEEcCCCceE-----EEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence 568999999998741100 111111 1 123456789999999 77777644 34688887754 333333
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.....+...-....|++.|++++|+.-.+..|.+|......
T Consensus 284 ~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 284 GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 33444445578899999999766665556689999886543
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=1.1e-10 Score=111.13 Aligned_cols=265 Identities=13% Similarity=0.144 Sum_probs=159.6
Q ss_pred ccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 59 LKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 59 ~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
+++++ +++++++-..++.|++||.... ... ..++... ....... .-.++-.....+++.++++.+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~---~ig~~g~--------~G~~dG~--~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGN-FIV---QIGSTGE--------EGLRDGS--FEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCC-EEE---EEccCCC--------cCCCCCc--hhccccCCCcEEEEeCCCCEE
Confidence 34465 4667777778889999997532 111 0110000 0000000 001123346788999884434
Q ss_pred EEEEEcCCeEEEEECCCCceeeeeccc-----------------ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
+++-..++.|+++|..++. +.++.+. -.....++++|++..++++...++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 4444556789999987764 3333110 123467999996547778888889999999876532
Q ss_pred ccce--------------eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC----CCCCccEEEee----
Q 018293 201 SGFK--------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS----TSQQSSFTLHA---- 258 (358)
Q Consensus 201 ~~~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~---- 258 (358)
.... ...-.....++++|++..++++-..++.|++||+.++...... ........+..
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 1100 0011345679999977667777778899999999865210000 00000001100
Q ss_pred ----cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec-----------CCCCceeEEEEEcCCCCeEEEE
Q 018293 259 ----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------NPKAGAVFSVAFSEDSPFVLAI 323 (358)
Q Consensus 259 ----~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~ 323 (358)
.-....+++++++| .++++-+.++.|++||..++....+... ...-.....++++++|+ ++++
T Consensus 798 g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa 875 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA 875 (1057)
T ss_pred hhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE
Confidence 01123688999988 7888888899999999987753222111 01112467899999998 7888
Q ss_pred EccCCeEEEEEccCCCc
Q 018293 324 GGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 324 ~~~dg~i~vw~~~~~~~ 340 (358)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999988765
No 262
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=4.9e-12 Score=98.20 Aligned_cols=250 Identities=18% Similarity=0.260 Sum_probs=161.9
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc------------ccE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT------------DSV 125 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v 125 (358)
++.|...|.||++|...|.|.+|.-.... ....+....+++|. ..|
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~ceykf~teFQshe~EFDYLkSleieEKi 88 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCEYKFFTEFQSHELEFDYLKSLEIEEKI 88 (460)
T ss_pred EEEeccccceEeecCCCceEEEeeccccc----------------------ccchhhhhhhcccccchhhhhhccHHHHh
Confidence 34457889999999999999999865321 11222233344443 468
Q ss_pred EEEecCCC-CCcEEEEEEcCCeEEEEECCCCc-------------------eee-----------------------ee-
Q 018293 126 LGLAWNKE-FRNILASASADKQVKIWDVAAGK-------------------CNL-----------------------TL- 161 (358)
Q Consensus 126 ~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------------------~~~-----------------------~~- 161 (358)
..|.|..+ +...++..+.|.+|++|.+.... ++. ..
T Consensus 89 n~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvya 168 (460)
T COG5170 89 NAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYA 168 (460)
T ss_pred hheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecc
Confidence 88888654 45567778899999999875320 000 01
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--------eecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPHAEHSFVVSLEDGTI 233 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i 233 (358)
..|...+.++.|+.+. ..+++ ..|-.|.+|++.......... ....-|++..|+|...+.+..++..|.|
T Consensus 169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 2467778899999887 55554 458889999987554322111 1234588999999888888889999999
Q ss_pred EEEEcccCCCCCCCCC-------CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc
Q 018293 234 KGFDIRTAKSDPDSTS-------QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 306 (358)
Q Consensus 234 ~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 306 (358)
++-|+|.......... .....-+..-.+.|..+.|+++| +++++-.. -++++||++..+. ++.+...|..
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~ 323 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCD 323 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHH
Confidence 9999995422110000 00011112234678899999998 88887554 5799999987653 4555444421
Q ss_pred ------------e---eEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 307 ------------A---VFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 307 ------------~---v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
. -..+.|+.|... +.+|+..+..-+|-.
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~ 366 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCccc-ccccccccceeeecc
Confidence 2 235788888775 667877777666653
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=9.1e-10 Score=87.74 Aligned_cols=259 Identities=12% Similarity=0.210 Sum_probs=159.3
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC-CCeEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEI 79 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~v 79 (358)
|.++|+++.|.++..+++.+.+..|-++...+ .+-.......+..+.| .++.+++|++|+++.. .|.|.+
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~------yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPC------YVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCe------EEEECCCCCEEEEEEccCceEEE
Confidence 57899999999998887777888887877654 4433333344444433 3455899999999875 489999
Q ss_pred EEcccccCcCce-eecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc-CCeEEEEECCCCce
Q 018293 80 WDLDVIDEVQPH-VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAAGKC 157 (358)
Q Consensus 80 w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~ 157 (358)
+-++....+.+. ....... .. .+. ..-..-+....+.|+ +++|++.+. --.|.+|++..|++
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g-------------~~-p~~-rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L 179 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTG-------------SG-PHE-RQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKL 179 (346)
T ss_pred EEcccCCccccceeeeecCC-------------CC-CCc-cccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCcc
Confidence 999764333322 1110000 00 000 001112778889999 556666643 34699999998765
Q ss_pred eeeec---ccccceeeEEEcCCCCcEEE-EEeCCCcEEEEEcccCC-Cccc---------eeeecCCeeeEEEcCCCCCe
Q 018293 158 NLTLE---HHTDKVQAVAWNHHSPQILL-SGSFDRSVVMKDARIST-HSGF---------KWAVAADVESLAWDPHAEHS 223 (358)
Q Consensus 158 ~~~~~---~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~---------~~~~~~~i~~~~~~~~~~~~ 223 (358)
...-. ......+.|.|+|++ ++.. ..--+++|.+|...... .... .+........+..++++. +
T Consensus 180 ~~~~~~~v~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr-F 257 (346)
T COG2706 180 TPADPAEVKPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR-F 257 (346)
T ss_pred ccccccccCCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC-E
Confidence 32211 234567899999999 5544 45569999999987741 1111 112234577888999655 5
Q ss_pred EEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCC
Q 018293 224 FVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN 292 (358)
Q Consensus 224 ~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~ 292 (358)
|.++. ....|.+|.+...... ...+.....+....+...++|.+ ++|+++.. +..|.+|.+..
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 55543 3447888888765210 01222223334446889999988 66666655 45688887654
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.44 E-value=4.3e-10 Score=92.53 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=138.9
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEee----ceeecCCcccceeeecCCcccc-CCCceEEecCCCCeE
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH----HHIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPAI 77 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i 77 (358)
.+.+|..++.. ..+ .+|+|+..++....+-.. .+...+.+..-.+++. .|+ .+|++++..+ -|..
T Consensus 274 ~nsDGkrIvFq-~~G-----dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VS-RGka 343 (668)
T COG4946 274 ANSDGKRIVFQ-NAG-----DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVS-RGKA 343 (668)
T ss_pred cCCCCcEEEEe-cCC-----cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEe-cCcE
Confidence 35678888777 334 899999888755444333 1222222222233322 122 2688888887 4667
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC-eEEEEECCCCc
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAGK 156 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~ 156 (358)
.|.+...+-.+ ..+|.+.|.-..+..+ ++-++.|..|| .+-|+|..+++
T Consensus 344 Fi~~~~~~~~i-----------------------------qv~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e 393 (668)
T COG4946 344 FIMRPWDGYSI-----------------------------QVGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE 393 (668)
T ss_pred EEECCCCCeeE-----------------------------EcCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce
Confidence 67665432221 1257778888888877 45788999999 89999988876
Q ss_pred eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC----e
Q 018293 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG----T 232 (358)
Q Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg----~ 232 (358)
. ..+...-+.|.++..+++| ..++.+.....+.+.|+.++..........+-|+.+.|+|+ ...++-+--+| .
T Consensus 394 ~-kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~ 470 (668)
T COG4946 394 V-KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQS 470 (668)
T ss_pred E-EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-ceeEEEecCcceeeee
Confidence 4 4455566789999999999 88999999999999999999877666667788999999995 55787776655 5
Q ss_pred EEEEEcccCC
Q 018293 233 IKGFDIRTAK 242 (358)
Q Consensus 233 i~i~d~~~~~ 242 (358)
|++||+..++
T Consensus 471 Iklydm~~~K 480 (668)
T COG4946 471 IKLYDMDGGK 480 (668)
T ss_pred EEEEecCCCe
Confidence 8899988754
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.1e-10 Score=100.61 Aligned_cols=249 Identities=12% Similarity=0.247 Sum_probs=152.8
Q ss_pred ceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293 51 CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW 130 (358)
Q Consensus 51 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 130 (358)
|++| +....++|+|+.||.++|..+.+........-+. .......-..+.||+..|.-+.|
T Consensus 19 c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------------a~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 19 CAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------------AASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred EEEE-------cccCCeEEeccccceeEEEEccccCCcccccccc------------cccccchhhhhccCcceEEEEEe
Confidence 7778 7788999999999999999987643322111111 11223445678899999999999
Q ss_pred CCCCCcEEEEEEcCCeEEEEECCCCceeeee--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee---
Q 018293 131 NKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--- 205 (358)
Q Consensus 131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--- 205 (358)
+.+ .+.|-+...+|.|.+|-+-.+.-...+ ....+-|.+++|+.+| ..++....||.|.+=.+...+.-....
T Consensus 80 Ne~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~ 157 (1189)
T KOG2041|consen 80 NEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQ 157 (1189)
T ss_pred ccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchh
Confidence 988 678999999999999999887654443 2345778999999999 778888888887664443221100000
Q ss_pred -------------------------------------------------eecCCeeeEEEcC-------CCCCeEEEEec
Q 018293 206 -------------------------------------------------AVAADVESLAWDP-------HAEHSFVVSLE 229 (358)
Q Consensus 206 -------------------------------------------------~~~~~i~~~~~~~-------~~~~~~~~~~~ 229 (358)
.....+..+.|.. -+...++++..
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~ 237 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA 237 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence 0001122333321 12335666666
Q ss_pred CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---------cEEEEecCCCCceeeEe
Q 018293 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---------MVKLWDLSNNQPSCIAS 300 (358)
Q Consensus 230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~ 300 (358)
+|.+++..-.+.. .++.. ...-.+....|+++| ..|+.++.+. .|.+|..-. + .+..
T Consensus 238 nGr~QiMR~eND~--------~Pvv~--dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~--i~gt 303 (1189)
T KOG2041|consen 238 NGRMQIMRSENDP--------EPVVV--DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H--IVGT 303 (1189)
T ss_pred CceehhhhhcCCC--------CCeEE--ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h--heEE
Confidence 6666664443331 12111 112457889999998 8888877653 345554322 2 2344
Q ss_pred cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
+......|++++|-..|-. +|. ..|+.|++=+++
T Consensus 304 lkvpg~~It~lsWEg~gLr-iA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 304 LKVPGSCITGLSWEGTGLR-IAI-AVDSFIYFANIR 337 (1189)
T ss_pred EecCCceeeeeEEcCCceE-EEE-EecceEEEEeec
Confidence 4445567888888776642 322 234555444443
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=3.2e-12 Score=119.91 Aligned_cols=200 Identities=15% Similarity=0.186 Sum_probs=151.9
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
+-..|.++.-+|. ..+.++|+.||.|++|....++.+..++ .....|+.+.|+.+| +.+..+..||.+.+|... .+
T Consensus 2207 ~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-Cc
Confidence 4567888888888 5588899999999999998887776664 234789999999999 778889999999999987 33
Q ss_pred CccceeeecCCeeeEEEcCCCCCeEEEE---ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293 200 HSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 276 (358)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 276 (358)
.......|......+.|-. ..+++. +.++.+.+||..... .....-..|.+.++++++.|.. .+|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-qll 2351 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QLL 2351 (2439)
T ss_pred ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eEE
Confidence 3333445666777777764 245553 457899999987652 2222338899999999999987 899
Q ss_pred EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293 277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
++|+.+|.|++||++..+. ...++. +. ... .+++|+..|.|+||++..-..++.....+
T Consensus 2352 isggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence 9999999999999988763 222321 44 444 58999999999999998877666544443
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=3.2e-12 Score=119.84 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=140.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+|...+.+||+.||.|++|....++.+..... ..+..|+.+.|+.+ ++.+..+
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--------------------------~g~s~vtr~~f~~q-Gnk~~i~ 2269 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--------------------------AGNSRVTRSRFNHQ-GNKFGIV 2269 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeec--------------------------cCcchhhhhhhccc-CCceeee
Confidence 67888999999999999999876554432221 23378999999999 5678888
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe---CCCcEEEEEcccCCCc-cceeeecCCeeeEEEc
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS-GFKWAVAADVESLAWD 217 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~ 217 (358)
..||.+.+|.+. .++....+.|........|-.. .+++++ .++.+.+||....... .....|.+.++++++.
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred ccCCceeecccC-CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEc
Confidence 999999999976 5667777889988888888763 456654 5788999997654332 2236788999999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
| ...++++|+.+|.|++||++.. +..+.++. +. . +.++++|+..|.++||++....
T Consensus 2346 P-~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~-~-~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2346 P-KHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD-T-REYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred C-cceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh-h-hheeeccCcccceEEEEccccc
Confidence 9 5669999999999999999976 44433332 33 2 3799999999999999998765
No 268
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.37 E-value=1.2e-11 Score=93.67 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred CcEEEEEEcCCeEEEEECCCCc-eeeeecccccceeeEEEcCCCCcEEEEE-----eCCCcEEEEEcccCCCccceeeec
Q 018293 135 RNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSG-----SFDRSVVMKDARISTHSGFKWAVA 208 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~ 208 (358)
.+-++++..||.+.+++.+.-. ....+..-...-.+.+....+ +.+.++ ..-+..+.|+++..+.........
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeeccccccccccccccc
Confidence 3469999999999999976521 111111111111122233333 333322 123455667766554443333334
Q ss_pred CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 288 (358)
Q Consensus 209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 288 (358)
..+.+++-+|...+++++|+.||.+.+||.++. ..+...+..|..+|..+-|+|..+..|+++++||.+..|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 459999999988889999999999999999987 256667789999999999999888999999999999999
Q ss_pred ecCC
Q 018293 289 DLSN 292 (358)
Q Consensus 289 d~~~ 292 (358)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9874
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=2.6e-09 Score=100.13 Aligned_cols=305 Identities=16% Similarity=0.223 Sum_probs=179.4
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEE--eccCC-CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYIL--EESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 78 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 78 (358)
++-++...++++...+ .+..+ +...+ ...... ..++.-+.|++| |||+..|+..+.+|++.
T Consensus 82 ~yl~d~~~l~~~~~~G-----di~~~~~~~~~~~~~~E~V----G~vd~GI~a~~W-------SPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 82 QYLADSESLCIALASG-----DIILVREDPDPDEDEIEIV----GSVDSGILAASW-------SPDEELLALVTGEGNLL 145 (928)
T ss_pred EeccCCCcEEEEECCc-----eEEEEEccCCCCCceeEEE----EEEcCcEEEEEE-------CCCcCEEEEEeCCCEEE
Confidence 4556666777776666 45554 21111 111111 234455567777 99999999999999998
Q ss_pred EEEcccccCcCceeecCCccccccc----c-------cccCCce-----------eccccccCCCcccEEEEecCCCCCc
Q 018293 79 IWDLDVIDEVQPHVILGGIDEEKKK----K-------KSKKGKK-----------SSIKYKKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 79 vw~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~ 136 (358)
+.+- +.+.+....+........+. | ....++. ......+. +...-..|+|-.| +.
T Consensus 146 ~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD-G~ 222 (928)
T PF04762_consen 146 LMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD-GE 222 (928)
T ss_pred EEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC-Cc
Confidence 8753 22222222221111111000 0 0000000 00112233 5556778999999 66
Q ss_pred EEEEEEc---C---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---CCcEEEEEcccCCCcccee--
Q 018293 137 ILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTHSGFKW-- 205 (358)
Q Consensus 137 ~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-- 205 (358)
++|+.+. . ..++||+-+ |....+-..-.+--.+++|.|.| +++++... ...|.+|.-+..+......
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~ 300 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence 8888775 3 479999944 66544444333444578999999 77777654 3557777755443332222
Q ss_pred -eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCC
Q 018293 206 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDK 283 (358)
Q Consensus 206 -~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg 283 (358)
.....+..+.|++++ .+|++-..|. |++|-..+..- -..+.+... ...+..+.|+|..+..|...+.+|
T Consensus 301 ~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW-------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW-------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE-------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence 345678999999965 4777766555 99999987632 222222211 233455999998777788887777
Q ss_pred cEEEEecC----CC----------------C--------------ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293 284 MVKLWDLS----NN----------------Q--------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 329 (358)
Q Consensus 284 ~i~i~d~~----~~----------------~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 329 (358)
.+..+++. .+ . |.+...+. ...+|.+++|++++.. +++-..||.
T Consensus 372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~-~avl~~d~~ 449 (928)
T PF04762_consen 372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR-FAVLTSDGS 449 (928)
T ss_pred cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe-EEEEECCCC
Confidence 77665431 11 0 00111111 2467999999999884 788889999
Q ss_pred EEEEEccCC
Q 018293 330 LEIWDTLSD 338 (358)
Q Consensus 330 i~vw~~~~~ 338 (358)
|.+|.....
T Consensus 450 l~~~~~~~~ 458 (928)
T PF04762_consen 450 LSIYEWDLK 458 (928)
T ss_pred EEEEEecCC
Confidence 999986554
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.1e-09 Score=91.89 Aligned_cols=288 Identities=14% Similarity=0.171 Sum_probs=177.1
Q ss_pred CcccCCCcEEEEEEecCCC------ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC
Q 018293 1 MTINPNDAVIVCARNEDDV------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 74 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 74 (358)
++|||..+.|++=+..-+. ..-++.+|+...+....-+..-+......| -+ +||.|++|+|.-..
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP-~f-------rWS~DdKy~Arm~~- 325 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWP-IF-------RWSHDDKYFARMTG- 325 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccc-eE-------EeccCCceeEEecc-
Confidence 4799999999987554322 335788888877633322221111111111 23 45999999998775
Q ss_pred CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC-----CeEEE
Q 018293 75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-----KQVKI 149 (358)
Q Consensus 75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~i 149 (358)
..|.||+..+...+.... -.-..|...+|+|. +++||--... ..+.+
T Consensus 326 ~sisIyEtpsf~lld~Ks---------------------------lki~gIr~FswsP~-~~llAYwtpe~~~~parvtL 377 (698)
T KOG2314|consen 326 NSISIYETPSFMLLDKKS---------------------------LKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTL 377 (698)
T ss_pred ceEEEEecCceeeecccc---------------------------cCCccccCcccCCC-cceEEEEcccccCCcceEEE
Confidence 578899986533332111 13356888899998 6666543221 24566
Q ss_pred EECCCCceeeeecccccceeeEEEcCCCCcEEEEE----------eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
-.+-+++.+++-.-+.-.=..|.|..+| .+|+.- +.-..+.|+.++..............+...+|.|.
T Consensus 378 ~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~ 456 (698)
T KOG2314|consen 378 MEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPH 456 (698)
T ss_pred EecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccC
Confidence 6666666665555444333456777777 555442 11124566777766666656677889999999997
Q ss_pred CCCeEEEEec--CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE---eCCCcEEEEecCCCC
Q 018293 220 AEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG---STDKMVKLWDLSNNQ 294 (358)
Q Consensus 220 ~~~~~~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~---~~dg~i~i~d~~~~~ 294 (358)
|+.+.+..+. ..++.+|.+.+.... ...+..+.. ...+.+.|+|.| ++++.+ +..|.+.++|+....
T Consensus 457 gdkF~vi~g~~~k~tvsfY~~e~~~~~-----~~lVk~~dk--~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 457 GDKFAVISGNTVKNTVSFYAVETNIKK-----PSLVKELDK--KFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred CCeEEEEEccccccceeEEEeecCCCc-----hhhhhhhcc--cccceEEEcCCC-cEEEEEEecccccceEEEecchhh
Confidence 7655444443 357899998853211 133444433 557889999999 666654 447889999988533
Q ss_pred ceeeEecCCCCceeEEEEEcCCCCeEEEEEcc------CCeEEEEEccC
Q 018293 295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLS 337 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vw~~~~ 337 (358)
.. ......| -..+.+.|.|.|+| +++++. |..-++|++..
T Consensus 529 ~k-~~~~~eh-~~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 529 LK-DTASPEH-FAATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hh-hccCccc-cccccceECCCCCE-EEEeeehhhhccccceEEEEeec
Confidence 21 1122223 34667899999998 555554 44567888764
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=6.9e-10 Score=84.70 Aligned_cols=240 Identities=14% Similarity=0.072 Sum_probs=152.1
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
.-.+||.|+..|...+|...+.+..... -..|...|+-+.=.-+....+..++.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~--------------------------cd~snn~v~~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQ--------------------------CDVSNNDVTLVKRYCDLKFPLNIASN 136 (344)
T ss_pred cccEEEeccccceeeeecccCcccceee--------------------------ecccccchhhhhhhcccccceeeccC
Confidence 4458999999999999999865443221 11233333222211121234666788
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce---eeecCCeeeEEEcCCC
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDPHA 220 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~ 220 (358)
|.++++.+++-+..........-.+.++.+++++ .++++.+....|..|.+......... ......-.+..|+..
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~- 214 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN- 214 (344)
T ss_pred CcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-
Confidence 9999999887654332222111237889999999 89999999999999998765443211 223445667888884
Q ss_pred CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc-EEEEEeCCCcEEEEecCCCCceeeE
Q 018293 221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 299 (358)
...+|++..||++.|||+|...... .........|.+.+..+.|++.|.- +|+..-.-+.+.+.|+++.....+.
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cceEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 4589999999999999999874321 0112223458899999999985532 3333333567999999997643333
Q ss_pred ecC------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 300 SRN------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 300 ~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
... .....|....|+.++....+ .+++ .+.=|++.+
T Consensus 291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v-~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 291 VIPDDVERKHNTQHIFGTNFNNENESNDV-KNEL-QGAEYNILS 332 (344)
T ss_pred ecCccccccccccccccccccCCCccccc-ccch-hhheeeccc
Confidence 222 12344778888888775333 3333 344455544
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.1e-09 Score=88.52 Aligned_cols=279 Identities=14% Similarity=0.173 Sum_probs=171.3
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-----C---
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-----M--- 73 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----~--- 73 (358)
.++++|++++.+..+ .+++++..... ...-. .. .... .+.|||-|.+|.|=- .
T Consensus 41 ~~S~~G~lfA~~~~~------~v~i~~~~~~~---~~lt~--~~-~~~~-------~L~fSP~g~yL~T~e~~~i~~~~~ 101 (566)
T KOG2315|consen 41 AYSNNGRLFAYSDNQ------VVKVFEIATLK---VVLCV--EL-KKTY-------DLLFSPKGNYLLTWEPWAIYGPKN 101 (566)
T ss_pred EEcCCCcEEEEEcCC------eEEEEEccCCc---EEEEe--cc-ceee-------eeeecccccccccccccccccCCC
Confidence 478899999988444 88888887752 11111 11 1222 334588888887621 1
Q ss_pred --CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293 74 --EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 151 (358)
Q Consensus 74 --dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 151 (358)
.-.+.+|++.++.....+. ...+.. ++..|++| . .+++--..+.+.+|+
T Consensus 102 ~~~pn~~v~~vet~~~~s~~q--------------------------~k~Q~~-W~~qfs~d-E-sl~arlv~nev~f~~ 152 (566)
T KOG2315|consen 102 ASNPNVLVYNVETGVQRSQIQ--------------------------KKMQNG-WVPQFSID-E-SLAARLVSNEVQFYD 152 (566)
T ss_pred CCCCceeeeeeccceehhhee--------------------------hhhhcC-cccccccc-h-hhhhhhhcceEEEEe
Confidence 2357799988732221110 012222 68899988 4 344444567899999
Q ss_pred CCCCceeeeecccccceeeEEEcCCCCc-EEEE-----EeCCCcEEEEEcccCCCc---cceeeecCCeeeEEEcCCCCC
Q 018293 152 VAAGKCNLTLEHHTDKVQAVAWNHHSPQ-ILLS-----GSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPHAEH 222 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~ 222 (358)
+...+.+. -.-|...|+.+.++|.... .+++ .+.-+.+++|.......- ....-....-..+.|++-+..
T Consensus 153 ~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 153 LGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred cCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 87743322 2235778999999998433 3333 244567999987632211 111112233455778876555
Q ss_pred eEEEEec--C---------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE-EeCCCcEEEEec
Q 018293 223 SFVVSLE--D---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDL 290 (358)
Q Consensus 223 ~~~~~~~--d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~d~ 290 (358)
+|+..+. | .+++++++... .....+ ...++|.++.|+|++..+.++ |-.=-.+.|||+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGE---------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCc---------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 5555432 2 35777777622 233333 247899999999998544444 445667999999
Q ss_pred CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc--CCeEEEEEccCCCccccc
Q 018293 291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~ 344 (358)
+.. .+..+. .++-+++-|+|.|++++++|-. -|.|.|||+.+.+++.+.
T Consensus 302 r~~---~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 302 RGK---PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred CCC---EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 765 355544 5778889999999976665543 389999999997776543
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=2.1e-09 Score=82.13 Aligned_cols=204 Identities=13% Similarity=-0.004 Sum_probs=136.1
Q ss_pred cEEEEEEcCCeEEEEECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 136 NILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
-+||.|+..|...+|...+.+. .+....|...|+-+.=.-+....+..++.|.++++.++..+..........-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 3899999999999999986643 333333444333222222222446778888888888887654433222222337889
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE-EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
+++++ +.++++.+....|..|.+..... ..+. ........-.+..|+... ..+|++..||++.|||++..
T Consensus 165 ~~snd-~~~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 165 HYSND-PSWGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred EEcCC-CceEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence 99995 55888888889999999987532 1222 222233444678899877 79999999999999999875
Q ss_pred Cce---eeEecCCCCceeEEEEEcCCCCe-EEEEEccCCeEEEEEccCCCccccccccC
Q 018293 294 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 294 ~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
... .......|.+.+..+.|++.|.. +|...-.-+.+.+-|++++..........
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 421 12234568999999999986632 34444556789999999988766544443
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1e-08 Score=88.47 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=118.9
Q ss_pred cEEEEecCCCCCcEEEEEEc---CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccC
Q 018293 124 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARIS 198 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~ 198 (358)
.+..-.|+|++...++..+. +..|.++|+.+++...... ..+......|+|||..++++.+.++ .|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 67788999996544554333 3569999998886544433 4455667889999966666665554 5777787666
Q ss_pred CCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293 199 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 276 (358)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 276 (358)
+... ............|+|++..++++....+ .|.++|+..+.. ..+...... ...|+|+|..++
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----------~rlt~~g~~--~~~~SPDG~~Ia 334 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----------EQVVFHGKN--NSSVSTYKNYIV 334 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----------EeCccCCCc--CceECCCCCEEE
Confidence 5333 2223333445689998877777765555 566777765521 111111111 248999994444
Q ss_pred EEEeCC--------CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEccC
Q 018293 277 ATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS 337 (358)
Q Consensus 277 ~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~~~ 337 (358)
++.... ..|.+.|+.++....+ ... .......|+|||+.++.+....+. +.+.++..
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L---T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRL---TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEEC---CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 444333 3688889888864322 222 223357899999976665544443 55666644
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=6.1e-09 Score=86.55 Aligned_cols=299 Identities=14% Similarity=0.156 Sum_probs=174.5
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe-----
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA----- 76 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~----- 76 (358)
.+||.|..|+..... .|.+|...... .-....|. .+.. +.|||.++||.+=+..+.
T Consensus 39 ~~SP~G~~l~~~~~~------~V~~~~g~~~~-~l~~~~~~--------~V~~----~~fSP~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 39 SESPLGTYLFSEHAA------GVECWGGPSKA-KLVRFRHP--------DVKY----LDFSPNEKYLVTWSREPIIEPEI 99 (561)
T ss_pred eecCcchheehhhcc------ceEEccccchh-heeeeecC--------Ccee----cccCcccceeeeeccCCccChhh
Confidence 578899998888554 33333333211 11111111 2222 245999999998765444
Q ss_pred ----------EEEEEcccccCcCceeecCCc----cccc-----c---ccc------cc--CCceeccccccCCCcccEE
Q 018293 77 ----------IEIWDLDVIDEVQPHVILGGI----DEEK-----K---KKK------SK--KGKKSSIKYKKGSHTDSVL 126 (358)
Q Consensus 77 ----------i~vw~~~~~~~~~~~~~~~~~----~~~~-----~---~~~------~~--~~~~~~~~~~~~~h~~~v~ 126 (358)
+.+||+.++..+......... +..+ + ... .. ......+...+ ....|.
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l--r~~gi~ 177 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL--RPVGIL 177 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc--ccccee
Confidence 999999988766544333222 0000 0 000 00 00000000111 125677
Q ss_pred EEecCCCCC-cEEEE-----EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEE-Ee----------CCCc
Q 018293 127 GLAWNKEFR-NILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLS-GS----------FDRS 189 (358)
Q Consensus 127 ~~~~~~~~~-~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~----------~dg~ 189 (358)
..+|+|.+. ..||. ....+.+++|.+..++.+.+-.-....-..+.|++.| .+++. .- ....
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeeecccceeccce
Confidence 888888732 23333 3567789999988666554433223333468899888 44433 21 1246
Q ss_pred EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268 (358)
Q Consensus 190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 268 (358)
+.+++++...... .....++|...+|.|.+..+.++ |..+-.+.++|++.. ..+. .....=+.+.|
T Consensus 257 Lyl~~~~e~~i~V-~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l~~~--~Pe~~rNT~~f 323 (561)
T COG5354 257 LYLLRITERSIPV-EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------LRFY--FPEQKRNTIFF 323 (561)
T ss_pred EEEEeecccccce-eccccccceeeeecccCCceeEEecccccceeecccccc----------eEEe--cCCcccccccc
Confidence 7888887444433 33668899999999976655444 367888999999853 2222 23344567889
Q ss_pred cCCCCcEEEEEeCC---CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE-----ccCCeEEEEEccCCC
Q 018293 269 NPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG-----GSKGKLEIWDTLSDA 339 (358)
Q Consensus 269 ~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~ 339 (358)
+|.+ ++++.++-| |.+-+||....- .++..+.+. ...-+.|+|+++++...- -.|..|.|||+....
T Consensus 324 sp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 324 SPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred cCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 9988 777776654 669999987654 233344432 244578999999744332 236789999996543
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.27 E-value=3.8e-08 Score=76.40 Aligned_cols=234 Identities=14% Similarity=0.167 Sum_probs=131.3
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+.+|++||+-- |..|.|-.....= . .-.......+.-.-.=.-++|||| ..+||.+
T Consensus 6 ~~~Gk~lAi~q-d~~iEiRsa~Ddf--~--------------------si~~kcqVpkD~~PQWRkl~WSpD-~tlLa~a 61 (282)
T PF15492_consen 6 SSDGKLLAILQ-DQCIEIRSAKDDF--S--------------------SIIGKCQVPKDPNPQWRKLAWSPD-CTLLAYA 61 (282)
T ss_pred cCCCcEEEEEe-ccEEEEEeccCCc--h--------------------heeEEEecCCCCCchheEEEECCC-CcEEEEE
Confidence 67898888774 6677776543210 0 000011112223334568899999 7799999
Q ss_pred EcCCeEEEEECCCCceeeeecc-------cccceeeEEEcCCC-----CcEEEEEeCCCcEEEEEcccCCCc--ccee--
Q 018293 142 SADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSVVMKDARISTHS--GFKW-- 205 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-- 205 (358)
...|+|+++|+... .+..+.. ....|..|.|.+.. ...|++-..+|.++-|-+..+... ....
T Consensus 62 ~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf 140 (282)
T PF15492_consen 62 ESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF 140 (282)
T ss_pred cCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE
Confidence 99999999998753 3333321 23567777775432 246777888888888876433211 1111
Q ss_pred ----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE-Ee
Q 018293 206 ----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GS 280 (358)
Q Consensus 206 ----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~ 280 (358)
.....|.++.++|. .++|++|+.... ..+. -.+....+++-..-.+.+.+..+ ..
T Consensus 141 sf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPK-HRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred EecccCCCceeEEEEcCC-CCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEcccc
Confidence 13568999999995 456666543221 0000 00111122222222222222211 11
Q ss_pred CCCc------EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 281 TDKM------VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 281 ~dg~------i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
.|+. ..+|.+-+.+. ..........|..|..||||. +||+...+|.|.+|++.+-....+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred Cccccccccccceeeccceee--eeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcc
Confidence 1211 22333333221 111123456799999999999 699999999999999988665443
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.3e-11 Score=103.28 Aligned_cols=210 Identities=19% Similarity=0.266 Sum_probs=146.1
Q ss_pred ccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC-------CceeeeecccccceeeEEEcCCCCcEEEEEeCC
Q 018293 115 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187 (358)
Q Consensus 115 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 187 (358)
...+.||+..|..++--.+ .+-+++++.|++|++|.++. ..+..+++.|..+|.++.|..+. +.++ +-|
T Consensus 728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--ecc
Confidence 4467799999999877655 66899999999999999863 24677889999999999999887 5554 458
Q ss_pred CcEEEEEcccCCCcccee--eecCCeeeEEEcCC-CCCeEEEE-ecCCeEEEEEcccCCCCCCCCCCCccEEE---eecC
Q 018293 188 RSVVMKDARISTHSGFKW--AVAADVESLAWDPH-AEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHD 260 (358)
Q Consensus 188 g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~ 260 (358)
|.|.+||.-.++...... ...+.+..+..-++ +..++.+| +...+|+++|.+.... .+.... .+..
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-------~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-------TCELKVCNAPGPN 876 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-------eeeEEeccCCCCc
Confidence 999999987666543221 12233333433343 33355554 7788999999998732 111111 2334
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEE-EEccCCC
Q 018293 261 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDA 339 (358)
Q Consensus 261 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v-w~~~~~~ 339 (358)
..+.+++..+.| +.++++-..|.|.+.|.++++ .+............++- |..+ .++....|.++.+ |...++.
T Consensus 877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~--vINswrpmecdllqlaa-psdq-~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGK--VINSWRPMECDLLQLAA-PSDQ-ALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred hheeEEEeccCc-chhhHHhcCCcEEEEecCCCc--eeccCCcccchhhhhcC-chhH-HHHhhcccceeEeeehhcCCe
Confidence 568899999988 899999999999999999998 34444443334444432 4455 3677777888888 8766654
Q ss_pred c
Q 018293 340 G 340 (358)
Q Consensus 340 ~ 340 (358)
.
T Consensus 952 m 952 (1034)
T KOG4190|consen 952 M 952 (1034)
T ss_pred e
Confidence 3
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=4e-08 Score=76.25 Aligned_cols=240 Identities=15% Similarity=0.195 Sum_probs=127.4
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|..+++|++||+.... .+++. ...++.. .+...-..+.+..| .|- -++||||+.+||.+...|+|++|
T Consensus 3 ~~~~~~Gk~lAi~qd~----~iEiR--sa~Ddf~-si~~kcqVpkD~~P---QWR--kl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ----CIEIR--SAKDDFS-SIIGKCQVPKDPNP---QWR--KLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCCcEEEEEecc----EEEEE--eccCCch-heeEEEecCCCCCc---hhe--EEEECCCCcEEEEEcCCCeEEEE
Confidence 4567899999988542 33333 2222211 22222222222222 221 23459999999999999999999
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-----CcEEEEEEcCCeEEEEECCCC
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVAAG 155 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~~ 155 (358)
|+...+... +... . .....-..+|..+.|.+.. ...|+.-..+|.++=|-+..+
T Consensus 71 dl~g~~lf~---I~p~-------------~-----~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 71 DLMGSELFV---IPPA-------------M-----SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred ecccceeEE---cCcc-------------c-----ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence 987422211 0000 0 0011234567777765431 224666677888887765322
Q ss_pred -----ceeeeec---ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293 156 -----KCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 227 (358)
Q Consensus 156 -----~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 227 (358)
+....+. .+...|.++.++|.. ++|++|+.... +.+. .......+++-..-.+.+.+..+.
T Consensus 130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 130 TNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred cCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEcc
Confidence 2333332 246789999999998 66666653322 0000 011122223222222222222221
Q ss_pred ec-CCe------EEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 228 LE-DGT------IKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 228 ~~-dg~------i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
.. |+. -.+|.+-+. ..+.. ......|..|..+||| .+|++...+|.|.+|++.+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~----------~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSF----------KFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccCccccccccccceeeccce----------eeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 11 111 122222111 11111 2235679999999999 8999999999999999988763
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=6.7e-09 Score=90.69 Aligned_cols=243 Identities=17% Similarity=0.164 Sum_probs=167.1
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-----
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----- 134 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----- 134 (358)
.|+|.| ++|-|+. ..|.|-|..+.+.++ .+.-|...|+.+.|.|..
T Consensus 22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---------------------------sie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---------------------------SIELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred ccCccc-eEEEecC-ceEEEEehhhhhhhh---------------------------ccccCccceeEEEeccCCCchhc
Confidence 346666 7777764 477788876544333 455688999999997641
Q ss_pred ------CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCC---CCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 135 ------RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 135 ------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
.-+||++...|.|.+||...+..+..++.|.+++..++|-+. ...++++-....++.+|+..+++..-...
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 236888888999999999999888899999999999999653 33567777778899999999988765444
Q ss_pred eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC------------------------
Q 018293 206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------------------ 261 (358)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 261 (358)
.......|+.++|.+...+...+..|.+.+-+.-........ .+..+.-..|..
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi 230 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI 230 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence 455667889999988888888888888887766443221110 111111111111
Q ss_pred -ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC--CeEEEEEccCCeEEEEEccC
Q 018293 262 -AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 262 -~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~ 337 (358)
....++|+|.-.+.++.. .-..+.++|++-.....+..++ .+.+.-+.+-|++ . .|.+.-.||.+.+|-.+.
T Consensus 231 ty~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd-~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 231 TYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRD-ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcc-eEEEEecCCeEEEEEeec
Confidence 122356788664555444 4567999999988754444444 3444455666654 4 578899999999998765
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.22 E-value=2.7e-08 Score=82.22 Aligned_cols=227 Identities=13% Similarity=0.109 Sum_probs=150.1
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEe-cCCCCCcEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-WNKEFRNILAS 140 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~l~s 140 (358)
+.||+.++-. ..|.|.+||-.+.....-..-+.. .+.. .....-.+..-+. |++-.+.+++.
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl-------------~rk~---k~~k~~~pskyledfa~~~Gd~ia~ 337 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPL-------------DRKK---KQPKFVNPSKYLEDFAVVNGDYIAL 337 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcc-------------cccc---ccccccCHHHhhhhhccCCCcEEEE
Confidence 6788887755 358899999875433221111000 0000 0000111111222 55555778888
Q ss_pred EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293 141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPH 219 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (358)
.+. |...+.+...+-.++ + ++...|.-..+..+. .-++.|..|| .+-++|.++++... ....-+.|.++..+|+
T Consensus 338 VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~d 412 (668)
T COG4946 338 VSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPD 412 (668)
T ss_pred Eec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCC
Confidence 886 677777765554333 2 356668888888777 5788899999 89999999877544 3445577999999995
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC----cEEEEecCCCCc
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQP 295 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~ 295 (358)
+ ..++++.....+.++|+.++ .....-....+-|+.+.|+|++ +++|-+--+| .|+++|+.+++.
T Consensus 413 G-K~~vvaNdr~el~vididng---------nv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 413 G-KKVVVANDRFELWVIDIDNG---------NVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred C-cEEEEEcCceEEEEEEecCC---------CeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeE
Confidence 4 58888888999999999988 3333334456789999999998 8888876665 499999999874
Q ss_pred eeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIG 324 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 324 (358)
..+.+- .+.=.+-+|.|+++++...+
T Consensus 482 y~vTT~---ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDVTTP---TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecCC---cccccCcccCCCCcEEEEEe
Confidence 333333 33344568999999865443
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=3.8e-08 Score=94.24 Aligned_cols=168 Identities=9% Similarity=0.152 Sum_probs=111.0
Q ss_pred EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecc---------------cccceeeEEEcCCCCcEEEEEeCCCc
Q 018293 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---------------HTDKVQAVAWNHHSPQILLSGSFDRS 189 (358)
Q Consensus 125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (358)
...++++|+++.++++.+.++.|++||..++... .+.+ .-.....++++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 4588999965777888888899999998876532 1111 11235679999998556777777899
Q ss_pred EEEEEcccCCCccce------------ee---------ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCC
Q 018293 190 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 248 (358)
Q Consensus 190 i~i~d~~~~~~~~~~------------~~---------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 248 (358)
|++||+.++...... .. .-.....+++++++ +++++-..++.|++||..++.......
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEec
Confidence 999998765421100 00 01134688899855 578888889999999997652110000
Q ss_pred CCCc----cEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 249 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 249 ~~~~----~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
.... -....+.-.....++++++| +++++-+.++.|++||+.+++.
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 0000 00011122356789999998 7888888899999999988753
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.4e-08 Score=84.07 Aligned_cols=279 Identities=13% Similarity=0.204 Sum_probs=161.1
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC------
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME------ 74 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------ 74 (358)
+.+||-|..|++-...+ +.+|-...-.....+.|. .+.++ .|||..+||+|=+..
