Query 018294
Match_columns 358
No_of_seqs 208 out of 1146
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 3.3E-61 1.1E-65 460.1 32.0 339 2-352 39-389 (394)
2 4b4t_P 26S proteasome regulato 100.0 3.4E-48 1.2E-52 379.7 23.3 326 15-355 87-428 (445)
3 4b4t_R RPN7, 26S proteasome re 100.0 5.4E-44 1.8E-48 348.8 24.0 308 38-354 105-422 (429)
4 4b4t_Q 26S proteasome regulato 100.0 8.4E-39 2.9E-43 309.3 32.6 341 2-350 75-423 (434)
5 4b4t_O 26S proteasome regulato 100.0 6.2E-31 2.1E-35 253.2 21.6 277 76-356 88-387 (393)
6 4b4t_S RPN3, 26S proteasome re 99.9 2.5E-23 8.5E-28 202.4 17.6 290 47-352 172-471 (523)
7 3t5x_A PCI domain-containing p 99.9 8E-22 2.7E-26 172.3 12.1 170 149-330 13-194 (203)
8 3t5v_B Nuclear mRNA export pro 99.8 5.5E-19 1.9E-23 171.3 21.9 242 79-329 141-429 (455)
9 1ufm_A COP9 complex subunit 4; 99.7 4E-18 1.4E-22 126.6 4.7 73 260-332 7-79 (84)
10 3chm_A COP9 signalosome comple 99.4 1.4E-12 4.8E-17 109.7 9.3 128 193-332 27-160 (169)
11 4b0z_A RPN12, 26S proteasome r 98.6 9.5E-07 3.3E-11 78.1 15.7 183 119-306 16-214 (229)
12 3ro3_A PINS homolog, G-protein 98.0 0.00045 1.5E-08 54.9 15.9 111 65-181 50-160 (164)
13 3ro2_A PINS homolog, G-protein 98.0 0.00045 1.5E-08 61.9 17.6 112 65-182 224-335 (338)
14 1qqe_A Vesicular transport pro 97.9 0.0066 2.3E-07 54.6 25.4 188 65-259 78-274 (292)
15 3sf4_A G-protein-signaling mod 97.9 0.0012 4E-08 61.3 20.8 116 65-186 228-343 (406)
16 3ro3_A PINS homolog, G-protein 97.9 0.0007 2.4E-08 53.7 15.3 115 65-185 10-124 (164)
17 4a1s_A PINS, partner of inscut 97.9 0.00088 3E-08 62.7 18.3 116 65-186 264-379 (411)
18 3ulq_A Response regulator aspa 97.8 0.0024 8.3E-08 59.6 20.7 128 65-201 185-313 (383)
19 3gw4_A Uncharacterized protein 97.8 0.0017 5.9E-08 54.1 17.7 140 42-186 44-183 (203)
20 3q15_A PSP28, response regulat 97.8 0.0017 6E-08 60.6 18.8 119 65-190 183-301 (378)
21 3ro2_A PINS homolog, G-protein 97.7 0.0052 1.8E-07 54.8 20.8 116 65-186 124-259 (338)
22 3sf4_A G-protein-signaling mod 97.7 0.0078 2.7E-07 55.6 22.1 116 65-186 128-263 (406)
23 4a1s_A PINS, partner of inscut 97.7 0.0056 1.9E-07 57.2 20.8 117 64-186 166-299 (411)
24 2ifu_A Gamma-SNAP; membrane fu 97.7 0.013 4.4E-07 53.1 22.6 183 65-256 77-265 (307)
25 3q15_A PSP28, response regulat 97.6 0.0018 6.1E-08 60.5 16.5 126 65-195 142-267 (378)
26 2ifu_A Gamma-SNAP; membrane fu 97.6 0.0069 2.4E-07 55.0 19.7 106 65-177 117-222 (307)
27 3ulq_A Response regulator aspa 97.6 0.0025 8.6E-08 59.5 17.1 123 65-192 144-267 (383)
28 3edt_B KLC 2, kinesin light ch 97.6 0.0049 1.7E-07 53.7 17.9 137 40-180 59-199 (283)
29 4gcn_A Protein STI-1; structur 97.6 0.00095 3.2E-08 52.4 11.5 99 68-178 12-111 (127)
30 3nf1_A KLC 1, kinesin light ch 97.6 0.012 4.3E-07 52.0 20.5 112 65-180 112-225 (311)
31 3u3w_A Transcriptional activat 97.5 0.0032 1.1E-07 56.6 15.8 115 66-185 157-272 (293)
32 3gw4_A Uncharacterized protein 97.5 0.005 1.7E-07 51.2 15.9 116 65-186 27-143 (203)
33 2qfc_A PLCR protein; TPR, HTH, 97.4 0.0046 1.6E-07 55.6 15.7 118 65-187 156-274 (293)
34 3nf1_A KLC 1, kinesin light ch 97.4 0.011 3.6E-07 52.5 17.9 109 65-178 154-306 (311)
35 3edt_B KLC 2, kinesin light ch 97.4 0.011 3.8E-07 51.3 17.4 72 64-139 127-198 (283)
36 4gco_A Protein STI-1; structur 97.3 0.0019 6.5E-08 50.7 10.6 93 68-178 17-109 (126)
37 1qqe_A Vesicular transport pro 97.3 0.038 1.3E-06 49.5 20.2 108 66-179 119-228 (292)
38 3u3w_A Transcriptional activat 97.3 0.025 8.4E-07 50.7 18.6 109 69-183 120-229 (293)
39 2xev_A YBGF; tetratricopeptide 97.2 0.0056 1.9E-07 47.0 12.5 102 68-181 6-107 (129)
40 2qfc_A PLCR protein; TPR, HTH, 97.2 0.027 9.1E-07 50.5 18.4 108 67-180 118-226 (293)
41 4b4t_T 26S proteasome regulato 97.2 0.0071 2.4E-07 54.5 14.0 153 151-306 60-223 (274)
42 4b4t_Q 26S proteasome regulato 97.2 0.02 7E-07 53.7 17.7 113 69-187 100-212 (434)
43 3upv_A Heat shock protein STI1 97.1 0.011 3.9E-07 45.3 12.5 95 68-180 8-102 (126)
44 1elr_A TPR2A-domain of HOP; HO 97.0 0.0099 3.4E-07 45.1 11.8 100 68-179 8-108 (131)
45 1wi9_A Protein C20ORF116 homol 97.0 0.0019 6.6E-08 45.1 6.3 58 273-330 11-68 (72)
46 4ga2_A E3 SUMO-protein ligase 97.0 0.0025 8.6E-08 51.5 8.3 90 68-175 35-124 (150)
47 3sz7_A HSC70 cochaperone (SGT) 97.0 0.013 4.3E-07 47.5 12.5 96 67-180 14-109 (164)
48 3q49_B STIP1 homology and U bo 96.9 0.015 5.2E-07 45.0 11.8 95 68-180 13-107 (137)
49 2xcb_A PCRH, regulatory protei 96.9 0.025 8.4E-07 44.7 13.2 95 68-180 22-116 (142)
50 3gyz_A Chaperone protein IPGC; 96.8 0.012 4.2E-07 47.8 11.2 96 67-180 39-134 (151)
51 3n71_A Histone lysine methyltr 96.8 0.04 1.4E-06 53.9 16.6 107 69-180 314-423 (490)
52 1hz4_A MALT regulatory protein 96.8 0.23 7.9E-06 45.5 21.0 109 67-180 96-204 (373)
53 4ga2_A E3 SUMO-protein ligase 96.8 0.0038 1.3E-07 50.4 7.7 92 69-178 2-93 (150)
54 2vgx_A Chaperone SYCD; alterna 96.8 0.026 8.8E-07 45.3 12.6 95 67-179 24-118 (148)
55 1hxi_A PEX5, peroxisome target 96.7 0.017 5.7E-07 44.7 10.6 93 68-178 21-113 (121)
56 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.029 9.9E-07 47.0 12.8 102 67-181 40-152 (213)
57 2dba_A Smooth muscle cell asso 96.6 0.023 7.8E-07 44.3 11.3 97 68-179 32-128 (148)
58 3rkv_A Putative peptidylprolyl 96.6 0.024 8.1E-07 45.7 11.3 106 68-179 15-126 (162)
59 2kck_A TPR repeat; tetratricop 96.6 0.014 4.8E-07 42.9 9.2 96 68-179 10-106 (112)
60 1elw_A TPR1-domain of HOP; HOP 96.5 0.03 1E-06 41.4 10.8 94 68-179 8-101 (118)
61 3u4t_A TPR repeat-containing p 96.5 0.064 2.2E-06 46.5 14.3 97 68-179 7-103 (272)
62 2lni_A Stress-induced-phosphop 96.5 0.016 5.6E-07 44.1 9.3 94 68-179 20-113 (133)
63 3qky_A Outer membrane assembly 96.4 0.12 4E-06 45.0 15.7 108 65-181 53-179 (261)
64 4i17_A Hypothetical protein; T 96.4 0.047 1.6E-06 46.4 12.5 96 69-178 47-145 (228)
65 3qww_A SET and MYND domain-con 96.4 0.055 1.9E-06 52.0 14.0 100 76-180 310-412 (433)
66 3uq3_A Heat shock protein STI1 96.4 0.19 6.4E-06 42.7 16.4 96 67-180 142-237 (258)
67 3qky_A Outer membrane assembly 96.4 0.034 1.2E-06 48.6 11.7 103 67-181 18-128 (261)
68 2vyi_A SGTA protein; chaperone 96.3 0.042 1.4E-06 41.4 10.7 95 67-179 15-109 (131)
69 1a17_A Serine/threonine protei 96.3 0.038 1.3E-06 43.9 10.8 94 68-179 17-110 (166)
70 2fbn_A 70 kDa peptidylprolyl i 96.2 0.038 1.3E-06 46.1 10.8 107 67-179 41-151 (198)
71 1hz4_A MALT regulatory protein 96.2 0.24 8.1E-06 45.4 16.9 113 65-184 15-127 (373)
72 3qwp_A SET and MYND domain-con 96.1 0.095 3.2E-06 50.3 13.9 104 74-182 297-403 (429)
73 3urz_A Uncharacterized protein 96.0 0.072 2.5E-06 45.0 11.7 93 68-178 8-116 (208)
74 1na0_A Designed protein CTPR3; 96.0 0.089 3E-06 39.1 11.1 93 68-178 13-105 (125)
75 3vtx_A MAMA; tetratricopeptide 96.0 0.062 2.1E-06 43.9 10.9 93 68-178 9-101 (184)
76 2l6j_A TPR repeat-containing p 96.0 0.0086 2.9E-07 44.4 4.9 61 68-140 8-68 (111)
77 2yhc_A BAMD, UPF0169 lipoprote 95.9 0.51 1.8E-05 40.0 16.9 106 67-181 44-178 (225)
78 3n71_A Histone lysine methyltr 95.9 0.2 6.8E-06 48.9 15.6 108 65-177 352-462 (490)
79 3uq3_A Heat shock protein STI1 95.9 0.054 1.9E-06 46.3 10.5 98 68-178 9-107 (258)
80 4i17_A Hypothetical protein; T 95.9 0.13 4.5E-06 43.5 12.8 96 68-180 11-106 (228)
81 2pl2_A Hypothetical conserved 95.8 0.08 2.7E-06 45.1 11.3 92 68-178 77-179 (217)
82 3vtx_A MAMA; tetratricopeptide 95.8 0.087 3E-06 43.0 11.1 92 69-178 78-169 (184)
83 2fo7_A Synthetic consensus TPR 95.7 0.11 3.8E-06 38.9 10.7 92 69-178 40-131 (136)
84 2fo7_A Synthetic consensus TPR 95.7 0.12 3.9E-06 38.8 10.8 93 68-178 5-97 (136)
85 4abn_A Tetratricopeptide repea 95.7 1.1 3.9E-05 42.9 20.2 96 65-179 103-208 (474)
86 2yhc_A BAMD, UPF0169 lipoprote 95.7 0.13 4.6E-06 43.8 12.1 103 68-182 8-128 (225)
87 3hym_B Cell division cycle pro 95.7 0.26 9E-06 43.6 14.5 103 67-178 196-298 (330)
88 1ihg_A Cyclophilin 40; ppiase 95.7 0.083 2.8E-06 49.5 11.5 106 68-179 227-336 (370)
89 3ieg_A DNAJ homolog subfamily 95.7 0.14 4.7E-06 45.9 12.6 98 68-179 238-335 (359)
90 3as5_A MAMA; tetratricopeptide 95.6 0.13 4.5E-06 41.1 11.4 90 69-176 47-136 (186)
91 3as5_A MAMA; tetratricopeptide 95.6 0.13 4.4E-06 41.2 11.1 96 67-180 11-106 (186)
92 3urz_A Uncharacterized protein 95.5 0.15 5E-06 43.1 11.6 62 66-139 56-117 (208)
93 1rz4_A Eukaryotic translation 95.5 0.041 1.4E-06 48.0 8.0 94 219-326 95-189 (226)
94 2y4t_A DNAJ homolog subfamily 95.5 0.74 2.5E-05 42.9 17.6 97 69-179 262-358 (450)
95 2vq2_A PILW, putative fimbrial 95.5 0.29 1E-05 40.5 13.4 94 67-178 11-105 (225)
96 2c2l_A CHIP, carboxy terminus 95.5 0.067 2.3E-06 47.8 9.7 95 68-180 8-102 (281)
97 2y4t_A DNAJ homolog subfamily 95.5 0.67 2.3E-05 43.2 17.2 103 68-178 215-323 (450)
98 2e2e_A Formate-dependent nitri 95.4 0.092 3.1E-06 42.6 9.7 95 68-180 48-145 (177)
99 2pl2_A Hypothetical conserved 95.4 0.092 3.1E-06 44.7 10.0 94 68-179 43-147 (217)
100 2ho1_A Type 4 fimbrial biogene 95.4 0.22 7.5E-06 42.5 12.6 95 66-178 39-133 (252)
101 1p5q_A FKBP52, FK506-binding p 95.4 0.17 5.9E-06 46.4 12.4 106 67-178 150-258 (336)
102 1a17_A Serine/threonine protei 95.4 0.18 6.1E-06 39.8 11.1 94 67-176 50-143 (166)
103 2ho1_A Type 4 fimbrial biogene 95.4 0.12 4.2E-06 44.2 10.8 97 67-179 74-170 (252)
104 1fch_A Peroxisomal targeting s 95.3 0.29 9.8E-06 44.3 13.8 24 70-93 223-246 (368)
105 1xnf_A Lipoprotein NLPI; TPR, 95.3 0.12 4E-06 44.7 10.7 95 67-179 46-140 (275)
106 3mv2_B Coatomer subunit epsilo 95.3 0.11 3.6E-06 47.6 10.3 99 68-181 104-209 (310)
107 1fch_A Peroxisomal targeting s 95.3 0.38 1.3E-05 43.5 14.3 102 67-180 254-360 (368)
108 3hym_B Cell division cycle pro 95.2 0.11 3.6E-06 46.3 10.2 95 68-180 129-223 (330)
109 2vq2_A PILW, putative fimbrial 95.2 0.14 4.8E-06 42.5 10.5 97 67-179 45-142 (225)
110 3ieg_A DNAJ homolog subfamily 95.2 0.25 8.4E-06 44.2 12.7 106 68-178 192-300 (359)
111 4gyw_A UDP-N-acetylglucosamine 95.1 0.088 3E-06 54.0 10.4 93 68-178 13-105 (723)
112 2hr2_A Hypothetical protein; a 95.1 0.42 1.4E-05 39.1 12.6 111 68-179 15-131 (159)
113 3u4t_A TPR repeat-containing p 95.1 0.092 3.1E-06 45.5 9.1 96 68-178 41-136 (272)
114 3cv0_A Peroxisome targeting si 95.0 0.52 1.8E-05 41.5 14.0 91 69-177 177-267 (327)
115 4eqf_A PEX5-related protein; a 95.0 0.14 4.9E-06 46.6 10.5 99 65-179 178-276 (365)
116 2q7f_A YRRB protein; TPR, prot 94.9 0.17 5.9E-06 42.7 10.3 93 69-179 62-154 (243)
117 2q7f_A YRRB protein; TPR, prot 94.9 0.23 7.9E-06 41.9 11.1 95 67-179 26-120 (243)
118 3k9i_A BH0479 protein; putativ 94.8 0.14 4.7E-06 38.7 8.5 88 77-179 3-90 (117)
119 4eqf_A PEX5-related protein; a 94.8 0.19 6.3E-06 45.8 10.8 95 67-179 68-162 (365)
120 1kt0_A FKBP51, 51 kDa FK506-bi 94.8 0.16 5.5E-06 48.9 10.7 105 68-178 272-379 (457)
121 3cv0_A Peroxisome targeting si 94.8 0.11 3.8E-06 46.0 9.0 101 68-180 210-316 (327)
122 4gyw_A UDP-N-acetylglucosamine 94.8 0.14 4.9E-06 52.5 10.7 93 68-178 47-139 (723)
123 4g1t_A Interferon-induced prot 94.7 0.1 3.6E-06 49.4 9.0 107 69-178 56-166 (472)
124 1p5q_A FKBP52, FK506-binding p 94.5 1.4 4.7E-05 40.2 15.9 97 65-179 197-294 (336)
125 2v5f_A Prolyl 4-hydroxylase su 94.5 0.19 6.5E-06 37.5 8.3 68 67-139 8-75 (104)
126 3ma5_A Tetratricopeptide repea 94.4 0.17 5.8E-06 37.2 7.9 61 68-140 11-71 (100)
127 1xnf_A Lipoprotein NLPI; TPR, 94.4 0.15 5.1E-06 44.0 8.7 99 67-179 8-106 (275)
128 1hh8_A P67PHOX, NCF-2, neutrop 94.2 0.17 5.8E-06 42.1 8.4 91 68-179 10-100 (213)
129 1wao_1 Serine/threonine protei 94.2 0.14 4.6E-06 49.7 8.6 94 68-179 10-103 (477)
130 3mv2_B Coatomer subunit epsilo 94.0 1.6 5.4E-05 39.8 14.8 127 65-204 137-270 (310)
131 1w3b_A UDP-N-acetylglucosamine 94.0 0.33 1.1E-05 44.6 10.6 91 69-177 4-94 (388)
132 4gcn_A Protein STI-1; structur 93.9 0.41 1.4E-05 36.8 9.6 78 68-153 46-123 (127)
133 2xpi_A Anaphase-promoting comp 93.7 0.35 1.2E-05 47.2 10.7 95 68-180 411-505 (597)
134 2vsy_A XCC0866; transferase, g 93.7 0.32 1.1E-05 47.7 10.4 59 114-178 95-156 (568)
135 2kc7_A BFR218_protein; tetratr 93.5 0.51 1.7E-05 33.9 8.9 60 68-139 4-64 (99)
136 4f3v_A ESX-1 secretion system 93.4 0.41 1.4E-05 43.1 9.7 93 69-178 107-199 (282)
137 3mkr_A Coatomer subunit epsilo 93.4 4 0.00014 36.2 19.2 91 68-179 105-195 (291)
138 2xev_A YBGF; tetratricopeptide 93.4 1.1 3.7E-05 33.5 11.0 64 67-139 42-105 (129)
139 2gw1_A Mitochondrial precursor 93.3 0.57 2E-05 44.4 11.2 94 67-179 9-102 (514)
140 3fp2_A TPR repeat-containing p 93.3 0.38 1.3E-05 46.0 10.0 97 66-180 312-408 (537)
141 2xpi_A Anaphase-promoting comp 93.3 0.49 1.7E-05 46.1 11.0 100 69-179 480-579 (597)
142 4abn_A Tetratricopeptide repea 93.2 0.44 1.5E-05 45.9 10.4 96 68-178 174-286 (474)
143 2if4_A ATFKBP42; FKBP-like, al 93.2 0.27 9.3E-06 45.1 8.5 105 68-178 183-292 (338)
144 2gw1_A Mitochondrial precursor 93.2 0.28 9.4E-06 46.6 8.9 96 67-180 307-402 (514)
145 3txn_A 26S proteasome regulato 93.1 2.6 8.9E-05 39.7 15.1 79 115-193 104-183 (394)
146 3rkv_A Putative peptidylprolyl 92.9 2.2 7.4E-05 33.7 12.7 63 65-139 64-126 (162)
147 1w3b_A UDP-N-acetylglucosamine 92.6 0.71 2.4E-05 42.3 10.5 96 66-179 205-300 (388)
148 2vsy_A XCC0866; transferase, g 92.5 0.7 2.4E-05 45.3 10.9 94 67-178 26-119 (568)
149 2kat_A Uncharacterized protein 92.4 0.68 2.3E-05 34.3 8.5 60 68-139 23-82 (115)
150 3qou_A Protein YBBN; thioredox 92.3 0.98 3.3E-05 40.1 10.7 60 67-138 120-179 (287)
151 2kat_A Uncharacterized protein 92.2 1.6 5.6E-05 32.1 10.4 69 111-185 20-88 (115)
152 3fp2_A TPR repeat-containing p 92.1 0.74 2.5E-05 44.0 10.3 97 65-179 277-373 (537)
153 1kt0_A FKBP51, 51 kDa FK506-bi 92.1 3.6 0.00012 39.2 15.1 93 65-175 318-410 (457)
154 1xn7_A Hypothetical protein YH 91.9 0.2 6.8E-06 35.8 4.4 41 273-313 6-46 (78)
155 3ma5_A Tetratricopeptide repea 91.8 1.8 6.1E-05 31.4 10.0 69 111-185 8-76 (100)
156 1qgp_A Protein (double strande 91.7 0.43 1.5E-05 33.9 6.0 46 274-319 19-67 (77)
157 3lpz_A GET4 (YOR164C homolog); 91.7 8 0.00027 35.5 16.8 227 18-260 9-283 (336)
158 2k02_A Ferrous iron transport 91.3 0.23 7.8E-06 36.3 4.2 44 273-316 6-49 (87)
159 3k9i_A BH0479 protein; putativ 91.2 0.89 3E-05 33.9 7.9 61 67-139 30-90 (117)
160 1elr_A TPR2A-domain of HOP; HO 91.2 1.1 3.9E-05 33.0 8.6 68 67-139 41-108 (131)
161 1sfx_A Conserved hypothetical 91.2 1.8 6.2E-05 31.8 9.6 71 281-356 32-104 (109)
162 2lni_A Stress-induced-phosphop 91.1 1.5 5.2E-05 32.5 9.3 61 67-139 53-113 (133)
163 3qww_A SET and MYND domain-con 91.0 0.47 1.6E-05 45.5 7.4 81 65-149 341-424 (433)
164 3mkr_A Coatomer subunit epsilo 91.0 4.2 0.00014 36.0 13.5 98 67-180 133-230 (291)
165 1na3_A Designed protein CTPR2; 91.0 1.1 3.6E-05 31.2 7.7 60 68-139 13-72 (91)
166 2vyi_A SGTA protein; chaperone 90.9 1.3 4.3E-05 32.7 8.5 61 67-139 49-109 (131)
167 2fbn_A 70 kDa peptidylprolyl i 90.7 1.4 4.8E-05 36.2 9.4 63 65-139 89-151 (198)
168 3t5v_A Nuclear mRNA export pro 90.7 0.32 1.1E-05 44.5 5.7 113 186-305 113-247 (316)
169 1ihg_A Cyclophilin 40; ppiase 90.6 4.1 0.00014 37.7 13.5 89 65-171 274-362 (370)
170 4gco_A Protein STI-1; structur 90.5 0.87 3E-05 34.9 7.4 60 68-139 51-110 (126)
171 2jt1_A PEFI protein; solution 90.5 0.31 1.1E-05 34.7 4.2 33 282-314 23-55 (77)
172 2h6f_A Protein farnesyltransfe 90.4 0.98 3.4E-05 42.3 8.9 93 68-178 101-194 (382)
173 1ouv_A Conserved hypothetical 90.1 3.3 0.00011 35.6 11.8 89 68-178 10-106 (273)
174 2dba_A Smooth muscle cell asso 90.0 1.9 6.5E-05 32.8 9.1 63 65-139 66-128 (148)
175 3sz7_A HSC70 cochaperone (SGT) 89.7 2.4 8.1E-05 33.5 9.7 63 67-141 48-110 (164)
176 2l6j_A TPR repeat-containing p 89.4 3.8 0.00013 29.3 10.0 66 110-181 4-69 (111)
177 1qbj_A Protein (double-strande 89.4 0.45 1.5E-05 34.2 4.4 55 274-329 15-72 (81)
178 2r5s_A Uncharacterized protein 89.3 1.7 5.8E-05 35.0 8.6 59 68-138 10-68 (176)
179 1elw_A TPR1-domain of HOP; HOP 89.1 1.5 5.3E-05 31.6 7.6 61 67-139 41-101 (118)
180 2xcb_A PCRH, regulatory protei 89.0 1.7 5.9E-05 33.6 8.2 62 68-141 56-117 (142)
181 3upv_A Heat shock protein STI1 89.0 1.4 4.8E-05 33.0 7.4 61 68-140 42-102 (126)
182 2h6f_A Protein farnesyltransfe 88.5 0.88 3E-05 42.6 7.1 93 68-178 135-228 (382)
183 1na3_A Designed protein CTPR2; 88.4 2.6 9E-05 28.9 8.2 65 109-179 8-72 (91)
184 3qwp_A SET and MYND domain-con 88.4 1.4 4.9E-05 41.9 8.5 81 65-149 330-413 (429)
185 2v79_A DNA replication protein 88.2 0.96 3.3E-05 35.8 6.0 60 282-344 50-111 (135)
186 1ub9_A Hypothetical protein PH 87.9 2.9 0.0001 30.2 8.4 66 282-352 29-97 (100)
187 1ouv_A Conserved hypothetical 87.8 3.9 0.00013 35.2 10.5 90 67-178 41-142 (273)
188 2heo_A Z-DNA binding protein 1 87.5 0.79 2.7E-05 31.4 4.5 34 282-315 24-57 (67)
189 3gyz_A Chaperone protein IPGC; 87.4 4.7 0.00016 32.0 9.9 66 107-178 33-98 (151)
190 2vgx_A Chaperone SYCD; alterna 87.4 1.6 5.5E-05 34.4 7.1 62 68-141 59-120 (148)
191 1wao_1 Serine/threonine protei 87.4 1.1 3.7E-05 43.3 7.1 89 68-174 44-134 (477)
192 3q49_B STIP1 homology and U bo 87.3 2 6.7E-05 32.4 7.4 63 67-141 46-108 (137)
193 2e2e_A Formate-dependent nitri 87.2 0.69 2.3E-05 37.2 4.8 88 73-178 19-109 (177)
194 1na0_A Designed protein CTPR3; 87.1 2.5 8.6E-05 30.6 7.7 60 68-139 47-106 (125)
195 2if4_A ATFKBP42; FKBP-like, al 87.1 0.66 2.3E-05 42.5 5.1 62 66-139 232-293 (338)
196 2pzi_A Probable serine/threoni 86.9 0.99 3.4E-05 45.7 6.8 93 67-178 436-528 (681)
197 2kck_A TPR repeat; tetratricop 86.9 1.3 4.4E-05 31.7 5.8 62 68-139 44-106 (112)
198 2kc7_A BFR218_protein; tetratr 86.9 2.6 9E-05 29.8 7.5 60 115-179 5-64 (99)
199 2d1h_A ST1889, 109AA long hypo 86.2 4 0.00014 29.8 8.4 46 276-321 29-74 (109)
200 1hxi_A PEX5, peroxisome target 86.1 1.7 5.7E-05 33.0 6.2 60 68-139 55-114 (121)
201 2pzi_A Probable serine/threoni 85.6 2.5 8.5E-05 42.7 8.9 94 75-178 402-495 (681)
202 2ond_A Cleavage stimulation fa 85.3 3.4 0.00011 36.7 8.9 96 68-180 103-199 (308)
203 2ond_A Cleavage stimulation fa 85.1 14 0.00046 32.6 12.8 83 80-178 80-162 (308)
204 3ffl_A Anaphase-promoting comp 85.0 13 0.00045 30.3 11.3 70 69-141 25-94 (167)
205 3f6o_A Probable transcriptiona 84.4 3.1 0.00011 31.6 7.1 75 269-350 19-93 (118)
206 2hr2_A Hypothetical protein; a 84.3 13 0.00043 30.1 11.0 76 109-184 10-91 (159)
207 4g1t_A Interferon-induced prot 83.9 16 0.00054 33.9 13.3 59 69-139 218-276 (472)
208 2hzt_A Putative HTH-type trans 83.8 5.4 0.00018 29.7 8.1 65 281-345 25-94 (107)
209 2htj_A P fimbrial regulatory p 83.6 2.5 8.4E-05 29.8 5.8 34 282-315 13-46 (81)
210 2kko_A Possible transcriptiona 83.0 3.5 0.00012 30.9 6.7 37 282-318 37-73 (108)
211 3r0a_A Putative transcriptiona 82.8 3.3 0.00011 31.9 6.6 68 284-351 43-116 (123)
212 3jth_A Transcription activator 82.5 7.6 0.00026 28.1 8.3 49 269-319 24-72 (98)
213 4f3v_A ESX-1 secretion system 82.4 12 0.00043 33.3 11.1 101 66-179 137-237 (282)
214 3cuo_A Uncharacterized HTH-typ 82.2 6 0.00021 28.4 7.7 41 280-320 35-75 (99)
215 2oqg_A Possible transcriptiona 82.1 9.4 0.00032 28.3 9.0 37 282-318 33-69 (114)
216 2gxg_A 146AA long hypothetical 81.9 8.7 0.0003 29.7 9.1 47 281-327 48-97 (146)
217 3tgn_A ADC operon repressor AD 81.9 6 0.0002 30.7 8.1 46 277-323 46-91 (146)
218 2fbi_A Probable transcriptiona 81.8 6.7 0.00023 30.1 8.3 43 281-323 48-90 (142)
219 1jgs_A Multiple antibiotic res 81.6 7.1 0.00024 29.9 8.4 43 281-323 46-88 (138)
220 4h7y_A Dual specificity protei 81.5 9.1 0.00031 30.9 8.7 64 62-138 59-122 (161)
221 2nnn_A Probable transcriptiona 81.4 8.7 0.0003 29.3 8.8 42 282-323 51-92 (140)
222 1xd7_A YWNA; structural genomi 81.4 2.1 7.1E-05 34.1 5.1 57 273-331 14-70 (145)
223 3bpv_A Transcriptional regulat 81.3 7.3 0.00025 29.8 8.3 43 281-323 41-83 (138)
224 2fbh_A Transcriptional regulat 81.2 7.4 0.00025 30.0 8.4 50 279-328 48-100 (146)
225 2ooe_A Cleavage stimulation fa 81.1 8.3 0.00028 37.0 10.4 96 68-180 325-421 (530)
226 3oop_A LIN2960 protein; protei 80.9 5.7 0.0002 30.8 7.6 47 282-328 50-99 (143)
227 2rdp_A Putative transcriptiona 80.6 8.1 0.00028 30.1 8.5 42 281-322 54-95 (150)
228 2wpv_A GET4, UPF0363 protein Y 80.5 33 0.0011 31.0 13.5 34 220-253 242-275 (312)
229 3eco_A MEPR; mutlidrug efflux 80.3 8 0.00027 29.7 8.3 46 282-327 46-94 (139)
230 3lwf_A LIN1550 protein, putati 80.2 5.2 0.00018 32.4 7.2 50 282-331 43-92 (159)
231 3k0l_A Repressor protein; heli 80.2 7.2 0.00025 31.0 8.2 47 281-327 58-107 (162)
232 1lj9_A Transcriptional regulat 79.6 8.2 0.00028 29.8 8.2 47 281-327 41-90 (144)
233 3df8_A Possible HXLR family tr 79.6 5.9 0.0002 29.8 7.0 80 267-347 26-107 (111)
234 2v5f_A Prolyl 4-hydroxylase su 79.5 8.9 0.0003 28.0 7.9 66 113-178 8-74 (104)
235 3ech_A MEXR, multidrug resista 79.2 4.5 0.00015 31.4 6.4 43 281-323 49-91 (142)
236 3t8r_A Staphylococcus aureus C 79.1 5.7 0.0002 31.5 7.0 49 282-330 27-75 (143)
237 2a61_A Transcriptional regulat 79.0 9 0.00031 29.5 8.2 43 281-323 45-87 (145)
238 1tbx_A ORF F-93, hypothetical 78.6 9 0.00031 27.7 7.6 49 281-329 20-72 (99)
239 2ooe_A Cleavage stimulation fa 78.5 9.7 0.00033 36.5 9.9 95 68-179 276-385 (530)
240 1s3j_A YUSO protein; structura 78.4 8.5 0.00029 30.1 8.0 42 281-322 49-90 (155)
241 2cfx_A HTH-type transcriptiona 78.3 3.3 0.00011 32.7 5.4 47 274-320 10-59 (144)
242 3bja_A Transcriptional regulat 78.1 6.9 0.00024 29.9 7.2 42 281-322 45-86 (139)
243 3rjv_A Putative SEL1 repeat pr 78.0 14 0.00047 30.6 9.6 89 67-178 21-117 (212)
244 1zu2_A Mitochondrial import re 78.0 11 0.00038 30.4 8.5 91 76-178 14-119 (158)
245 2y75_A HTH-type transcriptiona 78.0 4.2 0.00014 31.4 5.8 47 282-328 25-71 (129)
246 3bj6_A Transcriptional regulat 77.9 8.4 0.00029 30.0 7.8 49 280-328 51-102 (152)
247 2eth_A Transcriptional regulat 77.7 11 0.00038 29.5 8.5 41 282-322 57-97 (154)
248 2p5v_A Transcriptional regulat 77.7 3.3 0.00011 33.4 5.3 46 275-320 16-64 (162)
249 1q1h_A TFE, transcription fact 77.7 1.2 4.2E-05 33.4 2.5 44 273-316 23-66 (110)
250 2hr3_A Probable transcriptiona 77.7 11 0.00037 29.2 8.4 48 281-328 48-98 (147)
251 3s2w_A Transcriptional regulat 77.3 8.4 0.00029 30.5 7.7 48 281-328 62-112 (159)
252 3nqo_A MARR-family transcripti 77.2 9.9 0.00034 31.3 8.3 43 280-322 54-96 (189)
253 3i4p_A Transcriptional regulat 77.0 3.2 0.00011 33.6 5.0 48 273-320 7-57 (162)
254 1oyi_A Double-stranded RNA-bin 76.9 3.2 0.00011 29.7 4.3 39 276-315 24-62 (82)
255 3cdh_A Transcriptional regulat 76.7 10 0.00035 29.7 8.0 52 277-328 51-105 (155)
256 2nyx_A Probable transcriptiona 76.5 12 0.00039 30.1 8.4 41 282-322 58-98 (168)
257 1ku9_A Hypothetical protein MJ 76.4 13 0.00045 28.6 8.5 41 282-322 40-80 (152)
258 2dbb_A Putative HTH-type trans 76.3 3.6 0.00012 32.7 5.1 47 274-320 14-63 (151)
259 2r5s_A Uncharacterized protein 76.2 10 0.00034 30.2 8.0 95 67-179 43-137 (176)
260 3cjn_A Transcriptional regulat 76.2 12 0.00041 29.5 8.4 47 281-327 64-113 (162)
261 3tqn_A Transcriptional regulat 75.9 6.9 0.00024 29.5 6.4 62 263-326 12-74 (113)
262 2fsw_A PG_0823 protein; alpha- 75.8 9.4 0.00032 28.3 7.1 64 281-344 36-104 (107)
263 2cg4_A Regulatory protein ASNC 75.7 3.1 0.00011 33.1 4.5 46 275-320 14-62 (152)
264 1ylf_A RRF2 family protein; st 75.4 4.8 0.00016 32.1 5.6 47 282-329 29-75 (149)
265 1r7j_A Conserved hypothetical 75.3 15 0.0005 26.8 7.8 65 284-354 21-88 (95)
266 2w25_A Probable transcriptiona 74.6 4.8 0.00016 31.9 5.4 45 276-320 14-61 (150)
267 1yyv_A Putative transcriptiona 74.6 21 0.00071 27.6 9.0 66 281-346 46-116 (131)
268 3g3z_A NMB1585, transcriptiona 74.3 6.4 0.00022 30.5 6.1 47 282-328 44-93 (145)
269 3nrv_A Putative transcriptiona 74.3 8.2 0.00028 30.0 6.7 47 281-327 52-101 (148)
270 2fa5_A Transcriptional regulat 74.1 11 0.00037 29.8 7.5 42 281-322 61-102 (162)
271 2e1c_A Putative HTH-type trans 74.0 3.5 0.00012 33.8 4.6 46 275-320 33-81 (171)
272 2qww_A Transcriptional regulat 73.6 7.2 0.00025 30.6 6.3 48 281-328 53-105 (154)
273 3deu_A Transcriptional regulat 73.5 17 0.00057 29.1 8.6 47 282-328 67-116 (166)
274 2pg4_A Uncharacterized protein 73.5 7.1 0.00024 28.1 5.7 32 283-314 30-62 (95)
275 4b4t_O 26S proteasome regulato 73.2 42 0.0014 31.2 12.4 63 65-131 128-190 (393)
276 3e6m_A MARR family transcripti 72.8 9.8 0.00034 30.2 7.0 47 282-328 66-115 (161)
277 3bro_A Transcriptional regulat 72.8 11 0.00038 28.8 7.1 46 283-328 50-98 (141)
278 2pn6_A ST1022, 150AA long hypo 72.6 4.9 0.00017 31.8 5.0 47 274-320 8-57 (150)
279 2cyy_A Putative HTH-type trans 72.4 3.9 0.00013 32.5 4.4 46 275-320 13-61 (151)
280 2ia0_A Putative HTH-type trans 72.3 5.4 0.00019 32.6 5.3 46 275-320 23-71 (171)
281 1z7u_A Hypothetical protein EF 72.1 25 0.00085 26.1 8.7 43 282-324 34-77 (112)
282 3by6_A Predicted transcription 71.6 7.9 0.00027 29.9 5.8 63 263-327 14-77 (126)
283 2c2l_A CHIP, carboxy terminus 71.5 7.7 0.00026 34.0 6.5 61 68-140 42-102 (281)
284 3bdd_A Regulatory protein MARR 71.0 7 0.00024 30.0 5.5 47 281-327 43-92 (142)
285 3bee_A Putative YFRE protein; 70.8 16 0.00054 26.3 7.1 48 126-179 25-72 (93)
286 3neu_A LIN1836 protein; struct 70.8 9 0.00031 29.5 6.0 64 262-327 15-79 (125)
287 3pqk_A Biofilm growth-associat 70.7 27 0.00093 25.2 9.2 46 282-327 35-80 (102)
288 3fm5_A Transcriptional regulat 70.5 14 0.00048 28.7 7.3 42 282-323 53-94 (150)
289 2xvc_A ESCRT-III, SSO0910; cel 70.5 4.8 0.00016 26.5 3.5 33 282-314 24-56 (59)
290 1i1g_A Transcriptional regulat 69.9 5.7 0.00019 31.0 4.7 40 276-315 11-50 (141)
291 4a5n_A Uncharacterized HTH-typ 69.1 28 0.00097 27.0 8.6 66 281-346 37-107 (131)
292 1xi4_A Clathrin heavy chain; a 69.0 13 0.00046 40.8 8.5 78 69-176 1054-1131(1630)
293 3ffl_A Anaphase-promoting comp 68.9 21 0.00073 29.1 8.0 66 114-179 24-92 (167)
294 3qou_A Protein YBBN; thioredox 68.6 17 0.0006 31.7 8.3 96 66-179 153-248 (287)
295 2b0l_A GTP-sensing transcripti 68.4 7.3 0.00025 28.9 4.8 56 270-326 30-86 (102)
296 3k69_A Putative transcription 68.2 11 0.00038 30.5 6.3 36 281-316 26-61 (162)
297 4aik_A Transcriptional regulat 68.0 36 0.0012 26.7 9.3 47 282-328 45-94 (151)
298 1v4r_A Transcriptional repress 67.9 3.3 0.00011 30.6 2.7 62 263-326 14-76 (102)
299 2ek5_A Predicted transcription 67.6 11 0.00039 29.1 6.0 62 263-326 7-69 (129)
300 1xmk_A Double-stranded RNA-spe 67.4 3.8 0.00013 29.1 2.8 40 275-314 17-57 (79)
301 4ham_A LMO2241 protein; struct 67.2 41 0.0014 25.9 11.1 64 263-328 17-81 (134)
302 3kp7_A Transcriptional regulat 66.5 12 0.0004 29.2 6.0 48 280-327 48-100 (151)
303 2qvo_A Uncharacterized protein 66.3 21 0.00073 25.5 7.0 46 283-328 30-75 (95)
304 3f3x_A Transcriptional regulat 66.2 29 0.00099 26.6 8.3 39 285-323 52-90 (144)
305 3boq_A Transcriptional regulat 65.9 12 0.00042 29.4 6.1 49 280-328 59-110 (160)
306 3hsr_A HTH-type transcriptiona 65.7 15 0.00052 28.2 6.5 53 276-328 43-98 (140)
307 2qlz_A Transcription factor PF 65.7 30 0.001 29.8 8.8 44 281-327 176-219 (232)
