BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018294
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/357 (87%), Positives = 335/357 (93%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM+AY EMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN LL+EFYQTTLKALEEAKNE
Sbjct: 82 MMEAYTEMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLKALEEAKNE 141
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTNLKLC IWFD+GEY RM+KILKELHKSCQ+EDGTDDQKKGSQLLEVYAIEIQ+Y
Sbjct: 142 RLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQKEDGTDDQKKGSQLLEVYAIEIQIY 201
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
TETK+NKKLKQLY KALAIKSAIPHPRIMGIIRECGGKMHMAERQW +AATDFFEAFKNY
Sbjct: 202 TETKDNKKLKQLYHKALAIKSAIPHPRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNY 261
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE
Sbjct: 262 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 321
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FE+ILKSNR+TIMDDPFIRNY+EDLLK VRTQVLLKLIKPYT+I IPFISKELNVPE DV
Sbjct: 322 FERILKSNRRTIMDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDV 381
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRV 357
+LLVSLILD+RIDGHID++NR L RGD G K + A+DKWNSQL+SL +++RV
Sbjct: 382 TELLVSLILDSRIDGHIDEMNRYLLRGDSGNGRKLHKAVDKWNSQLKSLSSNITSRV 438
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/358 (67%), Positives = 299/358 (83%), Gaps = 2/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM+ Y+++LTYI+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+
Sbjct: 88 MMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKND 145
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMY
Sbjct: 146 RLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 205
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
T KNNKKLK LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNY
Sbjct: 206 TAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 265
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DE+G+ RR CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I E
Sbjct: 266 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITE 325
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FEKILK+N IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DV
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 358
E LLV ILDN I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 386 ESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/358 (67%), Positives = 299/358 (83%), Gaps = 2/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM+ Y+++LTYI+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+
Sbjct: 88 MMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKND 145
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMY
Sbjct: 146 RLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 205
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
T KNNKKLK LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNY
Sbjct: 206 TAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 265
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DE+G+ RR CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I E
Sbjct: 266 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITE 325
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FEKILK+N IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DV
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 358
E LLV ILDN I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 386 ESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/358 (67%), Positives = 299/358 (83%), Gaps = 2/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM+ Y+++LTYI+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+
Sbjct: 88 MMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKND 145
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMY
Sbjct: 146 RLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 205
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
T KNNKKLK LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNY
Sbjct: 206 TAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 265
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DE+G+ RR CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I E
Sbjct: 266 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITE 325
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FEKILK+N IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DV
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 358
E LLV ILDN I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 386 ESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/358 (67%), Positives = 296/358 (82%), Gaps = 1/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
M++++++ L Y KS+ + NY EK IN+++D VS S + ++++ + TLK+L + KNE
Sbjct: 90 MLESFKKFLPYTKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNE 149
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
R+WF+TNLKL K+ F+ EYGR++KIL++LHKSC+ EDGTDDQKKGSQL+++YA+EIQMY
Sbjct: 150 RVWFRTNLKLAKLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMY 209