T Consensus 216 v~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp---------~Vq~i----dfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHP---------GVQFI----DFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred EEecCCceEEEEEeccc------eeeecCccHHHHHhccCC---------Cceee----ecCCccceEEEecCCccccCc
Confidence 35789999998886553 444443331111222222 23333 459999999986532
Q ss_pred -----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293 75 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 149 (358)
Q Consensus 75 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 149 (358)
..+.|||+.++...+.+.... +....-.-..||.+ .+++|.-.. ..|.|
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF~~~~------------------------~~~~~WP~frWS~D-dKy~Arm~~-~sisI 330 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSFPVIK------------------------SPYLKWPIFRWSHD-DKYFARMTG-NSISI 330 (698)
T ss_pred ccCCCceEEEEEccccchhcceeccC------------------------CCccccceEEeccC-CceeEEecc-ceEEE
Confidence 478999999988776554321 11112234579988 667776655 57999
Q ss_pred EECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC-----CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293 150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 224 (358)
Q Consensus 150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (358)
|+..+..++..-.-.-..|....|+|.+ ++|+-=.. -..+.+..+-+.+.+....-+.-.-..+-|..++. +|
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd-yL 408 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD-YL 408 (698)
T ss_pred EecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc-EE
Confidence 9977654433222334668889999987 66654322 12344444444433332211221222344555333 44
Q ss_pred EEE----------ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCC
Q 018293 225 VVS----------LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSN 292 (358)
Q Consensus 225 ~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~ 292 (358)
+.- +.-.++.|+.++... .++.... -...|...+|-|.|.++.+..+. ..++.+|.+++
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKd--------Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKD--------IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccC--------CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 332 122246677777652 3333333 35678899999999554443333 34688898874
Q ss_pred --CCceeeEecCCCCceeEEEEEcCCCCeEEEEE--ccCCeEEEEEccC
Q 018293 293 --NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLS 337 (358)
Q Consensus 293 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~ 337 (358)
.++..+..+. ....+.+.|+|.|+++++.+ |..|.+.++|+..
T Consensus 480 ~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 480 NIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 2233333333 25577899999999755443 4578999999874
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.19 E-value=1.5e-07 Score=75.96 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=139.6
Q ss_pred ccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-CCCCcEE
Q 018293 61 DRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNIL 138 (358)
Q Consensus 61 ~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l 138 (358)
|.+ ++.++++--..+.|..|+..+..... .. . .....+.+. ++ + .+
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~~---~-~~~~G~~~~~~~-g-~l 54 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------ID---L-PGPNGMAFDRPD-G-RL 54 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------------EE---S-SSEEEEEEECTT-S-EE
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------------Ee---c-CCCceEEEEccC-C-EE
Confidence 355 78888888788999999987533211 01 1 116666777 55 4 45
Q ss_pred EEEEcCCeEEEEECCCCceeeeecc-----cccceeeEEEcCCCCcEEEEEeCC--------CcEEEEEcccCCCcccee
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKW 205 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~ 205 (358)
+.+..+ .+.++|..+++....... .....+.+++.++| ++.++.... |.+..++.. ++ .....
T Consensus 55 ~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~ 130 (246)
T PF08450_consen 55 YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVA 130 (246)
T ss_dssp EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEE
T ss_pred EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEEEe
Confidence 555554 456669988865433332 34567899999999 666665543 456666666 33 23234
Q ss_pred eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
..-...+.++|+|++..++++-+..+.|..|++....... ........+....+..-.+++..+| ++.++....+.|
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I 207 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRI 207 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEE
T ss_pred cCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEE
Confidence 4456678999999776566677888999999997542100 0001111222222347889999988 777777788999
Q ss_pred EEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEc
Q 018293 286 KLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGG 325 (358)
Q Consensus 286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~ 325 (358)
.++|.+ ++........ ...+++++|. ++...+++|.+
T Consensus 208 ~~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEETT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred EEECCC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence 999988 6644444444 3478999994 67666777653
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=6.9e-08 Score=83.18 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=136.4
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 142 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~ 142 (358)
++..+++++.+|.+..+|..+++....... ...+.+ ... . +..++.++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v--~-~~~v~v~~ 152 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLV--A-NGLVVVRT 152 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEE--E-CCEEEEEC
Confidence 567788888999999999987665432111 011111 111 1 23567778
Q ss_pred cCCeEEEEECCCCceeeeeccccccee-----eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-ecC---C---
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAA---D--- 210 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~---~--- 210 (358)
.+|.+..||.++|+.+.++........ +.... + ..++.+..++.+..+|.++++....... ... .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 899999999999998877654322111 11111 2 3577788889999999988765321110 000 0
Q ss_pred ---e-eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293 211 ---V-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 286 (358)
Q Consensus 211 ---i-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 286 (358)
+ ....+. +..+++++.+|.+..||..++ +....... ........ .+ ..+++++.+|.+.
T Consensus 230 ~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG---------~~~W~~~~--~~~~~p~~--~~-~~vyv~~~~G~l~ 292 (377)
T TIGR03300 230 LVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSG---------RVLWKRDA--SSYQGPAV--DD-NRLYVTDADGVVV 292 (377)
T ss_pred hhccCCccEEE---CCEEEEEEcCCEEEEEECCCC---------cEEEeecc--CCccCceE--eC-CEEEEECCCCeEE
Confidence 0 111111 237788888999999999887 33333321 11122222 23 5777888899999
Q ss_pred EEecCCCCceeeEecCCCC-ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 287 LWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 287 i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
.+|..+++. +....... ....+... .+. .+++++.+|.|+++|..+++.+.+.-
T Consensus 293 ~~d~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 293 ALDRRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEECCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 999998873 33321111 11222222 344 46778999999999999998876543
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=1.3e-09 Score=87.72 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=109.9
Q ss_pred eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293 170 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 246 (358)
Q Consensus 170 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 246 (358)
.+..++.+ ++++++..+....+++.+...... .........+++.+..+.. ...++..-|.++-+|+-+...
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~--- 141 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADS--- 141 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccc---
Confidence 34455565 777777777777677766544311 1122333445555555333 455554555555555544211
Q ss_pred CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEc
Q 018293 247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGG 325 (358)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~ 325 (358)
.+...+-+|-+.++.++++||+ ++++++..|..|+|-....... +.. .-+|...|..++.-++. .|++||
T Consensus 142 ----~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~--IesfclGH~eFVS~isl~~~~--~LlS~s 212 (390)
T KOG3914|consen 142 ----GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFV--IESFCLGHKEFVSTISLTDNY--LLLSGS 212 (390)
T ss_pred ----cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccc--hhhhccccHhheeeeeeccCc--eeeecC
Confidence 2334556899999999999998 9999999999999987765442 222 34699999999998775 488999
Q ss_pred cCCeEEEEEccCCCccccc
Q 018293 326 SKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~~ 344 (358)
.|++|++||+.+|+++...
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999999998643
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=6.6e-09 Score=89.55 Aligned_cols=194 Identities=9% Similarity=0.020 Sum_probs=112.3
Q ss_pred CccccCCCce-EEecCC---CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC
Q 018293 58 PLKDREKGNF-MAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE 133 (358)
Q Consensus 58 ~~~~s~~~~~-l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 133 (358)
.+.|+|||+. ++..+. +..|.++|+.+++... +....+......|+|+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------------------------lt~~~g~~~~~~~SPD 243 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------------------------IASSQGMLVVSDVSKD 243 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------------------------EecCCCcEEeeEECCC
Confidence 4456999984 554333 3568888876543211 1113344566789999
Q ss_pred CCcEEEEEEcC--CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCCccceeeecC
Q 018293 134 FRNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAA 209 (358)
Q Consensus 134 ~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~ 209 (358)
|..++++.+.+ ..|.++|+.+++.. .+..+........|+|||..++++....+ .|.++|+.+++....... +
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g 320 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--G 320 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--C
Confidence 76666666555 45777788777643 34333333445689999955555555545 477777776655332221 1
Q ss_pred CeeeEEEcCCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 210 DVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
. ....|+|++..++++.... ..|.+.|+..+. ...+... .......|+|||..++++...
T Consensus 321 ~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 2348999877666665443 367888887652 2222222 223358899999444444433
Q ss_pred CCc--EEEEecCCCC
Q 018293 282 DKM--VKLWDLSNNQ 294 (358)
Q Consensus 282 dg~--i~i~d~~~~~ 294 (358)
.+. +.+.++....
T Consensus 389 ~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 389 GNQSALGIIRLNYNK 403 (419)
T ss_pred CCcEEEEEEecCCCe
Confidence 333 6666765543
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=2.3e-09 Score=86.42 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=108.2
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
.+..++++++||++..+....++++...... .+.............+..+..+.. ...
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------------~kl~~~~~v~~~~~ai~~~~~~~s-v~v 124 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------------AKLLDVSCVPKRPTAISFIREDTS-VLV 124 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCc---------------------ceeeeEeecccCcceeeeeeccce-EEE
Confidence 3446899999999998888888887643320 001111111112233444444332 222
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEE
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAW 216 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~ 216 (358)
.-.++....+.+|....+.+ ..+-+|-..++.++|+||+ ++++++..|..|++-.....-.+ ....+|...|..++.
T Consensus 125 ~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred EeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence 22334455666776665443 3445699999999999999 99999999999999766543332 345679999999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcccCCC
Q 018293 217 DPHAEHSFVVSLEDGTIKGFDIRTAKS 243 (358)
Q Consensus 217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~ 243 (358)
-+ ++.+++++.|++|++||+++++.
T Consensus 203 ~~--~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 203 TD--NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred cc--CceeeecCCCCcEEEEecccCCc
Confidence 87 34689999999999999999854
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.9e-10 Score=89.71 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=126.1
Q ss_pred ecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC----Cccce
Q 018293 129 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFK 204 (358)
Q Consensus 129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~ 204 (358)
+|+-+-.-+-++.+.+-.|-+-|++++-. +.|. ..+.|.++.|...+ +++..|+.+|.|..+|++... .....
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56533112235666777899999988743 3444 56779999999877 899999999999999999762 33445
Q ss_pred eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE--EecCCCCcEEEEEeCC
Q 018293 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI--SYNPLVPNLLATGSTD 282 (358)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~d 282 (358)
.-|.+.|+++..-...+..+++++.+|.|++||+|..+. ...+..+.+|...-.-+ -+.+.. ..+++++.|
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD 367 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD 367 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence 678899999887775667899999999999999998632 13377778875433333 233433 688889999
Q ss_pred CcEEEEecCCCCceeeEecCCC--CceeEEEEEcC
Q 018293 283 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFSE 315 (358)
Q Consensus 283 g~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~ 315 (358)
...+||.+..++..+...+... ...+.+++|..
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999999986554444322 23455666654
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=3.3e-07 Score=76.04 Aligned_cols=241 Identities=11% Similarity=0.082 Sum_probs=133.2
Q ss_pred ccCCCcEEEEEEe---------cCCCceEEEEEEeccCCCCCceEeeceeecCCccc-ceeeecCCccccCCCceEEecC
Q 018293 3 INPNDAVIVCARN---------EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPL-CMAWLDCPLKDREKGNFMAVGS 72 (358)
Q Consensus 3 ~~p~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~ 72 (358)
++|+++.|.++.. +.| .|.+||....+ ...+..++..|- .+.-.+..++++|||++|++..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d----~V~v~D~~t~~-----~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTD----YVEVIDPQTHL-----PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCC----EEEEEECccCc-----EEeEEccCCCchhhccCccceEEECCCCCEEEEec
Confidence 7999999999977 443 78888887641 112222222211 0111112345699999999876
Q ss_pred -C-CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293 73 -M-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 150 (358)
Q Consensus 73 -~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 150 (358)
. +..|.+.|+.+.+.+....+. +...-...+++ ..+ +-+.||.....
T Consensus 124 ~~p~~~V~VvD~~~~kvv~ei~vp----------------------------~~~~vy~t~e~-~~~--~~~~Dg~~~~v 172 (352)
T TIGR02658 124 FSPSPAVGVVDLEGKAFVRMMDVP----------------------------DCYHIFPTAND-TFF--MHCRDGSLAKV 172 (352)
T ss_pred CCCCCEEEEEECCCCcEEEEEeCC----------------------------CCcEEEEecCC-ccE--EEeecCceEEE
Confidence 3 689999999876655543321 11111112221 111 12234443333
Q ss_pred ECCC-Ccee----eeecccccceee-EEEcC-CCCcEEEEEeCCCcEEEEEcccCCCccc-eee-----------ecCCe
Q 018293 151 DVAA-GKCN----LTLEHHTDKVQA-VAWNH-HSPQILLSGSFDRSVVMKDARISTHSGF-KWA-----------VAADV 211 (358)
Q Consensus 151 d~~~-~~~~----~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~-----------~~~~i 211 (358)
.+.+ ++.. ..+.....++.. -.|.+ ++ ..+....+ |.|.+.|+........ .+. .....
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 2221 1110 111110011100 03455 66 66666655 9999999654332110 010 12234
Q ss_pred eeEEEcCCCCCeEEEEe---------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-C
Q 018293 212 ESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-T 281 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~ 281 (358)
.-++++++++.+++... ..+.|.++|..+. +.+..+.. ...+..++++||+..+|++.. .
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 45999997775555332 2257999999887 55655554 356889999999942666555 6
Q ss_pred CCcEEEEecCCCCc
Q 018293 282 DKMVKLWDLSNNQP 295 (358)
Q Consensus 282 dg~i~i~d~~~~~~ 295 (358)
++.|.++|..+++.
T Consensus 321 s~~VsViD~~t~k~ 334 (352)
T TIGR02658 321 DKTLYIFDAETGKE 334 (352)
T ss_pred CCcEEEEECcCCeE
Confidence 78899999999873
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.12 E-value=2.9e-09 Score=80.97 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=98.8
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+-.++.++++..||.+.+++.+......... ...|.+ -.+.+.... ++.+.++
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-------------------------~~~~~~-~as~~~~~~-~~~i~s~ 150 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRI-------------------------PSIHSG-SASRKICRH-GNSILSG 150 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhc-------------------------cccccc-ccccceeec-ccEEecC
Confidence 3457789999999999999986411111000 000111 111122222 2233332
Q ss_pred E-----cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEE
Q 018293 142 S-----ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLA 215 (358)
Q Consensus 142 ~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~ 215 (358)
. .-+..+.|+++..+....-......|.+++-+|...+++++|+.||.+.+||.+....+ .....|+.+++.+-
T Consensus 151 ~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 151 GCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH 230 (319)
T ss_pred CcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhee
Confidence 1 12335556554333222112223449999999988789999999999999999987543 34557899999999
Q ss_pred EcCCCCCeEEEEecCCeEEEEEccc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
|+|.++..++++++||.+..||..+
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999999999999999874
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=1e-09 Score=95.10 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=154.8
Q ss_pred ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC-cEEE
Q 018293 61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILA 139 (358)
Q Consensus 61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~ 139 (358)
.+|.|+-+|.++.-|.+ +-|++..-. +... .+. -..-.|-...|+|... .+-+
T Consensus 32 i~p~grdi~lAsr~gl~-i~dld~p~~--ppr~---------------------l~h--~tpw~vad~qws~h~a~~~wi 85 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQGLY-IIDLDDPFT--PPRW---------------------LHH--ITPWQVADVQWSPHPAKPYWI 85 (1081)
T ss_pred eccccchhhhhhhcCeE-EEeccCCCC--Ccee---------------------eec--cCcchhcceecccCCCCceeE
Confidence 37889989999887754 556653111 1000 000 1112355667776521 2333
Q ss_pred EEEcCCeEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEE
Q 018293 140 SASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLA 215 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~ 215 (358)
+......-.+|++... ..-..+.+|...|+.+.|+|+.+..+++++.|-.+..||++........+ .-......++
T Consensus 86 Vsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 86 VSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVK 165 (1081)
T ss_pred EecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceee
Confidence 3344455678887533 33445678999999999999999999999999999999999876554333 3456678899
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
|+..+++ +.+.+..+.|++||.+.+ ..++..+.+|...|++++|...-...+.+.+.||+|+.||......
T Consensus 166 wnyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 166 WNYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred ecccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 9986665 455557778999999998 4788899999999999999876556889999999999999876543
Q ss_pred eeeEecCCCCceeEEEEEcCCCC
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSP 318 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~ 318 (358)
...... .-..+|..-++.|-|.
T Consensus 237 e~~~~v-tt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 237 ESKRTV-TTNFPIWRGRYLPFGE 258 (1081)
T ss_pred ccceec-cccCcceeccccccCc
Confidence 222222 2345777778887554
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=1.6e-07 Score=80.85 Aligned_cols=221 Identities=10% Similarity=0.081 Sum_probs=125.3
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
+..++.++.+|.|+.||..+++......... ..........++ .. + + .++.+..+
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~~~~~sp~----~~-~-~-~v~~~~~~ 199 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVT------------------PALTLRGSASPV----IA-D-G-GVLVGFAG 199 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCC------------------CceeecCCCCCE----EE-C-C-EEEEECCC
Confidence 4567777789999999998766543221100 000000011111 11 2 2 57778888
Q ss_pred CeEEEEECCCCceeeeeccccc----ce---eeEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293 145 KQVKIWDVAAGKCNLTLEHHTD----KV---QAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~~----~v---~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 215 (358)
+.+..+|.++|+.+........ .+ ..+.-+| .+ ..++.++.+|.+..+|.++++..-.. .. .......
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~W~~-~~-~~~~~p~ 276 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVLWKR-DA-SSYQGPA 276 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEEEee-cc-CCccCce
Confidence 9999999999987655431100 00 0000011 23 46778888999999999887653311 11 1112222
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
. .+..+++++.+|.+..+|..++ +.+...... .....+.... + ..+++++.+|.|+++|..+++
T Consensus 277 ~---~~~~vyv~~~~G~l~~~d~~tG---------~~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 277 V---DDNRLYVTDADGVVVALDRRSG---------SELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred E---eCCEEEEECCCCeEEEEECCCC---------cEEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence 2 2347788889999999999887 333332111 1112222222 3 688889999999999999988
Q ss_pred ceeeEecCCCCceeE-EEEEcCCCCeEEEEEccCCeEEEE
Q 018293 295 PSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIW 333 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vw 333 (358)
. +.....+...+. +..+. +++ |+.++.||.|+.+
T Consensus 342 ~--~~~~~~~~~~~~~sp~~~-~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 F--VARLKTDGSGIASPPVVV-GDG--LLVQTRDGDLYAF 376 (377)
T ss_pred E--EEEEEcCCCccccCCEEE-CCE--EEEEeCCceEEEe
Confidence 4 334443333322 22332 343 5567889998765
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=8.4e-10 Score=87.18 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=120.2
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293 172 AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 251 (358)
Q Consensus 172 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (358)
+|+-+-..+-++.+.+-.+.+-|+.++-... +...+.|.+..|.. ..+++..|+.+|.|..+|+|....-. ..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~----~~ 290 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGN----GW 290 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCC----Cc
Confidence 5553322233556667788888888775544 23667888888987 45699999999999999999863211 12
Q ss_pred ccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-eeeEecCCCCceeEE--EEEcCCCCeEEEEEccCC
Q 018293 252 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFS--VAFSEDSPFVLAIGGSKG 328 (358)
Q Consensus 252 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg 328 (358)
+. ...-|.+.|+++..-...+.+|++.+.+|+|++||.+.-+. ..+....+|...-.- +-..+... .+++++.|-
T Consensus 291 ~a-~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc 368 (425)
T KOG2695|consen 291 CA-QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC 368 (425)
T ss_pred ce-EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCee
Confidence 22 33458899999988773347888999999999999997662 136777777443222 23345555 577799999
Q ss_pred eEEEEEccCCCccccccccCcCC
Q 018293 329 KLEIWDTLSDAGISNRFSKYSKP 351 (358)
Q Consensus 329 ~i~vw~~~~~~~~~~~~~~~~~~ 351 (358)
..+||.+..+..+.+.-..+..+
T Consensus 369 ytRiWsl~~ghLl~tipf~~s~~ 391 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYSAS 391 (425)
T ss_pred EEEEEecccCceeeccCCCCccc
Confidence 99999999999887765555443
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=2.3e-06 Score=80.89 Aligned_cols=295 Identities=16% Similarity=0.262 Sum_probs=177.0
Q ss_pred cccCCCcEEEEEEecCCCc-eEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC---CCeE
Q 018293 2 TINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAI 77 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i 77 (358)
+...||.++++..-+...+ .-.+.+|+... .+....+ .++...-++.| .|.|+++|+... ...|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG----~L~stSE-~v~gLe~~l~W-------rPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREG----ELQSTSE-PVDGLEGALSW-------RPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCCc----eEEeccc-cCCCccCCccC-------CCCCCEEEEEEEcCCCcEE
Confidence 4678999999997744334 55677887763 3333222 44555556666 789999998764 3456
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK- 156 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~- 156 (358)
.+|.-+..+ .......+......|..+.|+++ +..||....|. |.+|-..+..
T Consensus 284 vFfErNGLr------------------------hgeF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 284 VFFERNGLR------------------------HGEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred EEEecCCcE------------------------eeeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceEEEeeCCEE
Confidence 666654211 11111122345678999999999 67888877655 9999887653
Q ss_pred -eeeeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc----cCCC----------------c-------------
Q 018293 157 -CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH----------------S------------- 201 (358)
Q Consensus 157 -~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~----------------~------------- 201 (358)
..+.+.. ....+..+.|+|..+..|...+.+|.+..++.. .... .
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch
Confidence 2233321 223455699999887888888887877665532 1100 0
Q ss_pred --cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE----------EeecCCceeEEEec
Q 018293 202 --GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----------LHAHDKAVCTISYN 269 (358)
Q Consensus 202 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~i~~~ 269 (358)
.........|.+++|++++. .+++-..||.+.+|............ ...... .......+..++|.
T Consensus 418 Ms~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (928)
T PF04762_consen 418 MSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKP-PKLLSSISLDSMDISDSELPLGSLRQLAWL 495 (928)
T ss_pred HhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccC-cchhhhcccccccccccccccccEEEEEEe
Confidence 00122456799999999654 58888899999999965542211000 001011 11123457888888
Q ss_pred CCCCcEEEEEeCC---CcEEEEecCCCC-ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 270 PLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 270 ~~~~~~l~~~~~d---g~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
.+. .+++....+ ..+.++++...+ .........-.+.+..+...++.. .++.-..+|.+...+....
T Consensus 496 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 496 NDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred CCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCCC
Confidence 766 555554443 568888875433 223333333455666666666654 2555677888886665543
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2.3e-09 Score=90.12 Aligned_cols=232 Identities=16% Similarity=0.240 Sum_probs=145.9
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
+.+-+++++.|.+|++|.+...... .........++.|+.+|.++.|-.+ ..++++ .
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~--------------------~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~S--c 802 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDE--------------------IGTSACQFTYQAHKKPIHDIGFLAD-LRSIAS--C 802 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCc--------------------cccceeeeEhhhccCcccceeeeec-cceeee--c
Confidence 4567899999999999998642211 1223345567789999999999988 446654 5
Q ss_pred CCeEEEEECCCCceeeeec--ccccceeeEEEcCC-CCcEEEEE-eCCCcEEEEEcccCCCccceee-----ecCCeeeE
Q 018293 144 DKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHH-SPQILLSG-SFDRSVVMKDARISTHSGFKWA-----VAADVESL 214 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~ 214 (358)
||.+++||.-.++++..+. ...+.+..+...++ ...+++.+ +...+++++|.+..+......- ....+.++
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 8899999998887765442 11223333333333 22444444 7789999999998765442222 23457889
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE-EecCCC
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL-WDLSNN 293 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i-~d~~~~ 293 (358)
+..+ .++.++++-.+|.|.+.|.+++ +.+.......-....++ .|.+ ..++....|.++.+ |....+
T Consensus 883 aVa~-~GN~lAa~LSnGci~~LDaR~G---------~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 883 AVAD-KGNKLAAALSNGCIAILDARNG---------KVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred Eecc-CcchhhHHhcCCcEEEEecCCC---------ceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCC
Confidence 9988 5568999999999999999998 43433333333333333 2333 57777777888888 877665
Q ss_pred CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.. .........+..-+ -.-|.. +++......+.+|.-
T Consensus 951 im--h~q~kpppepahfl--qsvgpS-LV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 951 IM--HLQDKPPPEPAHFL--QSVGPS-LVTAQNGNILGVYAD 987 (1034)
T ss_pred ee--eeccCCCCcchhhh--hccCce-eEEeccCcEEEEEec
Confidence 42 22222222221111 123442 666666667777753
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=7.1e-08 Score=84.54 Aligned_cols=291 Identities=12% Similarity=0.093 Sum_probs=181.6
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCcc---ccCC--CceEEecCCCCeE
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK---DREK--GNFMAVGSMEPAI 77 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~--~~~l~~g~~dg~i 77 (358)
.+|.| +|+.|+.. -+.+.|...-+......+|. ..+..++|.|.... +||. .-+||++...|.|
T Consensus 23 w~~~G-LiAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 23 WSPSG-LIAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cCccc-eEEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 44444 45555333 55555554433333333442 45568889764333 3433 3367888888999
Q ss_pred EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC---CCCcEEEEEEcCCeEEEEECCC
Q 018293 78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNILASASADKQVKIWDVAA 154 (358)
Q Consensus 78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~ 154 (358)
.+||+..... ...+..|..++..++|-+ +.+..|++-....++.+|+..+
T Consensus 92 il~d~~~~s~---------------------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 92 ILVDFVLASV---------------------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred EEEEehhhhh---------------------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 9999865332 224556888899999864 3235777777888999999999
Q ss_pred CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-------cceeeecC------------------
Q 018293 155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-------GFKWAVAA------------------ 209 (358)
Q Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~------------------ 209 (358)
|+.............|+.+.|-+.+.+...+..|.+.+.+.-..... .....|..
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 99998888777778889999977788888888888877765322111 00011100
Q ss_pred -------CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC-cEEEEEeC
Q 018293 210 -------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-NLLATGST 281 (358)
Q Consensus 210 -------~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~ 281 (358)
..-.++|+|.-.+.++.. -...+.++|++-. .++....-..+.+.-+.+.|+.. ..|++...
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~rd~LfclH~ 294 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHS 294 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence 022356788655555554 4567899999876 56666665666666677777653 47889999
Q ss_pred CCcEEEEecCCCCceeeE---ecC------------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 282 DKMVKLWDLSNNQPSCIA---SRN------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 282 dg~i~i~d~~~~~~~~~~---~~~------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
||.+.+|-.+........ .+. ...-.+......|..+..++.--.+|.+.+|++.+++.-
T Consensus 295 nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 295 NGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred CCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 999999986652210000 000 001122233344553334555556788999999976643
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=6.7e-09 Score=81.16 Aligned_cols=210 Identities=14% Similarity=0.258 Sum_probs=138.3
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-----eeeeecccc------------cceeeEEEcCC-CCcEEE
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHHT------------DKVQAVAWNHH-SPQILL 182 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~-~~~~l~ 182 (358)
....|+++.|... +.++++|...|.|.+|.-+... ....+++|. ..|..+.|..+ +...++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4567999999998 6799999999999999755332 233445543 45777888654 445778
Q ss_pred EEeCCCcEEEEEcccCCCcc-------------------------------------------ceeeecCCeeeEEEcCC
Q 018293 183 SGSFDRSVVMKDARISTHSG-------------------------------------------FKWAVAADVESLAWDPH 219 (358)
Q Consensus 183 ~~~~dg~i~i~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~ 219 (358)
..+.|.+|++|.+....... ....|...+.++.++.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 88899999999876431000 00123345778888875
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-----CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
.+ .+.+..|=.|.+|++...... -.+..+..|. .-|++..|+|..-+.+.-.+..|.|++-|++...
T Consensus 184 ~e--t~lSaDdLrINLWnl~i~D~s------FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 184 KE--TLLSADDLRINLWNLEIIDGS------FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred hh--eeeeccceeeeeccccccCCc------eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 43 344457888999998765221 1222333342 4588999999765677777889999999998432
Q ss_pred c--------------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 295 P--------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 295 ~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
. ..+..+..-...|..+.|+++|+| +++- .=-++++||+...+..
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-IlsR-dyltvkiwDvnm~k~p 314 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILSR-DYLTVKIWDVNMAKNP 314 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-EEEe-ccceEEEEecccccCC
Confidence 1 001111122346888999999996 4433 3468999999876543
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.6e-09 Score=85.09 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=164.2
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
..+++.+++.||.++.|.-... .-...+..+..|...|.+++.+-+ +.+++|.+.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d 73 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVED 73 (558)
T ss_pred hhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccc-ceeEeeccC
Confidence 4678999999999999975321 112334455678899999999988 668888777
Q ss_pred -CCeEEEEECCCCceeeeecccccceeeEEEc--CCCC--cEEEEEeCCCcEEEEEcccCCCc--cceeeecCCeeeEEE
Q 018293 144 -DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--HHSP--QILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAW 216 (358)
Q Consensus 144 -dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~--~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~ 216 (358)
|..++++|+++-..+..++. ......+.|. +... .+.++.-.++.+.++|-....+. .....|..+|.++.+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred cccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 99999999987655433331 1112223332 2211 23334456899999998766533 233457899999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcccCCC------CCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293 217 DPHAEHSFVVSLEDGTIKGFDIRTAKS------DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~ 290 (358)
.|.+ ..+++....|.|.-|.....-. ........-+..+........++.|+|++ ..+.+-+.|..|++++.
T Consensus 153 ~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF 230 (558)
T ss_pred eccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence 9954 4788888899999999874110 11111112223333345667899999998 88898889999999999
Q ss_pred CCCCceeeE------------------------------ecCCC-CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 291 SNNQPSCIA------------------------------SRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 291 ~~~~~~~~~------------------------------~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.+++..... .+..| ...-+.+.|...|.++| -|+-= .|+|.++.++.
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fll-y~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLL-YGTIL-GIKVINLDTNT 308 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEE-eecce-eEEEEEeecCe
Confidence 887632110 00111 12345678888999744 45544 48999999887
Q ss_pred ccc
Q 018293 340 GIS 342 (358)
Q Consensus 340 ~~~ 342 (358)
.++
T Consensus 309 v~r 311 (558)
T KOG0882|consen 309 VVR 311 (558)
T ss_pred EEE
Confidence 654
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.3e-09 Score=86.16 Aligned_cols=211 Identities=17% Similarity=0.113 Sum_probs=152.5
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC--C-ceeeeecccccceeeEEEcCCCCcEEEEEeC-CCcEEEEEcc
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDAR 196 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 196 (358)
|.+.|+.+.-... +++.+++.||.++.|--.. + +.+..+..|...|.+++.+.++ .++.+.+. |..++++|+.
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 8888888866654 5999999999999998543 1 3455667888999999999998 88888777 9999999998
Q ss_pred cCCCccceeeecCCeeeEEEcCCCC----CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 197 ISTHSGFKWAVAADVESLAWDPHAE----HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
+-.... ..........+.|....+ .+.+....+|.+.++|-+.... +....-..|..+|..+.++|.+
T Consensus 85 n~Dmin-miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 85 NFDMIN-MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred ccchhh-hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEEEEeeccc
Confidence 766543 112222222333322111 2233345689999999887632 4555667789999999999988
Q ss_pred CcEEEEEeCCCcEEEEecCC------CCc-------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 273 PNLLATGSTDKMVKLWDLSN------NQP-------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~~~------~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
..+++....|.|.-|.... .+. .-+..+........++.|+|++.. +.+-+.|..|+++++.+|+
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccch
Confidence 7888888889999998873 100 011222233456789999999995 8888899999999999998
Q ss_pred ccccc
Q 018293 340 GISNR 344 (358)
Q Consensus 340 ~~~~~ 344 (358)
.++..
T Consensus 235 lvqei 239 (558)
T KOG0882|consen 235 LVQEI 239 (558)
T ss_pred hhhhh
Confidence 76643
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.8e-08 Score=87.25 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=133.8
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
....++|++++ ..+|+-|+.+|.|++++.. +.+ .+...|... ..+| .++++|+.||++.+-.+-+.+.
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence 34678888887 4589999999999999965 333 333334433 4566 8999999999999998887766
Q ss_pred ccceeeecCCeeeEEEcCC----CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293 201 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 276 (358)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 276 (358)
.. ......++.+++++|+ ....+++|+..| +.++.-+-... +....+....++|.++.|. | +++
T Consensus 106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~--g-~lI 173 (846)
T KOG2066|consen 106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWR--G-NLI 173 (846)
T ss_pred ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEec--C-cEE
Confidence 55 5667789999999996 356799999988 77776554321 2222456668899999999 3 788
Q ss_pred EEEeCCCcEEEEecCCCCceeeEecCC----CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 277 ATGSTDKMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
|-++.+| |+|||..+.+......... .......+.|.++.+ |+.| ..-+|+|..++.
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK 234 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence 8888766 9999999887432222211 111234678888876 4444 445799998883
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.98 E-value=1.9e-07 Score=77.97 Aligned_cols=234 Identities=10% Similarity=0.145 Sum_probs=150.3
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
.+.+||.|.+|++.... -|.+|.-.....+... .| ..|..+.|+|. +++
T Consensus 37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----------------------------~~-~~V~~~~fSP~-~kY 85 (561)
T COG5354 37 YVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----------------------------RH-PDVKYLDFSPN-EKY 85 (561)
T ss_pred heeecCcchheehhhcc-ceEEccccchhheeee----------------------------ec-CCceecccCcc-cce
Confidence 34459999999988765 4779987654422211 13 45899999999 778
Q ss_pred EEEEEcCC---------------eEEEEECCCCceeeeecccccc--ee-eEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 138 LASASADK---------------QVKIWDVAAGKCNLTLEHHTDK--VQ-AVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 138 l~s~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
|.+-+..+ .+.+||+.++..+..+..-..+ .. -+.|+-++ .+++-. ....+.++++ +..
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCc
Confidence 88865543 4999999999999888765555 44 67888877 554444 4567999997 332
Q ss_pred Ccc-ceee-ecCCeeeEEEcCCCC-CeEEE-----EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293 200 HSG-FKWA-VAADVESLAWDPHAE-HSFVV-----SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271 (358)
Q Consensus 200 ~~~-~~~~-~~~~i~~~~~~~~~~-~~~~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 271 (358)
... .... ....+....|+|.++ ..++. ...++.+++|.+... ..+..-.-....-..+.|.+.
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~~~qLkW~~~ 233 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVSGVQLKWQVL 233 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeecccEEEEecC
Confidence 221 1111 236688889999522 22333 356788999998855 333332222233356888888
Q ss_pred CCcEEEEEe-----------CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe-EEEEEccCCeEEEEEccCC
Q 018293 272 VPNLLATGS-----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 272 ~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~ 338 (358)
| .+|+.-. ....+++++++.... .+ .. .-.++|...+|.|.++. .+++|-.+-.+.++|+...
T Consensus 234 g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V-~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 234 G-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PV-EK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred C-ceEEEEEEEeeecccceeccceEEEEeeccccc-ce-ec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 7 4443311 124588888875441 22 21 45789999999998764 3344457778889998765
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.6e-08 Score=79.13 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=136.6
Q ss_pred cccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293 116 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195 (358)
Q Consensus 116 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 195 (358)
..+.+|...|..++|+|...-++..++.+..|+|.|+++...+..+..+ ..+++++|.-+..+++.+|...|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 3566788999999999995558999999999999999999988888877 789999999998899999999999999999
Q ss_pred ccCCCccceee---ecCCeeeEEEcCC-----CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293 196 RISTHSGFKWA---VAADVESLAWDPH-----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 267 (358)
Q Consensus 196 ~~~~~~~~~~~---~~~~i~~~~~~~~-----~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 267 (358)
+..+....... ...+|..++.-+- .+.+++.... .+..|++....... .++..+ ...+.+.++.
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~-----p~vlel-e~pG~cismq 337 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL-----PCVLEL-EPPGICISMQ 337 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC-----Cccccc-CCCcceeeee
Confidence 97764332211 2234444332221 1223333322 25566665442211 222222 2244556666
Q ss_pred ecCCCCcEEEEEeCCCc------EEE-EecCCCCceeeEecCC---CCce---eEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293 268 YNPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNP---KAGA---VFSVAFSEDSPFVLAIGGSKGKLEIWD 334 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~l~~~~~dg~i~vw~ 334 (358)
..+.....|++.-.+.+ +-. -|..++.+++...... ...+ -..+.-.++..+++..++..+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 66655455555433211 111 1222333222211110 0000 112233456677777788888999999
Q ss_pred ccCCCcccccccc
Q 018293 335 TLSDAGISNRFSK 347 (358)
Q Consensus 335 ~~~~~~~~~~~~~ 347 (358)
..+.+.+.++...
T Consensus 418 ~~s~evvQ~l~~~ 430 (463)
T KOG1645|consen 418 PHSFEVVQTLALS 430 (463)
T ss_pred cchhheeeecccC
Confidence 9999888765544
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=3.9e-08 Score=87.57 Aligned_cols=183 Identities=16% Similarity=0.230 Sum_probs=138.8
Q ss_pred CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
+..++.|+....+..+|+.+.+..+...-....|.-|+.+ + +++.+|...|+|.+-|.++.+.+.....|.+.+..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4467788888889999999888776665444456666543 3 789999999999999999999988888899999888
Q ss_pred EEcCCCCCeEEEEec---------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 215 AWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
... ++++++++. |..|+|||+|.. +.+..+..+.++ .-+.|+|.-...+++++..|..
T Consensus 224 Dv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmm---------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 224 DVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMM---------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred ecc---CCeEEEeecccccccccccchhhhhhhhhh---------hccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 774 346776653 566899999987 333333334343 5678888776788899999999
Q ss_pred EEEec---CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 286 KLWDL---SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 286 ~i~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
.+-|. .+.. ..+.........+..+.++++++ .+|.|..+|.|.+|.-
T Consensus 291 q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 291 QFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeccccccCCCc-cceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 99993 3321 23444455556699999999999 5999999999999983
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=2e-06 Score=69.34 Aligned_cols=198 Identities=12% Similarity=0.141 Sum_probs=125.4
Q ss_pred EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc-CCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
++.|.+..+.++++-...+.|..|+..+++... +... . ...+.+. +++ . ++.+..++ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g-~-l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG-R-LYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS-E-EEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC-E-EEEEEcCc-eEEEecCCCcEEEEee
Confidence 567888547777777788999999998875433 3222 2 6677777 554 4 55555544 4555888765443222
Q ss_pred e-----ecCCeeeEEEcCCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 206 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 206 ~-----~~~~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
. .....+.+++.|++. +.++.... |.|..++.. + + .......-...+.|+|+|++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence 2 234578899999654 55554432 456666666 3 2 22222334556899999998
Q ss_pred CcEEEEEeCCCcEEEEecCCCCc-----eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 273 PNLLATGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
..++++-+..+.|..|++..... .....+....+..-.+++..+|+ ++++....+.|.+++.. |+.+...
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE
Confidence 44556777788899999864332 12223333334578899999998 67777778899999987 7765543
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.95 E-value=4e-08 Score=87.53 Aligned_cols=187 Identities=15% Similarity=0.205 Sum_probs=137.6
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
++..++.|+....+..+|+.+....+...+ ....|+-+..+ ++.+++|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---------------------------~a~~v~imR~N---nr~lf~G~t 195 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV---------------------------SASGVTIMRYN---NRNLFCGDT 195 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec---------------------------cCCceEEEEec---CcEEEeecc
Confidence 456677777777788888876544332111 22236666554 558999999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---------CCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
.|+|.+-|.++.+.++++..|.+.|..+.. .| +.|++++. |..|++||+|..+.+... .......-+
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P~fl 271 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGPQFL 271 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCchhh
Confidence 999999999999999999999999987665 45 67888875 456899999987765522 233334678
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~ 290 (358)
.|+|.-...+++.+..|...+-|..+.... ......+......+..+++++++ ..++.|..+|.|.+|.-
T Consensus 272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence 889977778999999999999995443211 12334444556669999999998 89999999999999983
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=3.7e-06 Score=67.50 Aligned_cols=182 Identities=18% Similarity=0.139 Sum_probs=113.2
Q ss_pred cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeec---C--
Q 018293 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVA---A-- 209 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~-- 209 (358)
..+++++.++.+..||..+|+.+.++.. ...+...... .+ ..+++++.++.+..+|..+++..... .... .
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 4677778999999999999998887764 3322222222 22 45677778889999999888875532 2111 1
Q ss_pred CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc----------e-eEEEecCCCCcEEEE
Q 018293 210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA----------V-CTISYNPLVPNLLAT 278 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----------i-~~i~~~~~~~~~l~~ 278 (358)
......+. +..++++..++.|..+|++++ +.+......... + ..+.+. ++ .++.
T Consensus 114 ~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~ 178 (238)
T PF13360_consen 114 SSSSPAVD---GDRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYV 178 (238)
T ss_dssp --SEEEEE---TTEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEE
T ss_pred cccCceEe---cCEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEE
Confidence 11222332 347888888999999999988 555555443321 1 223333 23 6666
Q ss_pred EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 279 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 279 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
++.++.+..+|+.+++.. .... . ..+... ...++.. ++.++.++.|..||+++++.+
T Consensus 179 ~~~~g~~~~~d~~tg~~~--w~~~-~-~~~~~~-~~~~~~~-l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 179 SSGDGRVVAVDLATGEKL--WSKP-I-SGIYSL-PSVDGGT-LYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECCTSSEEEEETTTTEEE--EEEC-S-S-ECEC-EECCCTE-EEEEETTTEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCCEE--EEec-C-CCccCC-ceeeCCE-EEEEeCCCEEEEEECCCCCEE
Confidence 777775443499999832 3333 1 222221 3456664 555668999999999999865
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.4e-09 Score=96.27 Aligned_cols=204 Identities=18% Similarity=0.176 Sum_probs=142.6
Q ss_pred eeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-c
Q 018293 111 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-S 189 (358)
Q Consensus 111 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~ 189 (358)
+.+....+..|+..-+|++|+-. .+.|+.|+..|.|+++++.+|........|..+|+.+.-+.+|...|.+++... -
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 45566677789999999999988 779999999999999999999999999999999999999999955555554444 5
Q ss_pred EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE-Ee---ecCCceeE
Q 018293 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LH---AHDKAVCT 265 (358)
Q Consensus 190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~---~~~~~i~~ 265 (358)
..+|++...-..... -..-.++.|+.. ...-+.|+......+||+.+.. +..+ +. +....-++
T Consensus 1169 saLW~~~s~~~~~Hs---f~ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~---------~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHS---FDEDKAVKFSNS-LQFRALGTEADDALLYDVQTCS---------PLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred HHHhccccccCcccc---ccccceeehhhh-HHHHHhcccccceEEEecccCc---------HHHHhcCcchhhhhhccc
Confidence 678998753222211 134567788774 3345566666789999999873 2222 11 12223377
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 266 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 266 i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
..|+|+. .+++ .|| .+||++..+ .+..+..... -..-.|+|.|..+++ -+ .|||+++-+.++.
