Query 018299
Match_columns 358
No_of_seqs 339 out of 1907
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.3E-16 4.4E-21 127.1 7.1 77 216-292 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1E-15 3.5E-20 117.1 3.9 70 223-292 2-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 2.5E-14 8.7E-19 102.5 4.3 51 241-291 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 4.5E-14 1.5E-18 105.9 5.6 55 241-295 12-66 (69)
5 2ep4_A Ring finger protein 24; 99.4 7.6E-14 2.6E-18 106.1 5.9 54 241-294 13-66 (74)
6 2ect_A Ring finger protein 126 99.4 7.5E-14 2.6E-18 107.2 6.0 56 240-295 12-67 (78)
7 2ecl_A Ring-box protein 2; RNF 99.4 3.6E-13 1.2E-17 104.9 4.1 51 242-292 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.3 5.2E-13 1.8E-17 95.4 4.2 50 242-291 4-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 6E-13 2E-17 99.2 4.0 52 241-292 13-68 (69)
10 1v87_A Deltex protein 2; ring- 99.3 8.8E-13 3E-17 108.4 5.1 52 242-293 24-95 (114)
11 3dpl_R Ring-box protein 1; ubi 99.3 9.1E-13 3.1E-17 108.1 4.9 50 242-291 36-100 (106)
12 3ng2_A RNF4, snurf, ring finge 99.3 8.7E-13 3E-17 99.0 3.9 53 241-293 8-64 (71)
13 1chc_A Equine herpes virus-1 r 99.3 1.8E-12 6.3E-17 96.7 4.9 50 242-293 4-53 (68)
14 2djb_A Polycomb group ring fin 99.3 3.4E-12 1.2E-16 96.6 5.8 53 240-295 12-65 (72)
15 2xeu_A Ring finger protein 4; 99.3 2.2E-12 7.4E-17 94.7 3.8 52 242-293 2-57 (64)
16 2d8t_A Dactylidin, ring finger 99.3 1.8E-12 6.1E-17 97.9 3.3 48 242-292 14-61 (71)
17 2ecn_A Ring finger protein 141 99.2 2.4E-12 8.3E-17 96.6 3.4 51 241-295 13-63 (70)
18 2yur_A Retinoblastoma-binding 99.2 1.1E-11 3.9E-16 94.4 5.7 49 241-292 13-64 (74)
19 2ct2_A Tripartite motif protei 99.2 8.2E-12 2.8E-16 97.4 5.0 54 240-293 12-69 (88)
20 2d8s_A Cellular modulator of i 99.2 7E-12 2.4E-16 97.8 4.1 52 242-294 14-72 (80)
21 2ysl_A Tripartite motif-contai 99.2 9E-12 3.1E-16 94.0 4.6 51 240-293 17-70 (73)
22 2csy_A Zinc finger protein 183 99.2 9.2E-12 3.2E-16 96.3 4.4 48 241-291 13-60 (81)
23 4ayc_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 108.2 2.5 49 242-293 52-100 (138)
24 2ecy_A TNF receptor-associated 99.2 1E-11 3.4E-16 92.4 3.4 50 241-293 13-63 (66)
25 1t1h_A Gspef-atpub14, armadill 99.2 1.8E-11 6.1E-16 93.8 4.7 51 240-293 5-56 (78)
26 3lrq_A E3 ubiquitin-protein li 99.1 4.9E-12 1.7E-16 102.1 0.6 49 241-292 20-70 (100)
27 4a0k_B E3 ubiquitin-protein li 99.1 4.8E-12 1.7E-16 105.6 0.2 51 242-292 47-112 (117)
28 2ecw_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 93.0 4.6 51 240-293 16-72 (85)
29 2ysj_A Tripartite motif-contai 99.1 4.8E-11 1.6E-15 87.7 4.9 44 240-286 17-63 (63)
30 2ckl_A Polycomb group ring fin 99.1 2.5E-11 8.7E-16 98.9 3.7 52 239-293 11-63 (108)
31 2ecv_A Tripartite motif-contai 99.1 5E-11 1.7E-15 91.9 5.2 50 241-293 17-72 (85)
32 3fl2_A E3 ubiquitin-protein li 99.1 1.2E-11 4.2E-16 103.3 1.0 48 242-292 51-99 (124)
33 2egp_A Tripartite motif-contai 99.1 1.7E-11 5.8E-16 93.8 1.1 50 240-292 9-65 (79)
34 3ztg_A E3 ubiquitin-protein li 99.1 9.3E-11 3.2E-15 92.5 4.9 49 240-291 10-61 (92)
35 1z6u_A NP95-like ring finger p 99.1 1.9E-11 6.6E-16 106.0 1.0 50 241-293 76-126 (150)
36 4ap4_A E3 ubiquitin ligase RNF 99.1 6.3E-11 2.2E-15 98.7 4.1 54 242-295 6-63 (133)
37 2y43_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 96.4 2.5 48 242-292 21-69 (99)
38 2ct0_A Non-SMC element 1 homol 99.0 1.7E-10 6E-15 88.6 5.1 52 242-295 14-67 (74)
39 2ecj_A Tripartite motif-contai 99.0 7.7E-11 2.6E-15 84.8 2.9 43 241-286 13-58 (58)
40 2ckl_B Ubiquitin ligase protei 99.0 5.2E-11 1.8E-15 104.2 1.8 49 241-292 52-102 (165)
41 1g25_A CDK-activating kinase a 99.0 2.5E-10 8.7E-15 84.4 3.8 51 243-293 3-56 (65)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 1.9E-10 6.5E-15 95.8 2.9 52 242-293 71-126 (133)
43 1jm7_A BRCA1, breast cancer ty 99.0 2.4E-10 8.3E-15 93.1 3.1 49 242-293 20-71 (112)
44 3hct_A TNF receptor-associated 98.9 2.6E-10 9E-15 94.4 3.3 50 240-292 15-65 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 7.5E-11 2.6E-15 97.1 -0.1 48 242-292 14-62 (115)
46 3knv_A TNF receptor-associated 98.9 1.5E-10 5.2E-15 99.3 1.8 51 239-292 27-78 (141)
47 2kr4_A Ubiquitin conjugation f 98.9 6.1E-10 2.1E-14 87.4 4.2 49 241-292 12-60 (85)
48 2y1n_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 111.7 3.0 47 243-292 332-379 (389)
49 2kre_A Ubiquitin conjugation f 98.9 8.1E-10 2.8E-14 89.5 4.3 49 241-292 27-75 (100)
50 1rmd_A RAG1; V(D)J recombinati 98.9 5.5E-10 1.9E-14 92.0 2.9 48 242-292 22-70 (116)
51 1wgm_A Ubiquitin conjugation f 98.9 1E-09 3.5E-14 88.5 4.5 49 241-292 20-69 (98)
52 1e4u_A Transcriptional repress 98.9 2E-09 6.7E-14 83.3 4.8 55 240-295 8-65 (78)
53 2vje_A E3 ubiquitin-protein li 98.8 1.6E-09 5.5E-14 80.5 3.4 47 242-291 7-56 (64)
54 1bor_A Transcription factor PM 98.8 1.1E-09 3.7E-14 79.1 1.2 47 242-294 5-51 (56)
55 4ic3_A E3 ubiquitin-protein li 98.8 6E-10 2.1E-14 85.0 -0.6 44 242-292 23-67 (74)
56 1jm7_B BARD1, BRCA1-associated 98.8 1E-09 3.6E-14 90.7 0.5 46 242-292 21-67 (117)
57 2vje_B MDM4 protein; proto-onc 98.8 4E-09 1.4E-13 78.1 3.5 47 242-291 6-55 (63)
58 2yu4_A E3 SUMO-protein ligase 98.7 8.3E-09 2.9E-13 82.3 3.5 48 241-291 5-62 (94)
59 3hcs_A TNF receptor-associated 98.6 9.5E-09 3.3E-13 90.0 3.3 50 240-292 15-65 (170)
60 2c2l_A CHIP, carboxy terminus 98.6 1.4E-08 4.7E-13 94.7 4.3 48 242-292 207-255 (281)
61 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.5E-08 5.3E-13 98.1 0.9 54 242-295 307-376 (381)
62 2f42_A STIP1 homology and U-bo 98.5 6.7E-08 2.3E-12 86.1 4.1 49 241-292 104-153 (179)
63 2ecg_A Baculoviral IAP repeat- 98.5 4.8E-08 1.6E-12 74.4 2.5 44 243-293 25-69 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.4E-08 2.5E-12 70.8 3.0 48 242-292 5-59 (60)
65 2ea5_A Cell growth regulator w 98.4 9.8E-08 3.4E-12 71.7 3.6 45 242-293 14-59 (68)
66 2yho_A E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 76.0 0.0 44 242-292 17-61 (79)
67 2bay_A PRE-mRNA splicing facto 98.3 1.6E-07 5.4E-12 69.2 2.1 49 243-294 3-52 (61)
68 1wim_A KIAA0161 protein; ring 98.3 2.3E-07 7.7E-12 73.5 2.8 48 242-289 4-61 (94)
69 3htk_C E3 SUMO-protein ligase 98.2 4.6E-07 1.6E-11 85.0 3.6 49 241-292 179-232 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.2E-07 7.4E-12 90.8 1.3 45 241-292 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 97.9 8.8E-06 3E-10 65.3 3.8 45 245-291 3-48 (101)
72 3nw0_A Non-structural maintena 97.6 2.5E-05 8.6E-10 72.4 3.4 50 243-295 180-232 (238)
73 2ko5_A Ring finger protein Z; 95.4 0.0064 2.2E-07 48.1 2.1 51 242-297 27-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.086 2.9E-06 41.3 3.1 33 242-276 2-36 (101)
75 2lri_C Autoimmune regulator; Z 91.7 0.087 3E-06 38.9 2.4 45 242-290 11-60 (66)
76 4ayb_P DNA-directed RNA polyme 88.9 0.2 6.8E-06 34.5 2.0 36 30-65 2-38 (48)
77 2kdx_A HYPA, hydrogenase/ureas 88.5 0.31 1.1E-05 39.8 3.4 35 28-65 70-105 (119)
78 3h0g_L DNA-directed RNA polyme 88.3 0.27 9.1E-06 36.1 2.5 35 29-65 19-53 (63)
79 1we9_A PHD finger family prote 87.8 0.11 3.9E-06 37.6 0.2 49 241-289 4-58 (64)
80 2l5u_A Chromodomain-helicase-D 85.8 0.29 9.9E-06 35.3 1.5 45 241-289 9-58 (61)
81 1wil_A KIAA1045 protein; ring 84.9 0.49 1.7E-05 36.6 2.5 32 241-276 13-47 (89)
82 2k16_A Transcription initiatio 83.7 0.3 1E-05 36.4 0.9 49 242-291 17-70 (75)
83 1f62_A Transcription factor WS 82.7 0.44 1.5E-05 32.8 1.3 43 245-288 2-49 (51)
84 3a43_A HYPD, hydrogenase nicke 82.2 0.72 2.4E-05 38.8 2.7 36 28-63 67-120 (139)
85 3m62_A Ubiquitin conjugation f 82.2 0.84 2.9E-05 49.7 3.9 49 242-293 890-939 (968)
86 3lqh_A Histone-lysine N-methyl 82.1 0.53 1.8E-05 41.6 1.9 48 243-290 2-64 (183)
87 2yql_A PHD finger protein 21A; 81.2 0.22 7.4E-06 35.2 -0.8 45 241-288 7-55 (56)
88 1fp0_A KAP-1 corepressor; PHD 80.4 0.9 3.1E-05 35.4 2.4 46 241-290 23-73 (88)
89 2ct7_A Ring finger protein 31; 80.1 1 3.4E-05 34.6 2.7 34 28-62 22-55 (86)
90 3o36_A Transcription intermedi 80.0 0.39 1.3E-05 42.0 0.3 46 242-291 3-53 (184)
91 2puy_A PHD finger protein 21A; 79.6 0.2 6.7E-06 36.0 -1.5 47 242-291 4-54 (60)
92 1twf_L ABC10-alpha, DNA-direct 79.5 1.3 4.4E-05 33.0 3.0 40 24-65 21-60 (70)
93 1xwh_A Autoimmune regulator; P 79.2 0.49 1.7E-05 34.6 0.6 44 242-289 7-55 (66)
94 1mm2_A MI2-beta; PHD, zinc fin 75.0 0.46 1.6E-05 34.2 -0.6 45 242-289 8-56 (61)
95 2ysm_A Myeloid/lymphoid or mix 74.5 0.82 2.8E-05 36.6 0.7 46 242-287 6-55 (111)
96 2yt5_A Metal-response element- 74.0 0.56 1.9E-05 34.0 -0.4 50 242-291 5-63 (66)
97 1wep_A PHF8; structural genomi 71.9 1.7 5.7E-05 32.8 1.8 47 243-290 12-64 (79)
98 3i2d_A E3 SUMO-protein ligase 71.7 2.3 7.9E-05 41.5 3.2 48 243-292 249-300 (371)
99 3u5n_A E3 ubiquitin-protein li 71.4 0.92 3.1E-05 40.4 0.3 46 242-291 6-56 (207)
100 2e6r_A Jumonji/ARID domain-con 71.2 0.52 1.8E-05 36.9 -1.2 48 242-290 15-67 (92)
101 3v43_A Histone acetyltransfera 69.8 1.4 4.7E-05 35.5 1.0 45 244-288 62-111 (112)
102 2vpb_A Hpygo1, pygopus homolog 69.2 3 0.0001 30.4 2.7 34 242-275 7-42 (65)
103 2lv9_A Histone-lysine N-methyl 69.1 1.3 4.3E-05 35.0 0.6 44 244-288 29-75 (98)
104 1weo_A Cellulose synthase, cat 69.0 12 0.0004 29.2 6.0 51 243-293 16-71 (93)
105 2kgg_A Histone demethylase jar 68.8 1.8 6.2E-05 29.9 1.3 43 245-287 4-52 (52)
106 2ku3_A Bromodomain-containing 68.4 1.7 5.8E-05 32.3 1.2 49 241-289 14-66 (71)
107 2lcq_A Putative toxin VAPC6; P 68.0 2.6 8.8E-05 35.9 2.4 34 22-59 124-157 (165)
108 1weu_A Inhibitor of growth fam 67.7 2.3 7.8E-05 33.3 1.8 45 242-290 35-86 (91)
109 2con_A RUH-035 protein, NIN on 67.0 3.9 0.00013 31.2 3.0 33 30-66 14-46 (79)
110 2l43_A N-teminal domain from h 65.8 1.6 5.5E-05 33.7 0.6 52 241-292 23-78 (88)
