Query 018295
Match_columns 358
No_of_seqs 215 out of 1815
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 1.1E-60 3.6E-65 490.6 29.9 296 60-357 7-303 (510)
2 3c1m_A Probable aspartokinase; 100.0 2.6E-55 8.9E-60 447.5 30.4 270 81-357 1-280 (473)
3 2j0w_A Lysine-sensitive aspart 100.0 9.4E-55 3.2E-59 440.8 25.3 266 80-357 2-271 (449)
4 3tvi_A Aspartokinase; structur 100.0 3.6E-54 1.2E-58 435.8 22.2 250 80-357 2-258 (446)
5 3l76_A Aspartokinase; alloster 100.0 1.1E-44 3.8E-49 378.6 20.1 221 80-357 1-225 (600)
6 3ab4_A Aspartokinase; aspartat 100.0 1E-43 3.5E-48 357.1 21.9 221 80-357 1-224 (421)
7 1gs5_A Acetylglutamate kinase; 100.0 1.3E-27 4.6E-32 224.8 17.9 213 81-356 3-228 (258)
8 2j4j_A Uridylate kinase; trans 100.0 1.1E-27 3.8E-32 221.0 16.5 185 81-357 1-196 (226)
9 2ap9_A NAG kinase, acetylgluta 99.9 3.1E-27 1.1E-31 227.2 15.6 209 80-348 25-248 (299)
10 2a1f_A Uridylate kinase; PYRH, 99.9 1.3E-26 4.5E-31 216.9 19.0 197 79-357 7-211 (247)
11 1ybd_A Uridylate kinase; alpha 99.9 1.7E-26 5.8E-31 214.5 17.3 196 80-357 7-210 (239)
12 2jjx_A Uridylate kinase, UMP k 99.9 1.3E-25 4.4E-30 211.3 20.5 197 78-357 10-217 (255)
13 4a7w_A Uridylate kinase; trans 99.9 1.8E-25 6.2E-30 208.9 20.4 196 80-357 7-211 (240)
14 1z9d_A Uridylate kinase, UK, U 99.9 7E-25 2.4E-29 205.8 19.3 197 79-357 6-211 (252)
15 2ij9_A Uridylate kinase; struc 99.9 5.2E-25 1.8E-29 202.1 16.8 184 81-356 1-191 (219)
16 2brx_A Uridylate kinase; UMP k 99.9 4.2E-25 1.5E-29 206.6 16.1 187 80-357 19-215 (244)
17 3ek6_A Uridylate kinase; UMPK 99.9 1.5E-24 5E-29 203.2 16.9 197 79-357 8-212 (243)
18 3nwy_A Uridylate kinase; allos 99.9 2.8E-24 9.6E-29 205.4 15.8 198 78-357 48-252 (281)
19 2ogx_A Molybdenum storage prot 99.9 3.7E-24 1.3E-28 203.9 13.5 194 82-356 41-239 (276)
20 2va1_A Uridylate kinase; UMPK, 99.9 4.5E-23 1.5E-27 194.1 19.9 196 80-357 24-227 (256)
21 2bty_A Acetylglutamate kinase; 99.9 5.3E-24 1.8E-28 202.8 12.7 213 80-356 21-247 (282)
22 2rd5_A Acetylglutamate kinase- 99.9 7.4E-24 2.5E-28 203.6 12.5 209 80-348 36-256 (298)
23 2ogx_B Molybdenum storage prot 99.9 7E-23 2.4E-27 194.3 18.6 194 82-357 38-238 (270)
24 2egx_A Putative acetylglutamat 99.9 5.9E-23 2E-27 194.6 17.1 216 82-355 1-240 (269)
25 3ll9_A Isopentenyl phosphate k 99.9 2.7E-23 9.1E-28 197.3 14.3 121 203-338 89-211 (269)
26 2j5v_A Glutamate 5-kinase; pro 99.9 5.3E-23 1.8E-27 203.4 15.5 206 80-356 4-227 (367)
27 2v5h_A Acetylglutamate kinase; 99.9 7.1E-23 2.4E-27 199.0 12.9 209 80-348 49-268 (321)
28 3d40_A FOMA protein; fosfomyci 99.9 5.7E-23 1.9E-27 196.6 11.4 201 81-355 24-245 (286)
29 2ako_A Glutamate 5-kinase; str 99.9 1.5E-22 5E-27 189.5 12.4 204 81-356 2-220 (251)
30 2buf_A Acetylglutamate kinase; 99.9 1E-21 3.4E-26 189.0 15.7 206 80-348 26-254 (300)
31 3ll5_A Gamma-glutamyl kinase r 99.9 6.6E-21 2.3E-25 178.8 16.3 179 80-330 3-190 (249)
32 1e19_A Carbamate kinase-like c 99.8 4.4E-21 1.5E-25 185.8 13.0 206 81-348 3-277 (314)
33 3l86_A Acetylglutamate kinase; 99.8 2.2E-21 7.6E-26 185.2 9.4 117 208-341 118-240 (279)
34 3zzh_A Acetylglutamate kinase; 99.8 1.7E-20 5.9E-25 181.2 10.2 194 79-340 47-250 (307)
35 4ab7_A Protein Arg5,6, mitocho 99.8 2.5E-19 8.6E-24 181.5 12.3 193 80-340 48-250 (464)
36 2e9y_A Carbamate kinase; trans 99.8 3.7E-19 1.3E-23 172.4 12.7 199 80-341 4-268 (316)
37 3d2m_A Putative acetylglutamat 99.8 4.8E-19 1.6E-23 178.7 13.0 204 80-348 43-261 (456)
38 3k4o_A Isopentenyl phosphate k 99.8 7.6E-19 2.6E-23 166.5 12.3 112 203-338 98-209 (266)
39 3s6g_A N-acetylglutamate kinas 99.8 1.6E-18 5.4E-23 175.8 12.5 196 79-340 57-259 (460)
40 2we5_A Carbamate kinase 1; arg 99.8 6.9E-18 2.4E-22 162.9 15.8 80 257-341 178-261 (310)
41 3s6k_A Acetylglutamate kinase; 99.7 4.4E-18 1.5E-22 172.7 0.5 196 79-340 60-262 (467)
42 4axs_A Carbamate kinase; oxido 99.5 5E-14 1.7E-18 137.3 11.2 81 256-341 198-284 (332)
43 3kzf_A Carbamate kinase; argin 99.4 5.9E-12 2E-16 121.6 13.5 84 255-340 182-268 (317)
44 3kbq_A Protein TA0487; structu 68.1 18 0.00061 31.4 7.9 74 204-307 23-96 (172)
45 1mkz_A Molybdenum cofactor bio 57.8 24 0.00083 30.1 6.8 68 204-299 28-96 (172)
46 1y5e_A Molybdenum cofactor bio 50.2 41 0.0014 28.5 7.0 67 204-299 31-99 (169)
47 2fts_A Gephyrin; gephyrin, neu 49.9 48 0.0016 32.5 8.3 73 205-307 209-281 (419)
48 2is8_A Molybdopterin biosynthe 49.8 30 0.001 29.2 6.0 67 205-299 22-89 (164)
49 2pjk_A 178AA long hypothetical 45.3 51 0.0018 28.3 6.9 66 205-299 41-108 (178)
50 3rfq_A Pterin-4-alpha-carbinol 43.4 49 0.0017 28.8 6.5 68 204-299 49-116 (185)
51 2g2c_A Putative molybdenum cof 41.1 41 0.0014 28.4 5.5 66 205-298 26-95 (167)
52 3iwt_A 178AA long hypothetical 39.4 70 0.0024 27.0 6.8 67 205-299 41-108 (178)
53 3pzy_A MOG; ssgcid, seattle st 39.3 50 0.0017 28.0 5.8 66 205-299 28-93 (164)
54 1g8l_A Molybdopterin biosynthe 35.2 1.3E+02 0.0045 29.3 8.8 71 205-307 205-275 (411)
55 2pbq_A Molybdenum cofactor bio 35.0 1E+02 0.0036 26.1 7.2 66 205-299 26-95 (178)
56 1uuy_A CNX1, molybdopterin bio 33.7 1.2E+02 0.0041 25.3 7.3 42 246-299 56-98 (167)
57 1uz5_A MOEA protein, 402AA lon 33.2 1.3E+02 0.0044 29.2 8.4 70 205-306 208-277 (402)
58 1di6_A MOGA, molybdenum cofact 32.7 1.4E+02 0.0047 26.0 7.7 69 205-299 24-93 (195)
59 1jlj_A Gephyrin; globular alph 32.6 1.3E+02 0.0044 26.0 7.5 66 205-298 35-104 (189)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=1.1e-60 Score=490.62 Aligned_cols=296 Identities=76% Similarity=1.110 Sum_probs=254.6
Q ss_pred chhhhccccccccccCcCCCCceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCC
Q 018295 60 RIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGV 139 (358)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~ 139 (358)
..+++++++.|+ .+..+.++.|+|+|||||||+|+++|++|+++|.+..++++|||||||||+||.|+++++.+..++.
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~ 85 (510)
T 2cdq_A 7 VRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGV 85 (510)
T ss_dssp -------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTCT
T ss_pred HHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhccc
Confidence 456787765554 4445677899999999999999999999999997655578899999999999999999887655433
Q ss_pred CccchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCc
Q 018295 140 TNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVK 219 (358)
Q Consensus 140 ~~~~~~~~l~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~ 219 (358)
...++.+.++.|+++|.+++++|+.+.+.|+..+++|++++.++....+++++.+|+++|+||++|+.+++.+|+++|++
T Consensus 86 ~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~ 165 (510)
T 2cdq_A 86 SNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVK 165 (510)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34456678999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCC-CCcEEeeCCCcchHHHHHHHHHc
Q 018295 220 ARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKAL 298 (358)
Q Consensus 220 A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~-~G~~ttlgRgGSD~tAa~LA~aL 298 (358)
|+++++.+++++++++++++++.+.++.++.+.+...+++.+.|||++||+|.+ + +|.++|+||||||++|+++|.+|
T Consensus 166 A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~l 244 (510)
T 2cdq_A 166 ARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKAL 244 (510)
T ss_dssp EEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHHH
T ss_pred EEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHHc
Confidence 999999999899999998888776666666666665455788999999999998 6 89999999999999999999999
Q ss_pred CCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 299 GLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 299 ~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+|+.+++||||||||++||+++|+|++|++|||+|+.||+++|++|+||+|++++.+.+
T Consensus 245 ~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~g 303 (510)
T 2cdq_A 245 GLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGE 303 (510)
T ss_dssp TCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999998754
No 2
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=2.6e-55 Score=447.52 Aligned_cols=270 Identities=38% Similarity=0.608 Sum_probs=244.0
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC-CCC-CcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSF-PNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~-~~~-~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
||+|+|||||||+|+++|++|+++|.+. .+. ++|||||||||+||.|+++++.+... ....++.+.++.|+++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~i~~va~ii~~~~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 79 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDV-RDIAKVGDFIKFIREKHYKA 79 (473)
T ss_dssp -CEEEEECTTTTSSHHHHHHHHHHHHHHHTTCSCEEEEECCSTTHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhhcCCCCEEEEEcCChhhHHHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999753 345 78999999999999999998776431 11235777899999999999
Q ss_pred HHHhCCCH---H----HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 159 VDELGIDR---S----IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 159 ~~~L~~~~---~----~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
+++|..+. + .|+..+++|++++.++..+++++++.+|+++++||++|+.+++.+|+++|++|+++++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~ 159 (473)
T 3c1m_A 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGII 159 (473)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEE
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEE
Confidence 99998773 3 6888999999999999999999999999999999999999999999999999999999999899
Q ss_pred eeCCCCCcee-eccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
++++++++++ .+.+++.+... ++++.|||++||+|.+ ++|.++|+||||+|++|+++|.+|+|+.+++|||||
T Consensus 160 t~~~~~~~~~~~~~~~~~i~~l-----l~~g~ipVv~G~~g~~-~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 160 TDNNFGSARVKRLEVKERLLPL-----LKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp ECSCTTSCCEEEECHHHHHHHH-----HHTTCEEEEESSEEEE-TTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EccCCCCccccHhhhHHHHHHH-----HhCCcEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 9999998888 57766666653 3678999999999998 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|++++++++||+|+.+|+++|++++||+++.++.+.+
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~~~g 280 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKG 280 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHHT
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998754
No 3
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=9.4e-55 Score=440.79 Aligned_cols=266 Identities=32% Similarity=0.441 Sum_probs=227.3
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
|.|+|+|||||||+|++++++|+++|.... +++|||||||||+||.|+++++.+. ..++.+.++.++++|.+++
T Consensus 2 m~~~V~KFGGTSv~~~e~i~~va~ii~~~~-~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i~ 75 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADFDAMNRSADIVLSDA-NVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAIL 75 (449)
T ss_dssp -CCEEEEECSGGGSSHHHHHHHHHHHTSCT-TEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCCHHHHHHHHHHHHhcC-CCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999997643 4789999999999999999876431 1235556889999999999
Q ss_pred HHhCCCHH---HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCC
Q 018295 160 DELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (358)
Q Consensus 160 ~~L~~~~~---~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (358)
++|..+.. .++..+++| +.+.++..+.+ +++.+|+++++||++|+.+++.+|+++|++++++++.++ ++|++++
T Consensus 76 ~~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~ 152 (449)
T 2j0w_A 76 ERLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRF 152 (449)
T ss_dssp TTSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCT
T ss_pred HHhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCC
Confidence 99987653 477778888 55677766655 489999999999999999999999999999999999998 8888888
Q ss_pred CCceeeccch-HHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccC
Q 018295 237 TNADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (358)
Q Consensus 237 ~~a~i~~~~~-~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyta 315 (358)
+++++..... ++....+ ..+++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+.+++||||||||++
T Consensus 153 ~~~~~~~~~~~~~~~~~l-~~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 229 (449)
T 2j0w_A 153 GRAEPDIAALAELAALQL-LPRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTT 229 (449)
T ss_dssp TSCCBCHHHHHHHHHHHT-HHHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESS
T ss_pred CCccccHhHhHHHHHHHH-HHHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcC
Confidence 8877643221 1222222 223333 499999999998 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 316 DP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||+++|++++|+++||+|+.+|+++|+|||||+|++++.+.+
T Consensus 230 DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~g 271 (449)
T 2j0w_A 230 DPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSD 271 (449)
T ss_dssp CTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHT
T ss_pred CCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCC
Confidence 999999999999999999999999999999999999998754
No 4
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=3.6e-54 Score=435.78 Aligned_cols=250 Identities=31% Similarity=0.443 Sum_probs=206.5
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------CchHHHHHhHHHHhcCCCccchHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~~~~~vVVVSA~gg-------~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (358)
.+|+|+|||||||+|+++|++|+++|.+. +.++||||||||+ +||.|+++++.+... .++.+.++.|+
T Consensus 2 ~~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~ 76 (446)
T 3tvi_A 2 LKIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLIS 76 (446)
T ss_dssp --CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHH
T ss_pred CccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHH
Confidence 37999999999999999999999999874 4678999999995 999999998877543 34678899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEe
Q 018295 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (358)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit 232 (358)
++|.+++++|+.+.+. +++++++++.+. ..+.+|+|+|+||+||+.||+.+| ++.+++++++++++
T Consensus 77 ~~~~~i~~~L~~~~~~----~~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~ 142 (446)
T 3tvi_A 77 QRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFD 142 (446)
T ss_dssp HHHHHHHHHHTCCSCH----HHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBC
T ss_pred HHHHHHHHHhcccHHH----HHHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeC
Confidence 9999999999877543 233333343321 127789999999999999999996 58899999985544
Q ss_pred eCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
+ +++.+++.+++.+.+. ++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++|||||||
T Consensus 143 ~---~~~~~~~~~~~~l~~~-----l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGv 213 (446)
T 3tvi_A 143 K---SGCFDEKKSYEKIKEK-----VLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGF 213 (446)
T ss_dssp C-----CBCHHHHHHHHHHH-----TTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred C---CCceehHhhHHHHHHH-----HhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 3 4445545444444432 4678999999999998 58999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||+||+++|+|++|++|||+|+.||+++|++|+||+|++++.+.+
T Consensus 214 yt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ 258 (446)
T 3tvi_A 214 LMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSG 258 (446)
T ss_dssp BSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSS
T ss_pred CCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999875
No 5
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=1.1e-44 Score=378.56 Aligned_cols=221 Identities=33% Similarity=0.468 Sum_probs=186.0
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
|+++|+|||||||++++++++++++|... .+.++|||+||||++||.|++.+..