T Consensus 1236 a~FsP~D-~LIl---ndG--vLWDvR~~~--aIh~FD~ft~-~~~G~FHP~g~eVII-NS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1236 AHFSPCD-TLIL---NDG--VLWDVRIPE--AIHRFDQFTD-YGGGGFHPSGNEVII-NS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred cccCCCc-ceEe---eCc--eeeeeccHH--HHhhhhhhee-cccccccCCCceEEe-ec-----hhhhhHHHHHHhc
Confidence 8999987 6665 455 379999875 3444443321 123469999986444 33 4799988776653
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=6e-07 Score=79.22 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=120.9
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
.+++|+-|+.+|.|++++.+..- .....|... ..+ +.++++|+.
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~-Gey~asCS~ 91 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILE-GEYVASCSD 91 (846)
T ss_pred hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccC-CceEEEecC
Confidence 57899999999999999986311 011123332 334 679999999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCC----CCcEEEEEeCCCcEEEEEcccCC--CccceeeecCCeeeEEEc
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD 217 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~ 217 (358)
||+|.|-.+-+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-+--. .........++|.++.|.
T Consensus 92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 9999999998888777666 4578999999998 236789999888 7777643211 112244567899999996
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
. ++++-++.+| |++||....+.....+... .... ....-..+.|.++. .|+.| ...+|+|..++.+
T Consensus 170 g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R-~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 170 G---NLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVR-PELFPPHLHWQDED--RLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred C---cEEEEecCCC-cEEEeccccceeeccCCCC--CCCC-cccCCCceEecCCC--eEEEe-cCCeEEEEEEecc
Confidence 4 4777777666 8999998874322111111 0000 11123457788754 45544 5557888888743
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.83 E-value=3.6e-09 Score=90.44 Aligned_cols=194 Identities=25% Similarity=0.335 Sum_probs=130.5
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
.+..++++|..+|.|.+-.+...... -.....+|....++++|++-+.+.||+|-
T Consensus 68 ~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~ar~Ct~lAwneLDtn~LAagl 122 (783)
T KOG1008|consen 68 NDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYARPCTSLAWNELDTNHLAAGL 122 (783)
T ss_pred CchhhhhhccccCceEEeecCCcccc-------------------------cceecccccccccccccccccHHHHHhhh
Confidence 44578999999999998877532111 01123368889999999997677888773
Q ss_pred ----cCCeEEEEECCCC--cee--eeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeee
Q 018293 143 ----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 213 (358)
Q Consensus 143 ----~dg~v~iwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 213 (358)
.|..+.|||+.++ .+. ..+.+ ......+++|..+. +++++|.....+.++|++...... ..-....+..
T Consensus 123 dkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG 200 (783)
T KOG1008|consen 123 DKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQG 200 (783)
T ss_pred hhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhh-hhhhhhhccc
Confidence 3567999999876 221 12222 33455688999777 888999999999999998432221 1122345667
Q ss_pred EEEcCCCCCeEEEEecCCeEEEEE-cccCCCCCCCCCCCccEEEee----cCCceeEEEecCCCCcEEEEEeCC-CcEEE
Q 018293 214 LAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTD-KMVKL 287 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~d-g~i~i 287 (358)
+...|...+++++.. ||.|.+|| .++-+ .++..+.. ....+..++|.|....++++...| ++|+.
T Consensus 201 ~tVdp~~~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 201 ITVDPFSPNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred ceecCCCCCceeccc-cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 778886666776665 99999999 44331 22222221 223589999999776677777764 67999
Q ss_pred EecCC
Q 018293 288 WDLSN 292 (358)
Q Consensus 288 ~d~~~ 292 (358)
+|+..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 99864
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.4e-08 Score=55.72 Aligned_cols=39 Identities=33% Similarity=0.646 Sum_probs=36.4
Q ss_pred CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293 155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 194 (358)
Q Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 194 (358)
++++.++.+|...|++++|+|++ .++++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 36788999999999999999998 8999999999999997
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6e-08 Score=78.53 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=112.4
Q ss_pred EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE
Q 018293 147 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 226 (358)
Q Consensus 147 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (358)
|++.+..+.+....+..+...|..++|+|....++..++.+..|++.|+++........ ....+++++|+-++.+.+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-ccCCceeeeeccCCcceeEE
Confidence 55666556666666677888999999999985689999999999999999987776443 34899999999999999999
Q ss_pred EecCCeEEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEe------cCCCCcEEEEEeCCCcEEEEecCC--CCce
Q 018293 227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISY------NPLVPNLLATGSTDKMVKLWDLSN--NQPS 296 (358)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~------~~~~~~~l~~~~~dg~i~i~d~~~--~~~~ 296 (358)
|..+|.|.+||++..+. .+..+.+ ...+|..++. .+.+ .+++..+.+ +..|++.. +.+.
T Consensus 254 Gl~nG~VlvyD~R~~~~--------~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG--------PLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred eccCceEEEEEccCCCc--------hHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence 99999999999998743 2222211 1233333332 3333 455544443 45566543 2222
Q ss_pred eeEecCCCCceeEEEEEcCCCCeEEEEEcc
Q 018293 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS 326 (358)
Q Consensus 297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 326 (358)
++.+.. ..+...+++..+..+++|++.-.
T Consensus 323 ~vlele-~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 323 CVLELE-PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cccccC-CCcceeeeeecCccceEEEEecC
Confidence 333332 34566677777766666666544
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=9e-06 Score=65.35 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=134.3
Q ss_pred CcccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-----CC
Q 018293 1 MTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-----ME 74 (358)
Q Consensus 1 l~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----~d 74 (358)
++++| ....++.++.-+. ...+++...+..+....... . ..+.-...||+||++|++.= ..
T Consensus 10 ~a~~p~~~~avafaRRPG~----~~~v~D~~~g~~~~~~~a~~----g-----RHFyGHg~fs~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGT----FALVFDCRTGQLLQRLWAPP----G-----RHFYGHGVFSPDGRLLYTTENDYETGR 76 (305)
T ss_pred eeeCCCCCeEEEEEeCCCc----EEEEEEcCCCceeeEEcCCC----C-----CEEecCEEEcCCCCEEEEeccccCCCc
Confidence 35788 5666777766663 56677776653332221100 0 00111345799999998853 35
Q ss_pred CeEEEEEcc-cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE------------
Q 018293 75 PAIEIWDLD-VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA------------ 141 (358)
Q Consensus 75 g~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~------------ 141 (358)
|.|-|||.. +.+. +..+..|.-.-..+.+.|++. .|+.+
T Consensus 77 G~IgVyd~~~~~~r---------------------------i~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 77 GVIGVYDAARGYRR---------------------------IGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGR 128 (305)
T ss_pred EEEEEEECcCCcEE---------------------------EeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCc
Confidence 899999997 2222 222333444455667788843 33333
Q ss_pred ------EcCCeEEEEECCCCceeee--e--cccccceeeEEEcCCCCcEEEEEeCCCc-------EEEEEcccCCCcc--
Q 018293 142 ------SADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRS-------VVMKDARISTHSG-- 202 (358)
Q Consensus 142 ------~~dg~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~-- 202 (358)
..+.++...|..+|+.+.+ + ..|...|..+++.++| ..++..-..|. +-+++.. +...
T Consensus 129 ~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~ 205 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG--GALRLL 205 (305)
T ss_pred eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC--Ccceec
Confidence 2334577777788887766 4 3377789999999998 55444433332 2333322 2111
Q ss_pred -----ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293 203 -----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277 (358)
Q Consensus 203 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 277 (358)
........+-+|++++++....+++-..|.+.+||..++ ..+.... -..+..++..+++ +++
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg---------~~~~~~~--l~D~cGva~~~~~--f~~ 272 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG---------RLLGSVP--LPDACGVAPTDDG--FLV 272 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC---------CEeeccc--cCceeeeeecCCc--eEE
Confidence 112345779999999977656677778889999999987 3333332 2345667766654 555
Q ss_pred EEeCCCcEE
Q 018293 278 TGSTDKMVK 286 (358)
Q Consensus 278 ~~~~dg~i~ 286 (358)
+.+ .|.+.
T Consensus 273 ssG-~G~~~ 280 (305)
T PF07433_consen 273 SSG-QGQLI 280 (305)
T ss_pred eCC-CccEE
Confidence 544 45443
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.80 E-value=1e-05 Score=70.14 Aligned_cols=223 Identities=8% Similarity=0.027 Sum_probs=124.6
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
+..++++..+|.|.-+|..+++......... ......+...++. . + + .++.++.+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~~~~~sP~v----~-~-~-~v~~~~~~ 214 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDV------------------PSLTLRGESAPAT----A-F-G-GAIVGGDN 214 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCC------------------CcccccCCCCCEE----E-C-C-EEEEEcCC
Confidence 4466677788999999998877654321100 0000011111211 1 1 2 46667788
Q ss_pred CeEEEEECCCCceeeeeccccc-------ceeeEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293 145 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 215 (358)
|.+..+|.++|+.+........ ....+.-+| .+ ..++.++.+|.+..+|..+++..-.. ... ....+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~-~~~-~~~~~~ 291 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR-EYG-SVNDFA 291 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee-cCC-CccCcE
Confidence 9999999999987665431110 000111122 23 45677778999999999887654311 111 111222
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
. .+..++.++.+|.+..+|..+++ .+.....- .....+.... + ..|+.++.+|.+.++|..+++
T Consensus 292 ~---~~~~vy~~~~~g~l~ald~~tG~---------~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 292 V---DGGRIYLVDQNDRVYALDTRGGV---------ELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred E---ECCEEEEEcCCCeEEEEECCCCc---------EEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence 2 23467778889999999998873 22221110 1112222222 3 578888999999999999998
Q ss_pred ceeeEecCCCCceeEE-EEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 295 PSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
..-.... ....+.+ ..+ .+++ |+.++.||.|+.++.
T Consensus 357 ~~~~~~~--~~~~~~s~P~~-~~~~--l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 357 FVAQQKV--DSSGFLSEPVV-ADDK--LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEEc--CCCcceeCCEE-ECCE--EEEEeCCceEEEEeC
Confidence 4333322 2222222 222 2443 566889999988764
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.2e-08 Score=55.92 Aligned_cols=37 Identities=32% Similarity=0.652 Sum_probs=33.3
Q ss_pred cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293 114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 151 (358)
Q Consensus 114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 151 (358)
+...+.+|.+.|++++|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 34466789999999999999 78999999999999997
No 315
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.80 E-value=4.7e-06 Score=65.91 Aligned_cols=204 Identities=15% Similarity=0.176 Sum_probs=118.1
Q ss_pred cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
+.+-...++.|+|+|+.+.++++....+.|..++. +|+.++.+.-. .+....+++..++ .++++.-.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEe
Confidence 33555679999999986778888888899988886 57777777533 2457788888777 666666668999999984
Q ss_pred cCCCcc-c------e----eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE--------Ee
Q 018293 197 ISTHSG-F------K----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT--------LH 257 (358)
Q Consensus 197 ~~~~~~-~------~----~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--------~~ 257 (358)
...... . . ......+..++|+|.++ .++++-+..-..+|.++.... ...... ..
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~------~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPG------GFDLFVSDDQDLDDDK 167 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-------SS--EEEE-HHHH-HT
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccC------ccceeecccccccccc
Confidence 432211 0 0 11335689999999655 555666666677787765210 011111 11
Q ss_pred ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-------CceeEEEEEcCCCCeEEEEEccCCeE
Q 018293 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKL 330 (358)
Q Consensus 258 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i 330 (358)
.....+.++.++|..+++++....+..|..+| ..+++.....+..- -..--.|+|.++|. ++++ ++-+.+
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIv-sEpNlf 244 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIV-SEPNLF 244 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEE-ETTTEE
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEE-cCCceE
Confidence 23345789999998768888888888999999 56665455555431 12466899999997 5554 455566
Q ss_pred EEE
Q 018293 331 EIW 333 (358)
Q Consensus 331 ~vw 333 (358)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.3e-06 Score=77.66 Aligned_cols=204 Identities=11% Similarity=0.169 Sum_probs=133.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
++.+..+|.|+.+|.|.+.+-. ....+.++.+...|-..-+.-++.++|++.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhhcccCceEEEEE
Confidence 7889999999999999888753 222234455666633333444436788888
Q ss_pred EcCC-----eEEEEECCCC------ceee--eec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc--cCC--
Q 018293 142 SADK-----QVKIWDVAAG------KCNL--TLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--IST-- 199 (358)
Q Consensus 142 ~~dg-----~v~iwd~~~~------~~~~--~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~-- 199 (358)
+.|+ .+++|+++.- .++. .+. ....++.+++.+.+- ..+++|-.+|.|..+.-. ..+
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc
Confidence 7775 4999998643 2221 111 135678889999886 889999999999998532 222
Q ss_pred CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
..........+|+.+++..++...+++.+ ...|.+|.+... ......+..|....+|..+++.. .-++++
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t-~qfIca 232 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGT-YQFICA 232 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCC-ccEEEe
Confidence 22223345678999999886665334433 457899999844 12344577788899999999865 324444
Q ss_pred eCCCcEEEEecCCCCceeeEecC-CCCce
Q 018293 280 STDKMVKLWDLSNNQPSCIASRN-PKAGA 307 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~~~~-~~~~~ 307 (358)
+ +..+.+||....++ ...+. +|...
T Consensus 233 ~-~e~l~fY~sd~~~~--cfaf~~g~kk~ 258 (933)
T KOG2114|consen 233 G-SEFLYFYDSDGRGP--CFAFEVGEKKE 258 (933)
T ss_pred c-CceEEEEcCCCcce--eeeecCCCeEE
Confidence 3 34699999886663 34444 55443
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=1e-05 Score=65.08 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=130.3
Q ss_pred EEEEecCCCCCcEEEEEEcCCe-EEEEECCCCceeeeecccccce--eeEEEcCCCCcEEEEEeC-----CCcEEEEEcc
Q 018293 125 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDAR 196 (358)
Q Consensus 125 v~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~ 196 (358)
...++.+|.....++.+-.-|+ ..+||..+++....+....+.- -.-.|+++| ++|++.-. .|.|-+||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence 3467788865777777777664 7789999998887765433221 136899999 77777643 5789999998
Q ss_pred -cCCCccceeeecCCeeeEEEcCCCCCeEEEEe-----------------cCCeEEEEEcccCCCCCCCCCCCccEE--E
Q 018293 197 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----------------EDGTIKGFDIRTAKSDPDSTSQQSSFT--L 256 (358)
Q Consensus 197 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~ 256 (358)
.-+.+.....+.-....+.+.|++..++++-+ .+.++...|..++ ..+.+ +
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~L 156 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVEL 156 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeeec
Confidence 33333333344455677888997654444321 1223444555554 33333 3
Q ss_pred --eecCCceeEEEecCCCCcEEEEEeCCCc-------EEEEecCCCCceeeEec-----CCCCceeEEEEEcCCCCeEEE
Q 018293 257 --HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASR-----NPKAGAVFSVAFSEDSPFVLA 322 (358)
Q Consensus 257 --~~~~~~i~~i~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~ 322 (358)
..|...|.-+++.++| ..++..-..|. |.+++.... ...... ....+.+-+|++++++..+.+
T Consensus 157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 3467789999999987 55554444332 333333221 111111 123467889999999997677
Q ss_pred EEccCCeEEEEEccCCCcccc
Q 018293 323 IGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 323 ~~~~dg~i~vw~~~~~~~~~~ 343 (358)
|+=..|.+.+||..+++.+..
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ECCCCCEEEEEECCCCCEeec
Confidence 777889999999999887653
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.78 E-value=2.2e-06 Score=79.20 Aligned_cols=235 Identities=15% Similarity=0.213 Sum_probs=143.8
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
.|..+++.++.+..+|.|.+-|..+..... ...-...|.+++|+|+ ...++
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~ei----------------------------vg~vd~GI~aaswS~D-ee~l~ 125 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLELEI----------------------------VGNVDNGISAASWSPD-EELLA 125 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccceee----------------------------eeeccCceEEEeecCC-CcEEE
Confidence 345677888888889999888776433211 1124578999999999 77888
Q ss_pred EEEcCCeEEEEECC----C-------------------Cceeeeeccc---------------------ccceeeEEEcC
Q 018293 140 SASADKQVKIWDVA----A-------------------GKCNLTLEHH---------------------TDKVQAVAWNH 175 (358)
Q Consensus 140 s~~~dg~v~iwd~~----~-------------------~~~~~~~~~~---------------------~~~v~~~~~~~ 175 (358)
..+..+++.+-+-. . |+....|++. .+.=+++.|--
T Consensus 126 liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg 205 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG 205 (1265)
T ss_pred EEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc
Confidence 88887777665421 0 0111122210 11123589999
Q ss_pred CCCcEEEEEe----CC-CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE---ecCCeEEEEEcccCCCCCCC
Q 018293 176 HSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDS 247 (358)
Q Consensus 176 ~~~~~l~~~~----~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~ 247 (358)
|| .++++.. .+ ..|++||.+ +............-.+++|-|.| ..+++- +.|+.|.+|.-+....
T Consensus 206 Dg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h---- 278 (1265)
T KOG1920|consen 206 DG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH---- 278 (1265)
T ss_pred CC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc----
Confidence 98 7777732 23 789999987 43333233344556789999954 466653 3566799998765422
Q ss_pred CCCCccEEEeecCCceeEEEecCCCCcEEEE---EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293 248 TSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 324 (358)
............++..++|+.++ ..|++ ......|++|-+.+........+.-..... +.|+|...+-+..-
T Consensus 279 --g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~ 353 (1265)
T KOG1920|consen 279 --GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVL 353 (1265)
T ss_pred --cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEE
Confidence 11122223334458999999988 77776 444455999999887654444443332222 67777655444444
Q ss_pred ccCCeEEEEEc
Q 018293 325 GSKGKLEIWDT 335 (358)
Q Consensus 325 ~~dg~i~vw~~ 335 (358)
..+|...++++
T Consensus 354 ~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 354 RESGQRLVRDF 364 (1265)
T ss_pred ecCCcEEEEEE
Confidence 45666555554
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.7e-06 Score=77.07 Aligned_cols=201 Identities=13% Similarity=0.125 Sum_probs=133.7
Q ss_pred cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccc-eeeEEEcCCCCcEEEEEeCCCc-----EEEEEccc
Q 018293 124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRS-----VVMKDARI 197 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~ 197 (358)
.|+|+ ++. +..++.|+.+|.|.+.+ +..+.++.++.+... |..+....+. .+|++.++|+. +++||++.
T Consensus 27 ~isc~--~s~-~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCC--SSS-TGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEE--cCC-CceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccc
Confidence 55554 555 55899999999999987 445566788887777 5544444433 67888777654 89999875
Q ss_pred CCCcc--------ceee-----ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293 198 STHSG--------FKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264 (358)
Q Consensus 198 ~~~~~--------~~~~-----~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (358)
.+... .... ...++.+++.+.+ -..+|+|-.+|.|..+.-.-.+.. .....-......+|+
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDr-----gsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDR-----GSRQDYSHRGKEPIT 175 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcc-----ccceeeeccCCCCce
Confidence 42111 1111 2456888999885 568999999999998854332111 022222233467899
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.+++..++...+.+++ ...|.+|.+.... ........|..++.|..+++.... +++++ +..+.+|+....+
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence 9999998855344444 3569999998544 345557788889999999987664 44444 3468999886433
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.77 E-value=3.4e-05 Score=65.74 Aligned_cols=287 Identities=15% Similarity=0.161 Sum_probs=145.1
Q ss_pred cCCCcEEEEEEecCC----CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293 4 NPNDAVIVCARNEDD----VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 79 (358)
Q Consensus 4 ~p~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 79 (358)
|||++.++....... ...-.+++|+..++ .+...... ....... .|||+|+.+|... ++.|.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~---~~~~l~~~--~~~~~~~-------~~sP~g~~~~~v~-~~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG---EITPLTPP--PPKLQDA-------KWSPDGKYIAFVR-DNNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT---EEEESS-E--ETTBSEE-------EE-SSSTEEEEEE-TTEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC---ceEECcCC--ccccccc-------eeecCCCeeEEEe-cCceEE
Confidence 689999999654321 12347888888875 22222111 1122233 3499999999885 678999
Q ss_pred EEcccccCcCceeecCCcccccccccccCCceeccccccCCC-cccEEEEecCCCCCcEEEEEEc-CC------------
Q 018293 80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASA-DK------------ 145 (358)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~-dg------------ 145 (358)
++..++...+ .. ..+ ... . .....-...+.- -+.-..+-|||++ ++||.... +.
T Consensus 68 ~~~~~~~~~~-lT-~dg-~~~-i-------~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 68 RDLATGQETQ-LT-TDG-EPG-I-------YNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp ESSTTSEEEE-SE-S---TTT-E-------EESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESS
T ss_pred EECCCCCeEE-ec-ccc-cee-E-------EcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCC
Confidence 9876552211 10 010 000 0 000000000000 0112456788884 44444322 22
Q ss_pred -----------------------eEEEEECCCCceee-e-e---cccccceeeEEEcCCCCcEEEE-EeCC---CcEEEE
Q 018293 146 -----------------------QVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQILLS-GSFD---RSVVMK 193 (358)
Q Consensus 146 -----------------------~v~iwd~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~~l~~-~~~d---g~i~i~ 193 (358)
.+.|+|+.+++... . . ......+..+.|.+++..+++. ...+ ..+.++
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~ 215 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC 215 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence 24445555554321 1 1 1234567888999988323333 2322 236667
Q ss_pred EcccCCCccceee-ecCC---eeeEEEc-CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE-EE
Q 018293 194 DARISTHSGFKWA-VAAD---VESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-IS 267 (358)
Q Consensus 194 d~~~~~~~~~~~~-~~~~---i~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~ 267 (358)
|..++........ .... .....+. +++..++.....+|.-++|-+.... .....+....-.|.. +.
T Consensus 216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--------~~~~~lT~G~~~V~~i~~ 287 (353)
T PF00930_consen 216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--------GKPRQLTSGDWEVTSILG 287 (353)
T ss_dssp EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--------SEEEESS-SSS-EEEEEE
T ss_pred ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--------cceeccccCceeecccce
Confidence 7766554332222 1222 2345554 6677777777788866665555431 233455555556644 67
Q ss_pred ecCCCCcEEEEEeCCC----cEEEEecC-CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc
Q 018293 268 YNPLVPNLLATGSTDK----MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 326 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg----~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 326 (358)
+++++..+.+++..++ .|+.-++. .+. ...+....+.-..+.|||++++++.+++.
T Consensus 288 ~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 288 WDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred EcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 7888756666776633 46566666 444 33333333323689999999987776654
No 321
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2.1e-07 Score=81.02 Aligned_cols=202 Identities=17% Similarity=0.266 Sum_probs=139.1
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc---------------eeeeecccccceeeEEEcCCCCcEEEEEe
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---------------CNLTLEHHTDKVQAVAWNHHSPQILLSGS 185 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (358)
......|++|+.. ..++|+|+.||.+++..+.+.. .-+++.+|...|.-+.|+... +.|-++.
T Consensus 13 nnvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD 90 (1189)
T ss_pred CCceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence 4467899999998 5699999999999999876431 234667999999999999887 7899999
Q ss_pred CCCcEEEEEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293 186 FDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263 (358)
Q Consensus 186 ~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (358)
.+|.|.+|-+-.+.-... .....+-|.+++|+.+| ..++....||.|.+=.+...+ +..-.-.....
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR----------IwgKeLkg~~l 159 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR----------IWGKELKGQLL 159 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce----------ecchhcchhec
Confidence 999999999887754322 23345678999999965 477777888888776665431 11111111234
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEecCCCC-----ceeeEe----cCCCCceeEEEEEc--------CCCCeEEEEEcc
Q 018293 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-----PSCIAS----RNPKAGAVFSVAFS--------EDSPFVLAIGGS 326 (358)
Q Consensus 264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~----~~~~~~~v~~~~~~--------~~~~~~l~~~~~ 326 (358)
..+.|++|. ..++.+-..|.+.+||.+..- ..+... +......|-.+.|. |+.+ .|+.+-.
T Consensus 160 ~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~ 237 (1189)
T KOG2041|consen 160 AHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYA 237 (1189)
T ss_pred cceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEc
Confidence 578999988 677777778999999976531 111111 11112235555553 4666 5777888
Q ss_pred CCeEEEEEccC
Q 018293 327 KGKLEIWDTLS 337 (358)
Q Consensus 327 dg~i~vw~~~~ 337 (358)
+|.+.+-.-.+
T Consensus 238 nGr~QiMR~eN 248 (1189)
T KOG2041|consen 238 NGRMQIMRSEN 248 (1189)
T ss_pred CceehhhhhcC
Confidence 88777654433
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.77 E-value=1.7e-06 Score=74.20 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=89.4
Q ss_pred cCCeeeEEEcCCCCCeEEEE----ecCCe----EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 208 AADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
+....++.|+-..++.+.+- +.+|. -.+|++...+. ......-......+.+++++|+. ..++.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvlG 277 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVLG 277 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEEE
Confidence 34456677776556566553 23443 34666654421 01112223457789999999987 899999
Q ss_pred eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293 280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 351 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 351 (358)
+.||.|.+||...+.. . .....-..+.++|+|+|. ++++|+..|.+.+||+.-...-.+...+...|
T Consensus 278 C~DgSiiLyD~~~~~t--~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P 344 (545)
T PF11768_consen 278 CEDGSIILYDTTRGVT--L--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATP 344 (545)
T ss_pred ecCCeEEEEEcCCCee--e--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCC
Confidence 9999999999877642 1 112334577899999999 68889999999999998766555555554433
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=2.2e-05 Score=68.04 Aligned_cols=230 Identities=10% Similarity=0.043 Sum_probs=131.9
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 142 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~ 142 (358)
++..++.++.+|.+.-+|..+++..-..... ..+.+ .... + + .++.+.
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----------------------------~~~~ssP~v~-~-~-~v~v~~ 167 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA----------------------------GEALSRPVVS-D-G-LVLVHT 167 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCC----------------------------CceecCCEEE-C-C-EEEEEC
Confidence 3566777888999999999887765532210 11111 1111 2 3 566778
Q ss_pred cCCeEEEEECCCCceeeeecccccceee-EEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceee-ecC------Cee
Q 018293 143 ADKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAA------DVE 212 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~------~i~ 212 (358)
.++.+..+|.++|+.+............ ..-+| .+ ..++.++.+|.+..+|..+++..-.... ... ...
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLV 246 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccc
Confidence 8899999999999988777532111000 00011 12 3466777889999999887765432110 000 000
Q ss_pred eEEEcCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293 213 SLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 213 ~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
.+.-+|- .+..+++++.+|.+..+|..++ +.+..... .....+.. .+ ..++.++.+|.+..+|..
T Consensus 247 ~~~~sP~v~~~~vy~~~~~g~l~ald~~tG---------~~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAYNGNLVALDLRSG---------QIVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTR 312 (394)
T ss_pred ccCCCcEEECCEEEEEEcCCeEEEEECCCC---------CEEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECC
Confidence 1111110 1236777778999999999887 33333221 11112222 23 567778889999999999
Q ss_pred CCCceeeEecCCCC-ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 292 NNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 292 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
+++. +....... ....+.... ++ .++.++.||.+.+.|..+|+.+.+.
T Consensus 313 tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 313 GGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 8873 22221111 111222221 33 3666889999999999999877553
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=6e-09 Score=92.42 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=135.0
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
+|+-+.++|++|+..|.|++|++.++.... ...+|..+|+-+.-+.+|..+|.
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccc---------------------------cccccccccccccccCCcceeee
Confidence 458899999999999999999999876654 34479999999999999665565
Q ss_pred EEEcCC-eEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee----eecCCeee
Q 018293 140 SASADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVES 213 (358)
Q Consensus 140 s~~~dg-~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~ 213 (358)
+++... ...+|++.. +...+.+.+ -.++.|+... ..-+.|+......+||+++........ .....-++
T Consensus 1161 sss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred eccccCchHHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 555544 578999864 445555543 4578888765 455566666788999999987654322 22334478
Q ss_pred EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
+.|+|.+. +++ .|| .+||.+.. ..++.+...... -.-.|+|.| .-++.-+. |||+++-
T Consensus 1236 a~FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~-~~G~FHP~g-~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1236 AHFSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDY-GGGGFHPSG-NEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred cccCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheec-ccccccCCC-ceEEeech-----hhhhHHH
Confidence 89999654 333 355 47999987 445555443322 234699998 66666554 8999987
Q ss_pred CceeeEecCCCCceeEEEEEcCCCC
Q 018293 294 QPSCIASRNPKAGAVFSVAFSEDSP 318 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~~~~~ 318 (358)
+. +..... -.-..+.|+..|.
T Consensus 1294 ~l--Lh~VP~--Ldqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1294 KL--LHSVPS--LDQCAVTFNSTGD 1314 (1516)
T ss_pred HH--HhcCcc--ccceEEEeccCcc
Confidence 63 222221 1123456666665
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.68 E-value=7.4e-06 Score=71.57 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=90.1
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL 82 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~ 82 (358)
+.-++..++.|.+.+ .+|+|+...+....+.... .....++..+ |++..++|.|+..|.|.++.+
T Consensus 41 ~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~~----~~~~~~~~~v------s~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNEG----ATGITCVRSV------SSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred eecCCceEEEecccc-----eEEEEecCchhhhcccccC----ccceEEEEEe------cchhHhhhhhcCCceEEeehh
Confidence 345677888888777 8999998876433333221 1222233332 678889999999999999998
Q ss_pred ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----cee
Q 018293 83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCN 158 (358)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~ 158 (358)
+.........+. ..-..|...|+|++|+++ +..+++|...|.|..-.+... -..
T Consensus 106 ~~~~p~~~~~~t---------------------~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~~~~~~~~ 163 (726)
T KOG3621|consen 106 NKELPRDLDYVT---------------------PCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSRQAFLSKS 163 (726)
T ss_pred hccCCCcceeec---------------------cccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechhhhhcccc
Confidence 863322222111 111238899999999999 679999999999999888762 112
Q ss_pred eeecccccceeeEEEcC
Q 018293 159 LTLEHHTDKVQAVAWNH 175 (358)
Q Consensus 159 ~~~~~~~~~v~~~~~~~ 175 (358)
+.+-...+.|..+....
T Consensus 164 q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 164 QEILSEDSEIVQLDYLQ 180 (726)
T ss_pred ceeeccCcceEEeeccc
Confidence 23333456777776654
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.67 E-value=6.8e-06 Score=70.77 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=119.1
Q ss_pred CcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEEc
Q 018293 121 HTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA 195 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~ 195 (358)
-...+..-+|+|++..+....-.. ..+.++|+++++...... ....-..-+|+|+|..++++...||. |.++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345566778999965544333222 358999999886544443 23334557899999777888888886 555566
Q ss_pred ccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 275 (358)
....... +....+.-..-.|+|+|..++++.+..|.-.+|-..... .....+......-..-.|+|+|..+
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--------~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--------SQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--------CceeEeeccCCCCcCccCCCCCCEE
Confidence 6665333 233333344678999999888888888876655554331 2223333333333378899999544
Q ss_pred EEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293 276 LATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 276 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~ 335 (358)
++....+|. |.+.|+.++....... .......-.|.+++..++.+++.-+.=.++.+
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~ 399 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQGGGSVLSLV 399 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence 445544455 6677776665212222 22233345778888765554444333333333
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.66 E-value=1.2e-08 Score=87.40 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=136.2
Q ss_pred CcccEEEEecCCCCC-cEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEe----CCCcEEEE
Q 018293 121 HTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMK 193 (358)
Q Consensus 121 h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~ 193 (358)
....+.|++++-+.. .+++.|..+|.|.+-..+...- -....++..++++++|++-+.+.|++|- .|..+.+|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 345678888765533 5889999999999988764422 2344667889999999997646666653 36689999
Q ss_pred EcccCCC--c---cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293 194 DARISTH--S---GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268 (358)
Q Consensus 194 d~~~~~~--~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 268 (358)
|+.+.-. . ...........+++|.. +..++.+|.....+.++|+|... .......+..+..+..
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~----------~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL----------DSVSSVNTKYVQGITV 203 (783)
T ss_pred ecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh----------hhhhhhhhhhccccee
Confidence 9987621 1 11112334566888885 56688999999999999999431 1111223345677888
Q ss_pred cCCCCcEEEEEeCCCcEEEEe-cCCCCceeeEecCCC----CceeEEEEEcCCCCeEEEEEccC-CeEEEEEcc
Q 018293 269 NPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASRNPK----AGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTL 336 (358)
Q Consensus 269 ~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d-g~i~vw~~~ 336 (358)
.|-.++++++-. ||.|.+|| .++-+. .+...... ...+..++|+|....++++...| ++|++|++.
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 885557877765 99999999 433221 12222211 22488999999765567766654 789999985
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.60 E-value=8.9e-05 Score=63.98 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=82.0
Q ss_pred ccEEEEecCCCCCcEEEEE----EcCCe----EEEEECCCCcee----eeecccccceeeEEEcCCCCcEEEEEeCCCcE
Q 018293 123 DSVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~----~~dg~----v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 190 (358)
....++.|+-..++.+.+. +.+|. -++|++...+.. ..+ .....+.+++++|+. ..++.|+.||+|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeE
Confidence 3456777876545555554 23343 456666554321 122 367789999999999 889999999999
Q ss_pred EEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 191 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 191 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
.+||...+... .....-.++.++|+|++ .++++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 99998766433 23445568899999954 59999999999999999765
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.57 E-value=0.00014 Score=59.40 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=147.9
Q ss_pred EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----------CCCeEEEEEcccccCcCcee
Q 018293 23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHV 92 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------~dg~i~vw~~~~~~~~~~~~ 92 (358)
++++++...+ .+...-....-. .+..||+++.+++++ ..-.|.+||..+......+.
T Consensus 18 rv~viD~d~~---k~lGmi~~g~~~----------~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 18 RVYVIDADSG---KLLGMIDTGFLG----------NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp EEEEEETTTT---EEEEEEEEESSE----------EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCC---cEEEEeecccCC----------ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 8899997775 444333222211 112389999988753 23479999998876655544
Q ss_pred ecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE--cCCeEEEEECCCCceeeeecccccceee
Q 018293 93 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQA 170 (358)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 170 (358)
+..+ ++ .+ .......++++.+ +++++..- --..|.|-|++.++.+.++.-. + |
T Consensus 85 iP~k--------------~R----~~--~~~~~~~~~ls~d-gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C 139 (342)
T PF06433_consen 85 IPPK--------------PR----AQ--VVPYKNMFALSAD-GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---C 139 (342)
T ss_dssp ETTS---------------B--------BS--GGGEEE-TT-SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---E
T ss_pred cCCc--------------ch----he--ecccccceEEccC-CcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---E
Confidence 4321 00 00 0011223466777 44554442 2357999999999988877632 2 2
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-ee----cCC-eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293 171 VAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV----AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 244 (358)
Q Consensus 171 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~----~~~-i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 244 (358)
.-.-|.++.-|.+-+.||.+.-..+.......... .. ..+ ...-++...++ .++--+.+|.|+--|+.....
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~- 217 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA- 217 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE-
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc-
Confidence 22234444568888999999999887443322111 11 111 11222333223 444466788888888876531
Q ss_pred CCCCCCCccEEEeec----------CCceeEEEecCCCCcEEEEE--eCCC-------cEEEEecCCCCceeeEecCCCC
Q 018293 245 PDSTSQQSSFTLHAH----------DKAVCTISYNPLVPNLLATG--STDK-------MVKLWDLSNNQPSCIASRNPKA 305 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~~l~~~--~~dg-------~i~i~d~~~~~~~~~~~~~~~~ 305 (358)
........- .+.-.-+++++..+++.+.- +.++ .|.++|+.+.+.+....+ .
T Consensus 218 ------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~ 288 (342)
T PF06433_consen 218 ------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---E 288 (342)
T ss_dssp ------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---E
T ss_pred ------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---C
Confidence 111111110 12334567776552333321 1122 277788888874333333 2
Q ss_pred ceeEEEEEcCCCCeEEEE-EccCCeEEEEEccCCCccccc
Q 018293 306 GAVFSVAFSEDSPFVLAI-GGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 306 ~~v~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~ 344 (358)
.++.+|..+.+.+-+|++ ...++.+.+||..+|+.+++.
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 467799999987655654 456899999999999887653
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=7.2e-06 Score=73.24 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=81.5
Q ss_pred ccCCCceEEecCC----CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293 61 DREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 61 ~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 136 (358)
|+|...++|+++. .|.|.||- ++++..... ...-.+++++|+|. .-
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V----------------------------t~P~hatSLCWHpe-~~ 72 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV----------------------------TYPVHATSLCWHPE-EF 72 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc----------------------------ccceehhhhccChH-HH
Confidence 4888889988764 47888874 333322111 11223567999999 77
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++| ..++++..-|.+.+|...
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 89999999999999988776655667799999999999999 899999999999999865
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.53 E-value=1.4e-05 Score=68.82 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=111.6
Q ss_pred eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC---CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293 146 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 222 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (358)
.+.+-|.. +.....+......+..-+|+|++..+....-.. ..+.++|+.+++... .......-..-+|+|++..
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCE
Confidence 34444433 444445554556677789999985544443322 358899998887655 3334555667789999988
Q ss_pred eEEEEecCCeE--EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--EEEEecCCCCceee
Q 018293 223 SFVVSLEDGTI--KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCI 298 (358)
Q Consensus 223 ~~~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~ 298 (358)
++++...||.. +++|+... . ...+....+.-..-.|+|+|..++++.+..|. |.+++........+
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~---------~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGK---------N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred EEEEECCCCCccEEEEcCCCC---------c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 88888888864 55555554 2 22233333334467899999666677766776 55666666653222
Q ss_pred EecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEccCCCc
Q 018293 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG 340 (358)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~~~~~~ 340 (358)
+... +.-..-.|+|||.+++.....+|. |.+.|+.++..
T Consensus 322 -T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 322 -TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred -eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 2222 222267899999986666544455 77777766653
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=3.9e-05 Score=71.38 Aligned_cols=152 Identities=17% Similarity=0.309 Sum_probs=89.6
Q ss_pred EEEecCCCCCcEEEEE-----EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEE---eCCCcEEEEEccc
Q 018293 126 LGLAWNKEFRNILASA-----SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG---SFDRSVVMKDARI 197 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~ 197 (358)
+.|.|-.| +.++|+. .....+++||-+ |.+-..-......=.+++|-|.| ..+++- +.|+.|.++.-+.
T Consensus 199 ~~IsWRgD-g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 199 TSISWRGD-GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred ceEEEccC-CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCC
Confidence 46889988 6677773 222789999976 54333323233444679999988 666664 3466799998665
Q ss_pred CCCccc---eeeecCCeeeEEEcCCCCCeEEE---EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293 198 STHSGF---KWAVAADVESLAWDPHAEHSFVV---SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271 (358)
Q Consensus 198 ~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 271 (358)
.+.... ......++..++|+.++ .++++ ......|++|-+.+..- -....+....... +.|+|.
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhW-------YLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHW-------YLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred ccccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEE-------EEEEEEecccccc--ccccCC
Confidence 433221 12223349999999954 46666 44445599999887531 1122222222221 677775
Q ss_pred CCcEEEEEeCCCcEEEEec
Q 018293 272 VPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 272 ~~~~l~~~~~dg~i~i~d~ 290 (358)
.+..+..-..+|...++|+
T Consensus 346 ~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 346 TEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeEEEEecCCcEEEEEE
Confidence 5455554445666555554
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.52 E-value=3.3e-05 Score=65.97 Aligned_cols=263 Identities=11% Similarity=0.073 Sum_probs=132.0
Q ss_pred cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcc-----------cccccc----cccC-CceeccccccCCCcc
Q 018293 60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID-----------EEKKKK----KSKK-GKKSSIKYKKGSHTD 123 (358)
Q Consensus 60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~-~~~~~~~~~~~~h~~ 123 (358)
.|+++..-|++|...|.|.||.+...+...........+ ...... ..+. .....+...+....+
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g 87 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG 87 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence 347788889999999999999987654432111111100 000000 0111 123445555666689
Q ss_pred cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee--cc------cccceeeEEEcC---CC----CcEEEEEeCCC
Q 018293 124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH---HS----PQILLSGSFDR 188 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~------~~~~v~~~~~~~---~~----~~~l~~~~~dg 188 (358)
+|++++.|.- + ++|.|..+|.+.|.|++....+..- .. ....++++.|.- .+ .-.+++|...|
T Consensus 88 ~vtal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 88 PVTALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp SEEEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred cEeEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 9999999866 4 9999999999999999876655442 11 234678888851 11 14688899999
Q ss_pred cEEEEEccc-C-C-Cccc----eeeecCCeeeEE-EcCCC-------------------CCeEEEEecCCeEEEEEcccC
Q 018293 189 SVVMKDARI-S-T-HSGF----KWAVAADVESLA-WDPHA-------------------EHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 189 ~i~i~d~~~-~-~-~~~~----~~~~~~~i~~~~-~~~~~-------------------~~~~~~~~~dg~i~i~d~~~~ 241 (358)
.+.+|.+.- . . .... ...+.+++..+. ++.+. -.-+++...+..++++...+.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT--
T ss_pred CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC
Confidence 999998752 1 1 1100 112334444443 32211 112444455778999988876
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecC----CCCcEEEEEeCCCcEEEEecCCCCceeeEecCC--CCceeEEEEEcC
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSE 315 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~ 315 (358)
+..............+.+.+ .+...|++-..+|.+++|.+...+.+....... ....+....+++
T Consensus 246 ---------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 246 ---------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp ----------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred ---------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 33333332222233344431 123678888899999999999987544444421 223345677899
Q ss_pred CCCeEEEEEccCCeEEEEEc
Q 018293 316 DSPFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~ 335 (358)
+|+. ++-.+. ..+.++.+
T Consensus 317 ~Gdi-~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 317 NGDI-FYWTGP-SEIQLFSV 334 (395)
T ss_dssp TS-E-EEE-SS-SEEEEEEE
T ss_pred CCCE-EEEeCc-ccEEEEEE
Confidence 9984 444433 23444433
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.9e-05 Score=70.67 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=75.5
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
+.+|..++++++.-+.+ +...+.+|-.... |.. +-+ .|.... +++|+|..-.|+.|-.-|.+.+|.
T Consensus 22 SWHPsePlfAVA~fS~e-r~GSVtIfadtGE--Pqr--~Vt--~P~hat-------SLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPE-RGGSVTIFADTGE--PQR--DVT--YPVHAT-------SLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccCCCCceeEEEEecCC-CCceEEEEecCCC--CCc--ccc--cceehh-------hhccChHHHHHhhccccceeEEEe
Confidence 57899999999965543 3345555543321 111 111 111112 334588888899999999999999
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 153 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 153 (358)
.++.+... ....|..+|..+.||++ +..++++..-|.|.+|...