308 1u2w_A CADC repressor, cadmium 65.3 34 0.0012 25.8 8.3 36 282-317 55-90 (122)
309 1y0u_A Arsenical resistance op 64.9 14 0.00046 26.7 5.7 44 282-329 42-85 (96)
310 2f2e_A PA1607; transcription f 64.7 17 0.00057 28.7 6.6 65 281-345 35-102 (146)
311 3jw4_A Transcriptional regulat 64.6 11 0.00037 29.4 5.4 43 282-324 56-98 (148)
312 3rjv_A Putative SEL1 repeat pr 63.6 60 0.002 26.5 12.2 60 69-138 90-157 (212)
313 2frh_A SARA, staphylococcal ac 62.9 25 0.00084 26.7 7.1 47 282-328 52-101 (127)
314 1r1u_A CZRA, repressor protein 62.1 18 0.00063 26.5 6.1 37 282-318 38-74 (106)
315 2xm6_A Protein corresponding t 61.9 59 0.002 30.5 11.1 57 68-138 43-107 (490)
316 1sfu_A 34L protein; protein/Z- 61.9 21 0.0007 25.0 5.6 39 277-315 23-61 (75)
317 2bv6_A MGRA, HTH-type transcri 61.6 17 0.00058 27.8 6.1 48 281-328 49-99 (142)
318 1on2_A Transcriptional regulat 60.9 26 0.00087 27.0 7.0 46 281-329 20-65 (142)
319 1pc2_A Mitochondria fission pr 60.1 47 0.0016 26.5 8.4 63 67-139 35-100 (152)
320 2k9l_A RNA polymerase sigma fa 59.8 7.7 0.00026 27.1 3.3 26 281-306 46-71 (76)
321 3u2r_A Regulatory protein MARR 59.3 20 0.00068 28.5 6.3 42 282-323 61-102 (168)
322 2xm6_A Protein corresponding t 57.6 1.2E+02 0.0042 28.2 13.0 89 67-177 78-178 (490)
323 1r1t_A Transcriptional repress 57.3 47 0.0016 25.1 7.8 37 282-318 58-94 (122)
324 4hbl_A Transcriptional regulat 57.1 11 0.00036 29.5 4.1 48 281-328 53-103 (149)
325 4h7y_A Dual specificity protei 56.7 76 0.0026 25.5 9.1 52 121-178 71-122 (161)
326 4g26_A Pentatricopeptide repea 56.7 86 0.0029 30.0 11.3 92 69-176 110-201 (501)
327 4e6h_A MRNA 3'-END-processing 56.7 1.4E+02 0.0047 30.0 13.1 60 68-139 347-407 (679)
328 3b73_A PHIH1 repressor-like pr 56.6 14 0.00049 27.9 4.5 50 275-327 19-70 (111)
329 1klx_A Cysteine rich protein B 56.4 63 0.0021 24.5 10.3 87 70-178 31-125 (138)
330 2pex_A Transcriptional regulat 56.2 16 0.00056 28.4 5.1 48 281-328 59-109 (153)
331 3f6v_A Possible transcriptiona 55.7 20 0.00068 28.6 5.5 51 267-319 57-107 (151)
332 1uly_A Hypothetical protein PH 55.5 18 0.0006 30.2 5.4 35 282-316 32-66 (192)
333 2vkj_A TM1634; membrane protei 55.0 34 0.0012 24.7 5.9 49 66-121 55-103 (106)
334 2x4h_A Hypothetical protein SS 54.9 18 0.00062 27.8 5.1 50 275-328 23-72 (139)
335 2p7v_B Sigma-70, RNA polymeras 54.7 19 0.00066 23.9 4.6 30 281-310 23-52 (68)
336 1z91_A Organic hydroperoxide r 53.3 14 0.00049 28.4 4.3 47 282-328 53-102 (147)
337 3c7j_A Transcriptional regulat 53.0 23 0.0008 30.3 6.0 64 260-325 26-89 (237)
338 2lnb_A Z-DNA-binding protein 1 52.4 31 0.0011 24.2 5.2 37 277-313 28-64 (80)
339 4e6h_A MRNA 3'-END-processing 52.4 74 0.0025 32.0 10.3 109 68-181 382-501 (679)
340 2lkp_A Transcriptional regulat 51.6 41 0.0014 24.9 6.6 45 282-328 44-88 (119)
341 3ic7_A Putative transcriptiona 50.7 11 0.00037 29.0 3.1 63 263-327 14-77 (126)
342 2p5k_A Arginine repressor; DNA 50.3 43 0.0015 21.6 5.8 51 270-325 6-61 (64)
343 2jsc_A Transcriptional regulat 49.6 38 0.0013 25.4 6.1 36 283-318 34-69 (118)
344 3kp1_E D-ornithine aminomutase 48.9 40 0.0014 25.7 5.7 60 253-313 17-77 (121)
345 2jpc_A SSRB; DNA binding prote 48.9 24 0.00083 22.6 4.3 29 281-309 11-39 (61)
346 2zkz_A Transcriptional repress 48.6 72 0.0025 22.9 7.4 36 282-318 40-75 (99)
347 3iuo_A ATP-dependent DNA helic 48.1 16 0.00055 28.0 3.6 33 282-314 31-64 (122)
348 3e4b_A ALGK; tetratricopeptide 48.0 1.3E+02 0.0046 27.8 11.0 89 68-177 180-278 (452)
349 2pft_A Exocytosis protein; hel 48.0 45 0.0015 32.7 7.8 82 223-308 485-567 (571)
350 3e6c_C CPRK, cyclic nucleotide 47.9 9.8 0.00033 32.5 2.7 68 282-353 176-247 (250)
351 2vn2_A DNAD, chromosome replic 47.7 15 0.0005 28.4 3.4 57 284-343 52-110 (128)
352 1ucr_A Protein DSVD; dissimila 47.1 20 0.00068 25.1 3.5 35 280-314 18-53 (78)
353 2vxz_A Pyrsv_GP04; viral prote 46.9 91 0.0031 24.9 7.7 43 271-314 13-55 (165)
354 2pi2_A Replication protein A 3 46.7 4.1 0.00014 36.2 0.0 38 282-319 223-261 (270)
355 3c57_A Two component transcrip 45.8 26 0.00089 25.2 4.4 30 281-310 40-69 (95)
356 1fse_A GERE; helix-turn-helix 45.0 33 0.0011 22.8 4.6 29 281-309 24-52 (74)
357 3f8m_A GNTR-family protein tra 45.0 61 0.0021 27.9 7.4 62 262-328 16-78 (248)
358 1ku3_A Sigma factor SIGA; heli 44.9 29 0.00099 23.4 4.3 28 282-309 29-56 (73)
359 1je8_A Nitrate/nitrite respons 44.6 33 0.0011 23.9 4.6 30 281-310 34-63 (82)
360 1j5y_A Transcriptional regulat 44.5 38 0.0013 27.7 5.7 48 268-315 20-69 (187)
361 3ri2_A Transcriptional regulat 44.2 1E+02 0.0035 23.4 10.2 88 260-354 12-108 (123)
362 3i71_A Ethanolamine utilizatio 43.4 35 0.0012 22.4 4.0 34 282-315 17-50 (68)
363 2rnj_A Response regulator prot 43.2 29 0.001 24.6 4.3 30 281-310 42-71 (91)
364 1z6r_A MLC protein; transcript 43.0 29 0.001 32.2 5.4 42 273-314 20-61 (406)
365 2wte_A CSA3; antiviral protein 43.0 45 0.0015 28.9 6.1 65 282-348 165-230 (244)
366 1x3u_A Transcriptional regulat 42.8 37 0.0013 23.0 4.7 30 281-310 29-58 (79)
367 1xi4_A Clathrin heavy chain; a 42.4 2E+02 0.007 31.9 12.0 83 68-175 1109-1191(1630)
368 2fbk_A Transcriptional regulat 42.1 29 0.00099 28.0 4.6 46 283-328 86-134 (181)
369 3hrs_A Metalloregulator SCAR; 42.1 88 0.003 26.1 7.8 53 274-329 11-63 (214)
370 2fxa_A Protease production reg 41.9 25 0.00087 29.3 4.3 47 282-328 61-110 (207)
371 2fu4_A Ferric uptake regulatio 41.3 62 0.0021 22.1 5.7 34 282-315 32-70 (83)
372 2pjp_A Selenocysteine-specific 41.2 34 0.0011 25.9 4.5 33 283-315 20-52 (121)
373 3hug_A RNA polymerase sigma fa 41.1 40 0.0014 23.9 4.7 29 281-309 51-79 (92)
374 3ihu_A Transcriptional regulat 40.9 50 0.0017 27.7 6.1 63 262-326 18-80 (222)
375 3edp_A LIN2111 protein; APC883 40.6 47 0.0016 28.4 5.9 64 263-328 12-76 (236)
376 2hs5_A Putative transcriptiona 40.4 55 0.0019 27.9 6.4 62 263-326 31-92 (239)
377 2cru_A Programmed cell death p 40.2 13 0.00045 28.4 1.9 51 267-319 36-88 (118)
378 3t72_q RNA polymerase sigma fa 40.1 36 0.0012 25.0 4.4 29 282-310 38-66 (99)
379 1z05_A Transcriptional regulat 40.1 33 0.0011 32.2 5.2 41 274-314 44-84 (429)
380 4b8x_A SCO5413, possible MARR- 40.0 57 0.0019 25.3 5.9 44 280-323 48-91 (147)
381 1okr_A MECI, methicillin resis 39.6 87 0.003 23.0 6.8 38 281-318 22-63 (123)
382 1ldd_A APC2WHB, anaphase promo 39.5 35 0.0012 23.7 3.9 39 276-314 15-64 (74)
383 3sxy_A Transcriptional regulat 39.4 43 0.0015 28.0 5.4 62 263-326 15-76 (218)
384 2wv0_A YVOA, HTH-type transcri 38.9 58 0.002 27.9 6.3 63 263-327 13-76 (243)
385 3bee_A Putative YFRE protein; 38.7 87 0.003 22.1 6.3 62 69-142 11-75 (93)
386 2k9m_A RNA polymerase sigma fa 38.6 25 0.00084 27.4 3.4 26 281-306 37-62 (130)
387 3esl_A Checkpoint serine/threo 38.2 1.8E+02 0.006 24.4 11.3 83 45-138 58-143 (202)
388 3eet_A Putative GNTR-family tr 38.0 59 0.002 28.4 6.3 64 262-327 31-95 (272)
389 4a0z_A Transcription factor FA 37.8 43 0.0015 27.8 5.0 46 266-311 9-54 (190)
390 2ff4_A Probable regulatory pro 37.4 99 0.0034 28.4 8.0 63 65-139 172-234 (388)
391 3la7_A Global nitrogen regulat 36.7 47 0.0016 28.0 5.3 45 283-331 193-237 (243)
392 3ax2_A Mitochondrial import re 36.6 1E+02 0.0035 21.2 6.2 36 62-97 15-50 (73)
393 1hw1_A FADR, fatty acid metabo 36.3 62 0.0021 27.3 6.0 62 263-326 10-72 (239)
394 2dk5_A DNA-directed RNA polyme 36.0 62 0.0021 23.2 5.0 35 282-316 35-69 (91)
395 1tc3_C Protein (TC3 transposas 35.2 24 0.00084 21.0 2.4 27 282-308 20-46 (51)
396 2b1e_A Exocyst complex compone 35.1 1.1E+02 0.0038 29.9 8.3 78 226-308 486-563 (564)
397 2o8x_A Probable RNA polymerase 34.9 35 0.0012 22.3 3.4 29 281-309 29-57 (70)
398 3mkq_A Coatomer beta'-subunit; 34.9 1.5E+02 0.005 29.5 9.5 84 71-175 659-748 (814)
399 2hoe_A N-acetylglucosamine kin 34.8 12 0.0004 34.7 1.1 40 274-314 25-64 (380)
400 4fx0_A Probable transcriptiona 34.6 1.3E+02 0.0045 23.1 7.3 41 282-323 51-91 (148)
401 1eij_A Hypothetical protein MT 34.3 22 0.00074 25.2 2.1 22 298-319 37-58 (80)
402 3ulq_B Transcriptional regulat 33.8 55 0.0019 23.3 4.4 29 282-310 43-71 (90)
403 2oz6_A Virulence factor regula 33.5 50 0.0017 26.7 4.8 42 283-328 164-205 (207)
404 2l0k_A Stage III sporulation p 32.9 36 0.0012 24.7 3.3 33 272-305 10-42 (93)
405 3bwg_A Uncharacterized HTH-typ 32.9 86 0.0029 26.7 6.3 61 264-326 9-70 (239)
406 3dv8_A Transcriptional regulat 32.6 40 0.0014 27.6 4.1 44 283-330 169-212 (220)
407 2p4w_A Transcriptional regulat 32.1 1.6E+02 0.0053 24.5 7.7 37 282-318 27-63 (202)
408 3l7w_A Putative uncharacterize 32.0 1.5E+02 0.005 21.6 6.9 35 288-322 31-65 (108)
409 3dkw_A DNR protein; CRP-FNR, H 31.9 52 0.0018 27.0 4.7 46 282-331 177-222 (227)
410 1tty_A Sigma-A, RNA polymerase 31.5 42 0.0014 23.5 3.4 28 282-309 37-64 (87)
411 2gqq_A Leucine-responsive regu 31.4 14 0.00049 29.6 0.9 39 277-315 21-59 (163)
412 3ryp_A Catabolite gene activat 31.4 53 0.0018 26.6 4.6 42 283-328 167-208 (210)
413 2h09_A Transcriptional regulat 31.4 1.8E+02 0.0061 22.4 8.7 45 282-329 53-97 (155)
414 2fh0_A Hypothetical 16.0 kDa p 31.2 24 0.00083 25.0 2.0 22 298-319 35-56 (81)
415 2di3_A Bacterial regulatory pr 30.9 97 0.0033 26.1 6.4 65 263-327 7-74 (239)
416 2wvi_A Mitotic checkpoint seri 30.7 2.1E+02 0.0072 23.0 9.5 81 43-139 42-125 (164)
417 2pmr_A Uncharacterized protein 30.3 1.5E+02 0.0051 21.2 7.0 17 71-87 46-62 (87)
418 1zu2_A Mitochondrial import re 29.7 2.1E+02 0.0072 22.7 9.4 60 69-140 41-121 (158)
419 1zyb_A Transcription regulator 29.6 69 0.0024 26.6 5.1 45 282-330 185-229 (232)
420 1klx_A Cysteine rich protein B 29.5 1.7E+02 0.0057 21.9 7.0 59 67-139 60-126 (138)
421 1bia_A BIRA bifunctional prote 29.4 65 0.0022 29.0 5.1 44 271-314 7-50 (321)
422 3pvv_A Chromosomal replication 29.4 1.1E+02 0.0036 22.5 5.4 46 226-272 53-98 (101)
423 2w48_A Sorbitol operon regulat 28.9 88 0.003 27.9 5.9 40 281-320 19-58 (315)
424 3mzy_A RNA polymerase sigma-H 28.6 60 0.002 25.0 4.3 30 280-309 121-150 (164)
425 2qc0_A Uncharacterized protein 28.0 2.5E+02 0.0087 25.6 9.1 43 283-326 311-353 (373)
426 1b89_A Protein (clathrin heavy 27.9 67 0.0023 30.6 5.1 23 114-136 152-174 (449)
427 2da7_A Zinc finger homeobox pr 27.9 46 0.0016 22.9 2.8 27 282-308 31-57 (71)
428 3eqx_A FIC domain containing t 27.6 2.8E+02 0.0096 25.4 9.3 43 283-326 311-353 (373)
429 3u64_A Protein TP_0956; tetrat 26.9 3.4E+02 0.012 24.2 9.7 60 116-180 205-270 (301)
430 3ly7_A Transcriptional activat 26.6 1.2E+02 0.0042 27.9 6.5 61 111-178 278-338 (372)
431 1p4w_A RCSB; solution structur 26.6 69 0.0024 23.3 3.9 28 282-309 48-75 (99)
432 1nd9_A Translation initiation 26.5 54 0.0018 19.9 2.9 25 283-307 2-26 (49)
433 1x2m_A LAG1 longevity assuranc 26.4 67 0.0023 21.5 3.5 25 282-306 27-51 (64)
434 2kfs_A Conserved hypothetical 25.9 42 0.0014 26.7 2.7 38 282-326 30-68 (148)
435 3ez9_A Para; DNA binding, wing 25.9 86 0.003 28.9 5.5 60 259-318 14-78 (403)
436 4ev0_A Transcription regulator 25.5 50 0.0017 26.9 3.4 45 282-330 162-206 (216)
437 2d74_B Translation initiation 25.4 2.2E+02 0.0074 22.5 6.9 53 284-341 47-99 (148)
438 1z4h_A TORI, TOR inhibition pr 25.2 1.3E+02 0.0043 19.8 4.8 51 282-345 9-59 (66)
439 2zcw_A TTHA1359, transcription 24.7 55 0.0019 26.5 3.5 43 283-329 146-188 (202)
440 3e97_A Transcriptional regulat 24.6 56 0.0019 27.0 3.6 43 283-329 175-217 (231)
441 2lfw_A PHYR sigma-like domain; 24.4 57 0.0019 25.6 3.4 31 279-309 105-135 (157)
442 3b02_A Transcriptional regulat 24.4 48 0.0016 26.7 3.0 43 283-329 139-181 (195)
443 3k2z_A LEXA repressor; winged 24.1 97 0.0033 25.3 5.0 33 283-315 24-56 (196)
444 2e9h_A EIF-5, eukaryotic trans 24.0 2.8E+02 0.0094 22.1 7.4 54 285-341 45-98 (157)
445 1ft9_A Carbon monoxide oxidati 24.0 59 0.002 26.7 3.6 32 283-314 163-194 (222)
446 4aez_C MAD3, mitotic spindle c 24.0 3.3E+02 0.011 23.0 8.6 61 62-138 118-178 (223)
447 3d0s_A Transcriptional regulat 23.9 58 0.002 26.8 3.5 43 283-329 177-219 (227)
448 3lmm_A Uncharacterized protein 23.9 70 0.0024 31.5 4.6 41 269-309 430-470 (583)
449 2gau_A Transcriptional regulat 23.8 59 0.002 26.9 3.6 44 282-329 179-222 (232)
450 1om2_A Protein (mitochondrial 23.2 1.2E+02 0.004 22.1 4.5 34 63-96 19-52 (95)
451 3iwz_A CAP-like, catabolite ac 23.1 60 0.0021 26.7 3.5 42 283-328 187-228 (230)
452 2fmy_A COOA, carbon monoxide o 23.1 61 0.0021 26.5 3.5 44 282-329 166-210 (220)
453 3mkq_A Coatomer beta'-subunit; 22.6 2E+02 0.0068 28.5 7.9 18 69-86 634-651 (814)
454 2l01_A Uncharacterized protein 22.4 2E+02 0.0069 20.0 5.8 50 277-328 18-68 (77)
455 3lmm_A Uncharacterized protein 22.3 18 0.00063 35.7 0.0 43 272-314 519-561 (583)
456 1mkm_A ICLR transcriptional re 22.3 97 0.0033 26.4 4.8 34 283-316 23-56 (249)
457 3mn2_A Probable ARAC family tr 22.1 1.3E+02 0.0043 21.7 4.8 26 282-307 17-42 (108)
458 1p6r_A Penicillinase repressor 22.1 1E+02 0.0035 20.9 4.1 38 281-318 21-62 (82)
459 3dpl_C Cullin-5; ubiquitin, NE 21.7 83 0.0028 29.1 4.4 32 281-312 213-244 (382)
460 3nau_A Zinc fingers and homeob 21.4 69 0.0024 21.7 2.7 27 280-306 27-54 (66)
461 3fap_B FRAP, FKBP12-rapamycin 21.4 2.4E+02 0.008 20.4 6.7 28 70-97 16-43 (94)
462 1k8b_A EIF-2-beta, probable tr 21.3 1.7E+02 0.0057 18.6 4.5 38 285-327 13-50 (52)
463 2bgc_A PRFA; bacterial infecti 21.3 1.2E+02 0.0041 25.2 5.1 44 283-330 169-213 (238)
464 2hvu_A PDCD5-like protein; YMR 21.2 42 0.0014 25.5 1.8 22 298-319 70-91 (116)
465 4g26_A Pentatricopeptide repea 20.9 2.4E+02 0.0081 26.8 7.7 59 69-138 145-203 (501)
466 3t5v_B Nuclear mRNA export pro 20.2 2E+02 0.0068 27.3 6.8 69 69-139 181-249 (455)
467 4a1g_A Mitotic checkpoint seri 20.1 3.3E+02 0.011 21.5 9.3 81 43-139 47-130 (152)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=3.3e-61 Score=460.12 Aligned_cols=339 Identities=23% Similarity=0.406 Sum_probs=292.9
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhh-hHHH--hhhhhHHHHhhhc
Q 018294 2 MDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER-LWFK--TNLKLCKIWFDMG 78 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r-~~~~--~~~~la~~~~~~g 78 (358)
.+.+.+++|++ +.++|+|++|+|++++|.++.+|+ . ...++++|+++++|+.++| .|+| ++.+||++|++.|
T Consensus 39 ~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~--~--~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~ 113 (394)
T 3txn_A 39 ADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDA--G--TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTA 113 (394)
T ss_dssp HHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCC--C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCC--c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678889999 999999999999999999999886 3 5888999999999999885 6777 5569999999999
Q ss_pred hHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-CChhhhHHHhhhhh
Q 018294 79 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHPRIMGIIRECGG 157 (358)
Q Consensus 79 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~-~~~~~~~~i~~~~g 157 (358)
+|.+|.+++.+++.+|... |+ +.+++|++++++++|..++|+.+++.+|++|+++.+++ ++|.+++.+++|+|
T Consensus 114 ~y~~a~~~i~~l~~~~~~~---dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G 187 (394)
T 3txn_A 114 LYTEALALGAQLLRELKKL---DD---KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG 187 (394)
T ss_dssp CHHHHHHHHHHHHHHHTTS---SC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc---cc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence 9999999999999999864 34 58999999999999999999999999999999999998 68999999999999
Q ss_pred hhHh-hhhcHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHhhCCC--CCCcCC-cccccCCCCccHHHHHHHHHHH
Q 018294 158 KMHM-AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE--VNPFDG-QEAKPYKNDPEILAMTNLIAAY 233 (358)
Q Consensus 158 ~~~~-~~~~y~~A~~~f~e~~~~~~~~~~~~~~~~l~y~~l~~lL~~~~--~~~~~~-~~~~~~~~~p~~~~l~~L~~af 233 (358)
++|+ .+|+|.+|+.+|+++|++|++.+++++.++++|++||+||+.+. ++++.+ +....| .+|+++|+..|+.+|
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~ 266 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS 266 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999998763 334333 334556 589999999999999
Q ss_pred HhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcc
Q 018294 234 QRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 313 (358)
Q Consensus 234 ~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i 313 (358)
+++|+..|..+++.+++.+..|+++++|+..|+++||+++++++++||++|+|++||+.||+|++++|.+|++||.+|+|
T Consensus 267 ~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 267 HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCEEEEccCCccchHHHH----HHHHHHHHHHHHHH
Q 018294 314 DGHIDQVNRLLERGDRSKGMKKYTA----IDKWNSQLRSLYQT 352 (358)
Q Consensus 314 ~akID~~~g~v~~~~~~~~~~~~~~----l~~w~~~i~~l~~~ 352 (358)
+|+|||++|+|++.++++.+.+|++ +.+|+..|++|.+.
T Consensus 347 ~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 347 SGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQK 389 (394)
T ss_dssp CEEEETTTTEEEECCC---------------------------
T ss_pred eEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776765 45688888777654
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-48 Score=379.71 Aligned_cols=326 Identities=14% Similarity=0.202 Sum_probs=261.4
Q ss_pred hcchhhhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHH-----HhhhhhHHHHhhhchHhHHHHHHHH
Q 018294 15 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKE 89 (358)
Q Consensus 15 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~-----~~~~~la~~~~~~g~~~~a~~~l~~ 89 (358)
...|..++++|+.++++++.+|+.+.+....+++++.. .+++|+|+ |++.+||++|++.|+|.+|+++|++
T Consensus 87 ~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~----vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~ 162 (445)
T 4b4t_P 87 GQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRV----VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCE 162 (445)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSS----SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45688899999999999998776445555555555444 78899887 7778999999999999999999999
Q ss_pred HHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hhccCCChhhhHHHhhhhhhhHhhhhcHHH
Q 018294 90 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA-IKSAIPHPRIMGIIRECGGKMHMAERQWAD 168 (358)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~-~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~ 168 (358)
++++|.+. ++ ...++++++.++|+|++.+|+.+|+.+++++.. ......+|.+++.++.|+|++++++++|.+
T Consensus 163 l~~Et~~~---~~---~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 163 LQVETYGS---ME---MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp HHHHHCSS---SC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhc---cc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999754 55 588999999999999999999999999999865 444456789999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCcCCccc-ccCC--CCccHHHHHHHHHHHHhCCHHHHHHH
Q 018294 169 AATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEA-KPYK--NDPEILAMTNLIAAYQRNEIIEFEKI 244 (358)
Q Consensus 169 A~~~f~e~~~~~~~~~~~-~~~~~l~y~~l~~lL~~~~~~~~~~~~~-~~~~--~~p~~~~l~~L~~af~~~d~~~f~~~ 244 (358)
|+++|+++|.+|+..+++ .+..+++++++|.+|++.. |..+... +.+. ..++++++..|+++|.++++..|..+
T Consensus 237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~--~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~ 314 (445)
T 4b4t_P 237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYG--NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIV 314 (445)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCS--STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHH
Confidence 999999999999988887 5677888899999997433 3333222 2232 24789999999999999999999999
Q ss_pred HHHhhhhhcCChhH------HHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 245 LKSNRKTIMDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 245 l~~~~~~l~~D~~l------~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
++.|...+..|+++ ..|+..|.+++++||++.+++||++|+|++||+.||+|++++|.++++||.+|+|+|+||
T Consensus 315 ~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akID 394 (445)
T 4b4t_P 315 QKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVN 394 (445)
T ss_dssp HHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEE
T ss_pred HHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEc
Confidence 99998888888776 789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHhh
Q 018294 319 QVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSN 355 (358)
Q Consensus 319 ~~~g~v~~~~~~~~~~~~~~l~~w~~~i~~l~~~v~~ 355 (358)
|++|+|+|.++... .+.+++|+++|++|+..|+.
T Consensus 395 q~~giV~F~~~~~~---~~~l~~W~~~i~~l~~~v~k 428 (445)
T 4b4t_P 395 RPAKIVNFEKPKNS---SQLLNEWSHNVDELLEHIET 428 (445)
T ss_dssp TTTTEEEC-----------------------------
T ss_pred CCCCEEEECCCCCh---HHHHHHHHHHHHHHHHHHHH
Confidence 99999999887654 58899999999999999864
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-44 Score=348.80 Aligned_cols=308 Identities=12% Similarity=0.169 Sum_probs=247.1
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHH
Q 018294 38 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 117 (358)
Q Consensus 38 ~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 117 (358)
.|.....++.+.+...-+....+..|.+...++|++|++.||+++|.+.+.+++++|+.+ ..++++++.++
T Consensus 105 ~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---------~~kid~~l~~i 175 (429)
T 4b4t_R 105 KNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---------GAKIDVMLTIA 175 (429)
T ss_dssp CSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---------CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHH
Confidence 334445555544444322222334566888999999999999999999999999999753 56899999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Q 018294 118 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 197 (358)
Q Consensus 118 ~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~~~~~l~y~~l 197 (358)
|+++..+|+..++.+++++........+|..+++++.|+|+++++.|+|.+|+++|+++|.+|+..+...+..++.|+++
T Consensus 176 rl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l 255 (429)
T 4b4t_R 176 RLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASV 255 (429)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999998888888999999999
Q ss_pred HHHhhCCCC----CCcCCcccccCC-CCccHHHHHHHHHHHHhCCHHHHHH-HHHHhhhhhcCChhHHHHHHHHHHHHHH
Q 018294 198 ANMLMESEV----NPFDGQEAKPYK-NDPEILAMTNLIAAYQRNEIIEFEK-ILKSNRKTIMDDPFIRNYIEDLLKNVRT 271 (358)
Q Consensus 198 ~~lL~~~~~----~~~~~~~~~~~~-~~p~~~~l~~L~~af~~~d~~~f~~-~l~~~~~~l~~D~~l~~~~~~L~~~i~~ 271 (358)
|++++.+.. +++.++++..+. .+|.++++..++.+|+.+++..|.+ .+..+...+..|+++++|++.|+++||+
T Consensus 256 ~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~ 335 (429)
T 4b4t_R 256 TGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRR 335 (429)
T ss_dssp HHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHH
Confidence 999875432 367777776664 4688999999999999999999866 4566777889999999999999999999
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHH----HHHHHH
Q 018294 272 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK----WNSQLR 347 (358)
Q Consensus 272 ~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~----w~~~i~ 347 (358)
+++.++++||++|+|++||+.||+|++++|.+|++||.+|+|+|+||+++|+|+++++++++.+|+++.+ +.++++
T Consensus 336 ~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riq 415 (429)
T 4b4t_R 336 KVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQ 415 (429)
T ss_dssp HHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----------------------
T ss_pred HHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999889988765 567888
Q ss_pred HHHHHHh
Q 018294 348 SLYQTVS 354 (358)
Q Consensus 348 ~l~~~v~ 354 (358)
++.+.|.
T Consensus 416 kl~~~i~ 422 (429)
T 4b4t_R 416 KYGAAVR 422 (429)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 8887764
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-39 Score=309.27 Aligned_cols=341 Identities=20% Similarity=0.318 Sum_probs=276.9
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHhhhchHh
Q 018294 2 MDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~la~~~~~~g~~~ 81 (358)
+++|++++++. +.+++++++++++..++.+...++ +.+....+++.+.+......+...+.++..+||.+|.+.|+|.
T Consensus 75 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 75 REFIPHSTEYM-MQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHHTHHHH-HTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHH-HHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH
Confidence 57889999999 899999999999999999987665 2344455555555543333334466788889999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC-hhhhHHHhhhhhhhH
Q 018294 82 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMH 160 (358)
Q Consensus 82 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~-~~~~~~i~~~~g~~~ 160 (358)
+|.++++++...+... ++ ....+++++.++++|...||+.+|+.+++++.++..++++ +..++.++.++|.++
T Consensus 153 ~A~~~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 153 DSLALINDLLREFKKL---DD---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HHHHHHHHHHHHHTTS---SC---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc---cc---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 9999999999998764 34 3778999999999999999999999999999998888776 577899999999999
Q ss_pred hhhhcHHHHHHHHHHHhhhhhhhcc----hhHHHHHHHHHHHHHhhCCCC---CCcCCcccccCCCCccHHHHHHHHHHH
Q 018294 161 MAERQWADAATDFFEAFKNYDEAGN----QRRIQCLKYLVLANMLMESEV---NPFDGQEAKPYKNDPEILAMTNLIAAY 233 (358)
Q Consensus 161 ~~~~~y~~A~~~f~e~~~~~~~~~~----~~~~~~l~y~~l~~lL~~~~~---~~~~~~~~~~~~~~p~~~~l~~L~~af 233 (358)
.+.++|.+|+.+|.++|++++..+. +.+..+++|+++|.++.+... +++.++....+...|+++++..+..+|
T Consensus 227 ~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAY 306 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 9999999999999999999987654 357788889999998764321 235555555665678899999999999
Q ss_pred HhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcc
Q 018294 234 QRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 313 (358)
Q Consensus 234 ~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i 313 (358)
.++++..|+..+..+...+..|+++..|+..+.++++++++.++++||++|++++||+.||+|++++|.+|++||.+|.|
T Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i 386 (434)
T 4b4t_Q 307 NNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIF 386 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSS
T ss_pred HhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCEEEEccCCccchHHHHHHHHHHHHHHHH
Q 018294 314 DGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLY 350 (358)
Q Consensus 314 ~akID~~~g~v~~~~~~~~~~~~~~l~~w~~~i~~l~ 350 (358)
+|+||+++|+|++.++++....|+...+..++++++.