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
TETKNNKKLK LY+KAL IKSAIPHPRIMGIIRECGGKMHMAE++W A TDFFEAFKNY
Sbjct: 210 TETKNNKKLKDLYKKALEIKSAIPHPRIMGIIRECGGKMHMAEKEWEKAHTDFFEAFKNY 269
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DEAGN RRIQCLKYLVLA MLM S +NPFD EAKPYKNDP+ILAMTNL+ AY++N+I
Sbjct: 270 DEAGNSRRIQCLKYLVLACMLMLSTINPFDSTEAKPYKNDPDILAMTNLVMAYEKNDIYA 329
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FEKILK NRKTIMDDPFIR YIEDLL+N+RTQVLLKL+KPYTRIRI FISKELN+P DV
Sbjct: 330 FEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDV 389
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGD-RSKGMKKYTAIDKWNSQLRSLYQTVSNRV 357
E LLVSLILDN+I G IDQVN+ LE +S KYT+I KW +Q+ L ++N++
Sbjct: 390 ESLLVSLILDNKIRGSIDQVNQQLELDTAKSSAYWKYTSIHKWANQIGQLNGGINNKL 447
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/358 (67%), Positives = 298/358 (83%), Gaps = 2/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM+ Y+++LTYI+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL AL++AKN+
Sbjct: 86 MMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLDALKDAKND 143
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++ + EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMY
Sbjct: 144 RLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 203
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
T KNNKKLK LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNY
Sbjct: 204 TAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 263
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DE+G+ RR CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I E
Sbjct: 264 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITE 323
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FEKILK+N IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DV
Sbjct: 324 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 383
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 358
E LLV ILDN I G IDQVN+LLE + +G +YTA+DKW +QL SL Q V ++++
Sbjct: 384 ESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 441
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/358 (66%), Positives = 300/358 (83%), Gaps = 2/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM+ Y+++LTYI+SAVTRNYSEK IN+I+D++S S+ LL+EFY+TTL+AL++AKN+
Sbjct: 88 MMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS--TSKQMDLLQEFYETTLEALKDAKND 145
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++ + E+G++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMY
Sbjct: 146 RLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 205
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
T KNNKKLK LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNY
Sbjct: 206 TAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 265
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DE+G+ RR CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I E
Sbjct: 266 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITE 325
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FEKILK+N IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+ DV
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 358
E LLV ILDN I+G IDQVN+LLE + +G +YTA+DKW +QL SL Q + ++++
Sbjct: 386 ESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAIVSKLA 443
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/358 (62%), Positives = 287/358 (80%), Gaps = 2/358 (0%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
MM Y+++LTYIKSAVTRN+SEK IN+I+D++S S+N +LL+ FY+TTL AL +AKN+
Sbjct: 89 MMVRYKQLLTYIKSAVTRNHSEKSINSILDYIS--TSKNMALLQNFYETTLDALRDAKND 146
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++FD ++ ++ KILK+LH+SCQ +DG DD KKG+QLLE+YA+EIQMY
Sbjct: 147 RLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 206
Query: 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180
T KNNKKLK LY+++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TDFFEAFKNY
Sbjct: 207 TVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 266
Query: 181 DEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
DE+G+ RR CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL+ +YQ N+I E
Sbjct: 267 DESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
FE IL+ +R IM D FIR +IEDLL+N+RTQVL+KLI+PY I IPFI+ LN+ +V
Sbjct: 327 FETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEV 386
Query: 301 EQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNRVS 358
E LLVS ILD+ I G IDQVN++L+ + +Y A++KW++Q++SL V +++
Sbjct: 387 ESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA 444
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/336 (57%), Positives = 267/336 (79%), Gaps = 5/336 (1%)
Query: 1 MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 60
M++ YR++LTYIKSAVT+NYSEK IN I+D++S S+ LL+ FY+TTL AL++AKNE
Sbjct: 85 MLEYYRQLLTYIKSAVTKNYSEKSINAILDYIS--TSRQMDLLQHFYETTLDALKDAKNE 142
Query: 61 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 120
RLWFKTN KL K++FD+ E+ ++ KI+K+L SC+ E G +DQ+KG+QLLE+YA+EIQMY
Sbjct: 143 RLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQGEEDQRKGTQLLEIYALEIQMY 202