111 1wev_A Riken cDNA 1110020M19; 65.5 1.8 6.2E-05 33.4 0.8 51 243-293 16-76 (88)
112 2xb1_A Pygopus homolog 2, B-ce 64.4 3 0.0001 33.2 2.0 48 243-290 3-62 (105)
113 1wen_A Inhibitor of growth fam 63.7 2.7 9.1E-05 31.2 1.5 44 242-290 15-66 (71)
114 1wfh_A Zinc finger (AN1-like) 63.6 4.1 0.00014 29.8 2.4 32 26-63 10-41 (64)
115 2ri7_A Nucleosome-remodeling f 63.4 1.7 5.7E-05 37.4 0.3 48 242-290 7-60 (174)
116 2ro1_A Transcription intermedi 62.9 1.3 4.6E-05 38.9 -0.4 44 243-289 2-49 (189)
117 1wee_A PHD finger family prote 62.6 1.3 4.3E-05 32.8 -0.5 47 243-290 16-67 (72)
118 1wem_A Death associated transc 62.5 1.9 6.6E-05 32.1 0.5 46 243-290 16-71 (76)
119 4fo9_A E3 SUMO-protein ligase 62.4 4.3 0.00015 39.4 3.0 48 243-292 215-266 (360)
120 1wfp_A Zinc finger (AN1-like) 62.2 5.6 0.00019 29.9 3.0 30 28-63 22-51 (74)
121 1wg2_A Zinc finger (AN1-like) 60.0 4.7 0.00016 29.5 2.1 30 28-63 12-41 (64)
122 3v43_A Histone acetyltransfera 59.4 10 0.00035 30.2 4.4 33 242-274 4-42 (112)
123 2kn9_A Rubredoxin; metalloprot 59.2 13 0.00045 28.4 4.6 39 21-59 17-69 (81)
124 2cs3_A Protein C14ORF4, MY039 58.3 6 0.0002 30.3 2.5 37 243-280 15-53 (93)
125 3shb_A E3 ubiquitin-protein li 57.8 1.5 5.2E-05 33.1 -0.8 26 263-288 46-76 (77)
126 1x4w_A Hypothetical protein FL 57.1 2.6 8.9E-05 31.1 0.4 34 27-63 11-44 (67)
127 1wew_A DNA-binding family prot 56.6 2.5 8.5E-05 31.7 0.2 47 243-290 16-73 (78)
128 2jmi_A Protein YNG1, ING1 homo 54.9 2.2 7.6E-05 33.3 -0.3 42 242-288 25-75 (90)
129 4gne_A Histone-lysine N-methyl 54.7 9.4 0.00032 30.6 3.4 48 241-294 13-67 (107)
130 2e6s_A E3 ubiquitin-protein li 52.8 2.6 9E-05 31.7 -0.2 44 244-288 27-76 (77)
131 3asl_A E3 ubiquitin-protein li 51.9 2.6 8.9E-05 31.1 -0.4 43 245-288 20-68 (70)
132 2lbm_A Transcriptional regulat 51.4 12 0.00042 31.5 3.7 44 241-288 61-116 (142)
133 2jz8_A Uncharacterized protein 51.3 4.5 0.00015 31.3 0.9 25 41-65 39-63 (87)
134 2ee8_A Protein ODD-skipped-rel 50.9 9.9 0.00034 28.5 2.9 46 18-63 4-58 (106)
135 3c6w_A P28ING5, inhibitor of g 50.6 2.7 9.4E-05 29.9 -0.4 42 242-288 8-57 (59)
136 2jvm_A Uncharacterized protein 48.9 5.3 0.00018 30.5 0.9 18 48-65 51-68 (80)
137 3ask_A E3 ubiquitin-protein li 48.4 4.3 0.00015 36.9 0.4 44 244-288 175-224 (226)
138 1dvp_A HRS, hepatocyte growth 47.9 25 0.00087 31.1 5.5 35 242-276 160-195 (220)
139 2vnf_A ING 4, P29ING4, inhibit 47.6 3.2 0.00011 29.6 -0.4 41 243-288 10-58 (60)
140 1vfy_A Phosphatidylinositol-3- 46.2 14 0.00049 27.1 2.9 33 243-275 11-44 (73)
141 2yw8_A RUN and FYVE domain-con 46.1 14 0.00047 27.8 2.9 34 243-276 19-53 (82)
142 2kwj_A Zinc finger protein DPF 45.6 1.7 5.8E-05 35.1 -2.5 48 244-291 59-110 (114)
143 3t7l_A Zinc finger FYVE domain 45.6 14 0.00049 28.3 3.0 35 243-277 20-55 (90)
144 1wff_A Riken cDNA 2810002D23 p 45.6 15 0.0005 28.3 3.0 28 31-63 25-52 (85)
145 1joc_A EEA1, early endosomal a 45.1 14 0.00048 30.2 3.0 33 243-275 69-102 (125)
146 1z2q_A LM5-1; membrane protein 45.0 15 0.00053 27.6 3.1 34 243-276 21-55 (84)
147 1iml_A CRIP, cysteine rich int 44.6 11 0.00038 27.2 2.1 37 245-291 2-38 (76)
148 2cu8_A Cysteine-rich protein 2 44.0 14 0.00048 26.6 2.6 40 243-292 9-48 (76)
149 2ysm_A Myeloid/lymphoid or mix 43.9 3.1 0.00011 33.1 -1.2 44 245-289 56-104 (111)
150 1y02_A CARP2, FYVE-ring finger 42.9 3.8 0.00013 33.6 -0.8 48 243-290 19-67 (120)
151 1x64_A Alpha-actinin-2 associa 42.2 29 0.001 25.8 4.3 40 242-292 24-63 (89)
152 3zyq_A Hepatocyte growth facto 42.1 30 0.001 30.9 5.0 35 242-276 163-198 (226)
153 1wfk_A Zinc finger, FYVE domai 41.8 18 0.00061 27.7 3.0 51 242-292 8-66 (88)
154 1x4u_A Zinc finger, FYVE domai 40.6 18 0.00063 27.2 2.9 32 243-274 14-46 (84)
155 3ql9_A Transcriptional regulat 40.6 22 0.00076 29.4 3.6 44 241-288 55-110 (129)
156 1x6e_A Zinc finger protein 24; 40.4 13 0.00046 25.8 2.0 40 23-62 6-54 (72)
157 2dj7_A Actin-binding LIM prote 39.7 21 0.0007 26.3 3.0 39 243-291 15-53 (80)
158 2jrr_A Uncharacterized protein 38.3 6.7 0.00023 28.9 0.0 17 48-64 38-54 (67)
159 1zbd_B Rabphilin-3A; G protein 38.1 18 0.00061 30.0 2.6 34 242-275 54-89 (134)
160 1wfl_A Zinc finger protein 216 37.9 19 0.00066 27.0 2.5 31 27-63 21-51 (74)
161 2a20_A Regulating synaptic mem 37.3 2.8 9.6E-05 30.2 -2.1 50 239-288 5-59 (62)
162 2gmg_A Hypothetical protein PF 35.3 17 0.00059 29.0 2.0 33 29-63 65-97 (105)
163 2kwj_A Zinc finger protein DPF 34.4 32 0.0011 27.3 3.5 33 244-276 2-41 (114)
164 1z60_A TFIIH basal transcripti 34.4 11 0.00037 27.1 0.6 42 244-286 16-58 (59)
165 1x63_A Skeletal muscle LIM-pro 34.0 35 0.0012 24.7 3.5 41 243-292 15-55 (82)
166 2b9d_A E7 protein; zinc finger 33.0 12 0.00041 26.1 0.6 26 33-58 10-49 (52)
167 1x61_A Thyroid receptor intera 32.8 40 0.0014 23.7 3.5 40 243-291 5-44 (72)
168 2dar_A PDZ and LIM domain prot 32.5 31 0.0011 25.7 3.0 39 243-292 25-63 (90)
169 1x62_A C-terminal LIM domain p 32.3 29 0.00098 25.2 2.7 38 243-291 15-52 (79)
170 2co8_A NEDD9 interacting prote 31.1 32 0.0011 25.3 2.8 41 243-293 15-55 (82)
171 3fyb_A Protein of unknown func 31.0 17 0.00059 28.7 1.3 12 268-279 42-53 (104)
172 2o35_A Hypothetical protein DU 30.8 18 0.0006 28.7 1.3 12 268-279 43-54 (105)
173 1x4l_A Skeletal muscle LIM-pro 30.6 48 0.0016 23.3 3.7 40 243-291 5-46 (72)
174 1x4k_A Skeletal muscle LIM-pro 30.2 38 0.0013 23.8 3.0 41 243-292 5-45 (72)
175 1wyh_A SLIM 2, skeletal muscle 29.9 31 0.0011 24.3 2.5 41 243-292 5-45 (72)
176 2d8z_A Four and A half LIM dom 29.2 44 0.0015 23.3 3.2 38 243-291 5-42 (70)
177 1pft_A TFIIB, PFTFIIBN; N-term 28.6 18 0.00061 24.4 0.9 33 31-64 5-38 (50)
178 1a7i_A QCRP2 (LIM1); LIM domai 28.6 25 0.00087 25.5 1.8 41 243-293 7-47 (81)
179 2eps_A POZ-, at HOOK-, and zin 28.3 64 0.0022 20.8 3.8 35 27-61 8-52 (54)
180 2cot_A Zinc finger protein 435 27.9 29 0.001 24.2 2.1 38 25-62 12-58 (77)
181 1x68_A FHL5 protein; four-and- 27.6 46 0.0016 23.8 3.2 41 243-291 5-46 (76)
182 2das_A Zinc finger MYM-type pr 27.5 57 0.0019 23.4 3.3 34 243-276 20-55 (62)
183 3o70_A PHD finger protein 13; 27.3 23 0.00078 25.7 1.3 44 243-288 19-66 (68)
184 1g47_A Pinch protein; LIM doma 27.3 49 0.0017 23.5 3.2 41 243-292 11-51 (77)
185 2d8v_A Zinc finger FYVE domain 27.2 38 0.0013 24.8 2.5 30 242-275 7-37 (67)
186 1s24_A Rubredoxin 2; electron 26.6 42 0.0014 25.9 2.8 35 25-59 29-77 (87)
187 3mpx_A FYVE, rhogef and PH dom 26.6 14 0.00047 35.8 0.0 48 243-290 375-430 (434)
188 2zet_C Melanophilin; complex, 26.5 34 0.0012 29.0 2.5 47 242-289 67-117 (153)
189 2k2d_A Ring finger and CHY zin 26.3 36 0.0012 25.6 2.3 35 30-65 36-70 (79)
190 3f6q_B LIM and senescent cell 24.6 45 0.0015 23.1 2.5 42 243-293 11-52 (72)
191 2l9z_A PR domain zinc finger p 24.5 28 0.00096 22.8 1.2 17 25-41 5-21 (39)
192 1wjp_A Zinc finger protein 295 24.5 21 0.00072 26.8 0.7 47 17-63 2-55 (107)
193 2l3k_A Rhombotin-2, linker, LI 24.4 29 0.00099 27.6 1.6 33 244-277 37-69 (123)
194 1nyp_A Pinch protein; LIM doma 24.2 48 0.0016 22.9 2.6 39 243-292 5-43 (66)
195 2d8x_A Protein pinch; LIM doma 24.2 41 0.0014 23.6 2.2 39 243-292 5-43 (70)
196 2g6q_A Inhibitor of growth pro 23.5 13 0.00043 26.7 -0.7 41 243-288 11-59 (62)
197 2jmo_A Parkin; IBR, E3 ligase, 23.4 43 0.0015 24.9 2.3 31 30-61 24-61 (80)
198 1zfo_A LAsp-1; LIM domain, zin 22.8 24 0.00081 21.5 0.6 27 244-272 4-30 (31)
199 2d8y_A Eplin protein; LIM doma 22.6 59 0.002 24.1 3.0 41 243-293 15-55 (91)
200 2epr_A POZ-, at HOOK-, and zin 22.2 49 0.0017 20.7 2.2 34 25-58 6-48 (48)
201 1e8j_A Rubredoxin; iron-sulfur 21.9 68 0.0023 22.1 2.9 30 30-59 2-45 (52)
202 1vd4_A Transcription initiatio 21.6 34 0.0012 23.2 1.3 37 29-65 12-54 (62)
203 2m0e_A Zinc finger and BTB dom 21.5 35 0.0012 18.1 1.1 11 51-61 3-13 (29)
204 6rxn_A Rubredoxin; electron tr 21.2 56 0.0019 22.0 2.3 31 29-59 2-39 (46)
205 3cw1_L U1 small nuclear ribonu 21.2 28 0.00094 26.3 0.8 13 29-41 1-13 (77)
206 2kpi_A Uncharacterized protein 21.0 65 0.0022 22.5 2.6 16 242-257 9-24 (56)
207 2cur_A Skeletal muscle LIM-pro 20.6 54 0.0018 22.8 2.3 38 243-291 5-42 (69)
208 2jvx_A NF-kappa-B essential mo 20.3 33 0.0011 20.8 0.8 12 281-292 4-15 (28)
209 1v6g_A Actin binding LIM prote 20.0 59 0.002 23.4 2.4 39 243-292 15-53 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=127.10 Aligned_cols=77 Identities=35% Similarity=0.869 Sum_probs=67.9
Q ss_pred CCCCCCCCHHHHHhCCceeeeccc--cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 216 RPGPPPVPEAAIQAIPTVKIMESH--LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 216 ~~~~ppas~~~i~~lp~~~~~~~~--~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.....+++++.|++||.+.+.... ...+..|+||++.|..++.++.|+|+|.||..||..||+.+.+||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456778999999999999887654 33567899999999988889999999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=117.11 Aligned_cols=70 Identities=26% Similarity=0.692 Sum_probs=59.7
Q ss_pred CHHHHHhCCceeeecccc-CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 223 PEAAIQAIPTVKIMESHL-ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 223 s~~~i~~lp~~~~~~~~~-~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
+.+.++.||.+++..... .++..|+||++.|..++.++.++|+|.||..||..||+.+.+||+||+++..
T Consensus 2 s~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cHhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345677888888765433 3568999999999988888999999999999999999999999999998864
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=2.5e-14 Score=102.48 Aligned_cols=51 Identities=43% Similarity=0.944 Sum_probs=46.9
Q ss_pred CCCccccccccccccCCccEEec-cCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 241 ANDTTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
