Query 018298
Match_columns 358
No_of_seqs 205 out of 2030
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.6E-58 8.7E-63 418.8 24.6 289 57-351 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 5.2E-58 1.8E-62 417.7 22.1 279 62-353 3-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 3.7E-37 1.3E-41 279.4 20.1 188 166-353 6-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.6E-36 5.4E-41 275.9 15.7 183 170-354 4-195 (303)
5 3tgu_G UQCRQ, mitochondrial ub 28.2 39 0.0013 23.1 2.5 35 318-352 33-67 (81)
6 4b19_A PEPA1; toxin, toxin apo 22.4 23 0.00079 19.0 0.4 24 262-285 3-26 (30)
7 3vjj_A P9-1; 3.00A {Rice black 21.0 57 0.002 27.8 2.7 35 274-318 273-307 (368)
8 2acm_A Mucin-1; auto-catalytic 19.9 39 0.0013 21.4 1.1 20 103-122 40-59 (66)
9 1pp9_G Ubiquinol-cytochrome C 18.6 77 0.0026 21.6 2.5 35 317-351 32-66 (81)
10 3tgu_G UQCRQ, mitochondrial ub 16.9 95 0.0033 21.1 2.6 38 219-256 33-70 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.6e-58 Score=418.76 Aligned_cols=289 Identities=28% Similarity=0.505 Sum_probs=246.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhcCCccc-ccccCCccHHHHHHHHHhhhccceecccchHhhhhhccc
Q 018298 57 QIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD-LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPY 135 (358)
Q Consensus 57 ~~~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~ 135 (358)
..+.+.++++|++||+++.++++|+|++|+|+|++..... .....++++++++++|+++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3567889999999999999999999999999999864321 123367899999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHhhhc----ccccCCHHHHH
Q 018298 136 SSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSF 211 (358)
Q Consensus 136 ~~~~f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~d~vktr~q~~~~----~~~~~~~~~~~ 211 (358)
.+++|++||.+|+.+..... .......+....+++|++||++++++++|+|++|+|+|++.. ...|+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999995433211 111112245678899999999999999999999999999843 34689999999
Q ss_pred HHHHhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCCCChhHHhHhhhHHHHHHhhccccHHHHHHHHH
Q 018298 212 QTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQ 291 (358)
Q Consensus 212 ~~i~~~~G~~gly~G~~~~~~r~~~~~~~~~~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvktr~q 291 (358)
++|+++||++|||||+.|++++.+|+.+++|.+||.+|+.+.+. .+.+....+++|++||++++++++|+||||+|||
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999999999999987543 2345778899999999999999999999999999
Q ss_pred hccCCCCcccccCCHHHHHHHHHHhhchhhcccchHHHHhhhhhchhhHHHHHHHHHHHh
Q 018298 292 LEGAGGRARVYNNGLLGTFRYIIQSEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 351 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~~~~~~i~~~~ye~~~~~l 351 (358)
.+.........|.+++||+++|+++||++|||||+.|+++|. +.+++.|.+||.+|+++
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 876543333456999999999999999999999999999996 56789999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.2e-58 Score=417.69 Aligned_cols=279 Identities=22% Similarity=0.380 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHhcCCccc----ccccCCccHHHHHHHHHhhhccceecccchHhhhhhccccc
Q 018298 62 QQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD----LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSS 137 (358)
Q Consensus 62 ~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~ 137 (358)
.++++|++||+++.+++||+|++|+|+|++..... ....+++++++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999865321 11236789999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhhccCCCCCCcccchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHhhhc---ccccCCHHHHHHHH
Q 018298 138 VNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---AIYYKGIWHSFQTI 214 (358)
Q Consensus 138 ~~f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~d~vktr~q~~~~---~~~~~~~~~~~~~i 214 (358)
++|++||.+|+.+.+.. + ..+....+++|++||+++.++++|+|++|+|+|++.. ...|+++++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~----~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS----E----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSCCC----S----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC----c----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 99999999999875321 1 1356778999999999999999999999999999853 34689999999999
Q ss_pred HhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCCCChhHHhHhhhHHHHHHhhccccHHHHHHHHHhcc
Q 018298 215 CREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEG 294 (358)
Q Consensus 215 ~~~~G~~gly~G~~~~~~r~~~~~~~~~~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvktr~q~~~ 294 (358)
+++||++|||||+.|++++.+|+.+++|.+||.+|+.+.+....+.+....+++|++||++++++++|+||||+|||.+.