Query: 121 TETKNNKKLKQLYQ---KALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 177
TE KNNK LK +Y+ +A+ KSAIPHP I+G IRECGGKMH+ + ++ DA TDFFEAF
Sbjct: 203 TEQKNNKALKWVYELATQAIHTKSAIPHPLILGTIRECGGKMHLRDGRFLDAHTDFFEAF 262
Query: 178 KNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNE 237
KNYDE+G+ RR CLKYLVLANML++S++NPFD QEAKP+KN+PEI+AMT ++ AYQ N+
Sbjct: 263 KNYDESGSPRRTTCLKYLVLANMLIKSDINPFDSQEAKPFKNEPEIVAMTQMVQAYQDND 322
Query: 238 IIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPE 297
I FE+I+ +++ +IM DPFIR + E+L+ N+RTQVLL+LI+PYT +RI ++S++L V +
Sbjct: 323 IQAFEQIMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKVSQ 382
Query: 298 KDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM 333
K+V LLV ILD+ ++ I++ + ++E K M
Sbjct: 383 KEVIHLLVDAILDDGLEAKINEESGMIEMPKNKKKM 418
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 265/358 (74%), Gaps = 12/358 (3%)
Query: 2 MDAYREMLTYIKSAVTRNYSEKCINNIMDFVS-GSASQN-FSLLREFYQTTLKALEEAKN 59
++ YRE+LTY+KSAVTRNYSEK INN++D++ GS + + + EFY TL + + N
Sbjct: 90 VEHYRELLTYVKSAVTRNYSEKSINNMLDYIEKGSDDEKAYQCMEEFYSLTLNSFQNTNN 149
Query: 60 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 119
ERLW KTN+KL ++W + EYG++SK ++ELH++CQREDG+DD KG+ LLE+YA+EIQM
Sbjct: 150 ERLWLKTNIKLARLWLERREYGQLSKKVRELHRACQREDGSDDPSKGTYLLELYALEIQM 209
Query: 120 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179
Y ETKNNK+LK LYQ+AL ++SA+PHP+IMGIIRECGGKMHM+E W +A +DFFE+F+N
Sbjct: 210 YAETKNNKRLKALYQRALRVRSAVPHPKIMGIIRECGGKMHMSEENWEEAQSDFFESFRN 269
Query: 180 YDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEII 239
YDEAG+ +RIQ LKYLVL MLM+S++NPF QE KPYK DP I AMT+L+ A+QR++I
Sbjct: 270 YDEAGSMQRIQVLKYLVLTTMLMKSDINPFHSQETKPYKTDPRISAMTDLVDAFQRDDIH 329
Query: 240 EFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 299
+E++L N ++ DPFI I+++ +N+RT+ +LKLI PYTR + FISK + + +
Sbjct: 330 AYEEVLSKN-PDVLADPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTE 388
Query: 300 VEQLLVSLILDNRIDGHIDQVNRLLERG----DRSKGMKKYTAIDKWNSQLRSLYQTV 353
+ +L LILD +++ IDQ E G + + +++ ++++WN LR+L+Q
Sbjct: 389 AQDILSFLILDKKLNAKIDQ-----ESGTVVVESASDVERLRSVEEWNESLRTLWQVT 441
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/323 (51%), Positives = 240/323 (74%), Gaps = 3/323 (0%)
Query: 5 YREMLTYIKSAVTRNYSEKCINNIMDFVSGS--ASQNFSLLREFYQTTLKALEEAKNERL 62
Y E+LTY+KSAVTRNYSEK I+N+++++ + + +FY TL+ + NERL
Sbjct: 91 YEELLTYVKSAVTRNYSEKSIDNMLNYIEKGYDDPKAVQCIEKFYSLTLQCFQSTNNERL 150
Query: 63 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE 122
W KTN+KL ++ D +Y +++ L+ELH +C++ DGTDD KG+ LE+YA+EIQMY+E
Sbjct: 151 WLKTNIKLARLLLDRKDYHAVARKLRELHNACRKSDGTDDPSKGTYSLEIYALEIQMYSE 210
Query: 123 TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 182
T+NN +LK LYQKAL ++SA+PHP+I G+IRECGGKMHM+E W +A +DFFEAF+NYDE
Sbjct: 211 TRNNNQLKVLYQKALKVRSAVPHPKIQGVIRECGGKMHMSEENWKEAQSDFFEAFRNYDE 270
Query: 183 AGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFE 242
AG+ RRIQ LKYL+L MLM+S++NPFD QE KPY+NDP I AMT L+ AYQR++I +E
Sbjct: 271 AGDLRRIQVLKYLLLTTMLMKSDINPFDSQEMKPYRNDPRIFAMTELVDAYQRDDIYRYE 330
Query: 243 KILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQ 302
+L+ N ++ DPFI I+++ +N+RT+ ++KLI PYTR+RI ++++ L + E +V
Sbjct: 331 DVLQKN-TDLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVMD 389
Query: 303 LLVSLILDNRIDGHIDQVNRLLE 325
+L LI+D R+ G ID+ +LE
Sbjct: 390 ILSFLIVDGRVKGRIDEHKGVLE 412
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 335 bits (858), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 234/326 (71%), Gaps = 4/326 (1%)
Query: 1 MMDAYREMLTYIK-SAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 59
M+ +Y+ +L Y ++T+NYSEK I NI+++ S+ +N L +FY T KAL+ N
Sbjct: 88 MLQSYQRLLGYTNWLSITKNYSEKSIYNIVEY--ASSCENTEFLEKFYDVTTKALQNLNN 145
Query: 60 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQ 118
ERL K + + + Y + +L+++H+ E+ + DQ +G+ LLE+Y++EIQ
Sbjct: 146 ERLMLKVLMHVARFLLTQKNYHKFKYLLRQMHELLSDENNSVADQNRGTHLLELYSLEIQ 205
Query: 119 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178
MY++ ++NK+LK+LYQ +L +K+AIPHPRIMGIIRECGGKMHM E QW++A T+FFE+FK
Sbjct: 206 MYSDIEDNKRLKELYQSSLRVKTAIPHPRIMGIIRECGGKMHMQENQWSEAQTNFFESFK 265
Query: 179 NYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEI 238
+YDEAG+ RI+ LKYLVLANML ESE+NPFD E +PYK++P I+AMT L+ AYQ +I
Sbjct: 266 SYDEAGSSDRIRVLKYLVLANMLSESEINPFDSPETQPYKDNPHIIAMTKLVEAYQIRDI 325
Query: 239 IEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEK 298
E+IL++ + I+DD FIR Y++ +L ++R+QVL++L+KPYT +++ ++K+L V
Sbjct: 326 TAVERILQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSIS 385
Query: 299 DVEQLLVSLILDNRIDGHIDQVNRLL 324
+EQ LV LI+D R++G ID VN +
Sbjct: 386 IIEQALVGLIIDERVNGKIDMVNEVF 411
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 168/350 (48%), Gaps = 38/350 (10%)
Query: 8 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNER 61
+L Y++ +++++ + + + +++D + + Q L L+ +E AK+E+
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEK 121
Query: 62 LWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 114