+++.+|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 35679999999999888899998 9999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=105.93 Aligned_cols=55 Identities=27% Similarity=0.850 Sum_probs=49.2
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCCCC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSA 295 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 295 (358)
..+..|+||++.|..++.++.++|+|.||..||..|++.+.+||+||..+.....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 3467999999999888889999999999999999999999999999999876543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.6e-14 Score=106.11 Aligned_cols=54 Identities=33% Similarity=0.807 Sum_probs=48.7
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCCC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSS 294 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 294 (358)
..+..|+||++.|.....++.|+|+|.||..||..|++.+.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 447899999999998888889999999999999999999999999999986543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=7.5e-14 Score=107.18 Aligned_cols=56 Identities=45% Similarity=1.161 Sum_probs=49.8
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCCCC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSA 295 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 295 (358)
...+..|+||++.|.....++.++|+|.||..||..|++.+.+||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34578999999999988888899999999999999999999999999999876543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=104.85 Aligned_cols=51 Identities=25% Similarity=0.733 Sum_probs=42.3
Q ss_pred CCcccccccccccc-----------CCccEEec-cCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKV-----------GGEARELA-CKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~-----------~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
++..|+||++.|.. ++.++.++ |+|.||..||.+||+.+++||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 36678888888853 44466666 99999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=5.2e-13 Score=95.42 Aligned_cols=50 Identities=28% Similarity=0.695 Sum_probs=43.8
Q ss_pred CCccccccccccccC-CccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 242 NDTTCPVCKEEFKVG-GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~-~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
.+..|+||++.|..+ +.++.++|+|.||..||..|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467999999999643 35788899999999999999999999999999874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6e-13 Score=99.16 Aligned_cols=52 Identities=25% Similarity=0.701 Sum_probs=44.7
Q ss_pred CCCccccccccccccC----CccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVG----GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.+...|+||++.|... ..++.++|+|.||..||..|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4578999999999843 234889999999999999999999999999998854
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=8.8e-13 Score=108.37 Aligned_cols=52 Identities=23% Similarity=0.558 Sum_probs=42.5
Q ss_pred CCccccccccccccCC---------------ccEEeccCCeeChhhHHHHHh-----cCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVGG---------------EARELACKHIYHSECIVPWLR-----LHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~---------------~~~~lpC~H~FH~~CI~~WL~-----~~~sCPvCR~~l~~~ 293 (358)
.+..|+||++.|.... .++.++|+|.||..||..||. .+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3579999999997542 344788999999999999994 466899999988654
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=9.1e-13 Score=108.13 Aligned_cols=50 Identities=24% Similarity=0.572 Sum_probs=43.2
Q ss_pred CCccccccccccccC---------------CccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 242 NDTTCPVCKEEFKVG---------------GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~---------------~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
++..|+||++.|... ..++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 478999999998743 13567889999999999999999999999999864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=8.7e-13 Score=99.05 Aligned_cols=53 Identities=25% Similarity=0.688 Sum_probs=45.6
Q ss_pred CCCccccccccccccC----CccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 241 ANDTTCPVCKEEFKVG----GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
.++..|+||++.+... +.++.++|+|.||..||..|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3568999999999742 3458899999999999999999999999999998654
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.8e-12 Score=96.67 Aligned_cols=50 Identities=30% Similarity=0.782 Sum_probs=44.0
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
.+..|+||++.+. +.++.++|+|.||..||..|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4679999999987 2458899999999999999999999999999988643
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.4e-12 Score=96.64 Aligned_cols=53 Identities=28% Similarity=0.631 Sum_probs=45.5
Q ss_pred cCCCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCCCCCccceeccCCCC
Q 018299 240 LANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSA 295 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 295 (358)
+.++..|+||++.+. .++.+ +|+|.||..||..|++.+.+||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 345789999999998 56666 899999999999999999999999999866543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=94.66 Aligned_cols=52 Identities=25% Similarity=0.671 Sum_probs=44.7
Q ss_pred CCccccccccccccC----CccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVG----GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
++..|+||++.+... ..++.++|+|.||..||..|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 367999999999742 3458889999999999999999999999999988653
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=97.94 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=43.7
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
++..|+||++.+. .++.++|+|.||..||..|++.+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4679999999998 67889999999999999999999999999998854
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-12 Score=96.65 Aligned_cols=51 Identities=25% Similarity=0.716 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCCCC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSA 295 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 295 (358)
.+...|+||++.+.. +.++|+|.||..||..|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456899999999983 889999999999999999999999999999875543
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=94.37 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCccEEec-cCCeeChhhHHHHHhcC--CCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLH--NSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~~ 292 (358)
.++..|+||++.|. .++.++ |+|.||..||..|++.+ .+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45689999999998 678899 99999999999999876 589999997544
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.2e-12 Score=97.42 Aligned_cols=54 Identities=26% Similarity=0.601 Sum_probs=46.1
Q ss_pred cCCCccccccccccccCCc-cEEeccCCeeChhhHHHHHhcC---CCCCccceeccCC
Q 018299 240 LANDTTCPVCKEEFKVGGE-ARELACKHIYHSECIVPWLRLH---NSCPVCRHEVPVS 293 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~-~~~lpC~H~FH~~CI~~WL~~~---~sCPvCR~~l~~~ 293 (358)
+.+...|+||++.|...+. ++.++|+|.||..||..|++.+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4457899999999986543 8889999999999999999986 6899999988653
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7e-12 Score=97.75 Aligned_cols=52 Identities=21% Similarity=0.641 Sum_probs=44.4
Q ss_pred CCccccccccccccCCccEEeccC-----CeeChhhHHHHHhcCC--CCCccceeccCCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACK-----HIYHSECIVPWLRLHN--SCPVCRHEVPVSS 294 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~-----H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~ 294 (358)
++..|.||+++|..++.+ ++||+ |.||..||.+||+.++ +||+||+++....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 467999999999876654 68996 9999999999999764 8999999987654
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9e-12 Score=94.05 Aligned_cols=51 Identities=24% Similarity=0.647 Sum_probs=43.7
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHh---cCCCCCccceeccCC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR---LHNSCPVCRHEVPVS 293 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~---~~~sCPvCR~~l~~~ 293 (358)
+.++..|+||++.+. .++.++|+|.||..||..|++ ....||+||..+..+
T Consensus 17 ~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 345789999999998 678889999999999999997 355799999988654
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.2e-12 Score=96.27 Aligned_cols=48 Identities=19% Similarity=0.596 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
.....|+||++.|. .++.++|+|.||..||..|++...+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34679999999997 6778999999999999999999999999999885
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=4.4e-12 Score=108.17 Aligned_cols=49 Identities=37% Similarity=0.900 Sum_probs=44.3
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
++..|+||++.|. .++.++|+|.||..||..|+..+.+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4568999999998 688999999999999999999999999999988543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1e-11 Score=92.37 Aligned_cols=50 Identities=16% Similarity=0.523 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHh-cCCCCCccceeccCC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR-LHNSCPVCRHEVPVS 293 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~ 293 (358)