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~------------------------ 56 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQ------------------------ 56 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHH------------------------
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHh------------------------
Confidence 46899999999999999999999999764 2457889999999999999875321
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
+. ...+++.+|+++++||++|+.+++.+|+++|++++++++.++++++++.++
T Consensus 57 ----~~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~ 109 (600)
T 3l76_A 57 ----IS-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109 (600)
T ss_dssp ----HC-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC----
T ss_pred ----hc-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC
Confidence 10 123467789999999999999999999999999999999999899888887
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCC--cEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccC
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G--~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyta 315 (358)
++++...+++.+... ++.+.|||++||+|.+ ++| ++++|||||||++|+++|.+|+|+++++||||||||++
T Consensus 110 ~~~~~~~~~~~i~~l-----l~~g~IpVv~Gf~g~~-~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 183 (600)
T 3l76_A 110 RARILEIRPDRLEHH-----LREGKVVVVAGFQGIS-SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183 (600)
T ss_dssp ---CCEEEECCHHHH-----HTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSS
T ss_pred CceeccccHHHHHHH-----HhCCCEEEEECCeecC-CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCC
Confidence 777765555545543 3678999999999998 589 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 316 DP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||+++|+|+++++|||+|+.+|+++|++++||+|++++.+.+
T Consensus 184 dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~g 225 (600)
T 3l76_A 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYG 225 (600)
T ss_dssp CTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHT
T ss_pred CCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999998865
No 6
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=1e-43 Score=357.10 Aligned_cols=221 Identities=37% Similarity=0.539 Sum_probs=164.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
|.++|+|||||||.+++++++++++|... .+.++|||+||+|+.||.|++.....
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~----------------------- 57 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV----------------------- 57 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh-----------------------
Confidence 46799999999999999999999999763 34577899999999999998753210
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
....+++.+|.+++.||.+|+.+++.+|+++|+++.++++.++++++++.++
T Consensus 58 ----------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~ 109 (421)
T 3ab4_A 58 ----------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG 109 (421)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC
Confidence 0123568889999999999999999999999999999999998888888887
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCC-CcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCC
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~-G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaD 316 (358)
++++...+.+.+... ++++.|||++||+|.+ ++ |+++|+||||||++|+.+|.+|+|++++|||||||||++|
T Consensus 110 ~~~v~~~~~~~i~~~-----l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 183 (421)
T 3ab4_A 110 NARIVDVTPGRVREA-----LDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 (421)
T ss_dssp ------CCHHHHHHH-----HHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSC
T ss_pred CeeechhhHHHHHHH-----HhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCC
Confidence 777766666655543 3678999999999998 58 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 317 P~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|+++|++++|++|||+|+.+|+++|++++||+|+.++.+.+
T Consensus 184 Pr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~g 224 (421)
T 3ab4_A 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFN 224 (421)
T ss_dssp TTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTT
T ss_pred CCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998764
No 7
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.95 E-value=1.3e-27 Score=224.81 Aligned_cols=213 Identities=16% Similarity=0.257 Sum_probs=160.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
.|+|+||||+++.+++.++++++.|... ...+++||||++|+.||.|++...... ..
T Consensus 3 ~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~-------~~-------------- 61 (258)
T 1gs5_A 3 NPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPV-------KK-------------- 61 (258)
T ss_dssp CCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCC-------CE--------------
T ss_pred ccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCc-------ce--------------
Confidence 4699999999999999999999999653 235679999999999999987432100 00
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
..+ ++ ..+....+.+ ..+++.+|+.|++ .|+++|++++++++.+.+++++...+
T Consensus 62 --~~g-------------------lr---~t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~~ 116 (258)
T 1gs5_A 62 --KNG-------------------LR---VTPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQLD 116 (258)
T ss_dssp --ETT-------------------EE---CBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEECC
T ss_pred --eCC-------------------Ee---eCCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEcC
Confidence 000 00 0111111111 2457789999887 57999999999999998788775322
Q ss_pred ----C-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 238 ----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 238 ----~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
. +++...+.+.+... ++++.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++|||||||
T Consensus 117 ~d~~~~g~~~~~~~~~i~~l-----l~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~Gv 185 (258)
T 1gs5_A 117 EELGHVGLAQPGSPKLINSL-----LENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSGI 185 (258)
T ss_dssp GGGBSBEEEEECCCHHHHHH-----HHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSSC
T ss_pred CCCCCcCceeEECHHHHHHH-----HHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCce
Confidence 1 23334445555443 478899999997 777 589999997 999999999999999 9999999999
Q ss_pred ccCCCCCCCCCcccCCcCHHHHHHHHHCCC-----CcccHhhHHHHHhc
Q 018295 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVYIFEAVNVIELC 356 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~EA~eLa~~Ga-----kVLHP~ai~~a~~~ 356 (358)
|++| ++++++|||+|+.+++..|. ++.|+.+++++++.
T Consensus 186 ~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~ 228 (258)
T 1gs5_A 186 LDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTL 228 (258)
T ss_dssp BCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHH
T ss_pred ECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 9986 57899999999999987755 89999999998753
No 8
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.95 E-value=1.1e-27 Score=221.04 Aligned_cols=185 Identities=17% Similarity=0.205 Sum_probs=141.0
Q ss_pred ceEEEEeCccccC--CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (358)
Q Consensus 81 ~~~V~KFGGSSl~--s~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (358)
+++|+||||+++. +.+.++++++.|.... +.++|+|+|| |.+++.+++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~--------------------------- 52 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIK--------------------------- 52 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHH---------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHH---------------------------
Confidence 4789999999999 8999999999997642 3344555544 555554432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCC
Q 018295 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (358)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (358)
++++++.+ +...|.+.++|+.+|+.|++.+|+++|+++ +
T Consensus 53 -~~~~~g~~-------------------------~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 53 -LAREIGIG-------------------------EAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp -HHHHTTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred -HHHHhCCC-------------------------cccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 23344433 245677788999999999999999999865 1
Q ss_pred CCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCC
Q 018295 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (358)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaD 316 (358)
..+.+.+.. +++.+.|||++| + . . .+.+|++|+.+|.+|+|++++|||||||||++|
T Consensus 92 ------~~~~~~i~~-----ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFIQ-----DWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHHH-----HHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHHH-----HHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 112333433 247889999999 3 2 1 244999999999999999999999999999999
Q ss_pred CCCCCCCcccCCcCHHHHHHHHHC-CCC------cccHhhHHHHHhcc
Q 018295 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VYIFEAVNVIELCK 357 (358)
Q Consensus 317 P~~v~~Ak~i~~Lsy~EA~eLa~~-Gak------VLHP~ai~~a~~~~ 357 (358)
|+++|+++++++|||+|+.+++.. |++ +.||+++.++.+.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~g 196 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSK 196 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTT
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCC
Confidence 999999999999999999999654 777 99999999998754
No 9
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.95 E-value=3.1e-27 Score=227.18 Aligned_cols=209 Identities=20% Similarity=0.258 Sum_probs=158.0
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
+.++|+||||+++.+++.++++++.|.... .+..+|||+++|..++.+++..
T Consensus 25 ~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~--------------------------- 77 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRL--------------------------- 77 (299)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHH---------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHc---------------------------
Confidence 367999999999999989989998887542 3445666777888877776531
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCC
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I--ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~ 236 (358)
+.++. +.+++ +..++..++.+ ++.|+ ++.. ++..|++.|++++++++.+.+++++..+
T Consensus 78 ----~~~~~-----------~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~ 137 (299)
T 2ap9_A 78 ----GIEGD-----------FKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRR 137 (299)
T ss_dssp ----TCCCC-----------CSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEEC
T ss_pred ----CCccc-----------ccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEec
Confidence 11110 00111 12344555554 44677 5666 6888999999999999999777776533
Q ss_pred C------------CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEE
Q 018295 237 T------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (358)
Q Consensus 237 ~------------~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~ 304 (358)
+ .+++...+.+.+.. +++.+.|||++|| +.+ +.|+.++++ +|++|+.+|.+|+|++++
T Consensus 138 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~li 207 (299)
T 2ap9_A 138 SVTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLL 207 (299)
T ss_dssp CBCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 2 12333344444444 3478899999996 777 589999997 999999999999999999
Q ss_pred EeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHh
Q 018295 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFE 348 (358)
Q Consensus 305 i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ 348 (358)
|||||||||++||+ ++++|++||++|+.+++++|...+||+
T Consensus 208 ilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~K 248 (299)
T 2ap9_A 208 MLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPK 248 (299)
T ss_dssp EEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHH
T ss_pred EEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHH
Confidence 99999999999998 689999999999999999999999997
No 10
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.95 E-value=1.3e-26 Score=216.87 Aligned_cols=197 Identities=20% Similarity=0.207 Sum_probs=140.6
Q ss_pred CCceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
.+.++|+||||+++. +.+.++++++.|.... .+..+|+|++.|.+.+...
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~---------------------- 64 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK---------------------- 64 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHH----------------------
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchh----------------------
Confidence 357899999999999 5689999999987642 3344555554455533221
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
++.++.+. +..|.+.++|+++|+.++..+|++.|+++.++++.+.+.
T Consensus 65 --------~~~~g~~~-------------------------~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~ 111 (247)
T 2a1f_A 65 --------LAKAGMNR-------------------------VVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG 111 (247)
T ss_dssp --------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred --------HHHcCCCC-------------------------CcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccc
Confidence 12333332 234566789999999999999999999999998877521
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+. +. .....+ ..+++.+.|||++|+.+ . .++++|++|+.+|.+|+|++++||||||
T Consensus 112 ~~-------~~--~~~~~~-----~~ll~~g~ipVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~liilTDVd 167 (247)
T 2a1f_A 112 IC-------DT--YNWSEA-----IKMLREKRVVIFSAGTG------N----PFFTTDSTACLRGIEIEADVVLKATKVD 167 (247)
T ss_dssp TS-------EE--CCHHHH-----HHHHHTTCEEEEESTTS------C----SSCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred cc-------ch--hhHHHH-----HHHHhCCCEEEEeCCcC------C----CCCCcHHHHHHHHHhCCCCEEEEEeCCC
Confidence 11 10 011222 12357889999998432 2 1345999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|++++|++|+|+|+.++ |++++||+++.+|.+.+
T Consensus 168 Gvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~g 211 (247)
T 2a1f_A 168 GVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHG 211 (247)
T ss_dssp SCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHT
T ss_pred cccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcC
Confidence 999999999999999999999999874 89999999999998654
No 11
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.94 E-value=1.7e-26 Score=214.49 Aligned_cols=196 Identities=21% Similarity=0.264 Sum_probs=145.3
Q ss_pred CceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 80 ~~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
+.++|+||||+++. +.+.++++++.|.... .+..+|+|++.|...+..
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~------------------------ 62 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGV------------------------ 62 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHH------------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhch------------------------
Confidence 56899999999998 4688999999987642 233455554434221110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEE
Q 018295 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (358)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~ii 231 (358)
. ++.++.+. +..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.+
T Consensus 63 ----~--~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~ 111 (239)
T 1ybd_A 63 ----S--AQAGSMDR-------------------------ATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQI 111 (239)
T ss_dssp ----H--HHHTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSS
T ss_pred ----h--HHHcCCCC-------------------------ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccc
Confidence 0 22344332 2334567789999999999999999999999988765322
Q ss_pred eeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCc
Q 018295 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (358)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdG 311 (358)
.. ++ . .. ... .+++.+.|||++|+.|. ..+.+|++|+.+|.+|+|++++|||||||
T Consensus 112 ~~-~~-------~-~~----~~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVdG 167 (239)
T 1ybd_A 112 AE-TY-------A-RP----KAI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVDG 167 (239)
T ss_dssp CE-EC-------C-HH----HHH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred cc-ch-------h-HH----HHH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCCc
Confidence 11 11 0 11 112 23578899999986542 12459999999999999999999999999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||++||+++|++++|++|+|+|+.++ |++++||+++.++.+.+
T Consensus 168 vy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~g 210 (239)
T 1ybd_A 168 VYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERK 210 (239)
T ss_dssp CBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTT
T ss_pred cCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcC
Confidence 99999999999999999999998874 89999999999998754
No 12
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.94 E-value=1.3e-25 Score=211.35 Aligned_cols=197 Identities=22% Similarity=0.288 Sum_probs=142.9
Q ss_pred CCCceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHH
Q 018295 78 EKQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (358)
Q Consensus 78 ~~~~~~V~KFGGSSl~s-------~e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l 148 (358)
....++|+||||+++.+ .+.++++++.|.... +.++|||+|+ |...+.+.