F +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 115 IEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAAT 171
+E + Y N K + A +AI P P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYS 230
Query: 172 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTN 228
F+EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+
Sbjct: 231 YFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKC 289
Query: 229 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF 288
+ A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I
Sbjct: 290 VAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEH 349
Query: 289 ISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
IS + + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 350 ISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 168/350 (48%), Gaps = 38/350 (10%)
Query: 8 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNER 61
+L Y++ +++++ + + + +++D + + Q L L+ +E AK+E+
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEK 121
Query: 62 LWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 114
F +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 115 IEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAAT 171
+E + Y N K + A +AI P P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYS 230
Query: 172 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTN 228
F+EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+
Sbjct: 231 YFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKC 289
Query: 229 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF 288
+ A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I
Sbjct: 290 VAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEH 349
Query: 289 ISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
IS + + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 350 ISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 168/350 (48%), Gaps = 38/350 (10%)
Query: 8 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNER 61
+L Y++ +++++ + + + +++D + + Q L L+ +E AK+E+
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEK 121
Query: 62 LWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 114
F +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 115 IEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAAT 171
+E + Y N K + A +AI P P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYS 230
Query: 172 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTN 228
F+EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+
Sbjct: 231 YFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKC 289
Query: 229 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF 288
+ A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I
Sbjct: 290 VAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEH 349
Query: 289 ISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
IS + + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 350 ISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 168/350 (48%), Gaps = 38/350 (10%)
Query: 8 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNER 61
+L Y++ +++++ + + + +++D + + Q L L+ +E AK+E+
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKSEK 121
Query: 62 LWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 114
F +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 115 IEIQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAE-RQWADAAT 171
+E + Y N K + A +AI P P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQATLDMQSGIIHAAEEKDWKTAYS 230
Query: 172 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTN 228
F+EAF+ YD + + I LKY++L +++ + +V G+ A Y + A+
Sbjct: 231 YFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKC 289
Query: 229 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF 288
+ A + + +FEK L R + DDP I ++ L N+ Q L+++I+P++R++I
Sbjct: 290 VAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEH 349
Query: 289 ISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
IS + + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 350 ISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 169/347 (48%), Gaps = 32/347 (9%)
Query: 8 MLTYIK---SAVTRNYSEKCINNIMD-FVSGSASQNFSLLREFYQTTLKALEEAKNERLW 63
+L Y++ +++++ + + + +++D F+ A+ + + L+ +E AK+E+
Sbjct: 68 LLKYVRPFLNSISKAKAARLVRSLLDMFLDMEAATG-----QEVELCLECIEWAKSEKRT 122
Query: 64 F---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 116
F +L ++FD Y S++L+EL K DD+ + L+E+ +E
Sbjct: 123 FLRQALEARLVSLYFDTKRYQEALQLGSQLLQELKK-------MDDK---ALLVELQLLE 172
Query: 117 IQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAE-RQWADAATDFF 174
+ Y N K + A +AI P++ + G +H AE + W A + F+
Sbjct: 173 SKTYHALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFY 232
Query: 175 EAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP---FDGQEAKPYKNDPEILAMTNLIA 231
EAF+ YD + R I LKY++L +++ S + G+ A Y + A+ +
Sbjct: 233 EAFEGYDSIDSPRAITALKYMLLCKIMLNSPEDVQSLISGKLALRYAGR-QTEALKCVAQ 291
Query: 232 AYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISK 291
A + + +FEK L + + DDP I ++ L N+ Q L+++I+P++R++I IS+