.++..|+||++.+. .++.++|+|.||..||..|++ ...+||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45689999999998 556689999999999999995 556899999988654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.8e-11 Score=93.79 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=44.8
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhc-CCCCCccceeccCC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL-HNSCPVCRHEVPVS 293 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 293 (358)
+.++..|+||++.|. .++.++|+|.||..||..|++. +.+||+||..+...
T Consensus 5 ~~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 345789999999998 6788999999999999999987 77899999988643
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=4.9e-12 Score=102.11 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCccEE-eccCCeeChhhHHHHHhcC-CCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARE-LACKHIYHSECIVPWLRLH-NSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~-lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~ 292 (358)
.++..|+||++.|. .++. ++|+|.||..||..|++.. .+||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45689999999998 6777 8999999999999999988 689999999854
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.14 E-value=4.8e-12 Score=105.58 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=1.1
Q ss_pred CCccccccccccccC-------------C--ccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVG-------------G--EARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~-------------~--~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.++.|+||++.|... + .+..++|+|.||..||.+||+.+++||+||.++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 468999999999742 1 23345899999999999999999999999998643
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=3.2e-11 Score=93.05 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=44.2
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhc------CCCCCccceeccCC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL------HNSCPVCRHEVPVS 293 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~ 293 (358)
+.++..|+||++.|. .++.++|+|.||..||..|++. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 345789999999998 6778999999999999999998 66799999988653
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.8e-11 Score=87.72 Aligned_cols=44 Identities=25% Similarity=0.741 Sum_probs=38.6
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhc---CCCCCcc
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL---HNSCPVC 286 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~---~~sCPvC 286 (358)
+.++..|+||++.|. .++.++|+|.||..||..|++. ..+||+|
T Consensus 17 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345789999999998 6888999999999999999983 5579998
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12 E-value=2.5e-11 Score=98.91 Aligned_cols=52 Identities=29% Similarity=0.699 Sum_probs=45.4
Q ss_pred ccCCCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 239 HLANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 239 ~~~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
.+.++..|+||++.|. .++.+ +|+|.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3456789999999998 56776 9999999999999999999999999988653
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5e-11 Score=91.94 Aligned_cols=50 Identities=30% Similarity=0.730 Sum_probs=43.9
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhc------CCCCCccceeccCC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL------HNSCPVCRHEVPVS 293 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~ 293 (358)
.++..|+||++.+. .++.++|+|.||..||..|++. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 45789999999998 5677899999999999999987 67899999988653
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=103.25 Aligned_cols=48 Identities=25% Similarity=0.555 Sum_probs=43.0
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC-CCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN-SCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~ 292 (358)
++..|+||++.|. .++.++|+|.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4679999999999 788899999999999999998655 89999999865
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.08 E-value=1.7e-11 Score=93.81 Aligned_cols=50 Identities=32% Similarity=0.682 Sum_probs=43.4
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhc-------CCCCCccceeccC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL-------HNSCPVCRHEVPV 292 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~-------~~sCPvCR~~l~~ 292 (358)
+.++..|+||++.|. .++.++|+|.||..||..|++. ...||+||..+..
T Consensus 9 ~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345789999999998 5677899999999999999987 5679999998865
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.07 E-value=9.3e-11 Score=92.54 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=42.8
Q ss_pred cCCCccccccccccccCCccEEec-cCCeeChhhHHHHHhcC--CCCCccceecc
Q 018299 240 LANDTTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLH--NSCPVCRHEVP 291 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~ 291 (358)
+.++..|+||++.|. .++.++ |+|.||..||..|+..+ .+||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345789999999998 788999 99999999999999754 48999999873
No 35
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=1.9e-11 Score=105.97 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=44.1
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC-CCCccceeccCC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN-SCPVCRHEVPVS 293 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 293 (358)
.+...|+||++.|. .++.++|+|.||..||..|+.... +||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34679999999998 778899999999999999999765 799999998664
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=6.3e-11 Score=98.70 Aligned_cols=54 Identities=24% Similarity=0.654 Sum_probs=46.2
Q ss_pred CCccccccccccccC----CccEEeccCCeeChhhHHHHHhcCCCCCccceeccCCCC
Q 018299 242 NDTTCPVCKEEFKVG----GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSSA 295 (358)
Q Consensus 242 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 295 (358)
++..|+||++.|... ..++.++|+|.||..||..||+.+.+||+||+.+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 467999999999742 344899999999999999999999999999999876543
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=3.6e-11 Score=96.40 Aligned_cols=48 Identities=33% Similarity=0.658 Sum_probs=42.8
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
++..|+||++.|. .++.+ +|+|.||..||..|++.+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4679999999998 56677 899999999999999999999999998854
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=88.55 Aligned_cols=52 Identities=19% Similarity=0.507 Sum_probs=42.9
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcC--CCCCccceeccCCCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLH--NSCPVCRHEVPVSSA 295 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~~ 295 (358)
....|+||++.+..+... ..|+|.||..||.+||+.+ .+||+||.++..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 357999999999855422 2799999999999999987 789999999875543
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=7.7e-11 Score=84.78 Aligned_cols=43 Identities=35% Similarity=0.858 Sum_probs=37.0
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHh---cCCCCCcc
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR---LHNSCPVC 286 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~---~~~sCPvC 286 (358)
.++..|+||++.+. .++.++|+|.||..||..|++ ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45689999999998 567789999999999999954 45689998
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=5.2e-11 Score=104.20 Aligned_cols=49 Identities=29% Similarity=0.798 Sum_probs=42.4
Q ss_pred CCCccccccccccccCCccEEe-ccCCeeChhhHHHHHhc-CCCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRL-HNSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~ 292 (358)
.++..|+||++.|. .++.+ +|+|.||..||..|++. +.+||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34679999999998 46666 99999999999999997 6789999999854
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.5e-10 Score=84.42 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=40.7
Q ss_pred Ccccccccc-ccccCCc-cEEeccCCeeChhhHHHHHhcC-CCCCccceeccCC
Q 018299 243 DTTCPVCKE-EFKVGGE-ARELACKHIYHSECIVPWLRLH-NSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle-~~~~~~~-~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 293 (358)
+..|+||++ .+..... .+.++|+|.||..||..|+... .+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 578999999 7764332 2567999999999999997654 5799999988653
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.96 E-value=1.9e-10 Score=95.78 Aligned_cols=52 Identities=25% Similarity=0.694 Sum_probs=44.5
Q ss_pred CCccccccccccccC----CccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVG----GEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
+...|+||++.|... ...+.++|+|.||..||.+||+.+++||+||..+..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 467899999999742 2348889999999999999999999999999988543
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.4e-10 Score=93.05 Aligned_cols=49 Identities=29% Similarity=0.773 Sum_probs=42.5
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC---CCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN---SCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~---sCPvCR~~l~~~ 293 (358)
+...|+||++.+. .++.++|+|.||..||..|+..+. +||+||..+...
