Query 018295
Match_columns 358
No_of_seqs 215 out of 1815
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0456 Aspartate kinase [Amin 100.0 2E-72 4.4E-77 543.8 23.1 351 3-357 2-355 (559)
2 PLN02551 aspartokinase 100.0 5E-70 1.1E-74 561.1 31.1 315 43-357 14-328 (521)
3 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 1.8E-62 4E-67 472.1 30.3 262 82-357 1-269 (288)
4 COG0527 LysC Aspartokinases [A 100.0 6.5E-63 1.4E-67 499.6 27.3 262 81-357 2-269 (447)
5 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 3.9E-62 8.5E-67 470.6 30.5 269 82-357 1-273 (292)
6 cd04244 AAK_AK-LysC-like AAK_A 100.0 8.3E-62 1.8E-66 470.2 30.2 271 83-357 2-279 (298)
7 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 1.6E-61 3.4E-66 467.2 30.1 267 82-357 1-275 (294)
8 cd04243 AAK_AK-HSDH-like AAK_A 100.0 2.3E-61 4.9E-66 465.9 29.5 266 82-357 1-274 (293)
9 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 1E-60 2.2E-65 461.6 30.2 265 82-357 1-276 (295)
10 PRK09084 aspartate kinase III; 100.0 4.4E-60 9.6E-65 481.0 30.4 265 82-357 1-269 (448)
11 PRK09034 aspartate kinase; Rev 100.0 7.2E-60 1.6E-64 480.3 31.1 262 82-357 1-269 (454)
12 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 1.1E-59 2.3E-64 456.0 29.5 268 82-357 2-285 (306)
13 PRK06291 aspartate kinase; Pro 100.0 5.4E-58 1.2E-62 467.9 31.0 274 81-357 1-283 (465)
14 PRK09466 metL bifunctional asp 100.0 1.3E-57 2.8E-62 489.3 28.2 266 78-357 8-280 (810)
15 PRK05925 aspartate kinase; Pro 100.0 3.2E-56 7E-61 451.0 28.6 260 80-357 1-260 (440)
16 PRK08373 aspartate kinase; Val 100.0 1.8E-55 4E-60 431.8 28.2 254 81-355 4-259 (341)
17 PRK09181 aspartate kinase; Val 100.0 4.9E-55 1.1E-59 445.9 26.5 261 80-357 2-291 (475)
18 PRK09436 thrA bifunctional asp 100.0 7.5E-54 1.6E-58 462.1 29.4 266 82-357 1-277 (819)
19 TIGR02078 AspKin_pair Pyrococc 100.0 5E-53 1.1E-57 412.5 25.7 249 82-357 1-251 (327)
20 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 1.3E-52 2.9E-57 403.3 27.4 258 83-357 2-285 (304)
21 PRK08961 bifunctional aspartat 100.0 9.1E-53 2E-57 456.7 28.4 274 77-357 4-285 (861)
22 TIGR00657 asp_kinases aspartat 100.0 5.7E-52 1.2E-56 420.9 28.5 260 81-357 1-263 (441)
23 PRK08841 aspartate kinase; Val 100.0 2.1E-49 4.6E-54 396.5 24.8 221 80-357 1-223 (392)
24 TIGR00656 asp_kin_monofn aspar 100.0 1.6E-45 3.5E-50 369.1 25.5 221 81-357 1-224 (401)
25 cd04234 AAK_AK AAK_AK: Amino A 100.0 8.2E-44 1.8E-48 332.0 22.2 206 82-357 1-208 (227)
26 PRK06635 aspartate kinase; Rev 100.0 1.4E-43 3.1E-48 355.3 25.2 221 80-357 1-223 (404)
27 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 2.9E-43 6.3E-48 330.4 24.4 219 82-357 1-221 (239)
28 PRK08210 aspartate kinase I; R 100.0 2.1E-43 4.6E-48 354.3 24.8 221 80-357 1-228 (403)
29 cd04246 AAK_AK-DapG-like AAK_A 100.0 4.3E-43 9.3E-48 329.1 24.6 219 82-357 1-221 (239)
30 PRK07431 aspartate kinase; Pro 100.0 4.5E-43 9.7E-48 367.3 25.0 222 80-357 1-225 (587)
31 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 1.3E-42 2.9E-47 327.2 24.1 219 82-357 1-226 (244)
32 cd02115 AAK Amino Acid Kinases 100.0 4.1E-34 8.8E-39 267.4 24.0 219 84-357 1-222 (248)
33 PF00696 AA_kinase: Amino acid 100.0 6.3E-33 1.4E-37 258.5 10.1 225 81-356 1-234 (242)
34 PRK12314 gamma-glutamyl kinase 100.0 3E-28 6.6E-33 232.6 18.3 207 79-357 8-235 (266)
35 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 9.3E-28 2E-32 227.1 17.1 202 83-356 2-222 (251)
36 cd04239 AAK_UMPK-like AAK_UMPK 100.0 3.3E-27 7.2E-32 220.3 18.7 192 83-357 2-201 (229)
37 PRK00358 pyrH uridylate kinase 100.0 5.5E-27 1.2E-31 218.9 18.9 194 81-357 1-203 (231)
38 PRK14557 pyrH uridylate kinase 99.9 3.4E-26 7.4E-31 216.3 19.5 196 80-357 4-209 (247)
39 PRK14558 pyrH uridylate kinase 99.9 4.1E-26 8.9E-31 213.3 19.1 192 82-357 2-201 (231)
40 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 3.5E-26 7.5E-31 213.9 17.6 194 81-357 1-203 (231)
41 TIGR00761 argB acetylglutamate 99.9 2.6E-26 5.6E-31 214.3 15.8 197 82-341 1-205 (231)
42 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 1.1E-25 2.3E-30 213.0 16.0 210 83-355 1-223 (252)
43 TIGR02075 pyrH_bact uridylate 99.9 4.7E-25 1E-29 206.6 18.3 194 81-357 2-205 (233)
44 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 5.8E-25 1.3E-29 204.3 17.4 183 83-357 2-193 (221)
45 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 4.4E-25 9.4E-30 211.9 14.3 199 81-341 15-230 (279)
46 TIGR02076 pyrH_arch uridylate 99.9 3.5E-24 7.6E-29 198.8 17.1 184 83-357 1-193 (221)
47 PRK00942 acetylglutamate kinas 99.9 1.8E-24 4E-29 207.9 14.1 198 80-341 23-231 (283)
48 cd04238 AAK_NAGK-like AAK_NAGK 99.9 5.7E-24 1.2E-28 201.5 13.2 194 83-340 1-206 (256)
49 PRK13402 gamma-glutamyl kinase 99.9 1.3E-22 2.8E-27 201.7 18.0 203 79-356 4-227 (368)
50 PRK14058 acetylglutamate/acety 99.9 2.1E-22 4.5E-27 192.4 17.7 206 82-348 1-228 (268)
51 PRK05429 gamma-glutamyl kinase 99.9 2.8E-22 6.2E-27 199.9 17.3 206 79-356 7-231 (372)
52 PLN02418 delta-1-pyrroline-5-c 99.9 7E-22 1.5E-26 211.4 14.7 192 79-335 14-224 (718)
53 cd04241 AAK_FomA-like AAK_FomA 99.9 1E-20 2.2E-25 178.8 19.0 189 82-339 1-198 (252)
54 PLN02512 acetylglutamate kinas 99.9 9.7E-21 2.1E-25 184.6 19.3 201 81-340 48-257 (309)
55 TIGR01027 proB glutamate 5-kin 99.9 4.7E-21 1E-25 190.5 16.2 147 193-356 67-223 (363)
56 PRK14556 pyrH uridylate kinase 99.8 2.6E-20 5.7E-25 175.8 17.0 197 80-357 15-219 (249)
57 CHL00202 argB acetylglutamate 99.8 5.5E-20 1.2E-24 177.3 17.8 202 81-341 24-233 (284)
58 cd04255 AAK_UMPK-MosAB AAK_UMP 99.8 2.2E-19 4.9E-24 171.2 20.2 193 81-356 31-231 (262)
59 COG0548 ArgB Acetylglutamate k 99.8 6E-20 1.3E-24 174.2 15.3 201 80-341 2-214 (265)
60 COG0528 PyrH Uridylate kinase 99.8 3E-19 6.4E-24 165.6 18.8 196 80-357 5-209 (238)
61 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.8 2.1E-19 4.5E-24 170.9 17.1 195 83-340 1-212 (257)
62 cd04252 AAK_NAGK-fArgBP AAK_NA 99.7 6.1E-16 1.3E-20 146.4 17.7 190 84-340 2-199 (248)
63 TIGR01092 P5CS delta l-pyrroli 99.7 3.4E-16 7.4E-21 167.9 14.3 190 80-335 7-216 (715)
64 TIGR01890 N-Ac-Glu-synth amino 99.7 1.4E-15 3E-20 154.4 17.4 195 81-339 18-227 (429)
65 cd04256 AAK_P5CS_ProBA AAK_P5C 99.7 1.1E-15 2.4E-20 147.5 15.3 132 194-338 94-230 (284)
66 cd04236 AAK_NAGS-Urea AAK_NAGS 99.7 2.4E-15 5.2E-20 144.1 17.0 184 78-341 33-223 (271)
67 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.7 5E-15 1.1E-19 142.7 17.9 197 81-342 19-231 (280)
68 PLN02825 amino-acid N-acetyltr 99.6 5E-15 1.1E-19 153.0 17.9 199 80-341 17-237 (515)
69 PTZ00489 glutamate 5-kinase; P 99.6 6.2E-15 1.3E-19 140.9 17.1 124 197-336 75-201 (264)
70 PRK05279 N-acetylglutamate syn 99.6 1.2E-14 2.6E-19 148.0 16.3 194 81-339 26-235 (441)
71 COG1608 Predicted archaeal kin 99.6 2E-13 4.4E-18 127.1 19.1 125 203-343 81-225 (252)
72 COG0263 ProB Glutamate 5-kinas 99.5 3.1E-13 6.8E-18 131.9 16.2 190 79-339 5-205 (369)
73 PRK12352 putative carbamate ki 99.5 4.6E-13 1E-17 130.9 16.0 138 198-341 87-268 (316)
74 PRK12353 putative amino acid k 99.5 3.8E-13 8.3E-18 131.6 15.2 85 254-340 178-265 (314)
75 cd04240 AAK_UC AAK_UC: Unchara 99.5 9.4E-13 2E-17 121.3 15.3 106 190-335 50-158 (203)
76 cd04235 AAK_CK AAK_CK: Carbama 99.4 6.1E-12 1.3E-16 122.5 18.3 99 256-356 176-283 (308)
77 PRK04531 acetylglutamate kinas 99.4 4.1E-12 8.9E-17 128.0 13.6 158 81-339 37-197 (398)
78 TIGR00746 arcC carbamate kinas 99.4 3.3E-11 7.1E-16 117.7 18.9 83 255-339 176-261 (310)
79 PRK12686 carbamate kinase; Rev 99.3 3.9E-11 8.6E-16 117.0 15.4 87 253-341 175-264 (312)
80 PRK12454 carbamate kinase-like 99.2 1.8E-09 3.8E-14 105.5 19.4 83 256-341 180-266 (313)
81 PRK12354 carbamate kinase; Rev 99.1 1.7E-09 3.7E-14 105.3 15.5 91 254-348 168-263 (307)
82 PRK09411 carbamate kinase; Rev 98.9 2.3E-08 5.1E-13 96.8 15.5 80 254-339 169-252 (297)
83 KOG1154 Gamma-glutamyl kinase 98.7 1.8E-07 4E-12 87.2 12.6 106 209-333 104-214 (285)
84 COG2054 Uncharacterized archae 98.4 1.4E-05 3E-10 72.2 14.2 65 277-355 114-178 (212)
85 COG0549 ArcC Carbamate kinase 97.8 7.9E-05 1.7E-09 71.7 8.2 81 253-341 176-265 (312)
86 KOG2436 Acetylglutamate kinase 97.3 0.0014 3.1E-08 67.2 10.2 123 199-339 170-303 (520)
87 PRK03670 competence damage-ind 68.0 21 0.00046 34.2 7.5 70 204-301 20-89 (252)
88 PF00994 MoCF_biosynth: Probab 64.5 36 0.00077 29.1 7.6 68 204-300 17-84 (144)
89 COG1058 CinA Predicted nucleot 63.5 31 0.00067 33.2 7.6 68 205-301 22-89 (255)
90 cd00885 cinA Competence-damage 56.2 60 0.0013 29.0 7.8 68 205-301 20-87 (170)
91 TIGR00177 molyb_syn molybdenum 50.7 91 0.002 26.8 7.9 65 205-298 28-92 (144)
92 PRK03673 hypothetical protein; 48.1 71 0.0015 32.7 7.7 68 205-301 22-89 (396)
93 PRK01215 competence damage-ind 48.0 79 0.0017 30.4 7.7 69 204-301 23-91 (264)
94 TIGR02667 moaB_proteo molybden 45.7 77 0.0017 28.1 6.7 69 203-299 21-90 (163)
95 smart00852 MoCF_biosynth Proba 42.3 1.2E+02 0.0026 25.4 7.2 69 203-300 17-85 (135)
96 cd00886 MogA_MoaB MogA_MoaB fa 40.3 1.2E+02 0.0026 26.2 7.1 66 205-299 21-88 (152)
97 PRK00549 competence damage-ind 39.9 1.2E+02 0.0027 31.0 8.1 69 204-301 20-88 (414)
98 cd00758 MoCF_BD MoCF_BD: molyb 39.9 1.5E+02 0.0032 25.0 7.4 66 204-298 19-84 (133)
99 PF02374 ArsA_ATPase: Anion-tr 35.7 73 0.0016 31.2 5.4 59 96-162 113-171 (305)
100 cd02129 PA_hSPPL_like PA_hSPPL 34.0 1.9E+02 0.0041 24.6 7.0 63 276-338 44-109 (120)
101 PF13511 DUF4124: Domain of un 33.7 37 0.0008 24.5 2.3 28 292-319 4-33 (60)
102 COG0303 MoeA Molybdopterin bio 32.9 1.6E+02 0.0035 30.2 7.5 72 205-307 204-275 (404)
103 TIGR00200 cinA_nterm competenc 32.5 2.1E+02 0.0045 29.4 8.3 68 205-301 21-88 (413)
104 PHA01735 hypothetical protein 31.1 1.4E+02 0.0029 23.2 5.0 34 193-227 21-56 (76)
105 PF02601 Exonuc_VII_L: Exonucl 30.4 73 0.0016 31.0 4.5 43 225-273 75-117 (319)
106 cd04819 PA_2 PA_2: Protease-as 27.5 2.6E+02 0.0057 23.4 6.9 38 276-313 44-84 (127)
107 PRK05686 fliG flagellar motor 26.0 5.4E+02 0.012 25.4 9.8 70 146-217 232-302 (339)
108 KOG2825 Putative arsenite-tran 23.8 4.5E+02 0.0097 25.8 8.2 62 93-162 126-187 (323)
109 PRK10680 molybdopterin biosynt 23.8 3.7E+02 0.0081 27.5 8.4 72 204-307 204-275 (411)
110 cd02133 PA_C5a_like PA_C5a_lik 23.3 2.5E+02 0.0054 23.9 6.1 63 277-340 48-111 (143)
111 cd04816 PA_SaNapH_like PA_SaNa 23.1 3.6E+02 0.0077 22.2 6.8 63 276-339 43-110 (122)
112 PRK03604 moaC bifunctional mol 22.7 3.7E+02 0.0081 26.6 7.8 67 204-298 175-241 (312)
113 cd02120 PA_subtilisin_like PA_ 21.7 2.9E+02 0.0062 22.5 6.0 61 277-339 52-114 (126)
114 cd04817 PA_VapT_like PA_VapT_l 21.1 4.5E+02 0.0097 22.8 7.2 66 271-339 52-129 (139)
115 PF02225 PA: PA domain; Inter 21.0 2.6E+02 0.0057 21.5 5.4 51 289-339 47-99 (101)
116 cd02130 PA_ScAPY_like PA_ScAPY 20.0 4.1E+02 0.0089 21.8 6.6 64 276-339 44-110 (122)
No 1
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-72 Score=543.83 Aligned_cols=351 Identities=64% Similarity=0.946 Sum_probs=327.0
Q ss_pred cccccccccccccccc---cccccccccccccccccccccccccCCccccceeEEeecCcchhhhccccccccccCcCCC
Q 018295 3 NTMQFSSIIQKNSLHC---QALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEK 79 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++|++|+++++.... ....+++..|+...+++.+.++ +.+|+. -++|++|+..++...+++.+++...+. ++
T Consensus 2 a~~~~~~~~~~~l~l~~~r~~~~~~~~~f~~~~~~~~~~~~--~~s~~~-i~~~~~~~~~r~~l~~~k~~e~~~s~g-~k 77 (559)
T KOG0456|consen 2 ASTQVYGVKTPRLALTSKRLEFSSKGVDFSTLKKSSLPIGR--GSSCRN-ISLRVSCEAVRVVLLERKNPETDPSNG-EK 77 (559)
T ss_pred CceeEEeecCCCcccccccccccccCccchhhccccccccC--Ccccee-ceeeeeeeeeeEeeecccCcccCccCC-Cc
Confidence 6789999999886533 4555888888888887776665 566654 499999999999888888888766555 88
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
+.|+|+||||||+++++++..|+..+..+++++++||+|||+++||.|+..++++..|+..+.+..++++.|++.|++.+
T Consensus 78 ~~~~V~KFGGsSV~s~~~~i~v~~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~ta 157 (559)
T KOG0456|consen 78 GLTCVMKFGGSSVGSAERMIEVAVLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRTA 157 (559)
T ss_pred ceEEEEecCCccccccchhhhhhHHHHhcCCCCeEEEEEccccchhhhhhhhhheecccccCcchHHHHHHHHHHHHhhH
Confidence 89999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
++|+.++..+.++++.|+++|+++++++|++++++|+++||||++|+++|+++|++.|++|.++|.+++++++.+++.+.
T Consensus 158 ~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~ 237 (559)
T KOG0456|consen 158 HELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTND 237 (559)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
++++.+++.+.+.+...|-.++.|||++||.|..++.|..+++||||+|++|+.||.+||++++++|+|||||+|+||++
T Consensus 238 d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~ 317 (559)
T KOG0456|consen 238 DILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRI 317 (559)
T ss_pred hHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCcc
Confidence 99999998888888888888889999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|.|+++|.+|++||.||+|||++||||.+|+++++.+
T Consensus 318 ~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~ 355 (559)
T KOG0456|consen 318 YPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGR 355 (559)
T ss_pred CCCccccCccCHHHHHHHHhhhhhhccccccchhhccC
Confidence 99999999999999999999999999999999998765
No 2
>PLN02551 aspartokinase
Probab=100.00 E-value=5e-70 Score=561.07 Aligned_cols=315 Identities=75% Similarity=1.114 Sum_probs=283.1
Q ss_pred cCCccccceeEEeecCcchhhhccccccccccCcCCCCceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc
Q 018295 43 RNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK 122 (358)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg 122 (358)
...|++++.+++.|..+......+..++........+++++|+|||||||+|+++|++|+++|.+.++.++|||||||+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVvSA~~~ 93 (521)
T PLN02551 14 VGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGSSVASAERMREVADLILSFPDERPVVVLSAMGK 93 (521)
T ss_pred ccccchhHHHHhhhhhhhhHhhhhcccccccccccccCceEEEEECCCccCCHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 34455566888888777765555666666666777778999999999999999999999999998766678999999999
Q ss_pred CchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHH
Q 018295 123 TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGE 202 (358)
Q Consensus 123 ~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE 202 (358)
+||.|+++++.+..++..+.++...++.++++|.+++++|+.+...+..++++|+++++++.++++++++.+|+|+|+||
T Consensus 94 ~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE 173 (521)
T PLN02551 94 TTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGE 173 (521)
T ss_pred chHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHH
Confidence 99999999888876654445577789999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEee
Q 018295 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 203 ~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttl 282 (358)
+||+.||+.+|++.|+++.++|++++||+|+++|+++++.+.+++++.+.+...|.+.+.|||+|||+|.++++|++|||
T Consensus 174 ~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttL 253 (521)
T PLN02551 174 RMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTL 253 (521)
T ss_pred HHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEec
Confidence 99999999999999999999999999999999999999887778888887765555567899999999998238999999
Q ss_pred CCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||||||||++||++|+|++++||||||||||+|||++|+|+++++|||+||.|||||||+||||+||+|+...+
T Consensus 254 GRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~ 328 (521)
T PLN02551 254 GRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGD 328 (521)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998754
No 3
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=1.8e-62 Score=472.07 Aligned_cols=262 Identities=32% Similarity=0.452 Sum_probs=230.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-------cCchHHHHHhHHHHhcCCCccchHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMG-------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~g-------g~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (358)
|+|+|||||||+|+++|++|+++|... .++++||||||+ |+||.|+++++.+.. ..++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~----~~~~~~~~~~i~~~ 75 (288)
T cd04245 1 MKVVKFGGSSLASAEQFQKVKAIVKAD-PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLA----GEDTESIFEAIVDR 75 (288)
T ss_pred CEEEEECcCccCCHHHHHHHHHHHHhc-CCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhc----CcchHHHHHHHHHH
Confidence 689999999999999999999999865 467899999998 599999998887654 12467789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC
Q 018295 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (358)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~ 234 (358)
|.+++++|+.+.+.+.+..+.++++.+ +...++++.+|+|+|+||+||+.+|+.+|+++|+++.++|++++++++++
T Consensus 76 h~~~~~~L~~~~~~~~~i~~~~~~l~~---~~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~ 152 (288)
T cd04245 76 YAEIADELGLPMSILEEIAEILENLAN---LDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTD 152 (288)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecC
Confidence 999999998776554444444444443 23357889999999999999999999999999999999999999999999
Q ss_pred CCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
+++++++...+.+++.+.+ +++.|||++||+|.+ .+|++++||||||||+|+++|.+|+|+++++|||||||||
T Consensus 153 ~~~~a~~~~~~~~~~~~~~-----~~~~v~Vv~Gf~g~~-~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvyt 226 (288)
T cd04245 153 EPGNAQILPESYQKIKKLR-----DSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYA 226 (288)
T ss_pred CccccccchhhHHHHHHHH-----hCCCEEEEeCccccC-CCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceEC
Confidence 9998887665666555543 457899999999998 5999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+||+++|+|+++++|||+||.||+++|++||||+||+++++.+
T Consensus 227 aDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~ 269 (288)
T cd04245 227 ANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAG 269 (288)
T ss_pred CCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999865
No 4
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-63 Score=499.59 Aligned_cols=262 Identities=39% Similarity=0.587 Sum_probs=226.8
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~--~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
.|+|+|||||||+|+++|++++++|.++.+ .+.|||||||+++||.|+++++.+.+... . .. .++|.++
T Consensus 2 ~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~----~-~~----~~~~~~~ 72 (447)
T COG0527 2 RLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD----A-VA----EQRHRDI 72 (447)
T ss_pred ceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccc----h-hH----HHHHHHH
Confidence 479999999999999999999999998643 67889999999999999999876543211 1 11 5666666
Q ss_pred HHHhCCCHH---HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 159 VDELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 159 ~~~L~~~~~---~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
+.++..+.. .+.....++++.+.++..+++.+++.+|+|+|+||++|+.||+++|+++|++|.+++++++++.+++.