Sbjct: 292 ASKNRSLADFEKALTEYKAELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISE 351
Query: 292 ELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
+ + + DVE+ L +ILD + G +DQ +L D K Y A
Sbjct: 352 LIKLSKGDVERKLSQMILDQKFHGILDQGEGVLIVFDEPPVDKTYEA 398
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 23/281 (8%)
Query: 51 LKALEEAKNERLWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQ 103
L+ +E AK E+ F +L ++FD Y S++L+EL K DD+
Sbjct: 111 LECIEWAKAEKRTFLRQALEARLISLYFDTKRYQEALQLESQLLQELKK-------MDDK 163
Query: 104 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMA 162
+ L+EV +E + Y N K + A +AI P++ + G +H A
Sbjct: 164 ---ALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAA 220
Query: 163 E-RQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME--SEVNPF-DGQEAKPYK 218
E + W A + FFEAF+ YD + R + LKY++L +++ EV G+ Y
Sbjct: 221 EEKDWKTAYSYFFEAFEGYDSIDSPRAVTALKYMLLCKIMLSLPEEVQALISGKLGLRYA 280
Query: 219 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI 278
+ A+ + A + + +FEK L K + DDP I ++ L N+ Q L+++I
Sbjct: 281 GR-QTDALKCIAQASKNRSLADFEKALTEYTKELRDDPIINTHLAKLYDNLLEQNLIRVI 339
Query: 279 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 319
+P++R++I I+ + + + DVE+ L +ILD + G +DQ
Sbjct: 340 EPFSRVQITHIAGLIKLSKNDVERKLSQMILDKKFHGILDQ 380
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 150/308 (48%), Gaps = 11/308 (3%)
Query: 16 VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 75
+++ ++K + N +D S + N + L EF + ++ ++ L + KL + F
Sbjct: 71 ISKPKTDKIVRNFIDIFS-TVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMF 129
Query: 76 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 135
+ +Y L L +R D L+E+ +E ++ KN K +
Sbjct: 130 EAKDYANALSGLTTLLTEIKRLDD------KPLLVEIQLVESRIQHALKNIPKARAALTS 183
Query: 136 ALAIKSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 194
A + I P++ I G +H E+ + A + FFE+++ YD + ++ LKY
Sbjct: 184 ARTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKY 243
Query: 195 LVLANMLME--SEVNPF-DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT 251
++L ++ +V+ +G+ Y N+ I A+T + ++ + + F+++ K
Sbjct: 244 MLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQ 303
Query: 252 IMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 311
+ DDP I +++ +L N+ Q L ++I+P++R+ I I+K +++P VE+ L +ILD
Sbjct: 304 LSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDK 363
Query: 312 RIDGHIDQ 319
+ +G +DQ
Sbjct: 364 KYNGILDQ 371
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 165/349 (47%), Gaps = 36/349 (10%)
Query: 8 MLTYIK---SAVTRNYSEKCINNIMDF---VSGSASQNFSLLREFYQTTLKALEEAKNER 61
+L Y++ +++++ + + + +++D + + Q L L+ +E AK E+
Sbjct: 69 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVEL-------CLECIEWAKAEK 121
Query: 62 LWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYA 114
F +L ++FD Y S++L+EL K DD+ + L+EV
Sbjct: 122 RTFLRQALEARLVSLYFDTKRYQEALQLGSQLLRELKK-------MDDK---ALLVEVQL 171
Query: 115 IEIQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAE-RQWADAATD 172
+E + Y N K + A +AI P++ + G +H AE + W A +
Sbjct: 172 LESKTYHALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSY 231
Query: 173 FFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNL 229
F+EAF+ D + + I LKY++L +++ + +V G+ A Y + A+ +
Sbjct: 232 FYEAFEGNDSIDSPKAITALKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCV 290
Query: 230 IAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 289
A + + FEK L + + DDP I ++ L N+ Q L+++I+P++R++I I
Sbjct: 291 AQASKNRSLANFEKALTDYKAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHI 350
Query: 290 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
S + +P+ +VE+ L +ILD + G +DQ +L D K Y A
Sbjct: 351 SSLIKLPKPEVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 161/324 (49%), Gaps = 29/324 (8%)
Query: 14 SAVTRNYSEKCINNIMD-FVSGSASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNL--K 69
S++++ + K + +++D F+ A + Q +E AK E R + + +L +
Sbjct: 78 SSISKAKAAKLVRSLVDMFLDMDAGTGIEV-----QLCKDCIEWAKQEKRTFLRQSLEAR 132
Query: 70 LCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 125
L ++FD Y +++L+EL K DD+ + L+EV +E + Y N
Sbjct: 133 LIALYFDTALYTEALALGAQLLRELKK-------LDDK---NLLVEVQLLESKTYHALSN 182
Query: 126 NKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMA-ERQWADAATDFFEAFKNYDEA 183
K + A +AI P++ G + G +H A ER + A + F+EAF+ +D
Sbjct: 183 LPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV 242
Query: 184 GNQRRIQCLKYLVLANMLM--ESEVNPF-DGQEAKPYKNDPEILAMTNLIAAYQRNEIIE 240
+ + + LKY++L +++ +VN G+ A Y +I AM ++ A + + +
Sbjct: 243 DSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSG-RDIDAMKSVAEASHKRSLAD 301
Query: 241 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDV 300
F+ LK +K + +D ++ ++ L + Q L ++I+PY+R+++ +++ + +P V
Sbjct: 302 FQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQV 361
Query: 301 EQLLVSLILDNRIDGHIDQVNRLL 324
E+ L +ILD + G +DQ +L
Sbjct: 362 EKKLSQMILDKKFSGILDQGEGVL 385
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 19/323 (5%)
Query: 6 REMLTYIK---SAVTRNYSEKCINNIMDFVS---GSASQNFSLLREFYQTTLKALEEAKN 59