T Consensus 20 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3579999999998 566789999999999999998764 799999988654
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.95 E-value=2.6e-10 Score=94.44 Aligned_cols=50 Identities=28% Similarity=0.621 Sum_probs=44.0
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC-CCCccceeccC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN-SCPVCRHEVPV 292 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~ 292 (358)
+.++..|+||++.+. .++.++|+|.||..||..|++... +||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345789999999998 678899999999999999998876 89999998854
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=7.5e-11 Score=97.08 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=42.8
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhc-CCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL-HNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~ 292 (358)
++..|+||++.|. .++.++|+|.||..||..|++. ..+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4679999999998 7888999999999999999987 5689999998853
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.95 E-value=1.5e-10 Score=99.33 Aligned_cols=51 Identities=25% Similarity=0.559 Sum_probs=44.3
Q ss_pred ccCCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC-CCCccceeccC
Q 018299 239 HLANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN-SCPVCRHEVPV 292 (358)
Q Consensus 239 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~ 292 (358)
.+.++..|+||++.|. .++.++|+|.||..||..|++... +||+||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3456789999999998 678899999999999999998765 79999998744
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=6.1e-10 Score=87.39 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.+...|+||++.|. .++.++|||.|+..||..||..+.+||+|+..+..
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 34789999999999 88999999999999999999998999999998854
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.91 E-value=3.7e-10 Score=111.66 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=42.6
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHh-cCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLR-LHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~ 292 (358)
...|+||++.+. .++.+||+|.||..||..|+. .+.+||+||..+..
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 469999999997 788999999999999999999 67889999998854
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.90 E-value=8.1e-10 Score=89.46 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.+...|+||++.|. .++.++|||.|+..||..||..+.+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 34689999999999 88999999999999999999988899999998864
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.89 E-value=5.5e-10 Score=91.99 Aligned_cols=48 Identities=27% Similarity=0.728 Sum_probs=43.0
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhc-CCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL-HNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~ 292 (358)
++..|+||++.+. .++.++|+|.||..||..|++. ..+||+||..+..
T Consensus 22 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3679999999998 6778999999999999999997 6789999998854
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.89 E-value=1e-09 Score=88.53 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCccEEeccC-CeeChhhHHHHHhcCCCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACK-HIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.++..|+||++.|+ .++.++|+ |.|+..||..||..+.+||+||.+|..
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34789999999999 88999999 999999999999998899999998864
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.85 E-value=2e-09 Score=83.35 Aligned_cols=55 Identities=22% Similarity=0.483 Sum_probs=42.7
Q ss_pred cCCCccccccccccccCCccEEec--cCCeeChhhHHHHHhc-CCCCCccceeccCCCC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELA--CKHIYHSECIVPWLRL-HNSCPVCRHEVPVSSA 295 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lp--C~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~~ 295 (358)
+.++..|+||++.+...+ ++.+| |||.||..||..|++. ...||+||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 345789999999886433 33444 9999999999999854 4679999999876544
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=1.6e-09 Score=80.46 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=41.2
Q ss_pred CCccccccccccccCCccEEe--ccCCe-eChhhHHHHHhcCCCCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGGEAREL--ACKHI-YHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
++..|.||++.+. .++.+ ||+|. ||..|+..|++.+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4679999999987 55665 99999 899999999999999999999874
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.1e-09 Score=79.08 Aligned_cols=47 Identities=28% Similarity=0.615 Sum_probs=40.3
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVSS 294 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 294 (358)
+...|+||++.|. .++.|+|+|.||..||..| ...||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4678999999998 6788999999999999884 668999999886543
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.77 E-value=6e-10 Score=85.01 Aligned_cols=44 Identities=18% Similarity=0.591 Sum_probs=39.4
Q ss_pred CCccccccccccccCCccEEeccCCe-eChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHI-YHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
++..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4679999999988 7889999999 999999999 889999998753
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1e-09 Score=90.68 Aligned_cols=46 Identities=28% Similarity=0.702 Sum_probs=41.0
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
+...|+||++.|. .++.+ +|+|.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 4679999999998 67777 9999999999999998 789999998843
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=4e-09 Score=78.05 Aligned_cols=47 Identities=19% Similarity=0.534 Sum_probs=40.7
Q ss_pred CCccccccccccccCCccEEe--ccCCe-eChhhHHHHHhcCCCCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGGEAREL--ACKHI-YHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
.+..|.||++.+. ....+ ||+|. ||..|+..|.+....||+||.++.
T Consensus 6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3579999999877 45555 99998 999999999998889999999874
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=8.3e-09 Score=82.25 Aligned_cols=48 Identities=33% Similarity=0.736 Sum_probs=41.2
Q ss_pred CCCccccccccccccCCccEEec-cCCeeChhhHHHHHhcC------CCCCc--ccee-cc
Q 018299 241 ANDTTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLH------NSCPV--CRHE-VP 291 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~------~sCPv--CR~~-l~ 291 (358)
..+..|+||++.|. .++.++ |+|.|+..||..||..+ .+||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 35689999999999 788896 99999999999999864 48999 9866 53
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.65 E-value=9.5e-09 Score=90.04 Aligned_cols=50 Identities=28% Similarity=0.621 Sum_probs=43.7
Q ss_pred cCCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC-CCCccceeccC
Q 018299 240 LANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN-SCPVCRHEVPV 292 (358)
Q Consensus 240 ~~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~ 292 (358)
+.++..|+||++.|. .++.++|+|.||..||..|++... +||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 445789999999998 678899999999999999998754 89999998854
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=1.4e-08 Score=94.66 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=42.8
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcC-CCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLH-NSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~ 292 (358)
....|+||++.|. .+++++|||.||..||..||..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4689999999999 88999999999999999999874 459999998853
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.52 E-value=1.5e-08 Score=98.12 Aligned_cols=54 Identities=22% Similarity=0.562 Sum_probs=41.5
Q ss_pred CCcccccccccccc-CCccE----EeccCCeeChhhHHHHHhcC-----------CCCCccceeccCCCC
Q 018299 242 NDTTCPVCKEEFKV-GGEAR----ELACKHIYHSECIVPWLRLH-----------NSCPVCRHEVPVSSA 295 (358)
Q Consensus 242 ~~~~C~ICle~~~~-~~~~~----~lpC~H~FH~~CI~~WL~~~-----------~sCPvCR~~l~~~~~ 295 (358)
...+|+||++.+.. ++.+. ...|+|.||..||.+||+.. .+||+||.++....+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 45799999999886 32221 23699999999999999863 359999999976543
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.49 E-value=6.7e-08 Score=86.13 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcC-CCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLH-NSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~ 292 (358)
.+...|+||++.|. .++.++|||.|+..||..||..+ .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34689999999999 78999999999999999999874 469999998854
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=4.8e-08 Score=74.38 Aligned_cols=44 Identities=18% Similarity=0.589 Sum_probs=37.8
Q ss_pred CccccccccccccCCccEEeccCCe-eChhhHHHHHhcCCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHI-YHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
+..|+||++.+. .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 568999999988 7788999999 99999964 37899999988553
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=7.4e-08 Score=70.77 Aligned_cols=48 Identities=31% Similarity=0.758 Sum_probs=37.8
Q ss_pred CCccccccccccccCCccEEeccC--C---eeChhhHHHHHhc--CCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACK--H---IYHSECIVPWLRL--HNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~--H---~FH~~CI~~WL~~--~~sCPvCR~~l~~ 292 (358)
+...|.||+++. ++. ..+||. + .||..||..|+.. +.+||+|++++..
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 467999999974 333 368855 4 9999999999975 5679999998754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=9.8e-08 Score=71.69 Aligned_cols=45 Identities=31% Similarity=0.665 Sum_probs=39.0
Q ss_pred CCccccccccccccCCccEEeccCCe-eChhhHHHHHhcCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHI-YHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
++..|.||++.+. .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4679999999987 7899999999 99999984 47899999988553
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.38 E-value=4e-08 Score=75.98 Aligned_cols=44 Identities=34% Similarity=0.643 Sum_probs=38.6
Q ss_pred CCccccccccccccCCccEEeccCCe-eChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHI-YHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
++..|.||++.+. .++.+||+|. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3568999999988 7889999999 999999987 499999998854
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.32 E-value=1.6e-07 Score=69.17 Aligned_cols=49 Identities=6% Similarity=0.233 Sum_probs=43.0
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCCCCCccceeccCCC
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEVPVSS 294 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 294 (358)
...|+||++.++ .++.+ +|||.|...||.+||+.+.+||+++.+|..+.
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 368999999999 67788 89999999999999999889999999886543
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=2.3e-07 Score=73.55 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=38.1
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcC--------CCCCc--ccee
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLH--------NSCPV--CRHE 289 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~--------~sCPv--CR~~ 289 (358)
+..+|+||++++...+....++|+|.||..||..+++.. .+||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 357899999998754444444799999999999999742 25999 9987
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.6e-07 Score=85.00 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=41.3
Q ss_pred CCCccccccccccccCCccEE-eccCCeeChhhHHHHHhcC--CCCCc--cceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARE-LACKHIYHSECIVPWLRLH--NSCPV--CRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~-lpC~H~FH~~CI~~WL~~~--~sCPv--CR~~l~~ 292 (358)
.....|+||++.|. .++. +.|||.|+..||..|++.+ .+||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34789999999998 5665 5899999999999999875 36999 9998754
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.23 E-value=2.2e-07 Score=90.83 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=40.0
Q ss_pred CCCccccccccccccCCccEEeccCCe-eChhhHHHHHhcCCCCCccceeccC
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHI-YHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
.++..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 34689999999998 7889999999 999999988 789999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.86 E-value=8.8e-06 Score=65.35 Aligned_cols=45 Identities=27% Similarity=0.633 Sum_probs=37.5
Q ss_pred cccccccccccCCccEEeccCCeeChhhHHHHHhc-CCCCCccceecc
Q 018299 245 TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL-HNSCPVCRHEVP 291 (358)
Q Consensus 245 ~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~ 291 (358)
.|.+|--.+. ...+.+||+|+||.+|+..|.+. .++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888877766 36788899999999999999865 578999999873
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.62 E-value=2.5e-05 Score=72.42 Aligned_cols=50 Identities=20% Similarity=0.551 Sum_probs=41.4
Q ss_pred CccccccccccccCCccEEec-cCCeeChhhHHHHHhcCC--CCCccceeccCCCC
Q 018299 243 DTTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLHN--SCPVCRHEVPVSSA 295 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~~ 295 (358)
...|.||.+.+..| ...+ |+|.||..|+..|++.+. .||.|+..++....