T Consensus 73 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~ 152 (447)
T COG0527 73 ASELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSN 152 (447)
T ss_pred HHHHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCc
Confidence 666655442 23344444477888888999999999999999999999999999999999999999999999999989
Q ss_pred CCCceeeccchHH-HHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 236 FTNADILEATYPA-VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 236 ~~~a~i~~~~~~~-i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
++++.+....+++ +.. +++.+.||||+||+|.+ ++|+++|||||||||||++||++|+|+++.||||||||||
T Consensus 153 ~~~a~i~~~~~~~~l~~-----~~~~~~v~Vv~GF~G~~-~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~T 226 (447)
T COG0527 153 HGNARILDEDSERRLLR-----LLEEGKVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYT 226 (447)
T ss_pred ccccccchhhhhhhHHH-----HhcCCcEEEecCceeec-CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCcc
Confidence 9998886655544 332 24678999999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|||++|+|++|++|||+||.|||++|||||||+|++|+.+++
T Consensus 227 aDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~ 269 (447)
T COG0527 227 ADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSG 269 (447)
T ss_pred CCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999876
No 5
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=3.9e-62 Score=470.60 Aligned_cols=269 Identities=35% Similarity=0.490 Sum_probs=240.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (358)
|+|+|||||||+|++++++++++|... ++++|||||||+|+||.|+++++.+..+. ..++.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~~vTd~L~~~~~~~~~~~--~~~~~~~l~~l~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKSD-ASVRLVVVSASAGVTNLLVALADAAESGE--EIESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECccccCCHHHHHHHHHHHhcc-CCCEEEEEeCCCCchHHHHHHHHHHhcCC--cchhhHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999875 56789999999999999999988776532 123556799999999999999
Q ss_pred hCCCHH---HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 162 LGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 162 L~~~~~---~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
|..+.+ .|...+++|+++++++.++++++++.+|+|+++||+||+.||+.+|+++|+++.++|++++ ++|++++++
T Consensus 78 L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred hhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCcc
Confidence 987754 5889999999999999999999999999999999999999999999999999999999998 889988988
Q ss_pred ceeecc-chHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 239 ADILEA-TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 239 a~i~~~-~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
++++.. +.+.+...+. .+ .++.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 157 a~~~~~~~~~~~~~~~~-~~-~~~~v~Vv~Gf~g~~-~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP 233 (292)
T cd04258 157 AAPDLNALAELAAKLLK-PL-LAGTVVVTQGFIGST-EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDP 233 (292)
T ss_pred ccccHHHHHHHHHHHHH-Hh-hcCCEEEECCccccC-CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 877432 2333443332 22 355899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+++|+|++++.|||+||.||+++|++|+||+|+.++.+.+
T Consensus 234 ~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ 273 (292)
T cd04258 234 RICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKN 273 (292)
T ss_pred CCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998764
No 6
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=8.3e-62 Score=470.16 Aligned_cols=271 Identities=52% Similarity=0.741 Sum_probs=246.1
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 018295 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (358)
Q Consensus 83 ~V~KFGGSSl~s~e~i~~Va~iI~~~-~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (358)
+|+|||||||+|+++|++|+++|.+. .++++|||||||+|+||.|+++++.+... ..+++.+.++.++++|.+++++
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~iI~~~~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~--~~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 2 LVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSG--RIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999874 35688999999999999999998876532 1235778899999999999999
Q ss_pred hCCCH------HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 162 L~~~~------~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
|..+. +.|.+++++|+++++++..+++++++.+|+|+|+||+||+.||+.+|+++|+++.++++++++++++++
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCc
Confidence 98763 468899999999999999999999999999999999999999999999999999999999998999998
Q ss_pred CCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccC
Q 018295 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (358)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyta 315 (358)
++++.++..+..++++.+. .+++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|++++|||||||||++
T Consensus 160 ~~~a~~~~~~~~~i~~~l~-~ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~ 237 (298)
T cd04244 160 FGNARPLPATYERVRKRLL-PMLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTA 237 (298)
T ss_pred ccccccchhHHHHHHHHHH-HHhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 8877665556677777665 345678999999999998 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 316 DP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||+++|+++++++|||+||.||+++|++||||+|++++.+.+
T Consensus 238 dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~ 279 (298)
T cd04244 238 DPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKG 279 (298)
T ss_pred CCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999865
No 7
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=1.6e-61 Score=467.22 Aligned_cols=267 Identities=36% Similarity=0.532 Sum_probs=239.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
|+|+|||||||+|+++|++|+++|.... +.++|||||||+|+||.|+++++.+.+. +..+...++.++++|..+++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vvVvSA~~gvTd~L~~~~~~~~~~---~~~~~~~l~~i~~~h~~~~~ 77 (294)
T cd04257 1 MKVLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASSG---DDAYEDILQELESKHLDLIT 77 (294)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCcHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998653 5678999999999999999998876542 22356689999999999999
Q ss_pred HhCCCH------HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC
Q 018295 161 ELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (358)
Q Consensus 161 ~L~~~~------~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~ 234 (358)
+|..+. +.|.+.+++|+++++++.++++++++.+|+|+|+||+||+.||+.+|+++|+++.++|++++ |++++
T Consensus 78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~ 156 (294)
T cd04257 78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG 156 (294)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecC
Confidence 997653 35888999999999999999999999999999999999999999999999999999999996 88988
Q ss_pred CCCCceeec-cchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccc
Q 018295 235 DFTNADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (358)
Q Consensus 235 ~~~~a~i~~-~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVy 313 (358)
+++++.+.. .+.+.+++.+. ..+.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~a~~~~~~~~~~l~~~~~----~~~~v~Vv~Gfig~~-~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvy 231 (294)
T cd04257 157 GYLNAVVDIELSKERIKAWFS----SNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVY 231 (294)
T ss_pred CCCceEechHhhHHHHHHHHh----cCCCEEEecCcccCC-CCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence 888888743 33444444332 227899999999998 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 314 taDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|+||+++|+|+++++|||+||.+|+++|+||+||+|++++.+.+
T Consensus 232 t~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~ 275 (294)
T cd04257 232 SADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKN 275 (294)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999875
No 8
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00 E-value=2.3e-61 Score=465.93 Aligned_cols=266 Identities=37% Similarity=0.553 Sum_probs=237.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (358)
|+|+|||||||+|+++|++++++|....+.+++||||||+|+||.|+++++.+.+.. ..+...++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvSA~~gvTd~L~~~~~~a~~~~---~~~~~~l~~i~~~h~~~~~~ 77 (293)
T cd04243 1 MKVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGD---DAQAIVLQEIRERHLDLIKE 77 (293)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999875456889999999999999999988776432 23445699999999999999
Q ss_pred hCCCHH------HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 162 LGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 162 L~~~~~------~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
|..+.+ .+..++++|+++++++.++++++++.+|+|+|+||+||+.||+.+|+++|+++.++|++++ +++++.
T Consensus 78 L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~ 156 (293)
T cd04243 78 LLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDG 156 (293)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHe-EEecCC
Confidence 987643 5889999999999999999999999999999999999999999999999999999999997 888888
Q ss_pred CCCceeecc-chHHHHHHHhhchhcC-CceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccc
Q 018295 236 FTNADILEA-TYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (358)
Q Consensus 236 ~~~a~i~~~-~~~~i~~~l~~~ll~~-~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVy 313 (358)
++++++... +.+.+... +.. +.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~~~~~~~s~~~~~~~-----~~~~~~v~Vv~Gfig~~-~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiy 230 (293)
T cd04243 157 FLNAVVDLKLSKERLAQL-----LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVY 230 (293)
T ss_pred CCcchhhhHHHHHHHHHH-----HhcCCCEEEecCccccC-CCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 887765332 23333332 233 7899999999998 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 314 taDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|+||+++|+|+++++|||+||.+|+++|++|+||+|++++++.+
T Consensus 231 t~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~ 274 (293)
T cd04243 231 TADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKN 274 (293)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999875
No 9
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=1e-60 Score=461.63 Aligned_cols=265 Identities=31% Similarity=0.481 Sum_probs=234.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
|+|+|||||||+|++++++|+++|.... .+++|||||||+|+||.|+++++.+.. ..+.+.++.++++|.+++
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~-----~~~~~~l~~i~~~~~~~~ 75 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALL-----DEHHSLFNAIQSRHLNLA 75 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhc-----cChHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998642 457899999999999999999887653 225677999999999999
Q ss_pred HHhCCCH-HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 160 DELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 160 ~~L~~~~-~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
++|..+. ..|...+++|+++++++.++++++++.+|+|+|+||+||+.||+.+|+++|+++.++|++++ +++++++++
T Consensus 76 ~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 76 EQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 9998654 46889999999999999999999999999999999999999999999999999999999998 777777654
Q ss_pred c-------eee-ccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 239 A-------DIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 239 a-------~i~-~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+ .+. +.+...+.+.+ ...+.|||+|||+|.+ .+|+++||||||||++|+++|.+|+|+++++|||||
T Consensus 155 ~~~~~~~a~v~~~~~~~~l~~~l----~~~~~v~Vv~GFig~~-~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~ 229 (295)
T cd04259 155 ETMNYLSARCESEYADALLQKRL----ADGAQLIITQGFIARN-AHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVP 229 (295)
T ss_pred cccccccceehhhhhHHHHHHHH----hcCCceeEeCCceeeC-CCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 3 331 23334444443 2335799999999999 599999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|+|+++++|||+||.+|+++|++|+||+|++++++.+
T Consensus 230 Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ 276 (295)
T cd04259 230 GLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRAN 276 (295)
T ss_pred ccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999875
No 10
>PRK09084 aspartate kinase III; Validated
Probab=100.00 E-value=4.4e-60 Score=481.04 Aligned_cols=265 Identities=32% Similarity=0.466 Sum_probs=235.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (358)
|+|+|||||||+|++++++|+++|++. +.++|||||||+|+||.|+++++.+... +++.+.++.|+++|..++++
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~~-~~~~vvVVSA~~~~Td~L~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~ 75 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLSN-PNTRLVVLSASAGVTNLLVALAEGAEPG----DERLALLDEIRQIQYAILDR 75 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCchHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999863 5688999999999999999998877642 46788899999999999999
Q ss_pred hCCCH---HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 162 L~~~~---~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
|+.+. ..+.+++++|+++++++.. +++++.+|+|+|+||+||+.|++.+|+++|+++.++|++++ ++|+++|++
T Consensus 76 l~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 152 (448)
T PRK09084 76 LGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGR 152 (448)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhhhh--cCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCc
Confidence 97664 3588999999999998876 78889999999999999999999999999999999999998 889999988
Q ss_pred ceeeccc-hHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 239 a~i~~~~-~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
+++.... ...+.+.+. .+++.+ |||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~-~~~~~~-v~Vv~Gf~g~~-~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 153 AEPDVAALAELAQEQLL-PLLAEG-VVVTQGFIGSD-EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred ccccHHHHHHHHHHHHH-HhhcCC-cEEecCeeecC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 8763322 222333332 234556 99999999998 6999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|++|+|+++++|||+||.||+++|++|+||+|+.++.+.+
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~ 269 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSN 269 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998764
No 11
>PRK09034 aspartate kinase; Reviewed
Probab=100.00 E-value=7.2e-60 Score=480.31 Aligned_cols=262 Identities=32% Similarity=0.440 Sum_probs=233.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------CchHHHHHhHHHHhcCCCccchHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg-------~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (358)
|+|+|||||||+|++++++|+++|.+. .+++|||||||+| +||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~----~~~~~~~~~~~~~ 75 (454)
T PRK09034 1 MKVVKFGGSSLASAEQFKKVLNIVKSD-PERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAG----EDYEDIFEAIIAR 75 (454)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHhcc-CCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcC----CcHHHHHHHHHHH
Confidence 789999999999999999999999864 4578999999986 999999998876542 3577889999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC
Q 018295 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (358)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~ 234 (358)
|..++++|+.+.+.+....++|+++... +.+++++.+|+|+|+||++|+.||+.+|+++|+++.++|+++++++|++
T Consensus 76 ~~~~~~~L~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~ 152 (454)
T PRK09034 76 YAEIAKELGLDADILEKIEEILEHLANL---ASRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTD 152 (454)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecC
Confidence 9999999988877666666666666653 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
+++++.+...+++.+...+ ..+.|||+|||+|.+ .+|+++|||||||||||+++|.+|+|+++++|||||||||
T Consensus 153 ~~~~a~i~~~~~~~~~~~~-----~~~~v~Vv~GFig~~-~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~t 226 (454)
T PRK09034 153 EPGNAQVLPESYDNLKKLR-----DRDEKLVIPGFFGVT-KDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYA 226 (454)
T ss_pred CcCceeEcHhhHHHHHHHH-----hcCCEEEecCccccC-CCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCc
Confidence 9998887655555444322 355799999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|||++|+|+++++|||+||.||+++|++||||+|++++++.+
T Consensus 227 aDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~ 269 (454)
T PRK09034 227 ANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGG 269 (454)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999865
No 12
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00 E-value=1.1e-59 Score=456.01 Aligned_cols=268 Identities=30% Similarity=0.447 Sum_probs=227.0
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCC------cCchHHHHHhHHHHhcCCCccchHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMG------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~g------g~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (358)
|+|+|||||||+|++ ++++++|... .+.++|||||||+ |+||.|+++++.+.... ..++++.++.+++
T Consensus 2 ~~V~KFGGtSv~~~~--~~v~~~i~~~~~~~~~~vVVvSA~~~~~~~~gvTd~L~~~~~~a~~~~--~~~~~~~l~~i~~ 77 (306)
T cd04247 2 WVVQKFGGTSVGKFP--DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQ--EKAFHDIVEDIRS 77 (306)
T ss_pred CEEEEeCchhhccHH--HHHHHHHHhhhccCCceEEEEeccccCCCccChHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 789999999999984 7999866642 2457899999998 99999999988775422 2467888999999
Q ss_pred HHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeecc
Q 018295 154 LHHRTVDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226 (358)
Q Consensus 154 ~~~~~~~~L~~~~-------~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~ 226 (358)
+|.+++++|..+. +.+++.+++|++++.++.++++++++.+|+|+|+||+||+.||+.+|+++|+++.++|++
T Consensus 78 ~h~~~~~~L~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~ 157 (306)
T cd04247 78 DHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLS 157 (306)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHH
Confidence 9999999997653 247889999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeCCCCCceeeccchHHHHHHHhhchhc-CCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEE
Q 018295 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (358)
Q Consensus 227 d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i 305 (358)
++ +.++... ..+.......+.+.+...+.+ .+.|||+|||+|.+ .+|+++|||||||||+|+++|..|+|++++|
T Consensus 158 ~~-i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~-~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i 233 (306)
T cd04247 158 HI-VDLDFSI--EALDQTFYDELAQVLGEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQI 233 (306)
T ss_pred Hh-eecCCCc--cccccchhHHHHHHHHHHhhccCCceEEeeccEecC-CCCCeEEeCCCchHHHHHHHHHHcCCCEEEE
Confidence 96 5444321 111111122333333333322 46799999999998 5899999999999999999999999999999
Q ss_pred eecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 306 ~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||||||||+||+++|+|+++++|||+||.||+++|+|||||+||+|+.+.+
T Consensus 234 ~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~ 285 (306)
T cd04247 234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKAR 285 (306)
T ss_pred eecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999998764
No 13
>PRK06291 aspartate kinase; Provisional
Probab=100.00 E-value=5.4e-58 Score=467.86 Aligned_cols=274 Identities=41% Similarity=0.642 Sum_probs=247.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
||+|+|||||||+|++++++|+++|.+. .+.++|||||||+|+||.|+++++.+... ...+++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 79 (465)
T PRK06291 1 MRLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDV-RDIAKVKDFIADLRERHYKA 79 (465)
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999864 34688999999999999999988776431 12246788899999999999
Q ss_pred HHHhCCCH-------HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 159 VDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 159 ~~~L~~~~-------~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
+++|..++ ..++.++++|+++++++..+++++++.+|+|+|+||+||+.||+.+|+++|+++.++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~ 159 (465)
T PRK06291 80 IEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII 159 (465)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEE
Confidence 99997543 24788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
+++.++++.+.+.++.++.+.+. .+++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|+++++||||||
T Consensus 160 t~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~vpVv~Gfig~~-~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~G 237 (465)
T PRK06291 160 TDSNFGNARPLPKTYERVKERLE-PLLKEGVIPVVTGFIGET-EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237 (465)
T ss_pred ecCCCCceeechhhHHHHHHHHH-HHhhcCcEEEEeCcEEcC-CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCC
Confidence 99999888776566677766554 345778999999999998 5899999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||++||+++|+|+++++|||+||.+|+++|++|+||+|++++++.+
T Consensus 238 i~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~ 283 (465)
T PRK06291 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKG 283 (465)
T ss_pred CCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999865
No 14
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=1.3e-57 Score=489.26 Aligned_cols=266 Identities=29% Similarity=0.413 Sum_probs=225.7
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 78 EKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 78 ~~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
.+|.|+|+|||||||+|+++|++|+++|....+.+++||||||+|+||.|+++++.+.. ....+.+.++.++++|..
T Consensus 8 ~~M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVVSA~~~~Td~L~~~~~~~~~---~~~~~~~~l~~i~~~h~~ 84 (810)
T PRK09466 8 GAMGRQLHKFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQT---DRLSAHQVQQTLRRYQQD 84 (810)
T ss_pred ccceeEEEEECccccCCHHHHHHHHHHHhhhccCCEEEEEcCCCCCHHHHHHHHHHhhc---CchhHHHHHHHHHHHHHH
Confidence 45678999999999999999999999998765556899999999999999998875532 123456789999999999
Q ss_pred HHHHhCCCHH------HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 158 TVDELGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 158 ~~~~L~~~~~------~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
++++|..++. .+.+.+++|++++. ++++++.+|+|+|+||+||+.||+.+|+++|+++.++|++++ +
T Consensus 85 ~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~--i 157 (810)
T PRK09466 85 LIEGLLPAEQARSLLSRLISDLERLAALLD-----GGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSF--L 157 (810)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHHHHHHhh-----ccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHh--e
Confidence 9999976532 25566666666665 378899999999999999999999999999999999999995 4
Q ss_pred eeCCCCCcee-eccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+++.+.++++ ...+.+.+.+.+.. ..+.|||++||+|.+ .+|+++|||||||||||++||++|+|++++||||||
T Consensus 158 ~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~v~Vv~GF~g~~-~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~ 233 (810)
T PRK09466 158 RAERAAQPQVDEGLSYPLLQQLLAQ---HPGKRLVVTGFISRN-EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVA 233 (810)
T ss_pred ecCCCCCcccchhhhHHHHHHHHhc---cCCeEEEeeCccccC-CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 4444445555 23334444443321 134799999999999 599999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||||+|||++|+|+++++|||+||.||+++|||||||+||+|+.+.+
T Consensus 234 Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~ 280 (810)
T PRK09466 234 GVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSD 280 (810)
T ss_pred ccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998865
No 15
>PRK05925 aspartate kinase; Provisional
Probab=100.00 E-value=3.2e-56 Score=451.04 Aligned_cols=260 Identities=28% Similarity=0.402 Sum_probs=227.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
|.|+|+|||||||+|++++++|+++|... .+++||||||+|+||.|+++++.+. ....+.++.++++|..++
T Consensus 1 ~~~~V~KFGGtSv~~~e~i~~v~~ii~~~--~~~vVVvSA~~~~Td~L~~~~~~a~------~~~~~~~~~i~~~~~~~~ 72 (440)
T PRK05925 1 MAPLVYKFGGTSLGTAESIRRVCDIICKE--KPSFVVVSAVAGVTDLLEEFCRLSK------GKREALTEKIREKHEEIA 72 (440)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHhcC--CCEEEEECCCCCCHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999863 5679999999999999999877542 234567899999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
++|..+.. +...+++|+++++ .++++++.+|+++|+||++|+.||+.+|+++|+++.++|++++ ++|+++|+++
T Consensus 73 ~~l~~~~~-~~~~~~~L~~~~~----~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a 146 (440)
T PRK05925 73 KELGIEFS-LSPWWERLEHFED----VEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRA 146 (440)
T ss_pred HHhhcchh-hhHHHHHHHHHHH----hCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCcccc
Confidence 99976532 5566667777665 4678889999999999999999999999999999999999998 8999889887
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
++. .+.+.+.+....++++.|||+|||+|.+ .+|+++|||||||||+|+++|.+|+|+.+++|||||||||+||++
T Consensus 147 ~~~---~~~~~~~~~~~~~~~~~v~Vv~GF~g~~-~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~ 222 (440)
T PRK05925 147 VPD---LALMQTAWHELALQEDAIYIMQGFIGAN-SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKI 222 (440)
T ss_pred ccC---HHHHHHHHHHhhccCCcEEEecCcceeC-CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCC
Confidence 763 2334444444334566899999999999 599999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|+|+++++|+|+||.||+++|++++||++++++++++
T Consensus 223 ~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~ 260 (440)
T PRK05925 223 IKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAG 260 (440)
T ss_pred CCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999875
No 16
>PRK08373 aspartate kinase; Validated
Probab=100.00 E-value=1.8e-55 Score=431.81 Aligned_cols=254 Identities=32% Similarity=0.496 Sum_probs=216.7
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~-~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
+|+|+|||||||++ ++++++++|... .+.++|||||||+|+||.|+++++.+ ..+.++.|+++|.+++
T Consensus 4 ~m~V~KFGGsSv~~--~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~---------~~~~l~~i~~~h~~~~ 72 (341)
T PRK08373 4 KMIVVKFGGSSVRY--DFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETF---------DKEALEEIEEIHEEFA 72 (341)
T ss_pred CCEEEEECCcchHh--HHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence 78999999999998 599999999853 25678999999999999999987643 1457899999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
++|+.+.. ..+++|+++++.+.- -++++.+|+|+|+||++|+.+++.+|+++|+++.+++++++ +.+++.++++
T Consensus 73 ~~L~~~~~---~~~~~l~~~~~~~~~--~~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a 146 (341)
T PRK08373 73 KRLGIDLE---ILSPYLKKLFNSRPD--LPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNA 146 (341)
T ss_pred HHhccchh---hHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccce
Confidence 99987653 344556666665332 24578899999999999999999999999999999999998 8888888888
Q ss_pred eeec-cchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCC
Q 018295 240 DILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (358)
Q Consensus 240 ~i~~-~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~ 318 (358)
++.. .+...+ +.+ ..+++.+.|||++||+| + .+|.++|+||||||++|++||.+|+|++++|||||||||++||+
T Consensus 147 ~i~~~~s~~~~-~~l-~~~l~~g~VpVv~Gf~g-~-~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~ 222 (341)
T PRK08373 147 FIDIKKSKRNV-KIL-YELLERGRVPVVPGFIG-N-LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222 (341)
T ss_pred eechhhhhhhH-HHH-HHHHhCCcEEEEeCCcc-C-CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCC
Confidence 7621 111111 122 22346789999999999 6 58999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHh
Q 018295 319 IHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIEL 355 (358)
Q Consensus 319 ~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~ 355 (358)
++|+|+++++|||+||.||+++||+|+||+|++++..
T Consensus 223 ~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~ 259 (341)
T PRK08373 223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG 259 (341)
T ss_pred CCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc
Confidence 9999999999999999999999999999999999976
No 17
>PRK09181 aspartate kinase; Validated
Probab=100.00 E-value=4.9e-55 Score=445.90 Aligned_cols=261 Identities=25% Similarity=0.283 Sum_probs=211.7
Q ss_pred CceEEEEeCccccCCHHHHHHHHH-HHHcCC----CCCcEEEEcCCCcCchHHHHHhHH-------HHhcCCCccchHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAE-LILSFP----NERPVIVLSAMGKTTNKLLLAGEK-------AVSCGVTNISCIDE 147 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~-iI~~~~----~~~~vVVVSA~gg~Td~Ll~~~~~-------a~~~~~~~~~~~~~ 147 (358)
|+.+|+||||||| +++++|.+ |+.... ..+++||||||||+||.|+++++. ++..+ .++++.+.
T Consensus 2 ~~~~V~KFGGtSv---~~~~~v~~~iv~~~~~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (475)
T PRK09181 2 MMHTVEKIGGTSM---SAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLEHKKTGEPGVYALFAKA-NDEAWREA 77 (475)
T ss_pred CceEEEEECCCcH---HHHHHHHhheEeccccccCCCCeEEEEeCCCcchHHHHHhHhhcchhHHHHHHHh-cCccHHHH
Confidence 4569999999999 56677777 554431 257899999999999999987641 12110 23567888
Q ss_pred HHHHHHHHHHHHHHhCCCH-------HH-------HHHHHHHHHHHHH-HhhhhccCCHHHHHHHHHhHHHHHHHHHHHH
Q 018295 148 LSFVKDLHHRTVDELGIDR-------SI-------IATHLEELEQLLK-GIAMLKELTPRSRDYLVSFGECMSTRIFAAY 212 (358)
Q Consensus 148 l~~i~~~~~~~~~~L~~~~-------~~-------i~~~~~~L~~ll~-gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~ 212 (358)
++.|+++|..++++|..+. +. +..+|.++++++. ++.++++++++.+|+++|+||+||+.||+.+
T Consensus 78 l~~i~~~~~~i~~~L~~~~~~~~~~~~~i~~~~~~~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~ 157 (475)
T PRK09181 78 LEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALL 157 (475)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHH
Confidence 9999999999999997432 12 3667777777777 8888999999999999999999999999999
Q ss_pred HHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHH
Q 018295 213 LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292 (358)
Q Consensus 213 L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa 292 (358)
|+++|++|.++|+..+ ..++ ... ..+++.+.+.. |...+.|||+|||++ + .+|+++|||||||||||+
T Consensus 158 L~~~Gi~a~~ld~~~~--~~~~------~~~-~~~~i~~~l~~-~~~~~~v~Vv~GF~~-~-~~G~itTLGRGGSDyTAa 225 (475)
T PRK09181 158 LQNRGVNARFVDLTGW--DDDD------PLT-LDERIKKAFKD-IDVTKELPIVTGYAK-C-KEGLMRTFDRGYSEMTFS 225 (475)
T ss_pred HHhCCCCeEEeccccc--cCCc------ccc-hHHHHHHHHhh-hccCCcEEEecCCcC-C-CCCCEEecCCChHHHHHH
Confidence 9999999999987643 2111 111 23445554432 123567999999975 4 479999999999999999
Q ss_pred HHHHHcCCceEEEeecCCccccCCCCCC--CCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 293 TIGKALGLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 293 ~LA~aL~A~~l~i~TDVdGVytaDP~~v--~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+||++|+|++++|||||+ |||+|||++ |+|++|++|||+||.||||+|||||||+||+|+.+.+
T Consensus 226 ilAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~ 291 (475)
T PRK09181 226 RIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAG 291 (475)
T ss_pred HHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcC
Confidence 999999999999999997 999999999 6999999999999999999999999999999998764
No 18
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=7.5e-54 Score=462.13 Aligned_cols=266 Identities=30% Similarity=0.467 Sum_probs=232.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
|+|+|||||||++++++++|+++|.+.. ..++|||||||+|+||.|+++++.+.+. +..+...++.++++|. +++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vVVVSA~~~vTd~L~~~~~~~~~~---~~~~~~~~~~~~~~h~-~~~ 76 (819)
T PRK09436 1 MRVLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAAKG---DDAYPEILDAERIFHE-LLD 76 (819)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhcccCCEEEEEcCCcCcHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH-HHH
Confidence 7899999999999999999999998753 3688999999999999999998877642 2345667888898884 333
Q ss_pred HhC---CC------HHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 161 ELG---ID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 161 ~L~---~~------~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
.|. .. .+.|.++|++|+++++++.++++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ ++
T Consensus 77 ~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~ 155 (819)
T PRK09436 77 GLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPREL-LL 155 (819)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHe-EE
Confidence 331 11 146889999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eeCCCCCceee-ccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 232 TTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 232 t~~~~~~a~i~-~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+++.++++.+. +.+.+.+++.+ .+.+.|||+|||+|.+ .+|+++||||||||++|+++|.+|+|+++++|||||
T Consensus 156 t~~~~~~~~~~~~~~~~~i~~~~----~~~~~v~Vv~Gfig~~-~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVd 230 (819)
T PRK09436 156 ADGHYLESTVDIAESTRRIAASF----IPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVD 230 (819)
T ss_pred ecCCCCCceechHhhHHHHHHHH----hcCCcEEEecCcccCC-CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCC
Confidence 88888887763 33333344332 3457899999999998 699999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||||+||+++|+|+++++|||+||.+|+++|++|+||+|++++.+.+
T Consensus 231 Gvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~ 277 (819)
T PRK09436 231 GVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQ 277 (819)
T ss_pred ceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999865
No 19
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=100.00 E-value=5e-53 Score=412.54 Aligned_cols=249 Identities=32% Similarity=0.501 Sum_probs=210.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
|+|+|||||||+++ +++++++|.... +.+++||||||+|+||.|+++++.+ ..+.++.++++|.++++
T Consensus 1 m~V~KFGGsSv~~~--~~~v~~ii~~~~~~~~~vVVVSA~~gvTd~L~~~~~~~---------~~~~l~~i~~~h~~~~~ 69 (327)
T TIGR02078 1 MIVVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTF---------DKSAALEIEEIYEEFAK 69 (327)
T ss_pred CEEEEECCcchHHH--HHHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 68999999999986 999999998642 4578999999999999999986432 13568899999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCce
Q 018295 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (358)
Q Consensus 161 ~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~ 240 (358)
+|+.+.+.+.+.++++.+. .. -+++..+|+|+|+||++|+.|++. |+++.+++++++ +++++.++++.