R++LT ++ S + + + K + I+D V+ G+ +L +E + T K
Sbjct: 64 RKLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWT----RAEKR 119
Query: 60 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 119
L + +L + + EY +L L K +R DD+ L+++ +E ++
Sbjct: 120 TFLRQRVEARLAALLMENKEYVEALALLSTLVKEVRR---LDDKL---LLVDIDLLESKL 173
Query: 120 YTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178
+ +N K K A +AI P G I G +H E+ + + FFEAF+
Sbjct: 174 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFE 233
Query: 179 NYDEAGNQRRIQCLKYLVLANMLME--SEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRN 236
+++ G+ R + LKY++L +++ +V +A P++ AM + A+ +
Sbjct: 234 SFNALGDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKR 293
Query: 237 EIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVP 296
+ FE L+ + + DDP + ++ L + Q L +LI+P++R+ I I++ + +P
Sbjct: 294 SLKLFENALRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLP 353
Query: 297 EKDVEQLLVSLILDNRIDGHIDQ 319
VE+ L +ILD + G +DQ
Sbjct: 354 LDHVEKKLSQMILDKKFAGTLDQ 376
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 153/303 (50%), Gaps = 17/303 (5%)
Query: 59 NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 116
N+R + + +L +L +++ D+ E+ K+ +EL K ++ + + L+EV E
Sbjct: 107 NKREFLRRSLQARLVRLYNDVREFTEGQKLGQELSKELKKLEDRE------LLIEVSIEE 160
Query: 117 IQMYTETKNNKKLKQ-LYQKALAIKSAIPHPRIMGIIRECGGKMHMAE-RQWADAATDFF 174
+ N K K L + SA P++ + G ++ AE R + + + F+
Sbjct: 161 SKCAFNLNNLSKAKTALLTAKTSSNSAFASPQLQAAVDMQSGVLYSAEERDYKTSFSYFY 220
Query: 175 EAFKNYDEAGNQ-RRIQCLKYLVLAN-MLMESEVNP--FDGQEAKPYKNDPEILAMTNLI 230
EAF+ Y G++ LKY++L ML E+E P +E PY P I+A+ +
Sbjct: 221 EAFEGYGSIGDKVNATGALKYMILCKIMLNETEQIPAMLSTKEVLPYNTSPRIVAIRAMA 280
Query: 231 AAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFIS 290
A+++ + +F K L+ ++K +++D + + ++L + + + + ++I+PY+ I + +I+
Sbjct: 281 DAFRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIA 340
Query: 291 KELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLY 350
+ + + E+ + +ILD ++ G IDQ + ++ K++T + + +R L
Sbjct: 341 RVIGMTVPPTEKAIARMILDKKLMGSIDQHGDTVVIYPKAGATKQFT---RALTTIRELT 397
Query: 351 QTV 353
+TV
Sbjct: 398 KTV 400
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 141/288 (48%), Gaps = 14/288 (4%)
Query: 58 KNERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 115
K +R + + L KL +++D Y ++ L +R DD+ L EV+ +
Sbjct: 117 KEKRTFLRQALETKLISLYYDNSSYTDAINLINTLLSELKR---MDDKM---LLTEVHLL 170
Query: 116 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM-GIIRECGGKMHMAERQWADAATDFF 174
E ++Y +N K + A +A+ P ++ G + G +H + + A + F+
Sbjct: 171 ESKVYHAIRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFY 230
Query: 175 EAFKNYDEAGNQRR-IQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLI 230
EA++ + + ++ + LKY++L+ +++ S EV G+ A Y +I AM +
Sbjct: 231 EAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAG-RDIEAMRAIA 289
Query: 231 AAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFIS 290
A++ + +FEK L+ + + DP IR+++ L N+ Q LL++++P++R+ + I+
Sbjct: 290 QAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIA 349
Query: 291 KELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 338
+ + + VE L +ILD G +DQ + L D + K Y A
Sbjct: 350 ELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEA 397
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 154/306 (50%), Gaps = 34/306 (11%)
Query: 59 NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQR-EDGTDDQKKGSQLLEVYAI 115
N+R + + +L +L +++ D+ ++ K+ ++L K ++ ED +LL ++
Sbjct: 112 NKREFLRRSLQARLIRLYNDIRDFTNAQKLAQDLSKELKKLED--------RELLIEVSV 163
Query: 116 EIQMYTETKNNKKLKQLYQKALAI-------KSAIPHPRIMGIIRECGGKMHMAE-RQWA 167
E E+K++ L L + A+ SA P++ + G ++ AE R +
Sbjct: 164 E-----ESKSSFNLNNLAKAKTALLTAKTNTNSAFASPQLQASVDMQSGVLYSAEERDYK 218
Query: 168 DAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLAN-MLMESE--VNPFDGQEAKPYKNDPEI 223
+ + F+EAF+ + G++ LKY++L ML E+E +E Y+ P I
Sbjct: 219 TSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLAAKEIVAYQKSPRI 278
Query: 224 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTR 283
+A+ ++ A+++ + +F K L ++ +++D + + ++L +N+ + + ++I+PY+
Sbjct: 279 IAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSE 338
Query: 284 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWN 343
I + +I++ + + VE+ + +ILD ++ G IDQ GD K A +++
Sbjct: 339 IELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQ------HGDTVVVYPKADAANQFT 392
Query: 344 SQLRSL 349
L+++
Sbjct: 393 RSLKTI 398
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 17/281 (6%)
Query: 52 KALEEAKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 108
K++E AK E R++ K +L KL + + +Y ++ +L + ++ D
Sbjct: 120 KSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK------PS 173
Query: 109 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWA 167
L++V+ +E ++Y + +N K K A ++I P + + + G +H ++ +
Sbjct: 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233
Query: 168 DAATDFFEAFKNYDEAGN----QRRIQCLKYLVLANM---LMESEVNPFDGQEAKPYKND 220
A + FFE+F++Y ++ Q LKY++L+ + L++ N + + K