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 56899999998854 3443 999999999999998765 79999999877643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.36 E-value=0.0064 Score=48.09 Aligned_cols=51 Identities=25% Similarity=0.519 Sum_probs=42.1
Q ss_pred CCccccccccccccCCccEEec-cCCeeChhhHHHHHhcCCCCCccceeccCCCCCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLHNSCPVCRHEVPVSSASS 297 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~~~ 297 (358)
.-..|..|+-..+ ..+. ..|..|..|+...|.....||+|.++|+.+-...
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 3578999998766 3444 5699999999999999999999999999876544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.26 E-value=0.086 Score=41.34 Aligned_cols=33 Identities=21% Similarity=0.584 Sum_probs=25.6
Q ss_pred CCccccccccccccCCccEE--eccCCeeChhhHHHH
Q 018299 242 NDTTCPVCKEEFKVGGEARE--LACKHIYHSECIVPW 276 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~--lpC~H~FH~~CI~~W 276 (358)
++..|.||++.+.. .++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 35789999986432 3344 889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.70 E-value=0.087 Score=38.91 Aligned_cols=45 Identities=22% Similarity=0.536 Sum_probs=32.8
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccceec
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHEV 290 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~l 290 (358)
....|.||.+. + +++.- .|...||..|+.+.|..-. .||.|....
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45789999753 2 33333 4999999999999887543 499997643
No 76
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=88.93 E-value=0.2 Score=34.46 Aligned_cols=36 Identities=17% Similarity=0.489 Sum_probs=25.6
Q ss_pred CeeeeeccCcceeecCC-CCCCccCCCCCCCceEEEc
Q 018299 30 PLYWCYQCHRAVRISST-NPSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 30 ~~YwCh~C~r~V~i~~~-~~~ei~CP~C~~gFvEEi~ 65 (358)
..|=|-.|.+++.-+-. ...+|.||+|+=..+..+-
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEEec
Confidence 46899999999885543 3458999999987776654
No 77
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=88.48 E-value=0.31 Score=39.79 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=26.9
Q ss_pred CCCeeeeeccCcceeecCCCCCCc-cCCCCCCCceEEEc
Q 018299 28 NYPLYWCYQCHRAVRISSTNPSEI-ACPRCSGHFVSEIE 65 (358)
Q Consensus 28 t~~~YwCh~C~r~V~i~~~~~~ei-~CP~C~~gFvEEi~ 65 (358)
....|||..|...+.+. .... .||.|++..++-+.
T Consensus 70 ~p~~~~C~~CG~~~e~~---~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPN---ALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp ECCEEECSSSSCEECSC---CSTTCCCSSSSSCCCEEEE
T ss_pred ccceEEcCCCCCEEeCC---CCCCCcCccccCCCcEEec
Confidence 46799999999988753 2246 89999999776543
No 78
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=88.25 E-value=0.27 Score=36.06 Aligned_cols=35 Identities=20% Similarity=0.535 Sum_probs=29.0
Q ss_pred CCeeeeeccCcceeecCCCCCCccCCCCCCCceEEEc
Q 018299 29 YPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 29 ~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEEi~ 65 (358)
.-.|-|-.|...|.+...+ .|.||+|+...+...-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~--~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKE--VIRCRECGHRVMYKMR 53 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSS--CCCCSSSCCCCCBCCC
T ss_pred CeEEECCCCCCeeecCCCC--ceECCCCCcEEEEEec
Confidence 5679999999999987544 4999999999887654
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.75 E-value=0.11 Score=37.58 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=33.6
Q ss_pred CCCccccccccccccCCccEEe-ccCCeeChhhHHHHHh-----cCCCCCcccee
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR-----LHNSCPVCRHE 289 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~-----~~~sCPvCR~~ 289 (358)
.+...|+||...+..+...+.- .|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3467899999887544433333 4999999999875432 23459999753
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.83 E-value=0.29 Score=35.31 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=31.4
Q ss_pred CCCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCcccee
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHE 289 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~ 289 (358)
..+..|.||... + .++.- .|...||..|+.+-|.... .||.|..+
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346799999873 2 23232 4999999999998654322 49999753
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.87 E-value=0.49 Score=36.61 Aligned_cols=32 Identities=25% Similarity=0.747 Sum_probs=23.3
Q ss_pred CCCccccccccccccCCccEEec---cCCeeChhhHHHH
Q 018299 241 ANDTTCPVCKEEFKVGGEARELA---CKHIYHSECIVPW 276 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lp---C~H~FH~~CI~~W 276 (358)
..+..|.||.- +..+ ..+| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 35889999963 2322 2344 8999999999996
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.69 E-value=0.3 Score=36.41 Aligned_cols=49 Identities=22% Similarity=0.481 Sum_probs=33.6
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhc----CCCCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRL----HNSCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~----~~sCPvCR~~l~ 291 (358)
+...|.||..... ++..+.- .|...||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3567999987643 3333333 49999999999876543 234999987764
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.69 E-value=0.44 Score=32.75 Aligned_cols=43 Identities=26% Similarity=0.609 Sum_probs=28.4
Q ss_pred cccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccce
Q 018299 245 TCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRH 288 (358)
Q Consensus 245 ~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~ 288 (358)
.|.||...-..+ ..+.- .|...||..|+.+=|.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998754322 23333 4999999999987554322 3999964
No 84
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=82.23 E-value=0.72 Score=38.82 Aligned_cols=36 Identities=19% Similarity=0.546 Sum_probs=26.4
Q ss_pred CCCeeeeeccCcceeecC-----------CC-------CCCccCCCCCCCceEE
Q 018299 28 NYPLYWCYQCHRAVRISS-----------TN-------PSEIACPRCSGHFVSE 63 (358)
Q Consensus 28 t~~~YwCh~C~r~V~i~~-----------~~-------~~ei~CP~C~~gFvEE 63 (358)
....+||..|...+.+.. .. ....+||.|++.-++-
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEV 120 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEE
Confidence 467999999999887644 10 0036899999998763
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=82.20 E-value=0.84 Score=49.72 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=43.6
Q ss_pred CCccccccccccccCCccEEeccC-CeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACK-HIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
+...|+|-++.+. .++++|.| +.|-..+|..||..+.+||+=|.+|...
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3578999999999 89999987 6999999999999999999999988643
No 86
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.09 E-value=0.53 Score=41.59 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=33.8
Q ss_pred CccccccccccccCCc---cEEe-ccCCeeChhhHHHH------Hh-----cCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGE---AREL-ACKHIYHSECIVPW------LR-----LHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~---~~~l-pC~H~FH~~CI~~W------L~-----~~~sCPvCR~~l 290 (358)
+..|+||...+..++. .+.. -|..+||..|+.-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4579999998887652 3444 39999999998531 11 145799998743
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.23 E-value=0.22 Score=35.23 Aligned_cols=45 Identities=29% Similarity=0.750 Sum_probs=30.4
Q ss_pred CCCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC----CCCccce
Q 018299 241 ANDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN----SCPVCRH 288 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~----sCPvCR~ 288 (358)
..+..|.||... ++-+.--.|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999874 22222224999999999997654322 3888854
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.35 E-value=0.9 Score=35.41 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=32.7
Q ss_pred CCCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccceec
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHEV 290 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~l 290 (358)
..+..|.||.+. + .+..- .|.-.||..|+.+=|..-. .||.|....
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 346799999864 2 23333 4999999999988665422 499998653
No 89
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=80.10 E-value=1 Score=34.57 Aligned_cols=34 Identities=26% Similarity=0.685 Sum_probs=25.9
Q ss_pred CCCeeeeeccCcceeecCCCCCCccCCCCCCCceE
Q 018299 28 NYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVS 62 (358)
Q Consensus 28 t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvE 62 (358)
....+||-.|...|..... ...+.||.|+..|--
T Consensus 22 ~~~~~wCP~C~~~~~~~~~-~~~v~C~~C~~~FC~ 55 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYERE-QLEATCPQCHQTFCV 55 (86)
T ss_dssp CCCEECCSSSCCCEECCCS-CSCEECTTTCCEECS
T ss_pred CCCEeECcCCCchheecCC-CCceEeCCCCCcccc
Confidence 4568899999998865443 345899999988864
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=80.05 E-value=0.39 Score=41.96 Aligned_cols=46 Identities=30% Similarity=0.662 Sum_probs=33.0
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~l~ 291 (358)
.+..|.||.+. |+ +... .|...||..|+.+-|.... .||.|+....
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 46789999854 33 3333 4999999999988776432 4999987543
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=79.61 E-value=0.2 Score=35.96 Aligned_cols=47 Identities=28% Similarity=0.722 Sum_probs=32.5
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC----CCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN----SCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~----sCPvCR~~l~ 291 (358)
.+..|.||... ++-+.--.|...||..|+.+-|.... .||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 46789999874 22222224999999999997655422 4999977654
No 92
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=79.48 E-value=1.3 Score=33.04 Aligned_cols=40 Identities=20% Similarity=0.496 Sum_probs=28.0
Q ss_pred cCCCCCCeeeeeccCcceeecCCCCCCccCCCCCCCceEEEc
Q 018299 24 GANRNYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 24 ~~~~t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEEi~ 65 (358)
+.....-.|=|-.|...+.+...+ .+.||+|+..-+...-
T Consensus 21 ~~~~~~v~Y~C~~CG~~~e~~~~d--~irCp~CG~RILyK~R 60 (70)
T 1twf_L 21 QARTATLKYICAECSSKLSLSRTD--AVRCKDCGHRILLKAR 60 (70)
T ss_dssp ----CCCCEECSSSCCEECCCTTS--TTCCSSSCCCCCBCCC
T ss_pred cCCCceEEEECCCCCCcceeCCCC--CccCCCCCceEeEecC
Confidence 333356789999999998876433 4899999996665544
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=79.21 E-value=0.49 Score=34.56 Aligned_cols=44 Identities=32% Similarity=0.757 Sum_probs=31.2
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCcccee
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHE 289 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~ 289 (358)
.+..|.||.+. + .++.- .|...||..|+.+-|.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 47899999864 2 33333 4999999999997554322 49999753
No 94
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.04 E-value=0.46 Score=34.24 Aligned_cols=45 Identities=31% Similarity=0.574 Sum_probs=30.7
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCC----CCCcccee
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN----SCPVCRHE 289 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~----sCPvCR~~ 289 (358)
.+..|.||.+. ++-+.--.|...||..|+.+-|.... .||.|...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 46789999863 22222224999999999997655422 49999764
No 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.54 E-value=0.82 Score=36.57 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=30.7
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcC----CCCCccc
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLH----NSCPVCR 287 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~----~sCPvCR 287 (358)
++..|.||.+.-+..+-+.--.|...||..||...+..- -.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 578999998764322223333599999999999876531 2377664
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.97 E-value=0.56 Score=33.97 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=33.1
Q ss_pred CCccccccccccccCC-ccEEe-ccCCeeChhhHHHHHhc-------CCCCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGG-EAREL-ACKHIYHSECIVPWLRL-------HNSCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~-~~~~l-pC~H~FH~~CI~~WL~~-------~~sCPvCR~~l~ 291 (358)
++..|.||.......+ .++.- .|...||..|+.+-|.. .=.|+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 4679999998643322 23232 49999999999875432 224999976443
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.85 E-value=1.7 Score=32.76 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=30.5
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHHh-----cCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR-----LHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~-----~~~sCPvCR~~l 290 (358)
...| ||...+..+...+.- .|...||..|+.--.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4566 898876533333343 4999999999863222 234699997643
No 98
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.67 E-value=2.3 Score=41.49 Aligned_cols=48 Identities=21% Similarity=0.537 Sum_probs=32.2
Q ss_pred CccccccccccccCCccEEeccCCeeChh--hHHHHHhcCC--CCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSE--CIVPWLRLHN--SCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~--CI~~WL~~~~--sCPvCR~~l~~ 292 (358)
...|+|-+..+. ..++-..|.|.-|.+ -+....+... .||+|.+.+..