T Consensus 387 ~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~v 423 (434)
T 4b4t_Q 387 YGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVV 423 (434)
T ss_dssp CCEEETTTTEEECC-----------------------
T ss_pred ceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877666665555544444443
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-31 Score=253.23 Aligned_cols=277 Identities=18% Similarity=0.220 Sum_probs=197.7
Q ss_pred hhchHhHHHHHHHHHHHhcccCCCCcc-----hhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC--Chhh
Q 018294 76 DMGEYGRMSKILKELHKSCQREDGTDD-----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRI 148 (358)
Q Consensus 76 ~~g~~~~a~~~l~~l~~~~~~~~~~~~-----~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~--~~~~ 148 (358)
...+.++|.++|.++...+...++... +......+.+.+..++.|+..||...|+.+++++.+..+... +|.+
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v 167 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRI 167 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHH
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHH
Confidence 345778888999888765532111000 000133566777888999999999999999999988766554 5788
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhh--cchhHHHHHHH-HHHHHHhhCCCCCCcCCcc----cccCCCCc
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKY-LVLANMLMESEVNPFDGQE----AKPYKNDP 221 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~--~~~~~~~~l~y-~~l~~lL~~~~~~~~~~~~----~~~~~~~p 221 (358)
++.+..+.|.++...++|..++.+++..+.+++.. .++.....+.| +++|++++++ +.+|+... +....++|
T Consensus 168 ~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~-i~~f~eLL~~p~i~~L~~~~ 246 (393)
T 4b4t_O 168 TNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDK-IYNFGELLHHPIMETIVNDS 246 (393)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCS-SCSTHHHHHSCCTTSSCSSS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCC-CCChHHHhCChHHHHhhcCC
Confidence 99999999999999999999999999998887743 34555566666 7777777543 44554333 33344578
Q ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhc--ccccccchhhHHhHhCCChHH
Q 018294 222 EILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KPYTRIRIPFISKELNVPEKD 299 (358)
Q Consensus 222 ~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~--~~y~~I~l~~la~~l~l~~~~ 299 (358)
+..|+.+|+.+|..|++..|...++.+.+ ..|++..|...+.+++|..++..++ ++|++|+++.||+.+|+|+++
T Consensus 247 ~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~---~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~e 323 (393)
T 4b4t_O 247 NYDWLFQLLNALTVGDFDKFDSLIKVQIS---KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDN 323 (393)
T ss_dssp STTHHHHHHHHHHHTCHHHHHHHCCHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHhhh---hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHH
Confidence 99999999999999999999998876644 3589999999999999999999877 568999999999999999999
Q ss_pred HHHHHHHhhhcCccceeeeccCCEEEEcc-------CCccchHHHHHHHHHHHHHHHHHHHhhh
Q 018294 300 VEQLLVSLILDNRIDGHIDQVNRLLERGD-------RSKGMKKYTAIDKWNSQLRSLYQTVSNR 356 (358)
Q Consensus 300 vE~~l~~lI~~g~i~akID~~~g~v~~~~-------~~~~~~~~~~l~~w~~~i~~l~~~v~~~ 356 (358)
||.++++||.+|+|+|+|||++|+|+++| ++++..+.++|..|+++++++...|+++
T Consensus 324 vE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~ 387 (393)
T 4b4t_O 324 VEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEAR 387 (393)
T ss_dssp HHHHHHHHHHHSCSSSCEETTTTEECC-------------------------------------
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986 4566678899999999999999999875
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-23 Score=202.45 Aligned_cols=290 Identities=13% Similarity=0.150 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhhhhhhHH---HhhhhhHHHHhhhchHhH---HH-HHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHH
Q 018294 47 YQTTLKALEEAKNERLWF---KTNLKLCKIWFDMGEYGR---MS-KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 119 (358)
Q Consensus 47 ~~~~~~~i~~~~~~r~~~---~~~~~la~~~~~~g~~~~---a~-~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 119 (358)
-..+++.+.+ |+|| +..-.++++....+.... .. .++..++..|-.- |+ .-..-++-+..|.
T Consensus 172 nrrtlD~l~a----k~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~---D~----~~qa~l~nllLRn 240 (523)
T 4b4t_S 172 NLRSLNLINA----KLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH---DN----ETKAMLINLILRD 240 (523)
T ss_dssp -----------------------------------CHHHHHHHHTHHHHHHHHCCSCS---SS----CHHHHHHHHHHHH
T ss_pred hHHhHHHHHH----HHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc---Cc----chhHHHHHHHHHH
Confidence 3445554433 7776 333344555443332222 22 3445555554322 22 2234566678899
Q ss_pred HHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhh--cchhHHHHHHHHHH
Q 018294 120 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKYLVL 197 (358)
Q Consensus 120 ~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~--~~~~~~~~l~y~~l 197 (358)
|+..+.+..|..++.++. ....-.....+..+..|.|++++.+++|.+|..+|..+++.++.. .......++||+++
T Consensus 241 YL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~ 319 (523)
T 4b4t_S 241 FLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCC 319 (523)
T ss_dssp HHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHh
Confidence 999999999998888763 111101223347888999999999999999999999999866432 33478899999999
Q ss_pred HHHhhCCCCCCcCCcccccCCCCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHh
Q 018294 198 ANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKL 277 (358)
Q Consensus 198 ~~lL~~~~~~~~~~~~~~~~~~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~ 277 (358)
|.||.+.... ...+..+.....+.++..|.+||..||+..|...+++|+..|..|+... .+..+...+..++++++
T Consensus 320 V~LLlG~iP~---r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~-LI~rLr~~vir~~irki 395 (523)
T 4b4t_S 320 IQLLMGDIPE---LSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ-LCVRLRSNVIKTGIRII 395 (523)
T ss_dssp HHHHHTCCCC---HHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH-HHHHHHHHHHHHHHHHS
T ss_pred HHhhcCCCCC---hHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhH-HHHHHHHHHHHHHHHHH
Confidence 9999755321 1111222212346678899999999999999999999999999998764 67888999999999999
Q ss_pred cccccccchhhHHhHhCCC-hHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHHHHHHHHHHHHH
Q 018294 278 IKPYTRIRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQT 352 (358)
Q Consensus 278 ~~~y~~I~l~~la~~l~l~-~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~w~~~i~~l~~~ 352 (358)
..+|++|++++||..++++ ++++|.++++||.+|.|+|+||+.+|+|++.+.++.-.+.+....+..+|+..+++
T Consensus 396 s~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L 471 (523)
T 4b4t_S 396 SLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQL 471 (523)
T ss_dssp CCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC--------------------
T ss_pred HHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 78899999999999999999999999999987655444444455555566544443
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=172.33 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=143.4
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCcCCcccccCCCCccHHHHHH
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTN 228 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~~~~~l~y~~l~~lL~~~~~~~~~~~~~~~~~~~p~~~~l~~ 228 (358)
+..+..|.|++++.+++|.+|..+|.++|..++..+..++..+++|++++.||.+. +.++.. ..+|... .+..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~l--l~~~~~~----~y~~ 85 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH-MPTVEL--LKKYHLM----QFAE 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC-EECHHH--HHHTTCG----GGHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC-CCCHHH--hhhCchh----HHHH
Confidence 35788899999999999999999999999999887777899999999999999865 422211 1234321 3779
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcc------cccccchhhHHhHhC------CC
Q 018294 229 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIK------PYTRIRIPFISKELN------VP 296 (358)
Q Consensus 229 L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~------~y~~I~l~~la~~l~------l~ 296 (358)
|++|+.+||+..|++.+++++.. |+..++-.+.+++|..+++.+++ +|++|+++.++.+++ ++
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~-----f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAF-----FIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHH-----HHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHhHHH-----HHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 99999999999999999998754 45555566788999988888876 799999999999995 48
Q ss_pred hHHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 297 EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 297 ~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
.+|+|.++++||.+|.|+|+||+.+|+++++..+
T Consensus 161 ~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 161 IDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred HHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 9999999999999999999999999999998654
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.5e-19 Score=171.29 Aligned_cols=242 Identities=17% Similarity=0.184 Sum_probs=182.8
Q ss_pred hHhHHHHHHHHHHHhcccCCCCc-chh---hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC----hhh-h
Q 018294 79 EYGRMSKILKELHKSCQREDGTD-DQK---KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH----PRI-M 149 (358)
Q Consensus 79 ~~~~a~~~l~~l~~~~~~~~~~~-~~~---~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~----~~~-~ 149 (358)
..++|+.++.+.-..|-.+.+.+ +.+ ++...+-+.....++|++.|+..-|+.+++..... +-+++ |.- +
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccce
Confidence 46889999999999986543321 112 45666666677789999999999999998765443 21211 332 3
Q ss_pred HHHhhhhhhhHhhhhcHHHHHHHHHHHhhh-hhhh-----cchhHHHHHHHHHHHHHhhCCCCCCcCCcccccCCCCccH
Q 018294 150 GIIRECGGKMHMAERQWADAATDFFEAFKN-YDEA-----GNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEI 223 (358)
Q Consensus 150 ~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~-~~~~-----~~~~~~~~l~y~~l~~lL~~~~~~~~~~~~~~~~~~~p~~ 223 (358)
..+..|.|++++.+++|.+|..+|.+||+. ++.. ...+...+++|++++.||.+.-.++ +...+.+ +|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~--~ll~k~~--~~~L 295 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKW--GPLRPFL--SQET 295 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCH--HHHGGGS--CHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCH--HHHcccc--hHHH
Confidence 578899999999999999999999999998 6643 2346788999999999997653221 1111223 3677
Q ss_pred HH-HHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHH--------HHhcccc--cccchhhHHhH
Q 018294 224 LA-MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVL--------LKLIKPY--TRIRIPFISKE 292 (358)
Q Consensus 224 ~~-l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l--------~~~~~~y--~~I~l~~la~~ 292 (358)
.. +..|++|+..||+..|.+.+++++..|..+..+ -.+.+++|..++ ..+..+| ++|+++.++.+
T Consensus 296 ~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gil----y~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~a 371 (455)
T 3t5v_B 296 IDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLL----IVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERV 371 (455)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHH
Confidence 76 889999999999999999999998866665542 344444444433 3345678 89999999999
Q ss_pred hC---------------------CChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 293 LN---------------------VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 293 l~---------------------l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
++ ++.+++|.++++||.+|.|+|+||+.+|++++++.
T Consensus 372 L~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 372 LQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 97 58899999999999999999999999999999876
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.71 E-value=4e-18 Score=126.59 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCcc
Q 018294 260 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG 332 (358)
Q Consensus 260 ~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~ 332 (358)
.|+..|.+++.++|++.+++||++|++++||+.|++|++++|.+|++||.+|+|.|+|||++|+|+|.++++.
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 3678899999999999999999999999999999999999999999999999999999999999999876653
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.37 E-value=1.4e-12 Score=109.67 Aligned_cols=128 Identities=14% Similarity=0.223 Sum_probs=101.7
Q ss_pred HHHHHHHHhhCCCCCCcC----CcccccCCCCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHH
Q 018294 193 KYLVLANMLMESEVNPFD----GQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKN 268 (358)
Q Consensus 193 ~y~~l~~lL~~~~~~~~~----~~~~~~~~~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~ 268 (358)
.-++++++.+++.++ |. .+.+.... ++...|+.+|++.|..|++..|...-.. + |.|. +.+.++
T Consensus 27 ~~li~~Al~~p~vf~-F~eLL~~p~v~~L~-~~~~~~~~~LL~iF~~G~~~~y~~~~~~----~---p~L~---~~~~~K 94 (169)
T 3chm_A 27 GPLIIEATSHPSLFA-FSEILALPNVAQLE-GTTDSVYLDLLRLFAHGTWGDYKCNATR----L---PHLS---PDQILK 94 (169)
T ss_dssp HHHHHHHHHCTTCCC-CHHHHTCHHHHTTT-TSTTHHHHHHHHHHHHCCHHHHHHHGGG----S---CCCC---HHHHHH
T ss_pred HHHHHHHhcCCCeee-hHHHhCChHHHHhc-CCChhHHHHHHHHHhcCCHHHHHHhHHh----C---cchH---HHHHHH
Confidence 447788887655443 32 22222233 3457899999999999999999874322 1 2232 678899
Q ss_pred HHHHHHHHhcccccccchhhHHhHhCCC-hHHHHHHHH-HhhhcCccceeeeccCCEEEEccCCcc
Q 018294 269 VRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLV-SLILDNRIDGHIDQVNRLLERGDRSKG 332 (358)
Q Consensus 269 i~~~~l~~~~~~y~~I~l~~la~~l~l~-~~~vE~~l~-~lI~~g~i~akID~~~g~v~~~~~~~~ 332 (358)
+|...++.++...+.|+++.|++.++++ +++||.+++ ++|..|.|.|+|||++++|+++|-.++
T Consensus 95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 9999999999888999999999999999 999999999 999999999999999999999986544
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.63 E-value=9.5e-07 Score=78.10 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=123.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhh---hccCCC---h-h--hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhh--hcchh
Q 018294 119 MYTETKNNKKLKQLYQKALAI---KSAIPH---P-R--IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQR 187 (358)
Q Consensus 119 ~~~~~~d~~~a~~~l~~a~~~---~~~~~~---~-~--~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~--~~~~~ 187 (358)
-.+..+|+.+|...+.+.+.- .+..++ + . +.-.+.+.++++.+..+|..+=.+++.....-|.. .+.++
T Consensus 16 ~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~ 95 (229)
T 4b0z_A 16 DLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSR 95 (229)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCcc
Confidence 345788999999998876531 122111 1 1 12356677888888877765544444444333433 23456
Q ss_pred HHHHHHHHHHHHHhhCCCC--CCcCCcccc-c-CCCCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHH
Q 018294 188 RIQCLKYLVLANMLMESEV--NPFDGQEAK-P-YKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIE 263 (358)
Q Consensus 188 ~~~~l~y~~l~~lL~~~~~--~~~~~~~~~-~-~~~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~ 263 (358)
...+++|-+|..++.++.. +.+-..... . ...+|.+.....|.+++..|+|.+|.+...... .+...-.++
T Consensus 96 ~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~~~~~ 170 (229)
T 4b0z_A 96 MGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFSYFMK 170 (229)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHHHHHH
Confidence 7788888778777654321 111000000 0 123677888889999999999999999877532 223344567
Q ss_pred HHHHHHHHHHHHHhcccccccchhhHHhHhCC-ChHHHHHHHHH
Q 018294 264 DLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVS 306 (358)
Q Consensus 264 ~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l-~~~~vE~~l~~ 306 (358)
.|..++|..++..+.+.|++|+++++++.||+ ++++++..+.+
T Consensus 171 ~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999 57889988887
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=0.00045 Score=54.85 Aligned_cols=111 Identities=15% Similarity=0.006 Sum_probs=84.2
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|.+.+........... + ......++.....++...|++.+|..++.++........
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---C---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 4456799999999999999999988877664321 1 244566677778888899999999999999887765555
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~ 181 (358)
++..........|.++...++|.+|..+|-++...+.
T Consensus 124 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555555556668888999999999998888765443
No 13
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.96 E-value=0.00045 Score=61.94 Aligned_cols=112 Identities=16% Similarity=0.030 Sum_probs=80.3
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|.+.+.+......... + .......+.....++...|++.+|..+++++........
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---c---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 4456788889999999999988888777654321 1 244566677777888889999999999988877655444
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 182 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~ 182 (358)
++..........|.++...|+|.+|...|-++...+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44444455556688888889999999888887665443
No 14
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.95 E-value=0.0066 Score=54.64 Aligned_cols=188 Identities=10% Similarity=0.001 Sum_probs=118.6
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhccC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIKSAI 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~d~~~a~~~l~~a~~~~~~~ 143 (358)
..-..+|.+|...|++++|...++......... | + .......+.....+|... |++.+|..+|+++..+....
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g--~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G--Q---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--C---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C--C---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 334579999999999999999998877765321 1 1 233456666777888885 99999999999998875544
Q ss_pred CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch--hHHHHHHHHHHHHHhhCCCCC----CcCCc-cc-c
Q 018294 144 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ--RRIQCLKYLVLANMLMESEVN----PFDGQ-EA-K 215 (358)
Q Consensus 144 ~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~--~~~~~l~y~~l~~lL~~~~~~----~~~~~-~~-~ 215 (358)
.++...+.....-|.++...++|.+|...|-.+.......... .....+..+++|-.-.+ .+. -+..- .. .
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSEDP 230 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC--
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence 3433333344445889999999999999999887644332221 11222222333333211 110 01000 00 0
Q ss_pred cCCCCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHH
Q 018294 216 PYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 259 (358)
Q Consensus 216 ~~~~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~ 259 (358)
.+....+...+..+..++..++...|.+.+..+...+..||...
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 11111223456778889988999999999999987778888653
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.94 E-value=0.0012 Score=61.31 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=92.0
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|...+.+......... + .......+.....++...|++.+|..++.++..+.....
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc---C---chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 4556899999999999999999998887654321 1 244567777888899999999999999999988766665
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
++..........|.++...|+|.+|..+|-++...+...+..
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 555555566667889999999999999999988777666554
No 16
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.86 E-value=0.0007 Score=53.68 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=90.1
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|.++...|++++|.+.+.+......... + .......+.....++...|++.+|..++.++........
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---D---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC---C---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 3456799999999999999999998887764321 1 244566777788889999999999999999988766666
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcc
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 185 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~ 185 (358)
++..........|.++...++|.+|...|-++.......++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 66655666666789999999999999999988766554444
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.85 E-value=0.00088 Score=62.73 Aligned_cols=116 Identities=11% Similarity=-0.030 Sum_probs=90.5
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|.+.+++........ .+ .......+.....++...|++.+|..+++++..+.....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL---GE---REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---CC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 445689999999999999999999888776432 11 244567777888899999999999999999987765554
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
++..........|.++...|+|.+|..+|-++...+...+++
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXX 379 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 544445555566889999999999999999988777666554
No 18
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.82 E-value=0.0024 Score=59.58 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=95.9
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|.++...|++++|.+.+.+........ .+ ......++.....+|..+|++.+|..++.++..+.....
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 445679999999999999999999888776543 12 245666777788899999999999999999988766555
Q ss_pred C-hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHh
Q 018294 145 H-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 201 (358)
Q Consensus 145 ~-~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~~~~~l~y~~l~~lL 201 (358)
+ |.. ......-|.++...|+|.+|..+|-++.......+++..... +..++.+.
T Consensus 259 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~ 313 (383)
T 3ulq_A 259 ILPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLY 313 (383)
T ss_dssp CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH
T ss_pred cchhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 5 443 444455688999999999999999998877666666544333 33355553
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.81 E-value=0.0017 Score=54.12 Aligned_cols=140 Identities=10% Similarity=0.042 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHH
Q 018294 42 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 121 (358)
Q Consensus 42 ~~~~~~~~~~~~i~~~~~~r~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 121 (358)
.-...++..++.................+|.++...|++++|.+.+.+........ + ++ .......+.....++.
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~---~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-P-ED---PLAASANAYEVATVAL 118 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C-CC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-cc---HHHHHHHHHHHHHHHH
Confidence 34444554444333222222233455679999999999999999999888775432 1 11 1345667777788899
Q ss_pred HhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 122 ETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 122 ~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
..|++.+|..++.++........++...+......|.++...|+|.+|..+|-++...+...+++
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999987766566666555555667899999999999999999998877777665
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.77 E-value=0.0017 Score=60.57 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=91.2
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|.++...|++++|.+.+.+........ .+ ......++.....+|...|++.+|..++.++..+.....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 256 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV 256 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 445689999999999999999998888766432 11 245666777788889999999999999999987655444
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchhHHH
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 190 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~~~~ 190 (358)
+|.. ......-|.++...|+|.+|..+|-++.......+++....
T Consensus 257 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 257 PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5554 44455568899999999999999999887666655554433
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.74 E-value=0.0052 Score=54.78 Aligned_cols=116 Identities=8% Similarity=-0.016 Sum_probs=88.2
Q ss_pred HhhhhhHHHHhhhch--------------------HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhc
Q 018294 65 KTNLKLCKIWFDMGE--------------------YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 124 (358)
Q Consensus 65 ~~~~~la~~~~~~g~--------------------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 124 (358)
.....+|.++...|+ +++|.+.+.+......... + ......++.....++...|
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG---D---RAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT---C---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC---C---HHHHHHHHHHHHHHHHHhC
Confidence 455689999999999 9999999888776553321 1 2445667777888999999
Q ss_pred CHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 125 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 125 d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
++.+|..++.++........++..........|.++...++|.+|...|-++...+...+++
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 99999999999987655544555555566667889999999999999999887665554443
No 22
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.70 E-value=0.0078 Score=55.63 Aligned_cols=116 Identities=8% Similarity=-0.021 Sum_probs=90.6
Q ss_pred HhhhhhHHHHhhhch--------------------HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhc
Q 018294 65 KTNLKLCKIWFDMGE--------------------YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 124 (358)
Q Consensus 65 ~~~~~la~~~~~~g~--------------------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 124 (358)
.+...+|.++...|+ +++|.+.+.+......... + .......+.....++...|
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG---D---RAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---C---cHHHHHHHHHHHHHHHHcc
Confidence 455689999999999 9999999988777654321 1 2456677778888999999
Q ss_pred CHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 125 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 125 d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
++.+|..++.++........++...+......|.++...++|.+|...|-++...+...+++
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 99999999999988766666655555566667889999999999999999987665554443
No 23
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.68 E-value=0.0056 Score=57.15 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=88.6
Q ss_pred HHhhhhhHHHHhhhch-----------------HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCH
Q 018294 64 FKTNLKLCKIWFDMGE-----------------YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNN 126 (358)
Q Consensus 64 ~~~~~~la~~~~~~g~-----------------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~ 126 (358)
......+|.++...|+ +++|.+.+.+......... + .......+.....++...|++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---D---RGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---C---HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHHHHHHcCCh
Confidence 3455689999999999 9999998888776543221 1 244566777788899999999
Q ss_pred HHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 127 KKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 127 ~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
.+|..++.++........++..........|.++...++|.+|...|-++.......++.
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999987665544544445556667889999999999999999987766554443
No 24
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.67 E-value=0.013 Score=53.15 Aligned_cols=183 Identities=12% Similarity=0.104 Sum_probs=112.6
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
..-..+|.+|...|++++|...++......... | + .......+.....+|.. |++.+|..+|+++..+.....
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g--~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-G--T---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T--C---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C--C---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence 344578999999999999999998877654321 1 1 13345666666777877 999999999999988765444
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchh-HHHHHHHHHHHHHhhCCCCC----CcCCc-ccccCC
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR-RIQCLKYLVLANMLMESEVN----PFDGQ-EAKPYK 218 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~-~~~~l~y~~l~~lL~~~~~~----~~~~~-~~~~~~ 218 (358)
++...+.....-|.++...++|.+|..+|-++...+...+... ....+..++++-+ ...++. .+..- ....+.
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~p~~~ 228 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYVAAQKCVRESYSIPGFS 228 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSTTST
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhCCCCCC
Confidence 4444444445558899999999999999999877655443321 1112222333333 111211 01100 001122
Q ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCCh
Q 018294 219 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDP 256 (358)
Q Consensus 219 ~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~ 256 (358)
..++...+..++.++..+|...|.. +..+......|+
T Consensus 229 ~~~e~~~l~~l~~~~~~~d~~~~~~-~~~~~~~~~ld~ 265 (307)
T 2ifu_A 229 GSEDCAALEDLLQAYDEQDEEQLLR-VCRSPLVTYMDN 265 (307)
T ss_dssp TSHHHHHHHHHHHHHHTTCHHHHHH-HTTSHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHH-HHhCchhhhhhH
Confidence 1234455778888999999988887 433443333444
No 25
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.63 E-value=0.0018 Score=60.50 Aligned_cols=126 Identities=14% Similarity=0.028 Sum_probs=96.3
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|...+.+.........+ . .......+.....+|...|++.+|..++.++..+.....
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--Y---SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--c---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 44457999999999999999999988877653211 0 134667777778889999999999999999988776666
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchhHHHHHHHH
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 195 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~~~~~l~y~ 195 (358)
++...+.....-|.++...++|.+|..+|-++...+...+++....++..+
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 666566666667999999999999999999998766655666544443333
No 26
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.61 E-value=0.0069 Score=54.96 Aligned_cols=106 Identities=8% Similarity=-0.008 Sum_probs=79.9
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.+|.. |++++|.+.+++........ + + ......++.....++..+|++.+|..+++++..+.....
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~--~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E--R---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C--C---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 444579999999 99999999999888765432 1 1 234567777778899999999999999999987654443
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAF 177 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~ 177 (358)
.+..........|.++...++|.+|..+|-++.
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 322233344556788888899999999999887
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.60 E-value=0.0025 Score=59.47 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=95.7
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|.+.+........... +. .......+.....+|...|++.+|..++.++..+.....
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--AY---NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS--TT---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--cc---hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 4446899999999999999999999888765431 11 244567777778889999999999999999988776666
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcc-hhHHHHH
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCL 192 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~-~~~~~~l 192 (358)
++...+.....-|.++...++|.+|..+|-++...+...++ +....++
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 66666666666799999999999999999999876655555 5444443
No 28
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.59 E-value=0.0049 Score=53.71 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHh--hhhhhHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHH
Q 018294 40 FSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 117 (358)
Q Consensus 40 ~~~~~~~~~~~~~~i~~~--~~~r~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 117 (358)
.+.-...++..++..... .+..........+|.++...|++++|.+.+.+.........+.+ .......+....
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la 134 (283)
T 3edt_B 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF----HPDVAKQLNNLA 134 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC----ChHHHHHHHHHH
Confidence 333444555544432221 11222335556899999999999999999988877653221111 144677777888
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhccC--CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 118 QMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 118 ~~~~~~~d~~~a~~~l~~a~~~~~~~--~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.++...|++.+|..++.++....... .++..........|.++...++|.+|...|-++....
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999998763322 1122233444556889999999999999999887643
No 29
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.56 E-value=0.00095 Score=52.45 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=77.4
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC-Ch
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP 146 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~-~~ 146 (358)
..||..++..|+|++|.+.+.......++ ....+.....+|..+|++.+|...+.++..+..... +.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 36999999999999999999988776321 134556667889999999999999999987654322 33
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
...+......|..+...++|.+|...|-.+..
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555668999999999999999988765
No 30
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.012 Score=52.00 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=82.3
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~- 143 (358)
.....+|.++...|++++|.+.+.+.........|.+ .......+.....++...|++.+|..++.++.......
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD----HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4456799999999999999999998887653211111 14456777778889999999999999999997764333
Q ss_pred -CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 144 -PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 144 -~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.++..........|.++...++|.+|...|-++....
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1222233444556888999999999999999987643
No 31
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.50 E-value=0.0032 Score=56.61 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=88.4
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
+...+|.+|...|+|++|...+..........++ + ......++.....+|..+|++.+|..+++++..+.....+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--c---hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 4457999999999999999999988876543211 1 3566778888889999999999999999999887655444
Q ss_pred hhhhHHHhhhhhhhHhhhh-cHHHHHHHHHHHhhhhhhhcc
Q 018294 146 PRIMGIIRECGGKMHMAER-QWADAATDFFEAFKNYDEAGN 185 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~-~y~~A~~~f~e~~~~~~~~~~ 185 (358)
....+.....-|.++...| +|.+|..+|-++..-+...++
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4444566666788899888 579999999888765554444
No 32
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.48 E-value=0.005 Score=51.17 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=89.8
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|.++...|++++|...+.+......... + .......+.....++...|++.+|..++.++........
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---D---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---C---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 3345689999999999999999999888765321 1 245667777788899999999999999999988766555
Q ss_pred -ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcch
Q 018294 145 -HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 186 (358)
Q Consensus 145 -~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~ 186 (358)
+|...+......|.++...++|.+|..+|-++.......+++
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 444455555666899999999999999999987765555544
No 33
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.41 E-value=0.0046 Score=55.58 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=86.0
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|.+|...|+|++|...+..........+ ++ ......++.....+|..+|++.+|..+++++..+.....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DN---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--cc---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 3445789999999999999999998885543221 11 122346777888899999999999999999988764443
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHH-HHHHHHHhhhhhhhcchh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAGNQR 187 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A-~~~f~e~~~~~~~~~~~~ 187 (358)
++...+......|.++...++|.+| ..+|-.+..-+...+.+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~ 274 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHh
Confidence 4444455666679999999999999 555666766555555543
No 34
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.41 E-value=0.011 Score=52.46 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=77.8
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~- 143 (358)
.....+|.++...|++++|.+.+.+.........+.+ .......+.....++...|++.+|..+++++.......
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 4455799999999999999999999887754332221 24456777788899999999999999999987642110
Q ss_pred -------------------------------------------CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 144 -------------------------------------------PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 144 -------------------------------------------~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.+|. ........|.++...|+|.+|...|-+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0121 223334457788888999998888877654
No 35
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.38 E-value=0.011 Score=51.35 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 64 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 64 ~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
......+|.++...|++++|.+.+.+....+....+.+ .......+.....++...|++.+|..++.++...
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD----DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456799999999999999999998887753322211 2446677778889999999999999999998764
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.33 E-value=0.0019 Score=50.65 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=72.6
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+++....-+. ...++.....++..+|++.+|...++++..+. |.
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~ 79 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-----SK 79 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-----hh
Confidence 35899999999999999999988776321 24556666788899999999999999988763 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. ......-|.++...++|.+|...|-.+.+
T Consensus 80 ~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 80 F-IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 12334458899999999999999988865
No 37
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.28 E-value=0.038 Score=49.53 Aligned_cols=108 Identities=9% Similarity=0.022 Sum_probs=78.4
Q ss_pred hhhhhHHHHhhh-chHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 66 TNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 66 ~~~~la~~~~~~-g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
....+|.+|... |++++|...+++........ .+ ......++.....++..+|++.+|..+++++........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 445799999996 99999999999888765432 11 133456677778889999999999999999887643332
Q ss_pred Chh-hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 145 HPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 145 ~~~-~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
... .........|.++...++|.+|..+|-.+..-
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 211 11223344588899999999999998887653
No 38
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.25 E-value=0.025 Score=50.68 Aligned_cols=109 Identities=16% Similarity=0.063 Sum_probs=83.5
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-CChh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHPR 147 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~-~~~~ 147 (358)
.+|.++...|++++|.+.+.......... .+ ....+.++.....+|...|++.+|..++.++....... .++.
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTG---ID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCC---SC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhccc---cc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 58888889999999999999988854322 12 13456677777888999999999999999998765554 3444
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 183 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~ 183 (358)
....+....|.++...++|.+|..+|-++..-....
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 455556667999999999999999998887654433
No 39
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.25 E-value=0.0056 Score=46.98 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=75.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+..+....++. ....+.+......+...|++.+|...+.++...... ++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~ 74 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG---------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDK 74 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--Ccc
Confidence 468899999999999999999988764321 223455666678889999999999999988765321 111
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~ 181 (358)
........|.++...++|.+|...|-.+...++
T Consensus 75 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 122334458888999999999999988876553
No 40
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.22 E-value=0.027 Score=50.46 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=81.2
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC-
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 145 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~- 145 (358)
...+|.++...|++++|.+.+.......... .+ ......++.....+|...|++.+|..++.++..+....++
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTG---ID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS---SC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---Cc---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 3468888899999999999998887665432 11 1335667777888899999999999999999876544443
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
+..........|.++...++|.+|..+|-++....
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333455566889999999999999998887544
No 41
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0071 Score=54.53 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=103.7
Q ss_pred HHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhh----h-cchhHHHHHHHHHHHHHhhCCCC--CC-cC--CcccccCCCC
Q 018294 151 IIRECGGKMHMAERQWADAATDFFEAFKNYDE----A-GNQRRIQCLKYLVLANMLMESEV--NP-FD--GQEAKPYKND 220 (358)
Q Consensus 151 ~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~----~-~~~~~~~~l~y~~l~~lL~~~~~--~~-~~--~~~~~~~~~~ 220 (358)
.+.+.++++.+..+|+.+=.+++.....-|.. . .+++...++.|-+|..+..++.- +. +. ........++
T Consensus 60 ~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d 139 (274)
T 4b4t_T 60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDD 139 (274)
T ss_dssp -CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcC
Confidence 46678888999999987766666554333322 1 23466778888667665443321 10 10 1111223357
Q ss_pred ccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCC-ChHH
Q 018294 221 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKD 299 (358)
Q Consensus 221 p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l-~~~~ 299 (358)
|.+..-..+..++..|+|.+|.++...... -.+..+-..+.+..++|..++..+.+.|.+|+++.+++.|++ ++++
T Consensus 140 ~~Ik~al~le~al~eGnY~kff~l~~~~~~---p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e 216 (274)
T 4b4t_T 140 SLLSYPIKLDRWLMEGSYQKAWDLLQSGSQ---NISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKE 216 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHH
Confidence 888888899999999999999987764211 112233346778999999999999999999999999999999 5677
Q ss_pred HHHHHHH
Q 018294 300 VEQLLVS 306 (358)
Q Consensus 300 vE~~l~~ 306 (358)
+...+-+
T Consensus 217 ~~~F~~~ 223 (274)
T 4b4t_T 217 TEKFALE 223 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766655
No 42
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.02 Score=53.73 Aligned_cols=113 Identities=10% Similarity=-0.085 Sum_probs=84.0
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.++.++...|++++|.+++........... + ......++...+.+|...|++.+|..++..+........+...
T Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREK---R---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---C---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---c---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 466677777888888888877776654321 1 2345667777889999999999999999998876666555444
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcchh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 187 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~~~ 187 (358)
...+....|.++...++|.+|...|-.+.........+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 556667779999999999999999888776554444443
No 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.011 Score=45.33 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=73.7
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+.+.....+. -..++......+...|++.+|...++++.... |.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~ 70 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-----PN 70 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 46899999999999999999988877421 13556667788889999999999999988763 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. .......|.++...++|.+|...|..+....
T Consensus 71 ~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 F-VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 1 2233445888999999999999998887543
No 44
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.03 E-value=0.0099 Score=45.08 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=75.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-CCh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHP 146 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~-~~~ 146 (358)
..+|..+...|++++|...+.......+. ...++.....++...|++.+|..++.++....... .++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPT------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 46899999999999999999998876421 13455566778889999999999999987764332 222
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
..........|.++...++|.+|...|-.+...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222444555688899999999999999888754
No 45
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.00 E-value=0.0019 Score=45.11 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=52.6
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
.+..+++.-+.+.++++|..||++.+++-.-|-.+...|+|.|.||-..+.|+++...
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 3467788889999999999999999999999999999999999999999999987653
No 46
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.99 E-value=0.0025 Score=51.46 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=67.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
+.+|.+|+..|+|++|.+.+......-++ ..+.+.....+|...|++.+|...+.++..+... ++.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 100 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER------------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT--QKD 100 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--CHH
Confidence 46899999999999999999988877321 2445566677888999999999999998876321 222
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHH
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFE 175 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e 175 (358)
.....|.++...++|.+|+..|++
T Consensus 101 ----~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 101 ----LVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp ----HHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred ----HHHHHHHHHHHcCChHHHHHHHHH
Confidence 223347778888999888888865
No 47
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.96 E-value=0.013 Score=47.54 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=75.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..++..|+|++|.+.+......... ...++.....+|...|++.+|...++++..+. |
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p 76 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-----P 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C
Confidence 346899999999999999999998877431 24556667788899999999999999988763 2
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.. .......|.++...++|.+|..+|..+....