T Consensus 70 ~L~~~~~~~~~~l~~~~~~---~~---l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~ 137 (327)
T TIGR02078 70 ELGVDLNILSPYLKELFNP---PD---LPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAF 137 (327)
T ss_pred HhccchhhhHHHHHHHHhh---hc---cCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCcee
Confidence 9998765555555555443 11 245678999999999999999886 899999999998 88888888887
Q ss_pred ee-ccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 241 IL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 241 i~-~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
+. +.+...++. +. .+++.+.|||++||+| + .+|.++|+||||||++|+++|.+|+|+.+++||||||||++||++
T Consensus 138 ~~~~~~~~~~~~-l~-~~l~~g~IpVv~Gf~~-~-~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~ 213 (327)
T TIGR02078 138 IDIKKSKRNAKI-LY-EVLESGKIPVIPGFYG-N-LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213 (327)
T ss_pred echhhhHhhHHH-HH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCc
Confidence 74 222222222 22 2346788999999999 6 589999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|+|+++++|||+||.+++++|++++||+|++++++++
T Consensus 214 v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~ 251 (327)
T TIGR02078 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYK 251 (327)
T ss_pred CCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999865
No 20
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=100.00 E-value=1.3e-52 Score=403.29 Aligned_cols=258 Identities=24% Similarity=0.287 Sum_probs=206.1
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHHhHH-------HHhcCCCccchHHHHHHHHH
Q 018295 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEK-------AVSCGVTNISCIDELSFVKD 153 (358)
Q Consensus 83 ~V~KFGGSSl~s~e~i~~Va~iI~~~~~--~~~vVVVSA~gg~Td~Ll~~~~~-------a~~~~~~~~~~~~~l~~i~~ 153 (358)
.|+|||||||++.+.++. +||...+. .++|+||||.+|+||+|++.-.. ++.. .+..|.+.|+.+.+
T Consensus 2 ~V~K~GGTSms~~~~~~d--~i~~~~~~~~~~rv~VVSA~~gvT~~Lle~k~t~~~gv~~~~~~--~~~~~~~al~~~~~ 77 (304)
T cd04248 2 TVEKIGGTSMSAFGAVLD--NIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTGAPGIYQHFVD--ADEAWREALSALKQ 77 (304)
T ss_pred ceeeecCcccccHHHHhh--hHhcCCcccCccEEEEEECCccchHHHHHhhhcCCcchhHHHhc--CchHHHHHHHHHHH
Confidence 699999999999988888 77763222 36899999999999999984221 1111 23447888999999
Q ss_pred HHHHHHHHhCCC-------HHHHHHHHHHHHH-------HH-HHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Q 018295 154 LHHRTVDELGID-------RSIIATHLEELEQ-------LL-KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (358)
Q Consensus 154 ~~~~~~~~L~~~-------~~~i~~~~~~L~~-------ll-~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi 218 (358)
+|.++..+|..+ .++|.+.+++++. ++ .|+..+++++++.+|+|+|+||++|+.+++.+|++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~a~~~i~~r~~~~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi 157 (304)
T cd04248 78 AMLKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGV 157 (304)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCC
Confidence 999988877643 1345555444443 33 46667889999999999999999999999999999999
Q ss_pred ceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHc
Q 018295 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKAL 298 (358)
Q Consensus 219 ~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL 298 (358)
+|.++|...+ ...+.+. ..+.+.+.+.. +...+.|||++||.+ + .+|+++|||||||||||++||.+|
T Consensus 158 ~A~~vD~~~~--~~~~~~t-------~~~~i~~~~~~-~~~~~~v~IvtGF~~-~-~~G~itTLGRGGSDyTAs~iAa~l 225 (304)
T cd04248 158 NARFVDLSGW--RDSGDMT-------LDERISEAFRD-IDPRDELPIVTGYAK-C-AEGLMREFDRGYSEMTFSRIAVLT 225 (304)
T ss_pred CeEEECcccc--cccCCCC-------cHHHHHHHHHh-hccCCcEEEeCCccC-C-CCCCEEEcCCCcHHHHHHHHHHHc
Confidence 9999988753 2211111 12345554432 223567999999954 5 489999999999999999999999
Q ss_pred CCceEEEeecCCccccCCCCCC--CCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 299 GLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 299 ~A~~l~i~TDVdGVytaDP~~v--~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|++++|||||+ |||+|||++ ++|++|++|||+||.|||++|||||||+|++++++.+
T Consensus 226 ~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~ 285 (304)
T cd04248 226 GASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAG 285 (304)
T ss_pred CCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcC
Confidence 999999999996 999999999 5899999999999999999999999999999998764
No 21
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=9.1e-53 Score=456.72 Aligned_cols=274 Identities=26% Similarity=0.400 Sum_probs=233.7
Q ss_pred CCCCceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHH
Q 018295 77 SEKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (358)
Q Consensus 77 ~~~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (358)
+..|.|+|+|||||||+|++++++|+++|++. .++++|||||||+|+||+|++++..+.+ .++.+.++.|+++
T Consensus 4 ~~~~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~-----~~~~~~~~~i~~~ 78 (861)
T PRK08961 4 PSTDRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGA-----GDSASRVAAIRQR 78 (861)
T ss_pred CCCCCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhc-----cCHHHHHHHHHHH
Confidence 34578999999999999999999999999853 2468899999999999999998765443 3567889999999
Q ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEee
Q 018295 155 HHRTVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (358)
Q Consensus 155 ~~~~~~~L~~~~~-~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~ 233 (358)
|..++++|+.+.+ .+.+.+++|+++++++..+++++++.+|+++|+||++|+.||+.+|+++|+++.++|++++ ++++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-~~~~ 157 (861)
T PRK08961 79 HRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW-LTAL 157 (861)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh-Eeec
Confidence 9999999976643 6889999999999999999999999999999999999999999999999999999999998 5555
Q ss_pred CCC-C--Cceeeccch-HHHHHHHhhchhcC-CceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeec
Q 018295 234 DDF-T--NADILEATY-PAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (358)
Q Consensus 234 ~~~-~--~a~i~~~~~-~~i~~~l~~~ll~~-~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TD 308 (358)
+++ . ......... ......+...+... +.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~-~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~td 236 (861)
T PRK08961 158 PQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARN-ADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTD 236 (861)
T ss_pred CccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeC-CCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeC
Confidence 521 1 111111100 11222232222333 3599999999999 5899999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 309 VdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||||||+||+++|+|+++++|||+||.||+++|++|+||+|++++++.+
T Consensus 237 v~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~ 285 (861)
T PRK08961 237 VPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAG 285 (861)
T ss_pred CCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999875
No 22
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=100.00 E-value=5.7e-52 Score=420.87 Aligned_cols=260 Identities=35% Similarity=0.515 Sum_probs=220.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
+|+|+|||||||+|++++++++++|.... +.++|||||||+++||.|++++..+... ...+.++.++++|.++
T Consensus 1 ~~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-----~~~~~~~~i~~~~~~~ 75 (441)
T TIGR00657 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPG-----PSKEFLEKIREKHIEI 75 (441)
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHH
Confidence 57999999999999999999999998642 4588999999999999999998776532 1256789999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
+++|. +. . ..++++++++.+.. ...+++.+|+|+|+||++|+.+++++|+++|++++++++.+.++++++++++
T Consensus 76 ~~~l~-~~-~---~~~~~~~~~~~~~~-~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~ 149 (441)
T TIGR00657 76 LERLI-PQ-A---IAEELKRLLDAELV-LEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGR 149 (441)
T ss_pred HHHhh-hH-H---HHHHHHHHHHHHHh-hhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCc
Confidence 99997 32 2 23334444443321 1223678899999999999999999999999999999999998999988877
Q ss_pred ce-eeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 239 AD-ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 239 a~-i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
+. +.+.+.+.+.+ +++.+.|||++||+|.+ .+|+++++||||||++|+.+|.+|+|+++++||||||||++||
T Consensus 150 ~~~~~~~~~~~l~~-----~l~~~~vpVv~G~~g~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP 223 (441)
T TIGR00657 150 ARVIIEILTERLEP-----LLEEGIIPVVAGFQGAT-EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223 (441)
T ss_pred eeecHhhhHHHHHH-----HHhcCCEEEEeCcEeeC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 65 33333333333 34678899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+++|+++++++|||+||.+|+++|++++||+|++++.+.+
T Consensus 224 ~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~ 263 (441)
T TIGR00657 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAK 263 (441)
T ss_pred CCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998764
No 23
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=2.1e-49 Score=396.50 Aligned_cols=221 Identities=35% Similarity=0.498 Sum_probs=193.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
|.|+|+|||||||+|++.+++++++|... .+.++||||||++++||.|++.+..
T Consensus 1 m~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~------------------------ 56 (392)
T PRK08841 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQ------------------------ 56 (392)
T ss_pred CCeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhh------------------------
Confidence 45899999999999999999999999853 3467899999999999999874320
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
.. ...+++.+|.++++||++|+.|++.+|+++|+++.++++.+.++++++.++
T Consensus 57 ----~~-----------------------~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~ 109 (392)
T PRK08841 57 ----VD-----------------------SVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHN 109 (392)
T ss_pred ----hc-----------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCC
Confidence 00 012456789999999999999999999999999999999998889988887
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
++++...+...+.+ +++.+.|||++||+|.+ ++|+++|+||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 110 ~~~i~~~~~~~i~~-----ll~~~~vpVv~Gf~g~~-~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP 183 (392)
T PRK08841 110 DATIKHIDTSTITE-----LLEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183 (392)
T ss_pred CceechhhHHHHHH-----HHhCCCEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCC
Confidence 77775544444433 34677899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+++|+|+++++|||+||.||+++|++|+||+|++++++.+
T Consensus 184 ~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~ 223 (392)
T PRK08841 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHS 223 (392)
T ss_pred CCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999865
No 24
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=1.6e-45 Score=369.06 Aligned_cols=221 Identities=38% Similarity=0.543 Sum_probs=194.2
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
|++|+|||||+|.+++.+++++++|+.. .+.++||||||++++|+.|++.++...+
T Consensus 1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~---------------------- 58 (401)
T TIGR00656 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR---------------------- 58 (401)
T ss_pred CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhc----------------------
Confidence 4689999999999999999999999854 2468899999999999999876431100
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
...++...|+++++||++|+.+++.+|+++|+++.++++.+.++++++.+++
T Consensus 59 ----------------------------~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~ 110 (401)
T TIGR00656 59 ----------------------------DAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110 (401)
T ss_pred ----------------------------cCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCc
Confidence 1235667899999999999999999999999999999999988999988887
Q ss_pred ceeeccch-HHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 239 a~i~~~~~-~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
+++.+... +.+.+ +++.+.|||++||+|.+ .+|+++++||||||++|+.+|.+|+|+++++|||||||||+||
T Consensus 111 ~~~~~~~~~~~l~~-----~l~~~~vpVi~g~~~~~-~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP 184 (401)
T TIGR00656 111 AKIDIIATEERLLP-----LLEEGIIVVVAGFQGAT-EKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDP 184 (401)
T ss_pred eEeeecchHHHHHH-----HHhCCCEEEecCcceeC-CCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 77755444 43433 24678999999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+++|+|+++++|||+||.+|+++|++|+||+|++++++++
T Consensus 185 ~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~ 224 (401)
T TIGR00656 185 RVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSG 224 (401)
T ss_pred CCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999865
No 25
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=8.2e-44 Score=331.97 Aligned_cols=206 Identities=45% Similarity=0.746 Sum_probs=179.0
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~-~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
|+|+||||||+.+++.+++++++|... .+.++|||+||++++|+.|++..
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~----------------------------- 51 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA----------------------------- 51 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH-----------------------------
Confidence 689999999999999999999999874 24678999999999999887531
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCce
Q 018295 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (358)
Q Consensus 161 ~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~ 240 (358)
.++++||.+|+.+++.+|+++|+++.++++.++++.+++.+...+
T Consensus 52 -----------------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~ 96 (227)
T cd04234 52 -----------------------------------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAAR 96 (227)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhh
Confidence 578999999999999999999999999999998554443322233
Q ss_pred eeccchHHHHHHHhhchhcC-CceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 241 ILEATYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 241 i~~~~~~~i~~~l~~~ll~~-~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
+.+.+...+.+ +++. +.|||++||+|.+ ++|+++++||||+|++|+.+|.+|+|+++++|||||||||+||+.
T Consensus 97 ~~~~~~~~l~~-----~l~~~~~vpVv~g~i~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 97 IIEISYERLKE-----LLAEIGKVPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred HHHHHHHHHHH-----HHhhCCCEEEecCceecC-CCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 33333333333 3466 8999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|+++++++|||+|+.+|+++|++++||+|++++.+++
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~ 208 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKAN 208 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999875
No 26
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=1.4e-43 Score=355.28 Aligned_cols=221 Identities=36% Similarity=0.531 Sum_probs=194.4
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
|+++|+|||||++.+++.++++++.|.... +.++||||||++++||.|++......
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~---------------------- 58 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS---------------------- 58 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc----------------------
Confidence 457999999999999999999999998642 45789999999999999987532100
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
...++..+|.++++||++|+.+++.+|+++|+++.++++.+++++++++++
T Consensus 59 -----------------------------~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~ 109 (404)
T PRK06635 59 -----------------------------PLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHG 109 (404)
T ss_pred -----------------------------cCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCC
Confidence 011456778999999999999999999999999999999999888888888
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
++++...+.+.+... ++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 110 ~~~~~~~~~~~l~~~-----l~~~~ipVi~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP 183 (404)
T PRK06635 110 KARITDIDPSRIREA-----LDEGDVVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDP 183 (404)
T ss_pred ceEeeecCHHHHHHH-----HhCCCEEEecCccEeC-CCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCC
Confidence 888766555555543 3678999999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 318 NIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+++|+++++++|||+|+.+|+++|++++||+|++++++.+
T Consensus 184 ~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~ 223 (404)
T PRK06635 184 RIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYN 223 (404)
T ss_pred CCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999875
No 27
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=2.9e-43 Score=330.39 Aligned_cols=219 Identities=36% Similarity=0.538 Sum_probs=191.6
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
++|+||||+++.|++.++++++.|.... +.++|||+||+++.|++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------------------------ 56 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------------------------ 56 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------------------------
Confidence 4799999999999999999999998643 45788999999999999987532110
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
...+...++.++++||++|+.+++..|+++|++++++++.++++++.++++++
T Consensus 57 ---------------------------~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04261 57 ---------------------------PRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcc
Confidence 02245677889999999999999999999999999999999888888888777
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
++...+.+.+.. +++++.|||++||+|.+ ++|.+++++||++|++|+.+|.+|+|+++++||||||||++||+.
T Consensus 110 ~i~~~~~~~l~~-----ll~~~~ipVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~ 183 (239)
T cd04261 110 RIIDIDPDRIRE-----LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHHcCCeEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCC
Confidence 775554444443 34678999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|+++++++|+|+|+.+|+++|++++||+|++++++.+
T Consensus 184 ~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~ 221 (239)
T cd04261 184 VPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYG 221 (239)
T ss_pred CCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999875
No 28
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=2.1e-43 Score=354.33 Aligned_cols=221 Identities=35% Similarity=0.546 Sum_probs=189.9
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCc-----CchHHHHHhHHHHhcCCCccchHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGK-----TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg-----~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (358)
|.++|+|||||++.+.+.++++++.|... .+.++|||+||+|+ +|+.|+.......
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~----------------- 63 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF----------------- 63 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----------------
Confidence 45799999999999999999999888753 24577999999876 5887765321100
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEe
Q 018295 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (358)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit 232 (358)
...++..+|.++++||.+|+.+++++|+++|+++.++++.+.++++
T Consensus 64 ----------------------------------~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t 109 (403)
T PRK08210 64 ----------------------------------SEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIIT 109 (403)
T ss_pred ----------------------------------cCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEc
Confidence 1234567788999999999999999999999999999999988999
Q ss_pred eCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
+++++++++...+.+.+... ++.+.|||++||+|.+ .+|+++|+||||||++|+.||.+|+|++++||||||||
T Consensus 110 ~~~~~~~~v~~~~~~~l~~~-----l~~~~vpVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV 183 (403)
T PRK08210 110 DDNFTNAKIIEVNPDRILEA-----LEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGI 183 (403)
T ss_pred cCCCCceeeehhhHHHHHHH-----HhcCCEEEeeCeeecC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 98887777655444444433 4678899999999988 58999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|++||+++|+++++++|||+||.+|+++|++|+||+|++++.+.+
T Consensus 184 ~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~ 228 (403)
T PRK08210 184 MTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQAN 228 (403)
T ss_pred CcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999998764
No 29
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=4.3e-43 Score=329.07 Aligned_cols=219 Identities=36% Similarity=0.549 Sum_probs=191.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
|+|+||||+++.|++.++++++.|.... +.++|||+||+++.+++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~------------------------ 56 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVS------------------------ 56 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhc------------------------
Confidence 6899999999999999999999998643 46788999999999999987532100
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
...+...++.++++||++|+.+++..|+++|++++++++.+.++++.+.++++
T Consensus 57 ---------------------------~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04246 57 ---------------------------PRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCce
Confidence 01145667889999999999999999999999999999999878888888777
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
++...+...+.+ +++++.|||++||+|.+ .+|.+++++||++|++|+.+|.+|+|+++++||||||||++||+.
T Consensus 110 ~~~~~~~~~l~~-----ll~~g~ipVi~g~~~~~-~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~ 183 (239)
T cd04246 110 RIIDIDPKRILE-----ALEEGDVVVVAGFQGVN-EDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHhcCCEEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCC
Confidence 775554444443 34678999999999988 589999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|+++++++|+|+|+.+|+++|++++||+|++++.+++
T Consensus 184 ~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~g 221 (239)
T cd04246 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYN 221 (239)
T ss_pred CCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999875
No 30
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=4.5e-43 Score=367.29 Aligned_cols=222 Identities=34% Similarity=0.496 Sum_probs=193.2
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
|.|+|+|||||||+|++.+++++++|... .+.++|||+||+|++||+|++.+...
T Consensus 1 m~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~----------------------- 57 (587)
T PRK07431 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEI----------------------- 57 (587)
T ss_pred CCeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHh-----------------------
Confidence 45899999999999999999999999864 24578999999999999998643110
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
..+.+....|.++++||.+|+.|++.+|+++|++++++++.++++++++.++
T Consensus 58 ----------------------------t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~ 109 (587)
T PRK07431 58 ----------------------------SSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHG 109 (587)
T ss_pred ----------------------------ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCC
Confidence 0123456779999999999999999999999999999999999888888877
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccC-CCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCC
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~-~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaD 316 (358)
.+++...+.+.+.+. ++.+.|||++||+|.+. .+|+++|+||||||++|++||.+|+|+++++||||||||++|
T Consensus 110 ~~~i~~~~~~~l~~~-----l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~D 184 (587)
T PRK07431 110 RARILEIKTDRIQRH-----LDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTD 184 (587)
T ss_pred ceeeeeccHHHHHHH-----HhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCC
Confidence 777766655555543 36789999999998742 238899999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 317 P~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|+++|+|+++++|+|+|+.+|+++|++++||+|++++.+++
T Consensus 185 P~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~ 225 (587)
T PRK07431 185 PRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYG 225 (587)
T ss_pred CCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999865
No 31
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=1.3e-42 Score=327.20 Aligned_cols=219 Identities=32% Similarity=0.545 Sum_probs=187.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcC-----chHHHHHhHHHHhcCCCccchHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKT-----TNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~-----Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (358)
.+|+|||||++.|++.++++++.|.... +.++|||+||+|+. |+.|++...
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~---------------------- 58 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVY---------------------- 58 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHH----------------------
Confidence 3799999999999999999999998642 34789999998773 444432110
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC
Q 018295 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (358)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~ 234 (358)
..+ ...++..++.++++||.+++.+++.+|+++|+++.++++.+.++++.+
T Consensus 59 ------~~~-----------------------~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~ 109 (244)
T cd04260 59 ------AEN-----------------------SDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDD 109 (244)
T ss_pred ------hhc-----------------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecC
Confidence 001 123556788999999999999999999999999999999999899988
Q ss_pred CCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
.++++++...+.+.+.+. ++.+.|||++||+|.+ .+|++++++|||+|++|+.||.+|+|+++++||||||||+
T Consensus 110 ~~~~~~v~~~~~~~l~~l-----l~~g~VPVv~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~ 183 (244)
T cd04260 110 NYSNAKIIKVNPKKILSA-----LKEGDVVVVAGFQGVT-EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMT 183 (244)
T ss_pred CCCceeeeccCHHHHHHH-----HhCCCEEEecCCcccC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCc
Confidence 887777655555554433 4678999999999998 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+||+.+|++++|++|+|+|+.+|+++|++++||+|++++.+.+
T Consensus 184 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~ 226 (244)
T cd04260 184 ADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQAN 226 (244)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999998764
No 32
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=4.1e-34 Score=267.42 Aligned_cols=219 Identities=37% Similarity=0.525 Sum_probs=181.9
Q ss_pred EEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 018295 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (358)
Q Consensus 84 V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (358)
|+||||+++.+.+.++++++.|+.. .+.+.|+|+||++..++.+.+.....
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~--------------------------- 53 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL--------------------------- 53 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhh---------------------------
Confidence 7899999999999999999999874 24678899999999999887643211
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC-ce
Q 018295 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN-AD 240 (358)
Q Consensus 162 L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~-a~ 240 (358)
.+.++ ...+....+.++++||.+++.++.++|+++|+++.++++.+..+.+. +++. ++
T Consensus 54 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-~~~~~g~ 112 (248)
T cd02115 54 ----------------GYARG----LRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASP-NQGHVGK 112 (248)
T ss_pred ----------------hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeC-CCCCccc
Confidence 00010 13456778899999999999999999999999999999999855443 4433 44
Q ss_pred eeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCC
Q 018295 241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320 (358)
Q Consensus 241 i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v 320 (358)
+...+.+.+.+. ++.+.|||++||.+.+. + +..+++|++||++|+.+|.+|+|++++|||||||||++||+++
T Consensus 113 ~~~~~~~~l~~~-----l~~~~ipVv~g~~~~~~-~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~ 185 (248)
T cd02115 113 ITKVSTDRLKSL-----LENGILPILSGFGGTDE-K-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKV 185 (248)
T ss_pred ceeeCHHHHHHH-----HhCCcEEEecCeEeccC-C-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcC
Confidence 445555555544 36789999999998763 4 6788999999999999999999999999999999999999999
Q ss_pred CCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 321 PHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 321 ~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|+++++++|||+|+.+|+++|+.++||+++.++.+.+
T Consensus 186 ~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~ 222 (248)
T cd02115 186 PDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAG 222 (248)
T ss_pred CcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999987653
No 33
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.98 E-value=6.3e-33 Score=258.51 Aligned_cols=225 Identities=32% Similarity=0.388 Sum_probs=172.1
Q ss_pred ceEEEEeCccccCCH--HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASA--ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~--e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
+++|+||||+++.+. + ++++++.|.... .+.++||||++|+.+|.+++.....-.. .. ..+|..
T Consensus 1 k~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~-------~~-----~~r~~~ 67 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKF-------VD-----GSRVTD 67 (242)
T ss_dssp SEEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSE-------ET-----HHCHBH
T ss_pred CeEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCccc-------ch-----hhhhhh
Confidence 578999999999998 7 999999998532 3566799999999999998763211100 00 011111
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
....+... .....+|.+ ....+.++++|+.+++.++...+.+.|+.+...++..
T Consensus 68 ~~~~~~~~----~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 121 (242)
T PF00696_consen 68 IETGLIIT----MAAAAELNR------------DALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDARE---------- 121 (242)
T ss_dssp HHHHHHHH----HHHHHHHHH------------HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSE----------
T ss_pred hhhhHHHH----HHHhhcccc------------chhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhh----------
Confidence 11111000 000111111 4677889999999999999999999888877765441
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCC
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP 317 (358)
.+.+.+.+. ++++.|||++||.+.+ .+|++++++++++|++|+.||.+|+|++++|||||||||++||
T Consensus 122 ------~~~~~i~~~-----l~~~~ipVv~g~~~~~-~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP 189 (242)
T PF00696_consen 122 ------VDKEAIREL-----LEQGIIPVVSGFAGID-DDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADP 189 (242)
T ss_dssp ------EHHHHHHHH-----HHTTSEEEEESEEEEE-TTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSST
T ss_pred ------hHHHHHHHH-----HHCCCEEEEeCCcccC-CCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCC
Confidence 122334443 3568999999999888 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcCHHHHHHHH------HCCCCcccHhhHHHHHhc
Q 018295 318 NIHPHAKPVPYLTFDEAAELA------YFGAQVYIFEAVNVIELC 356 (358)
Q Consensus 318 ~~v~~Ak~i~~Lsy~EA~eLa------~~GakVLHP~ai~~a~~~ 356 (358)
+.+|+++++++|||+|+.+|+ ++|++++||.|+++++..
T Consensus 190 ~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~ 234 (242)
T PF00696_consen 190 RIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEG 234 (242)
T ss_dssp TTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999 999999999999999874
No 34
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=3e-28 Score=232.56 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=159.5
Q ss_pred CCceEEEEeCccccC------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 79 KQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~------s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
.+.++|+||||||+. +.+.++++++.|.... +.+.|+|+||+++.+..++....