T Consensus 88 ~~~~e~ht---------------------------v~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHT---------------------------VVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceeee---------------------------eccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 87533221 22359999999999999 5699999999999999875
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=0.00033 Score=54.29 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=69.7
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEEc
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASASA 143 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~ 143 (358)
|++++.|...|.+++.+.+++.........+ .|.+ ....++ +.++..|+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----------------------------~vk~~a~~d~~-~glIycgsh 113 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----------------------------TVKVRAQCDFD-GGLIYCGSH 113 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh----------------------------hhccceEEcCC-CceEEEecC
Confidence 7789999999999999999887665444332 1111 123445 459999999
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 197 (358)
|++....|.++..++...+.......+-+..|-. ..|..+...|.+.--....
T Consensus 114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred CCcEEEecccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccCC
Confidence 9999999999998888876544444444555533 3455555666665544443
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=0.00014 Score=56.21 Aligned_cols=149 Identities=10% Similarity=0.007 Sum_probs=98.9
Q ss_pred cCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC
Q 018293 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 209 (358)
Q Consensus 130 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 209 (358)
..++...+++.|+..+.+.--|.++|+...+-. ....+.+-+.- -| ++++.|+..|.+++.+.+++.........+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 344546789999999999999999998766543 22333332222 23 6799999999999999999977653333332
Q ss_pred CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293 210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289 (358)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d 289 (358)
--......++ ..++.+|+.|++.+..|.++. ..+.+.+...+-..+-++.|-. .-|+.+...|.+.--.
T Consensus 95 vk~~a~~d~~-~glIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 95 VKVRAQCDFD-GGLIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT 163 (354)
T ss_pred hccceEEcCC-CceEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence 2223344554 459999999999999999987 6677766555555556666633 3444445556554444
Q ss_pred cCC
Q 018293 290 LSN 292 (358)
Q Consensus 290 ~~~ 292 (358)
...
T Consensus 164 ~~~ 166 (354)
T KOG4649|consen 164 KNP 166 (354)
T ss_pred cCC
Confidence 443
No 337
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.43 E-value=6.7e-05 Score=60.19 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=105.7
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEE--EcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 221 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (358)
+|+|..||..+|+.+...... ....... ..+++ ..+++++.++.+..||..+++....... ...+...... .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEET-TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ET
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cc
Confidence 689999999999988887531 1122222 22234 5677778999999999988876542222 3332222111 23
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecC---CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHD---KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 297 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 297 (358)
..+++++.++.+..+|..++ +..... .... ...........+ ..++++..++.|..+|+++++..-
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG---------~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTG---------KVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TEEEEEETTSEEEEEETTTS---------CEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE
T ss_pred cccccccceeeeEecccCCc---------ceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEE
Confidence 36777778889999999888 555553 2221 111112222224 678888889999999999998544
Q ss_pred eEecCCCCc--e------eEEEEEcCCCCeEEEEEccCCe-EEEEEccCCCcc
Q 018293 298 IASRNPKAG--A------VFSVAFSEDSPFVLAIGGSKGK-LEIWDTLSDAGI 341 (358)
Q Consensus 298 ~~~~~~~~~--~------v~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~ 341 (358)
......... . +..-....++ .++ .++.+|. +.+ |+.+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~~~~~-d~~tg~~~ 196 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVY-VSSGDGRVVAV-DLATGEKL 196 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEE-EECCTSSEEEE-ETTTTEEE
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEE-EEcCCCeEEEE-ECCCCCEE
Confidence 443322111 1 1222222344 344 4566664 555 99998854
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.42 E-value=0.00053 Score=56.16 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=127.7
Q ss_pred cccCCCcEEEEEEec-----CCCceEEEEEEeccCCCCCceEeeceeecCCcc--cceeeecCCccccCCCceEEecCC-
Q 018293 2 TINPNDAVIVCARNE-----DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP--LCMAWLDCPLKDREKGNFMAVGSM- 73 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~- 73 (358)
.++|+++.+.++..- ...+.--|.+|+..+ +....+..+|..+ .++. .+...+++.||+++++...
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-----L~~~~EI~iP~k~R~~~~~-~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-----LSPTGEIEIPPKPRAQVVP-YKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-----TEEEEEEEETTS-B--BS---GGGEEE-TTSSEEEEEEES
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCc-----CcccceEecCCcchheecc-cccceEEccCCcEEEEEccC
Confidence 578999999886321 111233577788764 3334445555431 1111 1112334566666555432
Q ss_pred -CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293 74 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 152 (358)
Q Consensus 74 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 152 (358)
.-+|.|-|+...+.+..+.+ .+ |.-.-|.+..-+.+-|.||.+.-..+
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~----------------------------PG---C~~iyP~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDT----------------------------PG---CWLIYPSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEG----------------------------TS---EEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCceeeeecC----------------------------CC---EEEEEecCCCceEEEecCCceEEEEE
Confidence 23555666554333222211 11 11122333446888899999999888
Q ss_pred C-CCceeeee----ccccccee-eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eee-----------ecCCeeeE
Q 018293 153 A-AGKCNLTL----EHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWA-----------VAADVESL 214 (358)
Q Consensus 153 ~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~-----------~~~~i~~~ 214 (358)
. .|+...+. ....+++. .-++...+ ..++-.+.+|.|+--|+........ .+. ..+.-.-+
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 7 55543221 11122222 22333444 4455678889998888876542210 110 12334557
Q ss_pred EEcCCCCCeEEEEe--c-----CC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCc
Q 018293 215 AWDPHAEHSFVVSL--E-----DG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKM 284 (358)
Q Consensus 215 ~~~~~~~~~~~~~~--~-----dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~ 284 (358)
++++..+.+++.-. . |+ .|-+||+.+. +.+..+.. ..++.+|..+.+..-+|++.+ .++.
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe
Confidence 77774443333321 1 22 3667777776 66666654 246789999998755776554 5789
Q ss_pred EEEEecCCCCce
Q 018293 285 VKLWDLSNNQPS 296 (358)
Q Consensus 285 i~i~d~~~~~~~ 296 (358)
+.+||..+++..
T Consensus 314 l~v~D~~tGk~~ 325 (342)
T PF06433_consen 314 LDVYDAATGKLV 325 (342)
T ss_dssp EEEEETTT--EE
T ss_pred EEEEeCcCCcEE
Confidence 999999999843
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=0.00013 Score=64.48 Aligned_cols=192 Identities=10% Similarity=0.059 Sum_probs=113.0
Q ss_pred cCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---C-CcEEEEEcccCCCcccee
Q 018293 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---D-RSVVMKDARISTHSGFKW 205 (358)
Q Consensus 130 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~~~~~~~~ 205 (358)
+.|+|..+..+.-..+.+.+.|.++.+...++.-. .....+++++++ .++++.+. . .++...+........ ..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~v-vf 276 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVV-VF 276 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEE-EE
Confidence 45664333344445678889999988877777533 345678999998 56655542 2 223333322111000 00
Q ss_pred eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
.. ..+ -++.+++. +... .++.|.+.|.++..... ......+. -......+.++|||..+++++..+.++
T Consensus 277 ni-~~i--ea~vkdGK-~~~V--~gn~V~VID~~t~~~~~----~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 277 NI-ARI--EEAVKAGK-FKTI--GGSKVPVVDGRKAANAG----SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred ch-HHH--HHhhhCCC-EEEE--CCCEEEEEECCccccCC----cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcE
Confidence 00 000 02233344 3333 36789999998710000 13333333 344568999999995566666679999
Q ss_pred EEEecCCCCc----------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 286 KLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 286 ~i~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.|+|+.+.+. ..+.+..--.+ -...+|.++|. .+.+-..|..|..||+..
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 9999988552 11222222222 34578999997 688889999999999976
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0003 Score=60.53 Aligned_cols=212 Identities=13% Similarity=0.115 Sum_probs=138.5
Q ss_pred cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCc
Q 018293 124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS 201 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~ 201 (358)
.-..++.++.+.+..+....++.|.+.|..+.+......... ....+++++++....++-. .++.+.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345678888866677777777999999988777766665332 5678999999944444444 3688889888887776
Q ss_pred cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 202 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 202 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
.. .........++++|++...+++-..++.|.+.|........ . ......... .....+.+.|++....++...
T Consensus 154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVG-TGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccC-CCCceEEECCCCCEEEEEecc
Confidence 64 33222338999999877666666689999999976542110 0 000012222 234678999999444444443
Q ss_pred C--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 282 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 282 d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
+ +.+...|..++............ ....+..+|+|.++.+.-+..+.+.+-|..+......
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 3 58999998887632221111111 4556899999997666556668899999887665543
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.36 E-value=0.0011 Score=59.16 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=127.7
Q ss_pred ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE-EEecCCCCCcEEEEEE--
Q 018293 66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASAS-- 142 (358)
Q Consensus 66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~-- 142 (358)
..++.++.+|.|+-+|..+++..-........ .....+. ...+.. + +++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~----------------------~~~~~i~ssP~v~~--~-~v~vg~~~ 165 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV----------------------PPGYTMTGAPTIVK--K-LVIIGSSG 165 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc----------------------CcceEecCCCEEEC--C-EEEEeccc
Confidence 67888888999999999887765432211100 0000010 111111 2 344443
Q ss_pred -------cCCeEEEEECCCCceeeeecccccc--------------------e-eeEEEcCCCCcEEEEEeCCC------
Q 018293 143 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------ 188 (358)
Q Consensus 143 -------~dg~v~iwd~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------ 188 (358)
.+|.+..+|.++|+.+..++..... + ....+.+.+ ..++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~ 244 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG 244 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence 4688999999999988776532110 0 122333344 5667776554
Q ss_pred ------------cEEEEEcccCCCccceeeecCCe------eeEEEc----CCC--CCeEEEEecCCeEEEEEcccCCCC
Q 018293 189 ------------SVVMKDARISTHSGFKWAVAADV------ESLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD 244 (358)
Q Consensus 189 ------------~i~i~d~~~~~~~~~~~~~~~~i------~~~~~~----~~~--~~~~~~~~~dg~i~i~d~~~~~~~ 244 (358)
.+.-+|..+++..-......... ....+. -++ ...+++++.+|.+..+|.+++
T Consensus 245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--- 321 (488)
T cd00216 245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--- 321 (488)
T ss_pred CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence 68888888887654221111100 000111 111 125778889999999999998
Q ss_pred CCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE------------------eCCCcEEEEecCCCCceeeEecCCCC-
Q 018293 245 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPKA- 305 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~- 305 (358)
+.+...... ...+..+| + .++.+ ..+|.+.-.|+.+++..-......+.
T Consensus 322 ------~~~W~~~~~---~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 322 ------KLISARPEV---EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ------cEeeEeEee---ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 444443221 11233333 2 22222 23577888888888743222222111
Q ss_pred -----cee--EEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 306 -----GAV--FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 306 -----~~v--~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
.+. ..+.. .+. +++.++.||.|+.+|..+|+.+-+.
T Consensus 390 ~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 390 SWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred ccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence 111 11222 334 4777889999999999999988653
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=8.1e-06 Score=71.34 Aligned_cols=129 Identities=15% Similarity=0.200 Sum_probs=93.5
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+..+++++.|+.-|.+++|+-..+..... ...+..+.+..+..+++ ..++|.|
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------------------~~~~~~~~~~~~~vs~~-e~lvAag 94 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------------------KNEGATGITCVRSVSSV-EYLVAAG 94 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcc--------------------------cccCccceEEEEEecch-hHhhhhh
Confidence 56889999999999999999875443221 11124456667778888 7799999
Q ss_pred EcCCeEEEEECCCCceeee-----e-cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC----CccceeeecCCe
Q 018293 142 SADKQVKIWDVAAGKCNLT-----L-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVAADV 211 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~-----~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i 211 (358)
+..|.|.++-+..+.+... . +.|...|++++|++++ ..+++|...|.|.+-.+.... .........+.|
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 9999999998876432211 1 2478899999999999 889999999999998887621 112233456677
Q ss_pred eeEEEcC
Q 018293 212 ESLAWDP 218 (358)
Q Consensus 212 ~~~~~~~ 218 (358)
..+....
T Consensus 174 VQlD~~q 180 (726)
T KOG3621|consen 174 VQLDYLQ 180 (726)
T ss_pred EEeeccc
Confidence 7777654
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.31 E-value=0.00081 Score=58.45 Aligned_cols=215 Identities=18% Similarity=0.215 Sum_probs=106.6
Q ss_pred CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293 1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 80 (358)
Q Consensus 1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 80 (358)
|+++|+|+.+++. .++ +..+|..... .. ..........| .+.++ +|+-...+.|.|+
T Consensus 38 ls~npngr~v~V~-g~g-----eY~iyt~~~~-----r~----k~~G~g~~~vw-------~~~n~-yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDG-----EYEIYTALAW-----RN----KAFGSGLSFVW-------SSRNR-YAVLESSSTIKIY 94 (443)
T ss_dssp EEE-TTSSEEEEE-ETT-----EEEEEETTTT-----EE----EEEEE-SEEEE--------TSSE-EEEE-TTS-EEEE
T ss_pred EEECCCCCEEEEE-cCC-----EEEEEEccCC-----cc----cccCceeEEEE-------ecCcc-EEEEECCCeEEEE
Confidence 4689999999994 555 6666664331 00 01122224445 55444 6666668889996
Q ss_pred EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293 81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 160 (358)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 160 (358)
.--........ . -...+..|-. +.+|+..+. +.|.+||+++++.+++
T Consensus 95 kn~~~~~~k~i-------------------------~---~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~ 141 (443)
T PF04053_consen 95 KNFKNEVVKSI-------------------------K---LPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRR 141 (443)
T ss_dssp ETTEE-TT---------------------------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEE
T ss_pred EcCccccceEE-------------------------c---CCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeE
Confidence 32221111100 0 1112333322 345555544 4899999999999999
Q ss_pred ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-----------CCccceeeecCCeeeEEEcCCCCCeEEEEec
Q 018293 161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-----------THSGFKWAVAADVESLAWDPHAEHSFVVSLE 229 (358)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 229 (358)
+... +|..+.|++++ .+++..+.+ .+.+++.... ............|.+..|..+ .++-.+.
T Consensus 142 i~v~--~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~ 214 (443)
T PF04053_consen 142 IDVS--AVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTS 214 (443)
T ss_dssp ESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-T
T ss_pred EecC--CCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcC
Confidence 9743 48999999998 677766644 6677665433 011222233678999999863 4554444
Q ss_pred CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
. .++. +..+ ....+..-..++.=+...|.. +.++....|+.+..+.+..
T Consensus 215 ~-~lkY--l~~G----------e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 215 N-HLKY--LVNG----------ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp T-EEEE--EETT----------EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--H
T ss_pred C-eEEE--EEcC----------CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECH
Confidence 4 6665 4433 222333335566667777755 6777777888888776643
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.28 E-value=0.0002 Score=65.75 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=96.4
Q ss_pred CcEEEEE-EcCCeEEEEECCCCceeeeecccccc-eeeEEEcCCC------CcEEEEEeCCCcEEEEEcccCCCcc----
Q 018293 135 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHS------PQILLSGSFDRSVVMKDARISTHSG---- 202 (358)
Q Consensus 135 ~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~---- 202 (358)
.++|+.- .....|.-.|++.|+.+..+..+... |..+ .|+. +...+.|-.+..+..||.|......
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 4444443 34578999999999999999877654 4444 3421 1345677788999999999654211
Q ss_pred -ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 203 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 203 -~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
.........+|++-..+ ..+|+|+.+|.|++||--.. .....+.+-..+|..|..+.|| ++|++.+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g~---------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc- 637 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLGK---------RAKTALPGLGDPIIGIDVTADG-KWILATC- 637 (794)
T ss_pred ccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccch---------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-
Confidence 11223445777777653 48999999999999994321 3344556667899999999999 6666555
Q ss_pred CCcEEEEec
Q 018293 282 DKMVKLWDL 290 (358)
Q Consensus 282 dg~i~i~d~ 290 (358)
+..+.+++.
T Consensus 638 ~tyLlLi~t 646 (794)
T PF08553_consen 638 KTYLLLIDT 646 (794)
T ss_pred cceEEEEEE
Confidence 456777775
No 345
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.24 E-value=0.0023 Score=54.76 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=57.8
Q ss_pred EEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce----eEEEEEc--------------C
Q 018293 254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA----VFSVAFS--------------E 315 (358)
Q Consensus 254 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----v~~~~~~--------------~ 315 (358)
..+......+.+++.+|.+ .+.++...=|.|.++|+..+... ...++.... +....-. .
T Consensus 301 ~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv--rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV--RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh--hhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 3444455678999999997 78888777799999999887632 222222111 1110000 0
Q ss_pred CCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293 316 DSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 346 (358)
...++++-+-.-|.|.||.+++|..+..+..
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1234555567789999999999998875443
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.24 E-value=0.0007 Score=58.81 Aligned_cols=225 Identities=15% Similarity=0.168 Sum_probs=110.8
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
++.++|+|+++++++ ||...||.....+. ...+.-....|.+. + .
T Consensus 37 ~ls~npngr~v~V~g-~geY~iyt~~~~r~--------------------------------k~~G~g~~~vw~~~-n-~ 81 (443)
T PF04053_consen 37 SLSHNPNGRFVLVCG-DGEYEIYTALAWRN--------------------------------KAFGSGLSFVWSSR-N-R 81 (443)
T ss_dssp EEEE-TTSSEEEEEE-TTEEEEEETTTTEE--------------------------------EEEEE-SEEEE-TS-S-E
T ss_pred eEEECCCCCEEEEEc-CCEEEEEEccCCcc--------------------------------cccCceeEEEEecC-c-c
Confidence 445599999999955 78888888432111 12344556788885 3 5
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 217 (358)
+|+-..+++|.++.--+.+....++. ...+..+-. | .+|...+.+ .|.+||+.+.+.+.... . .+|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~-v-~~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRID-V-SAVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEES-S--E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEe-c-CCCcEEEEE
Confidence 77777788999974222333233432 122333332 5 666666544 89999999887655222 2 238999999
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCC--CCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAK--SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
+++. +++..+.+ .+.+++..... .............+..-...|.+.+|..+ -+++|.. . .++- +..++.
T Consensus 154 ~~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~ 225 (443)
T PF04053_consen 154 DDGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGET 225 (443)
T ss_dssp TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEE
T ss_pred CCCC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCc
Confidence 9654 66666544 56666654320 00000000133334333677899999864 3444433 3 6665 555553
Q ss_pred eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
..+..+ ..++.=+...+... .+.....|+.+..+.+..
T Consensus 226 ~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 226 GIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred ceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence 333333 34566677777555 466778888888887754
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.22 E-value=6.3e-05 Score=68.89 Aligned_cols=144 Identities=16% Similarity=0.223 Sum_probs=98.1
Q ss_pred cEEEEE-eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293 179 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 251 (358)
Q Consensus 179 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (358)
.+|+.. .....|+-.|++.++.+. .+.....+.-..+.|+ .+...++|-.++.+..||.|-... +
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~-eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------k 565 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVE-EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------K 565 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEE-EeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-------c
Confidence 444433 345788889999888776 3443333334444442 123567788889999999996521 1
Q ss_pred ccE---EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293 252 SSF---TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328 (358)
Q Consensus 252 ~~~---~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 328 (358)
.+. .........+|++-+.+| +||+|+.+|.||+||--..+ ....+.+-..+|..|..+.||+++|||+ +.
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~t 639 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KT 639 (794)
T ss_pred eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cc
Confidence 111 011234567888877765 89999999999999954322 4555667788999999999999988776 46
Q ss_pred eEEEEEcc
Q 018293 329 KLEIWDTL 336 (358)
Q Consensus 329 ~i~vw~~~ 336 (358)
.|.+++..
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 88888874
No 348
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00028 Score=60.21 Aligned_cols=144 Identities=18% Similarity=0.250 Sum_probs=100.6
Q ss_pred cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC------CeEEEEecCCeEEEEEcccCCCCCCCCCCCc
Q 018293 179 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS 252 (358)
Q Consensus 179 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 252 (358)
-++.++.....++-.|++.++.+. .+.....|+.+.+.|+.. ..-++|-.+..|.-||.|-... ..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~k 418 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NK 418 (644)
T ss_pred eEeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------ce
Confidence 345556666778888998888776 566666688888887532 1235577889999999995422 12
Q ss_pred cEEEeec----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293 253 SFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328 (358)
Q Consensus 253 ~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 328 (358)
+.....| .....|.+-..+| ++++|+.+|.|++||.-..+ ....+++...+|..+..+.+|.++|+|+ +.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t 492 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KT 492 (644)
T ss_pred eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence 2222233 2345666666554 89999999999999984333 4556778888999999999999877655 56
Q ss_pred eEEEEEcc
Q 018293 329 KLEIWDTL 336 (358)
Q Consensus 329 ~i~vw~~~ 336 (358)
.+.+-++.
T Consensus 493 yLlLi~t~ 500 (644)
T KOG2395|consen 493 YLLLIDTL 500 (644)
T ss_pred EEEEEEEe
Confidence 77777764
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.19 E-value=0.0036 Score=54.86 Aligned_cols=248 Identities=13% Similarity=0.160 Sum_probs=125.7
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-------
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME------- 74 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------- 74 (358)
.++|+++.++.+-..+......+++++...+ ..... ..... ....+.| .++++.|+....+
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d-~i~~~-~~~~~~W-------~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPD-GIENP-KFSSVSW-------SDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEE-EEEEE-ESEEEEE-------CTTSSEEEEEECSTTTSS-C
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCC-ccccc-ccceEEE-------eCCCCEEEEEEeCccccccc
Confidence 5899999999997776556678999999876 22211 11111 1112556 6787766544322
Q ss_pred ----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC---eE
Q 018293 75 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---QV 147 (358)
Q Consensus 75 ----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v 147 (358)
..|+.|++.+....... +.....+......+..++++..+++...... .+
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~l-----------------------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDEL-----------------------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EE-----------------------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred CCCCcEEEEEECCCChHhCee-----------------------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 23677777543322111 1111112222567888999554444444333 47
Q ss_pred EEEECCCC----ceeeeecccccce-eeEEEcCCCCcEEEEEeC---CCcEEEEEcccCCCcc---ceeeecC--CeeeE
Q 018293 148 KIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGSF---DRSVVMKDARISTHSG---FKWAVAA--DVESL 214 (358)
Q Consensus 148 ~iwd~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~---~~~~~~~--~i~~~ 214 (358)
.+.++..+ .....+......+ ..+... .+ .+++.... .+.|...++....... ....+.. .+..+
T Consensus 255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~ 332 (414)
T PF02897_consen 255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV 332 (414)
T ss_dssp EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence 78888764 2233333233333 333333 33 44444432 4567777777665311 2333333 34445
Q ss_pred EEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEe-ecCCceeEEEecCCCCcEEEEEeC---CCcEEEE
Q 018293 215 AWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPNLLATGST---DKMVKLW 288 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~ 288 (358)
... ++.+++....++ .|+++++..+ .....+. .-.+.|..+...+++..+.++.+. -+++..|
T Consensus 333 ~~~--~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 401 (414)
T PF02897_consen 333 SLF--KDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRY 401 (414)
T ss_dssp EEE--TTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred EEE--CCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 443 444666666665 5788888722 2222222 223446666666666455554433 2458888
Q ss_pred ecCCCCcee
Q 018293 289 DLSNNQPSC 297 (358)
Q Consensus 289 d~~~~~~~~ 297 (358)
|+.+++...
T Consensus 402 d~~t~~~~~ 410 (414)
T PF02897_consen 402 DLATGELTL 410 (414)
T ss_dssp ETTTTCEEE
T ss_pred ECCCCCEEE
Confidence 988887433
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.18 E-value=0.00016 Score=48.58 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=68.3
Q ss_pred EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 207 (358)
Q Consensus 128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 207 (358)
+.|..+|.+.|++|+.|..|++|+- .+.+.++.. .+.|+++.-... ..|+.+..+|+|-+|+-.... .....
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~Rl---WRiKS 79 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQRL---WRIKS 79 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCccee---eeecc
Confidence 3455666789999999999999973 366777764 466777777665 468999999999999763221 11123
Q ss_pred cCCeeeEEEc---CCCCCeEEEEecCCeEE
Q 018293 208 AADVESLAWD---PHAEHSFVVSLEDGTIK 234 (358)
Q Consensus 208 ~~~i~~~~~~---~~~~~~~~~~~~dg~i~ 234 (358)
...+.++.+. .++...+++|-.+|.|-
T Consensus 80 K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3345555543 33445799998898874
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.17 E-value=0.0025 Score=54.37 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=105.8
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-c-------c---------ccceeeEEEcCCCCcEEEEE
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-H-------H---------TDKVQAVAWNHHSPQILLSG 184 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~-------~---------~~~v~~~~~~~~~~~~l~~~ 184 (358)
...+....|+|+ ++.++-. .++.|.+++..+++..+... + - -+.-..+.|+|++ +.|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEE
T ss_pred ccccccceeecC-CCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEE
Confidence 467888999999 5566655 46889999987775433221 1 0 1123578899999 555544
Q ss_pred e-CCCcE-----------------------------------EEEEcccCCCcccee-----eecCCeeeEEEcCCCCCe
Q 018293 185 S-FDRSV-----------------------------------VMKDARISTHSGFKW-----AVAADVESLAWDPHAEHS 223 (358)
Q Consensus 185 ~-~dg~i-----------------------------------~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~ 223 (358)
. .+..+ .++|+.+++...... .....+..+.|.+++..+
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 3 33322 233443333221111 112346778888865423
Q ss_pred EEE-EecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCce---eEEEec-CCCCcEEEEEeCCCcEE--EEecCCC
Q 018293 224 FVV-SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKMVK--LWDLSNN 293 (358)
Q Consensus 224 ~~~-~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~-~~~~~~l~~~~~dg~i~--i~d~~~~ 293 (358)
++. ...+. .+.++|..++.. +.+. .......| ....+. +++..++.....||.-+ +++...+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred EEEEcccCCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 333 22222 355666665421 1111 22222222 345554 77767777777888744 4555555
Q ss_pred CceeeEecCCCCceeEE-EEEcCCCCeEEEEEccCC----eEEEEEcc
Q 018293 294 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG----KLEIWDTL 336 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg----~i~vw~~~ 336 (358)
. ...+....-.|.. +.++++++.++.++..++ .|+.-++.
T Consensus 271 ~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 271 K---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp E---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred c---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 4 3344444555644 788898887777777633 45555555
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.0004 Score=61.59 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=114.2
Q ss_pred CccccCCCceEEe-cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293 58 PLKDREKGNFMAV-GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 136 (358)
Q Consensus 58 ~~~~s~~~~~l~~-g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 136 (358)
.+-++|||+.+.. .-..+.+.+.|.++.+......+ .+....++++|++ .
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V----------------------------dgnpd~v~~spdG-k 247 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV----------------------------DGNLDNVDTDYDG-K 247 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEe----------------------------CCCcccceECCCC-C
Confidence 3445778876643 33457788888775443332221 1233556788884 4
Q ss_pred EEEEEEcC----CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc----CCCccceeeec
Q 018293 137 ILASASAD----KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI----STHSGFKWAVA 208 (358)
Q Consensus 137 ~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~ 208 (358)
++++.+.+ +++..-+..+...+..+.- ..+ -++.++| ++... .++.|.+.|.++ ...........
T Consensus 248 ~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~i--ea~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG 320 (635)
T PRK02888 248 YAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARI--EEAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP 320 (635)
T ss_pred EEEEeccCcccCcceeeeccccCceEEEEch--HHH--HHhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECC
Confidence 66555432 2233322222211111110 000 0234566 44443 367899999987 33344455677
Q ss_pred CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC--C-CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--S-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
.....+.++|++...++++..++++.++|+.+.+.... . .............++ ...+|.++| +...+-.-|..|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G-~aytslf~dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRG-NAYTTLFLDSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCC-CEEEeEeeccee
Confidence 78899999998887777788899999999988632100 0 000112222222333 567889887 777788889999
Q ss_pred EEEecCC
Q 018293 286 KLWDLSN 292 (358)
Q Consensus 286 ~i~d~~~ 292 (358)
..|++..
T Consensus 399 ~kwn~~~ 405 (635)
T PRK02888 399 VKWNIEA 405 (635)
T ss_pred EEEehHH
Confidence 9999876
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.0046 Score=53.71 Aligned_cols=174 Identities=10% Similarity=0.125 Sum_probs=89.4
Q ss_pred ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee-------cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293 123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 195 (358)
+.|-++.|+.+ . .|+.-..||.+++||+. |+....+ .-....+....+...| ++.-..++.+.+.+-
T Consensus 81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC-C-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeC
Confidence 78999999886 4 56677899999999986 3331111 1111222222333344 333344555544432
Q ss_pred ccCC-CccceeeecCC---------eee-EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293 196 RIST-HSGFKWAVAAD---------VES-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264 (358)
Q Consensus 196 ~~~~-~~~~~~~~~~~---------i~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (358)
.... ........... ... ..++.+. ...+....++.+.+.+-... ..+. ..+++.
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~------------~~i~-~~~~i~ 220 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF------------KQID-SDGPII 220 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc------------cccc-CCCCeE
Confidence 2211 10100010000 000 1233322 23333334455554333221 0111 246899
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 318 (358)
Q Consensus 265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 318 (358)
.+++||++ ++++.-..+|.+.+.+..-.+..+..... .......|.|..+..
T Consensus 221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence 99999998 88998899999999887655533333322 234556777776553
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.003 Score=53.22 Aligned_cols=229 Identities=10% Similarity=0.070 Sum_probs=121.1
Q ss_pred EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccC----CCceEEecCC----------CCeEEEEEcccc-cC
Q 018293 23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE----KGNFMAVGSM----------EPAIEIWDLDVI-DE 87 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~l~~g~~----------dg~i~vw~~~~~-~~ 87 (358)
.+.+++.... .....+.......+.++.-+.+ .. ...++++|+. .|.|.++++... ..
T Consensus 3 ~i~l~d~~~~---~~~~~~~l~~~E~~~s~~~~~l----~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 3 SIRLVDPTTF---EVLDSFELEPNEHVTSLCSVKL----KGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp EEEEEETTTS---SEEEEEEEETTEEEEEEEEEEE----TTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred EEEEEeCCCC---eEEEEEECCCCceEEEEEEEEE----cCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 4555665543 2333333333444445544332 22 2567887753 288999999753 00
Q ss_pred cCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeeecc-cc
Q 018293 88 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLEH-HT 165 (358)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~ 165 (358)
. .+.+.... ....++|++++--. + .|+++ .++.|.+|++...+ ....-.. ..
T Consensus 76 ~---------------------~~l~~i~~-~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 76 N---------------------FKLKLIHS-TEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp -----------------------EEEEEEE-EEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BS
T ss_pred c---------------------eEEEEEEE-EeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCcccchhhheecce
Confidence 0 11111111 13467899988663 3 34443 35889999998777 3332221 22
Q ss_pred cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
..+.++... + ++++.|.....+.++..+.... ...... ....++++.+-+++ ..++++..+|.+.++......
T Consensus 130 ~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~ 205 (321)
T PF03178_consen 130 FYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEI 205 (321)
T ss_dssp SSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-
T ss_pred EEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCC
Confidence 355555554 4 5899999888888886554222 221222 23457888888655 489999999999999987432
Q ss_pred CCCCCCCCCccEEEee-cCCceeEE---EecC--CCC-----cEEEEEeCCCcEEEE
Q 018293 243 SDPDSTSQQSSFTLHA-HDKAVCTI---SYNP--LVP-----NLLATGSTDKMVKLW 288 (358)
Q Consensus 243 ~~~~~~~~~~~~~~~~-~~~~i~~i---~~~~--~~~-----~~l~~~~~dg~i~i~ 288 (358)
...............- ....|+++ .+.| .+. ..++.++.+|.|.+.
T Consensus 206 ~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 206 PNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 2111110011111122 24557777 5555 221 247778889998843
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2e-05 Score=68.13 Aligned_cols=94 Identities=16% Similarity=0.320 Sum_probs=80.0
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccccccee-eEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
...|.-+.|+|. ..++|.+..+|.|.+..+. .+.+.++.-+...++ +++|.||| +.++.|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence 456888999999 7799999999999999988 777888887777777 99999998 9999999999999999998876
Q ss_pred ccc-eeeecCCeeeEEEcC
Q 018293 201 SGF-KWAVAADVESLAWDP 218 (358)
Q Consensus 201 ~~~-~~~~~~~i~~~~~~~ 218 (358)
... ......+|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 542 244567788888875
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0027 Score=54.67 Aligned_cols=208 Identities=18% Similarity=0.168 Sum_probs=132.3
Q ss_pred cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293 124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 203 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 203 (358)
....+...+++.+..++-.....+...+...................+..++.+.+.++....++.|.+.|....+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~- 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG- 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence 4456667777544444444444566655552222221221113446788888886677777778999999976655544
Q ss_pred eeeecCCeeeEEEcCCCCCeEEEEe--cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293 204 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
..........++++|+++...++-. .++.+.+.|..+. ...........+ ..+++.|++...+++-..
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence 2333347788999997776666555 3688888888876 444444433344 889999999545556667
Q ss_pred CCcEEEEecCCCCceeeEe---cCCCCceeEEEEEcCCCCeEEEEEccC--CeEEEEEccCCCcccc
Q 018293 282 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN 343 (358)
Q Consensus 282 dg~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~~~ 343 (358)
++.|.+.|........ .. ...-...-..+.++|+|.++.++...+ +.+...|..++.....
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 8999999977765221 11 011122345689999999766666555 6899999888776554
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.06 E-value=0.002 Score=54.32 Aligned_cols=176 Identities=13% Similarity=0.157 Sum_probs=108.0
Q ss_pred CeEEEEECCCCceeeeeccc-ccceeeE---EEcCC---CCcEEEEEeC----------CCcEEEEEcccC----CCcc-
Q 018293 145 KQVKIWDVAAGKCNLTLEHH-TDKVQAV---AWNHH---SPQILLSGSF----------DRSVVMKDARIS----THSG- 202 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~-~~~v~~~---~~~~~---~~~~l~~~~~----------dg~i~i~d~~~~----~~~~- 202 (358)
..|++.|..+.+.+..+.-. ...+.++ .+..+ ...++++|+. .|.|.++++... ....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888998888776655422 2334443 44432 1367777753 289999999884 1111
Q ss_pred -ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEE
Q 018293 203 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 203 -~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~ 279 (358)
......++|++++-.. + .++++ .++.|.+|++... ..+.....+ ...+.++... + +++++|
T Consensus 82 i~~~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~---------~~l~~~~~~~~~~~i~sl~~~--~-~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNS---------KTLLKKAFYDSPFYITSLSVF--K-NYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETT---------SSEEEEEEE-BSSSEEEEEEE--T-TEEEEE
T ss_pred EEEEeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCc---------ccchhhheecceEEEEEEecc--c-cEEEEE
Confidence 2334578888888663 3 34444 4589999999987 312222222 3356666665 3 689999
Q ss_pred eCCCcEEEEecCCCC-ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 280 STDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.....+.++..+... .............++++.|.+++. .++.+..+|.+.++....
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 988888887554422 122223333456789999987776 578899999999998863
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.0037 Score=54.28 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=93.7
Q ss_pred eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee---ecCCe-----eeEEEc
Q 018293 146 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD 217 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i-----~~~~~~ 217 (358)
.|++|+. .|+++..+.-..+.+.++.|..+. .|++...||.++++|+.... ..... ....| ....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence 5999984 567777765445889999998864 57777899999999986443 11111 11122 122222
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCC-CCC-CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
. ++ ++.-+.++.+.+..-...... ... ...........+........++.+. ...+....++.+.+.+-...+.
T Consensus 137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc
Confidence 1 22 333344555544322221100 000 0000000011111110012233333 3444444455566444332211
Q ss_pred eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
.. ..+++..|+.||+|++ +|.-..+|.+.+....-.+.+.
T Consensus 213 -----i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 213 -----ID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred -----cc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcccceeE
Confidence 11 2468999999999995 7888888999888765444443
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0006 Score=54.17 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=96.8
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 238 (358)
.+.+-...+..++|.|+.+.++++....+.|..++.. ++.+... ....+....+++.. ++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 3445556699999999876788888888888888864 3433322 22245688888875 3434444445899999999
Q ss_pred ccCCCCCCCCCCCccEEE-----eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC---CCceeeEe------cCCC
Q 018293 239 RTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN---NQPSCIAS------RNPK 304 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~------~~~~ 304 (358)
........ ......+ ..+...+-.++|.|.+ +.|+.+-+..-..+|.+.. ........ ....
T Consensus 94 ~~~~~~~~---~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 94 DDDTTSLD---RADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp ----TT-----EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred eccccccc---hhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 55421100 0111111 1244568999999987 4555556666677777654 11111111 1223
Q ss_pred CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
...+.+++++|....+++.+..+..|..+| .+|+.+.
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~ 206 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS 206 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE
Confidence 345889999998777888888999999999 5556444
No 360
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.96 E-value=0.0078 Score=50.52 Aligned_cols=281 Identities=16% Similarity=0.138 Sum_probs=129.2
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 81 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 81 (358)
.|.++|+.|+.++..+ +.-++|..+...+....+-.... -..+-.+ .+++++.++-......|+--|
T Consensus 42 ~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g--~~~~g~~---------~s~~~~~~~Yv~~~~~l~~vd 108 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG--DNTFGGF---------LSPDDRALYYVKNGRSLRRVD 108 (386)
T ss_dssp -B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS---B-TTT-E---------E-TTSSEEEEEETTTEEEEEE
T ss_pred CcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC--CCccceE---------EecCCCeEEEEECCCeEEEEE
Confidence 3678898888876644 67788999988762222222111 1111111 156777765443445677777
Q ss_pred cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec--CCCCCcEEEEEEc----------------
Q 018293 82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW--NKEFRNILASASA---------------- 143 (358)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~---------------- 143 (358)
+.+.+...-.. -....+-...| +.+ ..+++-.-.
T Consensus 109 L~T~e~~~vy~---------------------------~p~~~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 109 LDTLEERVVYE---------------------------VPDDWKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp TTT--EEEEEE-----------------------------TTEEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHHHHH
T ss_pred CCcCcEEEEEE---------------------------CCcccccccceeeCCC-ccEEEEEEEeehhccCccccHHHHH
Confidence 77643221111 11222222333 222 333322111
Q ss_pred ------CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---CC-cEEEEEcccCCCcc-ceeee--cCC
Q 018293 144 ------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DR-SVVMKDARISTHSG-FKWAV--AAD 210 (358)
Q Consensus 144 ------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg-~i~i~d~~~~~~~~-~~~~~--~~~ 210 (358)
...|.--|+.+|+....+. ....+..+.|+|..+.+++-|-+ +. .-++|-+++..... ....+ ...
T Consensus 161 ~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~ 239 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES 239 (386)
T ss_dssp HHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred HHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence 1235556777776544444 45677889999988676666543 22 23667666433211 11111 223
Q ss_pred eeeEEEcCCCCCeEEEEec----CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---
Q 018293 211 VESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--- 283 (358)
Q Consensus 211 i~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--- 283 (358)
+.-=-|.|++..+...+.. +..|.-+|+.+. .... +. ......-+..++++ .+++-=+.|.
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~---------~~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~ 307 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG---------ERRR-LM-EMPWCSHFMSSPDG-KLFVGDGGDAPVD 307 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCC---------CceE-EE-eCCceeeeEEcCCC-CEEEecCCCCCcc
Confidence 4444688888766665432 335666777765 2211 11 11234456667777 6655433321
Q ss_pred -------------cEEEEecCCCCceeeEec-------CCCCc-eeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 284 -------------MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 284 -------------~i~i~d~~~~~~~~~~~~-------~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
-|+++++..++...+... .++.. .=....|+|||+++|.++...|...||-+.
T Consensus 308 v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 308 VADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 466778776653322221 11111 123578999999999999999988888654
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=2e-05 Score=59.71 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=83.2
Q ss_pred EEEEEeCCCcEEEEEcccCCCccceee-ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee
Q 018293 180 ILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 258 (358)
Q Consensus 180 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 258 (358)
.+...+.||.|.-++++..+....... +.....-+. ....+++|+.+|.|.+|...... ........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s 99 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT----ASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS 99 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc----cCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence 455566788888888775443221111 111111122 34479999999999999887321 11111112
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC-ceeEEEEEcCCCCeEEEEE--ccCCeEEEEEc
Q 018293 259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDT 335 (358)
Q Consensus 259 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~vw~~ 335 (358)
-...|.++.-.-+...+..+++.||.|+.|++.-.+. +-....|. .++.....+..++ .++.+ |.|..++.|++
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcch
Confidence 2233333332222225899999999999999988773 33344454 4555555555566 36666 77777888877
Q ss_pred cC
Q 018293 336 LS 337 (358)
Q Consensus 336 ~~ 337 (358)
..
T Consensus 177 e~ 178 (238)
T KOG2444|consen 177 EK 178 (238)
T ss_pred hh
Confidence 54
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.90 E-value=0.003 Score=57.17 Aligned_cols=192 Identities=17% Similarity=0.236 Sum_probs=101.3
Q ss_pred EEEecCCCCCcEEEEEEcC------CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCCc-----EEE
Q 018293 126 LGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VVM 192 (358)
Q Consensus 126 ~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i 192 (358)
.+++... +.+.++|+.| .++..||..+.+-.. .+........ ++. -+| .+.++|+.||. +-.
T Consensus 326 ~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~-l~g-~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 326 VGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAV-LDG-KLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred ccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eEE-ECC-EEEEEeccccccccccEEE
Confidence 3444443 4688889888 357788887765332 2221111111 111 133 78888988875 666
Q ss_pred EEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEecCC------eEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293 193 KDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264 (358)
Q Consensus 193 ~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (358)
||..+.+-... ..........+.+ ++.+.++|+.++ .+..||..+..- .....+..-....