T Consensus 77 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 77 KY-SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 21 2233445888999999999999999987644
No 48
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.87 E-value=0.015 Score=44.98 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=73.4
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|...+.......+. ...++.....++...|++.+|...+.++.... |.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~ 75 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALELD-----GQ 75 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcC------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----ch
Confidence 46899999999999999999988877421 13456666788889999999999999987753 21
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
........|.++...++|.+|...|..+....
T Consensus 76 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 76 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 12234445888899999999999998887543
No 49
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.87 E-value=0.025 Score=44.69 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=72.2
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+..+...-+. -..++.....++...|++..|...++++...... +|.
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 87 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHY------------DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPR 87 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcH
Confidence 46889999999999999999988776321 1344555667888999999999999998876321 222
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.....|.++...|+|.+|...|-.+....
T Consensus 88 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 88 ----FPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23345888999999999999998876543
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.83 E-value=0.012 Score=47.79 Aligned_cols=96 Identities=10% Similarity=0.028 Sum_probs=74.4
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..++..|+|++|.+.++.+...-+. ..+.+.....++...|++.+|...|+++..+... +|
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~ 104 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DY 104 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--Cc
Confidence 357899999999999999999998877321 2345556667888999999999999999876432 22
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. .....|..+...|+|.+|...|-.+....
T Consensus 105 ~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 105 T----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 33345888999999999999999887543
No 51
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.81 E-value=0.04 Score=53.88 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=80.7
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC---CC
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI---PH 145 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~---~~ 145 (358)
..+.-+...|+|++|..++.+........-|.+. ...+..+-....+|..+|++.+|..++.++..+...+ .+
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H----p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTN----LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3455566889999999999888776554444332 5577888888899999999999999999998765443 35
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
|.+-..+. --|.++..+|+|.+|...|-.++..+
T Consensus 390 p~~a~~l~-nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 390 AQLGMAVM-RAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 66543333 33888999999999999888876544
No 52
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.77 E-value=0.23 Score=45.46 Aligned_cols=109 Identities=7% Similarity=-0.060 Sum_probs=79.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.+.+.........+.. .......+.....++...|++.+|..++.++........++
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ----LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 45789999999999999999998887654321110 02244455556678889999999999999998765544333
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. ........|.++...|+|.+|...|-++....
T Consensus 172 ~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 172 Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3 23334456888999999999999888876543
No 53
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.77 E-value=0.0038 Score=50.37 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=64.6
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.||.++...|++++|...++.....- ......++...++|...|++.+|...++++..+... ++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~------------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~-- 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP------------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DP-- 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH------------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH--
Confidence 37889999999999988776654321 223334455678899999999999999999876321 22
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.....-|.++...++|.+|...|-.+.+
T Consensus 66 --~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 66 --KAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 2344458889999999999999988764
No 54
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.77 E-value=0.026 Score=45.29 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=72.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..++..|+|++|...+..+...-+. -...+.....++...|++.+|...++++...... +|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~ 89 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHY------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EP 89 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 346899999999999999999988776321 1334445567888999999999999998776321 22
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
. .....|.++...|+|.+|...|..+...
T Consensus 90 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 90 R----FPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2334588899999999999999887654
No 55
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.69 E-value=0.017 Score=44.69 Aligned_cols=93 Identities=8% Similarity=-0.011 Sum_probs=70.8
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|...++.....-++ ..+.+.....++...|++.+|...++++.... |.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~ 83 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PK 83 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence 46888999999999999999988876321 24455566678889999999999999988763 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. ......-|.++...|+|.+|...|-.+..
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 84 D-IAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12334458888899999999998887754
No 56
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.65 E-value=0.029 Score=47.02 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=75.4
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC--
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-- 144 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~-- 144 (358)
...+|.++...|++++|.+.+.......+. ....+.....++...|++.+|...+.++......-.
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 107 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRDKH------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHH
Confidence 356899999999999999999988776321 234556667888899999999999999877533211
Q ss_pred ---------ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhh
Q 018294 145 ---------HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 145 ---------~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~ 181 (358)
.|. .......-|.++...++|.+|...|-.+....+
T Consensus 108 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 108 DYKILGLQFKLF-ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp ECGGGTBCCEEE-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhccccCcc-chHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 111 123444568889999999999999988876443
No 57
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.023 Score=44.29 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=74.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+.+.+....... ......++......+...|++.+|...++++...... ++
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~- 99 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDAT---------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DV- 99 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccc---------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CH-
Confidence 46899999999999999999998776421 1234667777788899999999999999998765221 12
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...++|.+|...|..+...
T Consensus 100 ---~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 100 ---KALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 23344588889999999999999887653
No 58
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.58 E-value=0.024 Score=45.74 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=76.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCC---C-Ccch--hhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQRED---G-TDDQ--KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~---~-~~~~--~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
...|..++..|+|++|...+......+.... . .++. ........++......|..+|++.+|...++++..+
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-- 92 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR-- 92 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--
Confidence 4689999999999999998888777642110 0 0000 002445677888888999999999999999998876
Q ss_pred cCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 142 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 142 ~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
+|.. .......|.++...|+|.+|...|..+...
T Consensus 93 ---~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 ---EETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ---STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 2221 223344588999999999999999887653
No 59
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.58 E-value=0.014 Score=42.89 Aligned_cols=96 Identities=6% Similarity=-0.021 Sum_probs=72.0
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|...+......... ....+.....++...|++.+|...++++........+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-- 75 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-- 75 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch--
Confidence 56899999999999999999988876421 1234556677888999999999999998775322001
Q ss_pred hhHHHhhhhhhhHhhh-hcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAE-RQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~-~~y~~A~~~f~e~~~~ 179 (358)
.......|.++... ++|.+|...|..+...
T Consensus 76 --~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 --KDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp --HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 22344458888899 9999999988887654
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.03 Score=41.37 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=70.8
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+.+.......+. ....+.....++...|++.+|...+.++...... ++
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~- 72 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WG- 72 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cH-
Confidence 46889999999999999999998876421 1345556667888999999999999988765211 12
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...++|.+|...|-.+...
T Consensus 73 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 ---KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 23344477888899999999988887653
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.49 E-value=0.064 Score=46.52 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=74.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
+.+|..++..|++++|.+.+.+....-+.. .+.+.....++...|++.+|...+.++.... .+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~ 71 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNS------------PYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATK 71 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCC------------STTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---Cchh
Confidence 568999999999999999999988764321 1133444567889999999999999987622 3455
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
..+......|.++...++|.+|...|-.+...
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445566689999999999999999988753
No 62
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.48 E-value=0.016 Score=44.10 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=71.6
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+.+......... ..+++.....++...|++.+|..+++++...... ++
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~- 84 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPK------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FI- 84 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTT------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ch-
Confidence 46899999999999999999988765321 1345566677888999999999999998765211 12
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...++|.+|...|-++...
T Consensus 85 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 85 ---KGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 23344588889999999999998887653
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.43 E-value=0.12 Score=45.03 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=77.1
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH--------hcCHHHHHHHHHHH
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE--------TKNNKKLKQLYQKA 136 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--------~~d~~~a~~~l~~a 136 (358)
.....+|..++..|+|++|.+.++.+....++. ....+.+......+.. .|++.+|...++++
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQID---------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC---------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 345679999999999999999999998875432 2234556666777888 99999999999988
Q ss_pred HhhhccCCC-hhhhHHH----------hhhhhhhHhhhhcHHHHHHHHHHHhhhhh
Q 018294 137 LAIKSAIPH-PRIMGII----------RECGGKMHMAERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 137 ~~~~~~~~~-~~~~~~i----------~~~~g~~~~~~~~y~~A~~~f~e~~~~~~ 181 (358)
......... +.....+ ...-|.++...|+|.+|...|-.+...++
T Consensus 124 l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 124 IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 765322111 1111111 13458889999999999999988876554
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.38 E-value=0.047 Score=46.44 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=73.8
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|..+...|++++|.+.+......-+ .....+.....++...|++.+|...++++...... ++..
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 112 (228)
T 4i17_A 47 NCGVCADNIKKYKEAADYFDIAIKKNY------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG--NATI 112 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTC------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHH
T ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHH
Confidence 489999999999999999988876521 24556677778899999999999999998765321 2322
Q ss_pred ---hHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 149 ---MGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 149 ---~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.+......|.++...++|.+|...|-.+.+
T Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 113 EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 223455668899999999999999988865
No 65
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.37 E-value=0.055 Score=52.00 Aligned_cols=100 Identities=9% Similarity=-0.024 Sum_probs=75.9
Q ss_pred hhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC---CChhhhHHH
Q 018294 76 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI---PHPRIMGII 152 (358)
Q Consensus 76 ~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~---~~~~~~~~i 152 (358)
..|+|++|.+++++........-|.+. ...+..+-....+|..+|++.+|..++.++..+...+ .+|.+-..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~H----p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSN----VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhc----hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 468999999999887775544334332 5577888888899999999999999999998865543 356654433
Q ss_pred hhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 153 RECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 153 ~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. --|.++..+|+|.+|...|-.+++.+
T Consensus 386 ~-nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 386 L-KLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 3 33888999999999999888886544
No 66
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.19 Score=42.75 Aligned_cols=96 Identities=13% Similarity=0.029 Sum_probs=67.4
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.+.+.....+. ...++.....++...|++.+|...++++...... ++
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~ 207 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FV 207 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HH
Confidence 346888888888999998888888776421 1244555667788888999988888887664211 11
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
......|.++...++|.+|...|-.+....
T Consensus 208 ----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 208 ----RAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 233344777888888888888888776544
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.36 E-value=0.034 Score=48.60 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=77.5
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
.+.+|..++..|+|++|.+.+..+....+.. ....+.+.....++...|++.+|...++++.+.... +|
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~ 86 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTH---------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DP 86 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--Cc
Confidence 3568999999999999999999998775321 334667777788899999999999999998765321 12
Q ss_pred hhhHHHhhhhhhhHhh--------hhcHHHHHHHHHHHhhhhh
Q 018294 147 RIMGIIRECGGKMHMA--------ERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~--------~~~y~~A~~~f~e~~~~~~ 181 (358)
. ........|..+.. .++|.+|...|-.+...++
T Consensus 87 ~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 87 R-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp T-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred h-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 2 12233445777887 9999999999999876654
No 68
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.32 E-value=0.042 Score=41.35 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=72.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|.+.+.......+. ....+.....++...|++.+|...+.++..... .++
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~ 80 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYS 80 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCH
Confidence 346899999999999999999988876421 134555667788899999999999999876521 112
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...++|.+|...|-.+...
T Consensus 81 ----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 81 ----KAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 23345588889999999999999887654
No 69
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.30 E-value=0.038 Score=43.87 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=71.7
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|++++|.+.+......... ...++.....++...|++.+|...+.++...... ++
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~- 81 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPS------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YI- 81 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cH-
Confidence 46899999999999999999988876321 1345556677888999999999999998775321 12
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...++|.+|...|-.+...
T Consensus 82 ---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 82 ---KGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23344588888999999999998887653
No 70
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.23 E-value=0.038 Score=46.14 Aligned_cols=107 Identities=16% Similarity=0.013 Sum_probs=76.9
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCc----chhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD----DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 142 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~ 142 (358)
...+|..++..|+|++|.+.+.+............ +.........++.....++...|++.+|...++++....
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 34689999999999999999999988764321000 000012234677778888999999999999999988762
Q ss_pred CCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 143 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 143 ~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
|. ........|.++...++|.+|...|-.+...
T Consensus 119 ---p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 ---KN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp ---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 21 1223344588899999999999998887653
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.16 E-value=0.24 Score=45.37 Aligned_cols=113 Identities=9% Similarity=-0.087 Sum_probs=83.3
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+..-+|.++...|++++|...+.+....... .+ .......+.....++...|++..|...+.++........
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~----~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPP----GW---FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT----TC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----Cc---hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 44456788899999999999999988776532 11 123444555666778889999999999999987765555
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhc
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 184 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~ 184 (358)
++..........|.++...|+|.+|...|-++...+...+
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 127 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 5544444445568889999999999999999876655443
No 72
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.06 E-value=0.095 Score=50.26 Aligned_cols=104 Identities=10% Similarity=0.010 Sum_probs=78.5
Q ss_pred HhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC---CChhhhH
Q 018294 74 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI---PHPRIMG 150 (358)
Q Consensus 74 ~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~---~~~~~~~ 150 (358)
+...|+|++|.++.+.........-|.. -...+..+-..+.+|..+|++.+|..++.++..+...+ .+|.+-.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~----h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDI----NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTT----SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCcc----chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4467899999999988877654443432 25678888888899999999999999999998765443 3566543
Q ss_pred HHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhh
Q 018294 151 IIRECGGKMHMAERQWADAATDFFEAFKNYDE 182 (358)
Q Consensus 151 ~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~ 182 (358)
.+. --|.++..+|+|.+|...|-++++.+..
T Consensus 373 ~l~-nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 373 QVM-KVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 333 3388899999999999999888765543
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.01 E-value=0.072 Score=45.03 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=69.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHH----------------HHHHHHHhcCHHHHHH
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI----------------EIQMYTETKNNKKLKQ 131 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~----------------~~~~~~~~~d~~~a~~ 131 (358)
+..|..+...|++++|...+......-++ -.+.+.. ...++...|++.+|..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 45788888999999999999988776321 1222333 6678889999999999
Q ss_pred HHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 132 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 132 ~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.++++.... |.- .......|.++...|+|.+|...|-.+..
T Consensus 76 ~~~~al~~~-----p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 76 FYKELLQKA-----PNN-VDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988763 221 12333448889999999999999988865
No 74
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.01 E-value=0.089 Score=39.06 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=69.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+.+.+....... + ...+.....++...|++.+|..++.++..... .++.
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 78 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE 78 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHH
Confidence 46888999999999999999998876321 1 23455666788899999999999998876421 1222
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.....|.++...++|.+|...|-++..
T Consensus 79 ----~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 79 ----AWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 233447788889999999998888764
No 75
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.00 E-value=0.062 Score=43.87 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=70.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|+|++|.+.+++....-++ ..+.+.....++...|++.+|...+..+...... ++
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~- 73 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKADPN------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SA- 73 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hH-
Confidence 46999999999999999999998876321 2455666678899999999999999987654221 12
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
......|..+...++|..|...|..+..
T Consensus 74 ---~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 74 ---EAYYILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333447778888999999988888754
No 76
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0086 Score=44.45 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=44.9
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 140 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~ 140 (358)
..+|..+...|+|++|.+.+.......+. ....+.....++...|++.+|...++++....
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQ------------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45788888889999998888888776321 12345556677788888998888888877653
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.92 E-value=0.51 Score=40.02 Aligned_cols=106 Identities=6% Similarity=0.034 Sum_probs=67.9
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHH------------------HhcCHHH
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT------------------ETKNNKK 128 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------------------~~~d~~~ 128 (358)
...+|..++..|+|++|.+.++.+...-++.. .....+......+. ..|++.+
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------THHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence 45689999999999999999999988754321 11111222222222 3578999
Q ss_pred HHHHHHHHHhhhccCCC-hhhhHH----------HhhhhhhhHhhhhcHHHHHHHHHHHhhhhh
Q 018294 129 LKQLYQKALAIKSAIPH-PRIMGI----------IRECGGKMHMAERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 129 a~~~l~~a~~~~~~~~~-~~~~~~----------i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~ 181 (358)
|...++++.+....... +..... .....|.++...++|.+|...|-.+.+.++
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 99998887653211111 111111 113457888899999999999988877654
No 78
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.91 E-value=0.2 Score=48.89 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=79.7
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~- 143 (358)
.....||.+|...|+|++|..+.++...-.....|.+. ......+.....+|..+|++.+|..++.+|..+....
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44458999999999999999988876654333233322 4466666777889999999999999999998866543
Q ss_pred --CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHh
Q 018294 144 --PHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 177 (358)
Q Consensus 144 --~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~ 177 (358)
.||.+.. +....+..++..+.|.+|...|..+-
T Consensus 428 G~~Hp~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 428 GPSHPITKD-LEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp CTTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566543 33455667778888999888887764
No 79
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.054 Score=46.26 Aligned_cols=98 Identities=4% Similarity=-0.002 Sum_probs=75.4
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC-Ch
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP 146 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~-~~ 146 (358)
..+|..+...|++++|.+.+....... . + ...+......+...|++.+|...+.++........ +.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-----~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH-K-----D-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-C-----C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh-c-----c-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 468999999999999999999988774 1 1 23455667788899999999999999887654332 22
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
..........|.++...++|.+|...|-.+..
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 22244555668889999999999999988765
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.87 E-value=0.13 Score=43.51 Aligned_cols=96 Identities=10% Similarity=-0.045 Sum_probs=72.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+.......+.+ + . ..+.....++...|++.+|...+.++.... |.
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~----~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~ 74 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQ----D----S---VTAYNCGVCADNIKKYKEAADYFDIAIKKN-----YN 74 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTC----C----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCC----C----c---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----cc
Confidence 458999999999999999999988775311 1 1 233445678889999999999999987652 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
........|.++...++|.+|...|-++....
T Consensus 75 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 75 -LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 22334455888999999999999999887644
No 81
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.85 E-value=0.08 Score=45.08 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=72.0
Q ss_pred hhhHHHHhhh-----------chHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 018294 68 LKLCKIWFDM-----------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 136 (358)
Q Consensus 68 ~~la~~~~~~-----------g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a 136 (358)
..+|.++... |++++|...+......-++ ..+.+.....++...|++.+|...++++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------------YAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4688889888 9999999999988877321 2344556677888999999999999999
Q ss_pred HhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 137 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.... .+|.. ....|.++...|+|.+|...|-.+..
T Consensus 145 l~~~---~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 145 LALE---DTPEI----RSALAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp HHHC---CCHHH----HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Hhcc---cchHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8765 34433 33448888999999999998888765
No 82
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.82 E-value=0.087 Score=42.96 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=52.0
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++...++++.|.+.+.......+. ..+.+.....++...|++.+|...++++.... |.
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-----p~- 139 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTV------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-----PG- 139 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-----ch-
Confidence 4566666666666666666665554321 12233344556666777777777777665542 11
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.......-|.++...|+|.+|...|-.+.+
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112223346666677777777777666653
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.75 E-value=0.11 Score=38.91 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=59.9
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++...|++++|.+.+.+....... + ...+.....++...|++.+|..++..+..... .++.
T Consensus 40 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~- 104 (136)
T 2fo7_A 40 NLGNAYYKQGDYDEAIEYYQKALELDPR-----S-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAE- 104 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCC-----c-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChH-
Confidence 4777888888888888888877665321 1 22344456677788888888888887765421 1121
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.....|.++...+++.+|...|-++..
T Consensus 105 ---~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 105 ---AWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 222336677778888888877776653
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.74 E-value=0.12 Score=38.81 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=67.8
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+++.+....... + ...+......+...|++.+|..++.++..... .++.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 70 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-----S-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAE 70 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-----c-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchH
Confidence 45788999999999999999988766321 1 23444556778889999999999998876421 1122
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.....|.++...++|.+|...|-++..
T Consensus 71 ----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 71 ----AWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp ----HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 233447788889999999988877654
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.71 E-value=1.1 Score=42.91 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=73.9
Q ss_pred HhhhhhHHHHhhhchH-hHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC
Q 018294 65 KTNLKLCKIWFDMGEY-GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~ 143 (358)
.....+|..+...|+| ++|.+.+++....-+. ..+.+.....+|...|++.+|...+.++....
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 167 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--- 167 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3445799999999999 9999999998877321 24556677788999999999999999998753
Q ss_pred CChhhhHHHhhhhhhhHhhh---------hcHHHHHHHHHHHhhh
Q 018294 144 PHPRIMGIIRECGGKMHMAE---------RQWADAATDFFEAFKN 179 (358)
Q Consensus 144 ~~~~~~~~i~~~~g~~~~~~---------~~y~~A~~~f~e~~~~ 179 (358)
|. .......|.++... ++|.+|...|-++...
T Consensus 168 --p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 168 --KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp --CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 33 13344447777777 9999999999888753
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.69 E-value=0.13 Score=43.80 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=70.7
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.++.+...-+.. ....+.+......+...|++.+|...++++.+.... ++.
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~--~~~ 76 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFG---------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--HPN 76 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CCc
Confidence 468889999999999999999998874321 223455566678889999999999999988764322 122
Q ss_pred hhHHHhhhhhhhHh------------------hhhcHHHHHHHHHHHhhhhhh
Q 018294 148 IMGIIRECGGKMHM------------------AERQWADAATDFFEAFKNYDE 182 (358)
Q Consensus 148 ~~~~i~~~~g~~~~------------------~~~~y~~A~~~f~e~~~~~~~ 182 (358)
.. ......|..+. ..+++.+|...|-.....++.
T Consensus 77 ~~-~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 77 ID-YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HH-HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HH-HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 11 11122244333 357888898888887766543
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.67 E-value=0.26 Score=43.58 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=74.5
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.+...........+... ......++.....++...|++.+|..+++++...... ++
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~ 270 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NA 270 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--ch
Confidence 347899999999999999999988876543211110 1223456666778889999999999999998775321 12
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
......|.++...++|.+|...|-.+..
T Consensus 271 ----~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 271 ----STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 2334448888899999999998888764
No 88
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.67 E-value=0.083 Score=49.46 Aligned_cols=106 Identities=11% Similarity=0.030 Sum_probs=76.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCC--CCcc--hhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQRED--GTDD--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 143 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~--~~~~--~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~ 143 (358)
..+|..++..|+|++|.+.+........... ...+ .........++.....+|..+|++.+|..+++++...
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---- 302 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---- 302 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----
Confidence 4689999999999999999888877432100 0000 0012456778888889999999999999999998865
Q ss_pred CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 144 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 144 ~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
+|. ........|.++...++|.+|..+|-.+.+.
T Consensus 303 -~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 -DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 222 1223344588889999999999998887653
No 89
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.65 E-value=0.14 Score=45.94 Aligned_cols=98 Identities=8% Similarity=0.103 Sum_probs=75.8
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
+.+|..+...|++++|.+.+.......+. + .......+.....++...|++.+|...++++..... .++
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~- 306 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPS-----V---AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP--DNV- 306 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----S---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----c---hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccH-
Confidence 35688999999999999999999887532 1 244556677778889999999999999999876521 122
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...|+|.+|...|-.+.+.
T Consensus 307 ---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 307 ---NALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23444588889999999999999888754
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.65 E-value=0.13 Score=41.08 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=40.4
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++...|++++|.+.+.......+. ...++.....++...|++.+|..++.++...... ++
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 110 (186)
T 3as5_A 47 HLGIAYVKTGAVDRGTELLERSLADAPD------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI--NF-- 110 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--hH--
Confidence 3555555555555555555555444210 0122333344455555555555555555433110 11
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHH
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEA 176 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~ 176 (358)
......|.++...++|.+|...|-++
T Consensus 111 --~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 111 --NVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 12222344445555555555555444
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.59 E-value=0.13 Score=41.16 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=69.7
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|.+.+.+.....+ .....+......+...|++.+|..++.++..... .++
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~ 76 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA------------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNV 76 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc------------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCH
Confidence 34688899999999999998877654421 1134555667788899999999999998876521 112
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
......|.++...++|.+|...|..+....
T Consensus 77 ----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 77 ----KVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 233445778888999999999998876654
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.51 E-value=0.15 Score=43.08 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=50.3
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
+...+|.++...|++++|...+......-++ -.+.+.....++...|++.+|...++++...
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPN------------NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3345999999999999999999998877421 2355566678889999999999999998876
No 93
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=95.51 E-value=0.041 Score=48.02 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=72.4
Q ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhC-CCh
Q 018294 219 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPE 297 (358)
Q Consensus 219 ~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~-l~~ 297 (358)
.+|.+..+..|-+...+++|..|-+.++. ++.+...+..|.+.+|......+...|++|+++.+++.|| +++
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~ 167 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSD 167 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCH
Confidence 46788888999999999999988776543 3444455566888899888888889999999999999995 899
Q ss_pred HHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 298 KDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 298 ~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
++++.++.+- | =++| .+|.|.+
T Consensus 168 ~el~~fi~~~---G---W~vd-~~g~I~~ 189 (226)
T 1rz4_A 168 SQLKVWMSKY---G---WSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHH---T---CEEC-C--CEEC
T ss_pred HHHHHHHHHC---C---CEEC-CCccEEe
Confidence 9999998872 2 2454 5566655
No 94
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.50 E-value=0.74 Score=42.90 Aligned_cols=97 Identities=8% Similarity=0.087 Sum_probs=74.8
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|..+...|++++|.+.+.......+. + .....+.+.....++...|++.+|...++++..... .++
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~-- 329 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTEPS-----I---AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNV-- 329 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCS-----S---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-----c---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccH--
Confidence 4599999999999999999998876432 1 244567777888899999999999999999876521 112
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.....-|.++...++|.+|...|-.+.+.
T Consensus 330 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 330 --NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 23344578888999999999999888753
No 95
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.50 E-value=0.29 Score=40.49 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=69.8
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|.+.+.......+. ....+.....++...|++.+|..++.++...... ++
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~ 76 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPK------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD--SA 76 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--Ch
Confidence 356889999999999999999988876431 1334556667888899999999999988765211 12
Q ss_pred hhhHHHhhhhhhhHhhh-hcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAE-RQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~-~~y~~A~~~f~e~~~ 178 (358)
......|.++... ++|.+|...|-.+..
T Consensus 77 ----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 77 ----EINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ----HHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 2333447788888 999999998888776
No 96
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.47 E-value=0.067 Score=47.78 Aligned_cols=95 Identities=9% Similarity=0.054 Sum_probs=72.7
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+......-.. ...++.....++...|++.+|...++++... +|.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~ 70 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQ 70 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence 46899999999999999999988877321 2345566778888999999999999988754 222
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. .......|.++...++|.+|...|..+....
T Consensus 71 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 71 S-VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 1233345888999999999999998887543
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.46 E-value=0.67 Score=43.19 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=73.9
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhh------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ------LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~------~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
..+|.++...|++++|.+.+.+.....+.. .. ... .++........+...|++.+|..++.++.....
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDH----KR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCh----HH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 468999999999999999999988664321 10 010 111223446778899999999999999877532
Q ss_pred cCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 142 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 142 ~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. +|........+.|.++...++|.+|...|-++..
T Consensus 289 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 289 S--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp S--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred c--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 4444445566678889999999999988887654
No 98
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.45 E-value=0.092 Score=42.65 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=70.0
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhhhccCC
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNN--KKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~d~--~~a~~~l~~a~~~~~~~~ 144 (358)
..+|.++...|++++|...+.......+. + ..++.....+ +...|++ .+|...+.++......
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-- 113 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQLRGE-----N-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN-- 113 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----C-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--
Confidence 46899999999999999999998877432 1 2334444555 7788998 9999999988765211
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
++ ......|.++...++|.+|...|..+....
T Consensus 114 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 114 EI----TALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 12 233445888899999999999998887544
No 99
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.41 E-value=0.092 Score=44.69 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=70.2
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHH
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----------KNNKKLKQLYQKA 136 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----------~d~~~a~~~l~~a 136 (358)
..+|.++...|++++|...++.....-++ ..+.+.....++... |++.+|...++++
T Consensus 43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 43 YWLARTQLKLGLVNPALENGKTLVARTPR------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 45899999999999999999998877432 123344455667777 9999999999998
Q ss_pred HhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 137 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.... |.. ......-|.++...|+|.+|...|-.+.+.
T Consensus 111 l~~~-----P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 111 ERVN-----PRY-APLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-----ccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 8763 221 123344588899999999999999887653
No 100
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.41 E-value=0.22 Score=42.50 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=68.1
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
....+|..+...|++++|.+.+.+....... ....+.....++...|++.+|..++.++...... +
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~ 104 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------------SADAHAALAVVFQTEMEPKLADEEYRKALASDSR--N 104 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--c
Confidence 3456888888999999999998888776321 1345556667788899999999999888765211 1
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
+ ......|.++...++|.+|...|-++..
T Consensus 105 ~----~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 105 A----RVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred H----HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2 2333447777888999999988888765
No 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.38 E-value=0.17 Score=46.37 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=78.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcc---hhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 143 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~ 143 (358)
...+|..++..|+|++|...+..............+ .........++.....++...|++.+|...++++....
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--- 226 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--- 226 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 346899999999999999999998887643211100 00123346777888889999999999999999998763
Q ss_pred CChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 144 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 144 ~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
|. .......-|.++...++|.+|...|-.+..
T Consensus 227 --p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 227 --SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp --TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 112334458889999999999999988764
No 102
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.37 E-value=0.18 Score=39.79 Aligned_cols=94 Identities=6% Similarity=-0.014 Sum_probs=65.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.+.......+. ....+.....++...|++.+|..++.++...... ++
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~ 115 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELDKK------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DK 115 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CH
Confidence 346899999999999999999988876421 1345556677888999999999999998765321 22
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHH
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEA 176 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~ 176 (358)
... .....+..+...++|.+|...|-..
T Consensus 116 ~~~--~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 116 DAK--MKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHcccch
Confidence 221 1122244456678888887766554
No 103
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.37 E-value=0.12 Score=44.17 Aligned_cols=97 Identities=15% Similarity=0.027 Sum_probs=71.6
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.+.+....... ...++.....++...|++.+|..+++++.. .. .+|
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~-~~~ 138 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSR------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DT-LYP 138 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CT-TCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--Cc-cCc
Confidence 346899999999999999999998776321 134455667788899999999999998765 11 122
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
. ........|.++...++|.+|...|-++...
T Consensus 139 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 139 E-RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp T-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 1223344588888999999999999887653
No 104
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.34 E-value=0.29 Score=44.32 Aligned_cols=24 Identities=17% Similarity=0.208 Sum_probs=11.6
Q ss_pred hHHHHhhhchHhHHHHHHHHHHHh
Q 018294 70 LCKIWFDMGEYGRMSKILKELHKS 93 (358)
Q Consensus 70 la~~~~~~g~~~~a~~~l~~l~~~ 93 (358)
+|.++...|++++|.+.+.+....
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555555555544444433
No 105
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.34 E-value=0.12 Score=44.70 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=70.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|.+.+.......+. ....+.....++...|++.+|..++.++...... ++
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~ 111 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YN 111 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--cc
Confidence 346899999999999999999888876321 1334556667888899999999999998765321 12
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
......|.++...++|.+|...|-.+...
T Consensus 112 ----~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 112 ----YAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23334477888899999999988887653
No 106
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.27 E-value=0.11 Score=47.65 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=72.2
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh-
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP- 146 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~- 146 (358)
.-+|.++...|++++|.+++......-. ....++.++..+++++.+|+...|+..+.+.... +|
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~----------~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d 168 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDE----------AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IED 168 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSC----------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCC----------CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Ccc
Confidence 4689999999999999999987633311 0347888899999999999999999999876554 22
Q ss_pred ----hhhHHHhhhhhhhHhhhh--cHHHHHHHHHHHhhhhh
Q 018294 147 ----RIMGIIRECGGKMHMAER--QWADAATDFFEAFKNYD 181 (358)
Q Consensus 147 ----~~~~~i~~~~g~~~~~~~--~y~~A~~~f~e~~~~~~ 181 (358)
.-...+....|-+.+..| +|.+|...|-+....|+
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 112234445565566555 89999888777665553
No 107
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.27 E-value=0.38 Score=43.52 Aligned_cols=102 Identities=8% Similarity=-0.099 Sum_probs=72.2
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.+.......+. ....+.....++...|++.+|..++.++........+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPG------------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 347899999999999999999998776321 23455667788999999999999999998765433211
Q ss_pred h-----hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 R-----IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~-----~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. .....+..-|.++...|++.+|...+-.++..|
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 1 113344555778888888888887665544433
No 108
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.24 E-value=0.11 Score=46.25 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=69.8
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|.++...|++++|.+.+.......+.. ...+......+...|++.+|..++.++...... ++
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~- 193 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGC------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DP- 193 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CH-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcccc------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--Ch-
Confidence 478999999999999999999888775321 112333567788899999999999988765211 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
......|.++...++|.+|...|-++....
T Consensus 194 ---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 194 ---FVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 233445888888999999999998887654
No 109
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.22 E-value=0.14 Score=42.52 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=71.2
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhccCCC
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
...+|.++...|++++|.+.+......... ....+.....++... |++.+|..+++++.. .. .+
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~--~~ 109 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPD------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP--TY 109 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST--TC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc--CC
Confidence 346899999999999999999988876421 123445667788899 999999999998876 11 12
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
|. ........|.++...++|.+|...|-++...
T Consensus 110 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 110 PT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp SC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 21 1223345588888999999999998887653
No 110
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.21 E-value=0.25 Score=44.23 Aligned_cols=106 Identities=10% Similarity=0.061 Sum_probs=70.7
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcch---hhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ---KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
..+|.++...|++++|.+.+.......+.. .+. ......+.........+...|++.+|...+.++......
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 266 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-- 266 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Confidence 468888888888888888888877664321 000 000001112234466788899999999999988765322
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
++..........|.++...++|.+|...|-.+..
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444445568888999999999998888765
No 111
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.13 E-value=0.088 Score=54.00 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=63.2
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..||.++.+.|++++|.+.+++....-.+ ..+.+.....++..+|++.+|...|+++.++. |.
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~P~------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P~ 75 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEVFPE------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PT 75 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence 35888888888888888888887766321 23445555667778888888888888887653 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. ......-|.++...++|.+|...|-.+.+
T Consensus 76 ~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 76 F-ADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11223337777777888888877777653
No 112
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.13 E-value=0.42 Score=39.11 Aligned_cols=111 Identities=11% Similarity=-0.035 Sum_probs=76.7
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-hccC-CC
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI-KSAI-PH 145 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~-~~~~-~~ 145 (358)
..+|..++..|+|++|...++......+..+..............|......+..+|++..|...++++..+ +... .+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 468899999999999999999888876542111000001223347777788888999999999999999876 1111 12
Q ss_pred hhhhHHHh----hhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 146 PRIMGIIR----ECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 146 ~~~~~~i~----~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
|. ....+ .--|..+...++|.+|..+|-.+.+-
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 32 12222 34588889999999999999998653
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.06 E-value=0.092 Score=45.49 Aligned_cols=96 Identities=8% Similarity=0.070 Sum_probs=70.4
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|.++...|++++|.+.+...... .. + .......+.....++...|++.+|...++++...... ++
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~-----~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~- 108 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSK-VN-----A---TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RL- 108 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-SC-----T---TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT-
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-cC-----c---hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cH-
Confidence 45888999999999999999888773 21 1 1334555667778888999999999999998775321 11
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.....-|.++...++|.+|...|-.+..
T Consensus 109 ---~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 109 ---DMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 2334457788889999999988877654
No 114
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.97 E-value=0.52 Score=41.54 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=39.6
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++...|++++|.+.+.......+. ....+.....++...|++.+|...+.++...... ++.
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~- 241 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD------------DAQLWNKLGATLANGNRPQEALDAYNRALDINPG--YVR- 241 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH-
Confidence 3455555555555555555554443211 0122333344445555555555555554433110 111
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAF 177 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~ 177 (358)
....-|.++...++|.+|...|-.+.
T Consensus 242 ---~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 242 ---VMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11222444455555555555554443
No 115
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.96 E-value=0.14 Score=46.63 Aligned_cols=99 Identities=8% Similarity=0.016 Sum_probs=62.5
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|.++...|++++|.+.+.+.....+.. ....++.....++...|++.+|..++.++......
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-- 245 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM----------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-- 245 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSS----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc----------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Confidence 444578899999999999999998888774321 01234455667788889999999999988765211
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
++ ......|.++...++|.+|...|-.+...
T Consensus 246 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 246 DY----SLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12 23344577888889999999888887653
No 116
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.93 E-value=0.17 Score=42.71 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=49.0
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++...|++++|.+.+......... ....+.....++...|++.+|..++.++...... ++.