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 478999888877 366666799995544 3333333333 49999987743
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=71.40 E-value=0.92 Score=40.39 Aligned_cols=46 Identities=30% Similarity=0.661 Sum_probs=32.5
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccceecc
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHEVP 291 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~l~ 291 (358)
.+..|.||... + .+... .|...||..|+.+-|.... .||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 46789999854 2 22222 3999999999988776432 4999987543
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.18 E-value=0.52 Score=36.87 Aligned_cols=48 Identities=25% Similarity=0.480 Sum_probs=32.7
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccceec
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHEV 290 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~l 290 (358)
++..|.||...-.. +.++.- .|...||..|+.+=|..-. .||.|....
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 46789999876432 223333 4999999999986554322 399998754
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.84 E-value=1.4 Score=35.46 Aligned_cols=45 Identities=29% Similarity=0.599 Sum_probs=29.5
Q ss_pred ccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCccce
Q 018299 244 TTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRH 288 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~ 288 (358)
..|.||.+.-...+.+..- .|...||..|+.+-|..-. .||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688887643222233333 4999999999987665422 4999974
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=69.24 E-value=3 Score=30.39 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=25.1
Q ss_pred CCccccccccccccCCccEEe--ccCCeeChhhHHH
Q 018299 242 NDTTCPVCKEEFKVGGEAREL--ACKHIYHSECIVP 275 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l--pC~H~FH~~CI~~ 275 (358)
....|.+|...+..+...+.- .|.-.||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 357899999988765555444 5999999999753
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=69.11 E-value=1.3 Score=35.00 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred ccccccccccccCCccEEeccCCeeChhhHHHHHhc---CCCCCccce
Q 018299 244 TTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRL---HNSCPVCRH 288 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~---~~sCPvCR~ 288 (358)
..| ||......+.-+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88776553332222249999999999764332 225999963
No 104
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=69.05 E-value=12 Score=29.21 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=36.7
Q ss_pred CccccccccccccCCc--c--EEeccCCeeChhhHHHHHhc-CCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVGGE--A--RELACKHIYHSECIVPWLRL-HNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~--~--~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 293 (358)
...|.||-+++..... + ...-|.--.|..|..-=.+. +..||-|+..+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 5799999998754432 1 22248888999998876554 55799999988643
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.77 E-value=1.8 Score=29.92 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=28.0
Q ss_pred cccccccccccCCccEEe--ccCCeeChhhHHHHH----hcCCCCCccc
Q 018299 245 TCPVCKEEFKVGGEAREL--ACKHIYHSECIVPWL----RLHNSCPVCR 287 (358)
Q Consensus 245 ~C~ICle~~~~~~~~~~l--pC~H~FH~~CI~~WL----~~~~sCPvCR 287 (358)
.|.||...+..+...+.- .|...||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 577888887544433333 488999999976322 2455698885
No 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.37 E-value=1.7 Score=32.32 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCcccccccccc-ccCCccEEe-ccCCeeChhhHHHHHhcCC--CCCcccee
Q 018299 241 ANDTTCPVCKEEF-KVGGEAREL-ACKHIYHSECIVPWLRLHN--SCPVCRHE 289 (358)
Q Consensus 241 ~~~~~C~ICle~~-~~~~~~~~l-pC~H~FH~~CI~~WL~~~~--sCPvCR~~ 289 (358)
.++..|.||.+.- ...+..+.- .|.-.||..|+.+-+.-.. .||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4578999998764 222233333 4999999999986432111 48888653
No 107
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=68.01 E-value=2.6 Score=35.92 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=23.3
Q ss_pred CCcCCCCCCeeeeeccCcceeecCCCCCCccCCCCCCC
Q 018299 22 GNGANRNYPLYWCYQCHRAVRISSTNPSEIACPRCSGH 59 (358)
Q Consensus 22 ~~~~~~t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~g 59 (358)
+.+..+++ .|.|+.|.+..... ....+||.|++.
T Consensus 124 ~i~~~~~~-~y~C~~Cg~~~~~~---~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 124 GIKKVIKW-RYVCIGCGRKFSTL---PPGGVCPDCGSK 157 (165)
T ss_dssp CCSSCCCC-CEEESSSCCEESSC---CGGGBCTTTCCB
T ss_pred hccccccE-EEECCCCCCcccCC---CCCCcCCCCCCc
Confidence 34444444 49999999876522 223599999997
No 108
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.70 E-value=2.3 Score=33.26 Aligned_cols=45 Identities=27% Similarity=0.553 Sum_probs=27.5
Q ss_pred CCccccccccccccCCccEEec--cC-CeeChhhHHHHHhc----CCCCCccceec
Q 018299 242 NDTTCPVCKEEFKVGGEARELA--CK-HIYHSECIVPWLRL----HNSCPVCRHEV 290 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lp--C~-H~FH~~CI~~WL~~----~~sCPvCR~~l 290 (358)
+...| ||..... ++-+.-=. |. .+||..||. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34677 9988643 32111113 55 689999997 433 22499997644
No 109
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=66.98 E-value=3.9 Score=31.16 Aligned_cols=33 Identities=12% Similarity=0.541 Sum_probs=25.4
Q ss_pred CeeeeeccCcceeecCCCCCCccCCCCCCCceEEEcc
Q 018299 30 PLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIEI 66 (358)
Q Consensus 30 ~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEEi~~ 66 (358)
--+.||.|-.... +.+-.+||.|++.=+.-+..
T Consensus 14 ~iLrC~aCf~~t~----~~~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 14 YILRCHGCFKTTS----DMNRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EEEECSSSCCEES----CSSCCSCSSSCCSCCEEEEC
T ss_pred eeeEecccceECC----CcccccccccCcccceEEEE
Confidence 4679999998654 33457999999988887764
No 110
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.76 E-value=1.6 Score=33.75 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCCcccccccccc-ccCCccEEe-ccCCeeChhhHHHHHhcCC--CCCccceeccC
Q 018299 241 ANDTTCPVCKEEF-KVGGEAREL-ACKHIYHSECIVPWLRLHN--SCPVCRHEVPV 292 (358)
Q Consensus 241 ~~~~~C~ICle~~-~~~~~~~~l-pC~H~FH~~CI~~WL~~~~--sCPvCR~~l~~ 292 (358)
.++..|.||...- ...+.++.- .|.-.||..|+.+-+.-.. .||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3568999998753 111222222 4999999999986432212 49999775543
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.47 E-value=1.8 Score=33.40 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=34.6
Q ss_pred CccccccccccccC-CccEEe-ccCCeeChhhHHHHHhc--------CCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVG-GEAREL-ACKHIYHSECIVPWLRL--------HNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~-~~~~~l-pC~H~FH~~CI~~WL~~--------~~sCPvCR~~l~~~ 293 (358)
+..|.||...-... +.++.- .|...||..|+.+-|.. .=.|+.|+......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 57899999763321 233333 49999999999986642 12599998866543
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=64.40 E-value=3 Score=33.25 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=33.6
Q ss_pred CccccccccccccCCccEEe--ccCCeeChhhHHHHHh----------cCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEAREL--ACKHIYHSECIVPWLR----------LHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l--pC~H~FH~~CI~~WL~----------~~~sCPvCR~~l 290 (358)
...|.||...+......+.- .|..+||..|+.--.. ..-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45799999988655444444 4999999999853210 233599998754
No 113
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.73 E-value=2.7 Score=31.19 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=27.2
Q ss_pred CCccccccccccccCCccEEe-c--cC-CeeChhhHHHHHhcC----CCCCccceec
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-A--CK-HIYHSECIVPWLRLH----NSCPVCRHEV 290 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-p--C~-H~FH~~CI~~WL~~~----~sCPvCR~~l 290 (358)
+...| ||..... ++ .+.- . |. ..||..||. |... -.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 35677 8987543 32 1111 3 65 699999998 4432 2499997644
No 114
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.65 E-value=4.1 Score=29.82 Aligned_cols=32 Identities=22% Similarity=0.563 Sum_probs=23.5
Q ss_pred CCCCCeeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 26 NRNYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 26 ~~t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
........|..|++.|.+. -+.| .|++-|--+
T Consensus 10 ~~k~~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLT-----GFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTT-----CEEC-SSSCEECTT
T ss_pred CCCCcCCcChhhCCccCcc-----CEEe-ecCCEeccc
Confidence 3345567899999988643 3799 799988643
No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=63.35 E-value=1.7 Score=37.37 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=31.6
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHh-----cCCCCCccceec
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR-----LHNSCPVCRHEV 290 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~-----~~~sCPvCR~~l 290 (358)
+...| ||......+...+.- .|..+||..|+..-.. ..-.||.|+..-
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 35688 998876533333343 4999999999953221 233699998753
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.91 E-value=1.3 Score=38.93 Aligned_cols=44 Identities=30% Similarity=0.648 Sum_probs=30.8
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCC----CCCcccee
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN----SCPVCRHE 289 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~----sCPvCR~~ 289 (358)
+..|.||.+. ++-+..-.|...||..|+.+=|.... .||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5689999854 33333335999999999987554322 49999875
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.59 E-value=1.3 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=30.6
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHHh----cCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR----LHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~----~~~sCPvCR~~l 290 (358)
...| ||......++..+.- .|...||..|+.--.. ..-.||.|+...