T Consensus 401 YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------~~~~~M~~~R~~~- 469 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTW-------TLIAPMNTRRSGF- 469 (571)
T ss_pred ecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCce-------eecCCcccccccc-
Confidence 77766543221 1111122222222 456777777554 567888877632 1111121111111
Q ss_pred EEEecCCCCcEEEEEeCCCc-----EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-----eEEEEE
Q 018293 265 TISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWD 334 (358)
Q Consensus 265 ~i~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vw~ 334 (358)
.++... + .+.+.|+.|+. |..||..+.+...+.........+....+ ++. +++.|+.|| +|..||
T Consensus 470 g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 470 GVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred eEEEEC-C-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcC
Confidence 233332 3 67788887763 78899998886555333333222222222 333 788899887 466776
Q ss_pred ccCC
Q 018293 335 TLSD 338 (358)
Q Consensus 335 ~~~~ 338 (358)
..+.
T Consensus 545 p~~d 548 (571)
T KOG4441|consen 545 PETD 548 (571)
T ss_pred CCCC
Confidence 6553
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.85 E-value=0.0027 Score=42.82 Aligned_cols=98 Identities=23% Similarity=0.259 Sum_probs=66.4
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
|..++.+.|++|+.|..|++|+-. ..+..+.. ...|++++-... ..++.+..+|+|-+|+.....
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~-----------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD-----------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC-----------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCccee-
Confidence 445567899999999999999875 44555544 456777777664 578899999999999874432
Q ss_pred eeeEecCCCCceeEEEEEcC---CCCeEEEEEccCCeEEE
Q 018293 296 SCIASRNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEI 332 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~v 332 (358)
...... ..+.++.+.. ||..-|++|-.+|.|-+
T Consensus 75 ---WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 ---WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 222222 2355554433 44444888888888753
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.00051 Score=58.84 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=86.1
Q ss_pred ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293 167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 246 (358)
Q Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 246 (358)
.|+.+.|.++. ..|+++...|.|.+|.....+... .....+-....+.+- ...++.-.+-|+........
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-------SLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-------cccCCCcceEEehhhCCccc
Confidence 47889999987 789999999999999877654322 000011111111110 11122233445544321111
Q ss_pred CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC------CCceeEEEEEcC-----
Q 018293 247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP------KAGAVFSVAFSE----- 315 (358)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~----- 315 (358)
.....+..-+....++|++++.+.-| +++.|..+|.+.|.|+|....+....+.. ....++++.|.-
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 11124445556668999999998655 99999999999999998876544433333 234577887762
Q ss_pred CC--CeEEEEEccCCeEEEEEcc
Q 018293 316 DS--PFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 316 ~~--~~~l~~~~~dg~i~vw~~~ 336 (358)
|+ .-++.+|...|.+.+|.+.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEe
Confidence 22 1257788999999999885
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00015 Score=62.94 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=75.8
Q ss_pred ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee-EEEecCCCCcEEEEEeCCCcE
Q 018293 207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~dg~i 285 (358)
....+..+.|+| .-.++|.++.+|.|.++.+. . +.+..+..+...++ +++|.||| ++|+.|-.||+|
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~---------qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I 86 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-W---------QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTI 86 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEec-c---------ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeE
Confidence 345678899999 56699999999999999887 3 67778877777777 99999998 999999999999
Q ss_pred EEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293 286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315 (358)
Q Consensus 286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 315 (358)
++.|+.++....-. .-.....|.++.|.+
T Consensus 87 ~L~Dve~~~~l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceecc-ccccccchheeeccc
Confidence 99999998743221 122345678888864
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.80 E-value=0.013 Score=48.10 Aligned_cols=238 Identities=18% Similarity=0.149 Sum_probs=125.7
Q ss_pred CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293 63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 142 (358)
Q Consensus 63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 142 (358)
..++.|+.|+.+| +.+++......... . .+...|..+...|+ -+.+++-+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~--------------------------i--~~~~~I~ql~vl~~-~~~llvLs 54 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR--------------------------I--LKLSSITQLSVLPE-LNLLLVLS 54 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee--------------------------E--eecceEEEEEEecc-cCEEEEEc
Confidence 4688999999999 88998821111110 0 12334999999988 44554443
Q ss_pred cCCeEEEEECCCCceeeee--------------cccccceeeEE--EcCCCCcEEEEEeCCCcEEEEEcccCC----Ccc
Q 018293 143 ADKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSG 202 (358)
Q Consensus 143 ~dg~v~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~ 202 (358)
|+.+.++++..-...... ......+...+ -...+...++ ......|.+|...... ...
T Consensus 55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccccee
Confidence 599999998755433311 01122333333 1233323444 4445589998887642 122
Q ss_pred ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc---EEEeecCCceeEEEecCCCCcEEEEE
Q 018293 203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
........+..++|.+ +.++.|..++ ..+.|+.++....-....... ........++..+.... + .+|++.
T Consensus 133 ke~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~ 206 (275)
T PF00780_consen 133 KEISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY 206 (275)
T ss_pred EEEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe
Confidence 3445678899999984 3677776554 778898865331100000000 00011122344444443 3 555543
Q ss_pred eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293 280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 346 (358)
|..-.+.|.. +++.....+.-. ....++++. .+|+++ .+ ++.|.||++.+++.++....
T Consensus 207 --~~~g~fv~~~-G~~~r~~~i~W~-~~p~~~~~~--~pyli~-~~-~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 207 --DNIGVFVNKN-GEPSRKSTIQWS-SAPQSVAYS--SPYLIA-FS-SNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred --cceEEEEcCC-CCcCcccEEEcC-CchhEEEEE--CCEEEE-EC-CCEEEEEECcCCcEEEEEEC
Confidence 3333344443 332221122211 234455553 345554 33 35699999999988765543
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.77 E-value=0.0086 Score=53.56 Aligned_cols=191 Identities=15% Similarity=0.199 Sum_probs=109.5
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeeccccc------ce--eeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KV--QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 208 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v--~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 208 (358)
.++.++.++.|.-.|.++++.+..+..... .+ ..+... ++ ..++.++.++.|..+|.++++..-......
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 567778889999999999988877653322 00 011111 21 467788889999999999887653221111
Q ss_pred CC-----e-eeEEEcCCCCCeEEEEe---------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCC------------
Q 018293 209 AD-----V-ESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------ 261 (358)
Q Consensus 209 ~~-----i-~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------ 261 (358)
.. + ....+. + ..+++++ .+|.+..+|..+++ .+........
T Consensus 141 ~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~---------~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 141 QVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGK---------LLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCc---------eeeEeeccCCCcCCCCCCCCCc
Confidence 10 1 111222 1 2455554 36788999998873 3333322100
Q ss_pred --------ce-eEEEecCCCCcEEEEEeCCC------------------cEEEEecCCCCceeeEecCCCCc--------
Q 018293 262 --------AV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAG-------- 306 (358)
Q Consensus 262 --------~i-~~i~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~-------- 306 (358)
.+ .+.++.+.+ ..++.++.++ .|.-+|..+++..-......+..
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred ceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 01 123444444 5677776555 68899999998533332222211
Q ss_pred e-eEEEEEcCCCC--eEEEEEccCCeEEEEEccCCCcccc
Q 018293 307 A-VFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 307 ~-v~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
+ +..+. .-++. .+++.++.+|.+...|..+|+.+-+
T Consensus 288 p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 288 PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 1 11111 01222 2467788899999999999998754
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.75 E-value=0.025 Score=49.61 Aligned_cols=242 Identities=14% Similarity=0.151 Sum_probs=126.3
Q ss_pred cccCCCceEEec-----CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 60 KDREKGNFMAVG-----SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 60 ~~s~~~~~l~~g-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
.+||+|+++|.+ +....|+++|+.+++.+.... ....-..+.|.+++
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----------------------------~~~~~~~~~W~~d~ 181 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----------------------------ENPKFSSVSWSDDG 181 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----------------------------EEEESEEEEECTTS
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----------------------------cccccceEEEeCCC
Confidence 458999999854 222479999998764433110 01112238999995
Q ss_pred CcEEEEEEcC----------CeEEEEECCCCcee--eeecccccc--eeeEEEcCCCCcEEEEEeCCC---cEEEEEccc
Q 018293 135 RNILASASAD----------KQVKIWDVAAGKCN--LTLEHHTDK--VQAVAWNHHSPQILLSGSFDR---SVVMKDARI 197 (358)
Q Consensus 135 ~~~l~s~~~d----------g~v~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 197 (358)
..++.+...+ ..|..|.+.+.... ..+...... ...+..++++..+++...... .+.+.|+..
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 5455554333 23778887766432 333333322 567888999844444444433 477777776
Q ss_pred C----CCccceeeecCCe-eeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEE
Q 018293 198 S----THSGFKWAVAADV-ESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTIS 267 (358)
Q Consensus 198 ~----~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~ 267 (358)
. ............+ ..+... ++.+++... .++.|.-.++..... ......+..+.. .+..+.
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 262 GGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp TTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEE
T ss_pred cCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEE
Confidence 4 1222222223333 333333 333444432 346677777776521 011224445544 455555
Q ss_pred ecCCCCcEEEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC---CeEEEEEccCCCc
Q 018293 268 YNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDAG 340 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~ 340 (358)
.. +..+++....++. |+++++..+......... ..+.|..+...+++..+.+..+.- +++..||+.+++.
T Consensus 334 ~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 334 LF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 54 3356666666665 888998823222222333 345577777677766555554433 5788899988764
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.019 Score=47.50 Aligned_cols=227 Identities=11% Similarity=0.008 Sum_probs=122.2
Q ss_pred ccCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 61 DREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 61 ~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
|.++.. ++.+--..+.|.-|+..++.... + .+.+.+.++..-..++ .|+
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~----------------------------~-~~p~~~~~~~~~d~~g-~Lv 81 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV----------------------------F-PSPGGFSSGALIDAGG-RLI 81 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE----------------------------E-ECCCCcccceeecCCC-eEE
Confidence 456665 44555566788888775332111 0 1223344444443424 454
Q ss_pred EEEcCCeEEEEECCCCceeeeec----c-cccceeeEEEcCCCCcEEEEEeC-----------CCcEEEEEcccCCCccc
Q 018293 140 SASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF-----------DRSVVMKDARISTHSGF 203 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~ 203 (358)
++. ..+.+++.+++..+..+. + .....+.+...|+| .+.++... -|.++.+|. .+.....
T Consensus 82 ~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l 157 (307)
T COG3386 82 ACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRL 157 (307)
T ss_pred EEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEe
Confidence 443 336777776665422221 1 12345677888888 54443322 133444443 2333332
Q ss_pred eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293 204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 283 (358)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 283 (358)
...+-...+.++|+|++..++++=+..+.|.-|++....... .............+..-.++...+| ++.+++..+|
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g 234 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGG 234 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCcceEEEccCCCCCCCceEEeCCC-CEEEecccCC
Confidence 233345567899999877666666667889888886411100 0001122222344556677788777 5554444444
Q ss_pred -cEEEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEccC
Q 018293 284 -MVKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK 327 (358)
Q Consensus 284 -~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d 327 (358)
.|.+|+.. +++.....+. ...+++++|- |+.+.+++++...
T Consensus 235 ~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEecCC
Confidence 89999998 6644444433 3567778885 4556577777655
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00012 Score=39.19 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=33.1
Q ss_pred ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293 156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 194 (358)
Q Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 194 (358)
++...+..|...|.++.|.+.+ ..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4556677788899999999988 8899999999999996
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.68 E-value=0.0011 Score=60.07 Aligned_cols=186 Identities=5% Similarity=0.029 Sum_probs=92.8
Q ss_pred CcEEEEEEcC------CeEEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCc
Q 018293 135 RNILASASAD------KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS 201 (358)
Q Consensus 135 ~~~l~s~~~d------g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 201 (358)
+.+++.|+.+ ..+..||..+.+-. ..+....... +++. -++ .+.+.|+.++ .+..||..+.+-.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDD-TIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 4577777753 34778888766432 1111111111 2222 234 6777787654 4778888765321
Q ss_pred c--ceeeecCCeeeEEEcCCCCCeEEEEecCC-----------------------eEEEEEcccCCCCCCCCCCCccEEE
Q 018293 202 G--FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTL 256 (358)
Q Consensus 202 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~ 256 (358)
. ...........+.. ++.+.+.|+.++ .+..||..+.+- ..+..+
T Consensus 381 ~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-------~~v~~m 450 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-------ETLPNF 450 (557)
T ss_pred ECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-------eecCCC
Confidence 1 01111111222222 355677776542 467787766421 111111
Q ss_pred eecCCceeEEEecCCCCcEEEEEeCC------CcEEEEecCC-CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-
Q 018293 257 HAHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG- 328 (358)
Q Consensus 257 ~~~~~~i~~i~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 328 (358)
...... .+++.. ++ .+.+.|+.+ ..+..||..+ .+...+..+.........+.+ +|. ++++||.+|
T Consensus 451 ~~~r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~ 524 (557)
T PHA02713 451 WTGTIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESY 524 (557)
T ss_pred Cccccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecce
Confidence 111111 122222 23 566667654 2367899988 565444444333332222232 455 899999888
Q ss_pred -eEEEEEccCCC
Q 018293 329 -KLEIWDTLSDA 339 (358)
Q Consensus 329 -~i~vw~~~~~~ 339 (358)
.+..||..+.+
T Consensus 525 ~~~e~yd~~~~~ 536 (557)
T PHA02713 525 MLQDTFNVYTYE 536 (557)
T ss_pred eehhhcCccccc
Confidence 77788877644
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.003 Score=54.19 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=95.7
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC------cEEEEEeCCCcEEEEEcccCCCccce------
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFK------ 204 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~------ 204 (358)
+|.++.....++-.|++.|+.+.+..-+.. |.-+.+.|+.. ..-+.|-.|..|.-||.+-...-...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455556667788899999999999987666 77777777642 12245667889999999854431111
Q ss_pred eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 284 (358)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 284 (358)
........|.+-.. ..++++|+.+|.|++||--.. .....+++-..+|..+..+.+| .+|++.+ +..
T Consensus 427 y~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty 493 (644)
T KOG2395|consen 427 YSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTADG-KWILATC-KTY 493 (644)
T ss_pred cccccccceeeecC--CceEEEeecCCcEEeehhhhh---------hhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence 11223345555444 448999999999999998332 4445567778899999999998 5555444 556
Q ss_pred EEEEec
Q 018293 285 VKLWDL 290 (358)
Q Consensus 285 i~i~d~ 290 (358)
+.+-++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 666665
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.65 E-value=0.013 Score=49.24 Aligned_cols=200 Identities=13% Similarity=0.133 Sum_probs=95.3
Q ss_pred ecCCCCCcEEEEEEcCCe--EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293 129 AWNKEFRNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 206 (358)
Q Consensus 129 ~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 206 (358)
+|.++|.++|+++..||. +.+.|+.+++..+...+.........++|++ +.++-......|+-.|+++.+.......
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 578887778887777764 6666888887665554332334456777887 6665555567888899988775543333
Q ss_pred ecCCeeeEEEcCCCCCeEEEEec-----------------------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293 207 VAADVESLAWDPHAEHSFVVSLE-----------------------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 263 (358)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~~~~-----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (358)
....+....|..+.....++|.. ...|.-.|+.++ + ...+..-...+
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG---------~-~~~v~~~~~wl 190 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG---------E-RKVVFEDTDWL 190 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------------EEEEEEESS-E
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC---------c-eeEEEecCccc
Confidence 34444445564322233344321 112333444433 2 23333345667
Q ss_pred eEEEecCCCCcEEEEEeC---CCc-EEEEecCC--CCceeeEecCCCCceeEEEEEcCCCCeEEEEEc----cCCeEEEE
Q 018293 264 CTISYNPLVPNLLATGST---DKM-VKLWDLSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIW 333 (358)
Q Consensus 264 ~~i~~~~~~~~~l~~~~~---dg~-i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vw 333 (358)
.-+.|+|..+.+|+-|.+ +.. -+||-+++ .....+... .....+..=-|.|||..+..-+- .+..|.-+
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 888999988666666554 221 25565543 332222222 12344556678999986554332 24456777
Q ss_pred EccCCCc
Q 018293 334 DTLSDAG 340 (358)
Q Consensus 334 ~~~~~~~ 340 (358)
|+.+++.
T Consensus 270 d~~t~~~ 276 (386)
T PF14583_consen 270 DPDTGER 276 (386)
T ss_dssp -TTT--E
T ss_pred CCCCCCc
Confidence 7777653
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.60 E-value=0.00022 Score=38.04 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=32.7
Q ss_pred CccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293 251 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289 (358)
Q Consensus 251 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d 289 (358)
.+...+..|...|.++.|.+.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4455667788899999999987 8999999999999996
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.58 E-value=0.053 Score=48.91 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=83.1
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc--ccEEE-EecCCCCCcEEEEE
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLG-LAWNKEFRNILASA 141 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~-~~~~~~~~~~l~s~ 141 (358)
+..++.++.|+.|.-.|..+++..-..... .+. ..+++ -... + + .++.+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-------------------------~~~~~~~~tssP~v~-~-g-~Vivg 171 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNG-------------------------DYKAGYTITAAPLVV-K-G-KVITG 171 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccc-------------------------cccccccccCCcEEE-C-C-EEEEe
Confidence 456777888999999999887765432110 000 01111 0011 2 3 44444
Q ss_pred E------cCCeEEEEECCCCceeeeeccccc-------------------------------ce-eeEEEcCCCCcEEEE
Q 018293 142 S------ADKQVKIWDVAAGKCNLTLEHHTD-------------------------------KV-QAVAWNHHSPQILLS 183 (358)
Q Consensus 142 ~------~dg~v~iwd~~~~~~~~~~~~~~~-------------------------------~v-~~~~~~~~~~~~l~~ 183 (358)
. .+|.|..+|.++|+.+..+..-.. .+ ..+.+.+.. .+++.
T Consensus 172 ~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~ 250 (527)
T TIGR03075 172 ISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYF 250 (527)
T ss_pred ecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEE
Confidence 3 268999999999988766532111 01 123455554 44444
Q ss_pred EeC-----CC-----------cEEEEEcccCCCccceeeecC---------CeeeEEEcCCCC--CeEEEEecCCeEEEE
Q 018293 184 GSF-----DR-----------SVVMKDARISTHSGFKWAVAA---------DVESLAWDPHAE--HSFVVSLEDGTIKGF 236 (358)
Q Consensus 184 ~~~-----dg-----------~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~--~~~~~~~~dg~i~i~ 236 (358)
+.. ++ +|.-.|+++++..-....... ...-+.+..++. ..++.+..+|.+++.
T Consensus 251 ~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vl 330 (527)
T TIGR03075 251 GTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVL 330 (527)
T ss_pred eCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEE
Confidence 431 12 566677777776543322111 122223323333 477789999999999
Q ss_pred EcccCCC
Q 018293 237 DIRTAKS 243 (358)
Q Consensus 237 d~~~~~~ 243 (358)
|.++++.
T Consensus 331 Dr~tG~~ 337 (527)
T TIGR03075 331 DRTNGKL 337 (527)
T ss_pred ECCCCce
Confidence 9998865
No 376
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=1.3e-05 Score=67.40 Aligned_cols=210 Identities=18% Similarity=0.223 Sum_probs=139.8
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
+-.......|-|.+.+ ++.++.+..+..|| +.++...... .+.....++|..+++..++.+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3334445578888665 77777888999999 4455544444 3556678899998877788888999999999987655
Q ss_pred ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293 201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 280 (358)
.....+....-.-+.|++ +...++.+...|.+.+|+.... +.......|...++++++.+.+ +.+.++
T Consensus 110 qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d 177 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD 177 (615)
T ss_pred HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence 443333333334478888 5667888889999999999876 4444555588889999999854 444444
Q ss_pred CCCc----------EEEEecCCC----------------------------------------CceeeEecCCCCceeEE
Q 018293 281 TDKM----------VKLWDLSNN----------------------------------------QPSCIASRNPKAGAVFS 310 (358)
Q Consensus 281 ~dg~----------i~i~d~~~~----------------------------------------~~~~~~~~~~~~~~v~~ 310 (358)
.|.. +..+..... ++..+ .++...+.+.+
T Consensus 178 cd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~c 256 (615)
T KOG2247|consen 178 CDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC 256 (615)
T ss_pred cHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence 4432 333332210 01112 33333456788
Q ss_pred EEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293 311 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348 (358)
Q Consensus 311 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 348 (358)
..|--||. +.-+..-|.|..-.+.+++...++|...
T Consensus 257 yrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqkl 292 (615)
T KOG2247|consen 257 YRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQKL 292 (615)
T ss_pred EEEecccc--ccccccceeEEEEeccchHHHHHHHHHh
Confidence 88888886 3346666777777788888777666544
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00045 Score=52.55 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=68.4
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
+.-+++|+.+|.|++|+.+....+... ...-...|.++--.-+.+.+..+++.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQD 123 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEeccC
Confidence 567899999999999998732222111 011223344443333334589999999
Q ss_pred CeEEEEECCCCceeeeecccc-cceeeEEEcCCCCcEEEEE--eCCCcEEEEEccc
Q 018293 145 KQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI 197 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 197 (358)
|.|+.|+++-++.+.....|. .++..+.....+ .++..+ +.|..++.|++..
T Consensus 124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 999999999888877777776 445444444444 455555 6666677776653
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.032 Score=44.66 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=107.8
Q ss_pred CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 198 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 198 (358)
+-...+.++.|+|+ .+.|++......-.++=..+|+.+.++.-. -.....+.+..++ .++++--.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence 44556999999999 556666666666667766788888877421 1234567787777 77777778888888877654
Q ss_pred CCccc----e------eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC-CCCCCccEEEeecCCceeEEE
Q 018293 199 THSGF----K------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTIS 267 (358)
Q Consensus 199 ~~~~~----~------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~ 267 (358)
..... . .........++|+|.+. .++..-+..-+.+|.......... .....+.....-.-..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32110 0 11145678899999655 666666677777777764321100 000000001011124578889
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 268 YNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
|++..+.+|+-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 99877678888888888888887654
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.51 E-value=0.024 Score=51.56 Aligned_cols=146 Identities=11% Similarity=0.082 Sum_probs=75.0
Q ss_pred CcEEEEEEcCC-----eEEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCC-------------------
Q 018293 135 RNILASASADK-----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR------------------- 188 (358)
Q Consensus 135 ~~~l~s~~~dg-----~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------------------- 188 (358)
+.+.+.|+.++ ++..||..+.+-. ..+.........+.. ++ .+.+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccc
Confidence 45677777654 4888998766432 222211111112222 34 6777777543
Q ss_pred ----cEEEEEcccCCCc--cceeeecCCeeeEEEcCCCCCeEEEEecC------CeEEEEEccc-CCCCCCCCCCCccEE
Q 018293 189 ----SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFT 255 (358)
Q Consensus 189 ----~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~ 255 (358)
.+..||..+.+-. ............+.+ ++.+.+.|+.+ ..+..||..+ .+ ...+..
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~ 498 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITT 498 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccc
Confidence 4667887665321 111111111122222 34566777654 2467888876 32 122223
Q ss_pred EeecCCceeEEEecCCCCcEEEEEeCCC--cEEEEecCCCCce
Q 018293 256 LHAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPS 296 (358)
Q Consensus 256 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 296 (358)
+.........+.+ ++ .+.++|+.++ .+..||..+.+..
T Consensus 499 m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 499 TESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cCcccccceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence 3322222222333 23 7888999888 6888888887753
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.46 E-value=0.04 Score=50.09 Aligned_cols=145 Identities=18% Similarity=0.153 Sum_probs=75.5
Q ss_pred CcEEEEEEcCCe-----EEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCC------cEEEEEcccCCCc
Q 018293 135 RNILASASADKQ-----VKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHS 201 (358)
Q Consensus 135 ~~~l~s~~~dg~-----v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~ 201 (358)
+.+.|.|+.||. |-.||..+.+-. ..+.......-.+.+ ++ .+.++|+.++ ++..||..++.-.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g-~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GG-KLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CC-EEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 668888988864 777887765432 212111111112222 33 6777777554 4667787765422
Q ss_pred c--ceeeecCCeeeEEEcCCCCCeEEEEecCCe-----EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 202 G--FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 202 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
. .............+ ++.++++|+.|+. |..||..+.+- ..+..+......+-...+ +..
T Consensus 458 ~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-------~~v~~m~~~rs~~g~~~~---~~~ 524 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQW-------TMVAPMTSPRSAVGVVVL---GGK 524 (571)
T ss_pred ecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCce-------eEcccCccccccccEEEE---CCE
Confidence 1 11111122222222 4568888887763 67788876531 222222222222222222 236
Q ss_pred EEEEEeCCCc-----EEEEecCCCCc
Q 018293 275 LLATGSTDKM-----VKLWDLSNNQP 295 (358)
Q Consensus 275 ~l~~~~~dg~-----i~i~d~~~~~~ 295 (358)
+.++|+.||. |..||..+.+.
T Consensus 525 ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 525 LYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEEEecccCccccceeEEcCCCCCce
Confidence 7788887764 66677766653
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.048 Score=45.18 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=112.4
Q ss_pred EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-
Q 018293 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA- 206 (358)
Q Consensus 128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 206 (358)
-.|.++.+.++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+ ..|+++. . .+.+++...+........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACE-H-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEc-c-ccEEEeccCCceeEEeccc
Confidence 357787565777777889999999887643 2333 23334444444443 3444443 2 345556544433111111
Q ss_pred ----ecCCeeeEEEcCCCCCeEEEEecC------------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293 207 ----VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 270 (358)
Q Consensus 207 ----~~~~i~~~~~~~~~~~~~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 270 (358)
.....+.+...|++. +..++.. |.++-+|. .+ .....+..+-..-+.|+|+|
T Consensus 105 ~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g---------~~~~l~~~~~~~~NGla~Sp 172 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DG---------GVVRLLDDDLTIPNGLAFSP 172 (307)
T ss_pred cCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CC---------CEEEeecCcEEecCceEECC
Confidence 124466777888643 3333333 22333332 12 33344444445568899999
Q ss_pred CCCcEEEEEeCCCcEEEEecCC--C---CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-eEEEEEccCCCccccc
Q 018293 271 LVPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNR 344 (358)
Q Consensus 271 ~~~~~l~~~~~dg~i~i~d~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~ 344 (358)
|+..++++=+..+.|.-|++.. + ............+..-.++...+|. +.+++..+| .|.+|+.. ++++.+.
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEE
Confidence 9955555555568888887752 1 1111222333445566788888898 454444444 89999988 7776654
Q ss_pred ccc
Q 018293 345 FSK 347 (358)
Q Consensus 345 ~~~ 347 (358)
...
T Consensus 251 ~lP 253 (307)
T COG3386 251 KLP 253 (307)
T ss_pred ECC
Confidence 443
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.008 Score=56.13 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=73.4
Q ss_pred CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293 65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 144 (358)
Q Consensus 65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 144 (358)
+..++.|+..|.+...|+...-. +...-..-.++|++++|+.+ +..++.|-.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~--------------------------~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~ 151 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLG--------------------------PLHQNERVQGPVTSVAFNQD-GSLLLAGLGD 151 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccc--------------------------hhhcCCccCCcceeeEecCC-CceeccccCC
Confidence 44678888888888888754211 00111234578999999999 6799999999
Q ss_pred CeEEEEECCCCceeeeecccccceeeEE---EcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 145 KQVKIWDVAAGKCNLTLEHHTDKVQAVA---WNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
|.|.+||+..++.++.+..|..+.+++- +..++ ..++++...|. +|.+.
T Consensus 152 G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 152 GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence 9999999999999888877776665543 34444 56888887776 56543
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.43 E-value=0.061 Score=45.91 Aligned_cols=186 Identities=14% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCCCcEEEEEEcC------CeEEEEECCCCceeeeeccc---ccceeeEEEcCCCCcEEEEEeC----------------
Q 018293 132 KEFRNILASASAD------KQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF---------------- 186 (358)
Q Consensus 132 ~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~---------------- 186 (358)
|+ +.+++++-.| |-+.+.|-++.+........ ...-..+-|.|.. +.++++..
T Consensus 139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHH
T ss_pred CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhh
Confidence 55 5567665332 46888888877776666432 2334567778876 67777653
Q ss_pred ----CCcEEEEEcccCCCccceeeec--CCeeeEEEc--CCCCCeEEEEecCCeEEEEEc-ccCCCCCCCCCCCccEEEe
Q 018293 187 ----DRSVVMKDARISTHSGFKWAVA--ADVESLAWD--PHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTLH 257 (358)
Q Consensus 187 ----dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~ 257 (358)
..++.+||+.+.+..+...-.. ..+..+.|. |+...-++.+.-..+|..|-. ..+.-.. +.+..+.
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a-----~kVi~ip 291 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA-----EKVIDIP 291 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE-----EEEEEE-
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee-----eEEEECC
Confidence 3579999999887765332221 234456664 433333444444455554443 3221100 1112221
Q ss_pred e-----------------cCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCC-ceeeEec--C--------------
Q 018293 258 A-----------------HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-PSCIASR--N-------------- 302 (358)
Q Consensus 258 ~-----------------~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~--~-------------- 302 (358)
. -..-|+.|.+|.|+ ++|...+ .+|.|+.||+.... +..+... .
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~ 370 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK 370 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred CcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence 1 13457999999998 6666555 58999999998743 2222211 0
Q ss_pred CCCceeEEEEEcCCCCeEEEEEc
Q 018293 303 PKAGAVFSVAFSEDSPFVLAIGG 325 (358)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~l~~~~ 325 (358)
.-.+...-+..|-||+.+++|.|
T Consensus 371 ~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 371 RLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---S----EEE-TTSSEEEEE--
T ss_pred ccCCCCCeEEEccCCeEEEEEee
Confidence 01223466888999987777654
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.015 Score=46.45 Aligned_cols=174 Identities=11% Similarity=0.134 Sum_probs=100.0
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
.+-...+.++.|+|+. +.|++......-.++=...++.+... ...-.....+.+.. ++.++++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence 3444559999999999 55555555555555544444443321 12234556677765 444555555678888887766
Q ss_pred CCCCCCCCCC-CccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC-ceeeEecCCC-------CceeEEE
Q 018293 241 AKSDPDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-PSCIASRNPK-------AGAVFSV 311 (358)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-------~~~v~~~ 311 (358)
.......... -++......+...-.++|.|.+ +.|+.+-+..-+.||...... .........+ -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5221111100 0111111225567899999988 666666666667777765432 1111111111 1247778
Q ss_pred EEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 312 AFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
.|.+....+|+-+.+++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 888866668888888888877776543
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.36 E-value=0.057 Score=49.24 Aligned_cols=192 Identities=11% Similarity=0.156 Sum_probs=98.3
Q ss_pred ccEEEEecCCCCCcEEEEEE-----cCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC--------
Q 018293 123 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-------- 187 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~-----~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------- 187 (358)
..+...+++|+|....++.. .|. .+.+++. .+.......+ ...+.-.|+|+| ..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG-~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDA-DAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCC-CceEEEecCcceEEEec
Confidence 46788899999654444432 243 4555554 2222222232 237788999998 445444322
Q ss_pred ----CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCc
Q 018293 188 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKA 262 (358)
Q Consensus 188 ----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (358)
+.+.+.++..++... .....|..+.|+|++..++++. +|.|++--+.....-. .. ......+.. -...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee-ecccEEeecccCCc
Confidence 233333444333222 3456799999999877555544 4777773332211000 00 011112222 2334
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEec--CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEE
Q 018293 263 VCTISYNPLVPNLLATGSTDKMVKLWDL--SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 331 (358)
Q Consensus 263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 331 (358)
+.++.|.+++ .+ +++..++.-.+|.+ ..... ..........++.+++-+++ . +++ ...+|.+.
T Consensus 499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~-~-iyv-~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS-T-VYV-TDARAVLQ 563 (591)
T ss_pred cccceEecCC-EE-EEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc-e-EEE-EcCCceEE
Confidence 6889999987 54 45555554445544 33221 11112223566777887764 3 444 56666443
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.33 E-value=0.082 Score=45.16 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=52.6
Q ss_pred CCeEEEEECCCCceeeeecccc--cceeeEEEcC--CCCcEEEEEeCCCcEEEEEc-ccCCC----cc------------
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNH--HSPQILLSGSFDRSVVMKDA-RISTH----SG------------ 202 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~-~~~~~----~~------------ 202 (358)
..++.+||+.+.+.++++.-.. .....+.|.. +...-++.+....+|..|-- ..++- +.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4589999999999999886432 3456677754 34233444445555555433 22210 00
Q ss_pred -----ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293 203 -----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 203 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
.......-++.+..+.|+..+.+++-..|.|+.||+....
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0011134578999999877666677789999999998864
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.26 E-value=0.0016 Score=36.59 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=30.4
Q ss_pred CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293 305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
...|..++|+|... ++|.+..+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence 45699999999999 7999999999999999 66554
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.24 E-value=0.038 Score=50.35 Aligned_cols=173 Identities=11% Similarity=0.047 Sum_probs=88.2
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-----CCC--cEEEEEcccCCCccceeeecCCeeeEEE
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDR--SVVMKDARISTHSGFKWAVAADVESLAW 216 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 216 (358)
+|.+.-.+-..-.++.-..+....+.+.+++|++...+++.. .|. .|.+++. +...... ......+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~l-t~g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQV-LEGHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceee-ecCCCCCCceE
Confidence 666655442222233222233346788999999954444442 244 4445454 2222212 22334788899
Q ss_pred cCCCCCeEEEEec-----------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293 217 DPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285 (358)
Q Consensus 217 ~~~~~~~~~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 285 (358)
+|++..+.++... .+.+.+.++..+ .... .....|..+.|+||| ..++... ++.|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v 470 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKV 470 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEE
Confidence 9975533333211 123333344332 1111 234579999999999 4444433 4777
Q ss_pred EE---EecCCCCceee---EecC-CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 286 KL---WDLSNNQPSCI---ASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 286 ~i---~d~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
.+ -....+.. .+ ..+. .-...+.++.|.+++. ++ .+..++.-.+|.+.
T Consensus 471 ~Va~Vvr~~~G~~-~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 471 YLAVVEQTEDGQY-ALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEeCCCCce-eecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence 76 44334431 11 1121 2233467899999998 44 34444444455543
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.24 E-value=0.033 Score=48.93 Aligned_cols=159 Identities=13% Similarity=0.253 Sum_probs=95.2
Q ss_pred cceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC---CCeEEEEecCCeEEEEEccc
Q 018293 166 DKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~ 240 (358)
.++..++|. ||.+.+++.- .+|.+++=|.. ..+.-..|..+.|.|-+ ...+++--....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc-------EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578889996 4435555543 23333332221 33445678899998842 22455556788999999974
Q ss_pred CCCCCCCCCCCccEEEeec-----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293 241 AKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 315 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 315 (358)
..... .+.+.....+ .---..+.|+|.. ..|++-.....=.+++++.........+ ...+.|.|.+|.+
T Consensus 92 s~~e~----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTER----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred Ccccc----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 32211 1222221111 1123567899976 5666655544444667665543333334 4568899999999
Q ss_pred CCCeEEEEEccCCeEEEEEccCC
Q 018293 316 DSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
||+.++++.+..=.-++||-...
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchh
Confidence 99977776676667788986544
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.20 E-value=0.071 Score=45.95 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=60.3
Q ss_pred CccccCCCceEEecCCCCeEEE---EEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEecCCC
Q 018293 58 PLKDREKGNFMAVGSMEPAIEI---WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKE 133 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~v---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~ 133 (358)
.+..+|++++||.+..+..+.+ |+........... .......+.... ..|+++.|-|-
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~------------------~~~~~g~l~~~~~e~ITsi~clpl 67 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTY------------------SISWSGPLDDEPGECITSILCLPL 67 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeE------------------EEEeeeeccCCCCCEEEEEEEEEe
Confidence 3445899999999988876665 5442211110000 000011111111 45666655321
Q ss_pred ----------CCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcC
Q 018293 134 ----------FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 175 (358)
Q Consensus 134 ----------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 175 (358)
+...++.|..+|.|++|. ++|.++..-.-|..+|..+....
T Consensus 68 ~s~~~s~~~~dw~~I~VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 68 SSQKRSTGGPDWTCIAVGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccccCCCCCcEEEEEEecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 156899999999999998 57877766667899999998854
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0024 Score=59.42 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=73.0
Q ss_pred CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293 222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301 (358)
Q Consensus 222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 301 (358)
..++.|++.|.+...|+... ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++......
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeee
Confidence 36888999999999998764 12223333446899999999998 8999999999999999999886555444
Q ss_pred CCC-CceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 302 NPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 302 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
.++ ...|..+.+..++. .+.++...|. +|.+.
T Consensus 171 ~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 333 22344445555555 5778877776 56654
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.17 E-value=0.12 Score=43.73 Aligned_cols=249 Identities=15% Similarity=0.107 Sum_probs=117.0
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---C
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---F 134 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~ 134 (358)
+++|.|||++|++- ..|.|++++.+ +......... .............++++|+ +
T Consensus 6 ~~a~~pdG~l~v~e-~~G~i~~~~~~-g~~~~~v~~~--------------------~~v~~~~~~gllgia~~p~f~~n 63 (331)
T PF07995_consen 6 SMAFLPDGRLLVAE-RSGRIWVVDKD-GSLKTPVADL--------------------PEVFADGERGLLGIAFHPDFASN 63 (331)
T ss_dssp EEEEETTSCEEEEE-TTTEEEEEETT-TEECEEEEE---------------------TTTBTSTTBSEEEEEE-TTCCCC
T ss_pred EEEEeCCCcEEEEe-CCceEEEEeCC-CcCcceeccc--------------------ccccccccCCcccceeccccCCC
Confidence 34557899877765 49999999933 2211111100 0123345667899999984 1
Q ss_pred CcEEEEEEcC--------CeEEEEECCCC-------cee-eeecc---cccceeeEEEcCCCCcEEEEEeCCC-------
Q 018293 135 RNILASASAD--------KQVKIWDVAAG-------KCN-LTLEH---HTDKVQAVAWNHHSPQILLSGSFDR------- 188 (358)
Q Consensus 135 ~~~l~s~~~d--------g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg------- 188 (358)
+.+.++.+.. ..|.-|....+ +.+ ..+.. ....-..|.|.|++ .+.++.+..+
T Consensus 64 ~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~ 142 (331)
T PF07995_consen 64 GYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQD 142 (331)
T ss_dssp -EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCS
T ss_pred CEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccc
Confidence 3333333321 23444444333 111 11121 23345679999999 6666655432
Q ss_pred ------cEEEEEcccCC----C-------ccceee-ecCCeeeEEEcCCCCCeEEE-EecCCeEEEEEcccCCCC-----
Q 018293 189 ------SVVMKDARIST----H-------SGFKWA-VAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSD----- 244 (358)
Q Consensus 189 ------~i~i~d~~~~~----~-------~~~~~~-~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~----- 244 (358)
.|.-.+....- . ...... --.-...++|+|..+.++++ -+.++.=.|.-+..+...
T Consensus 143 ~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~ 222 (331)
T PF07995_consen 143 PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYC 222 (331)
T ss_dssp TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTB
T ss_pred cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCC
Confidence 33333322110 0 000111 11224578999963434433 122332333333332210
Q ss_pred ---------------CCCCCCCccEEEeecCCceeEEEecCCC------CcEEEEEeCCCcEEEEecCCCCc-eeeEe-c
Q 018293 245 ---------------PDSTSQQSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIAS-R 301 (358)
Q Consensus 245 ---------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-~ 301 (358)
.......+...+..| ..+..+.|.+.. +.++++.-..+.|....+..... ..... +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 301 (331)
T PF07995_consen 223 EGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL 301 (331)
T ss_dssp SSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred cCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc
Confidence 000112344445544 556777776422 14666665567788888764432 12222 2
Q ss_pred CCCCceeEEEEEcCCCCeEEEEEccCCeEE
Q 018293 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 331 (358)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 331 (358)
......+..+++.|||. |+++-+.+|.|+
T Consensus 302 ~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 302 GGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp TTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred ccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 33445899999999998 677767788764
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.01 Score=55.77 Aligned_cols=147 Identities=15% Similarity=0.127 Sum_probs=92.4
Q ss_pred ceeeEEEcCCCCcEEEE--EeCCCcEEEEEcccCCCcc-----------ceeeecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293 167 KVQAVAWNHHSPQILLS--GSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI 233 (358)
Q Consensus 167 ~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i 233 (358)
++..+...+|+ ...++ .+.+-.|..||++.-.... ..........++.|+|.-....++...|+.|
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45555556665 33333 3344478899987543221 0111223466788999766677888899999
Q ss_pred EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-CceeEEEE
Q 018293 234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVA 312 (358)
Q Consensus 234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~ 312 (358)
++..+.... .....+ ......++++|+|.| ..++.|-..|++.-|...-.....+...... ...|.+++
T Consensus 181 ~V~~~~~~~--------~~v~s~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQLA--------QNVTSF-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhhh--------hhhccc-CcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 998876542 222222 234568999999998 8899999999999887654321111111111 46799999
Q ss_pred EcCCCCeEEEEE
Q 018293 313 FSEDSPFVLAIG 324 (358)
Q Consensus 313 ~~~~~~~~l~~~ 324 (358)
|.....++++-+
T Consensus 251 Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 251 WLSTQEFLVVYG 262 (1405)
T ss_pred EecceeEEEEec
Confidence 998887654444
No 394
>PHA03098 kelch-like protein; Provisional
Probab=97.15 E-value=0.021 Score=51.93 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=87.3
Q ss_pred CcEEEEEEcCC------eEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCc
Q 018293 135 RNILASASADK------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS 201 (358)
Q Consensus 135 ~~~l~s~~~dg------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 201 (358)
+.+++.|+.++ .+..||..+.+.... +.........+.. ++ .+++.|+.++ .+..||..+.+-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34666666543 577888877654221 1111111222222 34 6777777653 4667777654321
Q ss_pred cce-eeecCCeeeEEEcCCCCCeEEEEecC------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 202 GFK-WAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 202 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
... ......-.+++.. ++.+++.|+.+ ..+..||..+.+-.. ...+...... .+++.. ++ .