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~- 126 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSS------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--NGD- 126 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCc------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHH-
Confidence 4566666666666666666665554211 1233344455556666666666666665543211 111
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.....|.++...++|.+|...|-++...
T Consensus 127 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 127 ---LFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ---HHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2223355556666666666666665443
No 117
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.93 E-value=0.23 Score=41.88 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=49.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|...+.+.....+. ..+.+.....++...|++.+|...+.++...... +
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~- 90 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKE------------DAIPYINFANLLSSVNELERALAFYDKALELDSS--A- 90 (243)
T ss_dssp ----------------CCTTHHHHHTTCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--c-
Confidence 346777888888888888877777664321 1344455566777788888888888877654211 1
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.......|.++...++|.+|...|-.+...
T Consensus 91 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 120 (243)
T 2q7f_A 91 ---ATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120 (243)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 122333466777778888888777776543
No 118
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.82 E-value=0.14 Score=38.67 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=62.8
Q ss_pred hchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhh
Q 018294 77 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 156 (358)
Q Consensus 77 ~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~ 156 (358)
.|++++|.+.++....... ++ ......+.....++...|++.+|...+.++.... |.. .......
T Consensus 3 ~g~~~~A~~~~~~al~~~~-----~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~l 67 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL-----QG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNH-QALRVFY 67 (117)
T ss_dssp ----CCCHHHHHHHHSSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC-----CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-hHHHHHH
Confidence 5789999999988776521 11 3356677777888999999999999999987652 221 2233445
Q ss_pred hhhHhhhhcHHHHHHHHHHHhhh
Q 018294 157 GKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 157 g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
|.++...|+|.+|...|..+...
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88899999999999999888754
No 119
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.81 E-value=0.19 Score=45.84 Aligned_cols=95 Identities=11% Similarity=-0.028 Sum_probs=73.3
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
-+.+|..+...|++++|.+.++......+. ....+.....++...|++.+|...++++.... |
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p 130 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG------------DAEAWQFLGITQAENENEQAAIVALQRCLELQ-----P 130 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C
Confidence 347899999999999999999999877421 14456667788899999999999999987752 2
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.. .......|.++...++|.+|...|-.+...
T Consensus 131 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 131 NN-LKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 21 223344488888999999999999887653
No 120
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.80 E-value=0.16 Score=48.85 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=77.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcc---hhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
..+|..++..|+|++|...+.+............+ .........++......|..+|++.+|...++++....
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---- 347 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD---- 347 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Confidence 46899999999999999999988876543210000 00123346777788888999999999999999998763
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
|. ........|.++...++|.+|..+|-.+..
T Consensus 348 -p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 -SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 122334458889999999999999988865
No 121
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.76 E-value=0.11 Score=45.99 Aligned_cols=101 Identities=6% Similarity=-0.049 Sum_probs=73.0
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|.++...|++++|.+.+.+.....+. ....+.....++...|++.+|...+.++........++.
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPG------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 47899999999999999999998776421 123455667888999999999999999877654321111
Q ss_pred ------hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 ------IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ------~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.........|.++...+++.+|...|-.+...+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 123444556888888999999988776655443
No 122
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.76 E-value=0.14 Score=52.47 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=69.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..||.++.+.|++++|.+.+++....-. ...+.+.....++..+|++.+|...++++..+. |.
T Consensus 47 ~nLg~~l~~~g~~~eA~~~~~~Al~l~P------------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-----P~ 109 (723)
T 4gyw_A 47 SNLASVLQQQGKLQEALMHYKEAIRISP------------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-----PA 109 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence 4689999999999999999988877632 124556666778888999999999999987763 22
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. ......-|.++...|+|.+|...|-.+.+
T Consensus 110 ~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 110 F-ADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12223347888888999999988888754
No 123
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.66 E-value=0.1 Score=49.36 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=70.1
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh-
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR- 147 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~- 147 (358)
.||.++...|++++|.+.++..........+... ....+..+.....+|..+|++.+|..+++++..+......+.
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~---~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQA---EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC---TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc---chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 5899999999999999998876654332111100 122344555667789999999999999999987654433211
Q ss_pred -hhHHHhhhhh--hhHhhhhcHHHHHHHHHHHhh
Q 018294 148 -IMGIIRECGG--KMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 148 -~~~~i~~~~g--~~~~~~~~y~~A~~~f~e~~~ 178 (358)
..+.+....| .+.+..++|.+|..+|-.+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 0122222223 344556789999999988764
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.46 E-value=1.4 Score=40.21 Aligned_cols=97 Identities=7% Similarity=0.041 Sum_probs=69.8
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|..+...|+|++|...+......-+. ....+.....++..+|++.+|...++++..+...
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-- 262 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-- 262 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--
Confidence 34457999999999999999999998887321 2345566678889999999999999999876321
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHH-Hhhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFE-AFKN 179 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e-~~~~ 179 (358)
++. ....-|.++...+++.+|....+. .|..
T Consensus 263 ~~~----a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 263 NKA----AKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 233346777788899888654444 4443
No 125
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.45 E-value=0.19 Score=37.51 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=54.0
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.+++..|+|..|...++............ .....+++......+.++|++.+|..+++++.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-----~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-----SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-----cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4679999999999999999999887765432110 2335677777788999999999999999998765
No 126
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.45 E-value=0.17 Score=37.19 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=46.9
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 140 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~ 140 (358)
..+|..+...|++++|.+.++.....-+. ....+.....+|...|++.+|...++++....
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPD------------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46888999999999999999888876321 12345566678888999999999999887653
No 127
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.40 E-value=0.15 Score=44.04 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=75.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...++..+...|++++|.+.+..+...... + .......+......+...|++.+|...+.++...... ++
T Consensus 8 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~ 77 (275)
T 1xnf_A 8 SEVLAVPLQPTLQQEVILARMEQILASRAL-----T---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MP 77 (275)
T ss_dssp GGGSCCCCCCCHHHHHHHHHHHHHHTSSCC-----C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CH
T ss_pred CcceeeccCccchHHHHHHHHHHHHhcccc-----c---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cH
Confidence 445677778889999999999998876321 1 2446777788889999999999999999998765221 22
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
. .....|.++...++|.+|...|-.+...
T Consensus 78 ~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 78 E----VFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 2 3344588889999999999999887653
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.20 E-value=0.17 Score=42.12 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=68.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+.+.+.. .+ ....+......+...|++.+|...+.++.... |.
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~ 69 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DP-----------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-----KH 69 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc
Confidence 468999999999999999887662 11 12456667778889999999999999987753 21
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
. .......|.++...++|.+|...|-.+...
T Consensus 70 ~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 70 L-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred c-hHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 1 123334488889999999999988887653
No 129
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.17 E-value=0.14 Score=49.73 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=72.8
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..++..|+|++|.+.+++....-.. ....+......+..+|++.+|...++++... +|.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~ 72 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS------------NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKK 72 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence 46888999999999999999988877321 2455666778889999999999999998875 222
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
. ......-|.++...++|.+|...|-.+.+.
T Consensus 73 ~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 73 Y-IKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 223334488899999999999999988754
No 130
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.99 E-value=1.6 Score=39.76 Aligned_cols=127 Identities=12% Similarity=0.074 Sum_probs=80.5
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhcc
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK--NNKKLKQLYQKALAIKSA 142 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--d~~~a~~~l~~a~~~~~~ 142 (358)
.....++.+++..|+.+.|.+.+++++..-. |..+...-+-+.+.++.+.+..| ++..|-.+|+.... .
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~------d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~ 207 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIE------DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---T 207 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---h
Confidence 3345789999999999999999999977621 00011234456667776666666 89999888887532 2
Q ss_pred CCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhh-----cchhHHHHHHHHHHHHHhhCC
Q 018294 143 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-----GNQRRIQCLKYLVLANMLMES 204 (358)
Q Consensus 143 ~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~-----~~~~~~~~l~y~~l~~lL~~~ 204 (358)
.+++.....+. . .++..|+|.+|...+-.....+.+. +++...+++..++.+..+.+.
T Consensus 208 ~p~~~~~~lLl--n--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 208 FPTWKTQLGLL--N--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp SCSHHHHHHHH--H--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHHH--H--HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 33311111111 1 6889999999998887554444332 235567777776666665443
No 131
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.95 E-value=0.33 Score=44.59 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=48.5
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|..++..|++++|.+.+..+....++ + ...+.....++...|++.+|..+++.+.+.. |.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~-----~-------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~- 65 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-----N-------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PL- 65 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-
Confidence 4677777777777777777666655321 1 1223333445556666666666666554431 11
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAF 177 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~ 177 (358)
........|.++...|+|.+|...|-.+.
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11122233555555666666666555543
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.94 E-value=0.41 Score=36.80 Aligned_cols=78 Identities=6% Similarity=0.181 Sum_probs=57.0
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..|...|+|++|.+.+.......+... .+ .......+......+..+|++.+|...+.++... .++|.
T Consensus 46 ~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~ 117 (127)
T 4gcn_A 46 NNKAAVYFEEKKFAECVQFCEKAVEVGRETR--AD---YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPE 117 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHH
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--hh---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHH
Confidence 4689999999999999999988776643321 11 2345667777778889999999999999998764 23566
Q ss_pred hhHHHh
Q 018294 148 IMGIIR 153 (358)
Q Consensus 148 ~~~~i~ 153 (358)
+...+.
T Consensus 118 ~~~~l~ 123 (127)
T 4gcn_A 118 LVKKVK 123 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 133
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.68 E-value=0.35 Score=47.17 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=71.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..++..+...|++++|.++++++...... + ...+......|...|++.+|..+++++..... .++.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~ 476 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLFQG-----T-------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPL 476 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----C-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChH
Confidence 47899999999999999999998766321 1 22344556778889999999999999876522 1333
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.....|.++...|+|.+|...|-++.+..
T Consensus 477 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 477 ----LLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 34455888889999999999999986653
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.67 E-value=0.32 Score=47.74 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhh---hcHHHHHHHHHHHhh
Q 018294 114 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE---RQWADAATDFFEAFK 178 (358)
Q Consensus 114 ~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~---~~y~~A~~~f~e~~~ 178 (358)
.....++...|++.+|...++++...... ++ ......|.++... +++.+|...|-++.+
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPE--EP----YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 33344445555555555555554433110 11 1112224444455 555555555555543
No 135
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.52 E-value=0.51 Score=33.86 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=47.6
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE-VYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
+..|..+...|++++|.+.++.....-+. + .. .+.....++...|++.+|...+.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV-----G-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----T-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46788999999999999999988776321 1 23 5556677888999999999999998765
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.41 E-value=0.41 Score=43.10 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++.+.|+|++|.+++..+...- .+ .. .......+++..+++..|...++.+.+ .++|..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~------p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~ 169 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG------SE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFL 169 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT------CH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC------Cc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCccc
Confidence 47788999999999999987665421 11 12 334455688999999999999875432 235554
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
...+..+.|..+...|+|.+|..+|-.+..
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 456777889999999999999999988753
No 137
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.41 E-value=4 Score=36.19 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|.++...|++++|.+.+.. + . ..+.+....+++..+|++.+|...++++.... ++..
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-------~---~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~ 164 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-------G---D-------SLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDAT 164 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-------C---C-------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-------C---C-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcH
Confidence 4678888888888888888765 1 1 13455566677888888888888888877652 1211
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
...+...-..+....++|.+|...|-++...
T Consensus 165 -~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 165 -LTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp -HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 1111111112223457888888888777654
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.36 E-value=1.1 Score=33.52 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=50.8
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.++...|++++|.+.+..+....++. ....+.+.....++...|++.+|...++++...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988774321 223555666778888999999999999988654
No 139
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.57 Score=44.36 Aligned_cols=94 Identities=19% Similarity=0.131 Sum_probs=72.6
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
-..+|..++..|+|++|...+++.....+ + ...+......+...|++.+|...++++.... |
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p 70 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE------D-------PVFYSNLSACYVSVGDLKKVVEMSTKALELK-----P 70 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC------C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----S
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc------c-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----h
Confidence 35689999999999999999999988742 1 3455666788899999999999999987652 2
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.. ......-|.++...|+|.+|...|-.+...
T Consensus 71 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 71 DY-SKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 11 123334588889999999999999887643
No 140
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.27 E-value=0.38 Score=46.05 Aligned_cols=97 Identities=7% Similarity=0.076 Sum_probs=71.6
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
+...+|.++...|++++|.+.+.......+. + ...+.....++...|++.+|..++.++...... +
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~ 377 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-----N-------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--L 377 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Confidence 3457899999999999999999988876432 1 134455667888999999999999988765321 2
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
+. .....|.++...++|.+|...|-.+....
T Consensus 378 ~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 378 PE----VPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp TH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 22 23334888888999999999998876543
No 141
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.25 E-value=0.49 Score=46.07 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=71.2
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
.+|.++...|++++|.+++++......... .+ .......+......|...|++.+|..+++++..... .++
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~---p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~-- 550 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQ--SN---EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST--NDA-- 550 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--CCH--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccc--cc---hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCh--
Confidence 678888888888888888888776543210 01 122356777778889999999999999998876531 122
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.....-|.++...|+|.+|...|-++.+.
T Consensus 551 --~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 --NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 23344477888899999999998887653
No 142
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.23 E-value=0.44 Score=45.91 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=70.1
Q ss_pred hhhHHHHhhh---------chHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh--------cCHHHHH
Q 018294 68 LKLCKIWFDM---------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--------KNNKKLK 130 (358)
Q Consensus 68 ~~la~~~~~~---------g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--------~d~~~a~ 130 (358)
..+|.++... |++++|.+.+.+.....++ + ...+.....+|... |++.+|.
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----D-------GRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4688889898 9999999999998887432 1 23344455666667 8899999
Q ss_pred HHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 131 QLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 131 ~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
..++++....... .-.......-|.++...++|.+|...|-++..
T Consensus 242 ~~~~~al~~~p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 242 SAYAQAEKVDRKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHCGGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998762210 01233445558889999999999999988764
No 143
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.22 E-value=0.27 Score=45.11 Aligned_cols=105 Identities=11% Similarity=-0.092 Sum_probs=73.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCC-----CCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQRED-----GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 142 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~ 142 (358)
..+|..++..|+|++|...+........... +..+.........++.....++..+|++.+|...++++....
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-- 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 4689999999999999999988776643210 000000001122467777888999999999999999988752
Q ss_pred CCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 143 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 143 ~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
|. ........|.++...++|.+|..+|..+..
T Consensus 261 ---p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 ---EK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ---TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 122334458889999999999999888764
No 144
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.28 Score=46.62 Aligned_cols=96 Identities=9% Similarity=0.077 Sum_probs=67.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|...+.......+. + ...+.....++...|++.+|...++++...... ++
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 372 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPE-----N-------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--AP 372 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-----C-------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChh-----h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CH
Confidence 347888999999999999988888776432 1 124445566777888999998888887665221 22
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. .....|.++...++|.+|...|-.+....
T Consensus 373 ~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 373 E----VPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 2 23344777888888888888888876543
No 145
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.06 E-value=2.6 Score=39.68 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhh-cchhHHHHHH
Q 018294 115 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLK 193 (358)
Q Consensus 115 ~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~-~~~~~~~~l~ 193 (358)
..+.+|+..|++.+|...+....+......++...-.+......++...+|+..+...+..+-...+.. .+|.-...++
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 445668889999999989888777655555665556677777889999999999998888876554443 4554444443
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.90 E-value=2.2 Score=33.69 Aligned_cols=63 Identities=6% Similarity=0.023 Sum_probs=51.0
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
.+...+|..+...|+|++|...+......-+ .....+......+..+|++..|...+.++...
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3445789999999999999999988877632 12445667778899999999999999999876
No 147
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=92.61 E-value=0.71 Score=42.31 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=69.9
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
....+|.++...|++++|...+.......++ ...++.....++...|++.+|...++++...... +
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~ 270 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--F 270 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C
Confidence 3457899999999999999998887766321 1234455667888999999999999988764211 2
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
+. ....-|..+...|+|.+|...|-++...
T Consensus 271 ~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 271 PD----AYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HH----HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22 2333477788899999999999887654
No 148
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.53 E-value=0.7 Score=45.29 Aligned_cols=94 Identities=18% Similarity=0.043 Sum_probs=71.8
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|.+.+++....-.+ ..+.+.....++...|++.+|...++++...... ++
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~ 91 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPG------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--HP 91 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CH
Confidence 346899999999999999999988876321 2345566677888999999999999998875321 12
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
......|.++...++|.+|...|-++.+
T Consensus 92 ----~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 92 ----GIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333448888999999999999988764
No 149
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.40 E-value=0.68 Score=34.33 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=42.0
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
..+|.++...|++++|.+.+......-+. ....+.....++...|++.+|...+.++...
T Consensus 23 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 23 FTLGKTYAEHEQFDAALPHLRAALDFDPT------------YSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35788888888888888888877765321 1234445566777788888888888877654
No 150
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.28 E-value=0.98 Score=40.07 Aligned_cols=60 Identities=5% Similarity=0.013 Sum_probs=47.2
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 138 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~ 138 (358)
.+.+|..+...|++++|...++.....-++ ..+.+....+++...|++.+|...++++..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ------------NGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc------------chhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 356899999999999999999998877421 234556667888899999999988887643
No 151
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.19 E-value=1.6 Score=32.13 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcc
Q 018294 111 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 185 (358)
Q Consensus 111 e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~ 185 (358)
..+.....++...|++.+|...+.++.... |.. ......-|.++...++|.+|...|-.+.......++
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD-----PTY-SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 455566778889999999999999987652 221 123344588899999999999999888765544444
No 152
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=92.12 E-value=0.74 Score=43.98 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=73.9
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.....+|.++...|++++|.+.+.......+. ...++.....++...|++.+|...+.++......
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-- 342 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPE------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-- 342 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--
Confidence 33457999999999999999999998876431 1344566678888999999999999998775322
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
++ ......|.++...++|.+|...|-++...
T Consensus 343 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 343 NV----YPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp CS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12 23334578888999999999999887654
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.09 E-value=3.6 Score=39.18 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=67.3
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|..++..|+|++|...+......-.. ....+......|..+|++.+|...++++..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---- 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---- 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence 44567999999999999999999998877321 24455667788999999999999999998753
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHH
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFE 175 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e 175 (358)
|... ......|.++...+++.+|.+..+.
T Consensus 382 -P~~~-~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 382 -PQNK-AARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1223336667777888888776555
No 154
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.85 E-value=0.2 Score=35.81 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=37.3
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcc
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 313 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i 313 (358)
.|+++++....+++++||+.|++|+.-+...|..+...|.+
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 45667777889999999999999999999999999999987
No 155
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.76 E-value=1.8 Score=31.37 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhhhcc
Q 018294 111 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 185 (358)
Q Consensus 111 e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~~~~ 185 (358)
..+.....++...|++.+|...++++...... ++ ......|.++...++|.+|...|-.+.......++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD--YV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 44556677888999999999999998876322 11 23344588899999999999999888754433343
No 156
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.66 E-value=0.43 Score=33.87 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHHhccccc---ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeec
Q 018294 274 LLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 274 l~~~~~~y~---~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~ 319 (358)
|+.+++.-. .++..+||+.+|+|...|...|-+|..+|.|...-+.
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~ 67 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT 67 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSS
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC
Confidence 344554444 8999999999999999999999999999999775443
No 157
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.65 E-value=8 Score=35.46 Aligned_cols=227 Identities=13% Similarity=0.159 Sum_probs=113.4
Q ss_pred hhhhHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHhhhhhhH---HHhhhhhHHHHhhhchHhHHHHHHHHHHHhc
Q 018294 18 RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW---FKTNLKLCKIWFDMGEYGRMSKILKELHKSC 94 (358)
Q Consensus 18 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~---~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~ 94 (358)
.|++++.+.++=+.++.- + -+-.=+-.++.+....-.-..+-| +.+-..-|..+++.|++..|.++..-+.+..
T Consensus 9 ~~~~~~~i~rl~~~I~~G-~--y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy 85 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEG-Q--PEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTF 85 (336)
T ss_dssp -CHHHHHHHHHHHHHHHC-C--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCC-C--CccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 477888888888888751 1 100011112222211100000111 2333466777777788877766553333211
Q ss_pred ccC-CCCcchhhhhhHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhcc-----CCChhhhHHHhhhhhhhHhhhhcH
Q 018294 95 QRE-DGTDDQKKGSQLLEVYAIEIQMYTET--KNNKKLKQLYQKALAIKSA-----IPHPRIMGIIRECGGKMHMAERQW 166 (358)
Q Consensus 95 ~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~--~d~~~a~~~l~~a~~~~~~-----~~~~~~~~~i~~~~g~~~~~~~~y 166 (358)
... ..+++.. ..-++ .+.... .+..+ +.+++++.++... .-||.++..+ |.+++.+++|
T Consensus 86 ~~~~~~~~~~~-~~rL~-------~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~i----g~~~~~e~~~ 152 (336)
T 3lpz_A 86 RQAGQRVDGAS-RGKLL-------GCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVV----GTLYVEEGEF 152 (336)
T ss_dssp HHHTCCCCHHH-HHHHH-------HHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHH----HHHHHHTTCH
T ss_pred HHcCCCCCHHH-HHHHH-------HHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHH----HHHHHccCCH
Confidence 111 0112210 11111 121122 22333 4466777665543 2267766444 7888889999
Q ss_pred HHHHHHHHHHh----hhhhh-------hcch------hHHHHHHHHHHHHHhhCC-----------CCCC-c-----CC-
Q 018294 167 ADAATDFFEAF----KNYDE-------AGNQ------RRIQCLKYLVLANMLMES-----------EVNP-F-----DG- 211 (358)
Q Consensus 167 ~~A~~~f~e~~----~~~~~-------~~~~------~~~~~l~y~~l~~lL~~~-----------~~~~-~-----~~- 211 (358)
.+|..+|.-.- +.|.. ...+ -...+|.|+++..+-.-. ..+| + .+
T Consensus 153 ~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~ 232 (336)
T 3lpz_A 153 EAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQ 232 (336)
T ss_dssp HHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC-
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccC
Confidence 99999986311 11111 1111 123444444332210000 0011 1 11
Q ss_pred -cccccCCCCccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCCh-hHHH
Q 018294 212 -QEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDP-FIRN 260 (358)
Q Consensus 212 -~~~~~~~~~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~-~l~~ 260 (358)
...+.|...|.+.++.-|+.+...++...|..+.++|++.+..|| .+.+
T Consensus 233 ~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~ 283 (336)
T 3lpz_A 233 SAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDT 283 (336)
T ss_dssp -CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHH
T ss_pred CcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 112224346778888899999999999999999999999999887 5543
No 158
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.30 E-value=0.23 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcccee
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 316 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ak 316 (358)
.|+++++....+++++||+.|++|+.-|...|..+...|.|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45667777889999999999999999999999999999988543
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=91.21 E-value=0.89 Score=33.95 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=49.5
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.++...|+|++|.+.++.....-++ ..+++......+...|++.+|...+.++...
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPN------------HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456999999999999999999998877431 1345556677888999999999999998765
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.20 E-value=1.1 Score=33.02 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=53.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.++...|++++|...+........... .+ .......+.....++...|++.+|...+.++...
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--ED---YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccccc--hh---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34689999999999999999998887754321 11 1334667777888899999999999999998765
No 161
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.18 E-value=1.8 Score=31.79 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=47.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeec--cCCEEEEccCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ--VNRLLERGDRSKGMKKYTAIDKWNSQLRSLYQTVSNR 356 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~--~~g~v~~~~~~~~~~~~~~l~~w~~~i~~l~~~v~~~ 356 (358)
...++..+||+.+|++..-|-..|.+|...|.|...-|. ..+.+..+.. . .+.+..+...+..+...+.+.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~--g---~~~~~~~~~~~~~~~~~~~~~ 104 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEK--P---EKVLKEFKSSILGEIERIEKM 104 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECC--H---HHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCc--H---HHHHHHHHHHHHHHHHHHHHh
Confidence 356999999999999999999999999999999876654 2233333322 2 233333444455555555444
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.15 E-value=1.5 Score=32.53 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=48.7
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.++...|++++|.+.+......... ....+.....++...|++.+|..++.++...
T Consensus 53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 53 YSNRAACYTKLLEFQLALKDCEECIQLEPT------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 346899999999999999999988876321 1344556677888999999999999998765
No 163
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.99 E-value=0.47 Score=45.47 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=59.8
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~- 143 (358)
+....||..|...|+|++|..+.++...-.....|.+. ......+.....+|..+|++.+|..+|.+|..+....
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS----LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 44458999999999999999988877654433333322 4456666777889999999999999999998865443
Q ss_pred --CChhhh
Q 018294 144 --PHPRIM 149 (358)
Q Consensus 144 --~~~~~~ 149 (358)
.||.+.
T Consensus 417 G~~Hp~~~ 424 (433)
T 3qww_A 417 GKDHPYIS 424 (433)
T ss_dssp CTTCHHHH
T ss_pred CCCChHHH
Confidence 345543
No 164
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=90.99 E-value=4.2 Score=36.01 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=69.5
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|.+.++.+...-+ ++ ....+....+.++...|++.+|...++++.... ..++
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~ 200 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQDE-----DA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTL 200 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----Cc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcH
Confidence 45689999999999999999999988732 11 122222222344445688999999999887641 1123
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~ 180 (358)
. +....|.+++..|+|.+|...|-++....
T Consensus 201 ~----~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 201 L----LLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 33445888999999999999999988764
No 165
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=90.95 E-value=1.1 Score=31.16 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=40.4
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
..+|..+...|++++|.+.+.......+. ....+.....++...|++.+|...++++...
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPN------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45777778888888888888777665321 1233445556677778888888887777654
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.87 E-value=1.3 Score=32.69 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=48.8
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.++...|++++|.+.+.......+. ....+.....++...|++.+|..++.++...
T Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPA------------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhcCcc------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 356899999999999999999988876321 1334556667888999999999999998765
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.73 E-value=1.4 Score=36.19 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=50.5
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
.+...+|..+...|+|++|.+.+......-+. ....+.....++...|++.+|...+.++...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------------NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34457999999999999999999988876321 1345566678889999999999999998776
No 168
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=90.73 E-value=0.32 Score=44.49 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCCC-CcCCcccccCCCCccHHHHHHHHHHHH---------------hCCHHHHHHHHHHhh
Q 018294 186 QRRIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQ---------------RNEIIEFEKILKSNR 249 (358)
Q Consensus 186 ~~~~~~l~y~~l~~lL~~~~~~-~~~~~~~~~~~~~p~~~~l~~L~~af~---------------~~d~~~f~~~l~~~~ 249 (358)
++......|.+|..+.+. ++. .+.. .-.....+|.++.-..+..++. .++|..|..+...
T Consensus 113 ~ne~EF~aY~lL~~l~~~-~~~~~l~~-Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~-- 188 (316)
T 3t5v_A 113 PNEAEFRAYALLSKIRDP-QYDENIQR-LPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS-- 188 (316)
T ss_dssp TTHHHHHHHHHHHSTTCT-HHHHHHTT-SCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhccc-hHHHHHHh-CCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhc--
Confidence 455556667666665321 110 0000 0001123676665556666664 2789999987652
Q ss_pred hhhcCChhHHHHH-HHHHHHHHHHHHHHhcccc----cccchhhHHhHhCCC-hHHHHHHHH
Q 018294 250 KTIMDDPFIRNYI-EDLLKNVRTQVLLKLIKPY----TRIRIPFISKELNVP-EKDVEQLLV 305 (358)
Q Consensus 250 ~~l~~D~~l~~~~-~~L~~~i~~~~l~~~~~~y----~~I~l~~la~~l~l~-~~~vE~~l~ 305 (358)
...|++..++ +....++|..++..+.+.| ..++++++++.|+.+ +++++.++-
T Consensus 189 ---~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 189 ---PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp ---TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred ---cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 1245665544 3457889999999999988 489999999999994 788877763
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.64 E-value=4.1 Score=37.66 Aligned_cols=89 Identities=12% Similarity=-0.014 Sum_probs=61.6
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCC
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 144 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~ 144 (358)
.+...+|..++..|+|++|.+.+......-. .....+......|..+|++.+|...+.++......
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-- 339 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-- 339 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Confidence 4445799999999999999999998887532 12345566677888999999999999999876321
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHH
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAAT 171 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~ 171 (358)
++.+. ...+.++...+++.++.+
T Consensus 340 ~~~~~----~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 340 DKAIQ----AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHHHHHHHHHHH
Confidence 22222 222444455566666554
No 170
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.52 E-value=0.87 Score=34.91 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=49.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
..+|..+...|++++|.+.+......-+ ...+.+.....++..+|++.+|...++++.++
T Consensus 51 ~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 51 SNRAACLTKLMEFQRALDDCDTCIRLDS------------KFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhhccHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999988877621 12445666778889999999999999999876
No 171
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=90.47 E-value=0.31 Score=34.67 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=30.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
-.+++.+||+.||+|+.-|...|..|-..|.|.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 469999999999999999999999999999884
No 172
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=90.36 E-value=0.98 Score=42.30 Aligned_cols=93 Identities=5% Similarity=-0.058 Sum_probs=67.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhhccCCCh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN-NKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d-~~~a~~~l~~a~~~~~~~~~~ 146 (358)
..+|.++...|++++|.+.+..+...-.+ ....+.....++..+|+ +.+|...++++.... |
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-----P 163 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAA------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-----P 163 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCcc------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-----C
Confidence 35788888899999999999988876321 23445555667778885 999999999987753 2
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. ....+..-|.++...++|.+|...|-.+..
T Consensus 164 ~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 164 K-NYQVWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 122344457778888899888888877753
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.14 E-value=3.3 Score=35.63 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=59.4
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhccC
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAI 143 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~~~~~~ 143 (358)
..+|.++...|++++|.+.+...... + + ...+.....+|.. .+++.+|..++.++....
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~-----~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL--K-----E-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--T-----C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--C-----C-------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 46788888888888888888777662 1 1 1223344566777 888888888888876542
Q ss_pred CChhhhHHHhhhhhhhHhh----hhcHHHHHHHHHHHhh
Q 018294 144 PHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 178 (358)
Q Consensus 144 ~~~~~~~~i~~~~g~~~~~----~~~y~~A~~~f~e~~~ 178 (358)
++.. ...-|.++.. .++|.+|...|..+..
T Consensus 73 -~~~a----~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 -YSNG----CHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp -CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -CHHH----HHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 2222 2233666777 8888888888777653
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.04 E-value=1.9 Score=32.76 Aligned_cols=63 Identities=5% Similarity=-0.016 Sum_probs=49.8
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
.....+|..+...|++++|.+.+.......+. ....+.....++...|++.+|..++.++...
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGG------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34457899999999999999999888776321 1345556677888999999999999998765
No 175
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.68 E-value=2.4 Score=33.52 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=50.9
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
...+|.++...|+|++|...+......-.. ....+.....++...|++.+|...+.++.....
T Consensus 48 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 48 LSNRAAAYSASGQHEKAAEDAELATVVDPK------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 346899999999999999999988877321 245566677888999999999999999987653
No 176
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=89.42 E-value=3.8 Score=29.33 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhh
Q 018294 110 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 110 ~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~ 181 (358)
.+.+......+...|++.+|...+.++...... ++ .....-|.++...++|.+|...|-.+....+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NP----VGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 344556677888999999999999998775321 22 2334458889999999999999999876543
No 177
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.40 E-value=0.45 Score=34.21 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHhccccc---ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 274 LLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 274 l~~~~~~y~---~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
|+.+++... .++..+||+.||+|...|...|.+|-.+|.|.-. +...|.=.+..+
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~ 72 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC--
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEeCc
Confidence 344554444 8999999999999999999999999999998533 333344444433
No 178
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=89.25 E-value=1.7 Score=34.99 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=38.6
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 138 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~ 138 (358)
+.+|..+...|++++|...++.....-+ ...+.+.....++...|++.+|...++++..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P------------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ------------SRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH------------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 4577777888888888877766554421 1234455556677778888888777776543
No 179
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=89.08 E-value=1.5 Score=31.55 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=48.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
...+|.++...|++++|...+.......+. ..+.+.....++...|++.+|...+.++...
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356899999999999999999988876321 1344556667888999999999999988754
No 180
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=89.03 E-value=1.7 Score=33.58 Aligned_cols=62 Identities=10% Similarity=-0.058 Sum_probs=48.9
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
..+|.++...|++++|...+......-+. + .+.+.....++...|++.+|...++++.....
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALMDIN-----E-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998877432 1 22344556778899999999999999887643
No 181
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.99 E-value=1.4 Score=33.04 Aligned_cols=61 Identities=5% Similarity=-0.048 Sum_probs=49.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 140 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~ 140 (358)
..+|..+...|++++|.+.+......-+. ....+.....++...|++.+|...+.++....
T Consensus 42 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 42 SNRAAALAKLMSFPEAIADCNKAIEKDPN------------FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 46899999999999999999988876321 13455666778889999999999999987764
No 182
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=88.51 E-value=0.88 Score=42.62 Aligned_cols=93 Identities=4% Similarity=-0.039 Sum_probs=68.7
Q ss_pred hhhHHHHhhhch-HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 68 LKLCKIWFDMGE-YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 68 ~~la~~~~~~g~-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
..+|.++...|+ +++|...+......-.+ ...++.....++..+|++.+|...++++.... |
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-----P 197 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPK------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-----A 197 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----c
Confidence 368888999996 99999999998887421 23445555667788999999999999988763 3
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.- ...+..-|.++...|+|.+|..+|-.+..
T Consensus 198 ~~-~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 198 KN-YHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp TC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 21 12334447778888999999988888754
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.44 E-value=2.6 Score=28.95 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 109 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 109 ~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
....+......+...|++.+|...+.++...... ++ ......|.++...++|.+|...|-++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4556666778888999999999999998765211 12 23344588889999999999999887653
No 184
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.36 E-value=1.4 Score=41.92 Aligned_cols=81 Identities=7% Similarity=-0.170 Sum_probs=59.5
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccC-
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 143 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~- 143 (358)
++...||..|...|+|++|.++.++...-.....|... ......+.....+|..+|++.+|..+|.+|..+....
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H----p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH----PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 44458999999999999999988877654333223322 4456666677888999999999999999998865543
Q ss_pred --CChhhh
Q 018294 144 --PHPRIM 149 (358)
Q Consensus 144 --~~~~~~ 149 (358)
.||.+.
T Consensus 406 G~~Hp~~~ 413 (429)
T 3qwp_A 406 GREHSLIE 413 (429)
T ss_dssp CTTSHHHH
T ss_pred CCCChHHH
Confidence 356544
No 185
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.18 E-value=0.96 Score=35.83 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=48.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccce--eeeccCCEEEEccCCccchHHHHHHHHHH
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERGDRSKGMKKYTAIDKWNS 344 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a--kID~~~g~v~~~~~~~~~~~~~~l~~w~~ 344 (358)
.-.+.+.||+.+|+++.+|...|.+|+..|.|.= +.|..++.....+-.+ ++++|..+..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p---L~ekL~~~~~ 111 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP---LWGKLYEYIQ 111 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH---HHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH---HHHHHHHHHH
Confidence 4578999999999999999999999999999964 6677766767666654 5787777543
No 186
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=87.88 E-value=2.9 Score=30.24 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=47.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEccCCccchHHHHHHHHHHHHHHHHHH
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDRSKGMKKYTAIDKWNSQLRSLYQT 352 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~~~~~~~~~~~l~~w~~~i~~l~~~ 352 (358)
..+++.+||+.+|++..-+-..|.+|...|.|...-+..++ .+.+++. -.+.+..|...+..+...
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~-----g~~~~~~~~~~~~~~~~~ 97 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDF-----GMEEAKRFLSSLKAVIDG 97 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH-----HHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHH-----HHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999876643333 3333322 234555566666555544
No 187
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=87.84 E-value=3.9 Score=35.18 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=66.1
Q ss_pred hhhhHHHHhh----hchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Q 018294 67 NLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALA 138 (358)
Q Consensus 67 ~~~la~~~~~----~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~ 138 (358)
...+|.++.. .|++++|.+.+......- ..+.+.....+|.. .+|+.+|..++.++..