T Consensus 10 ~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~-------------------- 68 (255)
T 2jjx_A 10 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL-------------------- 68 (255)
T ss_dssp CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH--------------------
T ss_pred ccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH--------------------
Confidence 34578999999999995 789999999997642 3455666665 65543321
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHH-cCCceeEeeccc
Q 018295 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFD 227 (358)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~-~Gi~A~~ld~~d 227 (358)
++.++++.. ..+.+..++..+|+.||+.+|++ +|+++.++++.+
T Consensus 69 ----------~~~~g~~~~-------------------------~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~ 113 (255)
T 2jjx_A 69 ----------AEEWGIDRV-------------------------EADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIP 113 (255)
T ss_dssp ----------HHHTTCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSC
T ss_pred ----------HHHcCCCCC-------------------------ChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHH
Confidence 122333321 00111222336899989999999 999999999988
Q ss_pred eEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEee
Q 018295 228 IGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 228 ~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~T 307 (358)
.+++++ ......+. .+++.+.|||++| + + .++.+ . +|++|+.+|.+|+|++++|||
T Consensus 114 ~~~v~~---------~~~~~~~~-----~lL~~g~IpVi~g--g-~-g~~~v---t---tD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 114 FNAVAE---------PYIRLRAV-----HHLDNGYIVIFGG--G-N-GQPFV---T---TDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp CCSSSE---------ECCHHHHH-----HHHHTTCEEEEES--T-T-SCSSC---C---SHHHHHHHHHHHTCSEEEEEE
T ss_pred cCcccC---------cccHHHHH-----HHHhCCcEEEEeC--C-C-CCCcc---c---hHHHHHHHHHhcCCCEEEEEe
Confidence 643322 11122222 2357889999998 3 2 12222 2 699999999999999999999
Q ss_pred -cCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 308 -DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 308 -DVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||||||++||+++|++++|++|||+|+.++ |++++||.|++++++.+
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~g 217 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYN 217 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHT
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcC
Confidence 999999999999999999999999988774 99999999999998643
No 13
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.94 E-value=1.8e-25 Score=208.92 Aligned_cols=196 Identities=23% Similarity=0.253 Sum_probs=142.6
Q ss_pred CceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHH
Q 018295 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (358)
Q Consensus 80 ~~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i 151 (358)
+.++|+||||+++. |.+.++++++.|.... .+..+|+|+..|.+.+.+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~--------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA--------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC---------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH---------------------
Confidence 56799999999998 7889999999987642 233444444445554322100
Q ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 152 KDLHHRTVDELG-IDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 152 ~~~~~~~~~~L~-~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
.+| .+ ....|++-.+.+.+|+.+++.+|+++|++++.+++.+++.
T Consensus 66 ---------~~G~~~-------------------------~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~ 111 (240)
T 4a7w_A 66 ---------QGGIIR-------------------------RTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKE 111 (240)
T ss_dssp ------------CCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred ---------hcCCCC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCc
Confidence 012 11 1222334335678999999999999999999999887532
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
++ + ..+.+.+.. +++++.|||++|+.|. . . +.+|++|+.+|.+|+|+.+++|||||
T Consensus 112 ~~-------~--~~~~~~i~~-----lL~~g~ipVi~~~~g~------~-~---~~~D~~Aa~lA~~l~Ad~li~lTdVd 167 (240)
T 4a7w_A 112 IC-------E--SYIYRKAIR-----HLEKGRVVIFGAGTGN------P-F---FTTDTAATLRAIEIGSDLIIKATKVD 167 (240)
T ss_dssp TS-------E--ECCHHHHHH-----HHHTTCEEEEESTTSC------T-T---SCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred cc-------C--cCcHHHHHH-----HHHCCCEEEEeCCCCC------C-C---CChHHHHHHHHHHcCCCEEEEccCCC
Confidence 11 1 122333432 2478899999995442 1 1 23899999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|+|+++++++|+|+.+ .|++++||++..++.+.+
T Consensus 168 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~m~~~a~~~a~~~g 211 (240)
T 4a7w_A 168 GIYDKDPNKFKDAKKLDTLSYNDALI---GDIEVMDDTAISLAKDNK 211 (240)
T ss_dssp SEESSCTTTCTTCCEESEECHHHHHH---SSCCSSCHHHHHHHHHTT
T ss_pred ceECCCCCCCCCCeEcceecHHHHHh---cCccccHHHHHHHHHHCC
Confidence 99999999999999999999999877 489999999999998764
No 14
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.93 E-value=7e-25 Score=205.85 Aligned_cols=197 Identities=20% Similarity=0.198 Sum_probs=146.6
Q ss_pred CCceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~-------s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
.+.++|+||||+++. +.+.++++++.|.... .+..+|+|++.|...+...
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~---------------------- 63 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP---------------------- 63 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH----------------------
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch----------------------
Confidence 346899999999999 4689999999887642 3345666665565544321
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
+++++.++ +..|.+..+++.+|..++..+|.+.|+++.++++.+.+.
T Consensus 64 --------~~~lg~~~-------------------------~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~ 110 (252)
T 1z9d_A 64 --------AADAGMDR-------------------------VQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQN 110 (252)
T ss_dssp --------HHHHTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTT
T ss_pred --------HHHcCCCC-------------------------CchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecccccc
Confidence 11233332 122344568889999999999999999999998876422
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEee-cC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DV 309 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~T-DV 309 (358)
+.+ .+ . ...+ ..+++.+.|||++|+. |. .++++|++|+.+|.+|+|++++||| ||
T Consensus 111 ~~~-------~~-~-~~~~-----~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DV 166 (252)
T 1z9d_A 111 VAE-------PY-I-RGRA-----LRHLEKNRIVVFGAGI------GS----PYFSTDTTAALRAAEIEADAILMAKNGV 166 (252)
T ss_dssp TBE-------EC-C-HHHH-----HHHHHTTCEEEEESTT------SC----TTCCHHHHHHHHHHHTTCSEEEEEESSC
T ss_pred ccC-------cc-h-HHHH-----HHHHhCCCEEEEeCCc------CC----CCCChHHHHHHHHHhcCCCEEEEecCCC
Confidence 111 10 1 1222 2345789999999833 22 2456999999999999999999999 99
Q ss_pred CccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||||++||+++|++++|++|+++|+.+ +|+.++|+++..++.+.+
T Consensus 167 dGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~g 211 (252)
T 1z9d_A 167 DGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDND 211 (252)
T ss_dssp CSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTT
T ss_pred CeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcC
Confidence 999999999999999999999999876 588999999999987654
No 15
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.93 E-value=5.2e-25 Score=202.09 Aligned_cols=184 Identities=21% Similarity=0.270 Sum_probs=136.9
Q ss_pred ceEEEEeCccccCC-HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLAS-AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 81 ~~~V~KFGGSSl~s-~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
+++|+||||+++.+ .+.++++++.|....++..+|+|++.|..++.++.. +
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~ggG~~~~~~~~~----------------------------~ 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKS----------------------------A 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHH----------------------------H
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECcchHhcchHHH----------------------------H
Confidence 46899999999999 899999999997542133344444447777765432 1
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
++++.+ +...|.+.+.++.+++.|++.+|+.. +. .
T Consensus 53 ~~~g~~-------------------------~~~l~~~~~~~~~~~~~l~~~~~~~~-~~------~------------- 87 (219)
T 2ij9_A 53 RELGAS-------------------------ETFCDYIGIAATRLNAMLLISAIPSA-AK------K------------- 87 (219)
T ss_dssp HHTTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHCTTB-CS------S-------------
T ss_pred HHcCCC-------------------------ccchHHHHHHHHHHHHHHHHHHHHHh-cC------C-------------
Confidence 233332 34556677778899999999766543 11 0
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~ 319 (358)
...+.+.+.. +++.+.|||++| | .. .|.+|++|+.+|.+|+|++++|||||||||++||++
T Consensus 88 --~~~~~~~i~~-----ll~~g~ipVi~~--g------~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~ 148 (219)
T 2ij9_A 88 --VPVDFMEAEE-----LSKLYRVVVMGG--T------FP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKS 148 (219)
T ss_dssp --CCSSHHHHHH-----HHTTCSEEEECC--C------SS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSS
T ss_pred --CcCCHHHHHH-----HHHCCCEEEEeC--C------CC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCC
Confidence 0122333433 357899999998 2 11 134999999999999999999999999999999999
Q ss_pred CCCCcccCCcCHHHHHHHHHC-CC-----CcccHhhHHHHHhc
Q 018295 320 HPHAKPVPYLTFDEAAELAYF-GA-----QVYIFEAVNVIELC 356 (358)
Q Consensus 320 v~~Ak~i~~Lsy~EA~eLa~~-Ga-----kVLHP~ai~~a~~~ 356 (358)
+|+++++++++++|+.+++.. |+ .+.|+.+++++++.
T Consensus 149 ~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~ 191 (219)
T 2ij9_A 149 DTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERS 191 (219)
T ss_dssp SSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHH
T ss_pred CCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHC
Confidence 999999999999999999776 55 89999999998864
No 16
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.93 E-value=4.2e-25 Score=206.62 Aligned_cols=187 Identities=20% Similarity=0.231 Sum_probs=140.9
Q ss_pred CceEEEEeCccccC----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (358)
Q Consensus 80 ~~~~V~KFGGSSl~----s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (358)
.+++|+||||+++. +.+.++++++.|....++..+|+|++.|..++.+++
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~-------------------------- 72 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIE-------------------------- 72 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHH--------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHH--------------------------
Confidence 46799999999999 778999999998764224445666655555554322
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
.++.++++ ....+.+...|+.+++.|++..|+++|+++ +
T Consensus 73 --~~~~~gl~-------------------------~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 73 --VAEKFNSS-------------------------ETFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp --HHHTTTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred --HHHHcCCC-------------------------cccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 12234433 345566777799999999998999999764 1
Q ss_pred CCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccC
Q 018295 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (358)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyta 315 (358)
..+.+.+.. +++.+.|||++| +. . .+.+|++|+.+|.+|+|++++|||||||||++
T Consensus 112 -------~~~~~~i~~-----lL~~g~IpVi~g--g~--~--------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAWK-----AVQLKKIPVMGG--TH--P--------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHHH-----HHHTTCBCEECC--CS--T--------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHHH-----HHhCCCEEEEcC--CC--C--------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 011233332 347889999998 21 1 12389999999999999999999999999999
Q ss_pred CCCCCCCCcccCCcCHHHHHHHHHC-CC-----CcccHhhHHHHHhcc
Q 018295 316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVYIFEAVNVIELCK 357 (358)
Q Consensus 316 DP~~v~~Ak~i~~Lsy~EA~eLa~~-Ga-----kVLHP~ai~~a~~~~ 357 (358)
||+++|++++|++|+++|+.+++.. |+ .+.|+.|++++++.+
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~ 215 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSG 215 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHT
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCC
Confidence 9999999999999999999999654 55 899999999998653
No 17
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.92 E-value=1.5e-24 Score=203.18 Aligned_cols=197 Identities=19% Similarity=0.202 Sum_probs=143.6
Q ss_pred CCceEEEEeCccccCC-------HHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 79 KQLTCVMKFGGSSLAS-------AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s-------~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
...++|+|+||+++.+ .+.++++++.|.... .+..+|+|+..|.+.....
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~---------------------- 65 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAG---------------------- 65 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTT----------------------
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH----------------------
Confidence 3567999999999986 578999999987643 2344444444344322110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
...++++. ...|++.....++|+.+++.+|++.|++++.+++.+++.
T Consensus 66 --------~~~~g~~~-------------------------~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 66 --------LAASGMDR-------------------------VTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp --------TSCSSSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred --------HHHcCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 00123322 223334344568999999999999999999999887543
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
++. ..+.+.+.. +++++.|||++|+.|. . .+.+|++|+.+|.+|+|+.+++|||||
T Consensus 113 v~~---------~~~~~~~~~-----lL~~g~IpVv~~~~g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCE---------DFIRRRAIR-----HLEKGRIAIFAAGTGN------P----FFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBE---------ECCHHHHHH-----HHHTTCEEEEESTTSS------T----TCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccC---------cCCHHHHHH-----HHHCCcEEEEECCCCC------C----cCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 221 122233332 3478999999995432 1 244899999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|+|+++++++|+|+.+ .|.+++|+++..++.+.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~g 212 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSD 212 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTT
T ss_pred ccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCC
Confidence 99999999999999999999999876 488999999999998764
No 18
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.8e-24 Score=205.39 Aligned_cols=198 Identities=21% Similarity=0.289 Sum_probs=139.5
Q ss_pred CCCceEEEEeCccccC------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 78 EKQLTCVMKFGGSSLA------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 78 ~~~~~~V~KFGGSSl~------s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
.+..++|+|+||+++. +.+.++++++.|.... .+..|||||..|.+...+...
T Consensus 48 ~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~-------------------- 107 (281)
T 3nwy_A 48 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ-------------------- 107 (281)
T ss_dssp CCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTT--------------------
T ss_pred CcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHH--------------------
Confidence 3457899999999998 5789999999997643 344555555445453322100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
.++++ ....|++..+++++|+.+++..|+++|++++.+.+.+.+.
T Consensus 108 ----------~~gl~-------------------------~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~ 152 (281)
T 3nwy_A 108 ----------QLGME-------------------------RTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQ 152 (281)
T ss_dssp ----------TTTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGG
T ss_pred ----------hcCCC-------------------------ccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccc
Confidence 12222 1223556567889999999999999999998777655432
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
++. .| ++.+.. .+++.+.|||+.|+.| .. .+.+|++|+.+|.+|+|+.+++|||||
T Consensus 153 ~~~-~~------------~~~~~l-~lL~~g~IpVv~g~~g------~~----~~~~D~~Aa~lA~~l~Ad~LiilTDVd 208 (281)
T 3nwy_A 153 VAE-PY------------LPLRAV-RHLEKGRVVIFGAGMG------LP----YFSTDTTAAQRALEIGADVVLMAKAVD 208 (281)
T ss_dssp GSE-EC------------CHHHHH-HHHHTTCEEEEESTTS------ST----TCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred ccc-cc------------chHHHH-HHHHcCCeEEEECCCC------CC----CCCHHHHHHHHHHHcCCCEEEEeeccC
Confidence 221 11 111222 2357899999998433 21 255999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
|||++||+++|+|+++++++|+|+.+ .|..++|+.+..++.+.+
T Consensus 209 GVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~G 252 (281)
T 3nwy_A 209 GVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNG 252 (281)
T ss_dssp SCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTT
T ss_pred ccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCC
Confidence 99999999999999999999999754 589999999999998754
No 19
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.91 E-value=3.7e-24 Score=203.85 Aligned_cols=194 Identities=19% Similarity=0.219 Sum_probs=141.6
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 82 ~~V~KFGGSSl~s--~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
++|+||||+ +.+ .+.+.++++.|.....+..+|+||+.+...+.+++. .
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~----------------------------~ 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSV----------------------------G 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHH----------------------------H
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhc----------------------------c
Confidence 899999999 888 689999999998643344566666545443332221 0
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCc
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a 239 (358)
.+.+. +....+.+...++.+|..+++.++.+.|++++.+..
T Consensus 92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~~-------------- 132 (276)
T 2ogx_A 92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPT-------------- 132 (276)
T ss_dssp HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHHH--------------
T ss_pred CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC--------------
Confidence 01222 234555666667889999999888788886542210
Q ss_pred eeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcE-EeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCC
Q 018295 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (358)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~-ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~ 318 (358)
..+.+.. +++.+.|||++||.+.+. ++.+ ..+.++++|++|+.+|.+|+|++++|||||||||++||+
T Consensus 133 -----~~~~i~~-----lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 133 -----VADQLAI-----HLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp -----HHHHHHH-----HHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred -----hHHHHHH-----HHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 1122222 346789999999977651 1111 122455699999999999999999999999999999999
Q ss_pred --CCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhc
Q 018295 319 --IHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELC 356 (358)
Q Consensus 319 --~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~ 356 (358)
.+|++++|++|+++|+.+++ |..++||++...++.+
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~ 239 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATA 239 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTC
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHh
Confidence 89999999999999999887 8999999999888754
No 20
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.91 E-value=4.5e-23 Score=194.13 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=134.6
Q ss_pred CceEEEEeCccccCC-------HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s-------~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (358)
+.++|+||||+++.+ .+.++++++.|.....+..+|+|++.|...+.+.