T Consensus 8 ~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~------------------ 69 (266)
T PRK12314 8 NAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK------------------ 69 (266)
T ss_pred hCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecccc------------------
Confidence 357899999999999 7899999999998532 34566778988888776653210
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
.+ .+...++.+++.||.++..++..+|+++|+++ .++ +
T Consensus 70 -------------~~-----------------------~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-l 107 (266)
T PRK12314 70 -------------RP-----------------------TSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-L 107 (266)
T ss_pred -------------CC-----------------------CCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-E
Confidence 00 01233578899999999999999999999974 455 7
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC----CCcchHHHHHHHHHcCCceEEEe
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG----RGGSDLTATTIGKALGLQEIQVW 306 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg----RgGSD~tAa~LA~aL~A~~l~i~ 306 (358)
+|.++|.+.+.. ......+ ..+++.+.|||+.+ ++.+++.+ +|++|++|+.||.+|+|+.++||
T Consensus 108 lT~~~~~~~~~~----~~~~~~l-~~ll~~g~IPVv~~-------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liil 175 (266)
T PRK12314 108 LTRDDFDSPKSR----ANVKNTF-ESLLELGILPIVNE-------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIIL 175 (266)
T ss_pred EecccccchHHH----HHHHHHH-HHHHHCCCEEEEcC-------CCCeeeccccceecchHHHHHHHHHHhCCCEEEEE
Confidence 888888765542 2233333 33457889999964 34455555 89999999999999999999999
Q ss_pred ecCCccccCCCCCCCCCcccCCcCH--HHHHHHHHC-------CCCcccHhhHHHHHhcc
Q 018295 307 KDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAYF-------GAQVYIFEAVNVIELCK 357 (358)
Q Consensus 307 TDVdGVytaDP~~v~~Ak~i~~Lsy--~EA~eLa~~-------GakVLHP~ai~~a~~~~ 357 (358)
|||||||++||+.+|+|++|+.|++ .|..+++.. |..+.|+++...+.+.+
T Consensus 176 TDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~g 235 (266)
T PRK12314 176 SDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAG 235 (266)
T ss_pred eCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999987 666666543 57899999998886653
No 35
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.95 E-value=9.3e-28 Score=227.10 Aligned_cols=202 Identities=22% Similarity=0.350 Sum_probs=152.7
Q ss_pred EEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHH
Q 018295 83 CVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (358)
Q Consensus 83 ~V~KFGGSSl~s~e------~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (358)
+|+|||||++.+.+ .++++++.|.... +.+.|+|+||+++.+...+
T Consensus 2 iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~-------------------------- 55 (251)
T cd04242 2 IVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRL-------------------------- 55 (251)
T ss_pred EEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhh--------------------------
Confidence 79999999999876 8999999998542 3456677788776652211
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC
Q 018295 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (358)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~ 234 (358)
+.... ......++.+++.||..+..+++.+|+++|+++.. + +++++
T Consensus 56 --------~~~~~--------------------~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~q-----~-l~t~~ 101 (251)
T cd04242 56 --------GLEKR--------------------PKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVAQ-----I-LLTRD 101 (251)
T ss_pred --------ccCcC--------------------CCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEEE-----E-EEehh
Confidence 10000 00113447889999999999999999999999643 3 67777
Q ss_pred CCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEe--eCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
++.++.. +..... ....+++.+.|||+.+ ++.+++ +++|++|++|+.||.+|+|++++||||||||
T Consensus 102 ~~~~~~~----~~~~~~-~i~~ll~~g~iPVv~~-------~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGv 169 (251)
T cd04242 102 DFEDRKR----YLNARN-TLETLLELGVIPIINE-------NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGL 169 (251)
T ss_pred HhcchHH----HHHHHH-HHHHHHHCCCEEEEcC-------CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEE
Confidence 7755432 112222 2334467889999964 344555 7899999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcC--HHHHHHHH-----HCCCCcccH--hhHHHHHhc
Q 018295 313 LTCDPNIHPHAKPVPYLT--FDEAAELA-----YFGAQVYIF--EAVNVIELC 356 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Ls--y~EA~eLa-----~~GakVLHP--~ai~~a~~~ 356 (358)
|++||+.+|++++|++++ ++|+.+++ .+|...+|| ++...+.+.
T Consensus 170 y~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~ 222 (251)
T cd04242 170 YDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEA 222 (251)
T ss_pred EeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHC
Confidence 999999999999999999 99999996 789999999 555555443
No 36
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.95 E-value=3.3e-27 Score=220.30 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=146.0
Q ss_pred EEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHH
Q 018295 83 CVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (358)
Q Consensus 83 ~V~KFGGSSl~s------~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (358)
+|+|||||++.+ .+.++++++.|.+.. +.+.|||+|| |...+....
T Consensus 2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~gg-G~~a~~~~~------------------------- 55 (229)
T cd04239 2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIA------------------------- 55 (229)
T ss_pred EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-ChHHhhHHH-------------------------
Confidence 799999999988 789999999998542 2344556655 433232110
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC
Q 018295 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (358)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~ 234 (358)
..++ .++...|++.+.||++|+.+|+.+|+++|+++.++++.++..++.
T Consensus 56 -----~~~~-------------------------~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~- 104 (229)
T cd04239 56 -----AARG-------------------------MPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE- 104 (229)
T ss_pred -----hhcC-------------------------CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc-
Confidence 0011 112345778889999999999999999999999999987532211
Q ss_pred CCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
..+.+.+.. +++.+.|||++||.|.. . +.+|++|+.+|.+|+|+++++||||||||+
T Consensus 105 --------~~~~~~l~~-----~l~~g~ipVi~g~~g~~--~--------~~sD~~A~~lA~~l~a~~li~~tdVdGvy~ 161 (229)
T cd04239 105 --------PYIRRRAIR-----HLEKGRIVIFGGGTGNP--G--------FTTDTAAALRAEEIGADVLLKATNVDGVYD 161 (229)
T ss_pred --------cccHHHHHH-----HHhCCCEEEEeCccCCC--C--------CCcHHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 112222332 34678999999988643 1 138999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+||+.+|++++|++|+|+|+.+++. +++||.+++++.+.+
T Consensus 162 ~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~~~~ 201 (229)
T cd04239 162 ADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCRRNK 201 (229)
T ss_pred CCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHHHCC
Confidence 9999999999999999999998875 899999999887754
No 37
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.95 E-value=5.5e-27 Score=218.88 Aligned_cols=194 Identities=22% Similarity=0.264 Sum_probs=142.9
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 81 ~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
+++|+|||||++. +.+.++++++.|.+.. +.+.|+|+| .|.....
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~g-GG~~a~~------------------------- 54 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVG-GGNIFRG------------------------- 54 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC-CCHHHHH-------------------------
Confidence 4689999999997 6789999999998643 234455555 3322110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
|... .++. +....|.+.++++++|+.+|+..|+++|+++..+++.+.+.+
T Consensus 55 ---~~~~--~~~~-------------------------~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~ 104 (231)
T PRK00358 55 ---YIGA--AAGM-------------------------DRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQV 104 (231)
T ss_pred ---HHHh--hcCC-------------------------ChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccc
Confidence 0000 1111 123457787889999999999999999999987666544322
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
+. . ...+.+. .+++++.|||++||.+.. + +.+|++|+.+|.+|+|+++++||||||
T Consensus 105 ~~-------~--~~~~~~~-----~~l~~g~vPVv~g~~~~~---~-------~ssD~~A~~lA~~l~A~~li~~tdVdG 160 (231)
T PRK00358 105 AE-------P--YIRRRAI-----RHLEKGRVVIFAAGTGNP---F-------FTTDTAAALRAEEIGADVLLKATNVDG 160 (231)
T ss_pred cC-------c--ccHHHHH-----HHHHCCCEEEEECCCCCC---C-------CCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence 21 0 0112222 235788999999865421 1 138999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||++||+.+|+|+++++|+|+|+.++ |++++||.+++++.+++
T Consensus 161 Vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~~ 203 (231)
T PRK00358 161 VYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARDNK 203 (231)
T ss_pred eEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHHcC
Confidence 99999999999999999999998777 99999999999998764
No 38
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.94 E-value=3.4e-26 Score=216.29 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=146.9
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s-------~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
...+|+||||+++.+ .+.+++++++|+... +.+.+||||| | |.+..-
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg-G---n~~rg~-------------------- 59 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-G---NIFRGH-------------------- 59 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC-c---HHHHHH--------------------
Confidence 456999999999988 789999999998532 3466788887 3 433210
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
.++.++. +....|++.++||+||+.+++.+|+.. ++.+.++
T Consensus 60 -------~a~~~~~-------------------------~~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~i 100 (247)
T PRK14557 60 -------LAEEWGI-------------------------DRVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVRV 100 (247)
T ss_pred -------HHHhcCC-------------------------ChHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCceeE
Confidence 1112222 223559999999999999999999984 3344557
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEee-cC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DV 309 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~T-DV 309 (358)
+++..+.... ..... .++... ++++.|||++||.|.. .++ +|++|+++|..++|+.+++|| ||
T Consensus 101 ~t~~~~~~~~-~~~~~----~~~~~~-l~~g~VvV~~G~~g~~----~~s------tD~lAallA~~l~Ad~li~~ttdV 164 (247)
T PRK14557 101 MTSIPFNAVA-EPYIR----LRAVHH-LDNGYIVIFGGGNGQP----FVT------TDYPSVQRAIEMNSDAILVAKQGV 164 (247)
T ss_pred Eecccccccc-chhhH----HHHHHH-HhCCCEEEEECCcCCC----ccC------hHHHHHHHHHHhCCCEEEEecCCc
Confidence 7776554321 11111 122222 3677899999998853 333 899999999999999999995 99
Q ss_pred CccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||||+||+.+|+|++|++|+|+|+. +.+.+++||.+++++.+++
T Consensus 165 dGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~~~a~~~g 209 (247)
T PRK14557 165 DGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYN 209 (247)
T ss_pred CEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999874 5788999999999998865
No 39
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.94 E-value=4.1e-26 Score=213.32 Aligned_cols=192 Identities=23% Similarity=0.305 Sum_probs=143.1
Q ss_pred eEEEEeCccccCCH-------HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASA-------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (358)
Q Consensus 82 ~~V~KFGGSSl~s~-------e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (358)
.+|.|+|||.+.+. +.++++++.|+... .+..+|+|++.|..-. +.
T Consensus 2 riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~-----g~--------------------- 55 (231)
T PRK14558 2 RVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFR-----GV--------------------- 55 (231)
T ss_pred eEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHH-----HH---------------------
Confidence 47999999999653 66889999888643 2345555543343200 00
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEee
Q 018295 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (358)
Q Consensus 154 ~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~ 233 (358)
.+ ...++...|.+..+||+||+.+++.+|.++|++++++++ +...
T Consensus 56 -------~~------------------------~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~----~~~~ 100 (231)
T PRK14558 56 -------EL------------------------KELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ----IVNL 100 (231)
T ss_pred -------hc------------------------cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecc----cccc
Confidence 00 012344667788999999999999999999999999885 2221
Q ss_pred CCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccc
Q 018295 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (358)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVy 313 (358)
. ++...+...+.. +++.+.|||++||.+.. .. .+|++|+++|..|+|+.+++||||||||
T Consensus 101 ~-----~~~~~~~~~i~~-----ll~~g~vpV~~G~~~~~----~~------~~D~~a~~lA~~l~a~~l~~~tdVdGvy 160 (231)
T PRK14558 101 P-----SVEPINYDDIEL-----YFRAGYIVIFAGGTSNP----FF------TTDTAAALRAVEMKADILIKATKVDGIY 160 (231)
T ss_pred c-----hhhhhhHHHHHH-----HHHCCCEEEEECCCCCC----CC------CcHHHHHHHHHHcCCCEEEEEecCCeeE
Confidence 1 121222233332 34678999999986532 11 2799999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 314 taDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
++||+++|+|+++++|+|+|+.++ |++++||.+++++.+.+
T Consensus 161 ~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~g 201 (231)
T PRK14558 161 DKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYG 201 (231)
T ss_pred ccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCC
Confidence 999999999999999999999886 89999999999998754
No 40
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.94 E-value=3.5e-26 Score=213.91 Aligned_cols=194 Identities=23% Similarity=0.277 Sum_probs=146.4
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 81 ~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
+++|+|||||++. +.+.++++++.|++.. +.+.|||+|| |..... .. +
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~~~~-~~----~----------------- 57 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNIFRG-AS----A----------------- 57 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Cccccc-ch----h-----------------
Confidence 4689999999996 7899999999998543 3466778877 422100 00 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
..++.. ....|++.++|+++|+.+++..|+++|+++.++++.+...+
T Consensus 58 --------~~~~~~-------------------------~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~ 104 (231)
T cd04254 58 --------AEAGMD-------------------------RATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGV 104 (231)
T ss_pred --------hhcCCC-------------------------chhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhh
Confidence 011111 11246677789999999999999999999999999885222
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
. ...+.+.+.+ +++++.|||++||.|.. .. . +|++|+.+|.+|+|+++++||||||
T Consensus 105 ~---------~~~~~~~l~~-----~l~~g~ipV~~g~~G~~----~~---~---~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 105 A---------EPYIRRRAIR-----HLEKGRVVIFAGGTGNP----FF---T---TDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred h---------cccCHHHHHH-----HHHCCCEEEEECCcCCC----CC---C---cHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 1 1112233333 34678899999987632 11 2 7999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||++||+.+|+++++++++++|+.+ +|++++||.+++++++.+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~g 203 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDNN 203 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHCC
Confidence 9999999999999999999999876 588999999999988653
No 41
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.94 E-value=2.6e-26 Score=214.34 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=147.6
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
+.|+||||+++.+. +.++++.|.... .+.++|+||++++.+|.+++...
T Consensus 1 ~~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~---------------------------- 50 (231)
T TIGR00761 1 TIVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALG---------------------------- 50 (231)
T ss_pred CEEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcC----------------------------
Confidence 57999999999886 888998887532 23446888999999998876421
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC--
Q 018295 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-- 237 (358)
Q Consensus 161 ~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~-- 237 (358)
.+.. +.++++ ..++...+.+ .++++++|..+++ .|+++|++++++++.+.++++.+.+.
T Consensus 51 ---~~~~-----------~~~g~r---~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~ 112 (231)
T TIGR00761 51 ---IPPE-----------FKNGLR---VTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKE 112 (231)
T ss_pred ---CCCE-----------ecCCCc---cCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCc
Confidence 0000 001111 1223333332 3346688988776 79999999999999998788876443
Q ss_pred ----CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccc
Q 018295 238 ----NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (358)
Q Consensus 238 ----~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVy 313 (358)
.+++...+.+.++.. ++.+.|||++| +|.+ .+|++++++ +|++|+.||.+|+|++++|||||||||
T Consensus 113 ~~~~~g~i~~i~~~~i~~~-----l~~g~IPVi~~-~~~~-~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~ 182 (231)
T TIGR00761 113 DLGYVGEIKKVNKALLEAL-----LKAGYIPVISS-LALT-AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGIL 182 (231)
T ss_pred cCCcccceEEEcHHHHHHH-----HHCCCeEEECC-CccC-CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCee
Confidence 134544444545443 46789999999 5777 589999998 999999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 314 TCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 314 taDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
++||+ +++++|+++|+.+|++.|
T Consensus 183 ~~d~~-----~~i~~i~~~e~~~l~~~~ 205 (231)
T TIGR00761 183 NGDGQ-----SLISEIPLEEIEQLIEQG 205 (231)
T ss_pred cCCCC-----eeccccCHHHHHHHHHcC
Confidence 99884 689999999999999876
No 42
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=1.1e-25 Score=213.02 Aligned_cols=210 Identities=19% Similarity=0.302 Sum_probs=161.0
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 83 CVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 83 ~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
.|+||||+++.+.+.++++++.|... ....++|+||++|+.+|.|++...
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g---------------------------- 52 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLN---------------------------- 52 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC----------------------------
Confidence 38999999999988899999998853 234678999999999999886421
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHH-HhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC-
Q 018295 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN- 238 (358)
Q Consensus 161 ~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Il-s~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~- 238 (358)
.+++ +.++++ ..++...+.+. ..++++|..+++.++ ++|++++++++.+.++++.+.++.
T Consensus 53 ---~~~~-----------~~~g~r---vt~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~ 114 (252)
T cd04249 53 ---FPSE-----------KKNGLR---VTPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPE 114 (252)
T ss_pred ---CCCE-----------EECCEe---cCCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCC
Confidence 1110 111221 23445556654 347889999988765 899999999999988898865442
Q ss_pred ----ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 239 ----ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 239 ----a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
+++.+.+.+.+... ++.+.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||||+
T Consensus 115 ~~~~G~v~~i~~~~l~~l-----l~~g~ipVi~~-~g~~-~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~ 183 (252)
T cd04249 115 LGAVGKATANDPSLLNDL-----LKAGFLPIISS-IGAD-DQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLD 183 (252)
T ss_pred CCcccceEEEcHHHHHHH-----HHCCCEEEECC-CEEC-CCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCC
Confidence 35545555544443 47789999997 6887 489999999 999999999999999 689999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCC-----CCcccHhhHHHHHh
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFG-----AQVYIFEAVNVIEL 355 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~G-----akVLHP~ai~~a~~ 355 (358)
.|| +++++++++|+.++...| +...++.+++.++.
T Consensus 184 ~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~ 223 (252)
T cd04249 184 ADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQS 223 (252)
T ss_pred CCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHh
Confidence 876 578999999999998764 46777888887765
No 43
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.93 E-value=4.7e-25 Score=206.60 Aligned_cols=194 Identities=24% Similarity=0.315 Sum_probs=144.4
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 81 ~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
.|+|+|||||++. +.+.++++++.|.+.. +.+.|+|+|| | +.+...
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~-G---s~~~~~--------------------- 56 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG-G---NIFRGV--------------------- 56 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-C---HHHHHH---------------------
Confidence 4789999999998 5788999999998532 2344555555 3 222111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
. ++.++.+ ....|++.++++++|+.+|+..|++.|+++.++++.+.. .
T Consensus 57 ----~--a~~~~~~-------------------------~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~ 104 (233)
T TIGR02075 57 ----S--AKELGID-------------------------RVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-Q 104 (233)
T ss_pred ----H--HHhcCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-C
Confidence 0 1122211 112467888999999999999999999999999988752 1
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeec-CC
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TD-Vd 310 (358)
+...+ +.+.+.+ +++++.|||+.||.|.. .. .+|++|++||..|+|+.+++||| ||
T Consensus 105 ~~~~~--------~~~~i~~-----ll~~g~VpV~~g~~g~~----~~------s~D~~a~~lA~~l~a~~li~~td~Vd 161 (233)
T TIGR02075 105 ICESY--------IRRKAIK-----HLEKGKVVIFSGGTGNP----FF------TTDTAAALRAIEINADVILKGTNGVD 161 (233)
T ss_pred Ccccc--------CHHHHHH-----HHHCCCEEEEECCCCCC----CC------CchHHHHHHHHHcCCCEEEEeecccC
Confidence 11111 1122332 34678899999976542 11 27999999999999999999999 99
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+.+|+++++++++|+|+.++ |++++||.+++++.+++
T Consensus 162 Gvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~~~ 205 (233)
T TIGR02075 162 GVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNN 205 (233)
T ss_pred eEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998764 88999999999988753
No 44
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.93 E-value=5.8e-25 Score=204.25 Aligned_cols=183 Identities=22% Similarity=0.290 Sum_probs=142.7
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 83 ~V~KFGGSSl~s---~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
+|+|||||++.+ .+.+++++++|++..+.+++|+|+++|..++.+.+..
T Consensus 2 iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~---------------------------- 53 (221)
T cd04253 2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVA---------------------------- 53 (221)
T ss_pred EEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------------------------
Confidence 699999999998 6899999999986433456777888888777655432
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
++++. +....|.+...++++|+.++..+|. .|++++.++
T Consensus 54 ~~~~~-------------------------~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~--------------- 92 (221)
T cd04253 54 RKLGA-------------------------SEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS--------------- 92 (221)
T ss_pred HHcCC-------------------------CHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC---------------
Confidence 11221 1223567778889999999998887 787765432
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
.+.+.+. ++.+.|||++||++ +. + +|++|+.+|..|+|+.+++||||||||++||+.
T Consensus 93 ------~~~~~~~-----l~~g~vpv~~G~~~-----~~-s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~ 149 (221)
T cd04253 93 ------YEEALEA-----MFTGKIVVMGGTEP-----GQ-S------TDAVAALLAERLGADLLINATNVDGVYSKDPRK 149 (221)
T ss_pred ------HHHHHHH-----HHcCCeEEEECCCC-----CC-c------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCC
Confidence 1122222 35678999999874 22 2 699999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHC-----CC-CcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAYF-----GA-QVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~-----Ga-kVLHP~ai~~a~~~~ 357 (358)
.|+++++++|+++|+.++++. |. .++|+.+.+++.+++
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~g 193 (221)
T cd04253 150 DPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSG 193 (221)
T ss_pred CCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCC
Confidence 999999999999999999877 55 689999999887754
No 45
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.92 E-value=4.4e-25 Score=211.90 Aligned_cols=199 Identities=21% Similarity=0.315 Sum_probs=147.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
.+.|+|||||++.+.+.+..+++.|... .+.++|+|++|++.+++.+.+..
T Consensus 15 ~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g--------------------------- 67 (279)
T cd04250 15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLG--------------------------- 67 (279)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCC---------------------------
Confidence 5899999999999988888888877632 23466777777666666554431
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHH---HHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSR---DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~---d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
.+.. +.++++. .++.+. +.+++ | ++|..| ++.|++.|++++++++.+.++++++.
T Consensus 68 -----~~~~-----------~~~g~r~---t~~~~~~~~~~~~~-g-~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~ 125 (279)
T cd04250 68 -----IESE-----------FVNGLRV---TDEETMEIVEMVLV-G-KVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKK 125 (279)
T ss_pred -----CCCE-----------eECCeec---CCHHHHHHHHHHHc-C-chHHHH-HHHHHHcCCCcceeecCCCCEEEEEE
Confidence 1110 1112221 222222 33444 7 688887 77899999999999999988998876
Q ss_pred CCC------------ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceE
Q 018295 236 FTN------------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEI 303 (358)
Q Consensus 236 ~~~------------a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l 303 (358)
++. +++...+...+.. +++.+.|||++| ++.+ ..|++++++ +|.+|+.+|.+|+|+++
T Consensus 126 ~~~~~~~~~~~~~~~g~i~~i~~~~i~~-----ll~~g~IPVi~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~A~~l 195 (279)
T cd04250 126 KDATVIEEIIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-VGVG-EDGETYNIN---ADTAAGAIAAALKAEKL 195 (279)
T ss_pred CcccccCCCcccCcccceEEEcHHHHHH-----HHHCCCeEEEcC-CccC-CCCcEEEeC---HHHHHHHHHHHhCCCEE
Confidence 541 3444444444443 347789999999 6877 478888888 99999999999999999
Q ss_pred EEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 304 QVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 304 ~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
++||||||||++||+ +++++++++++|+.++++.|
T Consensus 196 i~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~ 230 (279)
T cd04250 196 ILLTDVAGVLDDPND---PGSLISEISLKEAEELIADG 230 (279)
T ss_pred EEEECCcccccCCCC---CccccccCCHHHHHHHHHcC
Confidence 999999999999984 58999999999999998653
No 46
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.92 E-value=3.5e-24 Score=198.81 Aligned_cols=184 Identities=24% Similarity=0.231 Sum_probs=139.6
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 83 ~V~KFGGSSl~s---~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
+|+|||||++.+ .+.++++++.|++..+.+.+|+|+++|..++.+++..
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~---------------------------- 52 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVA---------------------------- 52 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHH----------------------------
Confidence 489999999988 6899999999986433245666666666555443321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
+.++. +....|++...++++|+.++...|+..|++++..++.+
T Consensus 53 ~~~~~-------------------------~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~~~------------ 95 (221)
T TIGR02076 53 RELGA-------------------------SETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENFEE------------ 95 (221)
T ss_pred HHcCC-------------------------CHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCHHH------------
Confidence 12221 22355778888999999999999988888766433211
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
..+. +..+.+||++||++ |.. +|++|+.+|.+|+|+.+++||||||||++||+.
T Consensus 96 ---------~~~~-----l~~g~ipv~~G~~~-----~~s-------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~ 149 (221)
T TIGR02076 96 ---------ALEA-----MSLGKIVVMGGTHP-----GHT-------TDAVAALLAEFSKADLLINATNVDGVYDKDPKK 149 (221)
T ss_pred ---------HHHH-----HHcCCEEEEcCCCC-----CCC-------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCC
Confidence 1122 35678999999862 221 699999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHH---CCC---CcccHhhHHHHHhcc
Q 018295 320 HPHAKPVPYLTFDEAAELAY---FGA---QVYIFEAVNVIELCK 357 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~---~Ga---kVLHP~ai~~a~~~~ 357 (358)
+|++++|++++++|+.+++. +|. .+.|+.+.+++.+++
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~ 193 (221)
T TIGR02076 150 DPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSK 193 (221)
T ss_pred CCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCC
Confidence 99999999999999999987 333 378999999987754
No 47
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.92 E-value=1.8e-24 Score=207.88 Aligned_cols=198 Identities=23% Similarity=0.340 Sum_probs=147.9
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
+.++|+||||+++.+.+.+..+++.|.... .+..+||||++++.++.+++..
T Consensus 23 ~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~--------------------------- 75 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKL--------------------------- 75 (283)
T ss_pred CCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHC---------------------------
Confidence 357999999999999988888888887432 2334689999999999887631
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHH---HHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSR---DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~---d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
+.... +.++++. .++... +.+++ | ++|..++ +.|+++|++++++++.+.++++++.
T Consensus 76 ----g~~~~-----------~~~g~~~---t~~~~l~~~~~a~~-G-~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~ 134 (283)
T PRK00942 76 ----GIESE-----------FVNGLRV---TDAETMEVVEMVLA-G-KVNKELV-SLINKHGGKAVGLSGKDGGLITAKK 134 (283)
T ss_pred ----CCCcE-----------eeCCEec---CCHHHHHHHHHHHc-C-chHHHHH-HHHHhCCCCccceeeccCCEEEEEE
Confidence 11100 0111111 222222 33444 6 7787776 7899999999999999998998865
Q ss_pred C------C-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeec
Q 018295 236 F------T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (358)
Q Consensus 236 ~------~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TD 308 (358)
+ + .+++...+.+.+... ++.+.|||+++ ++.+ .+|++++++ +|++|+.||.+|+|++++||||
T Consensus 135 ~~~~~~~~~~g~i~~i~~~~l~~l-----l~~g~vpVv~~-~~~~-~~g~~~~l~---~D~~A~~lA~~l~A~~li~~td 204 (283)
T PRK00942 135 LEEDEDLGFVGEVTPVNPALLEAL-----LEAGYIPVISP-IGVG-EDGETYNIN---ADTAAGAIAAALGAEKLILLTD 204 (283)
T ss_pred CCCCCCCccccceEEECHHHHHHH-----HHCCCEEEEcC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEEC
Confidence 5 2 134444444444443 47789999997 7888 489999998 9999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 309 VdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
|||||++ +++++++|+++|+.+++..|
T Consensus 205 v~Gv~~~------~~~~i~~i~~~e~~~~~~~~ 231 (283)
T PRK00942 205 VPGVLDD------KGQLISELTASEAEELIEDG 231 (283)
T ss_pred CcccccC------CCcccccCCHHHHHHHHHcC
Confidence 9999986 47899999999999998763
No 48
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.91 E-value=5.7e-24 Score=201.53 Aligned_cols=194 Identities=21% Similarity=0.283 Sum_probs=144.7
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 018295 83 CVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (358)
Q Consensus 83 ~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (358)
.|+||||+++.+.+.++++++.|.... ...++|||+++++.+|.+++....