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 3468999999 999999999998876551 12333445567778 8999999999999876
Q ss_pred hhccCCChhhhHHHhhhhhhhHhh----hhcHHHHHHHHHHHhh
Q 018294 139 IKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 178 (358)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~g~~~~~----~~~y~~A~~~f~e~~~ 178 (358)
.. ++.. ...-|.++.. .+++.+|...|..+.+
T Consensus 107 ~~----~~~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 107 LK----YAEG----CASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp TT----CHHH----HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred cC----CccH----HHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 42 3322 2233677777 8999999999888764
No 188
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.47 E-value=0.79 Score=31.43 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
..++..+||+.+|+|...|.+.|..|...|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4699999999999999999999999999999754
No 189
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=87.41 E-value=4.7 Score=32.04 Aligned_cols=66 Identities=8% Similarity=-0.055 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 107 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 107 ~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
....+.+......+...|++.+|...++++.... |. ....+..-|.++...++|.+|...|-.+..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----FY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4456677777888999999999999999987752 22 122444458889999999999999888764
No 190
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.39 E-value=1.6 Score=34.39 Aligned_cols=62 Identities=10% Similarity=-0.112 Sum_probs=49.0
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
..+|..+...|++++|.+.+......-++ + ...+.....++...|++.+|...++++.....
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIX-----E-------PRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46899999999999999999998877432 1 23344556788899999999999999887643
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.38 E-value=1.1 Score=43.27 Aligned_cols=89 Identities=7% Similarity=-0.048 Sum_probs=60.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|..+...|++++|.+.+++....-.. ....+.....+|..+|++.+|...++++.+..... +.
T Consensus 44 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~ 109 (477)
T 1wao_1 44 GNRSLAYLRTECYGYALGDATRAIELDKK------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD--KD 109 (477)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--TT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Confidence 46899999999999999999988776321 13445566778899999999999999998763221 22
Q ss_pred hhHHHhhhhhhh--HhhhhcHHHHHHHHH
Q 018294 148 IMGIIRECGGKM--HMAERQWADAATDFF 174 (358)
Q Consensus 148 ~~~~i~~~~g~~--~~~~~~y~~A~~~f~ 174 (358)
.. ...|.. +...++|.+|...+-
T Consensus 110 ~~----~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 110 AK----MKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HH----HHHHHHHHHHHHHHHCCC-----
T ss_pred HH----HHHHHHHHHHHHHHHHHHhcccc
Confidence 11 112333 667789999888776
No 192
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=87.27 E-value=2 Score=32.41 Aligned_cols=63 Identities=8% Similarity=-0.052 Sum_probs=50.1
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
...+|.++...|++++|...+.......+. ....+.....++...|++.+|...+.++.....
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 46 YTNRALCYLKMQQPEQALADCRRALELDGQ------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCch------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 346899999999999999999988876321 234556667788899999999999999877543
No 193
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=87.22 E-value=0.69 Score=37.21 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=58.0
Q ss_pred HHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHH
Q 018294 73 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 152 (358)
Q Consensus 73 ~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i 152 (358)
-+...|++++|.+.+......-+. ..+.+.....+|...|++.+|..++.++...... ++. .
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~----~ 80 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQ------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAE----L 80 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCS------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHH----H
T ss_pred hhhhccCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH----H
Confidence 356778999999999887776321 1345566678889999999999999998876422 222 2
Q ss_pred hhhhhhh-HhhhhcH--HHHHHHHHHHhh
Q 018294 153 RECGGKM-HMAERQW--ADAATDFFEAFK 178 (358)
Q Consensus 153 ~~~~g~~-~~~~~~y--~~A~~~f~e~~~ 178 (358)
....|.+ +...++| .+|...|-.+..
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~ 109 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALA 109 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 2333555 6678888 888888877654
No 194
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.13 E-value=2.5 Score=30.64 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=47.2
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
..+|.++...|++++|...+.+....... + ...+.....++...|++.+|..++.++...
T Consensus 47 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 47 YNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 46899999999999999999988776321 1 234455667888999999999999988765
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=87.11 E-value=0.66 Score=42.47 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=49.1
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
+...+|..+...|+|++|...+......-.. ....+......|..+|++.+|...+.++...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK------------NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4457999999999999999999988876321 2345566678889999999999999988654
No 196
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.91 E-value=0.99 Score=45.66 Aligned_cols=93 Identities=8% Similarity=0.028 Sum_probs=66.8
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|..+...|++++|.+.++.....-.+ ..+.+.....++...|++.+|...++++.+....- +
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~ 501 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERVGW------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--L 501 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--S
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--h
Confidence 346889999999999999999888776321 24455566677889999999999999988763221 1
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
. ....-|.++...++|.+ ...|-.+.+
T Consensus 502 ~----~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 502 A----PKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp H----HHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred H----HHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 1 22334777788888888 766666653
No 197
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.90 E-value=1.3 Score=31.70 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=48.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~d~~~a~~~l~~a~~~ 139 (358)
..+|.++...|++++|.+.++........ ....+++.....++... |++.+|..++..+...
T Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 44 LMKGKALYNLERYEEAVDCYNYVINVIED----------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCC----------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcc----------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 46899999999999999999988876421 01234556667888899 9999999999987543
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=86.87 E-value=2.6 Score=29.82 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 115 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 115 ~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
.....+...|++.+|...++++...... ++. ......|.++...++|.+|...|-.+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV--GKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS--THH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456778899999999999998765211 121 14445588899999999999999888653
No 199
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.15 E-value=4 Score=29.84 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=36.4
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC
Q 018294 276 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 321 (358)
Q Consensus 276 ~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~ 321 (358)
.+......++..+||+.+|++..-+-..|..|...|.|...-+..+
T Consensus 29 ~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 29 KMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 3333346799999999999999999999999999999976555433
No 200
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=86.09 E-value=1.7 Score=32.95 Aligned_cols=60 Identities=13% Similarity=-0.090 Sum_probs=47.3
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
..+|.++...|++++|...++.....-++ ..+.+.....++...|++.+|...++++...
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARMLDPK------------DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46899999999999999999988777321 1345556667888999999999999987654
No 201
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=85.57 E-value=2.5 Score=42.68 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=65.0
Q ss_pred hhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhh
Q 018294 75 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 154 (358)
Q Consensus 75 ~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~ 154 (358)
...|++++|.+.++..........+..+ ....+.+......+...|++.+|...++++...... ++ ....
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~a~~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF----SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RW----RLVW 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CH----HHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hH----HHHH
Confidence 5678999999999888721110000001 123455667778899999999999999998775321 12 2444
Q ss_pred hhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 155 CGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 155 ~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
..|.++...++|.+|...|-.+..
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 558889999999999999998864
No 202
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=85.30 E-value=3.4 Score=36.68 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=60.2
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|.++...|++++|.+++++....-+. + .. .++.....++...|++..|+.+++++...... ++.
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~----~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~ 169 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDI-----D----PT--LVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHH 169 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----C----TH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccc-----C----cc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHH
Confidence 36788888889999999888888764211 1 11 14445556677788999999999888764221 111
Q ss_pred hhHHHhhhhhhhHh-hhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKMHM-AERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~~~-~~~~y~~A~~~f~e~~~~~ 180 (358)
+....|.+.. ..|++.+|...|-.+...+
T Consensus 170 ----~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 170 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp ----HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1111122222 2588888888887776544
No 203
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=85.08 E-value=14 Score=32.58 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhh
Q 018294 80 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 159 (358)
Q Consensus 80 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~ 159 (358)
+++|..++++....+. + + ...++.....++...|++.+|+.+|+++.+.... ++. .++...|.+
T Consensus 80 ~~~A~~~~~rAl~~~~-p----~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~~~~~ 143 (308)
T 2ond_A 80 SDEAANIYERAISTLL-K----K------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPT---LVYIQYMKF 143 (308)
T ss_dssp HHHHHHHHHHHHTTTT-T----T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-c----c------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Ccc---HHHHHHHHH
Confidence 4899998888877431 1 1 1234555566777899999999999999874211 122 134444677
Q ss_pred HhhhhcHHHHHHHHHHHhh
Q 018294 160 HMAERQWADAATDFFEAFK 178 (358)
Q Consensus 160 ~~~~~~y~~A~~~f~e~~~ 178 (358)
....+++.+|...|-.+..
T Consensus 144 ~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHh
Confidence 7788999999998888765
No 204
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.04 E-value=13 Score=30.31 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=49.9
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 141 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~ 141 (358)
+-.+-+++.|.|+.|.-+..-+.........+.. ...+.+++..-...++..++|.+|..+|++|.....
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s---p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS---PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 4556677888999887666665555433221111 366788888888899999999999999999865443
No 205
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=84.45 E-value=3.1 Score=31.63 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=49.6
Q ss_pred HHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHHHHHHHHH
Q 018294 269 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQLRS 348 (358)
Q Consensus 269 i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~w~~~i~~ 348 (358)
.|...+..+. -..++..+||+.+|++..-+-..|..|...|.|...-+.......++ ++ ....+..|......
T Consensus 19 ~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~-~~----~~~~l~~~~~~~~~ 91 (118)
T 3f6o_A 19 TRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE-KE----PFTAVEAWLAEQQE 91 (118)
T ss_dssp HHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC-SH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC-HH----HHHHHHHHHHHHHH
Confidence 4444443333 25579999999999999999999999999999988766322222222 22 24555566555544
Q ss_pred HH
Q 018294 349 LY 350 (358)
Q Consensus 349 l~ 350 (358)
+.
T Consensus 92 ~~ 93 (118)
T 3f6o_A 92 LW 93 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 206
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=84.30 E-value=13 Score=30.15 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh------hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhhhhh
Q 018294 109 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP------RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 182 (358)
Q Consensus 109 ~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~------~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~~~~ 182 (358)
..+.+......++..|++..|-..|+++..+....++. ......+.-.|..+...++|.+|..+|-.+.+-|+.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34455566667788999999999999999887653211 012234555688888999999999999998876665
Q ss_pred hc
Q 018294 183 AG 184 (358)
Q Consensus 183 ~~ 184 (358)
.+
T Consensus 90 ~~ 91 (159)
T 2hr2_A 90 RG 91 (159)
T ss_dssp HC
T ss_pred cc
Confidence 43
No 207
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=83.92 E-value=16 Score=33.91 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=34.7
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
.++.++...|++++|.+.+++....-+. ...++.....+|...|++.+|...+.++...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPG------------VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSS------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCcc------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 4455555667788888888777655321 1233445566777888888888888887654
No 208
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=83.81 E-value=5.4 Score=29.69 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=48.2
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeeccCCE---EEEccCCc-cchHHHHHHHHHHH
Q 018294 281 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRSK-GMKKYTAIDKWNSQ 345 (358)
Q Consensus 281 y~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~~~g~---v~~~~~~~-~~~~~~~l~~w~~~ 345 (358)
...+++.+|++.+ |++..-+-..|.+|...|.|..+.|..++. +.+++... .-.....+.+|...
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~~l~~w~~~ 94 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXAWGAN 94 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHHHHHHHHHH
Confidence 4578999999999 999999999999999999999888876653 33333321 11234566667764
No 209
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.60 E-value=2.5 Score=29.81 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=31.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
..++..+||+.+|+|...|-..|..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999999974
No 210
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=82.98 E-value=3.5 Score=30.87 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=33.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
..+++.+||+.+|++..-+-..|..|...|.|...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 211
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=82.75 E-value=3.3 Score=31.89 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=47.7
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCccceeeecc--CCEEEEccCCccch----HHHHHHHHHHHHHHHHH
Q 018294 284 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV--NRLLERGDRSKGMK----KYTAIDKWNSQLRSLYQ 351 (358)
Q Consensus 284 I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~--~g~v~~~~~~~~~~----~~~~l~~w~~~i~~l~~ 351 (358)
++..+||+.+|++..-|-..|.+|...|.|.-.-+.. .|........+... +.+.+.+|.+.+.....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 116 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQELK 116 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997654433 23333332222222 34456667777766544
No 212
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=82.48 E-value=7.6 Score=28.10 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeec
Q 018294 269 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 269 i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~ 319 (358)
.|...+..+.+ ..+++.+||+.+|++..-+-..|..|...|.+...-+.
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 24 RRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp HHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34444444443 67999999999999999999999999999999876443
No 213
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=82.39 E-value=12 Score=33.25 Aligned_cols=101 Identities=6% Similarity=-0.184 Sum_probs=71.4
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
....+|.++++.|+|++|...++...... + .....+++...-..+..+|++.+|...|.++.. +..+
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d---~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-------D---KFLAGAAGVAHGVAAANLALFTEAERRLTEAND---SPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-------C---cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCC
Confidence 34567889999999999999996332211 1 122234555666778889999999999998753 1112
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
|........+.|..+...|+..+|...|-+++..
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4433344466799999999999999999988754
No 214
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.22 E-value=6 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=35.2
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeecc
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 320 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~ 320 (358)
....++..+||+.+|++..-+-..|..|...|.+...-|..
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 34468999999999999999999999999999997655533
No 215
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.13 E-value=9.4 Score=28.28 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=33.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
..++..+||+.+|++..-+-..|..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999977655
No 216
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.92 E-value=8.7 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=39.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~ 327 (358)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .+.++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT 97 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEIT 97 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEEC
Confidence 677999999999999999999999999999999876665443 44444
No 217
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=81.87 E-value=6 Score=30.70 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=33.9
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 277 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 277 ~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
++.... ++..+||+.+|++..-+-..|.+|...|.|.-.-|..++.
T Consensus 46 ~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 46 LLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 333445 9999999999999999999999999999998877655554
No 218
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.76 E-value=6.7 Score=30.13 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=37.6
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
...++..+||+.+|++...+-..|-+|...|.|.-..|..++.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 3469999999999999999999999999999998777766554
No 219
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=81.58 E-value=7.1 Score=29.89 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=37.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
...++..+||+.+|++...+-..+.+|...|.|.-..|..++.
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 3468999999999999999999999999999998877766553
No 220
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.53 E-value=9.1 Score=30.92 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=50.5
Q ss_pred hHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 018294 62 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 138 (358)
Q Consensus 62 ~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~ 138 (358)
.|+.+-++.|.+ .+.+|.++|.++++.....+. .+ ..+++.-++.-.++||+.+|+.++.+|..
T Consensus 59 rYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-----------kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 59 SFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-----------KF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT-----------TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH-----------HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 455666778866 677999999999999887632 23 66777777788889999999999998865
No 221
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.41 E-value=8.7 Score=29.35 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=37.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
..++..+||+.+|++..-+-..|.+|...|.|.-..|..++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 479999999999999999999999999999998777665553
No 222
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=81.38 E-value=2.1 Score=34.12 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=41.0
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCc
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 331 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 331 (358)
++..+...... +.++||+.+++|+..+++++.+|...|.|...=. ..|..-..++++
T Consensus 14 ~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p~~ 70 (145)
T 1xd7_A 14 ILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKDPAD 70 (145)
T ss_dssp HHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSCGGG
T ss_pred HHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCCHHH
Confidence 33444443345 9999999999999999999999999999976544 444444343333
No 223
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.28 E-value=7.3 Score=29.76 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=38.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
...++..+||+.+|++..-+-..+.+|...|.|.-.-|..++.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 4678999999999999999999999999999998877766554
No 224
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.25 E-value=7.4 Score=30.04 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=40.9
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 279 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 279 ~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
.....++..+||+.+|++..-+-..|-+|...|.|.-..|..+ ..+.+++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~ 100 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTP 100 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECH
Confidence 3456799999999999999999999999999999987665544 3555554
No 225
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=81.13 E-value=8.3 Score=37.01 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=61.5
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|.++...|++++|.++++.....-. .+ ...++..-++++...|++.+|+.++.++...... .+.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~ 391 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIED-----ID------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHH 391 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS-----SC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccc-----cC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chH
Confidence 3677888888999999999988876421 11 1135555566677788999999999988764221 111
Q ss_pred hhHHHhhhhhhh-HhhhhcHHHHHHHHHHHhhhh
Q 018294 148 IMGIIRECGGKM-HMAERQWADAATDFFEAFKNY 180 (358)
Q Consensus 148 ~~~~i~~~~g~~-~~~~~~y~~A~~~f~e~~~~~ 180 (358)
.....|.+ +...|++.+|...|-.+...+
T Consensus 392 ----~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 392 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp ----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 11111222 224788888888887776544
No 226
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.91 E-value=5.7 Score=30.77 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
..++..+||+.+|++..-+-..|-+|...|.|.-.-|..+ ..|.+++
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 99 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTD 99 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECH
Confidence 6799999999999999999999999999999987665444 4566654
No 227
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=80.62 E-value=8.1 Score=30.06 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=35.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 346999999999999999999999999999999877665554
No 228
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.50 E-value=33 Score=30.98 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=29.3
Q ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 018294 220 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIM 253 (358)
Q Consensus 220 ~p~~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~ 253 (358)
.|.+.++.-|+.+...++..-|..+.++|++.+.
T Consensus 242 ~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~ 275 (312)
T 2wpv_A 242 YSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ 275 (312)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH
T ss_pred CccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5778888889999999999999999999987654
No 229
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=80.29 E-value=8 Score=29.67 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=37.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 327 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~ 327 (358)
..++..+||+.+|++..-+-..|-+|...|.|.-.-|..++ .|..+
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT 94 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEEC
Confidence 47999999999999999999999999999999877666554 44444
No 230
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=80.25 E-value=5.2 Score=32.44 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=39.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 331 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 331 (358)
..++.++||+.+++|+..+++.+.+|...|.+...=....|..-..++++
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~e 92 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEK 92 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHH
Confidence 46999999999999999999999999999999766444344444444333
No 231
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=80.23 E-value=7.2 Score=31.04 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=40.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~ 327 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..++ .|.++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEEC
Confidence 357999999999999999999999999999999888776665 44444
No 232
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=79.64 E-value=8.2 Score=29.77 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=39.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~ 327 (358)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .+.++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT 90 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYAT 90 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEC
Confidence 346899999999999999999999999999999877765544 34444
No 233
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=79.64 E-value=5.9 Score=29.78 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcccccccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCC-ccchHHHHHHHHHH
Q 018294 267 KNVRTQVLLKLIKPYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS-KGMKKYTAIDKWNS 344 (358)
Q Consensus 267 ~~i~~~~l~~~~~~y~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~-~~~~~~~~l~~w~~ 344 (358)
..-+...+..+...-.++++.+|++.+ |++..-+-..|..|-..|.|.-+.+ .......++.. ........+.+|..
T Consensus 26 ~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~ 104 (111)
T 3df8_A 26 KKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYIS 104 (111)
T ss_dssp STTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHH
Confidence 333444444444322346699999999 9999999999999999999998887 44444444321 11124566777877
Q ss_pred HHH
Q 018294 345 QLR 347 (358)
Q Consensus 345 ~i~ 347 (358)
...
T Consensus 105 ~~~ 107 (111)
T 3df8_A 105 VLD 107 (111)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.51 E-value=8.9 Score=27.95 Aligned_cols=66 Identities=5% Similarity=-0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh-hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 113 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 113 ~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
+....+.++..|++.+|...+..|.+....-..+ .....+...-|..+...|++..|...+-++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3455678889999999999999998754322111 11234445668888999999999998888753
No 235
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=79.19 E-value=4.5 Score=31.39 Aligned_cols=43 Identities=5% Similarity=0.040 Sum_probs=29.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..++.
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 3469999999999999999999999999999998777766653
No 236
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=79.12 E-value=5.7 Score=31.47 Aligned_cols=49 Identities=20% Similarity=0.079 Sum_probs=37.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
..++.++||+.+|+|+..+++.+.+|-..|.+...=....|..-..+++
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 4699999999999999999999999999999876433333444333333
No 237
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.05 E-value=9 Score=29.54 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=37.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..++.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 3469999999999999999999999999999998877766553
No 238
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=78.56 E-value=9 Score=27.70 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=40.8
Q ss_pred ccccchhhH----HhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 281 YTRIRIPFI----SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 281 y~~I~l~~l----a~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
...++..+| |+.++++..-+-..|-+|...|.+.-..|.....+.+++.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 456889999 9999999999999999999999998877875555665543
No 239
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=78.46 E-value=9.7 Score=36.53 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=63.8
Q ss_pred hhhHHHHhh-------hchHh-------HHHHHHHHHHH-hcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 018294 68 LKLCKIWFD-------MGEYG-------RMSKILKELHK-SCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 132 (358)
Q Consensus 68 ~~la~~~~~-------~g~~~-------~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~ 132 (358)
+.+|.++.. .|+++ +|.+++++... .+++ ...++..-+.++...|++.+|+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------------~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------------NMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHhcCCHHHHHHH
Confidence 356666664 68876 78888777765 3221 134455556677789999999999
Q ss_pred HHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 133 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 133 l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
|+++...... ++ ..++...|......+++.+|...|-.+...
T Consensus 344 ~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 344 YNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHSSSS--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCcccc--Cc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998875211 12 224444566667788999999888887654
No 240
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.36 E-value=8.5 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=36.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 457999999999999999999999999999999876665444
No 241
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=78.30 E-value=3.3 Score=32.70 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce---eeecc
Q 018294 274 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 320 (358)
Q Consensus 274 l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a---kID~~ 320 (358)
|+..+....++++.+||+.+|+|...+-..+.+|...|.|.. .+|+.
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344444457899999999999999999999999999999964 56754
No 242
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.10 E-value=6.9 Score=29.92 Aligned_cols=42 Identities=2% Similarity=0.133 Sum_probs=36.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 456999999999999999999999999999999876665544
No 243
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=78.02 E-value=14 Score=30.65 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=59.7
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhhcc
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK----NNKKLKQLYQKALAIKSA 142 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----d~~~a~~~l~~a~~~~~~ 142 (358)
...||.++...|++++|.++++..-.. | + .+.+.....+|.. + |+.+|..++.++...
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g--~-------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ-----G--D-------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT-----T--C-------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-----C--C-------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 457999999999999999999887553 1 1 1122223344555 6 899999999998542
Q ss_pred CCChhhhHHHhhhhhhhHhh----hhcHHHHHHHHHHHhh
Q 018294 143 IPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 178 (358)
Q Consensus 143 ~~~~~~~~~i~~~~g~~~~~----~~~y~~A~~~f~e~~~ 178 (358)
.+|..+. .-|.++.. .+|+.+|...|..+.+
T Consensus 83 -g~~~a~~----~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 83 -GSKSGEI----VLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp -TCHHHHH----HHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred -CCHHHHH----HHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 1333221 22555655 7899999998888754
No 244
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=78.00 E-value=11 Score=30.43 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred hhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHH-HH---HHHhcCHHHHHHHHHHHHhhhccCCChhhhHH
Q 018294 76 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI-QM---YTETKNNKKLKQLYQKALAIKSAIPHPRIMGI 151 (358)
Q Consensus 76 ~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~---~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~ 151 (358)
..+.|++|.+.+......-++. .+ ....+...+.+. ++ --+++.+.+|...++++.++ +|... .
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~---ae---a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~-~ 81 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLD---AD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD-E 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTC---HH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-H
T ss_pred HHhHHHHHHHHHHHHHHHCCCC---HH---HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcH-H
Confidence 3456788888777777664321 11 122233222211 10 00123367888888988876 33322 2
Q ss_pred HhhhhhhhHhhh-----------hcHHHHHHHHHHHhh
Q 018294 152 IRECGGKMHMAE-----------RQWADAATDFFEAFK 178 (358)
Q Consensus 152 i~~~~g~~~~~~-----------~~y~~A~~~f~e~~~ 178 (358)
...+.|.++... ++|.+|..+|-.+.+
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 223346666554 478888887777653
No 245
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=77.99 E-value=4.2 Score=31.41 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=35.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
..++.++||+.+|+|...+++.+..|...|.|...=....|..-..+
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCC
Confidence 56899999999999999999999999999998654322334444333
No 246
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=77.91 E-value=8.4 Score=30.05 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=40.0
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
....++..+||+.+|++..-+-..|-+|...|.|.-.-|..+ ..+.+++
T Consensus 51 ~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 102 (152)
T 3bj6_A 51 LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEECh
Confidence 345799999999999999999999999999999987665444 3555553
No 247
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.71 E-value=11 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=36.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
..++..+||+.++++..-+-..|.+|...|.|.-.-|..++
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 46999999999999999999999999999999877665544
No 248
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=77.69 E-value=3.3 Score=33.42 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc---eeeecc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 320 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~---akID~~ 320 (358)
+.++....++++.+||+.+|+|...+-..+.+|...|.|. +.+|..
T Consensus 16 l~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 16 LQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 3444445679999999999999999999999999999996 456654
No 249
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=77.69 E-value=1.2 Score=33.42 Aligned_cols=44 Identities=25% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcccee
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 316 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ak 316 (358)
.+..+..+=..++..+||+.+|+|...|-..|..|...|.+...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33334445546899999999999999999999999999999754
No 250
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.67 E-value=11 Score=29.15 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=37.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
...++...||+.+|++..-+-..|.+|...|.|.-..|..+ ..+.+++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 56799999999999999999999999999999977655544 3455553
No 251
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=77.27 E-value=8.4 Score=30.49 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=38.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
...++..+||+.++++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 356999999999999999999999999999999877766554 455543
No 252
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=77.20 E-value=9.9 Score=31.29 Aligned_cols=43 Identities=12% Similarity=0.280 Sum_probs=38.8
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
|...++...||+.+|++..-+-..|-+|...|.|.-.-|..++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 4567999999999999999999999999999999888877665
No 253
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=76.95 E-value=3.2 Score=33.57 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=40.8
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc---eeeecc
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 320 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~---akID~~ 320 (358)
.|+..++.-.++++.+||+.+|+|+..+-.-+-+|...|.|. +.+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 345566666789999999999999999999999999999986 567764
No 254
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=76.94 E-value=3.2 Score=29.74 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=33.3
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 276 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 276 ~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
.+++... ++..+||+.||+|...|-..|-+|-.+|.|..
T Consensus 24 ~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 24 KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444333 99999999999999999999999999999865
No 255
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=76.73 E-value=10 Score=29.74 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=39.0
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 277 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 277 ~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
++.....++..+||+.+|++..-+-..|-+|...|.|.-..|..+ ..+.+++
T Consensus 51 ~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 51 CLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp HHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred HHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 333345799999999999999999999999999999976555444 3455553
No 256
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=76.48 E-value=12 Score=30.06 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=36.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
..++..+||+.+|++..-+-..|.+|...|.|.-..|..++
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 46999999999999999999999999999999877776554
No 257
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=76.40 E-value=13 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=37.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
..++..+||+.+|+|..-+-..+.+|...|.|.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 56999999999999999999999999999999887776654
No 258
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=76.34 E-value=3.6 Score=32.67 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=38.8
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce---eeecc
Q 018294 274 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 320 (358)
Q Consensus 274 l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a---kID~~ 320 (358)
|+..+....+++..+||+.+|+|...+-..+.+|...|.|.+ .+|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 334444557899999999999999999999999999999963 46654
No 259
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=76.23 E-value=10 Score=30.19 Aligned_cols=95 Identities=8% Similarity=0.061 Sum_probs=54.5
Q ss_pred hhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCCh
Q 018294 67 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 146 (358)
Q Consensus 67 ~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~ 146 (358)
...+|.++...|++++|...++.+...-+ + ...... ...+. +...++...+...++++..... .++
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~----~~~~~~-~~~~~-~~~~~~~~~a~~~~~~al~~~P--~~~ 108 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPLEYQ------D----NSYKSL-IAKLE-LHQQAAESPELKRLEQELAANP--DNF 108 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCGGGC------C----HHHHHH-HHHHH-HHHHHTSCHHHHHHHHHHHHST--TCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhhccC------C----hHHHHH-HHHHH-HHhhcccchHHHHHHHHHHhCC--CCH
Confidence 35689999999999999998877644321 1 111111 11111 1122233345666776665421 122
Q ss_pred hhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 147 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 147 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
. .....|.++...|+|.+|...|..+...
T Consensus 109 ~----~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 109 E----LACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred H----HHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 2 2333477788889999999888887643
No 260
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=76.20 E-value=12 Score=29.54 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~ 327 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..+ ..+.++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 113 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT 113 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEEC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 45699999999999999999999999999999987665444 344444
No 261
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=75.86 E-value=6.9 Score=29.50 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
..+++.++......-..|=..+ +...||+.||+|..-|.+-+..|..+|.|..+ +..|+.+.
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 4566666666656666788889 89999999999999999999999999997543 45565554
No 262
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=75.80 E-value=9.4 Score=28.27 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=46.5
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeeccCCE---EEEccCC-ccchHHHHHHHHHH
Q 018294 281 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRS-KGMKKYTAIDKWNS 344 (358)
Q Consensus 281 y~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~~~g~---v~~~~~~-~~~~~~~~l~~w~~ 344 (358)
...+++.+|++.+ |++..-+-..|.+|...|.|.-+.|..++. +.+++.. ..-.....+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHHHHHHHHH
Confidence 4568999999999 599999999999999999999888766543 3333321 11123456666765
No 263
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.68 E-value=3.1 Score=33.15 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce---eeecc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 320 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a---kID~~ 320 (358)
+..+....++++.+||+.+|+|...+-..+.+|...|.|.+ .+|+.
T Consensus 14 l~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 14 LEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 34444457899999999999999999999999999999964 67765
No 264
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=75.44 E-value=4.8 Score=32.10 Aligned_cols=47 Identities=6% Similarity=-0.037 Sum_probs=36.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
..++.++||+.+++|+..+++.+.+|...|.|...=. ..|..-..++
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCCh
Confidence 5689999999999999999999999999999875433 3344443333
No 265
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=75.27 E-value=15 Score=26.82 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=44.6
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHH---HHHHHHHHHHHHh
Q 018294 284 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK---WNSQLRSLYQTVS 354 (358)
Q Consensus 284 I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~---w~~~i~~l~~~v~ 354 (358)
++...||..+|+++.-+...+-.|...|.|.-. .|-..+++... ...+.+.. +...+..+...+.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~----~~~~~LT~kG~--~~l~~l~~~~~~l~~l~~~e~~l~ 88 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE----GKQYMLTKKGE--ELLEDIRKFNEMRKNMDQLKEKIN 88 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE----CCeeEEChhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998654 33355554322 23344444 4444444444443
No 266
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=74.63 E-value=4.8 Score=31.92 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=37.4
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc---eeeecc
Q 018294 276 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 320 (358)
Q Consensus 276 ~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~---akID~~ 320 (358)
..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 14 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 14 RELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 334444679999999999999999999999999999995 456654
No 267
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=74.57 E-value=21 Score=27.63 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=47.3
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeeccCCE---EEEccCCc-cchHHHHHHHHHHHH
Q 018294 281 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRSK-GMKKYTAIDKWNSQL 346 (358)
Q Consensus 281 y~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~~~g~---v~~~~~~~-~~~~~~~l~~w~~~i 346 (358)
...+++.+|++.+ |++..-+-..|-+|...|.|.-+.|..++. +.+++... .-.....+.+|....
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~l~~w~~~~ 116 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAALADWIELN 116 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHHHHHHHHHHH
Confidence 4578999999999 799999999999999999999888876653 33333211 112234556676543
No 268
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.35 E-value=6.4 Score=30.54 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=39.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
..++..+||+.+|++..-+-..|-+|...|.|.-.-|..+ ..|.+++
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 4599999999999999999999999999999986555544 4566664
No 269
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=74.33 E-value=8.2 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=35.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~ 327 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..++ .|.++
T Consensus 52 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT 101 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
T ss_dssp SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEEC
Confidence 458999999999999999999999999999999766555443 45544
No 270
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=74.08 E-value=11 Score=29.80 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=32.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
...++..+||+.+|++..-+-..|-+|...|.|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 457999999999999999999999999999999766654444
No 271
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=74.03 E-value=3.5 Score=33.78 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc---eeeecc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 320 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~---akID~~ 320 (358)
+..+....++++.+||+.+|+|+..+-..+.+|...|.|. +.+|..
T Consensus 33 L~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 33 IKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 3344445689999999999999999999999999999995 457763
No 272
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=73.62 E-value=7.2 Score=30.57 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=39.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccce--eeeccCC---EEEEcc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGD 328 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a--kID~~~g---~v~~~~ 328 (358)
...++..+||+.++++..-+-..|.+|...|.|.- .-|..++ .+.+++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 35699999999999999999999999999999987 6665554 566654
No 273
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=73.52 E-value=17 Score=29.12 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=36.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..+ ..|.+++
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 4599999999999999999999999999999987665544 4566654
No 274
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=73.51 E-value=7.1 Score=28.14 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=30.9
Q ss_pred ccchhhHHhHhCCChHH-HHHHHHHhhhcCccc
Q 018294 283 RIRIPFISKELNVPEKD-VEQLLVSLILDNRID 314 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~-vE~~l~~lI~~g~i~ 314 (358)
.++..+||+.+|++..- +-..|.+|...|.|.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999997
No 275
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.22 E-value=42 Score=31.18 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=48.9
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHH
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 131 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~ 131 (358)
.+....+++|+..|++.+|.+.+.++........+. + ......+|...+.+|...+++..+..
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~-~---~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI-P---LRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS-S---SHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc-c---HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344568999999999999999999999877654433 2 35678888888888888888876443
No 276
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.84 E-value=9.8 Score=30.17 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=37.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
..++..+||+.+|++..-+-..|-+|...|.|.-.-|..+ ..|.+++
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~ 115 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECH
Confidence 4799999999999999999999999999999987665544 4566654
No 277
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=72.77 E-value=11 Score=28.82 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=38.8
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
.++..+||+.+|++...+-..|-+|...|.|.-.-|..++ .+.+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 6999999999999999999999999999999876665554 455543
No 278
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=72.57 E-value=4.9 Score=31.79 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=39.1
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce---eeecc
Q 018294 274 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 320 (358)
Q Consensus 274 l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a---kID~~ 320 (358)
|+..+....+++..+||+.+|+|...+-..+.+|...|.|.. .+|..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 344444456899999999999999999999999999999965 67764
No 279
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.36 E-value=3.9 Score=32.52 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=37.8
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc---eeeecc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 320 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~---akID~~ 320 (358)
+..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|..
T Consensus 13 l~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 13 IKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 3344444689999999999999999999999999999995 456653
No 280
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.30 E-value=5.4 Score=32.62 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=38.0
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc---eeeecc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 320 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~---akID~~ 320 (358)
+..+..-.++++.+||+.+|+|...+-..+-+|...|.|. +.+|+.
T Consensus 23 L~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 3344444679999999999999999999999999999996 456664
No 281
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=72.07 E-value=25 Score=26.11 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=38.1
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeeccCCEE
Q 018294 282 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 324 (358)
Q Consensus 282 ~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~~~g~v 324 (358)
..+++.+||+.+ |++..-+-..|.+|...|.|....|..++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~ 77 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPR 77 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 468999999999 9999999999999999999998887765543
No 282
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=71.56 E-value=7.9 Score=29.86 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
..+++.++...+..-..|=.++ +...||+.||+|..-|..-+..|..+|.|.. .+..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 4566667666555566788899 9999999999999999999999999999854 3455666654
No 283
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=71.45 E-value=7.7 Score=33.98 Aligned_cols=61 Identities=8% Similarity=-0.047 Sum_probs=48.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 140 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~ 140 (358)
..+|..+...|++++|.+.+......-.+ ....+......+...|++.+|...+.++....
T Consensus 42 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 42 TNRALCYLKMQQPEQALADCRRALELDGQ------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46899999999999999998887765211 13445566778889999999999999987754
No 284
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=71.00 E-value=7 Score=30.02 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=38.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~ 327 (358)
...++..+||+.+|++..-+-..+.+|...|.|.-.-|..++ .+.++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT 92 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPT 92 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 356999999999999999999999999999999877665444 44444
No 285
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.84 E-value=16 Score=26.26 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 126 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 126 ~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
..+++..++++... +|.-. +-....|..++..++|.+|...|-..++.