T Consensus 24 ~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------ 79 (256)
T 2va1_A 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------ 79 (256)
T ss_dssp CSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH------------------------
T ss_pred cCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch------------------------
Confidence 457999999999984 5688999988876433445666665566655432
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEe
Q 018295 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (358)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit 232 (358)
++.+++++. ..|....++..+++.++...|++.|++++.+.+.+.
T Consensus 80 ------~~~~g~~~~-------------------------~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~---- 124 (256)
T 2va1_A 80 ------AKELDMDRN-------------------------LADNMGMMATIINGLALENALNHLNVNTIVLSAIKC---- 124 (256)
T ss_dssp ------HHHTTCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC----
T ss_pred ------HHHcCCCCC-------------------------chhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec----
Confidence 123343321 112334455588899989999999999988875442
Q ss_pred eCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeec-CCc
Q 018295 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (358)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TD-VdG 311 (358)
+.+.+.. +.... ..+++.+.|||+.|+ +|. .++++|++|+.+|.+|+|++++|||| |||
T Consensus 125 -~~~~~~~--------~~~~~-~~lL~~g~IpVi~~~------~g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdG 184 (256)
T 2va1_A 125 -DKLVHES--------SANNI-KKAIEKEQVMIFVAG------TGF----PYFTTDSCAAIRAAETESSIILMGKNGVDG 184 (256)
T ss_dssp -TTTCEEC--------CHHHH-HHHHHTTCEEEEEST------TSS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCS
T ss_pred -ccccchh--------hHHHH-HHHHhCCcEEEEECC------CCC----CCCChhHHHHHHHHhCCCCEEEEeecccCe
Confidence 2222111 11122 234578999999982 232 24679999999999999999999999 999
Q ss_pred cccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 312 VytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
||++||+++|++++|++|+++|+.++ +..++|+++...+.+.+
T Consensus 185 Vy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~g 227 (256)
T 2va1_A 185 VYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENN 227 (256)
T ss_dssp BCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTT
T ss_pred EEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCC
Confidence 99999999999999999999999888 55778999998887654
No 21
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.90 E-value=5.3e-24 Score=202.82 Aligned_cols=213 Identities=22% Similarity=0.265 Sum_probs=149.8
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
++++|+||||+++.+.+.++++++.|.... .+..+|+|+++|..++.+++..
T Consensus 21 ~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~--------------------------- 73 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDL--------------------------- 73 (282)
T ss_dssp TCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHH---------------------------
T ss_pred CCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHc---------------------------
Confidence 367999999999999988999998887642 3444666666777777766431
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC--
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I--ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (358)
+.++. +.+++ +..++...|.+ +..|+. +.. +...|++.|++++.+++.+..++++.
T Consensus 74 ----~~~~~-----------~~~g~---r~t~~~~l~~~~~~~~G~~-~~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 133 (282)
T 2bty_A 74 ----GIEPV-----------FKNGH---RVTDEKTMEIVEMVLVGKI-NKE-IVMNLNLHGGRAVGICGKDSKLIVAEKE 133 (282)
T ss_dssp ----TCCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTH-HHH-HHHHHHTTTCCEEEEETTGGGSEEEEEC
T ss_pred ----CCCcc-----------ccCCc---ccCCHHHHHHHHHHHhhHH-HHH-HHHHHHhCCCCceecChhhCCEEEEecC
Confidence 11110 00111 12234444443 235765 444 67789999999999998876565553
Q ss_pred ----CCCC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecC
Q 018295 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (358)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDV 309 (358)
+++. +++...+.+.+... ++.+.|||++|| +.+ +.|+.++++ +|++|+.+|.+|+|++++|||||
T Consensus 134 ~~~~d~g~~g~v~~~~~~~i~~l-----l~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDV 203 (282)
T 2bty_A 134 TKHGDIGYVGKVKKVNPEILHAL-----IENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDV 203 (282)
T ss_dssp CTTCCCBSBEEEEEECTHHHHHH-----HHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CcccCCCcceEEEEecHHHHHHH-----HHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 2333 34434444444443 467899999996 777 478888887 99999999999999999999999
Q ss_pred CccccCCCCCCCCCcccCCcCHHHHHHHHHCCC----CcccHhhHHHHHhc
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA----QVYIFEAVNVIELC 356 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~Ga----kVLHP~ai~~a~~~ 356 (358)
||||++ | ++|++|+++|+.+++..|. -+.|+++...+.+.
T Consensus 204 dGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~ 247 (282)
T 2bty_A 204 DGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRG 247 (282)
T ss_dssp SSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHT
T ss_pred CCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 999997 2 8999999999999998754 34455565555443
No 22
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.90 E-value=7.4e-24 Score=203.62 Aligned_cols=209 Identities=17% Similarity=0.255 Sum_probs=148.5
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
..++|+||||+++.+.+.++++++.|.... .+..+|||+++|..++.+++..
T Consensus 36 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~--------------------------- 88 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQL--------------------------- 88 (298)
T ss_dssp TCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHT---------------------------
T ss_pred CCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHc---------------------------
Confidence 367999999999999988888888876542 2344666666777777665421
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC-
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I--ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~- 235 (358)
+.++. +.+++ +..++...|.+ ++.|+. |. .++..|++.|++++.+++.+..+++...
T Consensus 89 ----~~~~~-----------~~~g~---R~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 148 (298)
T 2rd5_A 89 ----NIPAE-----------FRDGL---RVTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPV 148 (298)
T ss_dssp ----TCCCC-----------EETTE---ECBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEEC
T ss_pred ----CCCcc-----------ccCCc---ccCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeC
Confidence 11110 00111 12234444543 224665 54 4677899999999999988766666643
Q ss_pred -----CCC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecC
Q 018295 236 -----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (358)
Q Consensus 236 -----~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDV 309 (358)
++. +++...+.+.++.. ++++.|||++|+ +.+ ..|+.++++ +|++|+.+|.+|+|++++|||||
T Consensus 149 ~~~~d~g~~g~v~~v~~~~i~~l-----L~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdV 218 (298)
T 2rd5_A 149 PNSAQLGFVGEVARVDPSVLRPL-----VDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDV 218 (298)
T ss_dssp TTHHHHBSEEEEEEECGGGHHHH-----HHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CccccCCcceEEEEECHHHHHHH-----HhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 222 23333344444433 478899999986 777 478899997 99999999999999999999999
Q ss_pred CccccCCCCCCCCCcccCCcCHHHHHHHHHCC--CCcccHh
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVYIFE 348 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G--akVLHP~ 348 (358)
||||++||+ | +++|++|+++|+.+++..| ..-++|+
T Consensus 219 dGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~K 256 (298)
T 2rd5_A 219 AGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPK 256 (298)
T ss_dssp SSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHH
T ss_pred cCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHH
Confidence 999999998 4 9999999999999998864 2346664
No 23
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.90 E-value=7e-23 Score=194.33 Aligned_cols=194 Identities=15% Similarity=0.258 Sum_probs=134.8
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (358)
Q Consensus 82 ~~V~KFGGSSl~s--~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (358)
++|+||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+..
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 7899999999987 5789999998876432244666665555433322110
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHH--HHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC
Q 018295 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY--LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (358)
Q Consensus 160 ~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~--Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~ 237 (358)
.+++.+. ...+. ..+.| ++..++...|+++|++. ++..+
T Consensus 90 ~~~g~~~-------------------------~~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d-- 130 (270)
T 2ogx_B 90 AGLGLPA-------------------------GVLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAG-- 130 (270)
T ss_dssp HHTTCCH-------------------------HHHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSST--
T ss_pred HhcCCCh-------------------------HHHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhh--
Confidence 1123221 11111 23334 45666777888899872 22211
Q ss_pred CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC---CcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR---gGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
...+.. +++.+.|||++||.|.+...+.+ +.|+ +++|++|+.+|.+|+|+++++||||||||+
T Consensus 131 --------~~~i~~-----lL~~g~ipVi~g~~g~~~~~~~~-~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~ 196 (270)
T 2ogx_B 131 --------LSAVPL-----SLAEVNAVVFSGMPPYKLWMRPA-AEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYT 196 (270)
T ss_dssp --------TCHHHH-----HCTTCCEEEEECSCTTGGGCCCC-SSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEES
T ss_pred --------HHHHHH-----HHhCCCEEEEeCCcccccccccc-ccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccC
Confidence 122332 34788999999997754211221 3333 679999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHhhHHHHHhcc
Q 018295 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFEAVNVIELCK 357 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ai~~a~~~~ 357 (358)
+||+.+|+++++++++++|+.+++..| +++|+..+..++.++
T Consensus 197 ~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~ 238 (270)
T 2ogx_B 197 ANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQ 238 (270)
T ss_dssp SCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCS
T ss_pred CCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhh
Confidence 999999999999999999999998766 789988877777653
No 24
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.90 E-value=5.9e-23 Score=194.58 Aligned_cols=216 Identities=15% Similarity=0.124 Sum_probs=140.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 018295 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (358)
Q Consensus 82 ~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (358)
++|+||||+++. .++++++.|.... .+..+|+|++.|...+.+++.
T Consensus 1 ~iViKlGGs~l~---~~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~------------------------------ 47 (269)
T 2egx_A 1 MIVVKVGGAEGI---NYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEA------------------------------ 47 (269)
T ss_dssp CEEEEECCSTTC---CHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHH------------------------------
T ss_pred CEEEEECHHHHH---HHHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHH------------------------------
Confidence 579999999997 6777777765532 233344555445444444431
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHh--HHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCC-
Q 018295 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF--GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT- 237 (358)
Q Consensus 161 ~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~--GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~- 237 (358)
++.+.. ..++.+++ ..+..++...+.+... |+. ...+...|+++|+++..+++.|.+++++...+
T Consensus 48 -~~~~~~--------~~~~~~g~-~~rvt~~~~l~~~~~~~~G~i--~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~ 115 (269)
T 2egx_A 48 -LGHPPR--------FLTHPGGQ-VSRLTDRKTLEIFEMVYCGLV--NKRLVELLQKEGANAIGLSGLDGRLFVGRRKTA 115 (269)
T ss_dssp -TTCCCC--------C--------CCCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHTTCCEEEEETTGGGCEEECBC--
T ss_pred -cCCccc--------cccccCCc-cCcCCCHHHHHHHHHHHHhHH--HHHHHHHHHHCCCCeEEeCCCCccceeeeeccc
Confidence 122100 00111222 0012345566666554 555 45677889999999999999997777764332
Q ss_pred ----------------CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCc
Q 018295 238 ----------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQ 301 (358)
Q Consensus 238 ----------------~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~ 301 (358)
.+++...+.+.+.. +++.+.|||+++ ++.+ .+|++++.+ +|++|+.+|.+|+|+
T Consensus 116 ~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~-----ll~~g~ipVi~~-v~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad 185 (269)
T 2egx_A 116 VKYVENGKVKVHRGDYTGTVEEVNKALLDL-----LLQAGYLPVLTP-PALS-YENEAINTD---GDQIAALLATLYGAE 185 (269)
T ss_dssp --------------CCEECCCEECHHHHHH-----HHHTTCEEEEEC-CEEE-TTSCEEEEC---HHHHHHHHHHHHTCS
T ss_pred ccccccccccCCcCCCCCCceEECHHHHHH-----HHHCCCEEEEcC-cEEC-CCCCEEEeC---HHHHHHHHHHHcCCC
Confidence 12333333444433 347889999996 7777 478887666 999999999999999
Q ss_pred eEEEeecCCccccCCCCCCCCCcccCCcCHHHHH--HHHHCCCCcccHh--hHHHHHh
Q 018295 302 EIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA--ELAYFGAQVYIFE--AVNVIEL 355 (358)
Q Consensus 302 ~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~--eLa~~GakVLHP~--ai~~a~~ 355 (358)
++++||||||||+ ||+ |+++++++|+++|+. +|+.++...++|+ +...+.+
T Consensus 186 ~li~lTdVdGv~~-dp~--~~a~~i~~i~~~e~~~~~l~~~~~ggm~~Kl~aa~~a~~ 240 (269)
T 2egx_A 186 ALVYLSNVPGLLA-RYP--DEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVK 240 (269)
T ss_dssp EEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCchhhhc-CCC--CCccccccCCHHHhhHHHhcCCCCCchHHHHHHHHHHHH
Confidence 9999999999999 993 799999999999999 9988888899985 4444433
No 25
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.90 E-value=2.7e-23 Score=197.27 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCC--CcEE
Q 018295 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (358)
Q Consensus 203 ~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~--G~~t 280 (358)
.+|.. +.++|+++|++++++++.+.++++. +++...+.+.+... ++++.|||++||++.+ .+ |+++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~l-----L~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRSY-----LEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHHH-----HHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHHH-----HHCCCEEEECCCEEec-ccccCcce
Confidence 67776 5778999999999999999866652 34544555555443 4678999999999987 47 8888
Q ss_pred eeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHH
Q 018295 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA 338 (358)
Q Consensus 281 tlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa 338 (358)
+++ +|++|+.+|.+|+|+++++||||||||++||+++|+++++++++++|+.++.
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l 211 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESL 211 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHh
Confidence 887 9999999999999999999999999999999999999999999999997764
No 26
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.89 E-value=5.3e-23 Score=203.38 Aligned_cols=206 Identities=17% Similarity=0.283 Sum_probs=114.0
Q ss_pred CceEEEEeCccccCC------HHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s------~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~ 152 (358)
..++|+||||+++.+ .+.+.++++.|.... .+..+|+||..+ +.--+
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg-i~~g~------------------------- 57 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA-IAAGR------------------------- 57 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHHH-------------------------
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH-HHHHH-------------------------
Confidence 367999999999998 478999998887642 334455554332 21100
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEe
Q 018295 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (358)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit 232 (358)
..|+.+. +..+-...+.+.+.|+.....++...|+++|+++.. + +++
T Consensus 58 -------~~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~q-----v-llt 104 (367)
T 2j5v_A 58 -------EHLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQ-----M-LLT 104 (367)
T ss_dssp -------HHHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEE-----E-EEC
T ss_pred -------HHcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE-----E-EEe
Confidence 0222221 012234556667899998999999999999999864 3 455
Q ss_pred eCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEe--eCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
.+++.+. ..+.+....+ ..+++.+.|||+.+ ++.+.+ +.+|++|++|+.+|.+|+|+.++||||||
T Consensus 105 ~~d~~~~----~r~~n~~~~i-~~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVd 172 (367)
T 2j5v_A 105 RADMEDR----ERFLNARDTL-RALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQK 172 (367)
T ss_dssp GGGGSSH----HHHHHHHHHH-HHHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred cccccCc----eEEEhHHHHH-HHHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCC
Confidence 5554331 1111222233 34467899999964 222333 67888999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCH--HHHHHHHH-----CCCCcccH--hhHHHHHhc
Q 018295 311 GVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVYIF--EAVNVIELC 356 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy--~EA~eLa~-----~GakVLHP--~ai~~a~~~ 356 (358)
|||++||+++|++++|+++++ +|+.+++. +|...+|| ++...+.++
T Consensus 173 Gvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~ 227 (367)
T 2j5v_A 173 GLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRA 227 (367)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHT
T ss_pred ceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHc
Confidence 999999999999999999999 99999976 48889999 566666554
No 27
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.88 E-value=7.1e-23 Score=199.00 Aligned_cols=209 Identities=18% Similarity=0.260 Sum_probs=147.2
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
++++|+||||+++.+++.++++++.|.... .+..+|||++.|...+.+++
T Consensus 49 ~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~----------------------------- 99 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLG----------------------------- 99 (321)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH-----------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------------------------
Confidence 367999999999999888888888876532 23345555554656555543
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC--
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I--ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (358)
.+++++. +.+|+ +..++...|.+ ++.|+. |.. +...|++.|++++.+++.+..++++.