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-------~~~~p~~r~~-~~~~~~-~~-~ 439 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-------GSPLPISHYG-GCAIYH-DG-K 439 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeee-------cCCCCccccC-ceEEEE-CC-E
Confidence 100 0011111112222 34566666632 457888887653211 1111111111 122222 23 5
Q ss_pred EEEEEeCCC--------cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293 275 LLATGSTDK--------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD 338 (358)
Q Consensus 275 ~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 338 (358)
+++.|+.++ .+.+||..+.+...+............+.+ ++. +++.||.+ +.+.+||..+.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCC
Confidence 666666432 388899988764333222211111112222 555 67777754 47888988764
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.12 E-value=0.0023 Score=35.93 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=29.8
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 157 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 157 (358)
....|.+++|+|. ..+||.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999 679999999999999998 4543
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.06 E-value=0.037 Score=48.64 Aligned_cols=152 Identities=14% Similarity=0.186 Sum_probs=91.4
Q ss_pred ccEEEEecCCCCCcEEEEEE--cCCeEEEEECCCCceeeeecccccceeeEEEcCCC---CcEEEEEeCCCcEEEEEccc
Q 018293 123 DSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDARI 197 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~ 197 (358)
.+|..++|.. |...+++.- .+|.+++=| .+.+..| ..|..+.|.|-+ ...+++......|.+|.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4688899974 355666553 344444322 2334444 358899998853 13566777888999999863
Q ss_pred CC--Cccceee----ecC----CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293 198 ST--HSGFKWA----VAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 267 (358)
Q Consensus 198 ~~--~~~~~~~----~~~----~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 267 (358)
.. ....... ... -...+.|+|... .+++-+....-.+++++... ..+..-....+.|.|.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~--------srVkaDi~~~G~IhCAC 162 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDS--------SRVKADIKTSGLIHCAC 162 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCC--------ceEEEeccCCceEEEEE
Confidence 21 1111111 111 235678999544 66665555444567777652 22322224467899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecC
Q 018293 268 YNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
|.+||.+++++.+..=.-++||-.
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecCc
Confidence 999997666666655557788854
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.066 Score=42.68 Aligned_cols=156 Identities=11% Similarity=0.075 Sum_probs=94.9
Q ss_pred CceeeeecccccceeeEEEcCCCCcEEEEEeCCCc-EEEEEcccCCCccceeeecCC--eeeEEEcCCCCCeEEEEe---
Q 018293 155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSL--- 228 (358)
Q Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~--- 228 (358)
|+++.... .......+.|+|..+.-++.+-.-|+ ..++|....+........+.. .-.=.|+|++. ++++.-
T Consensus 58 Gk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndf 135 (366)
T COG3490 58 GKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDF 135 (366)
T ss_pred Cceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCC
Confidence 44443332 23445568888887777777776665 567888877665533322221 22346889765 444432
Q ss_pred --cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC------------------CCcEEEE
Q 018293 229 --EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST------------------DKMVKLW 288 (358)
Q Consensus 229 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~------------------dg~i~i~ 288 (358)
..|.|-+||.+.. .+.+-.+..|.-.-..+.+.+|| +.++.+.. .-.+.+.
T Consensus 136 d~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 136 DPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred CCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 2478999999966 36677778887777889999999 55554321 0123334
Q ss_pred ecCCCCceeeEecC--CCCceeEEEEEcCCCCeEEE
Q 018293 289 DLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLA 322 (358)
Q Consensus 289 d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 322 (358)
|..+++.+...++. .+...|..++..+||. +++
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwf 241 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWF 241 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeeeCCCCc-EEE
Confidence 44444443333343 3455688888888887 344
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.12 Score=41.24 Aligned_cols=189 Identities=11% Similarity=0.050 Sum_probs=101.4
Q ss_pred cccCCCceEEecCCC-----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 60 KDREKGNFMAVGSME-----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 60 ~~s~~~~~l~~g~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
.|||||.+|...-.| |.|-|||... ....+..+..|.-....+.|.+||
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~--------------------------~fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE--------------------------GFQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc--------------------------ccceecccccCCcCcceeEEecCC
Confidence 469999999765433 7899999862 222333445566677788899995
Q ss_pred CcEEEEEEc------------------CCeEEEEECCCCceeeee--c--ccccceeeEEEcCCCCcEEEEEeCCCc---
Q 018293 135 RNILASASA------------------DKQVKIWDVAAGKCNLTL--E--HHTDKVQAVAWNHHSPQILLSGSFDRS--- 189 (358)
Q Consensus 135 ~~~l~s~~~------------------dg~v~iwd~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~l~~~~~dg~--- 189 (358)
. .++.+.. .-++.+.|..+|+++... . .+...+..++..+++ ..++.+-..|.
T Consensus 174 r-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d 251 (366)
T COG3490 174 R-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRND 251 (366)
T ss_pred c-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCcc
Confidence 5 4444321 112333444444443222 1 234567778888777 54444332221
Q ss_pred --EEEEEcccCCCccc-------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC
Q 018293 190 --VVMKDARISTHSGF-------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 260 (358)
Q Consensus 190 --i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 260 (358)
-.+=-...++.... .......|-+++.+.+.+...+++-..+...+||..++. .+.... -
T Consensus 252 ~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~---------vv~~a~--l 320 (366)
T COG3490 252 LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA---------VVSEAA--L 320 (366)
T ss_pred CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc---------EEeccc--c
Confidence 11111111221111 112335677888887666555556566778899999873 222111 1
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293 261 KAVCTISYNPLVPNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 261 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~ 290 (358)
.....++-.. .-+++.+.+|.+.++.-
T Consensus 321 ~daaGva~~~---~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 321 PDAAGVAAAK---GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred cccccceecc---CceEEecCCceEEeccc
Confidence 1233344333 23555566888888753
No 399
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.01 E-value=0.15 Score=41.97 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=90.3
Q ss_pred CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce----------
Q 018293 135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---------- 204 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------- 204 (358)
++.|+.|+.+| +.+++.........+. +...|..+...++- +.+++-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 56888998888 8999983332222222 23349999999887 4454444 599999998765443311
Q ss_pred ----eeecCCeeeEE-EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293 205 ----WAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 205 ----~~~~~~i~~~~-~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
......+..++ -....+...++......|.+|......... ......+. -...+.+++|.+ +.++.|
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f----~~~~ke~~-lp~~~~~i~~~~---~~i~v~ 154 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF----SKLLKEIS-LPDPPSSIAFLG---NKICVG 154 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc----cceeEEEE-cCCCcEEEEEeC---CEEEEE
Confidence 11223344444 112233344444456699999988742100 01223332 346788999994 567777
Q ss_pred eCCCcEEEEecCCCCceeeE
Q 018293 280 STDKMVKLWDLSNNQPSCIA 299 (358)
Q Consensus 280 ~~dg~i~i~d~~~~~~~~~~ 299 (358)
..+ ...+.|+.++....+.
T Consensus 155 ~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred eCC-ceEEEecCCCCceEEe
Confidence 654 4888999987754443
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.99 E-value=0.078 Score=48.30 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=69.6
Q ss_pred CcEEEEEEcC-----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC------CcEEEEEcccCCCc
Q 018293 135 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHS 201 (358)
Q Consensus 135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~ 201 (358)
+.+++.|+.+ ..+..||..+.+-.. .+...... .+++. -++ .+++.|+.+ ..+..||..+.+-.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 4577777765 357788887664322 11111111 11222 233 667777632 35788888765321
Q ss_pred cce--eeecCCeeeEEEcCCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293 202 GFK--WAVAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271 (358)
Q Consensus 202 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 271 (358)
... ....... ++... ++.+++.|+.+ ..+.+||..+.+-.. +..+.........+.+ +
T Consensus 420 ~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-------~~~~~~~r~~~~~~~~--~ 487 (534)
T PHA03098 420 KGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE-------LSSLNFPRINASLCIF--N 487 (534)
T ss_pred ecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceee-------CCCCCcccccceEEEE--C
Confidence 110 0001111 22222 34466666543 237888887653211 1111111111112222 3
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCCCceee
Q 018293 272 VPNLLATGSTD-----KMVKLWDLSNNQPSCI 298 (358)
Q Consensus 272 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 298 (358)
+ .+++.|+.+ ..+.+||..+.+....
T Consensus 488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred C-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 4 677777654 4688898887764333
No 401
>PHA02790 Kelch-like protein; Provisional
Probab=96.88 E-value=0.057 Score=48.30 Aligned_cols=182 Identities=10% Similarity=0.020 Sum_probs=86.2
Q ss_pred CcEEEEEEcCC-----eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC--CcEEEEEcccCCCcc--c
Q 018293 135 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSG--F 203 (358)
Q Consensus 135 ~~~l~s~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~--~ 203 (358)
+.+++.|+.++ .+..||..+++... .+....... +++. -++ .+.+.|+.+ ..+..||..+++-.. .
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 44667777543 57778887764322 222111111 2222 244 677777754 357778865442111 0
Q ss_pred eeeecCCeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293 204 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 280 (358)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 280 (358)
..........+.. ++.+.+.|+.++ .+..||.++..- .....+.........+.+ ++ .+.+.|
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W-------~~~~~m~~~r~~~~~~~~--~~-~IYv~G- 414 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW-------QFGPSTYYPHYKSCALVF--GR-RLFLVG- 414 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE-------EeCCCCCCccccceEEEE--CC-EEEEEC-
Confidence 1111111122222 355677776543 467788765421 111011111111112222 23 555665
Q ss_pred CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293 281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD 338 (358)
Q Consensus 281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 338 (358)
|.+.+||..+++...+.......... +++. -+|+ +++.||.+ ..+..||..++
T Consensus 415 --G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 --RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred --CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCC
Confidence 35788999887754433332212222 2222 2555 78888764 35778887654
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.032 Score=52.72 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=90.0
Q ss_pred cEEEEecCCCCCcEEEE--EEcCCeEEEEECCCCceee-----------eecccccceeeEEEcCCCCcEEEEEeCCCcE
Q 018293 124 SVLGLAWNKEFRNILAS--ASADKQVKIWDVAAGKCNL-----------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s--~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 190 (358)
.|..+...+| ....++ .+.+-.|..||+++-..-. +.........++.|+|.-+...+....|+.|
T Consensus 102 pi~~~v~~~D-~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHD-ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccC-CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4555555566 333322 2333478889987542211 1111234456789998776677888899999
Q ss_pred EEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEec
Q 018293 191 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYN 269 (358)
Q Consensus 191 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~ 269 (358)
++..+................++++|+|. +..+++|...|++.-|...-... ..+..... ....|.+++|-
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik-------~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIK-------SEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccc-cceeeEecCCCeEEEeeccccee-------ecccCCCcCCCcceeEEEEe
Confidence 99887655544444566778999999995 56899999999998887653311 00000111 14678999998
Q ss_pred CCCCcEEEE
Q 018293 270 PLVPNLLAT 278 (358)
Q Consensus 270 ~~~~~~l~~ 278 (358)
... .+++.
T Consensus 253 ~t~-eflvv 260 (1405)
T KOG3630|consen 253 STQ-EFLVV 260 (1405)
T ss_pred cce-eEEEE
Confidence 755 44443
No 403
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.74 E-value=0.42 Score=43.30 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=38.7
Q ss_pred eEEEEECCCCceeeeecccccc---------eeeEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCc
Q 018293 146 QVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS 201 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 201 (358)
.|.-.|+++|+....++..... ..-+....++. ..++.+.++|.+.+.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6777899999988777642221 12223334553 47889999999999999988763
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.69 E-value=0.18 Score=39.10 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred cCCCc-eEEecCCCCeEEEEE--cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293 62 REKGN-FMAVGSMEPAIEIWD--LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 138 (358)
Q Consensus 62 s~~~~-~l~~g~~dg~i~vw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 138 (358)
+.+.+ +.++-+.+-+|.-|| ..+++...+..+..- ++..+...+. .-.++...+ +++.
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl-------------rk~~~~e~~~-----PDGm~ID~e-G~L~ 226 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL-------------RKSQPFESLE-----PDGMTIDTE-GNLY 226 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEe-------------ccCCCcCCCC-----CCcceEccC-CcEE
Confidence 55654 445667777887788 555555443322210 0001111111 112223444 6678
Q ss_pred EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEE
Q 018293 139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLS 183 (358)
Q Consensus 139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (358)
++.-..++|...|..+|+.+.++.-....+++++|--.+-..+++
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 888888999999999999999998888999999996543234443
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.58 E-value=0.69 Score=43.74 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=108.9
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeeccccc--------ceeeEEEcCC---------------CCcEEEEEeCCCcEEEE
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHTD--------KVQAVAWNHH---------------SPQILLSGSFDRSVVMK 193 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~---------------~~~~l~~~~~dg~i~i~ 193 (358)
.++.++.++.|.-.|.++|+.+.++..... ..+.+.+... ....++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 677778889999999999998887753221 1122333211 12467888889999999
Q ss_pred EcccCCCccceeeecCCe-------------eeEEEcCC-CCCeEEEEec----------CCeEEEEEcccCCCCCCCCC
Q 018293 194 DARISTHSGFKWAVAADV-------------ESLAWDPH-AEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTS 249 (358)
Q Consensus 194 d~~~~~~~~~~~~~~~~i-------------~~~~~~~~-~~~~~~~~~~----------dg~i~i~d~~~~~~~~~~~~ 249 (358)
|.++++..... ...+.+ ..+.-.|- .+..+++|+. +|.|+-+|.++++.......
T Consensus 276 DA~TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 99888765321 111111 00111110 1235666643 68899999999853221100
Q ss_pred CCcc--------EEEe-ecCCceeEEEecCCCCcEEEEEe------------------CCCcEEEEecCCCCceeeEecC
Q 018293 250 QQSS--------FTLH-AHDKAVCTISYNPLVPNLLATGS------------------TDKMVKLWDLSNNQPSCIASRN 302 (358)
Q Consensus 250 ~~~~--------~~~~-~~~~~i~~i~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~ 302 (358)
..+. .... +....-...++.|.. .+++.+. ..+.|.-.|.++++..-.+...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 0000 0000 000111223444433 2322211 2345667788888754333333
Q ss_pred CCCc-------eeEEEEEcC-CCC--eEEEEEccCCeEEEEEccCCCcccc
Q 018293 303 PKAG-------AVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 303 ~~~~-------~v~~~~~~~-~~~--~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
.|.. ...-+.+.. +|+ -+++.++.+|.+.+.|.++|+.+..
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 3311 111122222 442 2588899999999999999998764
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.0061 Score=55.86 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=87.4
Q ss_pred ceEEEEEEeccCCC-CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcc
Q 018293 20 SHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID 98 (358)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~ 98 (358)
+.+-||..+.-+++ .+.+.++-..+....+--+.|.++ -++.-++..+-.++.|++..+++...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~----~~~~~~ic~~~~~~~i~lL~~~ra~~----------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPI----AVNKVYICYGLKGGEIRLLNINRALR----------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccc----ccccceeeeccCCCceeEeeechHHH-----------
Confidence 44445555554443 356666666666666677888776 45668888999999999988764221
Q ss_pred cccccccccCCceeccccccCCCcccEEEEe-----------cCCCCCcEEEEEEcCCeEEEEECC-----CCceeeeec
Q 018293 99 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-----------WNKEFRNILASASADKQVKIWDVA-----AGKCNLTLE 162 (358)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~ 162 (358)
..+.+|...+..++ .+|| +..++.++.||.++.|.+. ...++...+
T Consensus 218 -----------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 218 -----------------SLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred -----------------HHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 12234665555554 4788 6788888899988888764 224555666
Q ss_pred cccc-ceeeEEEcCCCC--------cEEEEE-eCCCcEEEEEcccCCC
Q 018293 163 HHTD-KVQAVAWNHHSP--------QILLSG-SFDRSVVMKDARISTH 200 (358)
Q Consensus 163 ~~~~-~v~~~~~~~~~~--------~~l~~~-~~dg~i~i~d~~~~~~ 200 (358)
.|+. +-.|.-++.+.. .+++++ ..+..+++|....-++
T Consensus 280 phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 280 PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 6663 322322332210 123333 3345577777554444
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.53 E-value=0.72 Score=43.25 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=53.3
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEEEECC---------CCce--e-eee--------cccccceeeEEEcCCC--Cc
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKC--N-LTL--------EHHTDKVQAVAWNHHS--PQ 179 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~--~-~~~--------~~~~~~v~~~~~~~~~--~~ 179 (358)
...|..|.++|+ +.+++..+..|.+.+.=.+ .++. . +++ ......|..+.|+|.+ +.
T Consensus 84 ~f~v~~i~~n~~-g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPT-GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCC-CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 457999999999 5677777776644433222 1111 1 111 1344678899999974 47
Q ss_pred EEEEEeCCCcEEEEEcccCCCcc
Q 018293 180 ILLSGSFDRSVVMKDARISTHSG 202 (358)
Q Consensus 180 ~l~~~~~dg~i~i~d~~~~~~~~ 202 (358)
.|++-..|+++++||+.......
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCe
Confidence 88899999999999997655433
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.51 E-value=0.32 Score=38.98 Aligned_cols=186 Identities=11% Similarity=0.088 Sum_probs=105.0
Q ss_pred cEEEEecCCCCCcEEEEEEcCC--eEEEEECCCCceeeeecccc-cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293 124 SVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 200 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 200 (358)
--..+.|..+ +.++-+.+.-| .|+.+|+.+++......-.. .--..++...+ .+..-.-.++...+||..+.+.
T Consensus 46 FTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceE
Confidence 3557777655 55777776666 79999999998765553211 12233444433 5566667789999999987665
Q ss_pred ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--cC---CceeEEEecCCCCcE
Q 018293 201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPNL 275 (358)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~i~~~~~~~~~ 275 (358)
.. .......-..++.. + ..++.+.....++++|..+. .....+.. .. ..++.+.+.. | .+
T Consensus 123 ~~-~~~y~~EGWGLt~d--g-~~Li~SDGS~~L~~~dP~~f---------~~~~~i~V~~~g~pv~~LNELE~i~-G-~I 187 (264)
T PF05096_consen 123 IG-TFPYPGEGWGLTSD--G-KRLIMSDGSSRLYFLDPETF---------KEVRTIQVTDNGRPVSNLNELEYIN-G-KI 187 (264)
T ss_dssp EE-EEE-SSS--EEEEC--S-SCEEEE-SSSEEEEE-TTT----------SEEEEEE-EETTEE---EEEEEEET-T-EE
T ss_pred EE-EEecCCcceEEEcC--C-CEEEEECCccceEEECCccc---------ceEEEEEEEECCEECCCcEeEEEEc-C-EE
Confidence 54 33444566666632 3 35666666778999998765 23333222 11 2345566652 3 33
Q ss_pred EEEEeCCCcEEEEecCCCCceeeEecC-------------CCCceeEEEEEcCCCCeEEEEEccC
Q 018293 276 LATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 276 l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~d 327 (358)
.|=.=....|...|..+++......+. ......+.|++.|....+++||-.=
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W 252 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW 252 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence 333333555667777777643222111 1135688999999888788888543
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.28 E-value=0.52 Score=39.00 Aligned_cols=160 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
..-...+..+.-++++ .+++++.....+.-||--...-..........+..+.|.|++. +.+ ....|.|++=+....
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCC
Confidence 3345678888888998 7777766555555676543333333344567899999999643 434 448888888772211
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeE
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 320 (358)
.... .+....+....-.+..++|.+++ ...++|+ .|.+ +.....++.-.... ...-...+..+.|.++.+ -
T Consensus 218 ~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g 289 (302)
T PF14870_consen 218 GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G 289 (302)
T ss_dssp EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence 0000 00011111122347889999876 5555554 5544 34555555222111 223345688888877655 3
Q ss_pred EEEEccCCeEEEE
Q 018293 321 LAIGGSKGKLEIW 333 (358)
Q Consensus 321 l~~~~~dg~i~vw 333 (358)
++ -+.+|.|.-|
T Consensus 290 f~-lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FV-LGQDGVLLRY 301 (302)
T ss_dssp EE-E-STTEEEEE
T ss_pred EE-ECCCcEEEEe
Confidence 55 4678887655
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.22 E-value=1.1 Score=42.33 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=105.3
Q ss_pred cEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCC--------------CcEEEEEcccCC
Q 018293 136 NILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------------RSVVMKDARIST 199 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~ 199 (358)
..++++. .+.+++.-+..-+. ++++. -......+++.+.. ..+.+.+.. ..++++|-++.+
T Consensus 685 d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 685 DSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred ceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 3455554 35677776654322 23333 23445667777643 333333321 135556655544
Q ss_pred Cccce-e---eecCCeeeEEEcCCCCCeEEEEec----------CCeEEEEEcccCCCCCCCCCCCccEEEeec--CCce
Q 018293 200 HSGFK-W---AVAADVESLAWDPHAEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAV 263 (358)
Q Consensus 200 ~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i 263 (358)
..... . .....+.++.|..+.+.++++|+. .|.|.+|..... ..+.....+ .+.+
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~---------~~L~~v~e~~v~Gav 832 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL---------NSLELVAETVVKGAV 832 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC---------Cceeeeeeeeeccce
Confidence 32211 1 112245566688776778888753 578888888773 222222222 3455
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
.++..-. | +++|. -...|++|+..+.+ .+..-..+..++..+...-.|.. ++.|..-+.+.+...+..+
T Consensus 833 ~aL~~fn-g-kllA~--In~~vrLye~t~~~--eLr~e~~~~~~~~aL~l~v~gde-I~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 833 YALVEFN-G-KLLAG--INQSVRLYEWTTER--ELRIECNISNPIIALDLQVKGDE-IAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred eehhhhC-C-eEEEe--cCcEEEEEEccccc--eehhhhcccCCeEEEEEEecCcE-EEEeeccceEEEEEEeccC
Confidence 5555443 3 55543 35689999998886 34445566778888888888885 7778887877776555444
No 411
>PRK10115 protease 2; Provisional
Probab=96.13 E-value=1.2 Score=41.88 Aligned_cols=199 Identities=7% Similarity=0.012 Sum_probs=95.8
Q ss_pred ccEEEEecCCCCCcEEEEEEcCC----eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEE
Q 018293 123 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMK 193 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~ 193 (358)
-.+..+.|+|++..+.++.+.+| .+++.|+.+++.+...-.... ..++|.+++..++++...+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45778899999553334433333 588999988864322211111 4599999985555555432 357777
Q ss_pred EcccCC--CccceeeecCCeeeEEEcC-CCCCeEEEEe--cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293 194 DARIST--HSGFKWAVAADVESLAWDP-HAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268 (358)
Q Consensus 194 d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 268 (358)
++.++. .............-..+.+ ++..+++... .++.+.+++...... .....+.........+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-------EPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-------CceEEEECCCCCEEEEE-
Confidence 777663 2221222222233223333 4443343322 245788888543211 11111211112222222
Q ss_pred cCCCCcEEEEEeC-CCc--EEEEecCC-CCceeeEecCC-CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 269 NPLVPNLLATGST-DKM--VKLWDLSN-NQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 269 ~~~~~~~l~~~~~-dg~--i~i~d~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
+..+ .+++.... ... |...++.. .+...+ +.. ....|..+.+.. .+++++...+|.-+++-+.
T Consensus 277 ~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l--~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEEL--IPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEE--ECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence 2222 33332222 122 43444442 222122 222 234688888873 3577777778876665544
No 412
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.13 E-value=0.81 Score=39.76 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC---CCCCcEEEE
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNILAS 140 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s 140 (358)
+...+++|+.+|.++||+-...+......++ ...-+.+|..++.- +......++
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lll-----------------------E~~l~~PILqv~~G~F~s~~~~~~La 92 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLL-----------------------ETQLKDPILQVECGKFVSGSEDLQLA 92 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEE-----------------------EEecCCcEEEEEeccccCCCCcceEE
Confidence 4678999999999999998543322111111 11234567766542 221223333
Q ss_pred EEcCCeEEEEECCC--Cc-------eeeeecccc--cceeeEEEcC----CCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293 141 ASADKQVKIWDVAA--GK-------CNLTLEHHT--DKVQAVAWNH----HSPQILLSGSFDRSVVMKDARISTHSGFKW 205 (358)
Q Consensus 141 ~~~dg~v~iwd~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 205 (358)
.-.-..+.+|.+.. +. .+..+..|. .....++.-| .+..++.+-+.||.+.+++-+........
T Consensus 93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l- 171 (418)
T PF14727_consen 93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL- 171 (418)
T ss_pred EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc-
Confidence 35567788887731 11 112222222 2233344433 22367888899999999997654322211
Q ss_pred eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
...--...+.+.+ ....|++++.+..+..|....
T Consensus 172 p~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 172 PDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CCCCCCcCeEEee-cCCEEEEecCceeEEEecHHH
Confidence 1122234466667 345788888888999888754
No 413
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.52 Score=43.09 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=89.3
Q ss_pred ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee--e--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEE-ccc
Q 018293 123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARI 197 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~ 197 (358)
..+-.+.|+.+ . .|++...||++++|++.. +.+.. . ......|..+.+..+| ++.-..+|.+.+-+ ...
T Consensus 84 ~~lI~mgWs~~-e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 84 GELIGMGWSDD-E-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEE 157 (829)
T ss_pred CCeeeecccCC-c-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCc
Confidence 37889999987 4 677889999999999753 22222 1 2223446666666666 55555566665543 222
Q ss_pred CCCccceee---ecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293 198 STHSGFKWA---VAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 272 (358)
Q Consensus 198 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 272 (358)
..... ... ..-+..|-+..+++......-.-+- -..++-..... .....+....+.+..+..+|+.
T Consensus 158 ~~~~~-~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--------~q~~~~~~~~~~~~ki~VS~n~ 228 (829)
T KOG2280|consen 158 PKLRK-MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--------VQLHALSWPNSSVVKISVSPNR 228 (829)
T ss_pred chhhh-CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--------ccccccCCCCceEEEEEEcCCc
Confidence 11111 111 1111122222221111111100110 01112222111 1122222223567889999987
Q ss_pred CcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293 273 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 317 (358)
.+|+--..+|.|.+-+....+..+-.....|..+ ..++|..+.
T Consensus 229 -~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd 271 (829)
T KOG2280|consen 229 -RFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND 271 (829)
T ss_pred -ceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC
Confidence 8899889999999988877664444433333222 245554443
No 414
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.0027 Score=54.06 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=93.1
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
-+.+.-++.++.+..+..||-....... ..-++....++|..++...++.+
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~~le-----------------------------~n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQVILE-----------------------------LNPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcceecc-----------------------------cCCchhHhhhhhccccchhhhhh
Confidence 4555558888888888888864211111 12345667888988877777778
Q ss_pred EcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293 142 SADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 220 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (358)
-..+.+.+||+.+... +++. +....-.-+.|++.. ..++.+...|.+.+++..+.+.......|...+++++|.+.+
T Consensus 94 ek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 8889999999976532 2221 112222237888887 678888899999999998887777566688899999998843
Q ss_pred CCeEEEEecC
Q 018293 221 EHSFVVSLED 230 (358)
Q Consensus 221 ~~~~~~~~~d 230 (358)
+.+.++.|
T Consensus 172 --~vil~dcd 179 (615)
T KOG2247|consen 172 --YVILCDCD 179 (615)
T ss_pred --eeeecCcH
Confidence 44444433
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.97 E-value=0.39 Score=41.82 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=88.6
Q ss_pred EEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc
Q 018293 180 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 253 (358)
Q Consensus 180 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 253 (358)
++..++....++-.|++.++.+. .+.....+ -+.|.|.. ...-++|-.+..|.-.|.|-.. ..+
T Consensus 482 i~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------NKi 551 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------NKI 551 (776)
T ss_pred EEecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------Cce
Confidence 34445566677777888777665 44444555 56777642 1234556667777666776542 111
Q ss_pred EEEee----cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293 254 FTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 329 (358)
Q Consensus 254 ~~~~~----~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 329 (358)
..... ......+..-... .++++++..|-|++||.-..+ ....+++....|..+..+.+|.++|++|- ..
T Consensus 552 ~v~esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTCk--~y 625 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATCK--NY 625 (776)
T ss_pred eeeeehhccccccccccccccC--ceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEeec--ce
Confidence 11111 1122334433333 499999999999999975544 34456666778999999999999888764 57
Q ss_pred EEEEEcc
Q 018293 330 LEIWDTL 336 (358)
Q Consensus 330 i~vw~~~ 336 (358)
+.+-|+.
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 8887775
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.93 E-value=0.67 Score=37.17 Aligned_cols=176 Identities=12% Similarity=0.104 Sum_probs=95.1
Q ss_pred cCCCceEEecCCCC--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293 62 REKGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 139 (358)
Q Consensus 62 s~~~~~l~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 139 (358)
..+|.++-+.+.-| .|+.+|+.+++......+.. . -....|+-+ . ..+..
T Consensus 53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~---------------------~--~FgEGit~~---~--d~l~q 104 (264)
T PF05096_consen 53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP---------------------R--YFGEGITIL---G--DKLYQ 104 (264)
T ss_dssp EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT---------------------T----EEEEEEE---T--TEEEE
T ss_pred cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc---------------------c--ccceeEEEE---C--CEEEE
Confidence 45777777777666 78899998776544322211 0 011223222 2 33455
Q ss_pred EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-----cCCeeeE
Q 018293 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-----AADVESL 214 (358)
Q Consensus 140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~ 214 (358)
-.-.++...+||.++.+.+.++.- ...=..++ .++ ..|+.+.....+.++|..+.+......-. -..++.+
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccceEEEEEec-CCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 556778899999999988888863 34556777 445 45666766788999998765543322111 1234455
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---------------ecCCceeEEEecCCCCcEEEEE
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------------AHDKAVCTISYNPLVPNLLATG 279 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~~i~~~~~~~~~l~~~ 279 (358)
.|.. +.+.|=.-....|...|..++ .....+. ....-.+.|++.|..+.+++||
T Consensus 181 E~i~--G~IyANVW~td~I~~Idp~tG---------~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYIN--GKIYANVWQTDRIVRIDPETG---------KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEET--TEEEEEETTSSEEEEEETTT----------BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEc--CEEEEEeCCCCeEEEEeCCCC---------eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5542 222222333444555555554 2222111 1134579999999886777776
Q ss_pred e
Q 018293 280 S 280 (358)
Q Consensus 280 ~ 280 (358)
=
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 3
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.92 E-value=0.048 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=27.1
Q ss_pred ccEEEEecCCCCC--cEEEEEEcCCeEEEEECCC
Q 018293 123 DSVLGLAWNKEFR--NILASASADKQVKIWDVAA 154 (358)
Q Consensus 123 ~~v~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~ 154 (358)
++|.++.|+|... .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998755 6888888889999999985
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.89 E-value=0.74 Score=37.28 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=86.7
Q ss_pred cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE-cccCCCcc
Q 018293 124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTHSG 202 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~ 202 (358)
.+...++++++..+.+....++.-.+|-...+....... ....+..-.|++++ ...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCccee
Confidence 688999999955444444233334444333333333322 22367888999997 6666666666666663 23332221
Q ss_pred ce--eeec-CCeeeEEEcCCCCCeEEEE--ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293 203 FK--WAVA-ADVESLAWDPHAEHSFVVS--LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277 (358)
Q Consensus 203 ~~--~~~~-~~i~~~~~~~~~~~~~~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 277 (358)
.. .... ..|..+.++|++.+..+.. ..++.|.+--+........................+..+.|.+++ .+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence 11 1111 2899999999877655554 235777777665432210000011222222335678999999988 5655
Q ss_pred EEeCCC
Q 018293 278 TGSTDK 283 (358)
Q Consensus 278 ~~~~dg 283 (358)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 554433
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.73 E-value=0.65 Score=42.41 Aligned_cols=120 Identities=12% Similarity=0.098 Sum_probs=69.1
Q ss_pred ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEc--CCCCCeEEEEecCCeEEEEEcccCCC
Q 018293 167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKS 243 (358)
Q Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~ 243 (358)
.+.-+.-+.-+ ...++-+....+.|||.+...... ........|..+.|. |++. .+++-+-...|.+|--.....
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhh
Confidence 33444444444 444444555679999998776322 122346789999985 4444 555555677888876532221
Q ss_pred CCCCCCCCccEE--EeecC-CceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293 244 DPDSTSQQSSFT--LHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 244 ~~~~~~~~~~~~--~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
....+...++.. +..++ .+|.+..|.++| . +++|+ ++.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence 111122233333 33444 679999999987 4 44444 4568888753
No 420
>PRK10115 protease 2; Provisional
Probab=95.67 E-value=2 Score=40.56 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=112.1
Q ss_pred cccCCCceEEecCC-----CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293 60 KDREKGNFMAVGSM-----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 134 (358)
Q Consensus 60 ~~s~~~~~l~~g~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 134 (358)
.+||||++|+.+.. .-.|++.|+.++..+.. .+. .. -..++|.+++
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--------------------------~i~-~~--~~~~~w~~D~ 183 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--------------------------LLD-NV--EPSFVWANDS 183 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--------------------------ccc-Cc--ceEEEEeeCC
Confidence 45899998886532 23688888875542211 000 11 1458999996
Q ss_pred CcEEEEEEcC-----CeEEEEECCCC--ceeeeeccccccee-eEEEcCCCCcEEEEEe---CCCcEEEEEcccCCC-cc
Q 018293 135 RNILASASAD-----KQVKIWDVAAG--KCNLTLEHHTDKVQ-AVAWNHHSPQILLSGS---FDRSVVMKDARISTH-SG 202 (358)
Q Consensus 135 ~~~l~s~~~d-----g~v~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~ 202 (358)
..++++...+ ..|..+++.++ +-...+........ ....+.++ .+++..+ .++.+.+++...... ..
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPF 262 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCce
Confidence 5555554432 36788888877 33333433223233 23334366 4444433 245788888533211 11
Q ss_pred ceeeecCCe-eeEEEcCCCCCeEEEEecC-C--eEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEE
Q 018293 203 FKWAVAADV-ESLAWDPHAEHSFVVSLED-G--TIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLL 276 (358)
Q Consensus 203 ~~~~~~~~i-~~~~~~~~~~~~~~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l 276 (358)
........+ ..+. +. +..+++....+ . .|...++... .....+..+ ...+..+.+.. ..++
T Consensus 263 ~~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~~~~~i~~~~~~~--~~l~ 329 (686)
T PRK10115 263 VFLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPRENIMLEGFTLFT--DWLV 329 (686)
T ss_pred EEEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCCCCCEEEEEEEEC--CEEE
Confidence 122222222 2222 22 23233333221 2 3333333321 122333334 23678888873 3677
Q ss_pred EEEeCCCcEEEEecC--CCCceeeEecC-CCCceeEEEEEc--CCCCeEEEEEcc---CCeEEEEEccCCC
Q 018293 277 ATGSTDKMVKLWDLS--NNQPSCIASRN-PKAGAVFSVAFS--EDSPFVLAIGGS---KGKLEIWDTLSDA 339 (358)
Q Consensus 277 ~~~~~dg~i~i~d~~--~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~---dg~i~vw~~~~~~ 339 (358)
++...+|.-+++-+. +.. ...+. .....+..+.++ +++..++++.+. -+.+..+|+.+++
T Consensus 330 ~~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 330 VEERQRGLTSLRQINRKTRE---VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEeCCEEEEEEEcCCCCc---eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 777778775555443 332 22222 112223333444 343334444332 2578888887654
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=95.42 E-value=1.9 Score=38.77 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=45.8
Q ss_pred CcEEEEEEcCC---eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--eeee
Q 018293 135 RNILASASADK---QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAV 207 (358)
Q Consensus 135 ~~~l~s~~~dg---~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~ 207 (358)
+.+.+.|+.++ .+..||.++.+-.. .+....... +++ .-++ .+.+.| |.+.+||.++.+-... ....
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~-~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGR-RLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECC-EEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 45667776553 47788887654322 111111111 121 1233 555555 3567788765532110 1111
Q ss_pred cCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccC
Q 018293 208 AADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTA 241 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~ 241 (358)
......+.+ ++.++++|+.+ ..+..||..+.
T Consensus 437 r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 RDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ccccEEEEE---CCEEEEECCcCCCcccceEEEEECCCC
Confidence 112222222 34577777654 34667776643
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.42 E-value=0.96 Score=35.31 Aligned_cols=151 Identities=12% Similarity=0.134 Sum_probs=85.1
Q ss_pred cceeeEEEcCCCCcEEEEEeCC---------CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293 166 DKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 236 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~ 236 (358)
...+.-..+|+| ++++-.-.| |.++.|-. +..+...+..-.--+.++|+.+...+.++-+.+-.|.-|
T Consensus 109 nR~NDgkvdP~G-ryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDG-RYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCC-ceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 445566678998 553322222 33444432 222222333334456789998666666666777788777
Q ss_pred E--cccCCCCCCCCCCCccEEEeec----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEE
Q 018293 237 D--IRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 310 (358)
Q Consensus 237 d--~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~ 310 (358)
| ..++.... .+.++.+... ....-.+++..+| ++.++.-..++|...|..+++.. .++.-....|++
T Consensus 186 dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L--~eiklPt~qits 258 (310)
T KOG4499|consen 186 DYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKIL--LEIKLPTPQITS 258 (310)
T ss_pred ecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcEE--EEEEcCCCceEE
Confidence 7 44443211 1223333221 1112344555566 77777777889999999999954 444444778999
Q ss_pred EEEcCCC-CeEEEEEcc
Q 018293 311 VAFSEDS-PFVLAIGGS 326 (358)
Q Consensus 311 ~~~~~~~-~~~l~~~~~ 326 (358)
++|-..+ ..+++++..
T Consensus 259 ccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 259 CCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEecCCCccEEEEEehh
Confidence 9997542 324455443
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.40 E-value=0.095 Score=28.56 Aligned_cols=33 Identities=36% Similarity=0.448 Sum_probs=26.4
Q ss_pred ceeEEEEEcCCCC--eEEEEEccCCeEEEEEccCC
Q 018293 306 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 306 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~ 338 (358)
+.+.++.|+|+.. -+|+..-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999997543 47888888899999999863
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.39 E-value=0.56 Score=38.80 Aligned_cols=151 Identities=10% Similarity=0.098 Sum_probs=72.8
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc-ccCC
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-RIST 199 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~ 199 (358)
-.+.+..+.-+++ +.+++++..-....-||.-...-...-+.....|..|.|.|++ .+.+ ....|.|++=+. ...+
T Consensus 143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCcc
Confidence 3467888888888 5677777665566677754322222223346789999999997 5544 448888888771 1111
Q ss_pred C----ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCC
Q 018293 200 H----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV 272 (358)
Q Consensus 200 ~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~ 272 (358)
. ..........+..++|.++ ....++ +..|.+ +.....+ +...... .-...+..+.|.+..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~-gg~G~l-~~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPP-NEIWAV-GGSGTL-LVSTDGG---------KTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSS-S-EEEE-ESTT-E-EEESSTT---------SS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccccccCCcccCceeeEEEEecCC-CCEEEE-eCCccE-EEeCCCC---------ccceECccccCCCCceEEEEEcCCC
Confidence 1 0101122334788999984 334554 455544 3344443 2233322 123457788887654
Q ss_pred CcEEEEEeCCCcEEEE
Q 018293 273 PNLLATGSTDKMVKLW 288 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~ 288 (358)
+-++. +.+|.|--|
T Consensus 288 -~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 288 -KGFVL-GQDGVLLRY 301 (302)
T ss_dssp -EEEEE--STTEEEEE
T ss_pred -ceEEE-CCCcEEEEe
Confidence 44444 567876544
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.36 E-value=1.2 Score=36.29 Aligned_cols=220 Identities=12% Similarity=0.129 Sum_probs=118.6
Q ss_pred ccEEEEecCCCCCcEEEEEEcCCeEEEEECC------CC-ceeeeecc-----cccceeeEEEcCCC-----------Cc
Q 018293 123 DSVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQ 179 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~ 179 (358)
..-+.|+++|. +.+-++....+...+||.. .. .++-.+.. .....+.+.|+... ..
T Consensus 23 ~N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 34678999998 5577777777899999986 11 22333331 23457778877432 12
Q ss_pred EEEEEeCCCcEEEEEcccCCC---cc-ceee--ecCC-eeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCC--C-
Q 018293 180 ILLSGSFDRSVVMKDARISTH---SG-FKWA--VAAD-VESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPD--S- 247 (358)
Q Consensus 180 ~l~~~~~dg~i~i~d~~~~~~---~~-~~~~--~~~~-i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~--~- 247 (358)
.++.+++||+|.-|...-... .. .... .... -..+++... +..+.++--..++|.+||-.-...... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367889999999998643332 11 1111 1122 233444432 344555556789999998764421100 0
Q ss_pred ----CCCCccEEEeec--CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC------
Q 018293 248 ----TSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE------ 315 (358)
Q Consensus 248 ----~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~------ 315 (358)
+..-..+.+..- .-.|+-..-.++. +.=+.|..-|.|-+||....- .......+.-..-+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCC
Confidence 000000000000 0111212222222 222334445789999986542 12222233334456677755
Q ss_pred CCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293 316 DSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346 (358)
Q Consensus 316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 346 (358)
.|. +|+---.||+|..||..+++-+..+..
T Consensus 260 sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 260 SGA-LLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCC-eEEeecCCceeEEecCCCCceeeeecC
Confidence 455 677666899999999998886654443
No 426
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.32 E-value=1.2 Score=35.99 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=84.2
Q ss_pred ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEE-cccCCCCC
Q 018293 167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP 245 (358)
Q Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~ 245 (358)
.+.+.++++++..+.+....++.-.+|-...+....... ....+..-.|+++ +...++...+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~--- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT--- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCc---
Confidence 688899999994444444334444444444333332221 3347788899996 44555555555556653 22221
Q ss_pred CCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEe--CCCcEEEEecCC---CCce----eeEecCCCCceeEEEEEc
Q 018293 246 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPS----CIASRNPKAGAVFSVAFS 314 (358)
Q Consensus 246 ~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~--~dg~i~i~d~~~---~~~~----~~~~~~~~~~~v~~~~~~ 314 (358)
......... ...|..+.++|||.+..+... .++.|.+--+.. +.+. ...........+..+.|.
T Consensus 100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111111111 128999999999955444442 346676654432 2011 111122234678999999
Q ss_pred CCCCeEEEEEccCCeEEE
Q 018293 315 EDSPFVLAIGGSKGKLEI 332 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~v 332 (358)
+++..+++....++.+..
