BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018299
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 162/335 (48%), Gaps = 41/335 (12%)
Query: 19 DGN---GNGANR----NYPLYWCYQCHRAVRISSTNPS-EIACPRCSGHFVSEIEISRPR 70
DGN G GAN N P ++CYQC+R V ++ + PS + CP C+ F+ E + P
Sbjct: 4 DGNVTGGGGANTVGVTNKP-FFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPN 62
Query: 71 LVVDFTAFDPSPEARLLEALSLILDPPIRRFDHGLFDDQEEPTQARRRSWFRRRNVNIDQ 130
F +P+P + L L L P LF T + N ++
Sbjct: 63 QGSGF--LNPNPNSIPFHDLFLTLSDPFASLLPLLFPSSSS-TTTSSSASIDPNNPSLSG 119
Query: 131 EPGIGRSNVHRRPRRNRSFDGNTNEETDALPRPRTWIILRHAEPPNPLEPILRPGQNPLP 190
GR + +FD T + + + NP + R LP
Sbjct: 120 PTRSGRGDPF-------AFDPFTFIQNHLNDLRSSGAQIEFVIQNNPSDQGFR-----LP 167
Query: 191 PGVNPRDYFLGQGMQQLIEEITQND--RPGPPPVPEAAIQAIPTVKIMESHLAND-TTCP 247
N DYF+G G++QLI+++ +ND R G PP ++AI+A+P V I +S+L ++ C
Sbjct: 168 --ANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCA 225
Query: 248 VCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS------------SA 295
VC ++F+ G EA+++ CKH+YH +C++PWL LHNSCPVCRHE+P
Sbjct: 226 VCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGT 285
Query: 296 SSSHDVDSDDEHGDGARRRCLRLRQLAFLWPFRSR 330
S +D D+ + DG R R +++ WPF++R
Sbjct: 286 SGGNDGDNSGQRSDGDNRTVERSFRISLPWPFQAR 320
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 45/293 (15%)
Query: 13 ANDANGDGNGNGANRNYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIEISRPRLV 72
++ N G+ A +++CYQC++ V IS ++ ++ CP C+ F+ E E P
Sbjct: 2 SSGVNSTGSAAAAPEVDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQS 61
Query: 73 VDFT-----AFDP--SPEARLLEAL--SLILDPPIRRFDHGLFDDQEEPTQARRRSWFRR 123
++F +F P P + LL + S P F LF +P QAR +
Sbjct: 62 LNFNPNSSDSFFPMADPFSTLLPLIFGSSAAAPSGMDF-MSLFGPSMQP-QARST----Q 115
Query: 124 RNVNIDQEPGIGRSNVHRRPRRNRSFDGNTNEETDALPRPRTWIILRH-AEPPNPLEPIL 182
+N D H + R+ T+ E ++I H ++P N +
Sbjct: 116 QNPQSDAFDPFTFLQNHLQTLRS----SGTHFE---------FVIENHPSDPGNRM---- 158
Query: 183 RPGQNPLPPGVNPRDYFLGQGMQQLIEEITQND--RPGPPPVPEAAIQAIPTVKIMESHL 240
PG N DYF G G++QLI+++ +ND R G PP ++AI A+PTVK+ + L
Sbjct: 159 --------PG-NFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDML 209
Query: 241 ANDTT-CPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292
++ C VC +EF+ G + +++ CKH++H +C++PWL LHNSCPVCR E+P
Sbjct: 210 KSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 121/283 (42%), Gaps = 46/283 (16%)
Query: 32 YWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIEISRPRLVVDFTAFDPS---PEARLLE 88
Y+C+ C I P E CPRC F+ E+ +R P LE
Sbjct: 11 YFCHSC--TAEIIPRLP-EYTCPRCDSGFIEELPETRNSENNSSNNSGTDQNRPSFENLE 67
Query: 89 ALSLILDPPIRRFDHGLFDDQEEPTQARRRSWFRRRNVNIDQEPGIGRSNVHRRPRRNRS 148
+ L + G+F N +D P G S PR S
Sbjct: 68 SAQFTLPSGYGQVTFGIF------------------NEGLDF-PIFGTSGPVEEPRDGES 108
Query: 149 FDGNTNEETDALPRPRTWIILRHAEPPN----PLEPILRPGQNPL------------PPG 192
+ + + +PR + R A N LE I++ N + P G
Sbjct: 109 RREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWG 168
Query: 193 V---NPRDYFLG-QGMQQLIEEI-TQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCP 247
V NP DY G G+ +I ++ Q + GPPP IQA+PT++I E H+ + CP
Sbjct: 169 VLHSNPMDYAWGANGLDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECP 228
Query: 248 VCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
VCKE++ VG R+L C H++H++CI+PWL H++CPVCR +
Sbjct: 229 VCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 128/285 (44%), Gaps = 46/285 (16%)
Query: 32 YWCYQCHRAVRISSTNPSEIACPRCSGHFVSEI-EISRPRLVVDFTAFDPSPEARL---- 86
Y+C+ C +V I P I CPRC F+ E+ E +R + P+ + R