T Consensus 100 --~~g~~~~-----------~~~g~---Rvt~~~~l~~~~~~~~G~i-n~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~~ 161 (321)
T 2v5h_A 100 --RVGIEPQ-----------FHNGL---RVTDADTMEVVEMVLVGRV-NKD-IVSRINTTGGRAVGFCGTDGRLVLARPH 161 (321)
T ss_dssp --HTTCCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTH-HHH-HHHHHHHHTCCEEEECTTGGGSEEEEEC
T ss_pred --HcCCCcc-----------ccCCc---ccCCHHHHHHHHHHHhChH-HHH-HHHHHHhCCCCeeeeChhhccEEEeecC
Confidence 1222210 01111 12334555555 334654 554 67789999999999988865566553
Q ss_pred ---CCCC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+++. +++...+.+.+.. +++.+.|||+++ ++.+ ..|+..+++ +|++|+.+|.+|+|++++|+||||
T Consensus 162 ~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDVd 231 (321)
T 2v5h_A 162 DQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDTR 231 (321)
T ss_dssp SSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCCC
Confidence 4443 2343333443443 347899999995 6777 478876666 999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHHHHHHHHCC--CCcccHh
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVYIFE 348 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G--akVLHP~ 348 (358)
|||++||+ ++++|++|+++|+.+++..| +..++|+
T Consensus 232 GVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~K 268 (321)
T 2v5h_A 232 GILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPK 268 (321)
T ss_dssp SCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHH
T ss_pred ceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHH
Confidence 99999998 69999999999999998864 5678874
No 28
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.88 E-value=5.7e-23 Score=196.63 Aligned_cols=201 Identities=14% Similarity=0.103 Sum_probs=134.0
Q ss_pred ceEEEEeCccccCCHH--------HHHHHHHHHHcCC-CCC-cEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 81 LTCVMKFGGSSLASAE--------RMREVAELILSFP-NER-PVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 81 ~~~V~KFGGSSl~s~e--------~i~~Va~iI~~~~-~~~-~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
.++|+||||+++.+.+ .++++++.|.... .+. ++||||+.|...+.+++..
T Consensus 24 ~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~------------------- 84 (286)
T 3d40_A 24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDH------------------- 84 (286)
T ss_dssp SEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC---------------------------
T ss_pred CEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHc-------------------
Confidence 4899999999999864 7888888887642 232 5778899999888765421
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
+.+. .+. +...+.|+......+..+|+++|+++..+.+.+..+
T Consensus 85 ------------~~~~---------------------~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~ 127 (286)
T 3d40_A 85 ------------DSTH---------------------AFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCT 127 (286)
T ss_dssp -------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEE
T ss_pred ------------CCCc---------------------ccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCc
Confidence 0000 011 011222222234467888999999999999988754
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHH-cCCceEEEeecC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKDV 309 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~a-L~A~~l~i~TDV 309 (358)
+.+ + +.....+.+... ++.+.|||++||++.+ .+|+..+.+ +|++|+.+|.+ |+|++++|||||
T Consensus 128 -t~d--g---~~~~~~~~i~~l-----L~~g~IpVi~gd~~~~-~~g~~~~~~---~D~~Aa~lA~~~l~Ad~LiilTDV 192 (286)
T 3d40_A 128 -LRN--G---IPQLRSEVLRDV-----LDHGALPVLAGDALFD-EHGKLWAFS---SDRVPEVLLPMVEGRLRVVTLTDV 192 (286)
T ss_dssp -EET--T---EEEECCSHHHHH-----HHTTCEEEEECEEEEB-TTSCEEEEC---GGGHHHHTTTTCCSCEEEEEEESS
T ss_pred -ccC--C---eEEehHHHHHHH-----HHCcCEEEEcCCeEEc-CCCCEEeeC---HHHHHHHHHHhhCCCCEEEEecCC
Confidence 433 1 322333334432 4788999999999887 477764444 99999999999 999999999999
Q ss_pred CccccCCCCCCCCCcccCCcCHHHHHHHHH--------CCCCcccHh--hHHHHHh
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVYIFE--AVNVIEL 355 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~--------~GakVLHP~--ai~~a~~ 355 (358)
||||++||+ ++++|++|+++|+.+|.. ++...++|+ +...+.+
T Consensus 193 dGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~ 245 (286)
T 3d40_A 193 DGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCAR 245 (286)
T ss_dssp SSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHH
T ss_pred CeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHH
Confidence 999999998 899999999998777732 466788884 4444433
No 29
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.88 E-value=1.5e-22 Score=189.53 Aligned_cols=204 Identities=19% Similarity=0.230 Sum_probs=138.4
Q ss_pred ceEEEEeCccccC-----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHH
Q 018295 81 LTCVMKFGGSSLA-----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (358)
Q Consensus 81 ~~~V~KFGGSSl~-----s~e~i~~Va~iI~~~~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (358)
.++|+||||+++. +.+.++++++.|....+...+|+|+..| +...+.
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgGg-~~~~~~--------------------------- 53 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAA-ISAGHT--------------------------- 53 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCH-HHHHHH---------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCH-HHHHHH---------------------------
Confidence 4689999999999 7889999999887642114455665433 221111
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC
Q 018295 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (358)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~ 235 (358)
.++.+. ......+.+.+.|+....+++..+|+++|+++..+ ..+.++
T Consensus 54 -----~~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~~ 100 (251)
T 2ako_A 54 -----KLDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKD 100 (251)
T ss_dssp -----HCCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGG
T ss_pred -----HhCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------Eeccch
Confidence 122221 00122356778899999999999999999997643 333333
Q ss_pred CCCceeeccchHHHHH-HHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcccc
Q 018295 236 FTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (358)
Q Consensus 236 ~~~a~i~~~~~~~i~~-~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVyt 314 (358)
+.. + ..++.. .....+++++.|||++|+-+.. .++. .++++|++|+.+|.+|+|++++|||||||||+
T Consensus 101 ~~~-~-----~~~~~~~~~i~~ll~~g~ipVi~~~d~v~--~~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~ 169 (251)
T 2ako_A 101 FDS-R-----KATKHAKNAIDMMINLGILPIINENDATA--IEEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYD 169 (251)
T ss_dssp GGC-H-----HHHHHHHHHHHHHHHTTCEEEEEECTTTC--CHHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBS
T ss_pred hcC-c-----ceEehHHHHHHHHHHCCCEEEEeCCCcee--ecce---eecCchHHHHHHHHhcCCCEEEEEeCCCceee
Confidence 311 1 122222 2333456789999999742221 1122 35679999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCcCHH--HHHHHHH-----CCCC--cccHhhHHHHHhc
Q 018295 315 CDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQ--VYIFEAVNVIELC 356 (358)
Q Consensus 315 aDP~~v~~Ak~i~~Lsy~--EA~eLa~-----~Gak--VLHP~ai~~a~~~ 356 (358)
+||+++|++++|++||++ |+.+++. +|.. +.|+++...+.+.
T Consensus 170 ~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~ 220 (251)
T 2ako_A 170 KNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEH 220 (251)
T ss_dssp SCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHC
Confidence 999999999999999999 9999976 6666 5566677666554
No 30
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.87 E-value=1e-21 Score=189.04 Aligned_cols=206 Identities=17% Similarity=0.263 Sum_probs=145.6
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
+.++|+||||+++.+.+.+..+++.|.... .+..+|+|++.|...+.+++.
T Consensus 26 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~---------------------------- 77 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKR---------------------------- 77 (300)
T ss_dssp TCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHH----------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH----------------------------
Confidence 367999999999999888888888876542 233455555556666655432
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeCC-
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I--ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~- 235 (358)
++.++. +.+|+ +..++...|.+ ++.|+. ...+...|++.|++++.+++.+.++++...
T Consensus 78 ---~g~~~~-----------~~~g~---rvt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~ 138 (300)
T 2buf_A 78 ---LSIESH-----------FIDGM---RVTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKL 138 (300)
T ss_dssp ---TTCCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEEC
T ss_pred ---cCCCcc-----------ccCCe---ecCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeec
Confidence 222210 01111 12234555555 335776 456778899999999999988766766542
Q ss_pred ----------------CCC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHc
Q 018295 236 ----------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKAL 298 (358)
Q Consensus 236 ----------------~~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL 298 (358)
++. +++...+.+.+.. +++++.|||+++ ++.+ ..|+..+++ +|++|+.+|.+|
T Consensus 139 ~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l 208 (300)
T 2buf_A 139 TVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNM-----LVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEAL 208 (300)
T ss_dssp CCCCC--------CCCCBSBEEEEEECHHHHHH-----HHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHH
T ss_pred cccccchhhcccccccCCcceeEEEECHHHHHH-----HHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHHc
Confidence 222 2332334443433 347899999995 6777 578888887 999999999999
Q ss_pred CCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCC--CCcccHh
Q 018295 299 GLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVYIFE 348 (358)
Q Consensus 299 ~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G--akVLHP~ 348 (358)
+|++++|||||||||++ +++++++|+++|+.+++..| ...++|+
T Consensus 209 ~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~K 254 (300)
T 2buf_A 209 KAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPK 254 (300)
T ss_dssp TCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHH
T ss_pred CCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHH
Confidence 99999999999999987 48899999999999998864 5778884
No 31
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.86 E-value=6.6e-21 Score=178.82 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=126.4
Q ss_pred CceEEEEeCccccCCH--------HHHHHHHHHHHcCCCCCcE-EEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHH
Q 018295 80 QLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~--------e~i~~Va~iI~~~~~~~~v-VVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~ 150 (358)
+.++|+||||+++.+. +.++++++.|.. +.++| +|+++ |...+.+++
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~--------------------- 58 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAM--------------------- 58 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHH---------------------
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHH---------------------
Confidence 5689999999999986 479999999876 45555 55554 666555332
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHhHHHHHHHHHHHHHHHcCCceeEeeccceEE
Q 018295 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (358)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Ils~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~i 230 (358)
++++++...... -.++ +..+..+ + .+|..++ ..|+++|++++++++.++++
T Consensus 59 ----------~~gi~~~~~~~d-------~~gl--------~~t~~~~--~-~ln~~~v-~~l~~~G~~a~~l~~~~~~~ 109 (249)
T 3ll5_A 59 ----------EFGLPGPKNPRS-------SIGY--------SIVHRDM--E-NLDLMVI-DAMIEMGMRPISVPISALRY 109 (249)
T ss_dssp ----------HHTCSEECCHHH-------HHHH--------HHHHHHH--H-HHHHHHH-HHHHHTTCCEEECCGGGSCB
T ss_pred ----------HhCCCcCCCccc-------cccH--------HHHHHHH--H-HHHHHHH-HHHHHCCCcEEEEcHHHccc
Confidence 222222110000 0011 1111112 2 7788887 77999999999999998643
Q ss_pred EeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
.+++ +.+.+... ++++.|||++|+++.+ .+|+.++++ +|++|+.+|.+|+|+++++|||||
T Consensus 110 -------~g~v---~~~~i~~l-----l~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdvd 170 (249)
T 3ll5_A 110 -------DGRF---DYTPLIRY-----IDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDVD 170 (249)
T ss_dssp -------SSSB---CCHHHHHH-----HHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESSS
T ss_pred -------ccEE---cHHHHHHH-----HHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCCC
Confidence 1233 23334432 4788999999988876 356766666 999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcC
Q 018295 311 GVLTCDPNIHPHAKPVPYLT 330 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Ls 330 (358)
|||++||+++|+++++++++
T Consensus 171 Gv~~~dp~~~~~a~~i~~i~ 190 (249)
T 3ll5_A 171 GIYSKDPKRNPDAVLLRDID 190 (249)
T ss_dssp SCBSSCTTTCTTCCBCCEEC
T ss_pred ccCCCCCCCCCCcEEHHHHH
Confidence 99999999999999999985
No 32
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.85 E-value=4.4e-21 Score=185.83 Aligned_cols=206 Identities=16% Similarity=0.112 Sum_probs=133.8
Q ss_pred ceEEEEeCccccC--CH--------HHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHH
Q 018295 81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (358)
Q Consensus 81 ~~~V~KFGGSSl~--s~--------e~i~~Va~iI~~~~--~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l 148 (358)
.++|+||||+++. +. +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 3 k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~-------------- 68 (314)
T 1e19_A 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ-------------- 68 (314)
T ss_dssp CEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--------------
T ss_pred CEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--------------
Confidence 5789999999999 53 57888888886542 3455666666656666665432100
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHH--HhHH---HHHHHHHHHHHHHcCCce---
Q 018295 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA--- 220 (358)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~Il--s~GE---~lSa~Lla~~L~~~Gi~A--- 220 (358)
.+ . .. +++..+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 -----~~-~-----~~-------------------------~~~~l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~~~ 111 (314)
T 1e19_A 69 -----AT-Y-----GI-------------------------PAQPMDVAGAMSQGWIGYMI-QQALKNELRKRGMEKKVV 111 (314)
T ss_dssp -----HH-H-----CC-------------------------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCCEE
T ss_pred -----cc-C-----CC-------------------------ChhHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchhhh
Confidence 00 0 11 111222332 2343 55 555677899999987
Q ss_pred -----eEeeccce----------EEEeeC-------CC------------CCc-----eeeccchHHHHHHHhhchhcCC
Q 018295 221 -----RQYDAFDI----------GFITTD-------DF------------TNA-----DILEATYPAVAKRLHGDWITDL 261 (358)
Q Consensus 221 -----~~ld~~d~----------~iit~~-------~~------------~~a-----~i~~~~~~~i~~~l~~~ll~~~ 261 (358)
+.+++.|. .+++.+ ++ .+. .+...+.+.+. .+++.+
T Consensus 112 ~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~-----~lL~~g 186 (314)
T 1e19_A 112 TIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIK-----KLVERG 186 (314)
T ss_dssp EBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHH-----HHHHTT
T ss_pred hhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHH-----HHHHCC
Confidence 56666652 233210 01 111 02222333333 335789
Q ss_pred ceEEEcCCc----cccCCCCcEEeeCC---CcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHH
Q 018295 262 AIPIVTGFL----GKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334 (358)
Q Consensus 262 ~IpVv~Gfi----g~~~~~G~~ttlgR---gGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA 334 (358)
.|||++||. +.+ .+ . ++|+ +++|++|+.+|.+|+|++++|+|||||||++|| .|+++++++|+++|+