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~---------------------------- 52 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGI---------------------------- 52 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCC----------------------------
Confidence 489999999999988999998887421 234467779999999998864321
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHH---HHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCC--
Q 018295 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY---LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (358)
Q Consensus 162 L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~---Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~-- 236 (358)
... +.+++ +..++...+. .++ | ++|..| .+.|+++|++++++++.+.++++++.+
T Consensus 53 ---~~~-----------~~~~~---r~t~~~~l~~~~~a~~-g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 112 (256)
T cd04238 53 ---ESE-----------FVNGL---RVTDKETMEIVEMVLA-G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEE 112 (256)
T ss_pred ---CCE-----------eECCe---ecCCHHHHHHHHHHHc-C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCC
Confidence 000 00011 1122232222 333 6 788887 778999999999999999888888642
Q ss_pred -----C-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 237 -----T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 237 -----~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+ .+++...+.+.+... ++++.|||++| ++.+ ..|++++++ +|++|+.||.+|+|++++||||||
T Consensus 113 ~~~~~~~~g~i~~i~~~~l~~l-----l~~g~ipVv~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~ 182 (256)
T cd04238 113 KDIDLGFVGEVTEVNPELLETL-----LEAGYIPVIAP-IAVD-EDGETYNVN---ADTAAGAIAAALKAEKLILLTDVP 182 (256)
T ss_pred CCCCcccccceEEECHHHHHHH-----HHCCCEEEECC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 1 134544555545443 47789999998 6877 478999998 999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHC
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~ 340 (358)
|||++ +++++++++++|+.+++..
T Consensus 183 Gv~~~------~~~~i~~i~~~e~~~~~~~ 206 (256)
T cd04238 183 GVLDD------PGSLISELTPKEAEELIED 206 (256)
T ss_pred cccCC------CCCccccCCHHHHHHHHHc
Confidence 99987 3789999999999999863
No 49
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.90 E-value=1.3e-22 Score=201.72 Aligned_cols=203 Identities=19% Similarity=0.275 Sum_probs=147.9
Q ss_pred CCceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCC--CcCchHHHHHhHHHHhcCCCccchHHHH
Q 018295 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAM--GKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s------~e~i~~Va~iI~~~~--~~~~vVVVSA~--gg~Td~Ll~~~~~a~~~~~~~~~~~~~l 148 (358)
.+.++|+||||++|.+ .+.+..+++.|.... +.+.|+|+|+. .|. +.
T Consensus 4 ~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~-~~---------------------- 60 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY-HK---------------------- 60 (368)
T ss_pred CCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc-cc----------------------
Confidence 4568999999999985 488999999987542 34555666653 122 11
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccce
Q 018295 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (358)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~ 228 (358)
|+... ......++.+.+.|+.+...++...|+++|+++..+
T Consensus 61 -------------l~~~~---------------------~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aqv----- 101 (368)
T PRK13402 61 -------------LGFID---------------------RPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQL----- 101 (368)
T ss_pred -------------cCCCC---------------------CCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEE-----
Confidence 11000 001224577888999999999999999999998543
Q ss_pred EEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEe--eCCCcchHHHHHHHHHcCCceEEEe
Q 018295 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVW 306 (358)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~LA~aL~A~~l~i~ 306 (358)
++|.+++.+.+ .+.+++..+. .+++.+.|||+.. +..+++ +++|++|++|+++|.+|+|+.++||
T Consensus 102 -LlT~~d~~~~~----~y~n~~~~l~-~LL~~g~IPIine-------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Liil 168 (368)
T PRK13402 102 -LLTHGDLRDRE----RYINIRNTIN-VLLERGILPIINE-------NDAVTTDRLKVGDNDNLSAMVAALADADTLIIL 168 (368)
T ss_pred -EEecchhhhHH----HHHHHHHHHH-HHHHCCcEEEEeC-------CCcEeecccccCChHHHHHHHHHHhCCCEEEEE
Confidence 56666553221 1334454443 3467889999963 123344 7899999999999999999999999
Q ss_pred ecCCccccCCCCCCCCCcccCCcCH--HHHHHHH-----HCCCCcccH--hhHHHHHhc
Q 018295 307 KDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELA-----YFGAQVYIF--EAVNVIELC 356 (358)
Q Consensus 307 TDVdGVytaDP~~v~~Ak~i~~Lsy--~EA~eLa-----~~GakVLHP--~ai~~a~~~ 356 (358)
|||||||++||+.+|++++|++|++ +|+.+++ .+|...+|| ++...+.++
T Consensus 169 TDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~ 227 (368)
T PRK13402 169 SDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSH 227 (368)
T ss_pred ecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHc
Confidence 9999999999999999999999997 7887876 467888999 556666544
No 50
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.89 E-value=2.1e-22 Score=192.44 Aligned_cols=206 Identities=19% Similarity=0.256 Sum_probs=144.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~-~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
|+|+||||+++.+.+.+ ++.|... ..+.++|+|++.|...+.+++.
T Consensus 1 ~~ViK~GG~~l~~~~~~---~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~------------------------------ 47 (268)
T PRK14058 1 MIVVKIGGSVGIDPEDA---LIDVASLWADGERVVLVHGGSDEVNELLER------------------------------ 47 (268)
T ss_pred CEEEEEChHHhhCcHHH---HHHHHHHHHCCCCEEEEeCCHHHHHHHHHH------------------------------
Confidence 78999999999886433 2223221 1234455666667776665542
Q ss_pred HhCCCHHHHHHHHHHHHHHHH---HhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC--
Q 018295 161 ELGIDRSIIATHLEELEQLLK---GIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (358)
Q Consensus 161 ~L~~~~~~i~~~~~~L~~ll~---gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (358)
+++++. +.+ |+. .+-.+++..+.+ .++| ++|..+++ .|+++|++|+++++.+.++++..
T Consensus 48 -~gi~~~-----------~~~~~~g~~-~rvt~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~ 112 (268)
T PRK14058 48 -LGIEPR-----------FVTSPSGVT-SRYTDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRK 112 (268)
T ss_pred -cCCCce-----------EEeCCCCCc-eEeCCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEe
Confidence 222221 111 100 123456666664 6889 99999886 89999999999999998776532
Q ss_pred --------------CCC-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcC
Q 018295 235 --------------DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALG 299 (358)
Q Consensus 235 --------------~~~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~ 299 (358)
+++ .+++...+.+.+... ++++.|||++|+ +.+ .+|+.++++ +|++|+.+|.+|+
T Consensus 113 ~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~l-----l~~g~iPVi~~~-~~~-~~g~~~~i~---~D~~A~~lA~~l~ 182 (268)
T PRK14058 113 KAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLL-----LKAGYLPVVAPP-ALS-EEGEPLNVD---GDRAAAAIAGALK 182 (268)
T ss_pred cccccccCCcceeccCCceeEEEEECHHHHHHH-----HHCCCEEEEeCc-eEC-CCCcEEecC---HHHHHHHHHHHcC
Confidence 111 135555555555443 477899999996 555 478888887 9999999999999
Q ss_pred CceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHh
Q 018295 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFE 348 (358)
Q Consensus 300 A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ 348 (358)
|++++|||||||||++||+ +++++++|+++|+.++..+..--+.|+
T Consensus 183 A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~K 228 (268)
T PRK14058 183 AEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKK 228 (268)
T ss_pred CCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHH
Confidence 9999999999999999984 578999999999999876544445554
No 51
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.89 E-value=2.8e-22 Score=199.87 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=144.1
Q ss_pred CCceEEEEeCccccCC------HHHHHHHHHHHHcCC-CC-CcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP-NE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s------~e~i~~Va~iI~~~~-~~-~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
++.++|+|||||++.+ .+.+.++++.|.... .+ +.|+|+|+. + .....
T Consensus 7 ~~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i-----~~g~~----------------- 62 (372)
T PRK05429 7 DARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--V-----AAGRE----------------- 62 (372)
T ss_pred hCCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--h-----hhhHh-----------------
Confidence 3567999999999986 788999999998643 23 444455432 1 11000
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
.++.... .......+.+.+.||.....++..+|+++|+++..+ +
T Consensus 63 ----------~l~l~~~--------------------~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi------l 106 (372)
T PRK05429 63 ----------RLGLPER--------------------PKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQI------L 106 (372)
T ss_pred ----------hcCCCCC--------------------CCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE------E
Confidence 1221110 011234467889999999999999999999997653 4
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcE--EeeCCCcchHHHHHHHHHcCCceEEEeec
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~--ttlgRgGSD~tAa~LA~aL~A~~l~i~TD 308 (358)
+|.+++.+.. .+-+... ....+++.+.|||++. ++.+ ..+++|++|++|+.||.+|+|+.++||||
T Consensus 107 ~t~~d~~~~~----~~ln~~~-~i~~Ll~~g~IPVi~~-------nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTD 174 (372)
T PRK05429 107 LTRDDLEDRE----RYLNARN-TLRTLLELGVVPIINE-------NDTVATDEIKFGDNDTLSALVANLVEADLLILLTD 174 (372)
T ss_pred eehhHhhhhh----HhhhHHH-HHHHHHHCCCEEEEcC-------CCccceecccccChHHHHHHHHHHcCCCEEEEecC
Confidence 5555442211 1111122 2334457889999964 1121 23678899999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccCCcCH--HHHHHHHH-----CCCCcccH--hhHHHHHhc
Q 018295 309 VDGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVYIF--EAVNVIELC 356 (358)
Q Consensus 309 VdGVytaDP~~v~~Ak~i~~Lsy--~EA~eLa~-----~GakVLHP--~ai~~a~~~ 356 (358)
|||||++||+.+|++++|+++++ +|+.+++. +|...++| ++...+.++
T Consensus 175 VdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~ 231 (372)
T PRK05429 175 VDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRA 231 (372)
T ss_pred CCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHC
Confidence 99999999999999999999998 67888863 67888999 555555543
No 52
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.87 E-value=7e-22 Score=211.43 Aligned_cols=192 Identities=18% Similarity=0.238 Sum_probs=140.9
Q ss_pred CCceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 79 KQLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s~e------~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
.+.++|+|||||||.+.+ +|++++++|... .+.+.|+|+||+.+.|+.++...+..
T Consensus 14 ~~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~---------------- 77 (718)
T PLN02418 14 DVKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLV---------------- 77 (718)
T ss_pred hCCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhh----------------
Confidence 356899999999999988 999999999853 34567899999999999888753211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHH--HHHHhHHHHHHHHHHHHHHHcCCceeEeeccce
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRD--YLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d--~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~ 228 (358)
+++..+ + . .+....| .+.|+||.++..+++.+|++.|++ +.++
T Consensus 78 ---------~~~~~~----------~---~--------~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~-----~~qi 122 (718)
T PLN02418 78 ---------NSSFAD----------L---Q--------KPQMELDGKACAAVGQSELMALYDTLFSQLDVT-----ASQL 122 (718)
T ss_pred ---------hccccc----------C---C--------CCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCe-----EEEE
Confidence 111000 0 0 0111224 679999999999999999999995 4455
Q ss_pred EEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC---------CcchHHHHHHHHHcC
Q 018295 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---------GGSDLTATTIGKALG 299 (358)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR---------gGSD~tAa~LA~aL~ 299 (358)
++|+++|.+.+. +.+..+.+. .+++.+.|||+.| ++.+++..+ +++|++|++||.+++
T Consensus 123 -llT~~~~~~~~~----~~~~~~~l~-~ll~~g~iPVv~~-------nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~ 189 (718)
T PLN02418 123 -LVTDSDFRDPDF----RKQLSETVE-SLLDLRVIPIFNE-------NDAVSTRRAPYEDSSGIFWDNDSLAALLALELK 189 (718)
T ss_pred -EecHhHhcchhH----hHhHHHHHH-HHHHCCCEEEEcC-------CCCccccccccccccCeecCcHHHHHHHHHHcC
Confidence 788777765443 222333333 3457889999976 233333311 159999999999999
Q ss_pred CceEEEeecCCccccCCCCCCCCCcccCCcCHHHHH
Q 018295 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA 335 (358)
Q Consensus 300 A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~ 335 (358)
|+.++|||||||||++||+ .|++++|++++..+..
T Consensus 190 Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~ 224 (718)
T PLN02418 190 ADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQ 224 (718)
T ss_pred CCEEEEeecCCeeecCCCC-CCCceEcceecccchh
Confidence 9999999999999999998 5899999999865543
No 53
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.86 E-value=1e-20 Score=178.76 Aligned_cols=189 Identities=20% Similarity=0.280 Sum_probs=132.0
Q ss_pred eEEEEeCccccCCH--------HHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASA--------ERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (358)
Q Consensus 82 ~~V~KFGGSSl~s~--------e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (358)
|+|.|+||+.+.+. +.++++++.++... +.++|+||+.+..-+.+++
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~-g~~vvlVhGgg~~~~~~~~------------------------ 55 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI-DEKLVLVHGGGSFGHPKAK------------------------ 55 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc-CCCEEEEECCCcccCHHHH------------------------
Confidence 58999999999764 57888899887643 4456666765554443322
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEe
Q 018295 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (358)
Q Consensus 154 ~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit 232 (358)
.+++++ +++. ..+.....+ ...+ +++.. +.++|.++|+++.++++.++ +.+
T Consensus 56 -------~~g~~~---------------g~~~---~~~~~l~~~~~~~~-~ln~~-~~~~l~~~g~~a~~l~~~~~-~~~ 107 (252)
T cd04241 56 -------EYGLPD---------------GDGS---FSAEGVAETHEAML-ELNSI-VVDALLEAGVPAVSVPPSSF-FVT 107 (252)
T ss_pred -------HhCCCc---------------CCCc---hhhhhHHHHHHHHH-HHHHH-HHHHHHHCCCCeEEEChHHe-EEe
Confidence 111110 0000 000101111 1223 56665 56678999999999999996 443
Q ss_pred eCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
. .+++...+.+.+... ++.+.|||++|+++.+ .+|++.+++ +|++|+.+|.+|+|+++++|||||||
T Consensus 108 ~----~g~~~~~~~~~l~~l-----l~~g~iPVi~~~~~~~-~~~~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv 174 (252)
T cd04241 108 E----NGRIVSFDLEVIKEL-----LDRGFVPVLHGDVVLD-EGGGITILS---GDDIVVELAKALKPERVIFLTDVDGV 174 (252)
T ss_pred c----CCeeeeecHHHHHHH-----HhCCCEEEEcCCeEec-CCCCeEEeC---hHHHHHHHHHHcCCCEEEEEeCCCee
Confidence 2 224444444444433 4788999999988877 467788888 99999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 313 LTCDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
|++|| |+++++++|+++|+.++..
T Consensus 175 ~~~~P---~~~~~i~~i~~~~~~~~~~ 198 (252)
T cd04241 175 YDKPP---PDAKLIPEIDVGSLEDILA 198 (252)
T ss_pred ECCCC---CCCeEcceeCccchHHHHH
Confidence 99999 8999999999988888865
No 54
>PLN02512 acetylglutamate kinase
Probab=99.86 E-value=9.7e-21 Score=184.57 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=140.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
.++|+||||+++.+.+....+.+.|.... .+.++|+|++.|...+.+++.
T Consensus 48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~----------------------------- 98 (309)
T PLN02512 48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKK----------------------------- 98 (309)
T ss_pred CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH-----------------------------
Confidence 67999999999998765555555554221 223455666666655554431
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
++++++ +.+|++ ..++.+.+.+ ..+.-.+|..++ +.|+++|++++++++.+.++++.+.+.+
T Consensus 99 --~gi~~~-----------~~~G~r---vT~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~~~ 161 (309)
T PLN02512 99 --VGIEPQ-----------FKNGLR---VTDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPSPN 161 (309)
T ss_pred --cCCCCc-----------CCCCCc---CCCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEcCc
Confidence 222221 122322 2334444444 233335677765 5799999999999999988888875532
Q ss_pred -------ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 239 -------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 239 -------a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
+++...+.+.+.. +++.+.|||++| ++.+ ..|+..+++ +|++|+.||.+|+|++++|||||||
T Consensus 162 ~~~~~~~G~i~~v~~~~i~~-----lL~~g~IPVi~~-~~~d-~~g~~~~i~---~D~~A~~lA~~L~Ad~li~lTdV~G 231 (309)
T PLN02512 162 SADLGFVGEVTRVDPTVLRP-----LVDDGHIPVIAT-VAAD-EDGQAYNIN---ADTAAGEIAAALGAEKLILLTDVAG 231 (309)
T ss_pred CccccccceeeecCHHHHHH-----HHhCCCEEEEeC-ceEC-CCCCEeccC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 3444444444444 347889999999 4777 578888887 9999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHC
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~ 340 (358)
||++|| +++++|++|+++|+.++...
T Consensus 232 V~~~~~---~~~~lI~~i~~~e~~~l~~~ 257 (309)
T PLN02512 232 VLEDKD---DPGSLVKELDIKGVRKLIAD 257 (309)
T ss_pred eeCCCC---CCcCCCcccCHHHHHHHHhC
Confidence 999864 35889999999999998754
No 55
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.86 E-value=4.7e-21 Score=190.54 Aligned_cols=147 Identities=20% Similarity=0.322 Sum_probs=111.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEc-CCcc
Q 018295 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVT-GFLG 271 (358)
Q Consensus 193 ~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~-Gfig 271 (358)
.++.+.+.|+.++..++...|.++|+++..+ ++|.+++.+.+ .+.+....+ ..+++.+.|||++ +..-
T Consensus 67 ~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aqi------llt~~d~~~~~----~~lna~~~i-~~Ll~~g~iPVi~end~v 135 (363)
T TIGR01027 67 EKQALAAVGQVRLMQLYEQLFSQYGIKVAQI------LLTRADFSDRE----RYLNARNTL-EALLELGVVPIINENDTV 135 (363)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHcCCeEEEE------EEeccchhhHH----HHHHHHHHH-HHHHhCCCEEEEeCCCce
Confidence 3467889999999999999999999996443 66766654321 122222323 3345778999996 2110
Q ss_pred ccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHH--HHHHHH-----HCCCCc
Q 018295 272 KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD--EAAELA-----YFGAQV 344 (358)
Q Consensus 272 ~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~--EA~eLa-----~~GakV 344 (358)
..+.+++|++|++|+++|.+|+|+.++|||||||||++||+.+|+|++|+++++. +..+++ .+|...
T Consensus 136 ------~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGG 209 (363)
T TIGR01027 136 ------ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGG 209 (363)
T ss_pred ------eeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCC
Confidence 1234778899999999999999999999999999999999999999999999964 455665 478888
Q ss_pred ccHh--hHHHHHhc
Q 018295 345 YIFE--AVNVIELC 356 (358)
Q Consensus 345 LHP~--ai~~a~~~ 356 (358)
+||+ +...+.++
T Consensus 210 M~~Kl~Aa~~a~~~ 223 (363)
T TIGR01027 210 MRTKLQAADLATRA 223 (363)
T ss_pred chHHHHHHHHHHHC
Confidence 9998 66666554
No 56
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.85 E-value=2.6e-20 Score=175.78 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=146.1
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s-------~e~i~~Va~iI~~~~~-~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
...+|+|++|..+.. ++.++++++.|+...+ +..|.+|-+.|.+-.--
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~------------------------ 70 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGG------------------------ 70 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCc------------------------
Confidence 356899999999874 3779999999987532 34454444556553310
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
...++. -.+....|++.-++.++|+.++...|.+.|++++.+++-..
T Consensus 71 -------~~~~~~-----------------------~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~--- 117 (249)
T PRK14556 71 -------RANFGN-----------------------KIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGV--- 117 (249)
T ss_pred -------hhhccC-----------------------CCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc---
Confidence 001100 02345779999999999999999999999999988876432
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
..+ +++. +++++.+. ++.+.|+|+.|+.|.. ..+ +|++|+++|..++|+.+++||||||
T Consensus 118 --~~~--~e~~--~~~~~~~~-----l~~g~vvi~~gg~G~p----~~S------tD~lAallA~~l~Ad~Lii~TdVDG 176 (249)
T PRK14556 118 --DGL--LKVA--SAHEFNQE-----LAKGRVLIFAGGTGNP----FVT------TDTTASLRAVEIGADALLKATTVNG 176 (249)
T ss_pred --CcC--CCCC--CHHHHHHH-----HhCCCEEEEECCCCCC----cCC------cHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 111 1221 33333333 3677899989987742 233 7999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||+||+++|+|+++++|+|+|+.+ .+.+++|+.+++++.+.+
T Consensus 177 VYd~DP~~~p~A~~i~~I~~~e~~~---~~l~vmd~~A~~~a~~~g 219 (249)
T PRK14556 177 VYDKDPNKYSDAKRFDKVTFSEVVS---KELNVMDLGAFTQCRDFG 219 (249)
T ss_pred cCCCCCCCCCCceEeeEEchhhhcc---cchHhHHHHHHHHHHHCC
Confidence 9999999999999999999999876 467899999999998765
No 57
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.84 E-value=5.5e-20 Score=177.30 Aligned_cols=202 Identities=18% Similarity=0.252 Sum_probs=143.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
.+.|.|+||+.+.+......+++.|.... .+.++|+|++.|..-+.+++
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~------------------------------ 73 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLK------------------------------ 73 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH------------------------------
Confidence 68999999999988654556666665432 23456777777766555443
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC-
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT- 237 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~- 237 (358)
++++++. +.+|++ ..++.+.+.+ ..+...+|..+++ .|++.|++++++++.+.++++.....
T Consensus 74 -~~g~~~~-----------~~~G~r---vT~~~~l~~~~~~l~g~ln~~lv~-~L~~~Gv~av~l~~~d~~~i~a~~~~~ 137 (284)
T CHL00202 74 -QLNISPK-----------FWNGIR---VTDKVTMEIVEMVLAGKVNKDLVG-SINANGGKAVGLCGKDANLIVARASDK 137 (284)
T ss_pred -HCCCCCE-----------eECCcc---cCCHHHHHHHHHHHhhHHHHHHHH-HHHhCCCCeeeeeeccCCEEEEEeCCC
Confidence 2233321 234443 3345555555 3344456777655 68999999999999998888765332
Q ss_pred ----C-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 238 ----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 238 ----~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
. +++...+.+.+.. +++.+.|||++| ++.+ ..|++++++ +|++|+.||.+|+|++++||||||||
T Consensus 138 ~d~~~~G~i~~v~~~~i~~-----ll~~g~iPVi~~-~~~~-~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv 207 (284)
T CHL00202 138 KDLGLVGEIQQVDPQLIDM-----LLEKNYIPVIAS-VAAD-HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGI 207 (284)
T ss_pred cccccceeEEecCHHHHHH-----HHHCCCEEEECC-CccC-CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhh
Confidence 2 3454555554444 347789999999 5777 479999998 99999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
|+.+. .| .+++++++++|+.+++..|
T Consensus 208 ~~~~~--d~-~~~i~~i~~~e~~~l~~~g 233 (284)
T CHL00202 208 LADIN--DP-NSLISTLNIKEARNLASTG 233 (284)
T ss_pred cCCCC--CC-CCccccccHHHHHHHHhcC
Confidence 98421 12 3799999999999998764
No 58
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.84 E-value=2.2e-19 Score=171.24 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=133.9
Q ss_pred ceEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s--~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
.+.|.|+|||.+.+ .+.++++++.|++..+...+++|++.|....... ..
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~~~----------------------------~~ 82 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARHVY----------------------------SI 82 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH----------------------------HH
Confidence 56999999999954 5789999999987544445666665443211111 11
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
...++.+ ....|++...-.++|+.++...|..+|+++.. ..
T Consensus 83 ~~~~g~~-------------------------~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~----------~~---- 123 (262)
T cd04255 83 GLDLGMP-------------------------TGVLAKLGASVSEQNAEMLATLLAKHGGSKVG----------HG---- 123 (262)
T ss_pred HHHcCCC-------------------------chHHHHHHHHHHHHHHHHHHHHHHHcCCCccc----------cc----
Confidence 1123322 23345555555677888887778888887521 00
Q ss_pred ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCc------chHHHHHHHHHcCCceEEEeecCCcc
Q 018295 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG------SDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgG------SD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
+...+.+ +++.+.|||++|+.+.+ ..++++|+| +|++|+++|.+|+|+.+++|||||||
T Consensus 124 ------~~~~l~~-----lL~~g~vPVi~g~~~~~----~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGV 188 (262)
T cd04255 124 ------DLLQLPT-----FLKAGRAPVISGMPPYG----LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGL 188 (262)
T ss_pred ------cHHHHHH-----HHHCCCeEEEeCCcCCC----eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCee
Confidence 1122333 34788999999987643 345666666 89999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhc
Q 018295 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELC 356 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~ 356 (358)
|++||+.+|+++++++|+++|+.++.. +..++...+...++.+
T Consensus 189 y~~dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa 231 (262)
T cd04255 189 YTADPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNA 231 (262)
T ss_pred ECCCCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHh
Confidence 999999999999999999999888752 2224566666555543
No 59
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.83 E-value=6e-20 Score=174.18 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=155.4
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
+.+.|.|+||+.+.+.+-+..+++-|... ...++ |||++.|...|.+++
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~-VvVHGggp~I~~~l~---------------------------- 52 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRP-VVVHGGGPQIDEMLA---------------------------- 52 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcE-EEEeCCchHHHHHHH----------------------------
Confidence 46899999999999988888888876543 24566 677777777666554
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (358)
.+++++ ++.+|++ ..++.+.+-+ +.++..+|..|++ .|+++|.+++++++.|.++++....