Sbjct: 11 YFCHCC--SVEIVPRLPDYI-CPRCESGFIEELPEETRNTENGSAPSTAPTDQNRQPFEN 67
Query: 87 LEALSLILDPPIRRFDHGLFDDQEEPTQARRRSWFRRRNVNIDQEPGIGRSNVHRRPRRN 146
++ L +F G+FDD E I P +++ R P
Sbjct: 68 VDQHLFTLPQGYSQFAFGIFDDSFE----------------IPTFPPGAQADDGRDPESR 111
Query: 147 RSFDGNTNEETDALPRPRTWIILRHA----EPPNPLEPILRPGQNPL------------P 190
R + + A +PR + R A E LE I++ N + P
Sbjct: 112 REREHQSRHRYGAR-QPRARLTARRATGRHEGVPTLEGIIQQLVNGIISPAAVPSLGLGP 170
Query: 191 PGV---NPRDYFLG-QGMQQLIEEI-TQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTT 245
GV NP DY G G+ +I ++ Q + GPPP + IQA+PTV + E H+ +
Sbjct: 171 WGVLHSNPMDYAWGANGLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLE 230
Query: 246 CPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
CPVCKE++ +G R+L C H++H CIVPWL H+SCPVCR +
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 129/283 (45%), Gaps = 44/283 (15%)
Query: 32 YWCYQCHRAVRISSTNPSEIACPRCSGHFVSEI-EISRPRLVVDFTAFDPSPEAR----L 86
Y+C+ C +V I P I CPRC F+ E+ E +R + P+ ++R
Sbjct: 11 YFCHCC--SVEIVPRLPDYI-CPRCESGFIEELPEETRSTENGSAPSTAPTDQSRPPLEH 67
Query: 87 LEALSLILDPPIRRFDHGLFDDQEEPTQARRRSWFRRRNVNIDQEPGIGRSNVHRRPRRN 146
++ L +F G+FDD E I P +++ R P
Sbjct: 68 VDQHLFTLPQGYGQFAFGIFDDSFE----------------IPTFPPGAQADDGRDPESR 111
Query: 147 RSFDGNTNEETDALPRPRTWIILRHA----EPPNPLEPILRPGQNPL----------PPG 192
R D + A +PR + R A E LE I++ N + P G
Sbjct: 112 RERDHPSRHRYGAR-QPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWG 170
Query: 193 V---NPRDYFLG-QGMQQLIEEI-TQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCP 247
V NP DY G G+ +I ++ Q + GPPP + IQA+PTV + E H+ + CP
Sbjct: 171 VLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECP 230
Query: 248 VCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
VCK+++ +G R+L C H++H CIVPWL H+SCPVCR +
Sbjct: 231 VCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 194 NPRDYFLG-QGMQQLIEEI-TQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKE 251
NP DY G G+ +I ++ Q + GPPP IQA+PT++I E H+ CPVCKE
Sbjct: 174 NPMDYAWGANGLDTIITQLLNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKE 233
Query: 252 EFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
++ VG R+L C H++H++CI+PWL H++CPVCR +
Sbjct: 234 DYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 194 NPRDYFLG-QGMQQLIEEI-TQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKE 251
NP DY G G+ +I ++ Q + GPPP IQA+PT++I E H+ + CPVCKE
Sbjct: 174 NPMDYAWGANGLDTIITQLLNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKE 233
Query: 252 EFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
++ VG R+L C H++H++CI+PWL H++CPVCR +
Sbjct: 234 DYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 194 NPRDYFLG-QGMQQLIEEI-TQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKE 251
NP DY G G+ +I ++ Q + GPPP + IQA+PTV + E H+ + CPVCK+
Sbjct: 178 NPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKD 237
Query: 252 EFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
++ +G R+L C H++H CIVPWL H+SCPVCR +
Sbjct: 238 DYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 194 NPRDYFLGQ-GMQQLIEEIT-QNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKE 251
NP DY GQ G+ ++ ++ Q + GPPP + I ++PTV + + + CPVCKE
Sbjct: 174 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKE 233
Query: 252 EFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
++ V E R+L C H +HS CIVPWL LH++CPVCR +
Sbjct: 234 DYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 194 NPRDYFLGQ-GMQQLIEEIT-QNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKE 251
NP DY GQ G+ ++ ++ Q + GPPP + I ++PTV + + + CPVCKE