T Consensus 187 ~IpV~~Gg~giPi~~~-~d--~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~ 260 (314)
T 1e19_A 187 VIVIASGGGGVPVILE-DG--E-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEEL 260 (314)
T ss_dssp CEEECSGGGCEEEEEE-TT--E-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHH
T ss_pred CEEEEeCCCccCeEEC-CC--C-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHH
Confidence 999999853 333 12 2 4554 779999999999999999999999999999999 489999999999999
Q ss_pred HHHHHCCC---CcccHh
Q 018295 335 AELAYFGA---QVYIFE 348 (358)
Q Consensus 335 ~eLa~~Ga---kVLHP~ 348 (358)
.+++..|. ..++|+
T Consensus 261 ~~~~~~g~~~~GgM~~K 277 (314)
T 1e19_A 261 RKYYEEGHFKAGSMGPK 277 (314)
T ss_dssp HHHHHTTCSCTTTHHHH
T ss_pred HHHHhCCCcCCCChHHH
Confidence 99988653 345676
No 33
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.84 E-value=2.2e-21 Score=185.20 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCceeEeeccceEEEeeCCC-----CC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEe
Q 018295 208 IFAAYLNKIGVKARQYDAFDIGFITTDDF-----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT 281 (358)
Q Consensus 208 Lla~~L~~~Gi~A~~ld~~d~~iit~~~~-----~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~tt 281 (358)
.+.+.|++.|+++..+++.+.++++.+++ ++ +++...+.+.++.. ++++.|||++| ++.+ .+|+.++
T Consensus 118 ~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~l-----L~~g~IPVi~~-v~~~-~~G~~~~ 190 (279)
T 3l86_A 118 NLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEF-----LENRQIPILAS-LGYS-KEGDMLN 190 (279)
T ss_dssp HHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHH-----HHTTCEEEEES-EEEC-TTSCEEE
T ss_pred HHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHH-----HhCCcEEEECC-cEEC-CCCCEee
Confidence 35678999999999999999888888643 33 45655555555543 47889999999 8888 5899998
Q ss_pred eCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCC
Q 018295 282 LGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG 341 (358)
Q Consensus 282 lgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~G 341 (358)
++ +|++|+.+|.+|+|++++|||||||||+ ++++|++|+++|+.+++..|
T Consensus 191 i~---~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~ 240 (279)
T 3l86_A 191 IN---ADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTA 240 (279)
T ss_dssp CC---HHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTT
T ss_pred cC---HHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCC
Confidence 87 9999999999999999999999999994 47899999999999998754
No 34
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.82 E-value=1.7e-20 Score=181.21 Aligned_cols=194 Identities=20% Similarity=0.335 Sum_probs=140.5
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHH
Q 018295 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (358)
++.++|+||||+.+.+ .++++++.|... .+.++| ||++.|...+.+++
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~V-vVHGgG~~i~~~l~--------------------------- 96 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPI-VLHGTGPQVNGRLE--------------------------- 96 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEE-EEECCHHHHHHHHH---------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHH---------------------------
Confidence 5678999999976643 478888877643 244555 55555666665554
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC-
Q 018295 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (358)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~- 234 (358)
.++++++ +.+|++ ..++++.+.+ +.+| .+|..| ...|++.|++|+++++. +++.+
T Consensus 97 ----~~gi~~~-----------~~~G~R---vTd~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~gg---~~~a~~ 153 (307)
T 3zzh_A 97 ----AQGIEPD-----------YIDGIR---ITDEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITSG---VFTADY 153 (307)
T ss_dssp ----HTTCCCC-----------EETTEE---CBCHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECSS---SEEEEE
T ss_pred ----HcCCCcc-----------ccCCee---cCCHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcCC---cEEEEe
Confidence 2333331 233433 3456777766 5567 478776 46799999999999873 44543
Q ss_pred ----CCC-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecC
Q 018295 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (358)
Q Consensus 235 ----~~~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDV 309 (358)
+++ .+++...+.+.++..| +++.|||++|+ +.+ .+|++++++ +|.+|+.+|.+|+|++++|+|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~lL-----~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEASI-----KAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHHHH-----HHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHHHH-----HCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 233 3567666766666543 67899999996 776 479999888 99999999999999999999999
Q ss_pred CccccCCCCCCCCCcccCCcCHHH-HHHHHHC
Q 018295 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYF 340 (358)
Q Consensus 310 dGVytaDP~~v~~Ak~i~~Lsy~E-A~eLa~~ 340 (358)
||||++ |++++|++++++| +.+|...
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~ 250 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQ 250 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTS
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhC
Confidence 999986 5799999999976 5677654
No 35
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.79 E-value=2.5e-19 Score=181.54 Aligned_cols=193 Identities=21% Similarity=0.347 Sum_probs=140.0
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (358)
+.++|+|+||+.+.+ .++++++.|... .+.++ |||+++|...+.+++
T Consensus 48 ~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~-VvVHGgG~~i~~~l~---------------------------- 96 (464)
T 4ab7_A 48 QQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYP-IVLHGTGPQVNGRLE---------------------------- 96 (464)
T ss_dssp -CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCC-EEEECCCHHHHHHHH----------------------------
T ss_pred CceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeE-EEEECCcHHHHHHHH----------------------------
Confidence 578999999997753 477888777643 24455 456677877776654
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccceEEEeeC--
Q 018295 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (358)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~-- 234 (358)
.++++++ +.+|+++ .++.+++.+ +.+| .+|..| +..|+++|++|+++++. +++.+
T Consensus 97 ---~~gi~~~-----------f~~G~Rv---Td~~tl~vv~mv~~-~vn~~l-v~~L~~~G~~Avglsgg---~~~a~~~ 154 (464)
T 4ab7_A 97 ---AQGIEPD-----------YIDGIRI---TDEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITSG---VFTADYL 154 (464)
T ss_dssp ---HTTCCCC-----------EETTEEC---BCHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECSS---SEEEEES
T ss_pred ---HcCCCcc-----------ccCCeec---CCHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeEEECCC---cEEEEec
Confidence 2344331 2344433 345666665 4567 468775 56799999999999872 44543
Q ss_pred ---CCC-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCC
Q 018295 235 ---DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (358)
Q Consensus 235 ---~~~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVd 310 (358)
+++ .+++..++.+.+... +++|.|||++|+ |.+ .+|++++++ +|.+|+.+|.+|+|++++++||||
T Consensus 155 ~~~d~g~vG~I~~v~~~~I~~l-----L~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV~ 224 (464)
T 4ab7_A 155 DKDKYKLVGNIKSVTKEPIEAS-----IKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEKG 224 (464)
T ss_dssp CTTTTBSBEEEEEECCHHHHHH-----HHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESSC
T ss_pred CccccCCcCcccccCHHHHHHH-----HHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEeccc
Confidence 344 357766776666654 368899999995 777 479999998 999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccCCcCHHH-HHHHHHC
Q 018295 311 GVLTCDPNIHPHAKPVPYLTFDE-AAELAYF 340 (358)
Q Consensus 311 GVytaDP~~v~~Ak~i~~Lsy~E-A~eLa~~ 340 (358)
|||++ |++++|++|+++| +.+|...
T Consensus 225 GV~~~-----~~~~lI~~it~~e~~~~li~~ 250 (464)
T 4ab7_A 225 GIING-----STGEKISMINLDEEYDDLMKQ 250 (464)
T ss_dssp SEECT-----TTCCEECEEEHHHHHHHHHTC
T ss_pred ccccC-----CCCcCCcccCHHHHHHHHHhc
Confidence 99986 4789999999976 5667653
No 36
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.79 E-value=3.7e-19 Score=172.37 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=131.8
Q ss_pred CceEEEEeCccccC--CH--------HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHH
Q 018295 80 QLTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (358)
Q Consensus 80 ~~~~V~KFGGSSl~--s~--------e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l 148 (358)
++++|+||||+++. +. +.++++++.|.... .+..+|+||++|...+.+++...
T Consensus 4 ~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~---------------- 67 (316)
T 2e9y_A 4 GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFE---------------- 67 (316)
T ss_dssp CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH----------------
T ss_pred CCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcC----------------
Confidence 35799999999998 64 68888888887542 34557788988887776654211
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--HHhHH---HHHHHHHHHHHHHcCCce---
Q 018295 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGE---CMSTRIFAAYLNKIGVKA--- 220 (358)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I--ls~GE---~lSa~Lla~~L~~~Gi~A--- 220 (358)
..+. ..++...|.+ .+.|+ .++ ..+...|.+.|+++
T Consensus 68 ---------------~~~~--------------------~t~~~~l~~~~~~~~G~i~~~l~-~~l~~~l~~~g~~a~~~ 111 (316)
T 2e9y_A 68 ---------------ALPP--------------------ERPRQPLYIATAMTQAWIGLLLK-HSLEEELRRRGLNVLVP 111 (316)
T ss_dssp ---------------TSCT--------------------TSCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCCCC
T ss_pred ---------------CCCC--------------------CCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCCCcccc
Confidence 1100 0112223333 22333 466 46778899999998
Q ss_pred -----eEeeccce----------EEEee---------CCC---CC------------ceeeccchHHHHHHHhhchhcCC
Q 018295 221 -----RQYDAFDI----------GFITT---------DDF---TN------------ADILEATYPAVAKRLHGDWITDL 261 (358)
Q Consensus 221 -----~~ld~~d~----------~iit~---------~~~---~~------------a~i~~~~~~~i~~~l~~~ll~~~ 261 (358)
+.+++.|. .+++. ..| ++ ..+...+.+.+.. +++.+
T Consensus 112 ~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~~-----lL~~g 186 (316)
T 2e9y_A 112 VVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAE-----ASAES 186 (316)
T ss_dssp EECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHHH-----HHHHC
T ss_pred ceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHHH-----HHHCC
Confidence 67777773 12210 001 11 0121233333333 34678
Q ss_pred ceEEEcCCcc----ccCCCCc----EEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHH
Q 018295 262 AIPIVTGFLG----KAWRTCA----ITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333 (358)
Q Consensus 262 ~IpVv~Gfig----~~~~~G~----~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~E 333 (358)
.|||+.|+-| .+ ++|. ..+++ +|.+|+.+|.+|+|+.++|+|||||||+ ||+ .|++++|++|+++|
T Consensus 187 ~IpI~~g~~g~pv~~~-~~g~~~g~~~~id---~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e 260 (316)
T 2e9y_A 187 PAVVALGGGGVPVVER-PGGVLEPVEAVVD---KDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASE 260 (316)
T ss_dssp SEEEECGGGCEEEEEC-TTSCEEECSCCCC---HHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHH
T ss_pred CEEEEECCCCCCeeEC-CCCCeecceeeeC---HHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHH
Confidence 9999987543 34 3552 22334 9999999999999999999999999999 885 68999999999999
Q ss_pred HHHHHHCC
Q 018295 334 AAELAYFG 341 (358)
Q Consensus 334 A~eLa~~G 341 (358)
+.+++..|
T Consensus 261 ~~~~~~~g 268 (316)
T 2e9y_A 261 LKKYLREG 268 (316)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99998753
No 37
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.79 E-value=4.8e-19 Score=178.74 Aligned_cols=204 Identities=16% Similarity=0.093 Sum_probs=139.6
Q ss_pred CceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 018295 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (358)
Q Consensus 80 ~~~~V~KFGGSSl~s~e~i~~Va~iI~~~~-~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (358)
+.++|+||||+++.+++ +.++++.|.... .+..+|+||++|..++.+++.
T Consensus 43 ~~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~---------------------------- 93 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAA---------------------------- 93 (456)
T ss_dssp TCEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTT----------------------------
T ss_pred CCEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH----------------------------
Confidence 36799999999999866 778887776542 344567777777776665432
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCce----eEeeccceEEEee
Q 018295 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITT 233 (358)
Q Consensus 159 ~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A----~~ld~~d~~iit~ 233 (358)
++..+. +.+|+ +..++...+.+ .+.| .++..+ .+.|+ +|+++ +.+++.+.++++.
T Consensus 94 ---~~~~~~-----------~~~g~---r~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~ 153 (456)
T 3d2m_A 94 ---QGRTPH-----------YCRGL---RVTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTA 153 (456)
T ss_dssp ---TTCCCC-----------CGGGC---CCBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEE
T ss_pred ---CCCCCE-----------eeCCe---ecCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEE
Confidence 111110 11111 12234555554 3346 456655 55778 99998 8888888777776
Q ss_pred CCC--------CC-ceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEE
Q 018295 234 DDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (358)
Q Consensus 234 ~~~--------~~-a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~ 304 (358)
... +. +++...+.+.+.. +++.+.|||+.++ +.+ .+|++++++ +|.+|+.+|.+|+|+.++
T Consensus 154 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li 223 (456)
T 3d2m_A 154 RPIGVIDGTDMEYAGVIRKTDTAALRF-----QLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLV 223 (456)
T ss_dssp EECCEETTEECBTBEEEEEECHHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEE
T ss_pred EEcccccCcccCceeeEEEECHHHHHH-----HHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 433 21 2343444444443 3478999999985 666 479999887 999999999999999999
Q ss_pred EeecCCccccCCCCCCCCCcccCCcCHHHHHHHHHCCCCcccHh
Q 018295 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVYIFE 348 (358)
Q Consensus 305 i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa~~GakVLHP~ 348 (358)
|+|||||||++ ++++|++|+++|+.+++..|...+.|+
T Consensus 224 ~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~K 261 (456)
T 3d2m_A 224 YLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRL 261 (456)
T ss_dssp EEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHH
T ss_pred EEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHH
Confidence 99999999986 688999999999999988776556663
No 38
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.78 E-value=7.6e-19 Score=166.46 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEee
Q 018295 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 203 ~lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttl 282 (358)
.+|.. +...|+++|++++++++.++++.+.+ ...+.+.+... ++++.|||++||++.+ ..|++.++
T Consensus 98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~~l-----L~~g~ipVi~~~~~~~-~~g~~~~~ 163 (266)
T 3k4o_A 98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIKEM-----LKRNLVPVIHGDIVID-DKNGYRII 163 (266)
T ss_dssp HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHHHH-----HHTTCEEEEECEEEEE-SSSCEEEE
T ss_pred HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHHHH-----HHCCCEEEEeCCEEEc-CCCCeeee
Confidence 47777 46789999999999999998666532 11223334432 4778999999998887 46777666
Q ss_pred CCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHHHHHHHH
Q 018295 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA 338 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~EA~eLa 338 (358)
+ +|++|+.+|.+|+|+++++|||||||| +||++ +++++.+|+.++.