T Consensus 175 ~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCEEEEEeCCCCCceeE
Confidence 999854444444443444
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.19 E-value=2.7 Score=39.11 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=74.6
Q ss_pred cEEEEecCCC-CCcEEEEEEcCCeEEEEECCC-------C-------------ceeeeecccccceeeEEEc--CCCCcE
Q 018293 124 SVLGLAWNKE-FRNILASASADKQVKIWDVAA-------G-------------KCNLTLEHHTDKVQAVAWN--HHSPQI 180 (358)
Q Consensus 124 ~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~~ 180 (358)
.|+.|....- +...|+.|..||.|.+|.+++ . ++...+. ....+++++++ ... ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence 4555544322 245899999999999997631 0 0111222 34578899998 555 78
Q ss_pred EEEEeCCCcEEEEEcccC--CCc-cceeeecCCeeeEEEcCCC--CC---eEEEEecCCeEEEEEcc
Q 018293 181 LLSGSFDRSVVMKDARIS--THS-GFKWAVAADVESLAWDPHA--EH---SFVVSLEDGTIKGFDIR 239 (358)
Q Consensus 181 l~~~~~dg~i~i~d~~~~--~~~-~~~~~~~~~i~~~~~~~~~--~~---~~~~~~~dg~i~i~d~~ 239 (358)
+|+++....|.||-.... +.. .....+..-|.+|+|-++. +. .+++++-.|.+.+|++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888888888888765542 111 1122355678899997754 22 67788899999998883
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.07 E-value=1 Score=41.14 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=67.7
Q ss_pred cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEc--CCCCcEEEEEeCCCcEEEEEccc---
Q 018293 124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWN--HHSPQILLSGSFDRSVVMKDARI--- 197 (358)
Q Consensus 124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~--- 197 (358)
.+.-+.-+.. ++..+.-+....+.|||.+.+.....-. ...+.|.++.|. |++ +.+++.+....|.++.-..
T Consensus 31 ~~~li~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence 3444444444 3333333445679999998876433222 346889999995 567 7788888888998886421
Q ss_pred --CCC----ccc--eee-ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293 198 --STH----SGF--KWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 198 --~~~----~~~--~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
..+ +.. ... ...+|.+..|.++| .+++|+ ++.+.++|-.-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDKWL 157 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECCCc
Confidence 111 000 111 23678899999854 455543 46788887643
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.05 E-value=1.4 Score=35.29 Aligned_cols=198 Identities=11% Similarity=0.068 Sum_probs=116.4
Q ss_pred ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293 123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 202 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 202 (358)
..-..++-.|+ +..-+++...+.|--.|..+|+....--+.......+..-|++. .-++-+.. .|.-.|-++.+...
T Consensus 62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEE
Confidence 44567788888 55778888888899999999987665555556667788889884 33332222 55556665544333
Q ss_pred cee---eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEE
Q 018293 203 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLAT 278 (358)
Q Consensus 203 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~ 278 (358)
... ..........|++.+ ++.+++. .|.---.|... ..+..+.. ....-..|+..|+| ..-++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~----------~~i~vfpaPqG~gpyGi~atpdG-svwya 205 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWG-NLWFTGQ-IGAYGRLDPAR----------NVISVFPAPQGGGPYGICATPDG-SVWYA 205 (353)
T ss_pred eecccccCCCcccceeeCCCc-cEEEeec-cccceecCccc----------CceeeeccCCCCCCcceEECCCC-cEEEE
Confidence 222 123457778898854 4666664 22111111111 11122211 22345788999998 56666
Q ss_pred EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 279 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 279 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.-.+..|...|..++....+-.-......-..+--+|.|+ +-++-...+.+.-||-.+
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc
Confidence 5666777777877665333322222233445566667777 566666667777777654
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.99 E-value=0.53 Score=41.05 Aligned_cols=139 Identities=16% Similarity=0.094 Sum_probs=86.6
Q ss_pred EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC------cEEEEEeCCCcEEEEEcccCCCccceeeec---
Q 018293 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKWAVA--- 208 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 208 (358)
+..|..-..+.--|++.|+.+.....|..- -+.|.|... ..-++|-.+..|.-.|.+............
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 334555566777788899998888877654 467776531 123455567777777776544222122222
Q ss_pred --CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293 209 --ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 286 (358)
Q Consensus 209 --~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 286 (358)
....+..-. ...++++++..|-|++||.-.. .....+++-...|..+..+.+| .++++.+ ...+.
T Consensus 561 tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~G-k~ilaTC-k~yll 627 (776)
T COG5167 561 TKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANG-KHILATC-KNYLL 627 (776)
T ss_pred ccccccccccc--cCceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCC-cEEEEee-cceEE
Confidence 223333322 2348999999999999997654 3344556667789999999998 4444444 34666
Q ss_pred EEecC
Q 018293 287 LWDLS 291 (358)
Q Consensus 287 i~d~~ 291 (358)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77764
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.90 E-value=3.7 Score=39.20 Aligned_cols=282 Identities=13% Similarity=0.160 Sum_probs=138.7
Q ss_pred EEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCc
Q 018293 9 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV 88 (358)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~ 88 (358)
++++|-.++. .+-+.-..+. .+..|.....+.+|-.+-... |-.|..+|.++..||.+.-|-++.....
T Consensus 550 ~~aVG~Ws~~----~~~l~~~pd~---~~~~~~~l~~~~iPRSIl~~~----~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 550 LLAVGLWSDI----SMILTFLPDL---ILITHEQLSGEIIPRSILLTT----FEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred EEEEEeecce----EEEEEECCCc---ceeeeeccCCCccchheeeEE----eeccceEEEEEcCCceEEEEEEEcccce
Confidence 6777777652 1222222222 344444455555555443322 2456889999999999987776543221
Q ss_pred CceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccce
Q 018293 89 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV 168 (358)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 168 (358)
... .+...-...++.--.|+..+++.+++++ |.-..+|. .+++....--..+.--
T Consensus 619 lsd-----------------------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~-~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 619 LSD-----------------------RKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYS-SNGKLVYSPLSLKEVN 673 (1096)
T ss_pred Ecc-----------------------ccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEe-cCCcEEEeccchHHhh
Confidence 100 0000012345555556655555565554 44445554 2333322211111111
Q ss_pred eeEEEcCC-CCcEEEEEeCCCcEEEEEcccCCCccc-eeeecCCeeeEEEcCCCCCeEEEEecC--------------Ce
Q 018293 169 QAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLED--------------GT 232 (358)
Q Consensus 169 ~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d--------------g~ 232 (358)
..+.|+.+ .+..++++. .+.+++..+..-+.... ..........+++.+ ....+.+.+.. ..
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEE
Confidence 11223322 223344444 55677766654333221 233445667777776 23333333221 13
Q ss_pred EEEEEcccCCCCCCCCCCCccEEEeecC-------CceeEEEecCCCCcEEEEEeC----------CCcEEEEecCC-CC
Q 018293 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGST----------DKMVKLWDLSN-NQ 294 (358)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~ 294 (358)
++++|-++- ..+..|. ..+.++.|..|.+.++++|+. .|.|.+|.+.. ++
T Consensus 752 l~vlD~nTf------------~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 752 LRVLDQNTF------------EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred EEEecCCce------------eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 555555443 2222221 235556688775477777753 47788888877 33
Q ss_pred ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
...+.+. .-.+.+.++..- +|+ ++| +-+..|++|++.+++.++..-
T Consensus 820 L~~v~e~-~v~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~~eLr~e~ 865 (1096)
T KOG1897|consen 820 LELVAET-VVKGAVYALVEF-NGK-LLA--GINQSVRLYEWTTERELRIEC 865 (1096)
T ss_pred eeeeeee-eeccceeehhhh-CCe-EEE--ecCcEEEEEEccccceehhhh
Confidence 2222222 223445554332 455 454 456789999999986665433
No 432
>PLN02153 epithiospecifier protein
Probab=94.83 E-value=2.2 Score=36.36 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=27.9
Q ss_pred CcEEEEecCCCCceeeEec---CCCCceeEEEEEcCCCCeEEEEEccC--------------CeEEEEEccCC
Q 018293 283 KMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSD 338 (358)
Q Consensus 283 g~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~vw~~~~~ 338 (358)
..+.+||..+.+...+... ..... ..+++. -+++ +++.|+.. +.+..||+.+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~-~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARS-VFAHAV-VGKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcc-eeeeEE-ECCE-EEEECcccCCccccccccccccccEEEEEcCcc
Confidence 4588999988775433221 11111 122222 2344 77778752 25778887653
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.62 E-value=0.031 Score=51.50 Aligned_cols=185 Identities=12% Similarity=0.156 Sum_probs=105.7
Q ss_pred CCeEEEEECCCCc-eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc--CCCcc-----ceeeecCCeeeEE
Q 018293 144 DKQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSG-----FKWAVAADVESLA 215 (358)
Q Consensus 144 dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~~~i~~~~ 215 (358)
.+.+++-+..+.- .-..+++..+.+-.+.|-......+. -.-|.+.+||+.. ++... ........+..+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4557776655432 11234566777888888543222222 3457788998763 22211 1112344566777
Q ss_pred EcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE-----------ecCCCCcEEEEEeCC
Q 018293 216 WDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-----------YNPLVPNLLATGSTD 282 (358)
Q Consensus 216 ~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-----------~~~~~~~~l~~~~~d 282 (358)
|.|. +.-++..+..++.+++....... . ..+.+|...+..++ .+||| ..+++.+.|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--------~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~d 256 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRAL--------R--SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISD 256 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHH--------H--HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecC
Confidence 7764 23456667778888887776541 1 22233554444332 68888 899999999
Q ss_pred CcEEEEecCC---CCceeeEecCCCC-ceeEEEEEcCC---------CCeEEEEEccCCeEEEEEccCCCcc
Q 018293 283 KMVKLWDLSN---NQPSCIASRNPKA-GAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLSDAGI 341 (358)
Q Consensus 283 g~i~i~d~~~---~~~~~~~~~~~~~-~~v~~~~~~~~---------~~~~l~~~~~dg~i~vw~~~~~~~~ 341 (358)
|.++.|.+.- ....+......|. .+-.|.-++.. -.+++-+...+..+++|.....+++
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9988887642 1223555666665 33333333321 1223333445567999999888877
No 434
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.52 E-value=4.6 Score=38.62 Aligned_cols=185 Identities=15% Similarity=0.060 Sum_probs=96.2
Q ss_pred ccCCCcEEEEEEecCCCceEEEEEEeccCC---------CCCceEeeceeec--C----------------Ccccceeee
Q 018293 3 INPNDAVIVCARNEDDVSHLEVYILEESDG---------GDPNLYVHHHIII--P----------------AFPLCMAWL 55 (358)
Q Consensus 3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~----------------~~~~~~~~~ 55 (358)
+.++|..++++..+.-...+++|-....-+ ..|.+...|.... . .....++++
T Consensus 110 ~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~il 189 (753)
T PF11635_consen 110 PSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEIL 189 (753)
T ss_pred ecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEe
Confidence 456777777775653234555553222211 2255665553222 0 122367777
Q ss_pred cCCccccCCCceEEecCC----CCeEEEEEcccccCcCceeecCCccccccc-ccccCCceeccccccCCCcccEEEEec
Q 018293 56 DCPLKDREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKK-KKSKKGKKSSIKYKKGSHTDSVLGLAW 130 (358)
Q Consensus 56 ~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~ 130 (358)
+..+.-+.....|++.+. ...|.-|.+......-. ..+......+.. ...+..........+ ...+.|.++..
T Consensus 190 s~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh-~~F~ql~s~~~~~~~~~~~~~l~~~~~i-~~~~~V~si~~ 267 (753)
T PF11635_consen 190 SPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLH-PAFQQLGSKKNSSSEPPPTYRLRRLDDI-TLNKRVVSITS 267 (753)
T ss_pred ccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccc-hhhhhcCCCCcCCCCCCCceeEEEeccc-ccCCeEEEEEe
Confidence 644433333445555442 34799999876432111 111111100000 001111111111111 23456888887
Q ss_pred CCCCCcEEEEEEcCCeEEEEECCCCceeeee----cc---------------cccceeeEEEcCCCCcEEEEEeCCCcEE
Q 018293 131 NKEFRNILASASADKQVKIWDVAAGKCNLTL----EH---------------HTDKVQAVAWNHHSPQILLSGSFDRSVV 191 (358)
Q Consensus 131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 191 (358)
..- +..++....||+|.++|-.+.+.+... .. ....+..++|+|.+ ..++.-..+|.+.
T Consensus 268 ~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 268 PEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLVQIDEDGKTK 345 (753)
T ss_pred ccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEEEEecCCCce
Confidence 766 558999999999999998877554333 10 11133457899998 7788888888865
No 435
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=1.7 Score=42.54 Aligned_cols=167 Identities=12% Similarity=0.148 Sum_probs=95.7
Q ss_pred cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE--------cCCCCCeEEEEecCCeEEE
Q 018293 164 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKG 235 (358)
Q Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~dg~i~i 235 (358)
|...-..+-+.|.=++ +-.+-|+.+.+|+.+++.......+....|..+.. .|.=.++++.++ --.|.+
T Consensus 77 ~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVI 153 (1311)
T ss_pred Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEE
Confidence 3333344555554423 33456899999999986665555555556655543 222233444443 344666
Q ss_pred EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC----CC---C---c----------
Q 018293 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS----NN---Q---P---------- 295 (358)
Q Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~----~~---~---~---------- 295 (358)
+-+.................+......|+++....+| +.+++|- ||. +|.+. .+ + .
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~ 229 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-RIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSS 229 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCC-cEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHH
Confidence 6554433222111111224444556678999977776 6766655 553 44431 10 0 0
Q ss_pred --eeeEecC-CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 296 --SCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 296 --~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
..+..+. .+..+|..+....... ++.+-+..|+|.+|++...
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCC
Confidence 0112223 5667899999987776 7888999999999999873
No 436
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.41 E-value=3 Score=35.99 Aligned_cols=148 Identities=7% Similarity=0.030 Sum_probs=71.8
Q ss_pred ceeeEEEcCCCCcEEEEEe-----------CCC-cEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEEecC
Q 018293 167 KVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLED 230 (358)
Q Consensus 167 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 230 (358)
....|+|.++| +++++-. ..+ .|.+++-..+.-. ............+++.++ + +++ +...
T Consensus 15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV-~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G-VYV-ATPP 90 (367)
T ss_pred CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C-EEE-eCCC
Confidence 45678888888 6555542 223 6666654332211 111122334678888874 3 444 4444
Q ss_pred CeEEEEEcccCCCCCCCCCCCccE-EEee----cCCceeEEEecCCCCcEEEEEeCC-------------------CcEE
Q 018293 231 GTIKGFDIRTAKSDPDSTSQQSSF-TLHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMVK 286 (358)
Q Consensus 231 g~i~i~d~~~~~~~~~~~~~~~~~-~~~~----~~~~i~~i~~~~~~~~~l~~~~~d-------------------g~i~ 286 (358)
...++.|........ . ..+.+. .+.. +......++|.|+| .+.++-+.. |.|.
T Consensus 91 ~i~~~~d~~gdg~ad-~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKAD-G-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCC-C-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 333333443221100 0 001111 1211 13447789999998 554443311 3455
Q ss_pred EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293 287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 325 (358)
Q Consensus 287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 325 (358)
-++..+.+.. + ...++ .....++|+++|+ ++++-.
T Consensus 168 r~~pdg~~~e-~-~a~G~-rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKLR-V-VAHGF-QNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEecCCCeEE-E-EecCc-CCCccceECCCCC-EEEEcc
Confidence 5555554421 1 12232 3356799999998 565533
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.19 E-value=3.1 Score=35.31 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=37.7
Q ss_pred CCeeeEEEcCC------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE-EeecCCceeEEEecCCCCcEEEEEeC
Q 018293 209 ADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 209 ~~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
..+..+.|... .+.++++.-..+.|....+..... ...... +......+..+++.||| .+.++-..
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~ 325 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDS 325 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-T
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECC
Confidence 34555555532 223455555566788777764411 011111 12234478999999998 67776667
Q ss_pred CCcEE
Q 018293 282 DKMVK 286 (358)
Q Consensus 282 dg~i~ 286 (358)
+|.|+
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 78764
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=2.4 Score=39.04 Aligned_cols=181 Identities=9% Similarity=0.084 Sum_probs=92.3
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee---eecCCeeeEEEcCCC
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAWDPHA 220 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~ 220 (358)
--.|+|+++ +|+.+..+.-....+-.+.|+.+. .|++...+|++++|++-......... .....|..+.+.. +
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 346889985 466666554334478889999875 68888999999999986543322111 1223344444443 2
Q ss_pred CCeEEEEecCCeEEEE-EcccCCCCCCCCCCCccEEEee---cCCceeEEEecCCCC--cEEEEEe-CCCcEEEEecCCC
Q 018293 221 EHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVP--NLLATGS-TDKMVKLWDLSNN 293 (358)
Q Consensus 221 ~~~~~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~--~~l~~~~-~dg~i~i~d~~~~ 293 (358)
+ +++-..+|.+.+- +.... ....+.. ...+-+|-...+++. ..++--. ..+ ..++.....
T Consensus 139 G--Vavlt~~g~v~~i~~~~~~----------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~ 205 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILINGVEEP----------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES 205 (829)
T ss_pred c--eEEEecCCcEEEEcCCCcc----------hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence 3 3444445554433 22221 1111111 111112222222110 1111111 111 112222222
Q ss_pred CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293 294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
.. ....+....+.+..+..||+.++ |+--..+|.|.+-++...+.+-+
T Consensus 206 ~~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 206 RV-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred cc-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhhc
Confidence 21 12222222456888999999996 88888999999988876655443
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.07 E-value=0.99 Score=35.55 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=54.0
Q ss_pred ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-----eecCCceeEEEecCCCCcEEEEEeC
Q 018293 207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGST 281 (358)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~ 281 (358)
...++..+.. .+.++++-+.+|.+++||+.+.+......+..++... ......|..+.++.+| .-+++-+
T Consensus 11 Lgs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls- 85 (219)
T PF07569_consen 11 LGSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS- 85 (219)
T ss_pred cCCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-
Confidence 3444444443 3457888999999999999988653322111111111 0355678899999877 6666654
Q ss_pred CCcEEEEecCCCCc
Q 018293 282 DKMVKLWDLSNNQP 295 (358)
Q Consensus 282 dg~i~i~d~~~~~~ 295 (358)
+|..+.|+..-+..
T Consensus 86 ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 86 NGDSYSYSPDLGCW 99 (219)
T ss_pred CCCEEEecccccee
Confidence 58899999877654
No 440
>PLN02153 epithiospecifier protein
Probab=93.74 E-value=3.9 Score=34.88 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=14.2
Q ss_pred CcEEEEEEcC-----CeEEEEECCCCc
Q 018293 135 RNILASASAD-----KQVKIWDVAAGK 156 (358)
Q Consensus 135 ~~~l~s~~~d-----g~v~iwd~~~~~ 156 (358)
+.+++.|+.+ ..+.+||+++.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCE
Confidence 4466666653 357888987654
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.74 E-value=1.7 Score=40.35 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=71.8
Q ss_pred CCCeEEEEecCCeEEEEEcccCC-----C----C--CCCCCCCccEEEeecCCceeEEEec--CCCCcEEEEEeCCCcEE
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAK-----S----D--PDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVK 286 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~-----~----~--~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~~l~~~~~dg~i~ 286 (358)
+...|+++.+||.|.+|.+..-. . . ......++.+.+.. .....+++++ ... ++||+++....|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~-rlIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKS-RLIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcc-eEEEEecCCceEE
Confidence 44588889999999999774311 0 0 00011123344433 3467899998 654 7888888888888
Q ss_pred EEecCCCC-ceeeEecCCCCceeEEEEEcCCC-----CeEEEEEccCCeEEEEEc
Q 018293 287 LWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDS-----PFVLAIGGSKGKLEIWDT 335 (358)
Q Consensus 287 i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vw~~ 335 (358)
||-..... ......-..+...|.+|+|.++. ...+++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87665421 11111112355678899997754 225778899999999888
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.61 E-value=4.4 Score=35.01 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=48.7
Q ss_pred ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-----c--e-eeeecc----cccceeeEEEcCCCCcEEEEEeCC---
Q 018293 123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----K--C-NLTLEH----HTDKVQAVAWNHHSPQILLSGSFD--- 187 (358)
Q Consensus 123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~--~-~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d--- 187 (358)
.....+++.++ + +++ +......++.|.... + . +..+.. +......++|.|+| .+.++-+..
T Consensus 72 ~~p~Gi~~~~~-G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~ 147 (367)
T TIGR02604 72 SMVTGLAVAVG-G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLAS 147 (367)
T ss_pred CCccceeEecC-C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCc
Confidence 34578888887 4 444 344433334354311 1 1 112222 13447789999998 555544421
Q ss_pred ----------------CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293 188 ----------------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 227 (358)
Q Consensus 188 ----------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 227 (358)
|.|.-++....+... ....-.....++|++++ .++++-
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~-~a~G~rnp~Gl~~d~~G-~l~~td 201 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRV-VAHGFQNPYGHSVDSWG-DVFFCD 201 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEE-EecCcCCCccceECCCC-CEEEEc
Confidence 334444444333211 11112234678999954 455553
No 443
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.54 E-value=0.42 Score=25.45 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCceeEEEEEcCCCCeEEEEEccC--CeEEEE
Q 018293 304 KAGAVFSVAFSEDSPFVLAIGGSK--GKLEIW 333 (358)
Q Consensus 304 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw 333 (358)
....-....|+|||++++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999888888777 777666
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.37 E-value=7.9 Score=37.24 Aligned_cols=133 Identities=12% Similarity=0.156 Sum_probs=77.2
Q ss_pred eecCCeeeEEEc---CC---CCCeEEEEecCCeEEEEEcccCCC------CCCCCCCCccEEEeec---CCceeEEEecC
Q 018293 206 AVAADVESLAWD---PH---AEHSFVVSLEDGTIKGFDIRTAKS------DPDSTSQQSSFTLHAH---DKAVCTISYNP 270 (358)
Q Consensus 206 ~~~~~i~~~~~~---~~---~~~~~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~---~~~i~~i~~~~ 270 (358)
....+|..|+|. .. ...++++ -....+.|+...-.+. ........++..+..+ ..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 21 1234444 3455677777322211 1111112334444422 35678999999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCc---eeeEecCCCC----------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 271 LVPNLLATGSTDKMVKLWDLSNNQP---SCIASRNPKA----------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 271 ~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
.....||+....|...||++..... ........+. ..-..+.|.++-..+|+ ++ ...+.++|+.+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-CN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-Ec-CCceEEEECCC
Confidence 8778999999999999999922110 0111111111 22347889888775444 43 45789999988
Q ss_pred CCcc
Q 018293 338 DAGI 341 (358)
Q Consensus 338 ~~~~ 341 (358)
....
T Consensus 234 ~~~~ 237 (765)
T PF10214_consen 234 NWQT 237 (765)
T ss_pred CCcc
Confidence 7653
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.34 E-value=0.85 Score=39.24 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=93.8
Q ss_pred eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecC----Cee-eEEEcCCCCCeEEEEecCCe
Q 018293 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAA----DVE-SLAWDPHAEHSFVVSLEDGT 232 (358)
Q Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~----~i~-~~~~~~~~~~~~~~~~~dg~ 232 (358)
.+..-...+..+-..|++ +.+..-+. ..+.++++.+........ ...+ .|+ .+..-. ++..+.++..||-
T Consensus 215 ~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~ 291 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL 291 (733)
T ss_pred hcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc
Confidence 344455677788889999 66655543 678888876544322111 1111 122 111122 5567888888988
Q ss_pred EEEE-EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293 233 IKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 311 (358)
Q Consensus 233 i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 311 (358)
|.-| |.+...... ...+..++-...++..+.-..+ .+-+++-...|++.++.....++...... -..+.-+
T Consensus 292 vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~ 363 (733)
T COG4590 292 VSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLV 363 (733)
T ss_pred eeeeeeeecCCCCc----ceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceehhhh---hcCccee
Confidence 7665 666542100 1111222222233333332222 25677778889998887666553322222 2346668
Q ss_pred EEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293 312 AFSEDSPFVLAIGGSKGKLEIWDTLSDA 339 (358)
Q Consensus 312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 339 (358)
++||.+.+ ++ .-+.|.++++.+++..
T Consensus 364 ~~Sp~~~~-Ll-~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSPNQAY-LL-SEDQGKIRLAQLENRN 389 (733)
T ss_pred eeCcccch-he-eecCCceEEEEecCCC
Confidence 99999997 44 3556889999998754
No 446
>PLN02193 nitrile-specifier protein
Probab=93.30 E-value=3.6 Score=36.89 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=34.0
Q ss_pred cEEEEEeCC----CcEEEEecCCCCceeeEecC--CCCceeEEEEEcCCCCeEEEEEccC--------------CeEEEE
Q 018293 274 NLLATGSTD----KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIW 333 (358)
Q Consensus 274 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~vw 333 (358)
.+++.++.+ ..+.+||+.+.+...+.... .......+++. -+++ +++.|+.+ ..+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCE-EEEECCccCCccccccCccceeccEEEE
Confidence 566666655 45899999887643332221 11111112222 2344 77778753 247788
Q ss_pred EccCC
Q 018293 334 DTLSD 338 (358)
Q Consensus 334 ~~~~~ 338 (358)
|+.+.
T Consensus 408 D~~t~ 412 (470)
T PLN02193 408 DTETL 412 (470)
T ss_pred EcCcC
Confidence 88754
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=5.1 Score=35.48 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=49.2
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEe---------cCCCCcee----------eEecCCCCceeEEEEEcCCC---Ce
Q 018293 262 AVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSC----------IASRNPKAGAVFSVAFSEDS---PF 319 (358)
Q Consensus 262 ~i~~i~~~~~~~~~l~~~~~dg~i~i~d---------~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~---~~ 319 (358)
.|..+..++.| ..++-.+.+|.+.++= +..+++.. ++... ..-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCce
Confidence 46778888888 6666667777654432 12232211 11111 12346778999975 43
Q ss_pred EEEEEccCCeEEEEEccCCCcccc
Q 018293 320 VLAIGGSKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 320 ~l~~~~~dg~i~vw~~~~~~~~~~ 343 (358)
|..-+.|+.|++||+.....+..
T Consensus 183 -L~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 183 -LVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred -EEEEecCcEEEEEecCCcchhhc
Confidence 55567899999999988776643
No 448
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.12 E-value=5.1 Score=34.37 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=109.5
Q ss_pred CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc----CCCCc--EEEEEeCC---CcEEEEEcccCCCccce-
Q 018293 135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQ--ILLSGSFD---RSVVMKDARISTHSGFK- 204 (358)
Q Consensus 135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--~l~~~~~d---g~i~i~d~~~~~~~~~~- 204 (358)
..+++...+++-+.+||++ |+.++.+.. +.++.+... -.+.. +++++..+ ..|++|.+.........
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 5588888899999999976 556666642 233333321 12312 23333332 46999987632211101
Q ss_pred -------eeecCCeeeEEE--cCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293 205 -------WAVAADVESLAW--DPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274 (358)
Q Consensus 205 -------~~~~~~i~~~~~--~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 274 (358)
......+..+++ ++. +..++++...+|.+..|.+....... .....++.+.. .+.+..+...... .
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~--v~~~lVR~f~~-~sQ~EGCVVDDe~-g 220 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK--VSATLVREFKV-GSQPEGCVVDDET-G 220 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS--EEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc--EeeEEEEEecC-CCcceEEEEeccc-C
Confidence 011123556665 343 44567778899999999886432100 00134555544 4567888888766 6
Q ss_pred EEEEEeCCCcEEEEecCCCC---ceeeEecCC--CCceeEEEEEcC--CC-CeEEEEEccCCeEEEEEccCC
Q 018293 275 LLATGSTDKMVKLWDLSNNQ---PSCIASRNP--KAGAVFSVAFSE--DS-PFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 275 ~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~--~~~~v~~~~~~~--~~-~~~l~~~~~dg~i~vw~~~~~ 338 (358)
.|+.+-++.-|.-|+.+... ...+....+ ....|..++.-. ++ .|++++.-.+++..||+....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88889888878888876322 222322222 345677777743 33 477887778889999998754
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.02 E-value=4.6 Score=34.13 Aligned_cols=104 Identities=7% Similarity=0.064 Sum_probs=47.8
Q ss_pred CcEEEEEEcC-----CeEEEEECCCCcee---eeecccccce--eeEEEcCCCCcEEEEEeC-----CCcEEEEEcccCC
Q 018293 135 RNILASASAD-----KQVKIWDVAAGKCN---LTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDARIST 199 (358)
Q Consensus 135 ~~~l~s~~~d-----g~v~iwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~ 199 (358)
+.+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++.. ++ .+.+.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence 4466667654 35667777665431 1221111111 122222 33 56666664 2357788887654
Q ss_pred Cccce-eeecCCeeeEEEcCCCCCeEEEEecCC----eEEEEEcccC
Q 018293 200 HSGFK-WAVAADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTA 241 (358)
Q Consensus 200 ~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg----~i~i~d~~~~ 241 (358)
-.... ..........+... ++.+++.|+.++ .+..||..+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence 22111 01111111111112 345777777654 3567887764
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=5.6 Score=34.57 Aligned_cols=104 Identities=8% Similarity=0.135 Sum_probs=64.8
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee----eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 196 (358)
.+++|.++.|++| .+.+|.--.|++|.+++....+.. .+.+.....|....|.... . ++.....| +-+|...
T Consensus 65 d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e-~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-E-IAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-e-EEEEecCC-eEEEEEc
Confidence 4569999999999 779999999999999997433322 2223344568889998764 3 44444333 4555443
Q ss_pred cCC-CccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293 197 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSL 228 (358)
Q Consensus 197 ~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 228 (358)
... ..+....+...|.-..|.++..-.+++.+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 322 22223445666777778885443333333
No 451
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.98 E-value=5.8 Score=34.67 Aligned_cols=297 Identities=8% Similarity=0.059 Sum_probs=144.4
Q ss_pred CCcEEEEEEecCCCceEEEEEEeccCCC-C-CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc
Q 018293 6 NDAVIVCARNEDDVSHLEVYILEESDGG-D-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 83 (358)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~ 83 (358)
....|++|+.++ .+.+|...... . ..+.... ....+++.++.-.+. -..+...||+- .-..+.||.+.
T Consensus 36 ~~d~IivGS~~G-----~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~--s~~~~~~LaVL-hP~kl~vY~v~ 105 (418)
T PF14727_consen 36 GSDKIIVGSYSG-----ILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFV--SGSEDLQLAVL-HPRKLSVYSVS 105 (418)
T ss_pred CccEEEEecccc-----EEEEEccCCCCCCCccEEEEE--ecCCcEEEEEecccc--CCCCcceEEEe-cCCEEEEEEEE
Confidence 345777776676 78888875532 1 1333333 345666677664330 02234466664 46788999984
Q ss_pred cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC-CCCcEEEEEEcCCeEEEEECCCCceeeeec
Q 018293 84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLE 162 (358)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 162 (358)
....... .+. ...-.....+.+....-...+-.|-. .+..+++.-+.||.+.+++-+.....+.+.
T Consensus 106 ~~~g~~~--------~g~-----~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp 172 (418)
T PF14727_consen 106 LVDGTVE--------HGN-----QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP 172 (418)
T ss_pred ecCCCcc--------cCc-----EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC
Confidence 3221100 000 00001111122222222233333332 225689999999999999966544334443
Q ss_pred ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--------------------CCcccee--eecCCeeeE---EEc
Q 018293 163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--------------------THSGFKW--AVAADVESL---AWD 217 (358)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~--~~~~~i~~~---~~~ 217 (358)
. ---...+.+.+.. ..|++++.+..+.-|....- +.....+ .....+..+ .++
T Consensus 173 ~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 173 D-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred C-CCCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 2 2223346777776 67888888888888865311 1111111 122333333 333
Q ss_pred CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce--eEE--EecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTI--SYNPLVPNLLATGSTDKMVKLWDLSNN 293 (358)
Q Consensus 218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i--~~i--~~~~~~~~~l~~~~~dg~i~i~d~~~~ 293 (358)
.....+++.| ..++.+.+.... .+....+....... ..+ ...|.....++.++.++.+.||.=.+-
T Consensus 251 ~~~~~IvvLg--er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L 320 (418)
T PF14727_consen 251 SSESDIVVLG--ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL 320 (418)
T ss_pred CCCceEEEEe--cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE
Confidence 2222233333 233444443211 01111221111111 111 112222235888899999999974332
Q ss_pred CceeeEecCCCCceeEEEEEc--CCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 294 QPSCIASRNPKAGAVFSVAFS--EDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 294 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
+........+| ++... ++-+-++++-+.+|.+.+-=+.+...+.
T Consensus 321 ----~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 321 ----VWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred ----EEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 22222222332 23222 2222378889999999998887765444
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.81 E-value=2.5 Score=29.95 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=64.5
Q ss_pred EecCCCCCcEEEEEEcCCeEEEEECCCCc--------eeeeecccccceeeEEEcC----CCCcEEEEEeCCCcEEEEEc
Q 018293 128 LAWNKEFRNILASASADKQVKIWDVAAGK--------CNLTLEHHTDKVQAVAWNH----HSPQILLSGSFDRSVVMKDA 195 (358)
Q Consensus 128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~ 195 (358)
-.|... ...|++++.-|.|.|++..... .+..+. -...|++++-.+ ++...|+.|+ ...+..||+
T Consensus 4 GkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345555 3468888888999999876432 233333 445677775433 2334555555 668999999
Q ss_pred ccCCCccceeeecCCeeeEEEcC---CCCCeEEEEecCCeEEEEEccc
Q 018293 196 RISTHSGFKWAVAADVESLAWDP---HAEHSFVVSLEDGTIKGFDIRT 240 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~ 240 (358)
....... .......+.++.+-. ....++++| .+..|.-||...
T Consensus 81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred ccCchhh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 8876654 344556677776522 123344444 456666666554
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=3.6 Score=31.67 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=59.7
Q ss_pred CCceEEecCCC--CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 64 KGNFMAVGSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 64 ~~~~l~~g~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
+|.++.+.+.- ..|++||+.+++......+.+ + .-....|+.+ +.....-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~--------------------~~FgEGit~~-----gd~~y~LT 107 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--D--------------------TVFGEGITKL-----GDYFYQLT 107 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--c--------------------cccccceeec-----cceEEEEE
Confidence 56667666543 479999998776655433210 0 0111223222 12233444
Q ss_pred EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
-.+|....+|..+.+++..+. ..+.=..++- ++ ..++.++...+++.-|.++..
T Consensus 108 w~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~-~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DD-KNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred eccceeEEEChHHhhhhcccc-cCCcceeeec--CC-cceEeeCCceEEEecCHHHhh
Confidence 567888899998888877776 3344455543 44 335566556677777766543
No 454
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=4.8 Score=32.84 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=94.1
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc--ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
.+-+..+.++.+ +...+..+.-++|.|+.+......+... .+.-.++.. .| +++..+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCC
Confidence 345667777754 7777778888999999876543333211 133334443 45 778888877778889998876
Q ss_pred Cccceeee---cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcE
Q 018293 200 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNL 275 (358)
Q Consensus 200 ~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~ 275 (358)
........ ......++.+ +++...+..|+-+.+-|+.... .+...-.-. ...+.++..+++. .+
T Consensus 160 sP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~--------sPvli~~~n~g~g~~sv~vsdnr-~y 227 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH--------SPVLIGSYNTGPGTYSVSVSDNR-AY 227 (370)
T ss_pred CceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC--------CCeEEEEEecCCceEEEEecCCe-eE
Confidence 65432221 2223456664 3477778889999999998763 333222222 3367888888754 44
Q ss_pred EEEEeCCCcEEEEecCCCC
Q 018293 276 LATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 276 l~~~~~dg~i~i~d~~~~~ 294 (358)
++.. +--+.+-|..+..
T Consensus 228 ~vvy--~egvlivd~s~~s 244 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEc--ccceEEEecCCCC
Confidence 4433 3346666766554
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.64 E-value=5 Score=32.99 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe------CCCcEEEEEcccCCCcccee----eecCCeee
Q 018293 144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVES 213 (358)
Q Consensus 144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~----~~~~~i~~ 213 (358)
-..|++||..+.+-..--.+-.+.|+++.|..+. ++++.|. ....+..||..+..-..... ...+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 3469999988776655555567889999998655 6676664 35568889987765322111 23577888
Q ss_pred EEEcCCCC-CeEEEEe-cCC--eEEEEEcccC
Q 018293 214 LAWDPHAE-HSFVVSL-EDG--TIKGFDIRTA 241 (358)
Q Consensus 214 ~~~~~~~~-~~~~~~~-~dg--~i~i~d~~~~ 241 (358)
+.+...+. ++.++|. .+| .|..||=.+.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 88754443 3454544 333 4666665443
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.64 E-value=0.64 Score=25.09 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=27.1
Q ss_pred CCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEE
Q 018293 132 KEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW 173 (358)
Q Consensus 132 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 173 (358)
|+++.++++...+++|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 454545555667899999999988887777642 33334444
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.57 E-value=1.1 Score=35.35 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=47.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCce-eecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPH-VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 140 (358)
..++++|++-+.+|.+++||+.+.....+. .+..-.+. .. ..-......|..+.++.+ +.-+++
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~------------~~--~~~~~~~~~i~~~~lt~~-G~PiV~ 83 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS------------SP--VSDKSSSPNITSCSLTSN-GVPIVT 83 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc------------cc--cccCCCCCcEEEEEEcCC-CCEEEE
Confidence 347889999999999999999876655432 11000000 00 000045677888889877 444554
Q ss_pred EEcCCeEEEEECCCC
Q 018293 141 ASADKQVKIWDVAAG 155 (358)
Q Consensus 141 ~~~dg~v~iwd~~~~ 155 (358)
- .+|....|+..-+
T Consensus 84 l-sng~~y~y~~~L~ 97 (219)
T PF07569_consen 84 L-SNGDSYSYSPDLG 97 (219)
T ss_pred E-eCCCEEEeccccc
Confidence 4 4578888886543
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.56 E-value=5.1 Score=32.93 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=57.1
Q ss_pred CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe------cCCeEEEEEcccCCCCCCCCCCCccEEEee--
Q 018293 187 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-- 258 (358)
Q Consensus 187 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 258 (358)
-..|++||....+-...-....+.|+.+.|.. +..++++|. ....+..||..+.. ...+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~----------w~~~~~~~ 83 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT----------WSSLGGGS 83 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe----------eeecCCcc
Confidence 34689999887665444445678899999985 455666663 35578889988652 222222
Q ss_pred ---cCCceeEEEecCC-CCcEEEEEe-CCCc--EEEEecC
Q 018293 259 ---HDKAVCTISYNPL-VPNLLATGS-TDKM--VKLWDLS 291 (358)
Q Consensus 259 ---~~~~i~~i~~~~~-~~~~l~~~~-~dg~--i~i~d~~ 291 (358)
-.+++..+.+... +.++.++|. .++. |..||=.
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 2467777777543 324555554 3444 5556543
No 459
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.44 E-value=10 Score=36.21 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=42.3
Q ss_pred cEEEEEEcCCeEEEEECCCCceeeeeccccccee-------------eEEEcC--CCCcEEEEEeC----------CCcE
Q 018293 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV 190 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~l~~~~~----------dg~i 190 (358)
..++.++.|+.+.-.|.++|+....+.. .+.+. .+.-.| .+ ..+++++. +|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence 4788888999999999999998877642 11110 011111 12 34566643 6889
Q ss_pred EEEEcccCCCcc
Q 018293 191 VMKDARISTHSG 202 (358)
Q Consensus 191 ~i~d~~~~~~~~ 202 (358)
+-+|.++++..-
T Consensus 339 ~A~Da~TGkl~W 350 (764)
T TIGR03074 339 RAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCcEee
Confidence 999999887643
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=7.1 Score=34.01 Aligned_cols=143 Identities=6% Similarity=0.056 Sum_probs=83.7
Q ss_pred CCCcEEEEEcccCC---CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293 186 FDRSVVMKDARIST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 262 (358)
Q Consensus 186 ~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (358)
..|.+.-|.+.... .+.......++|.++.|++| +..+++--.++.|.+++....+... .....-......
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQL-----EYTQECKTKNAN 114 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhh-----HHHHHhccCcce
Confidence 34445555554332 22223345678999999995 5689999999999999985442110 112222333456
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccCC
Q 018293 263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSD 338 (358)
Q Consensus 263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~ 338 (358)
|....|+... -++..+..| +-+|-....+. .+.....|...|.=..|.++.+-+|.+.+ ..+.+.=+.++.+
T Consensus 115 IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 115 ILGFCWTSST--EIAFITDQG-IEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEecCe--eEEEEecCC-eEEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 8899999753 444444444 66666544321 34444556667777888888875555444 3444444444443
No 461
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.30 E-value=6.6 Score=33.57 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=20.6
Q ss_pred cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293 284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327 (358)
Q Consensus 284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 327 (358)
.+.+||..+.+...+..+... .-...+..-+++ +++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~-iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNG-VLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCC--ceeeEEEEcCCE-EEEEeccC
Confidence 467888887664333322211 111223333555 67777765
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=92.05 E-value=6.9 Score=33.28 Aligned_cols=155 Identities=10% Similarity=0.119 Sum_probs=79.9
Q ss_pred ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-C-CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293 165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-T-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242 (358)
Q Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 242 (358)
...+..+.+.|++ .++ ..+..|.+..- ...+ + -..........+..+.+.+++ ..++++ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g-~~v-~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYV-AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC-eEE-EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccCCCCC
Confidence 4568889999887 544 44556655432 1111 1 111122334568889998854 455554 56766432233221
Q ss_pred CCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec-CCCCceeEEEEEcCCCCeE
Q 018293 243 SDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFV 320 (358)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 320 (358)
. ....... ......+..+.+.|++ ..++ ++.+|.+. .....++....... ..-......+.|..+++ .