Sbjct: 234 TAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQS 293
Query: 221 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKP 280
I AM + AY +++F LK K +M D R++ L + L K+I+P
Sbjct: 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEP 353
Query: 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 321
+ + I ISK + + + VE L +ILD G +DQ N
Sbjct: 354 FECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGN 394
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 128/261 (49%), Gaps = 11/261 (4%)
Query: 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 128
+L +++ D+ Y + + +L + ++ D D L+EV E + Y N +
Sbjct: 147 RLVRLYNDLQRYTQALPLAADLIRELKKVDDKD------VLVEVELEESKAYYNLSNIGR 200
Query: 129 LKQLYQKALAIKSAI-PHPRIMGIIRECGGKMHMA-ERQWADAATDFFEAFKNYDEAGNQ 186
+ A +AI +PR+ + G +H A E+ + A + F+EAF+ YD +
Sbjct: 201 ARASLTGARTTANAIYVNPRMQAALDLQSGILHAADEKDFKTAFSYFYEAFEGYDSVDEK 260
Query: 187 -RRIQCLKYLVLANMLME--SEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEK 243
+ LKY++L ++++ EVN + N ++ AM + AA Q+ + +F+
Sbjct: 261 VSALTALKYMLLCKVMLDLPDEVNSLLSAKLALKYNGSDLDAMKAIAAAAQKRSLKDFQV 320
Query: 244 ILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQL 303
S + + DP +R + L + + + L ++I+PY+ ++I +++++ + VE+
Sbjct: 321 AFGSFPQELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKK 380
Query: 304 LVSLILDNRIDGHIDQVNRLL 324
L +ILD ++ G +DQ +L
Sbjct: 381 LSQMILDQKLSGSLDQGEGML 401
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 49/80 (61%)
Query: 243 KILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQ 302
+IL+S R + D +++ ++ L ++RT+ +++ +KP++ +R+ + K N P +E
Sbjct: 291 EILESYRPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIED 350
Query: 303 LLVSLILDNRIDGHIDQVNR 322
L ++I D +++ ID +N+
Sbjct: 351 ELFTMIKDGKLNARIDAINK 370
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 210 DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNV 269
+G K +++P+++ L+ +Y + +I++S + ++ DPFI +++L + +
Sbjct: 382 NGTFRKLLESEPQLI---ELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKI 438
Query: 270 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ---VNRLLER 326
R + +L+ ++PY+ I++ +++ + + +++ L+ LI + IDQ + R+L+
Sbjct: 439 RQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIVRILDE 498
Query: 327 GDRSKGMKKY-TAIDKWNSQLRSL 349
D + +K+ D+ + +SL
Sbjct: 499 RDENAILKRVNVTCDRATQKAKSL 522
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 234 QRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKEL 293
+R+E+ EFE +L+ ++K D + I D + V LL K Y I + L
Sbjct: 281 RRSELQEFEALLQDHQKAATSDG---SSILD--RAVFEHNLLSASKLYNNITFEELGALL 335
Query: 294 NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSL-YQT 352
++P E++ +I + R++GHIDQ++ ++ +R + +W+ Q++SL YQ
Sbjct: 336 DIPAVKAEKIASQMITEGRMNGHIDQISAIVHFENRE-------LLPQWDRQIQSLCYQV 388
Query: 353 VS 354
S
Sbjct: 389 NS 390
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 157 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 212
GK+ + ++ DA +A + A RIQC K+ +L +L+ E + G
Sbjct: 247 GKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGM 306
Query: 213 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 270
E +PY +TN + I + E K + D F ++ +L+ +R
Sbjct: 307 EKALRPY------FELTNAV------RIGDLELFRTVQEKFL--DTFAQDRTHNLIVRLR 352
Query: 271 TQVLLKLIK----PYTRIRIPFISKELNV----PEKDVEQLLVSLILDNRIDGHIDQVNR 322
V+ ++ Y+RI +P ++K+L + P D E ++ I D ID ID N
Sbjct: 353 HNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNG 412
Query: 323 LL---ERGD 328
+ E GD
Sbjct: 413 CMVSKETGD 421
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 157 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 212
GK+ + ++ DA +A + A RIQC K+ ++ +L+ E + G
Sbjct: 246 GKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGM 305
Query: 213 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 270
E +PY +TN A + ++ F KI + KT +D N I L NV
Sbjct: 306 EKTLRPY------FELTN---AVRIGDLELFGKIQEKFAKTFAEDR-THNLIVRLRHNVI 355
Query: 271 TQVLLKLIKPYTRIRIPFISKELNV----PEKDVEQLLVSLILDNRIDGHIDQVNRLL-- 324
L + Y+RI + ++++L + P D E ++ I D ID ID N +
Sbjct: 356 RTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMVS 415
Query: 325 -ERGD 328
E GD
Sbjct: 416 KETGD 420
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 23/185 (12%)
Query: 157 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 212
GK+ + ++ DA +A + +A R+QC K+ ++ +L+ E V G
Sbjct: 247 GKIRTIQLEYTDAKESLLQAARKAPQAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 306
Query: 213 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR 270
E +PY +TN A + ++ F K+ + T D N I L NV
Sbjct: 307 EKALRPY------FELTN---AVRIGDLELFRKVAEKFSSTFSSDG-TNNLIVRLRHNVI 356
Query: 271 TQVLLKLIKPYTRIRIPFISKELNV----PEKDVEQLLVSLILDNRIDGHIDQVNRLL-- 324
L + Y+RI + ++K+L + P D E ++ I D ID +D N +
Sbjct: 357 RTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVS 416
Query: 325 -ERGD 328
E GD
Sbjct: 417 KETGD 421
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 244 ILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQL 303
+L R ++ D +I ++ L +R + L++ PY + ++ N D+E
Sbjct: 373 LLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENE 432