T Consensus 164 ~---~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~ 209 (266)
T 3k4o_A 164 S---GDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKIL 209 (266)
T ss_dssp C---HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHH
T ss_pred C---HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHH
Confidence 6 999999999999999999999999999 88865 5555544444443
No 39
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.76 E-value=1.6e-18 Score=175.75 Aligned_cols=196 Identities=12% Similarity=0.186 Sum_probs=137.8
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHH
Q 018295 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (358)
++.++|+||||+.+. +.++++++.|... .+.++|||++| |...+.+++
T Consensus 57 ~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGg-G~~i~~~l~--------------------------- 106 (460)
T 3s6g_A 57 QERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGG-GPQLDAALE--------------------------- 106 (460)
T ss_dssp GGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECC-HHHHHHHHH---------------------------
T ss_pred CCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECC-ChHHHHHHH---------------------------
Confidence 457899999998543 3578888887653 24577777655 444444433
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccce--EEEee
Q 018295 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT 233 (358)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~--~iit~ 233 (358)
.++++++ +.+|++++ +++..+.+ ..+| .+|..|++ .|++.|++|+++.+..+ ..++.
T Consensus 107 ----~~gi~~~-----------f~~G~RvT---d~~~l~vv~~~lg-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~ 166 (460)
T 3s6g_A 107 ----AADIPTE-----------RVDGLRVT---RDEAMPIIRDTLT-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDA 166 (460)
T ss_dssp ----HHSCCCC-----------CCSSSCCB---CTTTHHHHHHHHH-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCT
T ss_pred ----HcCCCcc-----------ccCCccCC---CHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecC
Confidence 1233321 23344333 33444544 3457 78988876 79999999999998432 11111
Q ss_pred CCCC-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 234 DDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 234 ~~~~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
.+++ .++|..++.+.+...| ++|.|||++++ |.+ .+|++++++ +|.+|+.+|.+|+|++++|+||||||
T Consensus 167 ~d~g~~G~I~~v~~~~i~~lL-----~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv 236 (460)
T 3s6g_A 167 DKLGRVGEPRHIHLDLVGSAA-----RAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGL 236 (460)
T ss_dssp TTTBSEEEEEEECCHHHHHHH-----HTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSC
T ss_pred cccCccCcceEEcHHHHHHHH-----HCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 2444 3677667766666543 68899999984 766 479999998 99999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHH-HHHHHHHC
Q 018295 313 LTCDPNIHPHAKPVPYLTFD-EAAELAYF 340 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~-EA~eLa~~ 340 (358)
|+. ++++|++|+.+ |+.+|+..
T Consensus 237 ~~~------~~~lI~~i~~~~e~~~l~~~ 259 (460)
T 3s6g_A 237 LDE------DGDILSSINLATDFGDLMQA 259 (460)
T ss_dssp BCT------TSSBCCEEEHHHHHHHHHHC
T ss_pred cCC------CCeecceeCcHHHHHHHHhc
Confidence 984 47889999996 88888764
No 40
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.76 E-value=6.9e-18 Score=162.93 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=66.6
Q ss_pred hhcCCceEEEcCCccccC----CCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCHH
Q 018295 257 WITDLAIPIVTGFLGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (358)
Q Consensus 257 ll~~~~IpVv~Gfig~~~----~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy~ 332 (358)
+++++.|||+.||.|... ..|+..+++ +|++|+.+|.+|+||.++|+|||||||+ || ..|+++++++++++
T Consensus 178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~---~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~ 252 (310)
T 2we5_A 178 LIKNDIITISCGGGGIPVVGQELKGVEAVID---KDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA 252 (310)
T ss_dssp HHHTTCEEECCGGGCEEEETTTTEECCCCCC---HHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred HHHCCCEEEEECCCCCCCcCCCCCCcEeecC---HHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence 357899999998754221 234444455 9999999999999999999999999999 88 48899999999999
Q ss_pred HHHHHHHCC
Q 018295 333 EAAELAYFG 341 (358)
Q Consensus 333 EA~eLa~~G 341 (358)
|+.+++..|
T Consensus 253 e~~~~~~~g 261 (310)
T 2we5_A 253 ELEEYKQAG 261 (310)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhCC
Confidence 999998754
No 41
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.67 E-value=4.4e-18 Score=172.73 Aligned_cols=196 Identities=17% Similarity=0.319 Sum_probs=133.9
Q ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHHhHHHHhcCCCccchHHHHHHHHHHHH
Q 018295 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (358)
Q Consensus 79 ~~~~~V~KFGGSSl~s~e~i~~Va~iI~~~--~~~~~vVVVSA~gg~Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (358)
.+.++|+||||+.+.+ .++++++.|... .+.++|||++| |..++.+++.
T Consensus 60 ~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGg-g~~i~~~l~~-------------------------- 110 (467)
T 3s6k_A 60 AKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGA-GPQLDAELSA-------------------------- 110 (467)
T ss_dssp STTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCC-CHHHHHHHHT--------------------------
T ss_pred CCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECC-ChHHHHHHHH--------------------------
Confidence 4578999999995553 467888777643 24566666655 5555555431
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHhHHHHHHHHHHHHHHHcCCceeEeeccce--EEEee
Q 018295 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT 233 (358)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~L~~ll~gi~~~~e~s~~~~d~I-ls~GE~lSa~Lla~~L~~~Gi~A~~ld~~d~--~iit~ 233 (358)
++++++ +.+|++ ..+++..+.+ +.+| .+|..|++ .|++.|++|+++.+..+ ..++.
T Consensus 111 -----~gi~~~-----------f~~G~R---vTd~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~~ 169 (467)
T 3s6k_A 111 -----AGIEKQ-----------TVNGLR---VTSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLNR 169 (467)
T ss_dssp -----TSCCCC-----------CCSSSC---CBCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSCS
T ss_pred -----cCCCcc-----------ccCCcc---CCCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEeccC
Confidence 233321 222322 2345666666 3567 78998877 79999999999987432 11122
Q ss_pred CCCC-CceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCcc
Q 018295 234 DDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (358)
Q Consensus 234 ~~~~-~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGV 312 (358)
.+++ .++|..++.+.++.. +++|.|||+++ +|.+ .+|++++++ +|.+|+.+|.+|+|++++|+||||||
T Consensus 170 ~d~g~~G~I~~v~~~~i~~l-----L~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv 239 (467)
T 3s6k_A 170 DTYGLVGEVKAVNLAPIEAS-----LQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGGL 239 (467)
T ss_dssp SSSBSBBCCCCBCCHHHHTH-----HHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCSC
T ss_pred cccCccceEEEEcHHHHHHH-----HHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccce
Confidence 2444 356666666655543 46789999995 4545 468888887 99999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCCcCHH-HHHHHHHC
Q 018295 313 LTCDPNIHPHAKPVPYLTFD-EAAELAYF 340 (358)
Q Consensus 313 ytaDP~~v~~Ak~i~~Lsy~-EA~eLa~~ 340 (358)
|+.| +++|++|+.. |+.+|...
T Consensus 240 ~~~~------~~lI~~i~~~~e~~~l~~~ 262 (467)
T 3s6k_A 240 LDAE------GKLIDSINLSTEYDHLMQQ 262 (467)
T ss_dssp CCSS------CCCCCCCCTTTTTHHHHTS
T ss_pred eCCC------CCCccccChHHHHHHHHhc
Confidence 9854 6678888875 66666553
No 42
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.51 E-value=5e-14 Score=137.30 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=61.9
Q ss_pred chhcCCceEEEcCCccc--cC----CCCcEEeeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCc
Q 018295 256 DWITDLAIPIVTGFLGK--AW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (358)
Q Consensus 256 ~ll~~~~IpVv~Gfig~--~~----~~G~~ttlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~L 329 (358)
.+++++.|||+.|.-+. .. ..|...+.+ .|++|+.||.+|+||.++|+|||||||+.+|+ |++++|+++
T Consensus 198 ~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid---~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~i 272 (332)
T 4axs_A 198 QNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVID---KDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTV 272 (332)
T ss_dssp HHHHTTCEEECCGGGCEEEEESSSCEEECSSCCC---HHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSC
T ss_pred HhhcCCeEEEecccCCCCccccCCcccCceeeec---hHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccC
Confidence 34567788776442110 00 123333444 89999999999999999999999999999886 789999999
Q ss_pred CHHHHHHHHHCC
Q 018295 330 TFDEAAELAYFG 341 (358)
Q Consensus 330 sy~EA~eLa~~G 341 (358)
|.+|+.++...|
T Consensus 273 t~~e~~~~~~~g 284 (332)
T 4axs_A 273 DVKALNNFINQD 284 (332)
T ss_dssp BHHHHHHHHHTT
T ss_pred CHHHHHHHHHCC
Confidence 999999998755
No 43
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.35 E-value=5.9e-12 Score=121.56 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=67.7
Q ss_pred hchhcCCceEEEcCCcccc--CCCCcEE-eeCCCcchHHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcccCCcCH
Q 018295 255 GDWITDLAIPIVTGFLGKA--WRTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (358)
Q Consensus 255 ~~ll~~~~IpVv~Gfig~~--~~~G~~t-tlgRgGSD~tAa~LA~aL~A~~l~i~TDVdGVytaDP~~v~~Ak~i~~Lsy 331 (358)
..+++++.|||+.|+-|.. .+++..+ +...+.+|++|+.+|.+|+|+.++|+|||||||+ ||+ .|++++|+++++
T Consensus 182 ~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it~ 259 (317)
T 3kzf_A 182 KTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIKL 259 (317)
T ss_dssp HHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEEH
T ss_pred HHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcCH
Confidence 3445789999998766641 0133333 2335559999999999999999999999999999 999 599999999999
Q ss_pred HHHHHHHHC
Q 018295 332 DEAAELAYF 340 (358)
Q Consensus 332 ~EA~eLa~~ 340 (358)
+|+.+++..
T Consensus 260 ~e~~~li~~ 268 (317)
T 3kzf_A 260 SEILALEKD 268 (317)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999999764
No 44
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=68.14 E-value=18 Score=31.35 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+..++..|++.|+....+. ++-+ +.+.+.+.+... .++..+.|++|-+|.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~-----iv~D-----------d~~~I~~~l~~a-~~~~DlVittGG~g~~~--------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGF-----VVMD-----------DLDEIGWAFRVA-LEVSDLVVSSGGLGPTF--------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EECS-----------CHHHHHHHHHHH-HHHCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCCc---------
Confidence 377788999999999865432 3322 134455555433 33457888888666542
Q ss_pred CCcchHHHHHHHHHcCCceEEEee
Q 018295 284 RGGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~A~~l~i~T 307 (358)
-|+|.-.++.+++.+ +.++-
T Consensus 77 ---~D~T~ea~a~~~~~~-l~~~~ 96 (172)
T 3kbq_A 77 ---DDMTVEGFAKCIGQD-LRIDE 96 (172)
T ss_dssp ---TCCHHHHHHHHHTCC-CEECH
T ss_pred ---ccchHHHHHHHcCCC-eeeCH
Confidence 599999999999954 44433
No 45
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=57.80 E-value=24 Score=30.08 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc-CCceEEEcCCccccCCCCcEEee
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~IpVv~Gfig~~~~~G~~ttl 282 (358)
-|+..++..|++.|+..... .++.+ +.+.+.+.+...+.+ ...+.|++|-.|.+.
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a~~~~~~DlVittGG~g~~~-------- 83 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDK-----AIVKE-----------NRYAIRAQVSAWIASDDVQVVLITGGTGLTE-------- 83 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHHHHSSSCCEEEEESCCSSST--------
T ss_pred ccHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC--------
Confidence 47778888999999876543 13322 134455555443222 256888988676542
Q ss_pred CCCcchHHHHHHHHHcC
Q 018295 283 GRGGSDLTATTIGKALG 299 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++.+++
T Consensus 84 ----~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 84 ----GDQAPEALLPLFD 96 (172)
T ss_dssp ----TCCHHHHHGGGCS
T ss_pred ----CCCHHHHHHHHhc
Confidence 4676666666654
No 46
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=50.17 E-value=41 Score=28.45 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc--CCceEEEcCCccccCCCCcEEe
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~--~~~IpVv~Gfig~~~~~G~~tt 281 (358)
-|+..+++.|++.|+..... +++.+ +.+.+.+.+... .+ ...+.|++|-.|.+.
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~------- 86 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD-----------DKESIQQAVLAG-YHKEDVDVVLTNGGTGITK------- 86 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS-----------SHHHHHHHHHHH-HTCTTCSEEEEECCCSSST-------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC-------
Confidence 47777888999999876542 23322 134566665543 34 457889988666542
Q ss_pred eCCCcchHHHHHHHHHcC
Q 018295 282 LGRGGSDLTATTIGKALG 299 (358)
Q Consensus 282 lgRgGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++.+++
T Consensus 87 -----~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 87 -----RDVTIEAVSALLD 99 (169)
T ss_dssp -----TCCHHHHHHTTCS
T ss_pred -----CCCcHHHHHHHcC
Confidence 4777777776653
No 47
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=49.91 E-value=48 Score=32.51 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+.++++.|++.|..+..+ +++.++ .+.+.+.+... +++..+.|++|-.+.+ .
T Consensus 209 N~~~L~~~l~~~G~~v~~~-----~iv~Dd-----------~~~i~~~l~~a-~~~~DlVittGG~s~g----~------ 261 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINL-----GIVGDN-----------PDDLLNALNEG-ISRADVIITSGGVSMG----E------ 261 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEE-----EEECSS-----------HHHHHHHHHHH-HHHCSEEEEESCCSSS----C------
T ss_pred chHHHHHHHHHCCCEEEEE-----eecCCC-----------HHHHHHHHHHH-HhcCCEEEEcCCCcCC----C------
Confidence 6778899999999886643 244331 34455555443 2335678888855543 2
Q ss_pred CcchHHHHHHHHHcCCceEEEee
Q 018295 285 GGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~~l~i~T 307 (358)
-|++-..++..++. ++.+|.
T Consensus 262 --~D~t~~al~~~lg~-~~~f~~ 281 (419)
T 2fts_A 262 --KDYLKQVLDIDLHA-QIHFGR 281 (419)
T ss_dssp --CHHHHHHHHTTTCC-EEEESE
T ss_pred --cccHHHHHHHHcCC-ceEEeE
Confidence 69999999888886 566664
No 48
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=49.81 E-value=30 Score=29.20 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc-CCceEEEcCCccccCCCCcEEeeC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
|+.++++.|++.|+..... .++.+ +.+.+.+.+...+.. +..+.|++|-.+.+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~--------- 76 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVPD-----------EPPMIKKVLRLWADREGLDLILTNGGTGLAP--------- 76 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEECS-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST---------
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcCC-----------CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC---------
Confidence 6777888999999765542 13322 134456665543222 457889988666542
Q ss_pred CCcchHHHHHHHHHcC
Q 018295 284 RGGSDLTATTIGKALG 299 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++.+++
T Consensus 77 ---~D~t~ea~~~~~~ 89 (164)
T 2is8_A 77 ---RDRTPEATRELLD 89 (164)
T ss_dssp ---TCCHHHHHHTTCS
T ss_pred ---CCChHHHHHHHhC
Confidence 5888888887654
No 49
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=45.30 E-value=51 Score=28.26 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcC--CceEEEcCCccccCCCCcEEee
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD--LAIPIVTGFLGKAWRTCAITTL 282 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~--~~IpVv~Gfig~~~~~G~~ttl 282 (358)
|+.++++.|++.|+....+ +++-+ +.+.+.+.+... +++ ..+.|++|-.+.+.