T Consensus 247 s------W~~~~~~~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (334)
T PRK13684 247 S------WSKPIIPEITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-G 316 (334)
T ss_pred c------cccccCCccccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc-e
Confidence 1 0110000 0012346788898866 5544 45577654 34444442111111 12224577888887776 4
Q ss_pred EEEEccCCeEEEEEc
Q 018293 321 LAIGGSKGKLEIWDT 335 (358)
Q Consensus 321 l~~~~~dg~i~vw~~ 335 (358)
++ .+..|.|.-|+-
T Consensus 317 ~~-~G~~G~il~~~~ 330 (334)
T PRK13684 317 FV-LGQRGVLLRYVG 330 (334)
T ss_pred EE-ECCCceEEEecC
Confidence 55 567788877753
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.93 E-value=1 Score=41.26 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=27.7
Q ss_pred ccEEEEecCC---CCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293 123 DSVLGLAWNK---EFRNILASASADKQVKIWDVAAGKCNLTL 161 (358)
Q Consensus 123 ~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 161 (358)
..+..+++.. ++..++++.+.|+++|+||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3445555554 23679999999999999999999986654
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.89 E-value=3.2 Score=31.33 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=26.2
Q ss_pred ccEEEEecCCCC-----CcEEEEEEcCCeEEEEECCC
Q 018293 123 DSVLGLAWNKEF-----RNILASASADKQVKIWDVAA 154 (358)
Q Consensus 123 ~~v~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~ 154 (358)
..|..++|||.| +-+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999953 45889999999999998653
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=3.6 Score=40.55 Aligned_cols=164 Identities=13% Similarity=0.182 Sum_probs=92.6
Q ss_pred CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc--------CCCCcEEEEEeCCCcEEE
Q 018293 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--------HHSPQILLSGSFDRSVVM 192 (358)
Q Consensus 121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~i~i 192 (358)
|...=+.+-+-|.=+..-+ +-|+.+.+|+.+++.....+.+....|..+..- |.= ++++....--.|.+
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVI 153 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEE
Confidence 3333344444444233333 457899999999987778887777777776542 222 23333333445666
Q ss_pred EEcccCCCc----cce-----eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC-----------CC----C
Q 018293 193 KDARISTHS----GFK-----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-----------DS----T 248 (358)
Q Consensus 193 ~d~~~~~~~----~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-----------~~----~ 248 (358)
+-+...+.. ... ......|.++.... +++.|++| .|| .+|.+.-..... .. .
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~ 229 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSS 229 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHH
Confidence 544322211 101 11244577888444 55455555 566 444443211100 00 0
Q ss_pred CCCccEEEe-ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 249 SQQSSFTLH-AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 249 ~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
-...+..+. .+..+|..+.+.... +.+.+-+..|+|.+||+..
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 001122233 567799999999866 8999999999999999977
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.87 E-value=6.5 Score=32.57 Aligned_cols=175 Identities=10% Similarity=0.078 Sum_probs=88.8
Q ss_pred eEEEEECCCCceeeeecc------cccceeeEEEcCCCC----cEE-EEEeCCCcEEEEEcccCCCccce----------
Q 018293 146 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP----QIL-LSGSFDRSVVMKDARISTHSGFK---------- 204 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~l-~~~~~dg~i~i~d~~~~~~~~~~---------- 204 (358)
.+.+||+++++.++++.- ..+.+..+.+....+ .++ ++=+..+.|.++|+.+++..+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577788888887766642 235667777765321 233 33344568999999876532211
Q ss_pred ---------eeecCCeeeEEEcC---CCCCeEEEEecCCeEEEEEcccCCCCCCCCC-----CCccEEEeecCCceeEEE
Q 018293 205 ---------WAVAADVESLAWDP---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS-----QQSSFTLHAHDKAVCTIS 267 (358)
Q Consensus 205 ---------~~~~~~i~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~i~ 267 (358)
......+..++.+| ++ ..++-..-.+ -++|.+.+......... ...+..+.........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 11223355566655 22 2344333222 12333332211110000 011222222224567788
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCC----CCceeeEecCCCCceeEEEEEcC--CCCeEEEEE
Q 018293 268 YNPLVPNLLATGSTDKMVKLWDLSN----NQPSCIASRNPKAGAVFSVAFSE--DSPFVLAIG 324 (358)
Q Consensus 268 ~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~ 324 (358)
++++| .++++--..+.|..|+..+ .....+..-...-..+..+.+.+ +|. +.+..
T Consensus 193 ~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 193 IDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp EETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred ECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 99987 8888888899999999886 22222222222245678889988 776 45443
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=7.7 Score=34.43 Aligned_cols=29 Identities=7% Similarity=-0.142 Sum_probs=21.8
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKIWD 151 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 151 (358)
.-.|..+..++. +..++-.+.+|.+.++=
T Consensus 103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPT-GSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCC-CceEEEecCCeeEEEEc
Confidence 456888889999 55777777888766654
No 468
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.72 E-value=7.3 Score=32.90 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=15.1
Q ss_pred cEEEEEeCCCc----EEEEecCCCCc
Q 018293 274 NLLATGSTDKM----VKLWDLSNNQP 295 (358)
Q Consensus 274 ~~l~~~~~dg~----i~i~d~~~~~~ 295 (358)
.+.+.|+.++. +.+||..+.+.
T Consensus 173 ~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 173 ELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEEEEcCCCCccccceEEEecCCCee
Confidence 67777776542 56889888764
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=12 Score=37.15 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 269 NPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 269 ~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
.+++ ..++++..||.+..||...++
T Consensus 243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDG-SHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCC-ceEEEEEecCCEEeeecCCCc
Confidence 6766 899999999999999998864
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.53 E-value=8.8 Score=33.46 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=74.4
Q ss_pred eeEEEcCCCCcEEEEEeCCCcEE-EEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC
Q 018293 169 QAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 247 (358)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 247 (358)
..+..++++ .+++.+. .|.+. -||--...-..........+..+.+.+++. +++++ .+|.+.. ....+....
T Consensus 242 ~~v~~~~dG-~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~~-S~d~G~~~~-- 314 (398)
T PLN00033 242 STVNRSPDG-DYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLYV-SKGTGLTEE-- 314 (398)
T ss_pred eeEEEcCCC-CEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEEE-ecCCCCccc--
Confidence 344556665 4444443 44433 233211100111233345678899988543 44444 6666543 322221000
Q ss_pred CCCCccEEEee--cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEE
Q 018293 248 TSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIG 324 (358)
Q Consensus 248 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~ 324 (358)
......... ....+.++.+.+++ .. ++++..|.+.... ..++...... ...-...++.+.|.++++ .++ .
T Consensus 315 --~~~f~~~~~~~~~~~l~~v~~~~d~-~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-~ 387 (398)
T PLN00033 315 --DFDFEEADIKSRGFGILDVGYRSKK-EA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV-L 387 (398)
T ss_pred --ccceeecccCCCCcceEEEEEcCCC-cE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-E
Confidence 001111111 12358889999876 44 4455678666553 3443211111 122345688999988777 355 4
Q ss_pred ccCCeEEEE
Q 018293 325 GSKGKLEIW 333 (358)
Q Consensus 325 ~~dg~i~vw 333 (358)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 667877655
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.24 E-value=6.9 Score=31.66 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=122.9
Q ss_pred CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293 58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137 (358)
Q Consensus 58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 137 (358)
.++-+|||..-.++...|.|--.|-.+++.... --+....-..|..-|++...
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---------------------------pLg~Ga~Phgiv~gpdg~~W 118 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---------------------------PLGSGASPHGIVVGPDGSAW 118 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEE---------------------------ecCCCCCCceEEECCCCCee
Confidence 344467776666666666555555544333221 11233445566777885544
Q ss_pred EEEEEcCCeEEEEECCCCceee-e--ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293 138 LASASADKQVKIWDVAAGKCNL-T--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 214 (358)
Q Consensus 138 l~s~~~dg~v~iwd~~~~~~~~-~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 214 (358)
+.-.+. .|.-.|-++.+..+ . .+.-........|.+.| ++-+++.. |.---.|..+................|
T Consensus 119 itd~~~--aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi 194 (353)
T COG4257 119 ITDTGL--AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG-NLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGI 194 (353)
T ss_pred EecCcc--eeEEecCcccceEEeecccccCCCcccceeeCCCc-cEEEeecc-ccceecCcccCceeeeccCCCCCCcce
Confidence 432222 45555665554321 1 12233556778899998 77777652 211111221111111111233456678
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 294 (358)
+..|+++ ..++.-.++.|...|...... +.+..-......-..+-.+|.+ +.-++-...+.+.-||.....
T Consensus 195 ~atpdGs-vwyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 195 CATPDGS-VWYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EECCCCc-EEEEeccccceEEcccccCCc-------ceecCCCcccccccccccCccC-cEEEeccCCceeeEeCccccc
Confidence 8888665 566655666777777766521 1111112212334556666766 666666667788888876654
Q ss_pred ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
. ....+.+....-.++.....++ +..+--.-|.|.-+|-++
T Consensus 266 W-~eypLPgs~arpys~rVD~~gr-VW~sea~agai~rfdpet 306 (353)
T COG4257 266 W-IEYPLPGSKARPYSMRVDRHGR-VWLSEADAGAIGRFDPET 306 (353)
T ss_pred c-eeeeCCCCCCCcceeeeccCCc-EEeeccccCceeecCccc
Confidence 2 3344444444555666666665 343333345555555543
No 472
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.99 E-value=9.8 Score=33.00 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=24.9
Q ss_pred EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC------eEEEEEccC
Q 018293 285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS 337 (358)
Q Consensus 285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vw~~~~ 337 (358)
+.+||..+.+...+..+....... .+..-++. +++.|+... .|..++.+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~--~av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYG--VSVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred hheEEecCCcccccCcCCCCccce--EEEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence 457888877643333222111112 23333455 677777542 455555554
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=10 Score=37.58 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=42.6
Q ss_pred eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 257 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
..+..++.+..+.... -.+.+...+.+.+|+.............+ ..+++++. .++++..||.+.+||..
T Consensus 195 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~v~~h~Dgs~~fWd~s 264 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPT--KILIGFNRGLVVIKDRASKYVQSAYLPNG-------QLESRDGS-HFVSYHTDGSYAFWDVS 264 (993)
T ss_pred cccccccceeeeecCC--Ccceeeeeeeeeehhcccccchhhccccc-------ccCccCCc-eEEEEEecCCEEeeecC
Confidence 3344455555544433 23344445666666654433111111111 12278888 69999999999999999
Q ss_pred CCCc
Q 018293 337 SDAG 340 (358)
Q Consensus 337 ~~~~ 340 (358)
.++.
T Consensus 265 ~g~~ 268 (993)
T KOG1983|consen 265 SGKL 268 (993)
T ss_pred CCce
Confidence 8754
No 474
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.74 E-value=15 Score=34.81 Aligned_cols=36 Identities=11% Similarity=0.317 Sum_probs=29.7
Q ss_pred CCcccEEEEecCCCC--CcEEEEEEcCCeEEEEECCCC
Q 018293 120 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG 155 (358)
Q Consensus 120 ~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 155 (358)
.+...|..+.|+|.+ +..|+.-..|+++++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 456789999999974 468888899999999999754
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.40 E-value=7 Score=30.36 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=64.2
Q ss_pred cEEEEEEcCCeEEEEECC--CCceeeeecccccceeeEEEcCCCCcEEEEEeCCC------cEEEE---EcccC--CCcc
Q 018293 136 NILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK---DARIS--THSG 202 (358)
Q Consensus 136 ~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~---d~~~~--~~~~ 202 (358)
..|+.+...+.|.+|++. ..+...++.. -+.|..+.++..| +++++--.+. .+++| +.... ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 345454667889999988 3355666663 3789999999999 8888865432 44553 32211 1100
Q ss_pred ----------------------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 203 ----------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 203 ----------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
.......++.+++..|..+++++.+ ++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 0112244678888888777655443 567889988765
No 476
>PLN02193 nitrile-specifier protein
Probab=90.32 E-value=13 Score=33.38 Aligned_cols=102 Identities=9% Similarity=0.088 Sum_probs=48.2
Q ss_pred CcEEEEEEcC-----CeEEEEECCCCceee--eec--ccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCC
Q 018293 135 RNILASASAD-----KQVKIWDVAAGKCNL--TLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTH 200 (358)
Q Consensus 135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 200 (358)
+.+.+.|+.+ ..+..||+.+.+-.. ... .....-.++.. -++ .+++.|+.++ .+..||+.+.+-
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence 4466666654 358888988764322 110 01111112222 233 6677776543 356677665431
Q ss_pred ccce-----eeecCCeeeEEEcCCCCCeEEEEecC----CeEEEEEcccC
Q 018293 201 SGFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA 241 (358)
Q Consensus 201 ~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~ 241 (358)
.... .........+.+ ++.+++.++.+ ..+.+||+.+.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence 1100 000111112222 34466666654 45888998765
No 477
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=89.42 E-value=13 Score=32.09 Aligned_cols=183 Identities=15% Similarity=0.119 Sum_probs=101.2
Q ss_pred eEEEEECCCCceeeeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCe
Q 018293 146 QVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 223 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (358)
.+.+.| +....+..+.+ ....|.++.|..+- -++++--+-.-+.+.|+...+.........-+-.+--.+|-+++.
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~ 484 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR 484 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence 344444 33445555543 45789999998876 678887777789999999888776555544444444566766555
Q ss_pred EE-EEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecC----CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293 224 FV-VSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 296 (358)
Q Consensus 224 ~~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 296 (358)
++ +|..+|. |.+||+.......+ .....+..-- ..-.+..|.|..+-+++-+...|. |+.++.+.
T Consensus 485 ~lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~-- 556 (603)
T COG4880 485 LLGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS-- 556 (603)
T ss_pred EEEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--
Confidence 54 5666775 55688876532111 0011111100 011234455544334444444554 45555553
Q ss_pred eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
.+.....|.......-|..|- +...|+. .+.++|-.+.+.+.
T Consensus 557 kl~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vg 598 (603)
T COG4880 557 KLRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVG 598 (603)
T ss_pred eeeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhh
Confidence 334444566666666676664 3333432 47777766666554
No 478
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=89.39 E-value=17 Score=33.17 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=104.8
Q ss_pred eEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCe
Q 018293 146 QVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 223 (358)
Q Consensus 146 ~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (358)
.|.+.| ++.+.+..+. +....|.++.|--+. -+++|--.---+.+.|+...+.....-..+-+-.+=-+||-++++
T Consensus 305 ~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~-~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~ 382 (521)
T PF09826_consen 305 NLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDR-AYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH 382 (521)
T ss_pred EEEEEC-CCCcEeEEccccCCCceEEEEEEeCCe-EEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence 466666 5555555554 245789999998877 678877776779999999988777665555555555566755555
Q ss_pred EEEEecC------------CeEEEEEcccCCCCCCCCCCCccEEEee-c-------CCceeEEEecCCCCcEEEEEeC--
Q 018293 224 FVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHA-H-------DKAVCTISYNPLVPNLLATGST-- 281 (358)
Q Consensus 224 ~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~-------~~~i~~i~~~~~~~~~l~~~~~-- 281 (358)
|+.-+.+ =.|.+||+...... +.+....- . ...-.++.|.+.. ++|+.--.
T Consensus 383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P------~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~~ 455 (521)
T PF09826_consen 383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANP------KELDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSSS 455 (521)
T ss_pred EEEEcccCcccccccccceeEEEEEecCCCCCc------cEeEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEEc
Confidence 5553332 14778999876431 11111111 0 0112467777765 55543222
Q ss_pred -----CCcEEEEecCC-CCceeeEecCCCCc-------eeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293 282 -----DKMVKLWDLSN-NQPSCIASRNPKAG-------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 338 (358)
Q Consensus 282 -----dg~i~i~d~~~-~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 338 (358)
-..+.++++.. ......... .|.. .+....+..|. |.+.+ ++.|+++|+.+.
T Consensus 456 ~~~~~~~g~~v~~i~~~~g~~~~g~i-~h~~~~~~~~~~~~R~lyi~d~---lYtvS-~~~i~~~~l~t~ 520 (521)
T PF09826_consen 456 YGYFNFQGAYVFSIDPEDGFTLKGKI-THPSPDYYYSYQIQRSLYIGDT---LYTVS-DNGIKAYDLNTL 520 (521)
T ss_pred cCccccceEEEEEEeCCCCeEEEEEE-EccCcccccccceeEEEEECCE---EEEEE-CCEEEEEehHhc
Confidence 13377888873 322222222 2333 36666666663 44444 467999998764
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.19 E-value=2.2 Score=39.12 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=40.1
Q ss_pred cEEEEEeCCCcEEEEecCC----CCceeeEecC--------------------CCCceeEEEEEcC----CCCeEEEEEc
Q 018293 274 NLLATGSTDKMVKLWDLSN----NQPSCIASRN--------------------PKAGAVFSVAFSE----DSPFVLAIGG 325 (358)
Q Consensus 274 ~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~--------------------~~~~~v~~~~~~~----~~~~~l~~~~ 325 (358)
..++.+..||.+....... +.......+. ........++++. +.. ++++.+
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~tl~ 237 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FLFTLS 237 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EEEEEE
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EEEEEe
Confidence 6677778888887777664 1111110010 1123455566665 455 588899
Q ss_pred cCCeEEEEEccCCCcccc
Q 018293 326 SKGKLEIWDTLSDAGISN 343 (358)
Q Consensus 326 ~dg~i~vw~~~~~~~~~~ 343 (358)
.|+.+|+||+.+++++..
T Consensus 238 ~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TTSEEEEEETTTTCEEEE
T ss_pred CCCeEEEEECCCCeEEEE
Confidence 999999999999998554
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=89.18 E-value=12 Score=31.29 Aligned_cols=240 Identities=15% Similarity=0.073 Sum_probs=110.3
Q ss_pred CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293 64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143 (358)
Q Consensus 64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 143 (358)
++++|+.|+++|...+. ++... ... ....+...|+++...+..+.+++-++.
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~-~~~--------------------------~kl~~~~~v~q~~v~~~~~lLi~Lsgk 63 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQP-GTL--------------------------EKLIGRRSVTQIWVLEENNVLLMISGK 63 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCC-CCe--------------------------EEecCcCceEEEEEEhhhCEEEEEeCC
Confidence 44789999999976554 54211 011 111356789999998884434444444
Q ss_pred CCeEEEEECCCCce---------------eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--CCccce--
Q 018293 144 DKQVKIWDVAAGKC---------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFK-- 204 (358)
Q Consensus 144 dg~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~-- 204 (358)
...++.+++..-.. ....-.+................++++....+|.++..... +.....
T Consensus 64 ~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~ 143 (302)
T smart00036 64 KPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSK 143 (302)
T ss_pred cceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccc
Confidence 45599999842221 00111233323333333222234455555667777654332 111110
Q ss_pred ----eeecCCeeeEEEcCC-CCCeEEEEecCCeEEEEEccc--CCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEE
Q 018293 205 ----WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRT--AKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLL 276 (358)
Q Consensus 205 ----~~~~~~i~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l 276 (358)
.....++..+..+++ ....+.+|+..+...++++.. ..... ........... .++....+. ++ .+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d----~sl~~~~~~~~~~p~~i~~l~-~~-e~L 217 (302)
T smart00036 144 FLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED----LSLPFLSEETSLKPISVVQVP-RD-EFL 217 (302)
T ss_pred ccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc----ccccccccccccCceEEEEEC-CC-eEE
Confidence 011123333332332 234677776653344455533 11000 00000111111 344444443 33 454
Q ss_pred EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293 277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 344 (358)
Q Consensus 277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 344 (358)
++ - |....+-|....+......+. -.....++++.. .|+++. .+..|.++++.+++.+...
T Consensus 218 lc-~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~--~~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 218 LC-Y-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAF--HDNGIEIRSIKTGELLQEL 278 (302)
T ss_pred EE-E-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEE--cCCcEEEEECCCCceEEEE
Confidence 44 3 334445555541111111111 123455667764 555553 3556999999998765543
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.11 E-value=0.88 Score=24.52 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293 315 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345 (358)
Q Consensus 315 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 345 (358)
|++++++++.-.++.|.++|..+++.+.+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5777777777788999999998877665533
No 482
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=8.9 Score=29.65 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=86.5
Q ss_pred CcEEEEEEcC--CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCee
Q 018293 135 RNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE 212 (358)
Q Consensus 135 ~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 212 (358)
+.++.+.+.- ..|++||+.+++.+..-.-....+..=-...-++.+..-.-.+|.-..+|.++-+... ....++.-.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-RFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-ccccCCcce
Confidence 4566665543 4699999999987655432211221111112222344445567888889988776654 233344444
Q ss_pred eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293 213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291 (358)
Q Consensus 213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~ 291 (358)
.++-. +.+ ++.+.....++.-|..+-.... .......+. -..++.+.|-. | .+.+-.=.+..|...|..
T Consensus 135 gLt~d--~~~-LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~LNELE~Vd-G-~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 135 GLTSD--DKN-LIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSKLNELEWVD-G-ELYANVWQTTRIARIDPD 204 (262)
T ss_pred eeecC--Ccc-eEeeCCceEEEecCHHHhhhcc-----eEEEEECCeecccccceeeec-c-EEEEeeeeecceEEEcCC
Confidence 55433 343 5555445566666665542110 111111110 11223333332 2 222222223333334444
Q ss_pred CCCceeeE----------ecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293 292 NNQPSCIA----------SRNPKAGAVFSVAFSEDSPFVLAIGG 325 (358)
Q Consensus 292 ~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~ 325 (358)
+++..... ....+....+.+++.|++..++++|-
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 44422221 22234556888999998855787764
No 483
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.88 E-value=13 Score=32.21 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=7.3
Q ss_pred eEEEEEcccC
Q 018293 232 TIKGFDIRTA 241 (358)
Q Consensus 232 ~i~i~d~~~~ 241 (358)
.+.+||..+.
T Consensus 190 ~v~~YD~~t~ 199 (376)
T PRK14131 190 EVLSYDPSTN 199 (376)
T ss_pred eEEEEECCCC
Confidence 5788887764
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.70 E-value=2.3 Score=22.47 Aligned_cols=31 Identities=6% Similarity=0.079 Sum_probs=21.0
Q ss_pred ecCCceeEEEecCCCCcEEEEEeCC--CcEEEE
Q 018293 258 AHDKAVCTISYNPLVPNLLATGSTD--KMVKLW 288 (358)
Q Consensus 258 ~~~~~i~~i~~~~~~~~~l~~~~~d--g~i~i~ 288 (358)
.....-....|+|||..++.+...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667899999996666777777 666665
No 485
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.41 E-value=5.7 Score=29.99 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.3
Q ss_pred CceeEEEecCCC-----CcEEEEEeCCCcEEEEecCC
Q 018293 261 KAVCTISYNPLV-----PNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 261 ~~i~~i~~~~~~-----~~~l~~~~~dg~i~i~d~~~ 292 (358)
..+.+++|+|.| .-+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 35888899999999998764
No 486
>PRK13684 Ycf48-like protein; Provisional
Probab=87.88 E-value=16 Score=31.11 Aligned_cols=150 Identities=8% Similarity=0.020 Sum_probs=77.9
Q ss_pred cccEEEEecCCCCCcEEEEEEcCCeEEE-EECCCCc-eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293 122 TDSVLGLAWNKEFRNILASASADKQVKI-WDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199 (358)
Q Consensus 122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~i-wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 199 (358)
...+.++.+.|+ +.++++ +..|.+.. +| ..++ -......-...++++.+.+++ ..+++ +..|.+++-....+.
T Consensus 172 ~g~~~~i~~~~~-g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCC-CeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCC
Confidence 457889999988 545544 44565443 22 1222 112222344678899999987 65554 456766542222222
Q ss_pred Cccc-ee---eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCC
Q 018293 200 HSGF-KW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV 272 (358)
Q Consensus 200 ~~~~-~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~ 272 (358)
.-.. .. .....+..+.+.++ +. +++.+.+|.+.. ....+ ....... .-......+.+..++
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~-~~-~~~~G~~G~v~~-S~d~G---------~tW~~~~~~~~~~~~~~~~~~~~~~ 314 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTP-GE-IWAGGGNGTLLV-SKDGG---------KTWEKDPVGEEVPSNFYKIVFLDPE 314 (334)
T ss_pred ccccccCCccccccceeeEEEcCC-CC-EEEEcCCCeEEE-eCCCC---------CCCeECCcCCCCCcceEEEEEeCCC
Confidence 1110 11 11234678888884 33 445556776543 33333 1122211 112356777777655
Q ss_pred CcEEEEEeCCCcEEEEec
Q 018293 273 PNLLATGSTDKMVKLWDL 290 (358)
Q Consensus 273 ~~~l~~~~~dg~i~i~d~ 290 (358)
..++ .+..|.|-.|+-
T Consensus 315 -~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 315 -KGFV-LGQRGVLLRYVG 330 (334)
T ss_pred -ceEE-ECCCceEEEecC
Confidence 4544 455788776653
No 487
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.69 E-value=9.8 Score=35.46 Aligned_cols=185 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293 152 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 231 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 231 (358)
+++.++....+ ....++++.-+|.+ +.++.+..||+|++|+........ ......+-..+.|...+ +++.+.|.
T Consensus 2 ikt~~~s~~~k-~~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg---l~~~tsdr 75 (1636)
T KOG3616|consen 2 IKTFDCSRDPK-EDEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG---LVTATSDR 75 (1636)
T ss_pred CccccccCCcc-ccceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc---eEEEeccc
Q ss_pred eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC------------------------CcEEE
Q 018293 232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD------------------------KMVKL 287 (358)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------------------------g~i~i 287 (358)
.+.-|.-..--. +...--........++...|...+.+-+-+.. ..|.+
T Consensus 76 r~la~~~dgvvq-------qqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvil 148 (1636)
T KOG3616|consen 76 RALAWKEDGVVQ-------QQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVIL 148 (1636)
T ss_pred hhheeeccCcch-------hhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeee
Q ss_pred EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCCCC
Q 018293 288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKK 353 (358)
Q Consensus 288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 353 (358)
-|+.++. .........-.|..+......+| ++ +-...+|.+=|+.+.....-.+....+..+
T Consensus 149 kdlsn~t--rt~l~s~~g~aidelkilgkdry-li-~~ts~siii~d~es~rfsei~wqgsgg~ek 210 (1636)
T KOG3616|consen 149 KDLSNDT--RTNLISHKGLAIDELKILGKDRY-LI-AHTSESIIIADLESNRFSEIAWQGSGGHEK 210 (1636)
T ss_pred ecccCCc--eEeeeecCCcchhhhhhccccce-EE-eeccccEEEeecccchhhhhhcccCCCcce
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.67 E-value=9.4 Score=27.17 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=68.2
Q ss_pred EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC----CCCcEEEEEeCCCcEEEEe
Q 018293 214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWD 289 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~l~~~~~dg~i~i~d 289 (358)
-.|....+ .|++++..|+|.+++.......... ....+..+ .-...|++++-.+ ++...|+.|+. ..+..||
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 34555333 7888889999999988765322211 11222333 3456677776554 23357777764 5688999
Q ss_pred cCCCCceeeEecCCCCceeEEEEEc---C-CCCeEEEEEccCCeEEEEEccCCCc
Q 018293 290 LSNNQPSCIASRNPKAGAVFSVAFS---E-DSPFVLAIGGSKGKLEIWDTLSDAG 340 (358)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~l~~~~~dg~i~vw~~~~~~~ 340 (358)
+..+.-...... ...|+++.+- . +.+ +++ .+.+-.|.=||....+.
T Consensus 80 V~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 80 VENNSDLFYKEV---PDGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cccCchhhhhhC---ccceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEE
Confidence 998874333333 2456666663 2 233 444 44456777777655443
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.61 E-value=22 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=23.7
Q ss_pred ceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293 306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 306 ~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 337 (358)
..|.+++..+..+ ++++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 3488899988887 688899999999999975
No 490
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=11 Score=36.10 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=28.2
Q ss_pred CCcccceeeecCCccccCCCce----EEecCCCCeEEEEEcc
Q 018293 46 PAFPLCMAWLDCPLKDREKGNF----MAVGSMEPAIEIWDLD 83 (358)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~~----l~~g~~dg~i~vw~~~ 83 (358)
...++.+.|++.+ .-+.+|.. +|+|..+|.|++|.-.
T Consensus 78 ~e~ITa~~clpl~-n~s~dgr~dwtcVavGt~sGyV~FYTe~ 118 (1244)
T KOG2727|consen 78 AESITAIECLPLD-NVSHDGRVDWTCVAVGTSSGYVLFYTET 118 (1244)
T ss_pred cceeeeeeeeecc-ccccccccceeEEEEecccceEEEEecc
Confidence 3445677888876 44667766 9999999999999865
No 491
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.60 E-value=40 Score=32.61 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=96.7
Q ss_pred ccccceeeEEEc---C--CCCcEEEEEeCCCcEEEEEcccCCC------c---------cc---eeeecCCeeeEEEcCC
Q 018293 163 HHTDKVQAVAWN---H--HSPQILLSGSFDRSVVMKDARISTH------S---------GF---KWAVAADVESLAWDPH 219 (358)
Q Consensus 163 ~~~~~v~~~~~~---~--~~~~~l~~~~~dg~i~i~d~~~~~~------~---------~~---~~~~~~~i~~~~~~~~ 219 (358)
....+|..++|. . +.....+..-....+.|+...-.+. . .. ......+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 2 1111244444556667766221111 0 00 0012346788999999
Q ss_pred CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCc----cEEE---eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293 220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS----SFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292 (358)
Q Consensus 220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~ 292 (358)
....||+-...|...|||+.......... ... ...+ .........+.|.++. +.|+.++ ...+.++|+.+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLMLIDFES 233 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceEEEECCC
Confidence 88899999999999999992221111000 000 0111 0011334578898876 5566555 45689999998
Q ss_pred CCceeeEecCCCCceeEEEEEcCC--CCeEEEEEccCCeEEEEEccC
Q 018293 293 NQPSCIASRNPKAGAVFSVAFSED--SPFVLAIGGSKGKLEIWDTLS 337 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vw~~~~ 337 (358)
...............|..+.-+|. +. +++.- ...|...++..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~-~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSH-VFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccce-EEEEe--cCeEEEEEccC
Confidence 764332222334567888888887 33 33332 25687888876
No 492
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.51 E-value=21 Score=29.34 Aligned_cols=229 Identities=16% Similarity=0.088 Sum_probs=117.9
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 141 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 141 (358)
.-.|++..++..|.-+.+.|+.+..... +...+......-..++.| +++-..+
T Consensus 135 ~vsGn~aYVadlddgfLivdvsdpssP~------------------------lagrya~~~~d~~~v~IS---Gn~AYvA 187 (370)
T COG5276 135 YVSGNYAYVADLDDGFLIVDVSDPSSPQ------------------------LAGRYALPGGDTHDVAIS---GNYAYVA 187 (370)
T ss_pred EecCCEEEEeeccCcEEEEECCCCCCce------------------------eeeeeccCCCCceeEEEe---cCeEEEE
Confidence 4578888888856556688887533221 111122222333556666 4467778
Q ss_pred EcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-ecCCeee---EE
Q 018293 142 SADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVES---LA 215 (358)
Q Consensus 142 ~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~---~~ 215 (358)
..|+-+.+-|+........+. .....+.++..+++. . ...-.+--+.+-|....+.....-. ....+.+ +.
T Consensus 188 ~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~--y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~ 264 (370)
T COG5276 188 WRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-A--YLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVP 264 (370)
T ss_pred EeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-e--EEEEcccceEEEecCCCCCceEeeccccCCccccccee
Confidence 889999999997653222121 122357777777654 3 3333345567777776664442221 1122222 23
Q ss_pred EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 295 (358)
. .+.+......+.-+.+-|+.+.... .....+......-..+..+. +++..+..+ ...+-+....+
T Consensus 265 V---s~~~~Yvadga~gl~~idisnp~sp------fl~ss~~t~g~~a~gi~ay~---~y~yiadkn-~g~vV~~s~~s- 330 (370)
T COG5276 265 V---SGEYAYVADGAKGLPIIDISNPPSP------FLSSSLDTAGYQAAGIRAYG---NYNYIADKN-TGAVVDASPPS- 330 (370)
T ss_pred c---ccceeeeeccccCceeEeccCCCCC------chhccccCCCccccceEEec---CeeEeccCC-ceEEEeCCChh-
Confidence 3 2346666666666777787765221 11111211122334444442 444444433 44455554433
Q ss_pred eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336 (358)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 336 (358)
..-...+....+.+...+-+.+ ++.+...++.+.+|+..
T Consensus 331 -~m~~~~g~~ti~~s~~v~~~~q-~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 331 -MMDKRPGRPTIGQSCDVSVDTQ-IIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -hcccccCcceEeeecceEEEee-EEEEeecCCCEEEEEec
Confidence 1222222223344444444555 46677888889998853
No 493
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=84.32 E-value=11 Score=36.04 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=81.6
Q ss_pred EeCCCcEEEEEcccCCCccceeeecCCeeeEEE-cCCC-------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE
Q 018293 184 GSFDRSVVMKDARISTHSGFKWAVAADVESLAW-DPHA-------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255 (358)
Q Consensus 184 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~-------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 255 (358)
-+.|+.+.+|+................|..+.. -|.. .++++++ ....+.++-+.......+......-..
T Consensus 98 iT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~ 176 (1263)
T COG5308 98 ITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLV 176 (1263)
T ss_pred EEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceE
Confidence 345889999999876554433333444444432 2211 1122222 123344443332211000000000011
Q ss_pred EeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC----------------------ceeeEecCCCCceeEEEEE
Q 018293 256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----------------------PSCIASRNPKAGAVFSVAF 313 (358)
Q Consensus 256 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------~~~~~~~~~~~~~v~~~~~ 313 (358)
.....-.|.|+.-+.+| +.+++|-.| +.+|.+.-.. ......+..|...|..++.
T Consensus 177 vsvqGinV~civs~e~G-rIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v 253 (1263)
T COG5308 177 VSVQGINVRCIVSEEDG-RIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV 253 (1263)
T ss_pred EeccCceeEEEEeccCC-cEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence 22233568888888877 888888777 6677653210 0011223345667888888
Q ss_pred cCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293 314 SEDSPFVLAIGGSKGKLEIWDTLSDAGIS 342 (358)
Q Consensus 314 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 342 (358)
..... ++.+-.....|+-|.+.......
T Consensus 254 DqsRg-~ly~Lr~kS~Vray~itkngl~g 281 (1263)
T COG5308 254 DQSRG-LLYVLRKKSAVRAYSITKNGLVG 281 (1263)
T ss_pred ccccc-ceeeecccceeeeEeeecccccc
Confidence 77666 68888888899999887655443
No 494
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.30 E-value=11 Score=32.89 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=61.6
Q ss_pred CCcEEEEEEcCCeEEEE-ECCCC-c----eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293 134 FRNILASASADKQVKIW-DVAAG-K----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 207 (358)
Q Consensus 134 ~~~~l~s~~~dg~v~iw-d~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 207 (358)
|+.-+..+..||.|.-| |++.+ . .++.++-...++..+.-.... +-+++-+..|++..+.....+... ....
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL-~~~~ 356 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLL-FERA 356 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCccee-hhhh
Confidence 35667788889988877 44332 1 122222222333333222222 557778888998888766555443 2223
Q ss_pred cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
-..+.-++++|++. ++++- ..|.++++.+.+.
T Consensus 357 ~~~~~~~~~Sp~~~-~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 357 YQAPQLVAMSPNQA-YLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred hcCcceeeeCcccc-hheee-cCCceEEEEecCC
Confidence 34677789999654 44443 5678999988776
No 495
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.85 E-value=3.3 Score=20.77 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=20.9
Q ss_pred EEEEEEcCCeEEEEECCCCceeeee
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTL 161 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~ 161 (358)
.++.++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6778889999999999999876543
No 496
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.72 E-value=28 Score=30.11 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=58.2
Q ss_pred EEEEEEcCCeEEEEECCCCceeeeecccc--cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC-Ceee
Q 018293 137 ILASASADKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-DVES 213 (358)
Q Consensus 137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~ 213 (358)
.++.+..+|.+.-.|.++++.+....... ..+..-.+..+| .++.++.++.+..+|.++++..-....... .+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 56667888989999998888665433221 223332333355 478888899888888876665432222220 1111
Q ss_pred EEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 214 LAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
-..- ....+..++.+|.+...|..++
T Consensus 148 ~~v~--~~~~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 148 PPVV--GDGTVYVGTDDGHLYALNADTG 173 (370)
T ss_pred CcEE--cCcEEEEecCCCeEEEEEccCC
Confidence 1111 1224455556788888887776
No 497
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.80 E-value=31 Score=29.86 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=103.6
Q ss_pred cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc---EEEEecCCCCCcE-
Q 018293 62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS---VLGLAWNKEFRNI- 137 (358)
Q Consensus 62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~- 137 (358)
+|...+++....++-+.+||++.... +... .+.-+. ...+.+. +...
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~l-q~~~--------------------------~Gr~NNVDvrygf~l~--g~~vD 115 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKEL-QSLP--------------------------VGRPNNVDVRYGFPLN--GKTVD 115 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EE-EEE---------------------------SS-EEEEEEEEEEEET--TEEEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEE-Eeec--------------------------CCCcceeeeecceecC--CceEE
Confidence 45667788888889999999974221 1100 011111 2222332 2222
Q ss_pred EEEEE-cC---CeEEEEECC--CCceeeeecc-------cccceeeEEE--cC-CCCcEEEEEeCCCcEEEEEcccCCC-
Q 018293 138 LASAS-AD---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARISTH- 200 (358)
Q Consensus 138 l~s~~-~d---g~v~iwd~~--~~~~~~~~~~-------~~~~v~~~~~--~~-~~~~~l~~~~~dg~i~i~d~~~~~~- 200 (358)
|+.++ .+ .+|++|.+. ++. +..+.. ....+..+|+ ++ ++..+++....+|.+.-|.+.....
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 33443 32 469999775 333 333221 1134566666 33 3545777788999999888864321
Q ss_pred -----ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecC--C
Q 018293 201 -----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--L 271 (358)
Q Consensus 201 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~--~ 271 (358)
....+...+.+..|..+.. ...++.+-++--|.-|+.+...... ...+....+ ....+-.|++.. +
T Consensus 195 ~v~~~lVR~f~~~sQ~EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~ 269 (381)
T PF02333_consen 195 KVSATLVREFKVGSQPEGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSD 269 (381)
T ss_dssp SEEEEEEEEEE-SS-EEEEEEETT-TTEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CC
T ss_pred cEeeEEEEEecCCCcceEEEEecc-cCCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCC
Confidence 1123445677888888874 4588889888878777776432110 111212211 245677777753 4
Q ss_pred CCcEEEEEe-CCCcEEEEecCCC
Q 018293 272 VPNLLATGS-TDKMVKLWDLSNN 293 (358)
Q Consensus 272 ~~~~l~~~~-~dg~i~i~d~~~~ 293 (358)
+..||++.+ .+++..||+.+..
T Consensus 270 g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 270 GKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp C-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCeEEEEEcCCCCeEEEEecCCC
Confidence 444555554 4778999998764
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.91 E-value=37 Score=30.25 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=34.9
Q ss_pred cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-----e-e-eecCCeeeEEEcCC
Q 018293 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-----K-W-AVAADVESLAWDPH 219 (358)
Q Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~-~-~~~~~i~~~~~~~~ 219 (358)
...+.|+|.|++ ++|++--..|.|++++......... . . ........++++|+
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 456889999998 6665554469999997654322110 1 1 12566889999985
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.25 E-value=40 Score=32.01 Aligned_cols=97 Identities=11% Similarity=0.187 Sum_probs=52.9
Q ss_pred eeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293 169 QAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241 (358)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 241 (358)
..+.|-|+| ..+++-..|| .|.++..+.-+.-. ...+....+...+|+-.. .+.+....+.+++|-..+-
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s--~vlav~~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS--TVLAVAEGNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH--HHHHHhhcceEEEEEccce
Confidence 347899999 7777766554 36666544332221 123344556677776532 2223335677899987664
Q ss_pred CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~ 277 (358)
. --......-..+.-+.|+|...+.++
T Consensus 327 h---------WYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 327 H---------WYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred E---------EEEEEeecCCCcceeeeccccCcEEE
Confidence 1 11122222344666778875544443
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.20 E-value=48 Score=31.03 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEec-CCCCeEEEE
Q 018293 2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG-SMEPAIEIW 80 (358)
Q Consensus 2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~vw 80 (358)
.++|+-+.+-.|-+. +.+.-|+.+... .+.-.+..+....+.|+.-... +...++.++| ...+.-++-
T Consensus 34 ~~s~~sn~IdiGIS~---S~ISsYIi~PTP----KLiwsypi~pt~iV~~~dV~~~----~~~~~~~~~glt~rKk~~ll 102 (670)
T PF10395_consen 34 DFSPDSNQIDIGISG---SAISSYIIKPTP----KLIWSYPISPTTIVECCDVLEK----SDGKKLYCVGLTERKKFKLL 102 (670)
T ss_pred ccCCCCceEEEEecc---chhhheecCCCc----ceeEeeccCcCceEEEEEeEec----CCCcEEEEEEEeeCCeeEEE
Q ss_pred Ecccc----------cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293 81 DLDVI----------DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 150 (358)
Q Consensus 81 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 150 (358)
.+... .......... -.+.|-.+.|.++ +..+++...+|.|.+|
T Consensus 103 ~i~~~~~~~~~~~~~~e~~~~~~~k-------------------------l~~kvv~Ik~~~~-~~~I~vvl~nG~i~~~ 156 (670)
T PF10395_consen 103 LIERKVGSTEDGTVNSETTNEFELK-------------------------LDDKVVGIKFSSD-GKIIYVVLENGSIQIY 156 (670)
T ss_pred EEEccCccccccccCccccceEEEE-------------------------cccceEEEEEecC-CCEEEEEEcCCcEEEE
Q ss_pred EC---------CCCceeeeecccccceeeEEEcCCCCcEEEEEe---CCCcEEEEEc--ccCCCccce--eeecCCeeeE
Q 018293 151 DV---------AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDA--RISTHSGFK--WAVAADVESL 214 (358)
Q Consensus 151 d~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~--~~~~~~~~~--~~~~~~i~~~ 214 (358)
|. .....-..--.+..-|.....-.....+++.+. ..-..+++.+ ......... ..........
T Consensus 157 d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s 236 (670)
T PF10395_consen 157 DFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDS 236 (670)
T ss_pred eccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccc
Q ss_pred EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293 215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL 287 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i 287 (358)
.|+-..+.+..- .++.|.+|++..- +....+.-. ...|.-...+|+. +.-+.+..|++
T Consensus 237 ~f~Y~~G~LY~l--~~~~i~~ysip~f---------~~~~tI~l~~ii~~~~~~~vSl~~~s~nR----vLLs~~nkIyL 301 (670)
T PF10395_consen 237 KFCYQFGKLYQL--SKKTISSYSIPNF---------QIQKTISLPSIIDKESDDLVSLKPPSPNR----VLLSVNNKIYL 301 (670)
T ss_pred eEEEeCCEEEEE--eCCEEEEEEcCCc---------eEEEEEEechhhccccccceEeecCCCCe----EEEEcCCEEEE
Q ss_pred Eec
Q 018293 288 WDL 290 (358)
Q Consensus 288 ~d~ 290 (358)
.|+
T Consensus 302 ld~ 304 (670)
T PF10395_consen 302 LDL 304 (670)
T ss_pred Eee
Done!