Sbjct: 175 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCKE 234
Query: 252 EFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
++ V + R+L C H +HS CIVPWL LH++CPVCR +
Sbjct: 235 DYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 210 EITQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYH 269
+++ D+ PPP +A +Q++P V I CPVC EF+ RE+ CKH++H
Sbjct: 43 DLSDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFH 102
Query: 270 SECIVPWLRLHNSCPVCRHEVPVSSASSSHDVDSDDEHGDGARRR 314
+ CI+PWL NSCP+CR E+P +A D ++ D RRR
Sbjct: 103 TGCILPWLNKTNSCPLCRLELPTDNA------DYEEFKKDKERRR 141
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 210 EITQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYH 269
+ T+ D+ PPP + ++++P V + CPVC EF+ G R+L C+H++H
Sbjct: 43 DFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFH 102
Query: 270 SECIVPWLRLHNSCPVCRHEVPVSS 294
S CI+PWL NSCP+CRHE+P S
Sbjct: 103 SSCILPWLGKTNSCPLCRHELPTDS 127
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 210 EITQNDRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYH 269
+ T+ D+ PPP + ++++P V + CPVC EF+ G R+L C+H++H
Sbjct: 43 DFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFH 102
Query: 270 SECIVPWLRLHNSCPVCRHEVPVSSASSSHDVDSDDEHGDGARRR 314
S CI+PWL NSCP+CRHE+P S D ++ + ARR+
Sbjct: 103 SACILPWLGKTNSCPLCRHELPTDSP------DYEEFKQEKARRQ 141
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 219 PPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR 278
PPP +A ++++P I S D CPVC EF+ E+ C H++HS CI+PWL
Sbjct: 63 PPPAAKAVVESLPRTVI--SSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLS 120
Query: 279 LHNSCPVCRHEVPVSSASSSHDVDSDDEH-GDGARRR 314
NSCP+CRHE+P D DS +EH D ARR+
Sbjct: 121 KTNSCPLCRHELPT-------DDDSYEEHKKDKARRQ 150
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 44/300 (14%)
Query: 32 YWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIE-----ISRPR----LVVDFTAFDPSP 82
+WCY C++ V + + + + C C+ FV I+ S P L D D S
Sbjct: 15 HWCYHCNKRVVVETLD-DFVVCCECNKGFVESIQPTPAAYSSPAPPQPLSPDLNVEDSSI 73
Query: 83 EARLLEALSLILDPPIRR-----FDHGLFDDQEEPTQARRRSWFRRRNV----------- 126
+ L+ L L+ P +R D ++D + R+
Sbjct: 74 GSHFLQMLRLLAHAPSQRSPPRHLDVLSYEDDFFRLELNSRNEIDDDEDEDEDDGDEEEE 133
Query: 127 ----NIDQEPGIGRSNVHRRPRRNRSFDGNTNEETDALPRPRTWIILRHAEPPNPLEPIL 182
N+ + RR RNR F T + R W + N +E +
Sbjct: 134 DEEENLTVNDEEDEEDDLRR--RNR-FPLTTTQSRTGRNRILDWAEILMGIEDNSIEFRM 190
Query: 183 RPGQNPLPPGVNPRDYFL-GQGMQQLIEEITQNDRPG------PPPVPEAAIQAIPTVKI 235
+ NP DY G + L++ + + D G PP ++AI+A+ T ++
Sbjct: 191 ESDRY----AGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEV 246
Query: 236 MESHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSA 295
S C VCK+ +G ++L C H YH +CIVPWL NSCPVCR ++ A
Sbjct: 247 SSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDA 306
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 200 LGQGMQQLIEEITQNDRP-GPPPVPEAAIQAIPTVKIMESHLAN---DTTCPVCKEEFKV 255
L G+ +I +I + P PP + ++ +P + E L + C +CKE +
Sbjct: 180 LINGLDMIIPDILDDGGPPRAPPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVI 239
Query: 256 GGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292
G + +EL CKH +H C+ PWL HNSCP+CRHE+P
Sbjct: 240 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPT 276
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 219 PPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR 278
PPP +A ++++P I S + CPVC EF+ E+ C H++HS CI+PWL
Sbjct: 63 PPPAAKAVVESLPRTVIRSS--KAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLS 120
Query: 279 LHNSCPVCRHEVPVSSASSSHDVDSDDEH-GDGARRR 314
NSCP+CRHE+P D DS +EH D ARR+