T Consensus 41 n~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a-~~~~~~DlVittGG~s~g~-------- 95 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGY-----SLVPD-----------DKIKILKAFTDA-LSIDEVDVIISTGGTGYSP-------- 95 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HTCTTCCEEEEESCCSSST--------
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCCC--------
Confidence 6777888899999876543 23322 134566665543 333 57888888565442
Q ss_pred CCCcchHHHHHHHHHcC
Q 018295 283 GRGGSDLTATTIGKALG 299 (358)
Q Consensus 283 gRgGSD~tAa~LA~aL~ 299 (358)
-|++.-.++..++
T Consensus 96 ----~D~t~eal~~~~~ 108 (178)
T 2pjk_A 96 ----TDITVETIRKLFD 108 (178)
T ss_dssp ----TCCHHHHHGGGCS
T ss_pred ----CcchHHHHHHHhc
Confidence 4777777777654
No 50
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=43.43 E-value=49 Score=28.82 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeC
Q 018295 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 204 lSa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
-|+.++++.|++.|+.+..+ +++.+ +.+.+.+.+...+.++..+.|++|-.+.+.
T Consensus 49 sn~~~L~~~L~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a~~~~~DlVIttGGts~g~--------- 103 (185)
T 3rfq_A 49 HSGPLVTELLTEAGFVVDGV-----VAVEA-----------DEVDIRNALNTAVIGGVDLVVSVGGTGVTP--------- 103 (185)
T ss_dssp SHHHHHHHHHHHTTEEEEEE-----EEECS-----------CHHHHHHHHHHHHHTTCSEEEEESCCSSST---------
T ss_pred cHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC---------
Confidence 37888899999999876543 13322 134466665543224567888888666542
Q ss_pred CCcchHHHHHHHHHcC
Q 018295 284 RGGSDLTATTIGKALG 299 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++..++
T Consensus 104 ---~D~t~eal~~l~~ 116 (185)
T 3rfq_A 104 ---RDVTPESTREILD 116 (185)
T ss_dssp ---TCCHHHHHHTTCS
T ss_pred ---cccHHHHHHHHhc
Confidence 4777777766543
No 51
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=41.06 E-value=41 Score=28.38 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=37.4
Q ss_pred HHHHHHHH----HHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEE
Q 018295 205 STRIFAAY----LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT 280 (358)
Q Consensus 205 Sa~Lla~~----L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~t 280 (358)
|+..+++. |++.|+....+ .++.+ +.+.+.+.+...+.....+.|++|-.|.+.
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a~~~~~DlVittGG~g~~~------ 83 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISE-----VVVPE-----------GYDTVVEAIATALKQGARFIITAGGTGIRA------ 83 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEE-----EEECS-----------SHHHHHHHHHHHHHTTCSEEEEESCCSSST------
T ss_pred HHHHHHHhHHhHHHHCCCEEeEE-----EEeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC------
Confidence 67778888 88888765432 23322 134566665543222357888988666542
Q ss_pred eeCCCcchHHHHHHHHHc
Q 018295 281 TLGRGGSDLTATTIGKAL 298 (358)
Q Consensus 281 tlgRgGSD~tAa~LA~aL 298 (358)
-|+|.-.++..+
T Consensus 84 ------~D~t~ea~~~~~ 95 (167)
T 2g2c_A 84 ------KNQTPEATASFI 95 (167)
T ss_dssp ------TCCHHHHHHTTC
T ss_pred ------CcChHHHHHHHh
Confidence 477777777654
No 52
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=39.41 E-value=70 Score=26.95 Aligned_cols=67 Identities=25% Similarity=0.285 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchh-cCCceEEEcCCccccCCCCcEEeeC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll-~~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
|+.+++..|++.|+.+... .++-++ .+.+.+.+...+. +...+.|++|-.|.+.
T Consensus 41 ng~~L~~~L~~~G~~v~~~-----~iV~Dd-----------~~~i~~al~~~~a~~~~DlVittGG~g~~~--------- 95 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGY-----SLVPDD-----------KIKILKAFTDALSIDEVDVIISTGGTGYSP--------- 95 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECSC-----------HHHHHHHHHHHHTCTTCCEEEEESCCSSST---------
T ss_pred hHHHHHHHHHHCCCEEEEE-----EEeCCC-----------HHHHHHHHHHHHhcCCCCEEEecCCcccCC---------
Confidence 6777888999999986643 133221 2345554433221 2346888888676542
Q ss_pred CCcchHHHHHHHHHcC
Q 018295 284 RGGSDLTATTIGKALG 299 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++..++
T Consensus 96 ---~D~t~ea~~~~~~ 108 (178)
T 3iwt_A 96 ---TDITVETIRKLFD 108 (178)
T ss_dssp ---TCCHHHHHGGGCS
T ss_pred ---CCchHHHHHHhhh
Confidence 4666666665543
No 53
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=39.29 E-value=50 Score=27.97 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+.++++.|++.|+....+ +++.+ + +.+.+.+...+.++..+.|++|-.+.+.
T Consensus 28 n~~~l~~~l~~~G~~v~~~-----~iv~D-----------d-~~i~~al~~a~~~~~DlVittGG~s~g~---------- 80 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQP-----EVVAD-----------G-SPVGEALRKAIDDDVDVILTSGGTGIAP---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCEECCC-----EEECS-----------S-HHHHHHHHHHHHTTCSEEEEESCCSSST----------
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeCC-----------H-HHHHHHHHHHHhCCCCEEEECCCCCCCC----------
Confidence 6778889999999875432 23322 2 3355555443222557888888565432
Q ss_pred CcchHHHHHHHHHcC
Q 018295 285 GGSDLTATTIGKALG 299 (358)
Q Consensus 285 gGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++..++
T Consensus 81 --~D~t~eal~~~~~ 93 (164)
T 3pzy_A 81 --TDSTPDQTVAVVD 93 (164)
T ss_dssp --TCCHHHHHHTTCS
T ss_pred --CccHHHHHHHHhc
Confidence 5888888877754
No 54
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=35.21 E-value=1.3e+02 Score=29.28 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+.++++.|++.|.....+ +++.++ .+.+.+.+... ++...+.|++|-.+.+ .
T Consensus 205 n~~~L~~~l~~~G~~v~~~-----~iv~Dd-----------~~~i~~al~~a-~~~~DlvittGG~s~g----~------ 257 (411)
T 1g8l_A 205 NRLAVHLMLEQLGCEVINL-----GIIRDD-----------PHALRAAFIEA-DSQADVVISSGGVSVG----E------ 257 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECSC-----------HHHHHHHHHHH-HHHCSEEEECSSSCSS----S------
T ss_pred chHHHHHHHHHCCCEEEEE-----EEeCCC-----------HHHHHHHHHHH-hhcCCEEEECCCCCCC----C------
Confidence 6778888999999876543 244321 34455555433 2345688888855543 2
Q ss_pred CcchHHHHHHHHHcCCceEEEee
Q 018295 285 GGSDLTATTIGKALGLQEIQVWK 307 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~~l~i~T 307 (358)
-|++-..++.. | ++.+|.
T Consensus 258 --~D~t~~al~~~-G--~i~f~~ 275 (411)
T 1g8l_A 258 --ADYTKTILEEL-G--EIAFWK 275 (411)
T ss_dssp --CSHHHHHHHHH-S--EEEEEE
T ss_pred --cccHHHHHHhc-C--cEEEEE
Confidence 59999988865 6 677774
No 55
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=35.03 E-value=1e+02 Score=26.14 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHHHH---HcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc-CCceEEEcCCccccCCCCcEE
Q 018295 205 STRIFAAYLN---KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAIT 280 (358)
Q Consensus 205 Sa~Lla~~L~---~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~IpVv~Gfig~~~~~G~~t 280 (358)
|+..+++.|+ +.|+.. .. .++.++ .+.+.+.+...+.+ ...+.|++|-.|.+.
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~-----~iv~Dd-----------~~~I~~~l~~~~~~~~~DlVittGG~g~g~------ 82 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EY-----RVIPDE-----------RDLIEKTLIELADEKGCSLILTTGGTGPAP------ 82 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EE-----EEECSC-----------HHHHHHHHHHHHHTSCCSEEEEESCCSSST------
T ss_pred hHHHHHHHHHHHHhCCCEE-EE-----EEcCCC-----------HHHHHHHHHHHHhcCCCCEEEECCCCCCCC------
Confidence 6667777777 888865 32 233221 34455555443221 457889988666542
Q ss_pred eeCCCcchHHHHHHHHHcC
Q 018295 281 TLGRGGSDLTATTIGKALG 299 (358)
Q Consensus 281 tlgRgGSD~tAa~LA~aL~ 299 (358)
-|+|.-.++.+++
T Consensus 83 ------~D~t~ea~~~~~~ 95 (178)
T 2pbq_A 83 ------RDVTPEATEAVCE 95 (178)
T ss_dssp ------TCCHHHHHHHHCS
T ss_pred ------CCchHHHHHHHhC
Confidence 4888888887764
No 56
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=33.68 E-value=1.2e+02 Score=25.35 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=26.2
Q ss_pred hHHHHHHHhhchh-cCCceEEEcCCccccCCCCcEEeeCCCcchHHHHHHHHHcC
Q 018295 246 YPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALG 299 (358)
Q Consensus 246 ~~~i~~~l~~~ll-~~~~IpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~LA~aL~ 299 (358)
.+.+.+.+...+. ++..+.|++|-.+.+. -|+|.-.++.+++
T Consensus 56 ~~~i~~~l~~~~~~~~~DlVittGG~g~g~------------~D~t~~a~~~~~~ 98 (167)
T 1uuy_A 56 VERIKDILQKWSDVDEMDLILTLGGTGFTP------------RDVTPEATKKVIE 98 (167)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEESCCSSST------------TCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCC------------CCchHHHHHHHhc
Confidence 3456666554322 2457888988665442 5888888887764
No 57
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=33.21 E-value=1.3e+02 Score=29.25 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhcCCceEEEcCCccccCCCCcEEeeCC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~IpVv~Gfig~~~~~G~~ttlgR 284 (358)
|+.++++.|++.|.....+ +++.++ .+.+.+.+... +++..+.|++|-.+.+ .
T Consensus 208 N~~~L~~~l~~~G~~v~~~-----~iv~Dd-----------~~~i~~~l~~a-~~~~DlVittGG~s~g----~------ 260 (402)
T 1uz5_A 208 NGRALCDAINELGGEGIFM-----GVARDD-----------KESLKALIEKA-VNVGDVVVISGGASGG----T------ 260 (402)
T ss_dssp HHHHHHHHHHHHTSEEEEE-----EEECSS-----------HHHHHHHHHHH-HHHCSEEEEECCC--------------
T ss_pred hHHHHHHHHHhCCCeEEEE-----EEeCCC-----------HHHHHHHHHHH-hhCCCEEEEcCCCCCC----C------
Confidence 7778888999999876543 244321 34455555443 2345677888855433 1
Q ss_pred CcchHHHHHHHHHcCCceEEEe
Q 018295 285 GGSDLTATTIGKALGLQEIQVW 306 (358)
Q Consensus 285 gGSD~tAa~LA~aL~A~~l~i~ 306 (358)
-|++-..++.. | ++.+|
T Consensus 261 --~D~t~~al~~~-G--~~~f~ 277 (402)
T 1uz5_A 261 --KDLTASVIEEL-G--EVKVH 277 (402)
T ss_dssp ---CHHHHHHHHH-S--EEEEE
T ss_pred --cccHHHHHHhh-C--CEEEe
Confidence 59999998876 6 78888
No 58
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=32.69 E-value=1.4e+02 Score=26.01 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc-CCceEEEcCCccccCCCCcEEeeC
Q 018295 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLG 283 (358)
Q Consensus 205 Sa~Lla~~L~~~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~IpVv~Gfig~~~~~G~~ttlg 283 (358)
|+.++++.|++.|....... ..++-++ .+.+.+.+...+.. ...+.|++|-.|.+.
T Consensus 24 n~~~L~~~L~~~G~~~~v~~---~~iV~Dd-----------~~~I~~al~~a~~~~~~DlVitTGGtg~g~--------- 80 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFELE---TRLIPDE-----------QAIIEQTLCELVDEMSCHLVLTTGGTGPAR--------- 80 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEEE---EEEEESC-----------HHHHHHHHHHHHHTSCCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHcCCCCceEE---EEEeCCC-----------HHHHHHHHHHHHhcCCCCEEEECCCCCCCC---------
Confidence 77788999999998721111 2233321 34456655543322 456889988666542
Q ss_pred CCcchHHHHHHHHHcC
Q 018295 284 RGGSDLTATTIGKALG 299 (358)
Q Consensus 284 RgGSD~tAa~LA~aL~ 299 (358)
-|+|--.++..++
T Consensus 81 ---~D~T~ea~~~~~~ 93 (195)
T 1di6_A 81 ---RDVTPDATLAVAD 93 (195)
T ss_dssp ---TCCHHHHHHHTCS
T ss_pred ---CccHHHHHHHHhc
Confidence 4777777766643
No 59
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=32.63 E-value=1.3e+02 Score=25.97 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHHHHHHHHH---cCCceeEeeccceEEEeeCCCCCceeeccchHHHHHHHhhchhc-CCceEEEcCCccccCCCCcEE
Q 018295 205 STRIFAAYLNK---IGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAIT 280 (358)
Q Consensus 205 Sa~Lla~~L~~---~Gi~A~~ld~~d~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~IpVv~Gfig~~~~~G~~t 280 (358)
|+.++++.|++ .|+..... +++.+ +.+.+.+.+...+.+ ...+.|++|-.+.+.
T Consensus 35 n~~~L~~~L~~~~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a~~~~~~DlVIttGGtg~g~------ 92 (189)
T 1jlj_A 35 SGINLKDLVQDPSLLGGTISAY-----KIVPD-----------EIEEIKETLIDWCDEKELNLILTTGGTGFAP------ 92 (189)
T ss_dssp HHHHHHHHHHCTTTTCCEEEEE-----EEECS-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST------
T ss_pred HHHHHHHHHhchhcCCcEEEEE-----EEeCC-----------CHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC------
Confidence 67778888887 78765532 13322 134456655543221 456888988665542
Q ss_pred eeCCCcchHHHHHHHHHc
Q 018295 281 TLGRGGSDLTATTIGKAL 298 (358)
Q Consensus 281 tlgRgGSD~tAa~LA~aL 298 (358)
-|+|.-.++..+
T Consensus 93 ------~D~t~eal~~~~ 104 (189)
T 1jlj_A 93 ------RDVTPEATKEVI 104 (189)
T ss_dssp ------TCCHHHHHHHHC
T ss_pred ------cccHHHHHHHHh
Confidence 588888887765
Done!