T Consensus 53 ---~~gie~-----------~f~~glR---vTd~~tlevv~mvl~G~vNk~iva-~l~~~g~~avGlsg~Dg~li~A~~~ 114 (265)
T COG0548 53 ---KLGIEP-----------EFVKGLR---VTDAETLEVVEMVLGGTVNKEIVA-RLSKHGGQAVGLSGVDGNLVTAKKL 114 (265)
T ss_pred ---HcCCCC-----------eeeCCEE---cCCHHHHHHHHHHHHHHHHHHHHH-HHHHhCCcceeeeecCCCEEEEEEc
Confidence 244444 2445544 3455666665 6677778999766 5899999999999999889987533
Q ss_pred CC---------ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEee
Q 018295 237 TN---------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 237 ~~---------a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~T 307 (358)
.. +++..++++.+ ..+++++.|||+++ +|.+ .+|++.|++ +|++|+.+|.+|+|++++++|
T Consensus 115 ~~~~~id~g~vG~i~~Vn~~~i-----~~ll~~~~IpViap-ia~~-~~G~~~Nvn---aD~~A~~iA~aLkAekLi~lt 184 (265)
T COG0548 115 DVDDGVDLGYVGEIRKVNPELI-----ERLLDNGAIPVIAP-IAVD-EDGETLNVN---ADTAAGALAAALKAEKLILLT 184 (265)
T ss_pred ccccccccceeeeEEEECHHHH-----HHHHhCCCceEEec-ceEC-CCCcEEeeC---HHHHHHHHHHHcCCCeEEEEe
Confidence 22 34444554433 34457889999998 8888 599999999 999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 308 DVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
||+|||+.+|+ .+.++.++.+|+.+|...|
T Consensus 185 dv~Gvl~~~~~----~s~i~~~~~~~~~~li~~~ 214 (265)
T COG0548 185 DVPGVLDDKGD----PSLISELDAEEAEELIEQG 214 (265)
T ss_pred CCcccccCCCC----ceeeccCCHHHHHHHHhcC
Confidence 99999998764 2789999999999999976
No 60
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.83 E-value=3e-19 Score=165.61 Aligned_cols=196 Identities=21% Similarity=0.283 Sum_probs=150.0
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s-------~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
.+.+|+|+||+.+.. ++.++++++.|++.. .+..|.||-+.|++-......
T Consensus 5 ~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~--------------------- 63 (238)
T COG0528 5 YMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGA--------------------- 63 (238)
T ss_pred eEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHH---------------------
Confidence 366899999998875 588999999998753 345676666777664433221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
. .|. +....|++.-++.++|+.+|...|.+.|++++.+++-....+
T Consensus 64 -------~--~g~-------------------------~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~ 109 (238)
T COG0528 64 -------A--AGM-------------------------DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQV 109 (238)
T ss_pred -------H--cCC-------------------------chhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccc
Confidence 0 022 235678999999999999999999999999998876553110
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeec-CC
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TD-Vd 310 (358)
.+ ..++++..+. ++.+.|+|..|-.+.. +.+ +|++|++.|..++||-++..|+ ||
T Consensus 110 -------~e--~~~~~~A~~~-----l~~grVvIf~gGtg~P---~fT-------TDt~AALrA~ei~ad~ll~atn~VD 165 (238)
T COG0528 110 -------AE--PYSRREAIRH-----LEKGRVVIFGGGTGNP---GFT-------TDTAAALRAEEIEADVLLKATNKVD 165 (238)
T ss_pred -------cC--ccCHHHHHHH-----HHcCCEEEEeCCCCCC---CCc-------hHHHHHHHHHHhCCcEEEEeccCCC
Confidence 01 1122222222 3678999998855542 454 6999999999999999999995 99
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|+|+.+++|||+|+.+. +.+|++|-|+.+++++|
T Consensus 166 GVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~ 209 (238)
T COG0528 166 GVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNG 209 (238)
T ss_pred ceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcC
Confidence 999999999999999999999998886 57999999999999986
No 61
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.82 E-value=2.1e-19 Score=170.89 Aligned_cols=195 Identities=20% Similarity=0.292 Sum_probs=138.3
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHHh
Q 018295 83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (358)
Q Consensus 83 ~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~L 162 (358)
.|.||||+.+.+ ++++++.|... +.++|+|++.|...+.+++. +
T Consensus 1 ~VIKlGGs~l~~---~~~~~~~i~~l--g~~~VlVHGgg~~i~~~~~~-------------------------------~ 44 (257)
T cd04251 1 IVVKIGGSVVSD---LDKVIDDIANF--GERLIVVHGGGNYVNEYLKR-------------------------------L 44 (257)
T ss_pred CEEEEChHHhhC---hHHHHHHHHHc--CCCEEEECCCHHHHHHHHHH-------------------------------c
Confidence 489999999986 45677777765 34578898888877765542 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCC------
Q 018295 163 GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF------ 236 (358)
Q Consensus 163 ~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~------ 236 (358)
++++.++. ..+|+. .+-.++++.+.+..-.+.+|..+++ .|+++|++++++++.+.++++.+..
T Consensus 45 gi~~~~~~--------~~~G~~-~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~ 114 (257)
T cd04251 45 GVEPKFVT--------SPSGIR-SRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIVRVN 114 (257)
T ss_pred CCCcEEEe--------CCCCCc-cccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeeccccc
Confidence 22221000 000100 0123456666665444889999766 8999999999999999777665422
Q ss_pred --C---------CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEE
Q 018295 237 --T---------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (358)
Q Consensus 237 --~---------~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i 305 (358)
+ .+++...+.+.++.. ++++.|||+++| +.+ .+|++++++ +|++|+.||.+|+|++++|
T Consensus 115 ~~~~~~~~d~~~~G~v~~v~~~~i~~l-----l~~g~vpVi~~~-~~~-~~G~~~~i~---~D~~A~~lA~~L~A~~li~ 184 (257)
T cd04251 115 ERGRKMIIRGGYTGKVEKVNSDLIEAL-----LDAGYLPVVSPV-AYS-EEGEPLNVD---GDRAAAAIAAALKAERLIL 184 (257)
T ss_pred ccCcccccCCcceEEEEEEcHHHHHHH-----HhCCCeEEEeCc-EEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEE
Confidence 0 024444444544443 478899999885 545 479999998 9999999999999999999
Q ss_pred eecCCccccCCCCCCCCCcccCCcCHHHHHHHHHC
Q 018295 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (358)
Q Consensus 306 ~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~ 340 (358)
||||||||++ ++++++|+++|+.++...
T Consensus 185 ~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~ 212 (257)
T cd04251 185 LTDVEGLYLD-------GRVIERITVSDAESLLEK 212 (257)
T ss_pred EeCChhheeC-------CcccCccCHHHHHHHHhh
Confidence 9999999963 778999999999998753
No 62
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.70 E-value=6.1e-16 Score=146.43 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=132.1
Q ss_pred EEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHHh
Q 018295 84 VMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (358)
Q Consensus 84 V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~L 162 (358)
|.|+||+.+.+. +.++++.|.... .+.++|+|++.|..-+.+++ ++
T Consensus 2 ViKiGG~~~~~~--l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~-------------------------------~~ 48 (248)
T cd04252 2 VIKVGGAIIEDD--LDELAASLSFLQHVGLYPIVVHGAGPQLNEELE-------------------------------AA 48 (248)
T ss_pred EEEEChhhhhcc--HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHH-------------------------------Hc
Confidence 899999999874 677777666432 23335777777766555543 23
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEee----CCCC
Q 018295 163 GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT----DDFT 237 (358)
Q Consensus 163 ~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~----~~~~ 237 (358)
++++. +.+|++ ..++...+.+ .+++ .+|..+++. |+++|++++++.+.- +... .+++
T Consensus 49 gi~~~-----------~~~g~R---vT~~~~l~~v~~al~-~vn~~iv~~-l~~~g~~a~~l~~~~--~~a~~~~~~d~g 110 (248)
T cd04252 49 GVEPE-----------YVDGLR---VTDPETLAVARKVFL-EENLKLVEA-LERNGARARPITSGV--FEAEYLDKDKYG 110 (248)
T ss_pred CCCcE-----------eeCCcc---cCCHHHHHHHHHHHH-HHHHHHHHH-HHhCCCCcccccCce--EEEEECcCccCC
Confidence 44432 233333 2344555554 4566 678887665 899999999998752 3221 1233
Q ss_pred C-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCC
Q 018295 238 N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (358)
Q Consensus 238 ~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaD 316 (358)
. +++...+.+.+... ++.+.|||++| ++.+ .+|++.+++ +|..|+.+|.+|+|++++|.|||||||+.
T Consensus 111 ~~G~v~~i~~~~i~~~-----L~~g~IPVi~p-~~~~-~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~- 179 (248)
T cd04252 111 LVGKITGVNKAPIEAA-----IRAGYLPILTS-LAET-PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG- 179 (248)
T ss_pred ccCceeeECHHHHHHH-----HHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC-
Confidence 2 45555555555543 47899999998 7777 479999999 99999999999999999999999999964
Q ss_pred CCCCCCCcccCCcCH-HHHHHHHHC
Q 018295 317 PNIHPHAKPVPYLTF-DEAAELAYF 340 (358)
Q Consensus 317 P~~v~~Ak~i~~Lsy-~EA~eLa~~ 340 (358)
+.+++++|+. +++.+|...
T Consensus 180 -----~g~~i~~i~~~~~~~~l~~~ 199 (248)
T cd04252 180 -----TGKKISAINLDEEYDDLMKQ 199 (248)
T ss_pred -----CCCcccccCHHHHHHHHHHc
Confidence 3668999986 467677654
No 63
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.68 E-value=3.4e-16 Score=167.91 Aligned_cols=190 Identities=15% Similarity=0.252 Sum_probs=122.6
Q ss_pred CceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEc---CCCcCchHHHHHhHHHHhcCCCccchHHHH
Q 018295 80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLS---AMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e------~i~~Va~iI~~~--~~~~~vVVVS---A~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l 148 (358)
...+|+|||||++.+.+ .+.++++.|... .+.+.|+|+| |+|..+..+.+...
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~---------------- 70 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVN---------------- 70 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhcc----------------
Confidence 46799999999998754 899999988753 2345666777 56665554332110
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccce
Q 018295 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (358)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~ 228 (358)
.+... ..+..+...+-.+.+.|+..-..+....+...++. +.++
T Consensus 71 -------------~~~~~------------------~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~-----~aQ~ 114 (715)
T TIGR01092 71 -------------SSFAD------------------LQKPQPELDGKACAAVGQSGLMALYETMFTQLDIT-----AAQI 114 (715)
T ss_pred -------------ccccc------------------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eEEE
Confidence 00000 00001111122233445543344455556666655 4565
Q ss_pred EEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCc---------chHHHHHHHHHcC
Q 018295 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKALG 299 (358)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgG---------SD~tAa~LA~aL~ 299 (358)
++|.+++.+.+. +.+....+. .+++.+.|||+.+ ++.+++.++++ +|++|++||.+|+
T Consensus 115 -Llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVin~-------nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~ 181 (715)
T TIGR01092 115 -LVTDLDFRDEQF----RRQLNETVH-ELLRMNVVPVVNE-------NDAVSTRAAPYSDSQGIFWDNDSLAALLALELK 181 (715)
T ss_pred -EechhhcccHHH----HHHHHHHHH-HHHHCCCEEEEcC-------CCcccccccccccccceecchHHHHHHHHHHcC
Confidence 788877766543 222333333 3467899999975 34555555544 6999999999999
Q ss_pred CceEEEeecCCccccCCCCCCCCCcccCCcCHHHHH
Q 018295 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA 335 (358)
Q Consensus 300 A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~ 335 (358)
|+.++|+|||||||++||+ .|++++|++++..+..
T Consensus 182 Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~ 216 (715)
T TIGR01092 182 ADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQ 216 (715)
T ss_pred CCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchh
Confidence 9999999999999999997 6899999998865444
No 64
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.67 E-value=1.4e-15 Score=154.45 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=135.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
.+.|+|+||+.+.+. .+..+++.|.... .+.++|+|++.|..-+++++
T Consensus 18 ~~~ViK~GG~~~~~~-~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~------------------------------ 66 (429)
T TIGR01890 18 KTFVVGLGGELVEGG-NLGNIVADIALLHSLGVRLVLVHGARPQIERILA------------------------------ 66 (429)
T ss_pred CEEEEEEChhhccCc-cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH------------------------------
Confidence 689999999999774 3456666665432 23457788887766555543
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeE-----eeccceEEEeeC
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQ-----YDAFDIGFITTD 234 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~-----ld~~d~~iit~~ 234 (358)
.+++++ ++.+|+++ .++.+.+.+......+|..|.+ .|++. +++.+ +.+.|.++++..
T Consensus 67 -~~g~~~-----------~~~~G~Rv---T~~~~l~~~~~~~g~vn~~l~~-~l~~~-~~~~~~~~~~l~~~dg~~~~a~ 129 (429)
T TIGR01890 67 -ARGRTP-----------HYHRGLRV---TDEASLEQAQQAAGTLRLAIEA-RLSMS-LSNTPMAGSRLPVVSGNFVTAR 129 (429)
T ss_pred -HcCCCc-----------eeeCCccc---CCHHHHHHHHHHhChHHHHHHH-HHHhc-CCcccccccCceEccceEEEEE
Confidence 344444 24455544 4456665553334455777655 46655 44433 556666666643
Q ss_pred C--------CCC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEE
Q 018295 235 D--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (358)
Q Consensus 235 ~--------~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i 305 (358)
. ++. +++..++.+.+... ++.+.|||+++ ++.+ .+|++++++ +|..|+.||.+|+|+++++
T Consensus 130 ~~~~~~~~~~g~~G~v~~v~~~~l~~l-----l~~g~ipvi~p-i~~~-~~g~~~nvn---aD~~A~~lA~al~a~kli~ 199 (429)
T TIGR01890 130 PIGVIEGVDYEHTGVIRKIDTEGIRRQ-----LDAGSIVLLSP-LGHS-PTGETFNLD---MEDVATSVAISLKADKLIY 199 (429)
T ss_pred ECCCCcCccccccceEEEEcHHHHHHH-----HHCCCeEEECC-cccC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEE
Confidence 2 222 45555555555443 47789999988 8888 589999999 9999999999999999999
Q ss_pred eecCCccccCCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 306 ~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
+|||||||+. +.++|++|+.+|+.+|..
T Consensus 200 ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~ 227 (429)
T TIGR01890 200 FTLSPGISDP------DGTLAAELSPQEVESLAE 227 (429)
T ss_pred EeCCCcccCC------CCCCcccCCHHHHHHHHH
Confidence 9999999963 367899999999998865
No 65
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.67 E-value=1.1e-15 Score=147.49 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=95.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCcccc
Q 018295 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273 (358)
Q Consensus 194 ~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~ 273 (358)
+-.+.+.|+..-..+....|.++|+++ .++ ++|.++|.+.+. +.+....+ ..+++.+.|||+.|+-+..
T Consensus 94 ~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~-llt~~d~~~~~~----~~~~~~~l-~~lL~~g~iPVi~~nD~v~ 162 (284)
T cd04256 94 GRACAAVGQSGLMALYEAMFTQYGITV-----AQV-LVTKPDFYDEQT----RRNLNGTL-EELLRLNIIPIINTNDAVS 162 (284)
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCcH-----HHe-eeeccccccHHH----HHHHHHHH-HHHHHCCCEEEEeCCCccc
Confidence 344677888888888888999988874 566 788888876543 22333333 3446889999998621111
Q ss_pred -C----CCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHH
Q 018295 274 -W----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA 338 (358)
Q Consensus 274 -~----~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa 338 (358)
. .+|+..+ .-+.+|+.|+.+|.+++|+.++++|||||||++||+ .|++++|++++..|..+++
T Consensus 163 ~~~~~~~~~~~~~-~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~ 230 (284)
T cd04256 163 PPPEPDEDLQGVI-SIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSIT 230 (284)
T ss_pred ccccccccccccc-cccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhh
Confidence 0 0121111 113589999999999999999999999999999997 5999999999988876664
No 66
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.66 E-value=2.4e-15 Score=144.08 Aligned_cols=184 Identities=12% Similarity=0.119 Sum_probs=131.5
Q ss_pred CCCceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHH
Q 018295 78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (358)
Q Consensus 78 ~~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (358)
.++...|+|+||+.+.+++.+..++.-|.-.. +-++|+ |++.+...+.+++ .
T Consensus 33 ~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~Vl-VHGggp~i~~~l~--------~----------------- 86 (271)
T cd04236 33 DWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLV-VMGLSAPDGTNMS--------D----------------- 86 (271)
T ss_pred CCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEE-EeCCChHHhhhhc--------C-----------------
Confidence 46688999999999999888888888876542 456554 4455543332221 0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC-
Q 018295 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (358)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~- 234 (358)
... ...+. + +. ..|..| ...|++.|++|+++.+.. ++++.+
T Consensus 87 --------~~~------------------------~~~~~-v--~~-~~n~~L-v~~L~~~G~~A~gl~g~~-~~i~a~~ 128 (271)
T cd04236 87 --------LEL------------------------QAARS-R--LV-KDCKTL-VEALQANSAAAHPLFSGE-SVLQAEE 128 (271)
T ss_pred --------Ccc------------------------hheeh-h--HH-HHHHHH-HHHHHhCCCCeeeecCcc-ceEEEEE
Confidence 000 00111 1 12 345554 446899999999999885 366543
Q ss_pred --CCC-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 235 --DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 235 --~~~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
+++ .+++..++.+.++.. ++++.|||+++ +|.+ .+|++.+++ +|..|+.||.+|+|++++|+||++|
T Consensus 129 ~~d~g~vG~V~~Vd~~~I~~l-----L~~g~IPVisp-lg~~-~~G~~~NiN---aD~~A~~lA~aL~A~KLIfltd~~G 198 (271)
T cd04236 129 PEPGASKGPSVSVDTELLQWC-----LGSGHIPLVCP-IGET-SSGRSVSLD---SSEVTTAIAKALQPIKVIFLNRSGG 198 (271)
T ss_pred cccCCccceEEEECHHHHHHH-----HhCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 222 245655666655543 47899999999 8888 589999999 9999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCH-HHHHHHHHCC
Q 018295 312 VLTCDPNIHPHAKPVPYLTF-DEAAELAYFG 341 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy-~EA~eLa~~G 341 (358)
||+. +.+++++|+. +|+.+|...|
T Consensus 199 V~~~------~g~lI~~l~~~~e~~~li~~g 223 (271)
T cd04236 199 LRDQ------KHKVLPQVHLPADLPSLSDAE 223 (271)
T ss_pred eECC------CCCCccccCcHHHHHHHHhCC
Confidence 9973 3568999995 9999987763
No 67
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.65 E-value=5e-15 Score=142.65 Aligned_cols=197 Identities=19% Similarity=0.261 Sum_probs=130.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
.+.|.|+||+.+.+. .++++++.|.... .+.++|+|++.|..-+++++
T Consensus 19 ~~~VIKlGG~ai~~~-~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~------------------------------ 67 (280)
T cd04237 19 KTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLA------------------------------ 67 (280)
T ss_pred CEEEEEEChHHhcCc-hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHH------------------------------
Confidence 579999999999764 4556666665432 23456677777666555443
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeecc-----ceEEEee
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAF-----DIGFITT 233 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~-----d~~iit~ 233 (358)
.+++++ ++.+|++ ..++.+.+.+ .++|+. +..| .+.|++ |++++++.+. +..++..
T Consensus 68 -~~gi~~-----------~~~~G~R---vT~~~~l~~~~~~~g~v-~~~l-~~~l~~-~~~a~~~~~~~~~~~~~~~v~~ 129 (280)
T cd04237 68 -ERGLEP-----------RYHRGLR---ITDAAALECVKEAAGAV-RLEI-EALLSM-GLPNSPMAGARIRVVSGNFVTA 129 (280)
T ss_pred -HcCCCc-----------cccCCcC---cCCHHHHHHHHHHHHHH-HHHH-HHHHHh-hccccCcCCCceEEecCeEEEE
Confidence 233333 1234433 2344555544 445665 6665 455655 8888755432 2223333
Q ss_pred CCCC---------CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEE
Q 018295 234 DDFT---------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (358)
Q Consensus 234 ~~~~---------~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~ 304 (358)
...+ .+++...+.+.++. +++++.|||+.+ +|.+ .+|+.++++ +|..|+.||.+|+|++++
T Consensus 130 ~~~~~~~~~~~g~~G~v~~v~~~~i~~-----lL~~g~ipv~~~-~g~~-~~g~~lnvn---aD~~A~~LA~~L~a~klv 199 (280)
T cd04237 130 RPLGVVDGVDFGHTGEVRRIDADAIRR-----QLDQGSIVLLSP-LGYS-PTGEVFNLS---MEDVATAVAIALKADKLI 199 (280)
T ss_pred EECCcccCceEeeeccEEEEcHHHHHH-----HHHCCCEEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHHcCCCEEE
Confidence 2211 13444444454444 347788999988 7777 489999999 999999999999999999
Q ss_pred EeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCC
Q 018295 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA 342 (358)
Q Consensus 305 i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~Ga 342 (358)
|.|||||||+. +.+++++|+.+|+.++...|.
T Consensus 200 ~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~ 231 (280)
T cd04237 200 FLTDGPGLLDD------DGELIRELTAQEAEALLETGA 231 (280)
T ss_pred EEeCCCcccCC------CCCccccCCHHHHHHHHHcCC
Confidence 99999999973 367899999999999987654
No 68
>PLN02825 amino-acid N-acetyltransferase
Probab=99.64 E-value=5e-15 Score=152.96 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=144.7
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
+.+.|+||||+.+.++ .+.+++..|.... -+-++|+|++.+...|.+++.
T Consensus 17 gktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~---------------------------- 67 (515)
T PLN02825 17 GSTFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAE---------------------------- 67 (515)
T ss_pred CCEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHH----------------------------
Confidence 4679999999999887 6788877776432 234466777777766666542
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHH--------HHHHcCCce----eEeecc
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAA--------YLNKIGVKA----RQYDAF 226 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~--------~L~~~Gi~A----~~ld~~ 226 (358)
+++++ ++.+|++++ ++.+.+.++.....++..|.+. .|+++|+++ ..+.+.
T Consensus 68 ---~gi~~-----------~f~~G~RVT---d~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~ 130 (515)
T PLN02825 68 ---RGREP-----------KYVGAYRIT---DSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVA 130 (515)
T ss_pred ---cCCCc-----------eeeCCcccC---CHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEec
Confidence 33343 234454443 3455555544455567777764 489999999 788888
Q ss_pred ceEEEeeCCC--------CC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHH
Q 018295 227 DIGFITTDDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (358)
Q Consensus 227 d~~iit~~~~--------~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~a 297 (358)
+.++++.... +. ++|..++.+.++.. ++++.|||+++ +|.+ .+|++.|++ +|..|+.+|.+
T Consensus 131 ~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~-----L~~g~Ipvisp-lg~s-~~Ge~~Nin---aD~vA~avA~a 200 (515)
T PLN02825 131 SGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKER-----LDSNCIVLLSN-LGYS-SSGEVLNCN---TYEVATACALA 200 (515)
T ss_pred cCcEEEEEECCCCcCccccceeeEEEEcHHHHHHH-----HhCCCeEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHH
Confidence 8878887533 22 45555555555543 47899999998 8998 589999999 99999999999
Q ss_pred cCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 298 L~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
|+|++++++|||+ +++. +.+++++|+.+|+.+|...+
T Consensus 201 L~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~ 237 (515)
T PLN02825 201 IGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKR 237 (515)
T ss_pred cCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhh
Confidence 9999999999987 5543 35689999999999998643
No 69
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.64 E-value=6.2e-15 Score=140.91 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=86.7
Q ss_pred HHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCC
Q 018295 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT 276 (358)
Q Consensus 197 Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~ 276 (358)
..+.|...-..++...|.++|+++..+ +++..++.+.. .+.+..+.+. .+++.+.|||+.|.-.. ..
T Consensus 75 ~aaiGq~~L~~~y~~~f~~~~~~~aqi------Llt~~d~~~~~----~~~n~~~~l~-~lL~~g~VPIinend~~--~~ 141 (264)
T PTZ00489 75 LASMGQPLLMHMYYTELQKHGILCAQM------LLAAYDLDSRK----RTINAHNTIE-VLISHKVIPIINENDAT--AL 141 (264)
T ss_pred HHHhCHHHHHHHHHHHHHhCCCeEEEe------eeeccccccch----hhHHHHHHHH-HHHHCCCEEEECCCCCc--cc
Confidence 445666445566788899999987544 45544443311 1222333333 34678999999882211 11
Q ss_pred CcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcc---cCCcCHHHHHH
Q 018295 277 CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP---VPYLTFDEAAE 336 (358)
Q Consensus 277 G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~---i~~Lsy~EA~e 336 (358)
.+.. -|.+|..|+++|..++|+.++|+|||||||++||+.+|+|++ +++++.++...
T Consensus 142 ~e~~---~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~ 201 (264)
T PTZ00489 142 HELV---FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVA 201 (264)
T ss_pred ceeE---eCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHH
Confidence 2333 234899999999999999999999999999999999999998 78888876643
No 70
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.61 E-value=1.2e-14 Score=148.00 Aligned_cols=194 Identities=19% Similarity=0.274 Sum_probs=129.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
.++|.|+||+.+.+. .++++++.|.... .+.++|+|++.+..-+.+++
T Consensus 26 ~~~VIk~GG~~l~~~-~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~------------------------------ 74 (441)
T PRK05279 26 KTFVIMLGGEAIAHG-NFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLA------------------------------ 74 (441)
T ss_pred CEEEEEECchhccCh-hHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH------------------------------
Confidence 579999999999775 3556666665432 23456777777766555543
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceE-----EEee
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIG-----FITT 233 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~-----iit~ 233 (358)
.+++++ ++.+|++. .++.+.+.+ +.+| .+|..| .+.|+ +|++++++.+..+. ++..
T Consensus 75 -~~g~~~-----------~~~~G~Rv---T~~~~l~~~~~~~g-~v~~~l-~~~l~-~g~~a~~~~~~~~~~~~~~~~~~ 136 (441)
T PRK05279 75 -ARGIEP-----------RYHKGLRV---TDAAALECVKQAAG-ELRLDI-EARLS-MGLPNTPMAGAHIRVVSGNFVTA 136 (441)
T ss_pred -HcCCCc-----------eecCCccc---CCHHHHHHHHHHHH-HHHHHH-HHHHh-ccCCCCcccCCcceEeeccEEEE
Confidence 233333 23345443 344555444 4456 667776 44565 49998886554431 2222
Q ss_pred CC--------CCC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEE
Q 018295 234 DD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (358)
Q Consensus 234 ~~--------~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~ 304 (358)
.. ++. +++...+.+.++. +++++.|||+++ ++.+ .+|++.+++ +|..|+.||.+|+|++++
T Consensus 137 ~~~~~~~~~~~g~~G~v~~v~~~~i~~-----ll~~g~ipV~~~-i~~~-~~g~~~ni~---~D~~a~~lA~~l~a~~lv 206 (441)
T PRK05279 137 RPLGVDDGVDYQHTGEVRRIDAEAIRR-----QLDSGAIVLLSP-LGYS-PTGESFNLT---MEEVATQVAIALKADKLI 206 (441)
T ss_pred EECCCCCCccccceeeEEEEeHHHHHH-----HHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 11 111 2343344444443 347889999955 8887 479999999 999999999999999999
Q ss_pred EeecCCccccCCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 305 i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
|+|||||||+. +++++++|+.+|+.++..
