BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018295
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
pdb|2CDQ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
Length = 510
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/282 (80%), Positives = 252/282 (89%), Gaps = 1/282 (0%)
Query: 63 VIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK 122
V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGK
Sbjct: 10 VLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGK 68
Query: 123 TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKG 182
TTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I T+LEELEQLLKG
Sbjct: 69 TTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKG 128
Query: 183 IAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL 242
IAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IGFITTDDFTN DIL
Sbjct: 129 IAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDIL 188
Query: 243 EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302
EATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDLTATTIGKALGL+E
Sbjct: 189 EATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKE 248
Query: 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV 344
IQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQV
Sbjct: 249 IQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQV 290
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 169/276 (61%), Gaps = 21/276 (7%)
Query: 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCG 138
+T VMKFGG+S+ S ER+R VA+++ E +V+ SAM + TN L+ ++A+
Sbjct: 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD-- 58
Query: 139 VTNISCI-DELSFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELT 190
V +I+ + D + F+++ H++ ++E + II + +EELE++L G+A L ELT
Sbjct: 59 VRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELT 118
Query: 191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYPA 248
P+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A + LE
Sbjct: 119 PKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE----- 173
Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
V +RL + + IP+VTGF+G ITTLGRGGSD +A IG L I++W D
Sbjct: 174 VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTD 231
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV 344
V GV T DP + P A+ +P L++ EA ELAYFGA+V
Sbjct: 232 VSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKV 267
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 168/275 (61%), Gaps = 21/275 (7%)
Query: 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCGV 139
T VMKFGG+S+ S ER+R VA+++ E +V+ SAM + TN L+ ++A+ V
Sbjct: 1 TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD--V 58
Query: 140 TNISCI-DELSFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTP 191
+I+ + D + F+++ H++ ++E + II + +EELE++L G+A L ELTP
Sbjct: 59 RDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTP 118
Query: 192 RSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYPAV 249
+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A + LE V
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE-----V 173
Query: 250 AKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309
+RL + + IP+VTGF+G ITTLGRGGSD +A IG L I++W DV
Sbjct: 174 KERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDV 231
Query: 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV 344
GV T DP + P A+ +P L++ EA ELAYFGA+V
Sbjct: 232 SGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKV 266
>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Lysine And Aspartate (T-State)
pdb|2J0X|B Chain B, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Lysine And Aspartate (T-State)
pdb|2J0W|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Aspartate And Adp (R-State)
Length = 449
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 139/272 (51%), Gaps = 28/272 (10%)
Query: 83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ A++ G+
Sbjct: 5 VVSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPG 58
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYL 197
++L ++++ ++ L I EE+E+LL+ I +L E +P D L
Sbjct: 59 ERFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDEL 114
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD-----ILEATYPAVAKR 252
VS GE MST +F L + V+A+ +D + T D F A+ + E + R
Sbjct: 115 VSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPR 173
Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
L+ + I GF+G + TTLGRGGSD TA + +AL + +W DV G+