T Consensus 25 ~~~A~~~l~~AL~~-----dp~~~-rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQL-----EPYNE-AALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH-----CcCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78999999999876 33311 12233499999999999999988887654
No 286
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=70.80 E-value=9 Score=29.45 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 262 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 262 ~~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
...+++.++...+..-+.|=.++ +...||+.||+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 34566667666555566777888 59999999999999999999999999988543 445666554
No 287
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=70.72 E-value=27 Score=25.22 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=37.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
...++.+||+.+|++..-+-..|..|...|.+..+-+.......++
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 4589999999999999999999999999999987655443344333
No 288
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=70.46 E-value=14 Score=28.73 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=32.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..++.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998766666553
No 289
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=70.45 E-value=4.8 Score=26.50 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=30.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
--+.++.+|+.+|++.++|-..|-+|=..|.|.
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 358999999999999999999999999999874
No 290
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=69.86 E-value=5.7 Score=30.96 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=34.6
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 276 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 276 ~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
..+....++++.+||+.+|+|..-+-..+.+|...|.|.+
T Consensus 11 ~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 11 EILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 3444456789999999999999999999999999999964
No 291
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=69.06 E-value=28 Score=26.99 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=48.6
Q ss_pred ccccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeeccCCE---EEEccCC-ccchHHHHHHHHHHHH
Q 018294 281 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL---LERGDRS-KGMKKYTAIDKWNSQL 346 (358)
Q Consensus 281 y~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~~~g~---v~~~~~~-~~~~~~~~l~~w~~~i 346 (358)
....++.+|++.+ |++..-+-..|.+|..+|.|.=+.+..++. +..++.. ........+.+|...=
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~ 107 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESN 107 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 999999999999999999998777765542 2333321 1223456777787653
No 292
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=69.02 E-value=13 Score=40.85 Aligned_cols=78 Identities=10% Similarity=0.191 Sum_probs=53.6
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
++|.++.+.|.|++|..+++..... ...+.++ +...+++.+|.++++++ ..|.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~-------------~~A~~VL------ie~i~nldrAiE~Aerv-------n~p~- 1106 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVN-------------TSAVQVL------IEHIGNLDRAYEFAERC-------NEPA- 1106 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCH-------------HHHHHHH------HHHHhhHHHHHHHHHhc-------CCHH-
Confidence 6799999999999999998875311 1123332 22678888888776643 2333
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHH
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEA 176 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~ 176 (358)
++..-|..+...|+|.+|...|..+
T Consensus 1107 ---vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1107 ---VWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3334488888889999998888664
No 293
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.95 E-value=21 Score=29.06 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhcc---CCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 114 AIEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 114 ~~~~~~~~~~~d~~~a~~~l~~a~~~~~~---~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
..+++-.+..+-+.-|..+.....+..+. ...|........+-|..++.+++|..|...|..+..-
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 56677778888899888888876665432 3346666677778899999999999999999997643
No 294
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=68.64 E-value=17 Score=31.65 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=61.8
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCC
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
....+|.++...|++++|...++.+...-. + ... ..+.....+...++...+...+.++..... .+
T Consensus 153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------~----~~~--~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~ 218 (287)
T 3qou_A 153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQ------D----TRY--QGLVAQIELLXQAADTPEIQQLQQQVAENP--ED 218 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCGGGC------S----HHH--HHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCchhhc------c----hHH--HHHHHHHHHHhhcccCccHHHHHHHHhcCC--cc
Confidence 445799999999999999999987754421 1 111 111222224456667777777777665421 12
Q ss_pred hhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhhh
Q 018294 146 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 179 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~~ 179 (358)
+. ....-|..+...|+|.+|...|.++...
T Consensus 219 ~~----~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 219 AA----LATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 22 2233378888899999999999887653
No 295
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=68.43 E-value=7.3 Score=28.92 Aligned_cols=56 Identities=7% Similarity=0.054 Sum_probs=42.2
Q ss_pred HHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 270 RTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 270 ~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
+...+ ..+.|-..+ +..+||+.||+|..-|..-+..|..+|.|...-.-..|+.+.
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 44444 556676777 999999999999999999999999999986532113465544
No 296
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=68.15 E-value=11 Score=30.47 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=32.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCcccee
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 316 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ak 316 (358)
-..++.++||+.+++|+..+++.+.+|-..|.+...
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 356999999999999999999999999999998654
No 297
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=68.02 E-value=36 Score=26.66 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=39.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
..++..+||+.+|++..-+-..|-+|...|.|.=..|..++ .|.+++
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCH
Confidence 34567899999999999999999999999999888887776 455554
No 298
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=67.91 E-value=3.3 Score=30.59 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
..+.+.++...+.....|-..+ +..+||+.||+|..-|...+..|...|.|..+ +..|+.+.
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~ 76 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVE 76 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEc
Confidence 4556666655444455666788 99999999999999999999999999998642 33455444
No 299
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=67.61 E-value=11 Score=29.13 Aligned_cols=62 Identities=5% Similarity=-0.002 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
..+++.++...+..-+.|=.++ +...||+.||+|..-|..-+..|..+|.|.. .+..|+.+.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 4556666665555556777889 8999999999999999999999999999854 345566554
No 300
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=67.39 E-value=3.8 Score=29.10 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHhcccccccchhhHHhHhCCChH-HHHHHHHHhhhcCccc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEK-DVEQLLVSLILDNRID 314 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~-~vE~~l~~lI~~g~i~ 314 (358)
+.+++.-...+...||+.||++.. .|-..|.+|-.+|.|.
T Consensus 17 L~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 17 CDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 356666667899999999999999 9999999999999996
No 301
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=67.20 E-value=41 Score=25.88 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
..+++.|+...+..-++|=.++ +...||+.||+|..-|..-+..|-.+|.|..+ +..|+.+...
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 5566777776666777888899 78999999999999999999999999998654 4557666443
No 302
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=66.46 E-value=12 Score=29.24 Aligned_cols=48 Identities=8% Similarity=0.139 Sum_probs=36.2
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCccce--eeeccCC---EEEEc
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERG 327 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a--kID~~~g---~v~~~ 327 (358)
....++..+||+.+|++..-+-..|.+|...|.|.- ..|..++ .|..+
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT 100 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLS 100 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEEC
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEEC
Confidence 557899999999999999999999999999999975 3355554 45554
No 303
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=66.33 E-value=21 Score=25.53 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=37.3
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
.++..+||+.++++..-+-..|.+|...|.|...-|.-...|.+++
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTD 75 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEECh
Confidence 4999999999999999999999999999999433444444566653
No 304
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=66.20 E-value=29 Score=26.56 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=35.9
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 285 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 285 ~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
+..+||+.+|++..-+-..|-+|...|.|.-.-|..++.
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 999999999999999999999999999998887776653
No 305
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=65.91 E-value=12 Score=29.35 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=37.1
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC---CEEEEcc
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGD 328 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~---g~v~~~~ 328 (358)
....++..+||+.+|++..-+-..|.+|...|.|.-.-|..+ ..+.+++
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 110 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTD 110 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEECh
Confidence 345799999999999999999999999999999976655444 3455553
No 306
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=65.74 E-value=15 Score=28.22 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=39.9
Q ss_pred HhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 276 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 276 ~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
.++.....++..+||+.++++..-+-..+-+|...|.|.-.-|..++ .|.+++
T Consensus 43 ~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 43 MAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp HHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred HHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 34433568999999999999999999999999999999877766554 555554
No 307
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=65.74 E-value=30 Score=29.79 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=37.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
....+.+.||+.+|+|+..|+..|.+|...|.+. -..+|.|.+.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEEC
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEec
Confidence 5689999999999999999999999999999886 2346666664
No 308
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=65.27 E-value=34 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=32.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 317 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akI 317 (358)
..+++.+||+.+|++..-+-..|..|...|.+...-
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 568999999999999999999999999999997643
No 309
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=64.95 E-value=14 Score=26.66 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=36.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
..+++.+||+.+|++..-+-..|..|...|.|...- |...++..
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 458999999999999999999999999999996532 55555543
No 310
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=64.69 E-value=17 Score=28.71 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=46.5
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC--EEEEccCC-ccchHHHHHHHHHHH
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR--LLERGDRS-KGMKKYTAIDKWNSQ 345 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g--~v~~~~~~-~~~~~~~~l~~w~~~ 345 (358)
....++.+|++.+|++..-+-..|-+|...|.|.-..+..++ .+.+++.. ..-.....+.+|...
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l~~l~~w~~~ 102 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVAIRQWGED 102 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999988876655 22233221 111223456667654
No 311
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=64.58 E-value=11 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=27.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEE
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 324 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v 324 (358)
..++..+||+.+|++..-+-..|-+|...|.|.-.-|..++..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 5789999999999999999999999999999987776666543
No 312
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=63.60 E-value=60 Score=26.53 Aligned_cols=60 Identities=7% Similarity=0.240 Sum_probs=29.5
Q ss_pred hhHHHHhh----hchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Q 018294 69 KLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALA 138 (358)
Q Consensus 69 ~la~~~~~----~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~ 138 (358)
.||.+|.. .+++++|.+++......-. . ....+.+.....+|.. .+|+.+|..++.++..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-----~-----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSE-----S-----DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-----S-----HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-----C-----cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45555555 4566666665554433210 0 0112333333444555 5566666666666644
No 313
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=62.86 E-value=25 Score=26.67 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=39.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~ 101 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNA 101 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH
Confidence 56999999999999999999999999999999876665554 455443
No 314
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=62.08 E-value=18 Score=26.50 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=33.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
..+++.+||+.+|++..-+-..|..|...|.+...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4579999999999999999999999999999976544
No 315
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=61.92 E-value=59 Score=30.49 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=32.5
Q ss_pred hhhHHHHhh----hchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Q 018294 68 LKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALA 138 (358)
Q Consensus 68 ~~la~~~~~----~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~ 138 (358)
..||.+|+. .+++++|.+.+...... | + .+.+.....+|.. .+|+.+|..++.++..
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~--~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----G--Y-------TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----C--C-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 456777766 67777777777666543 0 0 1122223345555 5677777777766543
No 316
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=61.88 E-value=21 Score=24.97 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=33.7
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 277 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 277 ~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
-+.+-...+...||+.||++...|-..|.+|-..|.+..
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 444556699999999999999999999999999998854
No 317
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=61.61 E-value=17 Score=27.81 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=39.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 99 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTD 99 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEECh
Confidence 346999999999999999999999999999999877665444 444443
No 318
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=60.91 E-value=26 Score=27.00 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=37.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
...++..+||+.+|++..-|-..|.+|...|.|.-. ..+.+.+++.
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~ 65 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSK 65 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchh
Confidence 456999999999999999999999999999988653 3466776643
No 319
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=60.10 E-value=47 Score=26.52 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=46.2
Q ss_pred hhhhHHHHhhhc---hHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 67 NLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 67 ~~~la~~~~~~g---~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
..++|--+...+ ++.++..+|+++...-. + ...-+.+.....-|.++||+.+|+.+.+.+..+
T Consensus 35 ~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~------p----~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 35 QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS------K----EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC------H----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC------c----cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345666666655 78899999999888630 0 124455556666788999999999999998876
No 320
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=59.84 E-value=7.7 Score=27.13 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHH
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVS 306 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~ 306 (358)
|-+.+++.||..+|++.++||..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88899999999999999999998764
No 321
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=59.26 E-value=20 Score=28.52 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=35.1
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..++.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 479999999999999999999999999999998888777663
No 322
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=57.61 E-value=1.2e+02 Score=28.19 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=53.3
Q ss_pred hhhhHHHHhh----hchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Q 018294 67 NLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALA 138 (358)
Q Consensus 67 ~~~la~~~~~----~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~ 138 (358)
...||.+|.. .+++++|.+++......- + ...+.....+|.. .+|+.+|..++.++..
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------L-------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------C-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4578999998 889999999998875531 1 1111223345555 6788888888887754
Q ss_pred hhccCCChhhhHHHhhhhhhhHhh----hhcHHHHHHHHHHHh
Q 018294 139 IKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAF 177 (358)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~g~~~~~----~~~y~~A~~~f~e~~ 177 (358)
.. ++..+. .-|.++.. .+++.+|...|..+.
T Consensus 144 ~~----~~~a~~----~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 144 QG----RDSGQQ----SMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp TT----CHHHHH----HHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CC----CHHHHH----HHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 31 222111 11444443 566777766665543
No 323
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=57.26 E-value=47 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=33.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
...++.+||+.+|++..-+-..|..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4588999999999999999999999999999976544
No 324
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.09 E-value=11 Score=29.52 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=36.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
...++..+||+.++++..-+-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 467899999999999999999999999999999866655544 555554
No 325
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=56.71 E-value=76 Score=25.52 Aligned_cols=52 Identities=8% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 121 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 121 ~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
...+|..+|++.|+.+.+. +... ++++...+..-..+|+...|.+-+-.+..
T Consensus 71 ~ei~D~d~aR~vy~~a~~~-----hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARAN-----CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHH-----CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH-----hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 5679999999999999875 4444 77877777777788888888887766654
No 326
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=56.71 E-value=86 Score=30.04 Aligned_cols=92 Identities=8% Similarity=0.087 Sum_probs=60.9
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 148 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~ 148 (358)
-+.+.+...|++++|.+++.++...--.| + ...|...+..|...|++.+|..+++.-... .-.++...
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~t 177 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQP----R-------LRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC----c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHH
Confidence 57778889999999999999998763322 1 233455667788899999999998875432 11223222
Q ss_pred hHHHhhhhhhhHhhhhcHHHHHHHHHHH
Q 018294 149 MGIIRECGGKMHMAERQWADAATDFFEA 176 (358)
Q Consensus 149 ~~~i~~~~g~~~~~~~~y~~A~~~f~e~ 176 (358)
...+ ...+...|++.+|...|.+.
T Consensus 178 y~~L----i~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 178 LAAL----LKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHH----HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH----HHHHhhCCCHHHHHHHHHHH
Confidence 2111 22345678888888877663
No 327
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=56.68 E-value=1.4e+02 Score=29.98 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=45.6
Q ss_pred hhhHHHHhhhchHhHHH-HHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 68 LKLCKIWFDMGEYGRMS-KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~-~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
++.|+++...|+.++|. +++......|+.+ ..+++.-+.+....|++.+|+.+|+++...
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s------------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNS------------AVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788888889988997 9998888777521 233445556667789999999999998764
No 328
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=56.64 E-value=14 Score=27.88 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=40.3
Q ss_pred HHhcccccccchhhHHhHh--CCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 275 LKLIKPYTRIRIPFISKEL--NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l--~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
+.++.....++...||+.+ |++...|-..|.+|...|.|... ..|...++
T Consensus 19 L~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT 70 (111)
T 3b73_A 19 LEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVIT 70 (111)
T ss_dssp HHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEEC
T ss_pred HHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEEC
Confidence 3444444589999999999 99999999999999999999874 45555554
No 329
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=56.36 E-value=63 Score=24.46 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=58.6
Q ss_pred hHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhccCCC
Q 018294 70 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPH 145 (358)
Q Consensus 70 la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~~~~~~~~ 145 (358)
||.+|..-+.+++|.+++...-.. |. .+.+.....+|.. .+|+.+|..++.++... .+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~ 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----NS---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----TC---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----CC---------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC
Confidence 888888888888888888776554 11 1122233445666 68999999999998653 13
Q ss_pred hhhhHHHhhhhhhhHhh----hhcHHHHHHHHHHHhh
Q 018294 146 PRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 178 (358)
Q Consensus 146 ~~~~~~i~~~~g~~~~~----~~~y~~A~~~f~e~~~ 178 (358)
|.-+.. -|.++.. .+|+.+|...|..+.+
T Consensus 93 ~~a~~~----Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 93 QDGCLI----LGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHH----HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 332222 2666666 8999999998888753
No 330
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=56.20 E-value=16 Score=28.40 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=37.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
...++..+||+.++++..-+-..|.+|...|.|.-..|..++ .+.+++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 109 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTE 109 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECH
Confidence 456999999999999999999999999999999876655443 566554
No 331
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.69 E-value=20 Score=28.55 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeec
Q 018294 267 KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 267 ~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~ 319 (358)
...|...+..+. -..++..+||+.+|++..-|-..|..|...|.|..+-|.
T Consensus 57 ~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~G 107 (151)
T 3f6v_A 57 EPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDG 107 (151)
T ss_dssp SHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 345555555444 356899999999999999999999999999999876543
No 332
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=55.51 E-value=18 Score=30.15 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=33.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCcccee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 316 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ak 316 (358)
..++..+||+.+|+|..-+-..|.+|...|.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999999775
No 333
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=55.05 E-value=34 Score=24.71 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=36.9
Q ss_pred hhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHH
Q 018294 66 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 121 (358)
Q Consensus 66 ~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 121 (358)
..+.-|+=++..|+|.+|.-++.++...+.++ + -.....+|+.+++--+
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~----~---i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALNLSDNE----E---IKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHccccCH----H---HHHHHHHHHHHHHHHh
Confidence 34556777889999999999999999887543 2 2457778888876543
No 334
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=54.91 E-value=18 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=39.6
Q ss_pred HHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 275 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 275 ~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
..+.+.-..+++.+||+.+|++..-|-..|.+|...|.|.-. . +.+.++.
T Consensus 23 ~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~ 72 (139)
T 2x4h_A 23 KRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITN 72 (139)
T ss_dssp HHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECH
T ss_pred HHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEECh
Confidence 344445567999999999999999999999999999987542 1 6666664
No 335
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.70 E-value=19 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=26.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
+...+..+||+.+|+|+.-|...+.+++..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478999999999999999999999987753
No 336
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=53.35 E-value=14 Score=28.43 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=38.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeecc---CCEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV---NRLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~---~g~v~~~~ 328 (358)
..++..+||+.++++..-+-..|.+|...|.|.-..|.. ...+.+++
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~ 102 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE 102 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 478999999999999999999999999999997665544 34566654
No 337
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=53.01 E-value=23 Score=30.32 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEE
Q 018294 260 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 325 (358)
Q Consensus 260 ~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~ 325 (358)
...+.+++.|+...+...+.|=.+++...||+.||+|..-|-.-|..|-..|.+.-+ +..|+.+
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~--~~~G~~V 89 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE--THKGAVV 89 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEE
Confidence 344567888888777777889899999999999999999999999999999988542 3345543
No 338
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=52.37 E-value=31 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.397 Sum_probs=30.7
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCcc
Q 018294 277 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 313 (358)
Q Consensus 277 ~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i 313 (358)
+-+.=+-++-..||+.+|++-.+|.+.+-+|=.+|+|
T Consensus 28 LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 28 LTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 3333456889999999999999999999999888775
No 339
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=52.36 E-value=74 Score=31.97 Aligned_cols=109 Identities=10% Similarity=0.126 Sum_probs=67.1
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhccc--------CCCCcch--hhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQR--------EDGTDDQ--KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 137 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~--------~~~~~~~--~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~ 137 (358)
+.+|.+.+..|+++.|.++++........ .+...+. ........+++.-+++..+.|++..|+.++..|.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888889999999998888765310 0000000 0011245577777888888899999999999997
Q ss_pred hhhccCCChhhhHHHhhhhhhhHhh-hhcHHHHHHHHHHHhhhhh
Q 018294 138 AIKSAIPHPRIMGIIRECGGKMHMA-ERQWADAATDFFEAFKNYD 181 (358)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~~g~~~~~-~~~y~~A~~~f~e~~~~~~ 181 (358)
+..... .+. +....+.+-.. .+++..|...|-.+...|.
T Consensus 462 ~~~~~~-~~~----lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 462 RLKKLV-TPD----IYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HTGGGS-CTH----HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HhcCCC-ChH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 641111 112 22222333333 3558888888877776654
No 340
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=51.64 E-value=41 Score=24.92 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=35.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
..+++.++|+.+|++..-+-..|.+|...|.+.-.- ..+.+..+.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~--~~r~~~~~~ 88 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR--AGRSIVYSL 88 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE--ETTEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEE
Confidence 368999999999999999999999999999885432 334444443
No 341
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=50.66 E-value=11 Score=29.04 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
..+++.++...+..-..|=..+ +...||+.||+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 4566666666655666788899 89999999999999999999999999988653 445655543
No 342
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.29 E-value=43 Score=21.57 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=36.0
Q ss_pred HHHHHHHhcccccccchhhHHhHh-----CCChHHHHHHHHHhhhcCccceeeeccCCEEE
Q 018294 270 RTQVLLKLIKPYTRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 325 (358)
Q Consensus 270 ~~~~l~~~~~~y~~I~l~~la~~l-----~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~ 325 (358)
|...|..++..-..++.++|++.| +++..-|-..|-+ .|.+ ++...+|...
T Consensus 6 R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~ 61 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCcee
Confidence 444455555555679999999999 9999988888873 4665 5665666543
No 343
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=49.61 E-value=38 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=32.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
..++.+||+.+|++..-+-..|..|...|.+..+-+
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 478899999999999999999999999999976544
No 344
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=48.87 E-value=40 Score=25.71 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=47.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhcccccccchhh-HHhHhCCChHHHHHHHHHhhhcCcc
Q 018294 253 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF-ISKELNVPEKDVEQLLVSLILDNRI 313 (358)
Q Consensus 253 ~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~-la~~l~l~~~~vE~~l~~lI~~g~i 313 (358)
+.|..|..+...|-++|..-. ..++++|+++|+++ +..++|++.-+...++-.+...|.+
T Consensus 17 l~d~el~~rar~LA~kIv~pv-~el~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLL 77 (121)
T 3kp1_E 17 LSDEELQTRFWEMAEKIVDPL-LDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLM 77 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcccc
Confidence 356777777777777776544 67889999999986 7999999988888877777777776
No 345
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=48.85 E-value=24 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=25.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
+.-.+..+||+.+|+|+.-|...+.++..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999888664
No 346
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=48.61 E-value=72 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=31.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
...++.+||+.+|++..-+-..|..|-.. .+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 45899999999999999999999999988 7776544
No 347
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=48.14 E-value=16 Score=28.02 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=30.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCc-cc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 314 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~-i~ 314 (358)
.-.+++.||+.-|++...++..|.+++..|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6789999999999999999999999999995 54
No 348
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=48.03 E-value=1.3e+02 Score=27.85 Aligned_cols=89 Identities=7% Similarity=0.014 Sum_probs=54.2
Q ss_pred hhhHHHHhhhc---hHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhh
Q 018294 68 LKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----KNNKKLKQLYQKALAIK 140 (358)
Q Consensus 68 ~~la~~~~~~g---~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----~d~~~a~~~l~~a~~~~ 140 (358)
..||.+|...| ++++|.+.+...-..-. .+ ...+.....+|... +|+.+|..++.++. .
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~-------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~ 245 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VT-------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA--P 245 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--G
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HH-------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--C
Confidence 47888888888 88888888877665521 11 11111222333333 68999999999875 1
Q ss_pred ccCCChhhhHHHhhhhhhh-H--hhhhcHHHHHHHHHHHh
Q 018294 141 SAIPHPRIMGIIRECGGKM-H--MAERQWADAATDFFEAF 177 (358)
Q Consensus 141 ~~~~~~~~~~~i~~~~g~~-~--~~~~~y~~A~~~f~e~~ 177 (358)
+ +|..+..+ |.+ + ...+|+.+|...|..+.
T Consensus 246 g---~~~a~~~L----g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 246 G---YPASWVSL----AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp G---STHHHHHH----HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred C---CHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 1 23322222 333 2 34789999999888865
No 349
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=48.02 E-value=45 Score=32.74 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchh-hHHhHhCCChHHHH
Q 018294 223 ILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIP-FISKELNVPEKDVE 301 (358)
Q Consensus 223 ~~~l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~-~la~~l~l~~~~vE 301 (358)
-+.+++-.+.|+. .|+++...++.--..||.+...+..-......-++..+..-|..+.+. .-.+-+..+++++|
T Consensus 485 r~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le 560 (571)
T 2pft_A 485 RQMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVG 560 (571)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHH
Confidence 3457777777766 688877776544447998875444433344444555555556666663 35567789999999
Q ss_pred HHHHHhh
Q 018294 302 QLLVSLI 308 (358)
Q Consensus 302 ~~l~~lI 308 (358)
..|.++.
T Consensus 561 ~~L~~LF 567 (571)
T 2pft_A 561 DMIDRLF 567 (571)
T ss_dssp HHHHTSS
T ss_pred HHHHHHh
Confidence 9998864
No 350
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=47.85 E-value=9.8 Score=32.53 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=38.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHH----HHHHHHHHHHHHHHHH
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYT----AIDKWNSQLRSLYQTV 353 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~----~l~~w~~~i~~l~~~v 353 (358)
-.++-.+||..+|++.+-+-..+.++..+|.|. ...|.|.+.+++......+ -+..|+..+++|-...
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~ 247 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILD----KKKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAAL 247 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEESCHHHHHHHHTSSCCCC--------------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE----eCCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhh
Confidence 367899999999999999999999999998774 3456677765433211111 1344777777776554
No 351
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=47.66 E-value=15 Score=28.37 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=39.2
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccC-CE-EEEccCCccchHHHHHHHHH
Q 018294 284 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN-RL-LERGDRSKGMKKYTAIDKWN 343 (358)
Q Consensus 284 I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~-g~-v~~~~~~~~~~~~~~l~~w~ 343 (358)
++.+.||+.+|+++..|...|.+++..|.|.=+-|..+ |. ...++-.+ +++++..+.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~p---l~~kL~~~~ 110 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEP---LWEKLVHHL 110 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHH---HHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHH---HHHHHHHHH
Confidence 79999999999999999999999999999965444332 32 23333332 567776644
No 352
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=47.06 E-value=20 Score=25.10 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=31.7
Q ss_pred cccccchhhHHhHh-CCChHHHHHHHHHhhhcCccc
Q 018294 280 PYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 280 ~y~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~ 314 (358)
+=+..-|.++++.| +..+-+|.+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 45688899999999 999999999999999999883
No 353
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=46.89 E-value=91 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 271 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 271 ~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
...++++.+ .-+.+..+||+.+|+|-..+...|--+=.+|.+.
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 345677888 8899999999999999999999999999999884
No 354
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=46.70 E-value=4.1 Score=36.15 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred cccchhhHHhHh-CCChHHHHHHHHHhhhcCccceeeec
Q 018294 282 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 282 ~~I~l~~la~~l-~l~~~~vE~~l~~lI~~g~i~akID~ 319 (358)
.=|+++.|++.+ ++++++|...|-.|+.+|.|+-.||.
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568889999999 79999999999999999999999995
No 355
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.76 E-value=26 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
+.-.+..+||+.+|+++.-|...+.++...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 667889999999999999999999887654
No 356
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=45.00 E-value=33 Score=22.81 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
+.-.+..+||+.+|+|+.-|...+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45569999999999999999998888653
No 357
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=44.99 E-value=61 Score=27.89 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 262 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 262 ~~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
...+.+.++.... . ..|=..+ +-..||+.+|+|..-|.+-+..|..+|.|.. +..|+.+...
T Consensus 16 y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 16 HQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 3556666666555 5 7777899 8999999999999999999999999999965 7777766543
No 358
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=44.85 E-value=29 Score=23.38 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=24.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
...+..+||+.+|+|+.-|...+.+++.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998887764
No 359
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=44.61 E-value=33 Score=23.89 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=26.1
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
+.-.+..+||+.+|++..-|...+.++...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567899999999999999999999887643
No 360
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=44.46 E-value=38 Score=27.75 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcccc-cccchhhHHhHhCCChHHHHHHHHHhhhcCc-cce
Q 018294 268 NVRTQVLLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNR-IDG 315 (358)
Q Consensus 268 ~i~~~~l~~~~~~y-~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~-i~a 315 (358)
.-|...|+.++..- ..++..+||+.||+|..-+...|..|-..|. |.+
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34555566666533 3499999999999999999999999988887 753
No 361
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=44.15 E-value=1e+02 Score=23.36 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhHHhH-----hCCChHHHHHHHHHhhhcCccceeeeccC---C-EEEEccCC
Q 018294 260 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKE-----LNVPEKDVEQLLVSLILDNRIDGHIDQVN---R-LLERGDRS 330 (358)
Q Consensus 260 ~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~-----l~l~~~~vE~~l~~lI~~g~i~akID~~~---g-~v~~~~~~ 330 (358)
....++.+......++.++. ....--.|.+. +++++.-+-..|.+|-.+|.|...-+..+ . +..+++..
T Consensus 12 ~~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~G 89 (123)
T 3ri2_A 12 SMVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEG 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHH
T ss_pred HHHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHH
Confidence 33445555555566666553 32333333333 58899999999999999999988764432 2 22233221
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh
Q 018294 331 KGMKKYTAIDKWNSQLRSLYQTVS 354 (358)
Q Consensus 331 ~~~~~~~~l~~w~~~i~~l~~~v~ 354 (358)
.+.+.+|......+...|.
T Consensus 90 -----r~~l~~~~~~~~~~~~~i~ 108 (123)
T 3ri2_A 90 -----LRVLREVEAQWHVLCDGVG 108 (123)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443
No 362
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=43.41 E-value=35 Score=22.42 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=31.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
.-++-.++|..||+|.+....-|-++.++|.+.-
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 5689999999999999999999999999999864
No 363
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=43.22 E-value=29 Score=24.57 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=26.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
+.-.+..+||+.+|+++.-|...+.++...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567899999999999999999999887653
No 364
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=43.03 E-value=29 Score=32.20 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 273 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 273 ~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
.+++++.....+|-.+||+.+|+|..-|-..+.+|+..|.|.
T Consensus 20 ~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 345566667889999999999999999999999999999884
No 365
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=42.96 E-value=45 Score=28.86 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=40.9
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCcc-chHHHHHHHHHHHHHH
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKG-MKKYTAIDKWNSQLRS 348 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~-~~~~~~l~~w~~~i~~ 348 (358)
..+++.+||+.+|+|..-+-..|.+|...|.+... ...+.+..+..... ......+..|...-..
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~ 230 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEE 230 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC-----------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHH
Confidence 56999999999999999999999999999999765 44567777643211 1123344456654443
No 366
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.82 E-value=37 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
+.-.+..+||+.+|+++.-|...+.++...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999998887654
No 367
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=42.39 E-value=2e+02 Score=31.87 Aligned_cols=83 Identities=16% Similarity=0.056 Sum_probs=46.6
Q ss_pred hhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChh
Q 018294 68 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 147 (358)
Q Consensus 68 ~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~ 147 (358)
..+|+.+++.|++++|.+.+..- ++ .+.|...+..+...|++..|-.+|..|++... +|.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA----------dD-------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~---e~~ 1168 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA----------DD-------PSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESY 1168 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc----------CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---ccc
Confidence 36777777777777777766321 11 12223345667777888888888887766431 222
Q ss_pred hhHHHhhhhhhhHhhhhcHHHHHHHHHH
Q 018294 148 IMGIIRECGGKMHMAERQWADAATDFFE 175 (358)
Q Consensus 148 ~~~~i~~~~g~~~~~~~~y~~A~~~f~e 175 (358)
+... -|..+...+++. +...|..
T Consensus 1169 Idt~----LafaYAKl~rle-ele~fI~ 1191 (1630)
T 1xi4_A 1169 VETE----LIFALAKTNRLA-ELEEFIN 1191 (1630)
T ss_pred ccHH----HHHHHHhhcCHH-HHHHHHh
Confidence 2111 244444456655 4556654
No 368
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=42.10 E-value=29 Score=27.97 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
.++..+||+.++++..-+-..|-+|...|.|.-.-|..++ .|.++.
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 134 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTP 134 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECH
Confidence 4999999999999999999999999999999766555444 455543
No 369
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=42.05 E-value=88 Score=26.12 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 274 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 274 l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
|..+.+.-..++..+||+.+|++..-+-..|.+|...|.+.-.- ++.|.+++.
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~ 63 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDL 63 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHH
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHH
Confidence 34455556789999999999999999999999999999886543 367777754
No 370
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.88 E-value=25 Score=29.34 Aligned_cols=47 Identities=9% Similarity=-0.095 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC---EEEEcc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGD 328 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g---~v~~~~ 328 (358)
..++..+||+.++++..-+-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 110 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTE 110 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECH
Confidence 46999999999999999999999999999999887776555 555553
No 371
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.28 E-value=62 Score=22.14 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=31.3
Q ss_pred cccchhhHHhHh-----CCChHHHHHHHHHhhhcCccce
Q 018294 282 TRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 282 ~~I~l~~la~~l-----~l~~~~vE~~l~~lI~~g~i~a 315 (358)
..++.++|++.+ +++..-|-..|-.|...|.|.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 469999999999 9999999999999999999863
No 372
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=41.20 E-value=34 Score=25.92 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=29.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
-.+..++|+.+|++...+..++..+...|.+..
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 357889999999999999999999999998854
No 373
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.11 E-value=40 Score=23.85 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.2
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
+.-.+..+||+.+|+++.-|...+.++..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56779999999999999999998888653
No 374
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=40.95 E-value=50 Score=27.65 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 262 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 262 ~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
.+.+++.|+...+..-+.|=.+++-..||+.||+|..-|-.-|..|-.+|.|.-+ +..|+.+.
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~ 80 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIR 80 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEe
Confidence 3567777877777777789899999999999999999999999999999998653 44566554
No 375
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=40.58 E-value=47 Score=28.37 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
..+.+.++......-..|-..+ +-..||+.+|+|..-|.+-+..|..+|.|..+ +..|+.+...
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 76 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccC
Confidence 4556666665555556777899 89999999999999999999999999998653 5556666543
No 376
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=40.36 E-value=55 Score=27.87 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
+.+++.|+...+..-++|=.+++-..||+.||+|..-|-.-|..|-.+|.|.-+ +..|+.+.
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 92 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE--LNRGVFVR 92 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEe
Confidence 556777777666667788899999999999999999999999999999998643 34455544
No 377
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=40.17 E-value=13 Score=28.43 Aligned_cols=51 Identities=18% Similarity=0.381 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcccccccchhhHHhHhCCC--hHHHHHHHHHhhhcCccceeeec
Q 018294 267 KNVRTQVLLKLIKPYTRIRIPFISKELNVP--EKDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 267 ~~i~~~~l~~~~~~y~~I~l~~la~~l~l~--~~~vE~~l~~lI~~g~i~akID~ 319 (358)
+..+...|.+++.|--+=.|.+|+=. -| ...||..|..|...|.|.++||.
T Consensus 36 ee~r~~iL~qiLtpeAreRL~rI~lV--KPEkA~~VE~~LI~lAq~Gqi~~kIte 88 (118)
T 2cru_A 36 AEMRNSILAQVLDQSARARLSNLALV--KPEKTKAVENYLIQMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHHHHHBCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHTCCCSCBCH
T ss_pred HHHHHHHHHHHcCHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 34556666777777555555554421 11 25799999999999999999874
No 378
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.14 E-value=36 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=25.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
...++++||+.+|+|..-|...+.+++..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRK 66 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 67899999999999999999998887643
No 379
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=40.11 E-value=33 Score=32.18 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 274 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 274 l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
+++++.....+|-.+||+.+|+|..-|-..+.+|+..|.|.
T Consensus 44 il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 44 VYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44555556789999999999999999999999999999884
No 380
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=39.96 E-value=57 Score=25.27 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=36.8
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
+...++..+||+.++++..-+-..|-+|...|.|.=.-|..++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR 91 (147)
T 4b8x_A 48 KSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGR 91 (147)
T ss_dssp GGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCc
Confidence 44569999999999999999999999999999998888877663
No 381
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=39.63 E-value=87 Score=23.04 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=33.8
Q ss_pred ccccchhhHHhHhC----CChHHHHHHHHHhhhcCccceeee
Q 018294 281 YTRIRIPFISKELN----VPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 281 y~~I~l~~la~~l~----l~~~~vE~~l~~lI~~g~i~akID 318 (358)
...++..+||+.++ ++..-+-..|-+|...|.|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 35699999999999 789999999999999999976655
No 382
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=39.52 E-value=35 Score=23.73 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=26.1
Q ss_pred HhcccccccchhhHHhHhC-----------CChHHHHHHHHHhhhcCccc
Q 018294 276 KLIKPYTRIRIPFISKELN-----------VPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 276 ~~~~~y~~I~l~~la~~l~-----------l~~~~vE~~l~~lI~~g~i~ 314 (358)
-+...+.++++++|...++ ++.++++..|.+++.+|++.
T Consensus 15 GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 15 GMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp HHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 3333445566666654442 35588999999999999875
No 383
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=39.40 E-value=43 Score=27.96 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
+..++.|+...+..-..|=.+++-..||+.||+|..-|-.-|..|-.+|.+.-+ +..|+.+.