Sbjct: 121 KTNSCPLCRHELPT-------DDDSYEEHKKDKARRQ 150
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 194 NPRDYFLG-QGMQQLIEEITQNDRP--GPPPVPEAAIQAIPTVKIMESHLANDTTCPVCK 250
NP DY G +G+ +I ++ + + P P PE I + K + + + C +C
Sbjct: 341 NPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICM 400
Query: 251 EEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV-PVSSASSSHDVDSDDEH 307
E FK+ + +L CKH +H CI PWLR++ +C +CR V P S ++ DS + H
Sbjct: 401 EMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSANGH 458
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 215 DRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIV 274
D PPP + A++ +P I S + CPVC EF+ A E+ C H++HS CI+
Sbjct: 47 DHHLPPPAAKTAVENLPRTVIRGSQ--AELKCPVCLLEFEEEETAIEMPCHHLFHSNCIL 104
Query: 275 PWLRLHNSCPVCRHEVPVSSASSSHDVDSDDEHG-DGARRR 314
PWL NSCP+CRHE+P D D+ +EH D AR++
Sbjct: 105 PWLSKTNSCPLCRHELPT-------DDDTYEEHKRDKARKQ 138
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 222 VPEA---AIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR 278
VPEA AI +P +I++S D C VCKE + G + R L CKH +H ECI+ WL+
Sbjct: 43 VPEASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLK 102
Query: 279 LHNSCPVCRHEV 290
NSCP+CR+E+
Sbjct: 103 KTNSCPLCRYEL 114
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 215 DRPGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIV 274
D PPP + ++ +P I S + CPVC EF+ A E+ C H++HS CI+
Sbjct: 47 DHHLPPPAAKTVVENLPRTVIRGSQ--AELKCPVCLLEFEEEETAIEMPCHHLFHSSCIL 104
Query: 275 PWLRLHNSCPVCRHEVPVSSASSSHDVDSDDEH-GDGARRR 314
PWL NSCP+CR+E+P D D+ +EH D AR++
Sbjct: 105 PWLSKTNSCPLCRYELPT-------DDDTYEEHRRDKARKQ 138
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSASSSHDV 301
D+ C VC EF++ E E+ CKHI+H +CI WL HN+CP+CR V +SS +S V
Sbjct: 102 DSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISSTKTS--V 159
Query: 302 DSDDEHGDG 310
D D++H D
Sbjct: 160 DDDNDHPDS 168
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 200 LGQGMQQLI---EEITQNDRPGPPPVPEAAIQAIPTVKIMESH--LANDTTCPVCKEEFK 254
L Q M+ + E + + PP + +I A+P + + E H + + CP+C E+
Sbjct: 544 LAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYV 603
Query: 255 VGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291
G A EL C H +H C+ WL+ +CPVCR P
Sbjct: 604 KGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 200 LGQGMQQLI---EEITQNDRPGPPPVPEAAIQAIPTVKIMESH--LANDTTCPVCKEEFK 254
L Q M+ + E + + PP + +I A+P + + E H + + CP+C E+
Sbjct: 479 LAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYV 538
Query: 255 VGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291
G A EL C H +H C+ WL+ +CPVCR P
Sbjct: 539 KGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 200 LGQGMQQLI---EEITQNDRPGPPPVPEAAIQAIPTVKIMESHLA--NDTTCPVCKEEFK 254
L Q M+ + E + + PP + +I +P ++E H A + CP+C E+
Sbjct: 582 LAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYI 641
Query: 255 VGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP----VSSASSSHDVDSD 304
A EL C H +H C+ WL+ +CPVCR P +SA++S D D D
Sbjct: 642 KDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSDPDPD 695
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 200 LGQGMQQLI---EEITQNDRPGPPPVPEAAIQAIPTVKIMESHLA--NDTTCPVCKEEFK 254
L Q M+ + E + + PP + +I +P ++E H A + CP+C E+
Sbjct: 582 LAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYI 641
Query: 255 VGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP------VSSASSSHDVDS 303
A EL C H +H C+ WL+ +CPVCR P ++ASS D+D+
Sbjct: 642 KDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSEPDLDA 696