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998765545566778999999999999999999999999999876
Q ss_pred CCCCcccccCCHHHHHHHHHHhhchhhcccchHHHHhhhhhchhhHHHHHHHHHHHhhc
Q 018298 295 AGGRARVYNNGLLGTFRYIIQSEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 353 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~ 353 (358)
.. .|.+++||+++|+++||++|||||+.|+++|.+|.+++.|.+||.+|+++.+
T Consensus 235 ~~-----~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 235 LG-----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SS-----SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cc-----ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 42 3589999999999999999999999999999999999999999999988764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.7e-37 Score=279.40 Aligned_cols=188 Identities=27% Similarity=0.426 Sum_probs=165.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhccHHHHHHHHHhhhc------ccccCCHHHHHHHHHhhhcccccccchhhhhhhhhhhhh
Q 018298 166 NLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ------AIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIA 239 (358)
Q Consensus 166 ~~~~~~~ag~~ag~~~~~v~~P~d~vktr~q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~ 239 (358)
+....+++|++||+++.++++|+|++|+|+|++.. ...|+++++++++|+++||++|||||+.+.+++.+|+.+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999853 346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-cCCCCC---ChhHHhHhhhHHHHHHhhccccHHHHHHHHHhccCCCCcccccCCHHHHHHHHHH
Q 018298 240 ISFSVYESLRSFWQS-YRPNDP---TVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQ 315 (358)
Q Consensus 240 ~~~~~ye~~k~~l~~-~~~~~~---~~~~~~~~g~~ag~~~~~~t~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~ 315 (358)
++|.+||.+|+.+.. .+..+. .....+++|++||++++++++|+|+||+|||.+.........|.++++|+++|++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 999999999996433 222221 2356899999999999999999999999999986543333456899999999999
Q ss_pred hhchhhcccchHHHHhhhhhchhhHHHHHHHHHHHhhc
Q 018298 316 SEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 353 (358)
Q Consensus 316 ~eG~~~lyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~ 353 (358)
+||+++||||+.|+++|.+|.+++.|.+||.+|+++.+
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998864
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.6e-36 Score=275.93 Aligned_cols=183 Identities=27% Similarity=0.438 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhhhhhhccHHHHHHHHHhhhc---------ccccCCHHHHHHHHHhhhcccccccchhhhhhhhhhhhhH
Q 018298 170 HFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---------AIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAI 240 (358)
Q Consensus 170 ~~~ag~~ag~~~~~v~~P~d~vktr~q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~~ 240 (358)
.+++|++||+++.++++|+|++|+|+|++.. ...|+++++++++|+++||+++||||+.+.+++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999998754 2468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCChhHHhHhhhHHHHHHhhccccHHHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhchh
Q 018298 241 SFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLR 320 (358)
Q Consensus 241 ~~~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 320 (358)
+|.+||.+|+.+.+... ..+....+++|++||++++++++|+|+||+|||.+...+. ...|.++++|+++|+++||++
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~-~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG-GRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCC-SSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCC-CCCCCCHHHHHHHHHHhcChh
Confidence 99999999999876422 4567889999999999999999999999999999875422 224589999999999999999
Q ss_pred hcccchHHHHhhhhhchhhHHHHHHHHHHHhhcC
Q 018298 321 GLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 354 (358)
Q Consensus 321 ~lyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~~ 354 (358)
+||||+.|+++|.+|.+++.|.+||.+|+++.+.
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998764
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=28.21 E-value=39 Score=23.09 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.0
Q ss_pred chhhcccchHHHHhhhhhchhhHHHHHHHHHHHhh
Q 018298 318 GLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLS 352 (358)
Q Consensus 318 G~~~lyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~ 352 (358)
|+-..+|-+.-.+++++|..++...+|++.++.-.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 55566666777788999999999999998887653
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=22.43 E-value=23 Score=19.04 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=18.6
Q ss_pred hhHHhHhhhHHHHHHhhccccHHH
Q 018298 262 VMVSLACGSLSGIASSTATFPIDL 285 (358)
Q Consensus 262 ~~~~~~~g~~ag~~~~~~t~Pldv 285 (358)
.+.++++-+++|++-++++|.|+.
T Consensus 3 ifv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 3 IFVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GGTSSTTTTHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHHHHHh
Confidence 345667788889999999988864
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=21.00 E-value=57 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHhhccccHHHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhc
Q 018298 274 IASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEG 318 (358)
Q Consensus 274 ~~~~~~t~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG 318 (358)
.++++=.||||.+|-.++.- -+....+++.++++|
T Consensus 273 qLaTFdnypfdllRfqL~Sl----------istp~~I~e~i~K~G 307 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL----------ISTPALIREKIAKEG 307 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC----------CCCCHHHHHHHHHSC
T ss_pred eeecCCCCCHHHHHHHhhhh----------ccChHHHHHHHHhcC
Confidence 45678899999998866543 334467888888886
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=19.92 E-value=39 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHhhhccceec
Q 018298 103 PSILREASRIANEEGFRAFW 122 (358)
Q Consensus 103 ~~~~~~~~~i~~~~G~~gly 122 (358)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788889999999999986
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=18.55 E-value=77 Score=21.59 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=29.1
Q ss_pred hchhhcccchHHHHhhhhhchhhHHHHHHHHHHHh
Q 018298 317 EGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 351 (358)
Q Consensus 317 eG~~~lyrG~~~~~~r~~~~~~i~~~~ye~~~~~l 351 (358)
.|+-..+|-+.-.++.++|..+++..+|++.++..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 46667777788888899999999999999888765
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.90 E-value=95 Score=21.12 Aligned_cols=38 Identities=8% Similarity=0.280 Sum_probs=28.3
Q ss_pred cccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhccC
Q 018298 219 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYR 256 (358)
Q Consensus 219 G~~gly~G~~~~~~r~~~~~~~~~~~ye~~k~~l~~~~ 256 (358)
|+...+|-+...++..+|..++.+.+|+..++..+...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555667788889999999999999988765443
Done!