T Consensus 207 ~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~ 235 (441)
T PRK05279 207 FFTESQGVLDE------DGELIRELSPNEAQALLE 235 (441)
T ss_pred EEECCCCccCC------CCchhhhCCHHHHHHHHh
Confidence 99999999953 478899999999988875
No 71
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.57 E-value=2e-13 Score=127.08 Aligned_cols=125 Identities=20% Similarity=0.255 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEee
Q 018295 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 203 ~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttl 282 (358)
+|+.. ++..|.+.|+.++...|... ... ++++.....+.+... ++.+.|||++|.+-.+. +.-...+
T Consensus 81 ~L~~~-V~~~l~~~Gv~av~~~P~s~-~~~-----~gr~~~~~l~~i~~~-----l~~gfvPvl~GDVv~d~-~~g~~Ii 147 (252)
T COG1608 81 ELNSI-VVDALLDAGVRAVSVVPISF-STF-----NGRILYTYLEAIKDA-----LEKGFVPVLYGDVVPDD-DNGYEII 147 (252)
T ss_pred HHHHH-HHHHHHhcCCccccccCcce-eec-----CCceeechHHHHHHH-----HHcCCEeeeecceEEcC-CCceEEE
Confidence 34444 56779999999988778774 221 223322112333333 47899999999999874 3334556
Q ss_pred CCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcC--------------------HHHHHHHHHCCC
Q 018295 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT--------------------FDEAAELAYFGA 342 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Ls--------------------y~EA~eLa~~Ga 342 (358)
. .|..+..||+.|++++++|.|||||||+.||+++|+++.++++. .+++.+++..|.
T Consensus 148 S---GDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~ 224 (252)
T COG1608 148 S---GDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGK 224 (252)
T ss_pred e---ccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCc
Confidence 6 69999999999999999999999999999999999999998877 456777777666
Q ss_pred C
Q 018295 343 Q 343 (358)
Q Consensus 343 k 343 (358)
.
T Consensus 225 ~ 225 (252)
T COG1608 225 E 225 (252)
T ss_pred e
Confidence 5
No 72
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.52 E-value=3.1e-13 Score=131.94 Aligned_cols=190 Identities=22% Similarity=0.392 Sum_probs=130.5
Q ss_pred CCceEEEEeCccccCCH------HHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 79 KQLTCVMKFGGSSLASA------ERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s~------e~i~~Va~iI~~~-~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
..+.+|.|+|-|++.++ +.+..+++-|... ..++.||+||... + .+ +.
T Consensus 5 ~~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-i-----aa-------G~------------ 59 (369)
T COG0263 5 SARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-I-----AA-------GR------------ 59 (369)
T ss_pred cceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-h-----hh-------Ch------------
Confidence 34679999999998764 5666777666654 3456788887532 1 00 10
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
..|+.+.. ...-..+-.+.+.|...-.......|..+|+++-. + ++
T Consensus 60 --------~~Lg~~~r--------------------p~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~Q-----i-LL 105 (369)
T COG0263 60 --------TRLGLPKR--------------------PKTLAEKQAAAAVGQVRLMQLYEELFARYGIKVGQ-----I-LL 105 (369)
T ss_pred --------hhcCCCCC--------------------CcchHHHHHHHHhCHHHHHHHHHHHHHhcCCeeeE-----E-Ee
Confidence 12333320 11112334456677777777788899999998654 3 77
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEe--eCCCcchHHHHHHHHHcCCceEEEeecC
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~LA~aL~A~~l~i~TDV 309 (358)
|.+++.+.+ .|.+.+..|.. |++.+.|||| | +|.-+.+ +--|..|..++++|...+||.++++||+
T Consensus 106 Tr~D~~~r~----ry~Nar~Tl~~-Ll~~gvVPII------N-ENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDi 173 (369)
T COG0263 106 TRDDFSDRR----RYLNARNTLSA-LLELGVVPII------N-ENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDI 173 (369)
T ss_pred ehhhhhhHH----HHHHHHHHHHH-HHHCCceeee------c-CCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEcc
Confidence 777665432 35556666543 4688999999 3 3444433 5667789999999999999999999999
Q ss_pred CccccCCCCCCCCCcccCCcCH--HHHHHHHH
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY 339 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy--~EA~eLa~ 339 (358)
||+||+||+.+|+|++|++++- .|...++-
T Consensus 174 DGLyd~nPr~~pdAk~i~~V~~it~ei~~~ag 205 (369)
T COG0263 174 DGLYDANPRTNPDAKLIPEVEEITPEIEAMAG 205 (369)
T ss_pred CcccCCCCCCCCCCeeehhhcccCHHHHHHhc
Confidence 9999999999999999998872 34444443
No 73
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.50 E-value=4.6e-13 Score=130.94 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=88.6
Q ss_pred HHhHHHHHHHHHHHHHHHcCCce-------eEeeccceEEEeeCC-CC----------------------C-ce----ee
Q 018295 198 VSFGECMSTRIFAAYLNKIGVKA-------RQYDAFDIGFITTDD-FT----------------------N-AD----IL 242 (358)
Q Consensus 198 ls~GE~lSa~Lla~~L~~~Gi~A-------~~ld~~d~~iit~~~-~~----------------------~-a~----i~ 242 (358)
..+|..++..|. ..|.++|.++ +.+++.|..|++..+ .| + ++ +.
T Consensus 87 g~i~~~i~~~L~-~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv 165 (316)
T PRK12352 87 GGIGYLIQQALN-NRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVV 165 (316)
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEec
Confidence 345677777764 5688888664 677877766652211 00 0 00 00
Q ss_pred --ccchHHHHHHHhhchhcCCceEEEcC----CccccC---CCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccc
Q 018295 243 --EATYPAVAKRLHGDWITDLAIPIVTG----FLGKAW---RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (358)
Q Consensus 243 --~~~~~~i~~~l~~~ll~~~~IpVv~G----fig~~~---~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVy 313 (358)
....+.++..++..+++++.|+|.+| .++.+. ..|...+++ .|..|+.+|.+|+|++++|+|||+|||
T Consensus 166 ~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nIn---aD~aAa~iA~aL~AdkLI~LTDV~GV~ 242 (316)
T PRK12352 166 ASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVID---KDLSTALLAREIHADILVITTGVEKVC 242 (316)
T ss_pred CCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeec---HHHHHHHHHHHhCCCEEEEEeCchhhc
Confidence 00012233334444567888844431 122221 123344466 899999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 314 TCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 314 taDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
..+|+ |+++++++++.+|+.++...|
T Consensus 243 ~d~~~--~~~~li~~lt~~e~~~li~~g 268 (316)
T PRK12352 243 IHFGK--PQQQALDRVDIATMTRYMQEG 268 (316)
T ss_pred cCCCC--CCcccccccCHHHHHHHHhcC
Confidence 88754 678899999999999998754
No 74
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.50 E-value=3.8e-13 Score=131.59 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=64.2
Q ss_pred hhchhcCCceEEEcCCc--cccCCCCcEEeeC-CCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcC
Q 018295 254 HGDWITDLAIPIVTGFL--GKAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (358)
Q Consensus 254 ~~~ll~~~~IpVv~Gfi--g~~~~~G~~ttlg-RgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Ls 330 (358)
...+++.+.|||++|.- +....++.+.+.. -+.+|..|+.+|.+|+|++++++|||||||++||+ |+++++++++
T Consensus 178 i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~--~~a~~i~~i~ 255 (314)
T PRK12353 178 IKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGK--PNQKKLDEVT 255 (314)
T ss_pred HHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCC--CCCeECcCcC
Confidence 33446889999999862 1111133322211 13379999999999999999999999999997663 8999999999
Q ss_pred HHHHHHHHHC
Q 018295 331 FDEAAELAYF 340 (358)
Q Consensus 331 y~EA~eLa~~ 340 (358)
++|+.++...
T Consensus 256 ~~e~~~~~~~ 265 (314)
T PRK12353 256 VSEAEKYIEE 265 (314)
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 75
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.48 E-value=9.4e-13 Score=121.30 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=73.6
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCC
Q 018295 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269 (358)
Q Consensus 190 s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gf 269 (358)
++...|++....-.+|+.+++..+...+ ..+...+... +..+.|||+.++
T Consensus 50 ~~~~ad~mgilat~~na~~l~~~~~~~~-------------------------~~~~~~~~~~-----~~~g~ipV~~P~ 99 (203)
T cd04240 50 SDAAAHWMAILAMEQYGYLLADLEPRLV-------------------------ARTLAELTDV-----LERGKIAILLPY 99 (203)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccCCccc-------------------------cCCHHHHHHH-----HHCCCcEEEeCc
Confidence 3567788888888888887653221111 0011223333 256789999874
Q ss_pred cc---ccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHH
Q 018295 270 LG---KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA 335 (358)
Q Consensus 270 ig---~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~ 335 (358)
-- .+ ..++..+++ +|..|+.+|..|+|+++++.|||||||+.| ++++++++++|+.
T Consensus 100 ~~~~~~~-~~~~~~~~t---tD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~ 158 (203)
T cd04240 100 RLLLDTD-PLPHSWEVT---SDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELL 158 (203)
T ss_pred hhhcccC-CCCcccccC---HHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhC
Confidence 21 01 134445555 999999999999999999999999999865 8899999988764
No 76
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.44 E-value=6.1e-12 Score=122.51 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=74.1
Q ss_pred chhcCCceEEEcCCccccC--CCCcEEeeC-CCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHH
Q 018295 256 DWITDLAIPIVTGFLGKAW--RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (358)
Q Consensus 256 ~ll~~~~IpVv~Gfig~~~--~~G~~ttlg-RgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~ 332 (358)
.+++++.|||+.|.-|... .+|...+.. -...|++|+++|..|+|+.++++|||||||+.+| .|++++|+++|++
T Consensus 176 ~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~ 253 (308)
T cd04235 176 TLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVE 253 (308)
T ss_pred HHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHH
Confidence 3467899999998522110 123222211 1225999999999999999999999999999654 3899999999999
Q ss_pred HHHHHHH---CCCCcccHh---hHHHHHhc
Q 018295 333 EAAELAY---FGAQVYIFE---AVNVIELC 356 (358)
Q Consensus 333 EA~eLa~---~GakVLHP~---ai~~a~~~ 356 (358)
|+.++.. ++.--++|+ +++.+++.
T Consensus 254 e~~~l~~~g~~~tGGM~pKv~aA~~~a~~g 283 (308)
T cd04235 254 ELEKYIEEGQFAPGSMGPKVEAAIRFVESG 283 (308)
T ss_pred HHHHHHhcCccccCCcHHHHHHHHHHHHhC
Confidence 9999985 566678998 77777664
No 77
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.38 E-value=4.1e-12 Score=127.98 Aligned_cols=158 Identities=21% Similarity=0.327 Sum_probs=109.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
.+.|+|+||+.+.+. +..+++.|.... -+..+|||++.|..-|.+++
T Consensus 37 ~~~VIKiGG~~l~~~--~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~------------------------------ 84 (398)
T PRK04531 37 RFAVIKVGGAVLRDD--LEALASSLSFLQEVGLTPIVVHGAGPQLDAELD------------------------------ 84 (398)
T ss_pred cEEEEEEChHHhhcC--HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHH------------------------------
Confidence 789999999999753 456665555432 23446677777776665554
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCC
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~ 238 (358)
.+|++++ +++|++++ ++.+.+.+ ..++ ..|..|+.+
T Consensus 85 -~~gie~~-----------~v~G~RVT---d~~tl~vv~~~l~-~vn~~lv~~--------------------------- 121 (398)
T PRK04531 85 -AAGIEKE-----------TVNGLRVT---SPEALAIVRKVFQ-RSNLDLVEA--------------------------- 121 (398)
T ss_pred -HcCCCcE-----------EECCEecC---CHHHHHHHHHHHH-HHHHHHHHH---------------------------
Confidence 2344432 34444433 35555554 3445 556655544
Q ss_pred ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCC
Q 018295 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (358)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~ 318 (358)
++.. ++.|.|||+++ +|.+ .+|++.+++ +|..|+.||.+|+|++++++|||+|||+.|
T Consensus 122 ----------I~~~-----L~~g~IPVlsp-lg~~-~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~-- 179 (398)
T PRK04531 122 ----------VESS-----LRAGSIPVIAS-LGET-PSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD-- 179 (398)
T ss_pred ----------HHHH-----HHCCCEEEEeC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC--
Confidence 1222 36889999988 6777 589999999 999999999999999999999999999743
Q ss_pred CCCCCcccCCcCH-HHHHHHHH
Q 018295 319 IHPHAKPVPYLTF-DEAAELAY 339 (358)
Q Consensus 319 ~v~~Ak~i~~Lsy-~EA~eLa~ 339 (358)
.++++.|+. +|...|..
T Consensus 180 ----g~~i~~i~~~~e~~~l~~ 197 (398)
T PRK04531 180 ----GKLISSINLSTEYDHLMQ 197 (398)
T ss_pred ----CCCcccCCHHHHHHHHHh
Confidence 678899986 56666654
No 78
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.37 E-value=3.3e-11 Score=117.72 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=59.8
Q ss_pred hchhcCCceEEEcCCcc--ccCCCCcEEee-CCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCH
Q 018295 255 GDWITDLAIPIVTGFLG--KAWRTCAITTL-GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (358)
Q Consensus 255 ~~ll~~~~IpVv~Gfig--~~~~~G~~ttl-gRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy 331 (358)
..+++.+.|+|.+|.-| .-.++|.+... --+..|..|+.+|.+|+||.++++|||||||+++ ..|++++++++++
T Consensus 176 ~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~~it~ 253 (310)
T TIGR00746 176 KTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALREVTV 253 (310)
T ss_pred HHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCcCcCH
Confidence 33457787666655322 11123333211 0134899999999999999999999999999964 3478999999999
Q ss_pred HHHHHHHH
Q 018295 332 DEAAELAY 339 (358)
Q Consensus 332 ~EA~eLa~ 339 (358)
+|+.++..
T Consensus 254 ~e~~~~~~ 261 (310)
T TIGR00746 254 EELEDYYK 261 (310)
T ss_pred HHHHHHHh
Confidence 99999874
No 79
>PRK12686 carbamate kinase; Reviewed
Probab=99.32 E-value=3.9e-11 Score=117.02 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=65.6
Q ss_pred HhhchhcCCceEEEcCCcc--ccCCCCcEEeeC-CCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCc
Q 018295 253 LHGDWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (358)
Q Consensus 253 l~~~ll~~~~IpVv~Gfig--~~~~~G~~ttlg-RgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~L 329 (358)
.++.+++.+.|||.+|.-| .-..++....+. -+..|..|+.||.+|+|+.++|+|||||||+ ||+ .|++++|+++
T Consensus 175 ~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I~~I 252 (312)
T PRK12686 175 TIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKLDDI 252 (312)
T ss_pred HHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeECCcc
Confidence 3444568899999987622 111234443332 2347999999999999999999999999999 455 4789999999
Q ss_pred CHHHHHHHHHCC
Q 018295 330 TFDEAAELAYFG 341 (358)
Q Consensus 330 sy~EA~eLa~~G 341 (358)
+.+|+.++...|
T Consensus 253 ~~~e~~~li~~g 264 (312)
T PRK12686 253 TVAEAKQYIAEG 264 (312)
T ss_pred CHHHHHHHhhCC
Confidence 999999987644
No 80
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.19 E-value=1.8e-09 Score=105.45 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=64.3
Q ss_pred chhcCCceEEEcCCcc---ccCCCCcEEeeC-CCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCH
Q 018295 256 DWITDLAIPIVTGFLG---KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (358)
Q Consensus 256 ~ll~~~~IpVv~Gfig---~~~~~G~~ttlg-RgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy 331 (358)
.+++++.|||++|.-| .+ .+|++.++. -...|.+|+.||..|+|+.++|+|||||||++ |+ .|++++++++++
T Consensus 180 ~LLe~G~IvI~~GgGGiPV~~-~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It~ 256 (313)
T PRK12454 180 ALVENGFIVIASGGGGIPVIE-EDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVTV 256 (313)
T ss_pred HHHHCCCEEEEeCCCccceEc-CCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccCH
Confidence 3457899999998531 23 245554432 12269999999999999999999999999986 43 478999999999
Q ss_pred HHHHHHHHCC
Q 018295 332 DEAAELAYFG 341 (358)
Q Consensus 332 ~EA~eLa~~G 341 (358)
+|+.++...|
T Consensus 257 ~e~~~~i~~g 266 (313)
T PRK12454 257 EEAKKYYEEG 266 (313)
T ss_pred HHHHHHHhcC
Confidence 9999987644
No 81
>PRK12354 carbamate kinase; Reviewed
Probab=99.12 E-value=1.7e-09 Score=105.27 Aligned_cols=91 Identities=21% Similarity=0.130 Sum_probs=63.2
Q ss_pred hhchhcCCceEEEcCCccc----cCCCCcEEeeC-CCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCC
Q 018295 254 HGDWITDLAIPIVTGFLGK----AWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPY 328 (358)
Q Consensus 254 ~~~ll~~~~IpVv~Gfig~----~~~~G~~ttlg-RgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~ 328 (358)
+..+++++.|||..|.=|. + ..|...... -...|.+|+.||.+|+|+.++|+|||||||++++ .|++++|++
T Consensus 168 I~~Ll~~g~ivIa~GGGGIPV~~~-~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~ 244 (307)
T PRK12354 168 IRWLLEKGHLVICAGGGGIPVVYD-ADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQ 244 (307)
T ss_pred HHHHHHCCCEEEEeCCCccCeEec-CCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCC
Confidence 3344578888777542221 1 123222221 2347999999999999999999999999999754 478999999
Q ss_pred cCHHHHHHHHHCCCCcccHh
Q 018295 329 LTFDEAAELAYFGAQVYIFE 348 (358)
Q Consensus 329 Lsy~EA~eLa~~GakVLHP~ 348 (358)
++++|+.++ .|+.==+-|+
T Consensus 245 it~~e~~~~-~f~~GgM~pK 263 (307)
T PRK12354 245 ATPDELREL-GFAAGSMGPK 263 (307)
T ss_pred CCHHHHHhh-CCCcCChHHH
Confidence 999999887 4433333343
No 82
>PRK09411 carbamate kinase; Reviewed
Probab=98.94 E-value=2.3e-08 Score=96.81 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=62.1
Q ss_pred hhchhcCCceEEEcCC----ccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCc
Q 018295 254 HGDWITDLAIPIVTGF----LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (358)
Q Consensus 254 ~~~ll~~~~IpVv~Gf----ig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~L 329 (358)
++.+++++.|||.+|. ++.+ .+|...+++ .|.+|+.||.+|+|++++|+|||||||+.++ .|++++|+++
T Consensus 169 I~~Ll~~G~IVI~~gGGGIPV~~~-~~G~e~vID---kD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~i 242 (297)
T PRK09411 169 IELLLKEGHVVICSGGGGVPVTED-GAGSEAVID---KDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHA 242 (297)
T ss_pred HHHHHHCCCEEEecCCCCCCeEEc-CCCeEEecC---HHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCc
Confidence 3344578888877643 2222 235555566 8999999999999999999999999998653 5789999999
Q ss_pred CHHHHHHHHH
Q 018295 330 TFDEAAELAY 339 (358)
Q Consensus 330 sy~EA~eLa~ 339 (358)
+.+|+.++..
T Consensus 243 t~~e~~~~~~ 252 (297)
T PRK09411 243 TPDELAPFAK 252 (297)
T ss_pred CHHHHHHhcc
Confidence 9999987754
No 83
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=98.71 E-value=1.8e-07 Score=87.21 Aligned_cols=106 Identities=19% Similarity=0.347 Sum_probs=71.8
Q ss_pred HHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEe--eCCCc
Q 018295 209 FAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGG 286 (358)
Q Consensus 209 la~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~tt--lgRgG 286 (358)
.-..+.+.|+....+ ++|..++.+ +..+.+++..+. .++.-+.|||+-- |..+.+ ..+|.
T Consensus 104 ye~lF~Qy~~~iAQv------LvT~~Di~d----~~~r~Nl~~Ti~-eLL~m~viPIvNe-------NDavs~~~~~~~D 165 (285)
T KOG1154|consen 104 YETLFTQYGITIAQV------LVTRNDILD----EQQRKNLQNTIS-ELLSMNVIPIVNE-------NDAVSPREIPFGD 165 (285)
T ss_pred HHHHHHHhccchhee------eecCcchhh----HHHHHHHHHHHH-HHHhCCceeeecC-------CCccCCcccccCC
Confidence 455688899886543 677655433 233556666654 3467889999932 222111 33344
Q ss_pred ---chHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHH
Q 018295 287 ---SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333 (358)
Q Consensus 287 ---SD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~E 333 (358)
.|..|+++|..++||.++++|||||+||..|. ...+++++..+..+
T Consensus 166 ~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd-~~~~~li~~~~~~~ 214 (285)
T KOG1154|consen 166 SSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPD-ADPSKLIHTFSPGD 214 (285)
T ss_pred CCcccHHHHHHHHHhccCEEEEEecccccccCCCC-CCcceeeeeeccCC
Confidence 79999999999999999999999999995554 34567777666443
No 84
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.36 E-value=1.4e-05 Score=72.25 Aligned_cols=65 Identities=23% Similarity=0.219 Sum_probs=51.0
Q ss_pred CcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHh
Q 018295 277 CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIEL 355 (358)
Q Consensus 277 G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~ 355 (358)
.++| ||..+..+|+.+++.++++.|||||||+.+|+ ++++++|+..|... |-..++|-+=.++..
T Consensus 114 W~VT------SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k 178 (212)
T COG2054 114 WEVT------SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVK 178 (212)
T ss_pred eeec------ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHH
Confidence 4777 99999999999999999999999999998864 58888888776554 555555554444443
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=97.79 E-value=7.9e-05 Score=71.67 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred HhhchhcCCceEEEcCCccccCCCCcEEeeCCCc---------chHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCC
Q 018295 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHA 323 (358)
Q Consensus 253 l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgG---------SD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~A 323 (358)
..+.|++++.++|..|- .|-++.-..+| -|++++.||..++||.++|+||||+||-.--+ |+.
T Consensus 176 ~Ik~L~~~g~vVI~~GG------GGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p~q 247 (312)
T COG0549 176 AIKALLESGHVVIAAGG------GGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--PNQ 247 (312)
T ss_pred HHHHHHhCCCEEEEeCC------CCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--ccc
Confidence 34445678888888771 23322222221 39999999999999999999999999976543 688
Q ss_pred cccCCcCHHHHHHHHHCC
Q 018295 324 KPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 324 k~i~~Lsy~EA~eLa~~G 341 (358)
+.+.+++.+|+.+....|
T Consensus 248 ~~L~~v~~~e~~~yl~eg 265 (312)
T COG0549 248 QALDRVTVDEMEKYLAEG 265 (312)
T ss_pred hhhcccCHHHHHHHHhcC
Confidence 999999999998876643
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0014 Score=67.24 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHHHHHHHcCCceeEeeccceE--EEeeCC--------CCC-ceeeccchHHHHHHHhhchhcCCceEEEc
Q 018295 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIG--FITTDD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVT 267 (358)
Q Consensus 199 s~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~--iit~~~--------~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~ 267 (358)
-+||.- ..++. .|++.|-.+++.+..... +++.+. |+. +++...+.+++... ++.|.+|++.
T Consensus 170 ~~~E~n-~~lv~-nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l-----~~~G~mp~L~ 242 (520)
T KOG2436|consen 170 VSLEAN-LNLVI-NLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHL-----LDAGSMPLLR 242 (520)
T ss_pred chhhhh-hHHHH-HHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhh-----hhCCCchheh
Confidence 346763 33444 588888888877665321 334332 221 23334455555543 4778999988
Q ss_pred CCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 268 GFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 268 Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
- .+.+ .+|+++|.+ +|..|+.+|.+|+|+++++.+|+.=+...+| ..++.|+.+|...+-.
T Consensus 243 s-la~T-aSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~g~~l~e~g------e~~S~l~l~~e~~~l~ 303 (520)
T KOG2436|consen 243 S-LAAT-ASGQVLNVN---ADEVAGELALALGPDKLILLMDKGRILKENG------EDISSLILQEEDAGLR 303 (520)
T ss_pred h-hccc-CccceEEee---HHHHhhHHHhccCcceeEEecccccccccCc------ccccccccchhHhhhh
Confidence 7 7777 589999999 9999999999999999999999833444444 4456666666555544
No 87
>PRK03670 competence damage-inducible protein A; Provisional
Probab=68.02 E-value=21 Score=34.16 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+..++..|.+.|++..... ++.++ .+.|.+.+...+.....+.|++|-+|.+.
T Consensus 20 tN~~~la~~L~~~G~~v~~~~-----iV~Dd-----------~~~I~~~l~~a~~~~~DlVIttGGlGpt~--------- 74 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRIT-----TVGDD-----------VEEIKSVVLEILSRKPEVLVISGGLGPTH--------- 74 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEE-----EcCCC-----------HHHHHHHHHHHhhCCCCEEEECCCccCCC---------
Confidence 366778888999999865421 22221 23455555432222357888888777652
Q ss_pred CCcchHHHHHHHHHcCCc
Q 018295 284 RGGSDLTATTIGKALGLQ 301 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~A~ 301 (358)
-|.|.-.+|.++|-.
T Consensus 75 ---dD~T~eava~a~g~~ 89 (252)
T PRK03670 75 ---DDVTMLAVAEALGRE 89 (252)
T ss_pred ---CCchHHHHHHHhCCC
Confidence 588899999998853
No 88
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=64.52 E-value=36 Score=29.06 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+.+++..|++.|+...... ++.+ +.+.+.+.+.. ++++..+.|++|-.|.+.
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~l~~-~~~~~D~VittGG~g~~~--------- 70 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYG-----IVPD-----------DPDAIKEALRR-ALDRADLVITTGGTGPGP--------- 70 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-----EEES-----------SHHHHHHHHHH-HHHTTSEEEEESSSSSST---------
T ss_pred hHHHHHHHHHHHcCCeeeEEE-----EECC-----------CHHHHHHHHHh-hhccCCEEEEcCCcCccc---------
Confidence 477788999999998765432 3322 24556666643 345668889988666542
Q ss_pred CCcchHHHHHHHHHcCC
Q 018295 284 RGGSDLTATTIGKALGL 300 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~A 300 (358)
.|++.-.++.+.+-
T Consensus 71 ---~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 71 ---DDVTPEALAEAGGR 84 (144)
T ss_dssp ---TCHHHHHHHHHSSE
T ss_pred ---CCcccHHHHHhcCc
Confidence 58888888888763
No 89
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=63.53 E-value=31 Score=33.22 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+.-++..|..+|++..... .+ ++ +.+.|.+.+... .++..+.|++|.+|.+.