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 200 LGQGMQQLI---EEITQNDRPGPPPVPEAAIQAIPTVKIMESHLA--NDTTCPVCKEEFK 254
L Q M+ + E + + PP + +I +P ++E H A + CP+C E+
Sbjct: 583 LAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYI 642
Query: 255 VGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291
A EL C H +H C+ WL+ +CPVCR P
Sbjct: 643 KDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 200 LGQGMQQLI---EEITQNDRPGPPPVPEAAIQAIPTVKIMESHLA--NDTTCPVCKEEFK 254
L Q M+ + E + + PP + +I +P ++E H A + CP+C E+
Sbjct: 583 LAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYI 642
Query: 255 VGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291
A EL C H +H C+ WL+ +CPVCR P
Sbjct: 643 KDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 224 EAAIQAIPTVKIMESHL----ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR 278
E+ I++ V++ ES +ND CP+C E+ R L C+H +H+ECI WL+
Sbjct: 301 ESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLK 360
Query: 279 LHNSCPVCR 287
LH+SCPVCR
Sbjct: 361 LHSSCPVCR 369
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 217 PGPPPVPEAAIQAIPTVKIMESHLANDTTCPVCKEEFKVGGE--ARELACKHIYHSECIV 274
P PPV A +A + + + + D TCP+C ++ E A ++ C HI+ C+
Sbjct: 78 PFQPPVKRAVKEAWDSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQ 137
Query: 275 PWLRLHNSCPVCRHEVPVSSASSSH 299
WL H +CP+CR EVP + S+H
Sbjct: 138 KWLENHCTCPLCRKEVPHETVGSAH 162
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 246 CPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
C +C+ ++K+G L CKH+YHSECI WL ++ CPVC EV
Sbjct: 197 CVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 217 PGPPPVPEAAIQAIPTVKIMESHLANDT-TCPVCKEEFKVGGEARELACKHIYHSECIVP 275
P EA IQ +P ++ + +D C +C EEF +G E R L C H +H ECI
Sbjct: 207 PAQTEAVEALIQELPKFRL--KAVPDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQ 264
Query: 276 WLRLHNSCPVCRHEV-------PVSSASSSHDVDSDDEHGDGARRRCLRLR---QLAFLW 325
WLRL+ CP CR V +S+ SS + + + R +R + + FL
Sbjct: 265 WLRLNVKCPRCRCSVFPDLDLSALSNLQSSGTEQHSQVNTETSEARYIRSQPQSESYFL- 323
Query: 326 PFRSRYNRRINPEGDNIAPSQAENSG 351
R I+P + A AEN G
Sbjct: 324 ----RVQSLIHPVHTDTALETAENGG 345
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 227 IQAIPTVKIMESHLANDT--TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCP 284
I ++P+ + E N T +C +C+ +++ + L CKH YHSECI WL+++ CP
Sbjct: 267 IASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCP 326
Query: 285 VCRHEVPVSSASSS 298
VC EV S++ S
Sbjct: 327 VCSAEVSTSTSGQS 340
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 245 TCPVCKEEFKVGGEARELACKHIYHSECIVPWL-RLHNSCPVCRHEVPVSSASSSHDVDS 303
C +C +E++ G + R L C H YH +C+ PWL + +CPVC+ +V S S + DS
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSETDS 298
Query: 304 DDEHGDGARRRCLRLRQLA 322
E + + L LR LA
Sbjct: 299 SQEENEVSENTPL-LRPLA 316
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 232 TVKIMESHLANDT-TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
TVK E + D C VC E FKV R L CKHI+H CI PWL H +CP+C+ +V
Sbjct: 250 TVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDV 309
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 232 TVKIMESHLANDT-TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
TVK E + D C VC E FKV R L CKHI+H CI PWL H +CP+C+ +V
Sbjct: 254 TVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDV 313
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 245 TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSS 294
TC VC E+ G + R+L C H YH CI WL +++CP+CR V V+S
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAS 616
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 238 SHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSASS 297