T Consensus 15 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 76 (218)
T 3sxy_A 15 TKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVT 76 (218)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEc
Confidence 456677777666667788899999999999999999999999999999999654 44565554
No 384
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=38.94 E-value=58 Score=27.90 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
..+.+.++......-..|=..+ +...||+.||+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 76 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeC
Confidence 4556666665555556777889 89999999999999999999999999998643 455766543
No 385
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.69 E-value=87 Score=22.11 Aligned_cols=62 Identities=5% Similarity=-0.075 Sum_probs=42.7
Q ss_pred hhHHHHhhhch---HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc
Q 018294 69 KLCKIWFDMGE---YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 142 (358)
Q Consensus 69 ~la~~~~~~g~---~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~ 142 (358)
.+|..++-.++ .++|..++++....-.+ ...........++..|++.+|..++.+.......
T Consensus 11 ~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 11 AKATTLYYLHKQAMTDEVSLLLEQALQLEPY------------NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46666653433 68899999888887221 2233334467788999999999999998765443
No 386
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=38.62 E-value=25 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.9
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHH
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVS 306 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~ 306 (358)
|-+.+++.||+.+|+++++||..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998765
No 387
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.25 E-value=1.8e+02 Score=24.36 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHH---hhhhhhHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHH
Q 018294 45 EFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 121 (358)
Q Consensus 45 ~~~~~~~~~i~~---~~~~r~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 121 (358)
.+++.|...... ..++-.++|+-+++|+++ .+++..++.+++.-+...-- +..+..+|..-+.++-
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I----------G~~~AlfYe~wA~~lE 126 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI----------GTKLSLFYEEFSKLLE 126 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS----------STTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC----------cHHHHHHHHHHHHHHH
Confidence 455555554332 224445666666666665 33445677888888877632 2345666667777888
Q ss_pred HhcCHHHHHHHHHHHHh
Q 018294 122 ETKNNKKLKQLYQKALA 138 (358)
Q Consensus 122 ~~~d~~~a~~~l~~a~~ 138 (358)
..|++.+|..+|..+..
T Consensus 127 ~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 127 NAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 89999999999998865
No 388
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=38.01 E-value=59 Score=28.43 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 262 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 262 ~~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
...+.+.++......-..|=..+ +-..||+.+|+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 95 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR--SGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CC--EEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCceEEEec
Confidence 34566666665555566777899 89999999999999999999999999998532 334555443
No 389
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=37.84 E-value=43 Score=27.78 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcC
Q 018294 266 LKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 311 (358)
Q Consensus 266 ~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g 311 (358)
.+.=|...|+++++....++.++||+.||+|++-+..-+..|=..+
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3455777788888888899999999999999988888777765544
No 390
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=37.40 E-value=99 Score=28.43 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=45.5
Q ss_pred HhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 65 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 65 ~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
.+...++..+++.|++.+|...+..+...-+- .| +++...|+.+...|+...|...|....+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~----~E--------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY----RE--------PLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CH--------HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34447888888899999988888777554211 11 25566778888899999999998887664
No 391
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=36.66 E-value=47 Score=27.96 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=36.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 331 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 331 (358)
.++-.+||..+|++.+-+-..+.+|..+|.|. ...|.|.+.+++.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~~ 237 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPVT 237 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC---
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHHH
Confidence 57889999999999999999999999998875 3467788776654
No 392
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=36.61 E-value=1e+02 Score=21.22 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=29.5
Q ss_pred hHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccC
Q 018294 62 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 97 (358)
Q Consensus 62 ~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~ 97 (358)
-||--...+|+-+...|++++|...+......|..+
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 455556789999999999999999888888888654
No 393
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=36.27 E-value=62 Score=27.28 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
+.+++.|+...+..-.+|=.++ +-..||+.||+|-.-|-.-|..|..+|.|.-+ +..|+.+.
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~--~g~G~~V~ 72 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ--HGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--cCCCcEee
Confidence 4566667666555666788999 79999999999999999999999999998643 44566554
No 394
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=35.98 E-value=62 Score=23.22 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=32.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCcccee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 316 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ak 316 (358)
.-|+..+||+.++++...+-..|-+|...|.|.-.
T Consensus 35 ~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp TCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 47999999999999999999999999999999843
No 395
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=35.20 E-value=24 Score=20.98 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=22.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhh
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLI 308 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI 308 (358)
.-.+...||+.+|++..-|..++.+.-
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 457899999999999999998886543
No 396
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=35.05 E-value=1.1e+02 Score=29.86 Aligned_cols=78 Identities=10% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHH
Q 018294 226 MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 305 (358)
Q Consensus 226 l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~ 305 (358)
+++-.+.|+. .|+++...+..--..||.|...+..-......-++..+.+-|.. .-..-.+-+..+++++|..|.
T Consensus 486 iKe~fk~FN~----~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~-~~k~~~KyiKytpe~le~~l~ 560 (564)
T 2b1e_A 486 IKEKFRKFNE----GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD-SFKNPRKHIKYTPDELTTVLN 560 (564)
T ss_dssp HHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GSSSGGGTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcccCCHHHHHHHHH
Confidence 4454455543 45565555443334699887544444444444455555555655 224456677889999999998
Q ss_pred Hhh
Q 018294 306 SLI 308 (358)
Q Consensus 306 ~lI 308 (358)
++.
T Consensus 561 ~L~ 563 (564)
T 2b1e_A 561 QLV 563 (564)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 397
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=34.92 E-value=35 Score=22.35 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=24.8
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
+...+..+||+.+|+|+.-|...+.++..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999999999999988887653
No 398
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=34.90 E-value=1.5e+02 Score=29.47 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=46.0
Q ss_pred HHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc------CC
Q 018294 71 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA------IP 144 (358)
Q Consensus 71 a~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~------~~ 144 (358)
..+.+..|++++|.++...+ ++ ...|+ ...++++..+|+..|..+|.++...... ..
T Consensus 659 f~~~l~~~~~~~A~~~~~~~----------~~----~~~W~---~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~ 721 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE----------SA----EMKWR---ALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN 721 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC----------CC----HHHHH---HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred eehhhhcCCHHHHHHHHHhh----------Cc----HhHHH---HHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC
Confidence 34556778888888765322 11 22333 3445677788888888888876432110 11
Q ss_pred ChhhhHHHhhhhhhhHhhhhcHHHHHHHHHH
Q 018294 145 HPRIMGIIRECGGKMHMAERQWADAATDFFE 175 (358)
Q Consensus 145 ~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e 175 (358)
++.... ..+.+....++|..|...|+.
T Consensus 722 ~~~~~~----~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 722 NKEGLV----TLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp CHHHHH----HHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHH----HHHHHHHHcCchHHHHHHHHH
Confidence 111111 124455566777777666554
No 399
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=34.83 E-value=12 Score=34.70 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 274 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 274 l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
+++++. ...+|-.+||+.+|+|..-|-..+.+|+..|.|.
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 456666 7889999999999999999999999999999985
No 400
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=34.65 E-value=1.3e+02 Score=23.14 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=29.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCE
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 323 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~ 323 (358)
..++..+||+.++++..-+=..|-+|...|.|. +.|..++-
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR 91 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADAR 91 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC---------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCC
Confidence 469999999999999999999999999999994 45655553
No 401
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=34.31 E-value=22 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcCccceeeec
Q 018294 298 KDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 298 ~~vE~~l~~lI~~g~i~akID~ 319 (358)
+.||..|..|...|.|.++||.
T Consensus 37 ~~VE~~Li~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLIQLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 4799999999999999999874
No 402
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.77 E-value=55 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILD 310 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~ 310 (358)
.-.+..+||+.+|+++.-|+..+.++...
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66789999999999999999999987643
No 403
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.49 E-value=50 Score=26.68 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=34.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
.++-.+||..+|++.+-+-..+.++-.+|.|. ...|.|.+.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 205 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVFG 205 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEEe
Confidence 57889999999999999999999999998874 2345555543
No 404
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=32.90 E-value=36 Score=24.70 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHH
Q 018294 272 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 305 (358)
Q Consensus 272 ~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~ 305 (358)
..|..++.... +++.++|+.+|+|..-|-..|.
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 34445554433 8999999999999887776653
No 405
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=32.88 E-value=86 Score=26.68 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 264 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 264 ~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
.+.+.++......-..|=..+ +-..||+.+|+|..-|.+-+..|..+|.|.. -+..|+.+.
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~ 70 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVR 70 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEe
Confidence 455556555545566777899 8999999999999999999999999999864 255566554
No 406
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=32.63 E-value=40 Score=27.62 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=37.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
.++-.+||..+|++.+-+-..+.+|-.+|.|. ...|.|.+.+++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~~ 212 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILDSK 212 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCHH
Confidence 67889999999999999999999999998874 346777776553
No 407
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=32.06 E-value=1.6e+02 Score=24.47 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=34.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
...+..+||+.+|++..-+-..|..|...|.|...-+
T Consensus 27 ~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 27 RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 5689999999999999999999999999999988766
No 408
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=31.96 E-value=1.5e+02 Score=21.60 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=28.3
Q ss_pred hHHhHhCCChHHHHHHHHHhhhcCccceeeeccCC
Q 018294 288 FISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 322 (358)
Q Consensus 288 ~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g 322 (358)
.|++.++++..-+-..|.+|..+|.|...-+..+|
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~ 65 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQG 65 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETT
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCC
Confidence 34445789999999999999999999887765444
No 409
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.85 E-value=52 Score=27.03 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=37.5
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCc
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSK 331 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 331 (358)
-.++-.+||..+|++.+-+-..+.++-.+|.|. ...|.|.+.+++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~~ 222 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDRER 222 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCSTT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCHHH
Confidence 357889999999999999999999999998874 3456677766543
No 410
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.52 E-value=42 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
...++.+||+.+|+|+.-|...+.+++.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988764
No 411
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=31.42 E-value=14 Score=29.59 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=35.3
Q ss_pred hcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 277 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 277 ~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
.+.|-.+++...||+.+|+|..-+-.-+.+|...|.|.+
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 556778899999999999999999999999999999975
No 412
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.41 E-value=53 Score=26.61 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
.++-.+||..+|++.+-+-..+.++-.+|.|. ...|.|.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 208 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVYG 208 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEEe
Confidence 57889999999999999999999999998775 2345555543
No 413
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=31.40 E-value=1.8e+02 Score=22.36 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=36.0
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
..++...||+.+|++..-|-..|.+|...|.|.-+ .++.+.+++.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~ 97 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI---PWRGVFLTAE 97 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE---TTTEEEECHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe---cCCceEEChh
Confidence 45789999999999999999999999999877543 2355666643
No 414
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=31.15 E-value=24 Score=25.00 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhcCccceeeec
Q 018294 298 KDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 298 ~~vE~~l~~lI~~g~i~akID~ 319 (358)
..||..|.+|...|.|.++||.
T Consensus 35 ~~VE~~Li~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLKKLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHHHHHHTCCSCCBCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5799999999999999998874
No 415
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=30.90 E-value=97 Score=26.13 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhccccccc-chhhHHhHhCCChHHHHHHHHHhhhcCccce--eeeccCCEEEEc
Q 018294 263 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERG 327 (358)
Q Consensus 263 ~~L~~~i~~~~l~~~~~~y~~I-~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a--kID~~~g~v~~~ 327 (358)
+.+++.|+...+..-.+|=.++ +-..||+.||+|-.-|-.-|..|-.+|.+.- +-....|+.+..
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 5567777777666677888899 5779999999999999999999999999865 322225666654
No 416
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.73 E-value=2.1e+02 Score=22.99 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHH---hhhhhhHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHH
Q 018294 43 LREFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 119 (358)
Q Consensus 43 ~~~~~~~~~~~i~~---~~~~r~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 119 (358)
+..+++.|...... ..|+-.++|+=+++|++. +++.+++.-+...-- +..+..+|..-+.+
T Consensus 42 L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~I----------G~~~AlfY~~wA~~ 105 (164)
T 2wvi_A 42 MSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGI----------GVSLAQFYISWAEE 105 (164)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTS----------STTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCc----------chhhHHHHHHHHHH
Confidence 45566666665432 224445666666666653 335566666665522 24456677777778
Q ss_pred HHHhcCHHHHHHHHHHHHhh
Q 018294 120 YTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 120 ~~~~~d~~~a~~~l~~a~~~ 139 (358)
+-..|++.+|..+|..+..-
T Consensus 106 lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 106 YEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 88899999999999998763
No 417
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=30.35 E-value=1.5e+02 Score=21.17 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=12.6
Q ss_pred HHHHhhhchHhHHHHHH
Q 018294 71 CKIWFDMGEYGRMSKIL 87 (358)
Q Consensus 71 a~~~~~~g~~~~a~~~l 87 (358)
|+.+++.||+..|...+
T Consensus 46 a~~fl~kGD~v~Ala~i 62 (87)
T 2pmr_A 46 SVYYLEKGDHITSFGCI 62 (87)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 67788888888776544
No 418
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=29.65 E-value=2.1e+02 Score=22.71 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=37.9
Q ss_pred hhHHHHhhhch----------HhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHh-----------cCHH
Q 018294 69 KLCKIWFDMGE----------YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----------KNNK 127 (358)
Q Consensus 69 ~la~~~~~~g~----------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----------~d~~ 127 (358)
.+|..+.+.|+ +++|...+++....-++ ..+.+...-..|..+ |++.
T Consensus 41 n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~ 108 (158)
T 1zu2_A 41 RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------------KDEAVWCIGNAYTSFAFLTPDETEAKHNFD 108 (158)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------------cHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence 45555555554 45888888877776321 233333444455544 5899
Q ss_pred HHHHHHHHHHhhh
Q 018294 128 KLKQLYQKALAIK 140 (358)
Q Consensus 128 ~a~~~l~~a~~~~ 140 (358)
+|..++++|..+.
T Consensus 109 eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 109 LATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
No 419
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.62 E-value=69 Score=26.60 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=36.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
-.++-.+||..+|++.+-+-..+.++..+|.|. ...|.|.+.+++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~----~~~~~i~I~d~~ 229 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE----LHRKEILIPDAQ 229 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE----EETTEEEESCGG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE----ecCCEEEEeChH
Confidence 357899999999999999999999999999874 235667766543
No 420
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.55 E-value=1.7e+02 Score=21.92 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=42.7
Q ss_pred hhhhHHHHhh----hchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Q 018294 67 NLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALA 138 (358)
Q Consensus 67 ~~~la~~~~~----~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~d~~~a~~~l~~a~~ 138 (358)
...||.+|.. .+|+++|.++++..-.. |. .+.+.....+|.. .+|+.+|..++.++..
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----ND---------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----CC---------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4579999988 78999999999887654 11 1122334456666 7899999999998865
Q ss_pred h
Q 018294 139 I 139 (358)
Q Consensus 139 ~ 139 (358)
.
T Consensus 126 ~ 126 (138)
T 1klx_A 126 L 126 (138)
T ss_dssp T
T ss_pred C
Confidence 3
No 421
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=29.43 E-value=65 Score=28.95 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=36.0
Q ss_pred HHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 271 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 271 ~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
...|+.++..-..++.++||+.||+|..-+.+.|..|-..|.+-
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 33455566556679999999999999999999999998888763
No 422
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=29.35 E-value=1.1e+02 Score=22.52 Aligned_cols=46 Identities=7% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHH
Q 018294 226 MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQ 272 (358)
Q Consensus 226 l~~L~~af~~~d~~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~ 272 (358)
+.++-..|. .|-......+++.+..+..|+.|...++.|..++...
T Consensus 53 l~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 53 LPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 446667787 8888888888888888889999999999888887643
No 423
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=28.94 E-value=88 Score=27.86 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=35.0
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeecc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 320 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~ 320 (358)
...++.++||+.||+|..-|-+.|..+-..|.+.=+|..+
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 3679999999999999999999999999999997555443
No 424
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.58 E-value=60 Score=25.00 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=25.9
Q ss_pred cccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 280 PYTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 280 ~y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
.+.-.+..+||+.+|+|+.-|...+.++..
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457789999999999999999998887653
No 425
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=28.04 E-value=2.5e+02 Score=25.58 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=33.2
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
.++.+.+++.+|+|..-+...|.+|...|.|.- +....+.+.+
T Consensus 311 ~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~-~~~gR~~~y~ 353 (373)
T 2qc0_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE-VQSGKEKLFV 353 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE-C--CCSCEEE
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE-ecCCCceEEe
Confidence 367778999999999999999999999999963 3334444444
No 426
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=27.94 E-value=67 Score=30.57 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Q 018294 114 AIEIQMYTETKNNKKLKQLYQKA 136 (358)
Q Consensus 114 ~~~~~~~~~~~d~~~a~~~l~~a 136 (358)
...+..+..+|++..|-+.+.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc
Confidence 34455566778888877777776
No 427
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.94 E-value=46 Score=22.91 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=24.2
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhh
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLI 308 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI 308 (358)
+.-.+..||+.+|++.+.|..|..++=
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 566799999999999999999999865
No 428
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=27.65 E-value=2.8e+02 Score=25.36 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=33.7
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEE
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 326 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~ 326 (358)
.++.+.+++.+|++..-+...|.+|+..|.|. ++....+.+.+
T Consensus 311 ~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~-~~~~gR~~~y~ 353 (373)
T 3eqx_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLE-EVQSGKEKLFV 353 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE-EC--CCSCEEE
T ss_pred CccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE-EeCCCCceEee
Confidence 47889999999999999999999999999985 33434444444
No 429
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=26.91 E-value=3.4e+02 Score=24.16 Aligned_cols=60 Identities=10% Similarity=-0.075 Sum_probs=40.3
Q ss_pred HHHHHHHh-----cCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhh-hhcHHHHHHHHHHHhhhh
Q 018294 116 EIQMYTET-----KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA-ERQWADAATDFFEAFKNY 180 (358)
Q Consensus 116 ~~~~~~~~-----~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~-~~~y~~A~~~f~e~~~~~ 180 (358)
...+|... ||..+|+.+++++..++..- .+. .....|..++. .+++..|..++-.+....
T Consensus 205 LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~---~id--~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 205 LTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH---DPD--HHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT---CSH--HHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC---Cch--HHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 33556663 99999999999999885421 011 22333565555 589999888888876543
No 430
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=26.62 E-value=1.2e+02 Score=27.92 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccCCChhhhHHHhhhhhhhHhhhhcHHHHHHHHHHHhh
Q 018294 111 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 178 (358)
Q Consensus 111 e~~~~~~~~~~~~~d~~~a~~~l~~a~~~~~~~~~~~~~~~i~~~~g~~~~~~~~y~~A~~~f~e~~~ 178 (358)
.++......++..|++..|...+++|...++... .....|.++...|++.+|...|..++.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~-------a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-------NYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHh
No 431
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.58 E-value=69 Score=23.29 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
.-.+..+||+.+|+++.-|...+.++..
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5668899999999999999999888654
No 432
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=26.52 E-value=54 Score=19.94 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=20.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHh
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSL 307 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~l 307 (358)
.+++..+|+.+|++.+++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678899999999999877777653
No 433
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.42 E-value=67 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHH
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVS 306 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~ 306 (358)
+.-....||+.+|+++..|+-|.-+
T Consensus 27 ~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 27 DEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp CHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445889999999999999988644
No 434
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=25.93 E-value=42 Score=26.69 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=30.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccce-eeeccCCEEEE
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG-HIDQVNRLLER 326 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a-kID~~~g~v~~ 326 (358)
.-+++.++|+.||++...|- ++|.+|+|.| |++ +...+
T Consensus 30 ~~LTv~EVAe~LgVs~srV~----~LIr~G~L~AVr~G---r~~rV 68 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVA----QQLREGHLVAVRRA---GGVVI 68 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSCCCEEET---TEEEE
T ss_pred ceEcHHHHHHHhCCCHHHHH----HHHHCCCceEEEEC---CEEEe
Confidence 46799999999999998877 6789999987 664 55444
No 435
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=25.86 E-value=86 Score=28.88 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHh-----cccccccchhhHHhHhCCChHHHHHHHHHhhhcCccceeee
Q 018294 259 RNYIEDLLKNVRTQVLLKL-----IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 259 ~~~~~~L~~~i~~~~l~~~-----~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID 318 (358)
+.+...+...+|...+-+= -++|.+.+...+|+.+|++...++..+.+|-..|...++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3ez9_A 14 ALRASALLKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQ 78 (403)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 3444555555665554422 25678999999999999999999999999888888877633
No 436
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=25.54 E-value=50 Score=26.87 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=37.7
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
..++-.+||..+|++.+-+-..+.++-.+|.|. ...|.|.+.+++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 206 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREAA 206 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCHH
Confidence 467899999999999999999999999998884 345777776553
No 437
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=25.39 E-value=2.2e+02 Score=22.51 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=37.3
Q ss_pred cchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHH
Q 018294 284 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK 341 (358)
Q Consensus 284 I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~ 341 (358)
+.|.+||+.++=+++-+-+.+..=. --.|.|| +|.+.+...=+.+...+.|..
T Consensus 47 ~Nf~dIa~~L~R~p~hv~ky~~~EL---Gt~g~id--~~rlii~G~~~~~~i~~~L~~ 99 (148)
T 2d74_B 47 ENFKDIADALNRDPQHLLKFLLREI---ATAGTLE--GRRVVLQGRFTPYLIANKLKK 99 (148)
T ss_dssp SCHHHHHHHHTCCSHHHHHHHHHHS---CCCEEEE--TTEEEESSCCCHHHHHHHHHH
T ss_pred EcHHHHHHHHCCCHHHHHHHHHHHh---CCceeec--CCEEEEEeeeCHHHHHHHHHH
Confidence 4799999999999998887776522 2358999 888888766544334444443
No 438
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=25.19 E-value=1.3e+02 Score=19.77 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=34.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHHHHHH
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 345 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~w~~~ 345 (358)
.-+++.++|+.+|++..-+-. ++..|.+...|--..+.+ +. ...+..|..+
T Consensus 9 ~~l~~~eva~~lgvsrstiy~----~~~~g~fP~piklG~~~~-w~--------~~ev~~Wl~~ 59 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYD----RIKSGDLPKAKVIHGRAR-WL--------YRDHCEFKNK 59 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHH----HHHHHHCCCSEESSSCEE-EE--------HHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHH----HHHCCCCCCCEEeCCCeE-Ee--------HHHHHHHHHH
Confidence 458999999999999887775 455687765443344443 22 3567778764
No 439
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=24.72 E-value=55 Score=26.47 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=36.3
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
.++-.+||..+|++.+-+-..+.++-.+|.|. ...|.|.+.++
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 188 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLDL 188 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 47889999999999999999999999999875 33577777654
No 440
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.64 E-value=56 Score=27.02 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=36.0
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
.++-.+||..+|++.+-+-..+.+|-.+|.|. ...|.|.+.++
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 217 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLDL 217 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESCH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeCH
Confidence 57899999999999999999999999998874 33566777654
No 441
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.42 E-value=57 Score=25.57 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=27.0
Q ss_pred ccccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 279 KPYTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 279 ~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
..+.-.+..+||+.+|+|+.-|...+.++..
T Consensus 105 ~~~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 105 TAMEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp TSSSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4467899999999999999999999988753
No 442
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=24.37 E-value=48 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=35.9
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
.++-.+||..+|++.+-+-..+.++..+|.|. ...|.|.+.++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 47889999999999999999999999998874 33567777654
No 443
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=24.12 E-value=97 Score=25.33 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=30.1
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccce
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 315 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~a 315 (358)
..++.+||+.+|++..-+-..|..|-..|.|.-
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 489999999999998899999999999999854
No 444
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=2.8e+02 Score=22.15 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=38.2
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccCCccchHHHHHHH
Q 018294 285 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDK 341 (358)
Q Consensus 285 ~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~l~~ 341 (358)
.|.+||+.|+-+++-+-+++..=.. ..|.||..++.+.+...=+.....+.|..
T Consensus 45 Nf~dIak~L~R~p~hv~ky~~~ELG---t~g~id~~~~rlii~G~~~~~~i~~~L~~ 98 (157)
T 2e9h_A 45 NMVDVAKALNRPPTYPTKYFGCELG---AQTQFDVKNDRYIVNGSHEANKLQDMLDG 98 (157)
T ss_dssp THHHHHHHTTSCTHHHHHHHHHHHT---CCEEEETTTTEEEEEBCCCHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHhC---CceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 6999999999999988877765332 35899988888888765443333344433
No 445
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=23.99 E-value=59 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.4
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
.++-.+||..+|++.+-+-..+.++..+|.|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999998874
No 446
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.98 E-value=3.3e+02 Score=23.05 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=40.2
Q ss_pred hHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 018294 62 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 138 (358)
Q Consensus 62 ~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~ 138 (358)
.++|+-+++|++ .+++.+++.-+...-- +..+..+|..-+.++-..|++.+|..+|..+..
T Consensus 118 RyLklWl~Ya~~------~~~p~~if~~L~~~~I----------G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 118 RYLRIWMQYVNY------IDEPVELFSFLAHHHI----------GQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHHTT------CSCHHHHHHHHHHTTC----------STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------cCCHHHHHHHHHHCCc----------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555553 1355566666665522 234566666777788889999999999998865
No 447
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=23.94 E-value=58 Score=26.83 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=36.3
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
.++-.+||..+|++.+-+-..+.++..+|.|. ...|.|.+.++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 219 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR----LEGKSVLISDS 219 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ecCCEEEEcCH
Confidence 57889999999999999999999999998774 34577777654
No 448
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=23.87 E-value=70 Score=31.51 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhh
Q 018294 269 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLIL 309 (358)
Q Consensus 269 i~~~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~ 309 (358)
..++.++.++.....|+-.++|+.+|++...+...|.+|..
T Consensus 430 ~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~ 470 (583)
T 3lmm_A 430 YRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQ 470 (583)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 34556677777777899999999999999999999999998
No 449
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=23.84 E-value=59 Score=26.89 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=36.6
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEccC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 329 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~ 329 (358)
-.++-.+||..+|++.+-+-..+.++-.+|.|. ...|.|.+.++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 222 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIIDC 222 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeCH
Confidence 467899999999999999999999999998774 33567777654
No 450
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.24 E-value=1.2e+02 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHhhhhhHHHHhhhchHhHHHHHHHHHHHhccc
Q 018294 63 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 96 (358)
Q Consensus 63 ~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~ 96 (358)
||--.+.+|+-+...|+++.|..++......|..
T Consensus 19 ~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 19 FFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4444577999999999999999977777777754
No 451
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=23.11 E-value=60 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=34.3
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
.++-.+||..+|++.+-+-..+.+|-.+|.|. ...|.|.+.+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH----ARGKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ECCCEEEEee
Confidence 47889999999999999999999999998874 2345565544
No 452
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=23.11 E-value=61 Score=26.54 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=35.8
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHhhhcCccceeeecc-CCEEEEccC
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV-NRLLERGDR 329 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~-~g~v~~~~~ 329 (358)
-.++-.+||..+|++.+-+-..+.++..+|.| ... .|.|.+.++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d~ 210 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKDL 210 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESCH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcCH
Confidence 36788999999999999999999999998876 343 566777554
No 453
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=22.58 E-value=2e+02 Score=28.45 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=10.1
Q ss_pred hhHHHHhhhchHhHHHHH
Q 018294 69 KLCKIWFDMGEYGRMSKI 86 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~ 86 (358)
.++.++...|.+++|..+
T Consensus 634 ~~~~~l~~~~~~~~a~~~ 651 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNI 651 (814)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCChHHheec
Confidence 455555566666665543
No 454
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=22.39 E-value=2e+02 Score=19.99 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=39.4
Q ss_pred hcccccccchhhHHhHhCC-ChHHHHHHHHHhhhcCccceeeeccCCEEEEcc
Q 018294 277 LIKPYTRIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 328 (358)
Q Consensus 277 ~~~~y~~I~l~~la~~l~l-~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~~ 328 (358)
++......++.+|++..|+ +.+++-.-|.=+-.+++| .+++.+|.+.+.-
T Consensus 18 ~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI--~~~~~~~~l~v~l 68 (77)
T 2l01_A 18 ALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKV--VTSEVEGEIFVKL 68 (77)
T ss_dssp HHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCE--EEEEETTEEEEEE
T ss_pred HHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCce--EEEeeCCEEEEEe
Confidence 3333468999999999999 999988877777778877 4677788877753
No 455
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=22.34 E-value=18 Score=35.72 Aligned_cols=43 Identities=7% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHhcccccccchhhHHhHhCCChHHHHHHHHHhhhcCccc
Q 018294 272 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 314 (358)
Q Consensus 272 ~~l~~~~~~y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ 314 (358)
..++.+++.+..|+-.++++.+|++...+...|.+|+..|.|.
T Consensus 519 ~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~ 561 (583)
T 3lmm_A 519 NAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVV 561 (583)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 3456777888899999999999999999999999999999884
No 456
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=22.33 E-value=97 Score=26.44 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.5
Q ss_pred ccchhhHHhHhCCChHHHHHHHHHhhhcCcccee
Q 018294 283 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 316 (358)
Q Consensus 283 ~I~l~~la~~l~l~~~~vE~~l~~lI~~g~i~ak 316 (358)
.+++.+||+.+|+|..-+-.+|..|...|.+.-.
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 5999999999999999999999999999998653
No 457
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.12 E-value=1.3e+02 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=21.4
Q ss_pred cccchhhHHhHhCCChHHHHHHHHHh
Q 018294 282 TRIRIPFISKELNVPEKDVEQLLVSL 307 (358)
Q Consensus 282 ~~I~l~~la~~l~l~~~~vE~~l~~l 307 (358)
..+++++||+.+|+++..+....-+.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56999999999999988877766653
No 458
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=22.12 E-value=1e+02 Score=20.91 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=32.7
Q ss_pred ccccchhhHHhHhC----CChHHHHHHHHHhhhcCccceeee
Q 018294 281 YTRIRIPFISKELN----VPEKDVEQLLVSLILDNRIDGHID 318 (358)
Q Consensus 281 y~~I~l~~la~~l~----l~~~~vE~~l~~lI~~g~i~akID 318 (358)
...++..+|++.++ ++..-|-..|-+|...|.|.-.-|
T Consensus 21 ~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 21 HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 45799999999997 788999999999999999975543
No 459
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=21.73 E-value=83 Score=29.10 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=28.4
Q ss_pred ccccchhhHHhHhCCChHHHHHHHHHhhhcCc
Q 018294 281 YTRIRIPFISKELNVPEKDVEQLLVSLILDNR 312 (358)
Q Consensus 281 y~~I~l~~la~~l~l~~~~vE~~l~~lI~~g~ 312 (358)
...+++++|++.+|++.+++...|..++..++
T Consensus 213 ~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k 244 (382)
T 3dpl_C 213 REKISFENLKLATELPDAELRRTLWSLVAFPK 244 (382)
T ss_dssp TCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTT
T ss_pred CCcCcHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999887544
No 460
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=21.44 E-value=69 Score=21.66 Aligned_cols=27 Identities=0% Similarity=0.154 Sum_probs=23.1
Q ss_pred cc-cccchhhHHhHhCCChHHHHHHHHH
Q 018294 280 PY-TRIRIPFISKELNVPEKDVEQLLVS 306 (358)
Q Consensus 280 ~y-~~I~l~~la~~l~l~~~~vE~~l~~ 306 (358)
+| +.-....||..+|+|..+|..|-.+
T Consensus 27 ~YPs~~er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 27 QFPDDAEVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp GSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHhhHhccc
Confidence 45 6778899999999999999988765
No 461
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=21.37 E-value=2.4e+02 Score=20.38 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=23.2
Q ss_pred hHHHHhhhchHhHHHHHHHHHHHhcccC
Q 018294 70 LCKIWFDMGEYGRMSKILKELHKSCQRE 97 (358)
Q Consensus 70 la~~~~~~g~~~~a~~~l~~l~~~~~~~ 97 (358)
-+++|+..+|.+...+.|..++..+..+
T Consensus 16 Asr~~f~~~n~~~m~~~L~pLh~~l~~~ 43 (94)
T 3fap_B 16 ASRLYFGERNVKGMFEVLEPLHAMMERG 43 (94)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 4567888889999999999999998753
No 462
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=21.32 E-value=1.7e+02 Score=18.64 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.9
Q ss_pred chhhHHhHhCCChHHHHHHHHHhhhcCccceeeeccCCEEEEc
Q 018294 285 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 327 (358)
Q Consensus 285 ~l~~la~~l~l~~~~vE~~l~~lI~~g~i~akID~~~g~v~~~ 327 (358)
.|.+||+.++=+++-+-+.+..=.. -.|.|| ++.+.+.
T Consensus 13 Nf~~Ia~~L~R~p~hv~ky~~~ELG---t~g~id--~~rlii~ 50 (52)
T 1k8b_A 13 NFRELAKAVNRDEEFFAKYLLKETG---SAGNLE--GGRLILQ 50 (52)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHS---SEEEEE--TTEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhC---CCeeec--CCEEEEe
Confidence 6899999999999988877764221 257888 6665553
No 463
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=21.26 E-value=1.2e+02 Score=25.17 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=36.3
Q ss_pred ccchhhHHhHhCCCh-HHHHHHHHHhhhcCccceeeeccCCEEEEccCC
Q 018294 283 RIRIPFISKELNVPE-KDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 330 (358)
Q Consensus 283 ~I~l~~la~~l~l~~-~~vE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 330 (358)
.++-.+||..+|++. +-+-..+.+|-.+|.|. ...|.|.+.+++
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~----~~~~~i~I~d~~ 213 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV----YKNSCFYVQNLD 213 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE----EETTEEEESCHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE----ecCCEEEEeCHH
Confidence 578899999999999 89999999999998764 336777776653
No 464
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=21.25 E-value=42 Score=25.50 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhcCccceeeec
Q 018294 298 KDVEQLLVSLILDNRIDGHIDQ 319 (358)
Q Consensus 298 ~~vE~~l~~lI~~g~i~akID~ 319 (358)
..||..|..|...|.|.++||.
T Consensus 70 ~~VE~~li~laq~Gql~~ki~e 91 (116)
T 2hvu_A 70 QAVETYLKKLIATNNVTHKITE 91 (116)
T ss_dssp HHHHHHHHHHHHHSCCSSCBCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 4789999999999999988874
No 465
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.94 E-value=2.4e+02 Score=26.84 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=45.3
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 138 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~ 138 (358)
-+...+...|++++|.+++.++...--.| + ...|...+..|.+.|++.+|..++.+-+.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d-------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVP----E-------EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC----C-------HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 56677889999999999999998763322 1 23445667888999999999999987554
No 466
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.20 E-value=2e+02 Score=27.28 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=54.3
Q ss_pred hhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 018294 69 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 69 ~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~~a~~~l~~a~~~ 139 (358)
.|-++|++.|+..-|..++..+.....-++ .+.....+.+.+....-|+++..+++.+|...+..|-.-
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~--~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAH--FNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSC--GGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcC--hhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 567999999999999999998887643111 122335788888888999999999999999999988554
No 467
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.13 E-value=3.3e+02 Score=21.53 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHH---hhhhhhHHHhhhhhHHHHhhhchHhHHHHHHHHHHHhcccCCCCcchhhhhhHHHHHHHHHHH
Q 018294 43 LREFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 119 (358)
Q Consensus 43 ~~~~~~~~~~~i~~---~~~~r~~~~~~~~la~~~~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 119 (358)
+..+++.|...... ..|+-.++|+=+++|++. +++.+++.-+...-- +..+..+|..-+.+
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~I----------G~~~AlfYe~wA~~ 110 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGI----------GTLSSPLYIAWAGH 110 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTT----------TTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCC----------cHHHHHHHHHHHHH
Confidence 55666666655432 224445666666666653 336667766665522 24456677777778
Q ss_pred HHHhcCHHHHHHHHHHHHhh
Q 018294 120 YTETKNNKKLKQLYQKALAI 139 (358)
Q Consensus 120 ~~~~~d~~~a~~~l~~a~~~ 139 (358)
+-..|++.+|..+|..+..-
T Consensus 111 lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 111 LEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 88899999999999998663
Done!