Sbjct: 174 LNEGLV------ITQGFIGSENK-GRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGI 226
Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV 344
T DP + AK + + F EAAE+A FGA+V
Sbjct: 227 YTTDPRVVSAAKRIDEIAFAEAAEMATFGAKV 258
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 60/271 (22%)
Query: 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
V K+GGSSL SAER+R VAE I++ V+V SAMG TT+
Sbjct: 4 VVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTD--------------- 48
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP-RSRDYLVS 199
+LL+ A + + P R D L++
Sbjct: 49 -------------------------------------ELLELAAAVNPVPPAREMDMLLT 71
Query: 200 FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT 259
GE +S + A + +G +A+ + G +TT+ NA I++ T V + L
Sbjct: 72 AGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALD----- 126
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+ I IV GF G T +TTLGRGGSD TA + AL +++ DVDGV T DP I
Sbjct: 127 EGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRI 186
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAV 350
P+A+ + L+F+E ELA G+++ + +V
Sbjct: 187 VPNAQKLEKLSFEEMLELAAVGSKILVLRSV 217
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 60/271 (22%)
Query: 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
V K+GGSSL SAER+R VAE I++ V+V SAMG TT+
Sbjct: 4 VVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTD--------------- 48
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP-RSRDYLVS 199
+LL+ A + + P R D L++
Sbjct: 49 -------------------------------------ELLELAAAVNPVPPAREMDMLLT 71
Query: 200 FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT 259
GE +S + A + +G +A+ + G +TT+ NA I++ T V + L
Sbjct: 72 AGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALD----- 126
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+ I IV GF G T +TTLGRGGSD TA + AL +++ DVDGV T DP I
Sbjct: 127 EGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRI 186
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAV 350
P+A+ + L+F+E ELA G+++ + +V
Sbjct: 187 VPNAQKLEKLSFEEMLELAAVGSKILVLRSV 217
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 126/273 (46%), Gaps = 33/273 (12%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
V KFGGSSLA + + ++V +I S N R I+ SA GK TNK LL V
Sbjct: 6 VTKFGGSSLADSNQFKKVKGIIDSDAN-RKYIIPSAPGKRTNKDYKITDLLYLCNAHVKN 64
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
G I D + + V EL ID I A +LE++++ ++ A S DY
Sbjct: 65 G---IPFDDVFKLISQRYTEIVSELNIDXDI-AYYLEKVKKNIENGA--------SSDYA 112
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
S GE ++ I A YLN A DA ++ F D + + +Y + ++
Sbjct: 113 ASRGEYLNGVILAKYLN-----AEFIDAAEVIFF---DKSGCFDEKKSYEKIKEK----- 159
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ ++ GF G ++ + T RGGSD+T + I + + W DV G L DP
Sbjct: 160 VLSCNKAVIPGFYGSSFNG-DVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLXADP 218
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAV 350
I + K + +++ E EL+Y GA V EA+
Sbjct: 219 RIVENPKTISKISYKELRELSYXGATVLHEEAI 251
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 116/272 (42%), Gaps = 59/272 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ + ER++ VA+ I V+V+SAMGK+T+ L+
Sbjct: 5 VQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLV------------- 51
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+L Q + +E+ D L+S G
Sbjct: 52 ---------------------------------DLAQQISPNPCRREM-----DMLLSTG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + + L +I A +G +T + + A ILE + L +
Sbjct: 74 EQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVV-- 131
Query: 262 AIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
+V GF G + ITTLGRGGSD +A + AL +++ DV G+LT DP +
Sbjct: 132 ---VVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLV 188
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVYIFEAVNV 352
P A+ + +T DE ELA GA+V AV +
Sbjct: 189 PEAQLMAEITCDEMLELASLGAKVLHPRAVEI 220
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 176 LEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235
+E+ ++G ++ + PR V GE R+ + KIG R++D D GF DD
Sbjct: 125 IEKAVRGEGVIADREPR----FVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDD 180
Query: 236 --FTNADIL 242
F +A+ L
Sbjct: 181 SIFEHAEKL 189
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 214 NKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273
+K+ V ++ DIG++ N +IL A + D+I +A P+ G G +
Sbjct: 125 SKLIVAEKETKHGDIGYVGKVKKVNPEILHAL-------IENDYIPVIA-PVGIGEDGHS 176
Query: 274 WRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333