S ++ C +C EEF G E R ++C H +H C+ PWL H +CP+C + + S
Sbjct: 264 SSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEGDSFS 323
Query: 298 SHDVDSDDEHGDGARRRCLR---------LRQLAFLWPFRSRYNRRINPEGDNIAPSQAE 348
S G R +R L L P R+ R P PSQ
Sbjct: 324 QAPAASPSYQEPGRRLHLIRQHPGHAHYHLPSAYLLGPSRTSVAR--TPRPRPFLPSQEP 381
Query: 349 NSGWRH 354
+ G RH
Sbjct: 382 SMGSRH 387
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 236 MESHLANDT--TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293
M S ND TC VC E+ G + R+L C H YH CI WL +++CP+CR V S
Sbjct: 558 MRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLAS 617
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCR 287
++ TC VC E+ VG R L C H +H+ CI PWLR +CPVC+
Sbjct: 207 DELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCK 252
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 228 QAIPTVKIMESHLANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVC 286
+ +P V ES NDT C VC +++ + +++ +C H +H ECI WL H +CP+C
Sbjct: 79 EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLC 138
Query: 287 RHE-VPVSSASSSH---DVDSDDEHGDGAR 312
R +P S SH ++ S E+ +G
Sbjct: 139 RLSLIPKPSVDLSHQSIEIVSSIENTNGGE 168
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 225 AAIQAIPTVKI--MESHLANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN 281
I ++PT + + A+ T C VC K +AREL CKHI+H +C+ WL +
Sbjct: 85 TVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCS 144
Query: 282 SCPVCRHEV 290
+CPVCR EV
Sbjct: 145 TCPVCRTEV 153
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 236 MESHLANDT--TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
M S ND TC VC E+ G + R+L C H YH CI WL +++CP+CR V
Sbjct: 534 MRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 590
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 245 TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293
TC VC E+ G + R+L C H YH CI WL +++CP+CR V V+
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVA 632
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
LA D C +C ++ G E L C H +HS CIV WL++ +CP+C++ +
Sbjct: 301 LAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 245 TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293
TC VC E+ G + R+L C H YH CI WL +++CP+CR V V+
Sbjct: 702 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVA 750
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
A D TC +C+EE V + L C H++H+ C+ W + +CP CR ++
Sbjct: 287 AMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
A D C +C+EE G A++L C HI+HS C+ W + +CP CR +V
Sbjct: 286 ATDNVCIICREEMVTG--AKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDV 333
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 238 SHLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSASS 297
S ++ C +C EEF G E R ++C H +H C+ PWL H +CP+C + + S
Sbjct: 264 SSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFS 323
Query: 298 SHDVDSDDEHGDGARRRCLR---------LRQLAFLWPFRSRYNRRINPEGDNIAPSQAE 348
S G R +R L L P RS R P PSQ
Sbjct: 324 QSLGPSRSYQEPGRRLHLIRQHPGHAHYHLPAAYLLGPSRSAVAR--PPRPGPFLPSQEP 381
Query: 349 NSGWRH 354
G RH
Sbjct: 382 GMGPRH 387
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEV 290
A D TC +C+EE V + L C H++H+ C+ W + +CP CR ++
Sbjct: 287 AMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,468,752
Number of Sequences: 539616
Number of extensions: 7270117
Number of successful extensions: 21224
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 20650
Number of HSP's gapped (non-prelim): 645
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)