T Consensus 22 Na~~la~~L~~~G~~v~~~~-----~V--gD---------~~~~I~~~l~~a-~~r~D~vI~tGGLGPT~---------- 74 (255)
T COG1058 22 NAAFLADELTELGVDLARIT-----TV--GD---------NPDRIVEALREA-SERADVVITTGGLGPTH---------- 74 (255)
T ss_pred hHHHHHHHHHhcCceEEEEE-----ec--CC---------CHHHHHHHHHHH-HhCCCEEEECCCcCCCc----------
Confidence 56668899999999876532 11 11 123344444433 34577889999888653
Q ss_pred CcchHHHHHHHHHcCCc
Q 018295 285 GGSDLTATTIGKALGLQ 301 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~ 301 (358)
-|.|+=.+|++||-+
T Consensus 75 --DDiT~e~vAka~g~~ 89 (255)
T COG1058 75 --DDLTAEAVAKALGRP 89 (255)
T ss_pred --cHhHHHHHHHHhCCC
Confidence 499999999999954
No 90
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=56.17 E-value=60 Score=28.99 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+..++..|.+.|+++.... ++.+ +.+.+.+.+... .+...+.|++|-+|.+.
T Consensus 20 n~~~l~~~L~~~G~~v~~~~-----~v~D-----------d~~~I~~~l~~~-~~~~dlVIttGG~G~t~---------- 72 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVT-----VVGD-----------DEDRIAEALRRA-SERADLVITTGGLGPTH---------- 72 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHH-HhCCCEEEECCCCCCCC----------
Confidence 66778889999998865421 2222 123455555432 34567888888666542
Q ss_pred CcchHHHHHHHHHcCCc
Q 018295 285 GGSDLTATTIGKALGLQ 301 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~ 301 (358)
-|.|--.++.+++-+
T Consensus 73 --~D~t~ea~~~~~~~~ 87 (170)
T cd00885 73 --DDLTREAVAKAFGRP 87 (170)
T ss_pred --CChHHHHHHHHhCCC
Confidence 589999999999853
No 91
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=50.71 E-value=91 Score=26.76 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+.++++.|++.|+++..+. ++.+ +.+.+.+.+.+ +.+...+.|++|-.+.+
T Consensus 28 n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~l~~-~~~~~DliIttGG~g~g----------- 79 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLG-----IVPD-----------DPEEIREILRK-AVDEADVVLTTGGTGVG----------- 79 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEe-----ecCC-----------CHHHHHHHHHH-HHhCCCEEEECCCCCCC-----------
Confidence 56678888999998765432 2222 12345555543 33456788888855433
Q ss_pred CcchHHHHHHHHHc
Q 018295 285 GGSDLTATTIGKAL 298 (358)
Q Consensus 285 gGSD~tAa~LA~aL 298 (358)
-.|++...++.+.
T Consensus 80 -~~D~t~~ai~~~g 92 (144)
T TIGR00177 80 -PRDVTPEALEELG 92 (144)
T ss_pred -CCccHHHHHHHhC
Confidence 2599999999876
No 92
>PRK03673 hypothetical protein; Provisional
Probab=48.09 E-value=71 Score=32.68 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+..++..|.+.|++..... .+.+ +.+.+.+.+... ++...+.|++|-+|.+.
T Consensus 22 N~~~la~~L~~~G~~v~~~~-----~v~D-----------~~~~i~~~l~~a-~~~~DlVI~tGGlGpt~---------- 74 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRN-----TVGD-----------NLDALVAILRER-SQHADVLIVNGGLGPTS---------- 74 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----EcCC-----------CHHHHHHHHHHH-hccCCEEEEcCCCCCCC----------
Confidence 67788889999999865431 2222 123455555432 35567889988676542
Q ss_pred CcchHHHHHHHHHcCCc
Q 018295 285 GGSDLTATTIGKALGLQ 301 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~ 301 (358)
-|+|.-.+|.++|-.
T Consensus 75 --dD~t~~avA~a~g~~ 89 (396)
T PRK03673 75 --DDLSALAAATAAGEG 89 (396)
T ss_pred --cccHHHHHHHHcCCC
Confidence 599999999999954
No 93
>PRK01215 competence damage-inducible protein A; Provisional
Probab=47.98 E-value=79 Score=30.41 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+..++..|++.|++..... ++.++ .+.|.+.+... ++...+.|++|-+|.+.
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~-----~v~Dd-----------~~~I~~~l~~a-~~~~DlVIttGG~g~t~--------- 76 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT-----VVMDD-----------IEEIVSAFREA-IDRADVVVSTGGLGPTY--------- 76 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCCC-----------HHHHHHHHHHH-hcCCCEEEEeCCCcCCh---------
Confidence 467778889999999865431 22221 23355555432 34557888888666542
Q ss_pred CCcchHHHHHHHHHcCCc
Q 018295 284 RGGSDLTATTIGKALGLQ 301 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~A~ 301 (358)
-|+|.-.++.++|-+
T Consensus 77 ---dD~t~eaia~~~g~~ 91 (264)
T PRK01215 77 ---DDKTNEGFAKALGVE 91 (264)
T ss_pred ---hhhHHHHHHHHhCCC
Confidence 599999999998843
No 94
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=45.72 E-value=77 Score=28.05 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhch-hcCCceEEEcCCccccCCCCcEEe
Q 018295 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW-ITDLAIPIVTGFLGKAWRTCAITT 281 (358)
Q Consensus 203 ~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~l-l~~~~IpVv~Gfig~~~~~G~~tt 281 (358)
--|+.+++..|++.|+....+ +++.++ .+.+.+.+...+ .+...+.|++|-.+.+.
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~-----~iv~Dd-----------~~~i~~~l~~~~~~~~~DlVIttGGtg~g~------- 77 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADR-----AIVKDD-----------IYQIRAQVSAWIADPDVQVILITGGTGFTG------- 77 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEE-----EEcCCC-----------HHHHHHHHHHHHhcCCCCEEEECCCcCCCC-------
Confidence 346777888899999875543 233321 344555554422 13467889988555442
Q ss_pred eCCCcchHHHHHHHHHcC
Q 018295 282 LGRGGSDLTATTIGKALG 299 (358)
Q Consensus 282 lgRgGSD~tAa~LA~aL~ 299 (358)
-|++.-.++..++
T Consensus 78 -----~D~t~eal~~l~~ 90 (163)
T TIGR02667 78 -----RDVTPEALEPLFD 90 (163)
T ss_pred -----CCCcHHHHHHHHC
Confidence 5777777777754
No 95
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=42.33 E-value=1.2e+02 Score=25.43 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEee
Q 018295 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 203 ~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttl 282 (358)
--|..++++.|++.|....... ++.+ +.+.+.+.+.. +.++..+.|++|-.+.+
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~-----~v~D-----------d~~~I~~~l~~-~~~~~dliittGG~g~g--------- 70 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-----IVPD-----------DKEAIKEALRE-ALERADLVITTGGTGPG--------- 70 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEE-----EeCC-----------CHHHHHHHHHH-HHhCCCEEEEcCCCCCC---------
Confidence 3467778889999998755432 2221 12345555543 23456788888855533
Q ss_pred CCCcchHHHHHHHHHcCC
Q 018295 283 GRGGSDLTATTIGKALGL 300 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~A 300 (358)
-.|++-..++.+++.
T Consensus 71 ---~~D~t~~~l~~~~~~ 85 (135)
T smart00852 71 ---PDDVTPEAVAEALGK 85 (135)
T ss_pred ---CCcCcHHHHHHHhCC
Confidence 158999999988874
No 96
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=40.27 E-value=1.2e+02 Score=26.22 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc--CCceEEEcCCccccCCCCcEEee
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~--~~~IpVv~Gfig~~~~~G~~ttl 282 (358)
|+.+++++|++.|.+.... +++.+ +.+.+.+.+... .+ ...+.|++|-.+.+ .
T Consensus 21 n~~~l~~~l~~~G~~v~~~-----~~v~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~s~g----~---- 75 (152)
T cd00886 21 SGPALVELLEEAGHEVVAY-----EIVPD-----------DKDEIREALIEW-ADEDGVDLILTTGGTGLA----P---- 75 (152)
T ss_pred hHHHHHHHHHHcCCeeeeE-----EEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCcCCC----C----
Confidence 6677888999999875432 13322 134455555432 33 56788888855544 2
Q ss_pred CCCcchHHHHHHHHHcC
Q 018295 283 GRGGSDLTATTIGKALG 299 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~ 299 (358)
-|++...++..++
T Consensus 76 ----~D~t~~al~~~~~ 88 (152)
T cd00886 76 ----RDVTPEATRPLLD 88 (152)
T ss_pred ----CcCcHHHHHHHhC
Confidence 4888888887764
No 97
>PRK00549 competence damage-inducible protein A; Provisional
Probab=39.95 E-value=1.2e+02 Score=31.00 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+..++..|++.|++..... ++.++ .+.|.+.+.. ..++..+.|++|-+|.+.
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~-----~v~Dd-----------~~~I~~~l~~-a~~~~DlVItTGGlGpt~--------- 73 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQT-----VVGDN-----------PERLLSALEI-AEERSDLIITTGGLGPTK--------- 73 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCCC-----------HHHHHHHHHH-hccCCCEEEECCCCCCCC---------
Confidence 367778889999999865431 22221 2334555543 235567889988776542
Q ss_pred CCcchHHHHHHHHHcCCc
Q 018295 284 RGGSDLTATTIGKALGLQ 301 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~A~ 301 (358)
-|+|.-.++.+++.+
T Consensus 74 ---dD~t~ea~a~~~g~~ 88 (414)
T PRK00549 74 ---DDLTKETVAKFLGRE 88 (414)
T ss_pred ---CccHHHHHHHHhCCC
Confidence 588899999988854
No 98
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.88 E-value=1.5e+02 Score=24.97 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+.+++..|++.|.+..... ++.+ +...+.+.+.+. +++..+.|++|-.+.+.
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~i~~~-~~~~DlvittGG~g~g~--------- 72 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAG-----VVPD-----------DADSIRAALIEA-SREADLVLTTGGTGVGR--------- 72 (133)
T ss_pred chHHHHHHHHHHCCCEEEEee-----ecCC-----------CHHHHHHHHHHH-HhcCCEEEECCCCCCCC---------
Confidence 367788888999997754321 2221 134455555443 34467888888555431
Q ss_pred CCcchHHHHHHHHHc
Q 018295 284 RGGSDLTATTIGKAL 298 (358)
Q Consensus 284 RgGSD~tAa~LA~aL 298 (358)
-|++...+....
T Consensus 73 ---~D~t~~ai~~~g 84 (133)
T cd00758 73 ---RDVTPEALAELG 84 (133)
T ss_pred ---CcchHHHHHHhc
Confidence 588888888865
No 99
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=35.68 E-value=73 Score=31.18 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHHh
Q 018295 96 ERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (358)
Q Consensus 96 e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~L 162 (358)
-.+.++.+++.. .+...|||=.++.|.|=+|+...+... .|.+.+-.+.+.+..+.+.+
T Consensus 113 ~~l~~l~~~~~~-~~~D~IVvDt~ptg~tLrlL~lP~~l~-------~~l~~l~~~~~~~~~~~~~~ 171 (305)
T PF02374_consen 113 AALLRLADLLES-GEYDLIVVDTPPTGHTLRLLSLPERLR-------WWLDRLLKLRRKIRSLARPL 171 (305)
T ss_dssp HHHHHHHHHHHH-CSTSEEEEESSSSHHHHHHHHHHHHHH-------HHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCEEEECCCCcHHHHHHHhHHHHHH-------HHHHHHHHHHHhhcchhhhh
Confidence 356667777764 345778999999999999998765442 13343444444444544444
No 100
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=33.98 E-value=1.9e+02 Score=24.55 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCcEEeeCCCcchHH-HHHHHHHcCCceEEEeecCCccccCCCCCCCCCc--ccCCcCHHHHHHHH
Q 018295 276 TCAITTLGRGGSDLT-ATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK--PVPYLTFDEAAELA 338 (358)
Q Consensus 276 ~G~~ttlgRgGSD~t-Aa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak--~i~~Lsy~EA~eLa 338 (358)
.|.+..+-||+-.+. =+..|...||..++|+.|.+++...+..-.+..- +.-.|++++...|.
T Consensus 44 ~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 44 KGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred CCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 467788888875432 2667999999999999998864211111101222 33367888888874
No 101
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=33.68 E-value=37 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHcCCceEEEeecCCc--cccCCCCC
Q 018295 292 TTIGKALGLQEIQVWKDVDG--VLTCDPNI 319 (358)
Q Consensus 292 a~LA~aL~A~~l~i~TDVdG--VytaDP~~ 319 (358)
.+++....+..+.=|+|-+| +|+..|.-
T Consensus 4 l~l~~~a~aa~vYk~~D~~G~v~ysd~P~~ 33 (60)
T PF13511_consen 4 LLLAASAAAAEVYKWVDENGVVHYSDTPPP 33 (60)
T ss_pred HHHhHHHhhccEEEEECCCCCEEECccCCC
Confidence 34444555679999999999 68888764
No 102
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=32.89 E-value=1.6e+02 Score=30.22 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|..++++.|++.|.....+ +++.+ +++.+.+.+... .++..+.|++|-... |+
T Consensus 204 N~~~l~a~l~~~G~e~~~~-----giv~D-----------d~~~l~~~i~~a-~~~~DviItsGG~Sv----G~------ 256 (404)
T COG0303 204 NSYMLAALLERAGGEVVDL-----GIVPD-----------DPEALREAIEKA-LSEADVIITSGGVSV----GD------ 256 (404)
T ss_pred CHHHHHHHHHHcCCceeec-----cccCC-----------CHHHHHHHHHHh-hhcCCEEEEeCCccC----cc------
Confidence 6678889999999875543 24333 234455555443 244678888883322 33
Q ss_pred CcchHHHHHHHHHcCCceEEEee
Q 018295 285 GGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~~l~i~T 307 (358)
.|++-.++...+| ++.||.
T Consensus 257 --~D~v~~~l~~~lG--~v~~~g 275 (404)
T COG0303 257 --ADYVKAALERELG--EVLFHG 275 (404)
T ss_pred --hHhHHHHHHhcCC--cEEEEe
Confidence 6999999998888 788875
No 103
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=32.49 E-value=2.1e+02 Score=29.42 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+..++..|++.|+...... ++.+ + .+.+.+.+... .+...+.|++|-+|.+.
T Consensus 21 N~~~l~~~L~~~G~~v~~~~-----~v~D-d----------~~~i~~~l~~a-~~~~DlVIttGGlgpt~---------- 73 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRT-----TVGD-N----------PERLKTIIRIA-SERADVLIFNGGLGPTS---------- 73 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEE-----EeCC-C----------HHHHHHHHHHH-hcCCCEEEEcCCCCCCC----------
Confidence 66678888999999865431 2222 1 23345555433 35567888888666542
Q ss_pred CcchHHHHHHHHHcCCc
Q 018295 285 GGSDLTATTIGKALGLQ 301 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~ 301 (358)
-|+|.-.++.++|-+
T Consensus 74 --dD~t~eava~~~g~~ 88 (413)
T TIGR00200 74 --DDLTAETIATAKGEP 88 (413)
T ss_pred --cccHHHHHHHHhCCC
Confidence 588888888887743
No 104
>PHA01735 hypothetical protein
Probab=31.08 E-value=1.4e+02 Score=23.24 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHHH--HHHHHHcCCceeEeeccc
Q 018295 193 SRDYLVSFGECMSTRIF--AAYLNKIGVKARQYDAFD 227 (358)
Q Consensus 193 ~~d~Ils~GE~lSa~Ll--a~~L~~~Gi~A~~ld~~d 227 (358)
...+|.+ ||--++.|= ...|++++|.++.++++.
T Consensus 21 l~~Riks-geATtaDL~AA~d~Lk~NdItgv~~~gsp 56 (76)
T PHA01735 21 LLSRIKS-GEATTADLRAACDWLKSNDITGVAVDGSP 56 (76)
T ss_pred HHHHHhc-CcccHHHHHHHHHHHHHCCCceeeCCCCH
Confidence 3334443 555555443 347899999999887765
No 105
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=30.36 E-value=73 Score=31.00 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=25.8
Q ss_pred ccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCcccc
Q 018295 225 AFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273 (358)
Q Consensus 225 ~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~ 273 (358)
..|+.++..+.-...|.+..+.+.+...+. +-.+|||+| +|+.
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~-----~~~~Pvisa-IGHe 117 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIA-----ASPIPVISA-IGHE 117 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHH-----hCCCCEEEe-cCCC
Confidence 345534444332224556666666666653 346999999 8875
No 106
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=27.46 E-value=2.6e+02 Score=23.36 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCcEEeeCCCcc--h-HHHHHHHHHcCCceEEEeecCCccc
Q 018295 276 TCAITTLGRGGS--D-LTATTIGKALGLQEIQVWKDVDGVL 313 (358)
Q Consensus 276 ~G~~ttlgRgGS--D-~tAa~LA~aL~A~~l~i~TDVdGVy 313 (358)
.|.+..+.||+. + .--...|...||..++++.+.+|.+
T Consensus 44 ~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~ 84 (127)
T cd04819 44 EGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVL 84 (127)
T ss_pred CCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcC
Confidence 566776777655 2 2357789999999999999999865
No 107
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=25.95 E-value=5.4e+02 Score=25.42 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHh-HHHHHHHHHHHHHHHcC
Q 018295 146 DELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF-GECMSTRIFAAYLNKIG 217 (358)
Q Consensus 146 ~~l~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~-GE~lSa~Lla~~L~~~G 217 (358)
+..+.|++.++.+-+-+.++...+...|+++..-.-.++ ++-.++..++++++- .+| .+.++...|...|
T Consensus 232 ~~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~L~~A-Lkga~~~~~~~il~nmS~R-~a~~l~eel~~~g 302 (339)
T PRK05686 232 ELAEKIKDLMFVFEDLVDLDDRSIQRLLREVDNDVLALA-LKGASEELREKFLSNMSKR-AAEMLREDLEALG 302 (339)
T ss_pred HHHHHHHHHhcCHHHHhcCCHHHHHHHHHhCCHHHHHHH-HCCCCHHHHHHHHHhcCHH-HHHHHHHHHHHhC
Confidence 445566666666555555666667777776644222222 345678889998654 444 5556666666544
No 108
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=23.85 E-value=4.5e+02 Score=25.84 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHHHh
Q 018295 93 ASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (358)
Q Consensus 93 ~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~L 162 (358)
..+=.+.+|.+.|+.. +-..||+=.||.|.|=+|++.-...- .....+-.|+++.--+.+++
T Consensus 126 deamsfae~~klvk~~-~F~~vVFDTAPTGHTLRlL~fP~~le-------k~lgKl~~l~~k~~pm~sq~ 187 (323)
T KOG2825|consen 126 DEAMSFAEVMKLVKGM-NFDVVVFDTAPTGHTLRLLQFPTTLE-------KGLGKLLSLKNKIGPMLSQM 187 (323)
T ss_pred hHHHhHHHHHHHhhcc-ccceEEeccCCCcceehhhccchHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888765 34668888999999999997643221 12334445566655555544
No 109
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=23.79 E-value=3.7e+02 Score=27.53 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|..++++.|++.|+.+..+ +++.++ .+.+.+.+.+. .++..+.|++|-.+.+ .
T Consensus 204 sn~~~l~a~l~~~G~~~~~~-----~~v~Dd-----------~~~i~~~l~~a-~~~~DlvIttGG~S~G----~----- 257 (411)
T PRK10680 204 TNRLAVHLMLEQLGCEVINL-----GIIRDD-----------PHALRAAFIEA-DSQADVVISSGGVSVG----E----- 257 (411)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCCC-----------HHHHHHHHHHh-ccCCCEEEEcCCCCCC----C-----
Confidence 36777899999999876543 233221 33455555432 3455788888844432 2
Q ss_pred CCcchHHHHHHHHHcCCceEEEee
Q 018295 284 RGGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~A~~l~i~T 307 (358)
-|++.-.+.. +| ++.||.
T Consensus 258 ---~D~~~~al~~-lG--~~~f~~ 275 (411)
T PRK10680 258 ---ADYTKTILEE-LG--EIAFWK 275 (411)
T ss_pred ---cchHHHHHHh-cC--cEEEEE
Confidence 5999888865 46 676665
No 110
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=23.29 E-value=2.5e+02 Score=23.89 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=37.6
Q ss_pred CcEEeeCCCcch-HHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHC
Q 018295 277 CAITTLGRGGSD-LTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (358)
Q Consensus 277 G~~ttlgRgGSD-~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~ 340 (358)
|.+....||+.. ..-...|...||..++++.|.+|...-.+.. ...-+.-.|++++..+|...
T Consensus 48 GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~-~~~iP~v~Is~~dG~~L~~~ 111 (143)
T cd02133 48 GKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE-AVFIPVVFISKEDGEALKAA 111 (143)
T ss_pred ceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC-CCeEeEEEecHHHHHHHHHH
Confidence 444444555432 2345567778999999999988743222111 11234456788888888653
No 111
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=23.05 E-value=3.6e+02 Score=22.22 Aligned_cols=63 Identities=29% Similarity=0.313 Sum_probs=36.4
Q ss_pred CCcEEeeCCCcchHH-HHHHHHHcCCceEEEeecCCcccc----CCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 276 TCAITTLGRGGSDLT-ATTIGKALGLQEIQVWKDVDGVLT----CDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 276 ~G~~ttlgRgGSD~t-Aa~LA~aL~A~~l~i~TDVdGVyt----aDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
.|.+..+.||+.++. -...|..-||..++++.|.++... .+|. .+..-+.-.|++++..+|..
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~-~~~~iP~~~Is~~~G~~l~~ 110 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPN-IDLKVPVGVITKAAGAALRR 110 (122)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCC-CCCeeeEEEEcHHHHHHHHH
Confidence 355666666654432 234588889999999998875211 1111 01112333678888777743
No 112
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=22.66 E-value=3.7e+02 Score=26.60 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+.++...|++.|..+..+ .++.+ +.+.+.+.+...+.+...+.|++|-.+.+.
T Consensus 175 sn~~~L~~~L~~~G~~v~~~-----~iVpD-----------D~~~I~~al~~a~~~~~DlIITTGGtg~g~--------- 229 (312)
T PRK03604 175 RSGKLIVEGLEEAGFEVSHY-----TIIPD-----------EPAEIAAAVAAWIAEGYALIITTGGTGLGP--------- 229 (312)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEcCC-----------CHHHHHHHHHHhhhCCCCEEEECCCCCCCC---------
Confidence 46777888899999876543 13322 134466655443224457888888665442
Q ss_pred CCcchHHHHHHHHHc
Q 018295 284 RGGSDLTATTIGKAL 298 (358)
Q Consensus 284 RgGSD~tAa~LA~aL 298 (358)
.|++--.++...
T Consensus 230 ---~D~tpeAl~~lg 241 (312)
T PRK03604 230 ---RDVTPEALAPLL 241 (312)
T ss_pred ---CccHHHHHHHhc
Confidence 588888888765
No 113
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=21.75 E-value=2.9e+02 Score=22.49 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=36.6
Q ss_pred CcEEeeCCCcc-h-HHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 277 CAITTLGRGGS-D-LTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 277 G~~ttlgRgGS-D-~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
|.+....||+. . ......+...||..++++.+.++....... +..-+.-.|++++...|..
T Consensus 52 GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~~--~~~iP~v~I~~~~g~~l~~ 114 (126)
T cd02120 52 GKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVAD--AHVLPAVHVDYEDGTAILS 114 (126)
T ss_pred ccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceeccc--ccccceEEECHHHHHHHHH
Confidence 44444455443 3 244666788999999999988765433221 1234445567777776644
No 114
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=21.10 E-value=4.5e+02 Score=22.82 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=43.9
Q ss_pred cccCCCCcEEeeCCCcc------hHHHHHHHHHcCCceEEEeecC--CccccCCCCCCC--CCcccC--CcCHHHHHHHH
Q 018295 271 GKAWRTCAITTLGRGGS------DLTATTIGKALGLQEIQVWKDV--DGVLTCDPNIHP--HAKPVP--YLTFDEAAELA 338 (358)
Q Consensus 271 g~~~~~G~~ttlgRgGS------D~tAa~LA~aL~A~~l~i~TDV--dGVytaDP~~v~--~Ak~i~--~Lsy~EA~eLa 338 (358)
+.+ -.|.+..+.||+- -.--...|..-||..++|+.|. +|.+. |.+.. +...|| .|++++..+|.
T Consensus 52 ~~d-~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~--~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 52 CGG-MAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQN--PFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred CCC-cCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCccc--ccccCCCCCceEeEEEeeHHHHHHHH
Confidence 444 3688888999864 2344677999999999999999 88542 11111 123455 56777777775
Q ss_pred H
Q 018295 339 Y 339 (358)
Q Consensus 339 ~ 339 (358)
.
T Consensus 129 ~ 129 (139)
T cd04817 129 A 129 (139)
T ss_pred H
Confidence 4
No 115
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=21.03 E-value=2.6e+02 Score=21.54 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCceEEEeecCCccc--cCCCCCCCCCcccCCcCHHHHHHHHH
Q 018295 289 LTATTIGKALGLQEIQVWKDVDGVL--TCDPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 289 ~tAa~LA~aL~A~~l~i~TDVdGVy--taDP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
..-...|...||..++|+.+-+... ...+...+..-+.-.|++++..+|..
T Consensus 47 ~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 47 DDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp HHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 4566788899999999999111111 11111112234445667888887754
No 116
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=20.01 E-value=4.1e+02 Score=21.79 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=38.3
Q ss_pred CCcEEeeCCCcchH-HHHHHHHHcCCceEEEeecC-CccccC-CCCCCCCCcccCCcCHHHHHHHHH
Q 018295 276 TCAITTLGRGGSDL-TATTIGKALGLQEIQVWKDV-DGVLTC-DPNIHPHAKPVPYLTFDEAAELAY 339 (358)
Q Consensus 276 ~G~~ttlgRgGSD~-tAa~LA~aL~A~~l~i~TDV-dGVyta-DP~~v~~Ak~i~~Lsy~EA~eLa~ 339 (358)
.|.+..+.||+-.+ .-...|...||..++++.|. +|.+.. .+......-+.-.|+.++..+|..
T Consensus 44 ~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 44 AGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46666667765433 35677889999999999888 664321 111011122333577777777643
Done!