+ A D A I K+L +++ + DVDGVL K + LT DE
Sbjct: 177 YNINA---------DTAAAEIAKSLMAEKLILLTDVDGVLK-------DGKLISTLTPDE 220
Query: 334 AAEL 337
A EL
Sbjct: 221 AEEL 224
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEA 334
+VDGV T DP P A +TFDEA
Sbjct: 164 NVDGVYTADPKKDPSATRYETITFDEA 190
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGG-------SDLTATTIGKALGLQEIQVWKDVDGVLT 314
A P+V +AW+ + + G +D A + + L + V +VDGV T
Sbjct: 90 AYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYT 149
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQ 343
DP P AK + + +E E+ G +
Sbjct: 150 ADPKKDPTAKKIKKMKPEELLEIVGKGIE 178
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGG-------SDLTATTIGKALGLQEIQVWKDVDGVLT 314
A P+V +AW+ + + G +D A + + L + V +VDGV T
Sbjct: 107 AYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYT 166
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQ 343
DP P AK + + +E E+ G +
Sbjct: 167 ADPKKDPTAKKIKKMKPEELLEIVGKGIE 195
>pdb|2FN6|A Chain A, Helicobacter Pylori Psec, Aminotransferase Involved In The
Biosynthesis Of Pseudoaminic Acid
pdb|2FN6|B Chain B, Helicobacter Pylori Psec, Aminotransferase Involved In The
Biosynthesis Of Pseudoaminic Acid
pdb|2FNI|A Chain A, Psec Aminotransferase Involved In Pseudoaminic Acid
Biosynthesis
pdb|2FNI|B Chain B, Psec Aminotransferase Involved In Pseudoaminic Acid
Biosynthesis
pdb|2FNU|A Chain A, Psec Aminotransferase With External Aldimine
pdb|2FNU|B Chain B, Psec Aminotransferase With External Aldimine
Length = 375
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 57 EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIV 116
+G R + E E LGV + + F ++ A R +E F +R I+
Sbjct: 30 QGKRSLLFEEALCEFLGVKHA-------LVFNSATSALLTLYRNFSE----FSADRNEII 78
Query: 117 LSAMG--KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLE 174
+ + T N LL +G V G+ N IDEL+ K ++ RT + +D + + +E
Sbjct: 79 TTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVE 138
Query: 175 ELEQLLK 181
+++L K
Sbjct: 139 SVQKLCK 145
>pdb|3HX6|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
pdb|3HX6|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
Length = 570
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHG--- 255
+F E TR Y +G FD T F + + E + A+ G
Sbjct: 76 TFAEAQKTRAPRVY---VGANDGMLHGFDTDGNETFAFIPSAVFEKMHKLTARGYQGGAH 132
Query: 256 DWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
+ D + + F G AW T I +L GG L A
Sbjct: 133 QFYVDGSPVVADAFFGGAWHTVLIGSLRAGGKGLFA 168
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 279 ITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
+ G G + AT + KALG + ++++ D+DG PN HP
Sbjct: 198 VVDAGNGVAGPLATRLFKALGCELVELFTDIDGNF---PNHHP 237
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 305 VWKDVDGVLTCDPNIHPHAKPVPYLT 330
V +VDGV DP I+ K +P+LT
Sbjct: 137 VATNVDGVYEKDPRIYADVKLIPHLT 162
>pdb|4GRS|A Chain A, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|B Chain B, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|C Chain C, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|D Chain D, Crystal Structure Of A Chimeric Dah7ps
Length = 333
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
+++ G + + E ++EV ++ E PV++ MG T +LL + E ++ G N+
Sbjct: 180 ILQIGARNSQNFELLKEVGKV------ENPVLLKRGMGNTIQELLYSAEYIMAQGNENV 232
>pdb|1ZCO|A Chain A, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
pdb|1ZCO|B Chain B, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
Length = 262
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
+++ G + + E ++EV ++ E PV++ MG T +LL + E ++ G N+
Sbjct: 109 ILQIGARNSQNFELLKEVGKV------ENPVLLKRGMGNTIQELLYSAEYIMAQGNENV 161
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGG-------SDLTATTIGKALGLQEIQVWKDVDGVLT 314
A P+V +AW+ + + G +D A + + L + V +VDGV T
Sbjct: 89 AYPVVVEDFWEAWKAVQLKKIPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYT 148
Query: 315 CDPNIHPHA 323
DP P A
Sbjct: 149 ADPKKDPTA 157
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGG-------SDLTATTIGKALGLQEIQVWKDVDGVLT 314
A P+V +AW+ + + G +D A + + L + V +VDGV T
Sbjct: 88 AYPVVVEDFWEAWKAVQLKKIPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYT 147
Query: 315 CDPNIHPHA 323
DP P A
Sbjct: 148 ADPKKDPTA 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,879,623
Number of Sequences: 62578
Number of extensions: 383810
Number of successful extensions: 1025
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 29
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)