Query: 304 LVSLILDNRIDGHIDQVNRLL 324
++ LILD +I ID N++L
Sbjct: 433 VMQLILDGQIQARIDSHNKIL 453
>sp|B5DGH9|EIF3E_SALSA Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar
GN=eif3e PE=2 SV=1
Length = 445
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q6P7L9|EIF3E_XENTR Eukaryotic translation initiation factor 3 subunit E OS=Xenopus
tropicalis GN=eif3e PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q3B8M3|EI3EB_XENLA Eukaryotic translation initiation factor 3 subunit E-B OS=Xenopus
laevis GN=eif3e-b PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q05AY2|EI3EA_XENLA Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus
laevis GN=eif3e-a PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAE 369
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q6DRI1|EI3EA_DANRE Eukaryotic translation initiation factor 3 subunit E-A OS=Danio
rerio GN=eif3ea PE=2 SV=2
Length = 446
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 310 QKKLRECEAVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISIGMLADKLNMTPEEAE 369
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 370 RWIVNLIRNARLDAKID 386
>sp|Q3T102|EIF3E_BOVIN Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus
GN=EIF3E PE=2 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q641X8|EIF3E_RAT Eukaryotic translation initiation factor 3 subunit E OS=Rattus
norvegicus GN=Eif3e PE=2 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q5R8K9|EIF3E_PONAB Eukaryotic translation initiation factor 3 subunit E OS=Pongo
abelii GN=EIF3E PE=2 SV=2
Length = 445
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|P60229|EIF3E_MOUSE Eukaryotic translation initiation factor 3 subunit E OS=Mus
musculus GN=Eif3e PE=1 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q4R6G8|EIF3E_MACFA Eukaryotic translation initiation factor 3 subunit E OS=Macaca
fascicularis GN=EIF3E PE=2 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|P60228|EIF3E_HUMAN Eukaryotic translation initiation factor 3 subunit E OS=Homo
sapiens GN=EIF3E PE=1 SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D ID
Sbjct: 369 RWIVNLIRNARLDAKID 385
>sp|Q1LUA8|EI3EB_DANRE Eukaryotic translation initiation factor 3 subunit E-B OS=Danio
rerio GN=eif3eb PE=2 SV=2
Length = 446
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 245 LKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 304
L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E+ +
Sbjct: 313 LRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWI 372
Query: 305 VSLILDNRIDGHID 318
V+LI + R+D ID
Sbjct: 373 VNLIRNARLDAKID 386
>sp|Q5ZLA5|EIF3E_CHICK Eukaryotic translation initiation factor 3 subunit E OS=Gallus
gallus GN=EIF3E PE=2 SV=1
Length = 445
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 242 EKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVE 301
+K L+ +++D F+ +ED ++N R + + + I I ++ +LN+ ++ E
Sbjct: 309 QKKLRECETVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISIGMLADKLNMTPEEAE 368
Query: 302 QLLVSLILDNRIDGHID 318
+ +V+LI + R+D +D
Sbjct: 369 RWIVNLIRNARLDAKLD 385
>sp|Q6C0Q2|EIF3E_YARLI Eukaryotic translation initiation factor 3 subunit E OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=INT6 PE=3 SV=1
Length = 421
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 211 GQEAKPYKNDPEILAMTNLIAAYQ----RNEIIEFEKILKSNRKTIMDDPFIRNYIEDLL 266
GQE Y+ DP + +L Y +N++ + EK+LK D F+ + + L
Sbjct: 278 GQEEYEYQ-DPLTRFVKSLYIDYSFEDAQNQLADCEKVLKQ-------DFFLADSADAFL 329
Query: 267 KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 319
++ R + + + R+ I +S+ LN+ ++ E+ + +LI D+R+D ID+
Sbjct: 330 ESARKLMSQVYCRVHQRVDIAQLSQTLNLSQEQGEKWIANLIKDSRMDAKIDE 382
>sp|Q7S519|EIF3E_NEUCR Eukaryotic translation initiation factor 3 subunit E OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=int-6 PE=3 SV=1
Length = 443
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 235 RNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN 294
+ +++ E++L+S D F+ + +D + + R + K + RI + +S L
Sbjct: 328 QQQLVLAEEVLRS-------DFFLLAHADDFVDSARHLIFESYCKIHARISLKDLSARLG 380
Query: 295 VPEKDVEQLLVSLILDNRIDGHID 318
+ D E+ +V+LI D R+D ID
Sbjct: 381 LNNDDAEKWIVNLIRDTRLDAKID 404
>sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M
OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1
Length = 401
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 263 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322
+D L+ +R L L +++ ISK L + E +VE +++ + + +D +DQ+NR
Sbjct: 288 DDCLQKIRLLSLATLTSEQSKVPYSLISKMLQIDENEVEMWVINAMEGDLLDAKLDQLNR 347
Query: 323 LLERGDRSKGM---KKYTAIDK----WNSQLRSLYQTVSN 355
++ ++ + +++ + + W S +++L Q + N
Sbjct: 348 IVNVNSSTQRVFNKSQWSQLGQRFSVWKSSVKNLLQVIEN 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,266,792
Number of Sequences: 539616
Number of extensions: 5216308
Number of successful extensions: 14738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 14632
Number of HSP's gapped (non-prelim): 109
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)