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4578 798776544433333 4999999999865321 233599997643
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.53 E-value=1.9 Score=32.07 Aligned_cols=46 Identities=17% Similarity=0.404 Sum_probs=29.7
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHH---------hcCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWL---------RLHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL---------~~~~sCPvCR~~l 290 (358)
...| ||...... ...+.- .|...||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 89887652 222332 499999999985321 2356799997643
No 119
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=62.36 E-value=4.3 Score=39.43 Aligned_cols=48 Identities=21% Similarity=0.537 Sum_probs=32.7
Q ss_pred CccccccccccccCCccEEeccCCe--eChhhHHHHHhcCC--CCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHI--YHSECIVPWLRLHN--SCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~--FH~~CI~~WL~~~~--sCPvCR~~l~~ 292 (358)
...|+|-+..+. ..++-..|.|. |-..-+....+... .||+|.+.+..
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 468999888877 35666679999 44444444434444 49999998754
No 120
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.23 E-value=5.6 Score=29.88 Aligned_cols=30 Identities=23% Similarity=0.703 Sum_probs=23.0
Q ss_pred CCCeeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 28 NYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 28 t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
......|+.|++.|.+. -+.| +|++-|--+
T Consensus 22 k~~~~RC~~C~kkvgL~-----~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT-----GFKC-RCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTT-----CEEC-TTSCEECTT
T ss_pred cccCccchhhcCccccc-----ceEe-ccCCEeccc
Confidence 34568999999988644 3799 899988643
No 121
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.02 E-value=4.7 Score=29.49 Aligned_cols=30 Identities=23% Similarity=0.746 Sum_probs=22.5
Q ss_pred CCCeeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 28 NYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 28 t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
......|..|++.|.+. -+.| +|++-|--.
T Consensus 12 ~~~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVM-----GFKC-KCGSTFCGS 41 (64)
T ss_dssp SCCSCSCTTTCCCCTTS-----CEEC-TTSCEECSS
T ss_pred CCcCCcChhhCCccccc-----CeEe-ecCCEeccc
Confidence 33457899999987643 3799 999998754
No 122
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.44 E-value=10 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCccccccccccc-----cCCccEEe-ccCCeeChhhHH
Q 018299 242 NDTTCPVCKEEFK-----VGGEAREL-ACKHIYHSECIV 274 (358)
Q Consensus 242 ~~~~C~ICle~~~-----~~~~~~~l-pC~H~FH~~CI~ 274 (358)
....|.+|+..-. .+++++.- .|...||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4678999987531 12233333 499999999995
No 123
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.24 E-value=13 Score=28.35 Aligned_cols=39 Identities=28% Similarity=0.702 Sum_probs=27.6
Q ss_pred CCCcCCCCCCeeeeeccCcceeecC--------------CCCCCccCCCCCCC
Q 018299 21 NGNGANRNYPLYWCYQCHRAVRISS--------------TNPSEIACPRCSGH 59 (358)
Q Consensus 21 ~~~~~~~t~~~YwCh~C~r~V~i~~--------------~~~~ei~CP~C~~g 59 (358)
-|.++|..+..|-|-.|.-....+. ..+.+.+||.|+-+
T Consensus 17 ~g~~~~~em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 17 QGPGSMNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCCCCSSCCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred cCCcCCCCcceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 3455788899999999997655321 12346799999873
No 124
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=58.27 E-value=6 Score=30.32 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=30.1
Q ss_pred CccccccccccccCCccEEec--cCCeeChhhHHHHHhcC
Q 018299 243 DTTCPVCKEEFKVGGEARELA--CKHIYHSECIVPWLRLH 280 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lp--C~H~FH~~CI~~WL~~~ 280 (358)
...|.+|.+.+++. .-++.| =.|.||..|-...++.+
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhc
Confidence 57899999999843 456666 57999999999999863
No 125
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=57.80 E-value=1.5 Score=33.14 Aligned_cols=26 Identities=35% Similarity=0.760 Sum_probs=19.3
Q ss_pred ccCCeeChhhHHHHHhcC-----CCCCccce
Q 018299 263 ACKHIYHSECIVPWLRLH-----NSCPVCRH 288 (358)
Q Consensus 263 pC~H~FH~~CI~~WL~~~-----~sCPvCR~ 288 (358)
.|...||..|+.+-|... =.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 499999999999866542 24888875
No 126
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.10 E-value=2.6 Score=31.13 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=23.8
Q ss_pred CCCCeeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 27 RNYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 27 ~t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
..-....|..|++.|.+.... .+.| +|++-|--.
T Consensus 11 ~~~~~~rC~~C~kk~gL~~~e--gf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKLELVQQE--LGSC-RCGYVFCML 44 (67)
T ss_dssp SCSCTTBCSSSCCBCCHHHHH--HHCC-SSSCCCCTT
T ss_pred CCccCCcchhhCCeecccccC--ceEe-cCCCEehhc
Confidence 334557899999988755321 1689 999998643
No 127
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.63 E-value=2.5 Score=31.74 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=29.5
Q ss_pred CccccccccccccCCccEEe--ccCCeeChhhHHHHHh---------cCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEAREL--ACKHIYHSECIVPWLR---------LHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l--pC~H~FH~~CI~~WL~---------~~~sCPvCR~~l 290 (358)
...| ||-.....+.-+.-- .|..+||..|+.---. .+-.||.|+...
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4577 898874433222222 5999999999864222 234599997643
No 128
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=54.90 E-value=2.2 Score=33.26 Aligned_cols=42 Identities=19% Similarity=0.492 Sum_probs=25.2
Q ss_pred CCccccccccccccCCccEEe-ccC---CeeChhhHHHHHhc----CCCCCc-cce
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACK---HIYHSECIVPWLRL----HNSCPV-CRH 288 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~---H~FH~~CI~~WL~~----~~sCPv-CR~ 288 (358)
+...| ||..... ++ .+.- .|. ..||..||. |.. .-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34577 9987432 32 2222 344 799999996 332 224999 974
No 129
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.68 E-value=9.4 Score=30.56 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCccccccccccccCCccEEe---ccCCeeChhhHHHHHhcCC----CCCccceeccCCC
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL---ACKHIYHSECIVPWLRLHN----SCPVCRHEVPVSS 294 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l---pC~H~FH~~CI~~WL~~~~----sCPvCR~~l~~~~ 294 (358)
.++..|.||.+. + .++.- .|-..||..|+. |.... .||.|...+..+.
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 457889999842 2 33333 388999999997 54422 3888876555443
No 130
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.83 E-value=2.6 Score=31.74 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=28.0
Q ss_pred ccccccccccccCCccEEe-ccCCeeChhhHHHHHhcC-----CCCCccce
Q 018299 244 TTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLH-----NSCPVCRH 288 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~-----~sCPvCR~ 288 (358)
-.|.||...-.. ..++.- .|...||..|+.+=|... =.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378888764222 233333 499999999998755431 24888854
No 131
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=51.89 E-value=2.6 Score=31.09 Aligned_cols=43 Identities=26% Similarity=0.571 Sum_probs=26.2
Q ss_pred cccccccccccCCccEEe-ccCCeeChhhHHHHHhcC-----CCCCccce
Q 018299 245 TCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLH-----NSCPVCRH 288 (358)
Q Consensus 245 ~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~-----~sCPvCR~ 288 (358)
.|.||...-.. ..++.- .|...||..|+.+=|... =.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677653221 123222 499999999998755432 24888864
No 132
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.38 E-value=12 Score=31.46 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCccEEe-ccCCeeChhhHHHHHh---------c--CCCCCccce
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR---------L--HNSCPVCRH 288 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~---------~--~~sCPvCR~ 288 (358)
..+..|.||.+.=+ +... .|-..||..||.+-|. . .=.||+|+.
T Consensus 61 g~~d~C~vC~~GG~----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSS----EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCc----EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34789999987532 3333 4999999999998763 1 124999964
No 133
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=51.29 E-value=4.5 Score=31.34 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=18.2
Q ss_pred eeecCCCCCCccCCCCCCCceEEEc
Q 018299 41 VRISSTNPSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 41 V~i~~~~~~ei~CP~C~~gFvEEi~ 65 (358)
|-|.-..+.+++||||+--|+.+=.
T Consensus 39 VyL~i~~~g~~~CpYCg~~y~~~~~ 63 (87)
T 2jz8_A 39 IFIDMGSTDEKICPYCSTLYRYDPS 63 (87)
T ss_dssp CEEECTTCCEECCTTTCCEEECCTT
T ss_pred EEEEcCCCCeEECCCCCCEeEcCCC
Confidence 4444444568999999999987643
No 134
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=50.93 E-value=9.9 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=29.5
Q ss_pred CCCCCCcCCCCCCeeeeeccCcceeecCC---------CCCCccCCCCCCCceEE
Q 018299 18 GDGNGNGANRNYPLYWCYQCHRAVRISST---------NPSEIACPRCSGHFVSE 63 (358)
Q Consensus 18 ~~~~~~~~~~t~~~YwCh~C~r~V~i~~~---------~~~ei~CP~C~~gFvEE 63 (358)
+..++.........|-|..|.+....... ......|+.|+..|...
T Consensus 4 ~s~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 58 (106)
T 2ee8_A 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ 58 (106)
T ss_dssp CCCCCCCCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCH
T ss_pred CCCCCcCCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCH
Confidence 33344444556778999999986643211 12247999999888643
No 135
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.63 E-value=2.7 Score=29.92 Aligned_cols=42 Identities=29% Similarity=0.632 Sum_probs=25.8
Q ss_pred CCccccccccccccCCccEEe-c--cC-CeeChhhHHHHHhcC----CCCCccce
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-A--CK-HIYHSECIVPWLRLH----NSCPVCRH 288 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-p--C~-H~FH~~CI~~WL~~~----~sCPvCR~ 288 (358)
+...| ||..... + ..+.- . |. ..||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 9987642 2 22221 3 65 699999998 4332 24999864
No 136
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=48.90 E-value=5.3 Score=30.46 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=14.7
Q ss_pred CCCccCCCCCCCceEEEc
Q 018299 48 PSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 48 ~~ei~CP~C~~gFvEEi~ 65 (358)
...+.||||+--|+.+-.
T Consensus 51 ~g~~~CpYCg~~f~l~~~ 68 (80)
T 2jvm_A 51 TGFVECGYCDRRYIHESF 68 (80)
T ss_dssp TCEEECSSSSCEEEEHHH
T ss_pred CCeEECCCCCCEEEecCC
Confidence 457899999999997643
No 137
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.35 E-value=4.3 Score=36.89 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=25.9
Q ss_pred ccccccccccccCCccEEe-ccCCeeChhhHHHHHhcC-----CCCCccce
Q 018299 244 TTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLH-----NSCPVCRH 288 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~-----~sCPvCR~ 288 (358)
..|.||...-..+ ..... .|...||..|+.+=|... =.||.|+.
T Consensus 175 c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887642222 33333 499999999999765431 24999965
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.91 E-value=25 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.576 Sum_probs=25.7
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHH
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPW 276 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~W 276 (358)
++..|.+|...|..-..-... .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357999999999754433444 39999999986543
No 139
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=47.55 E-value=3.2 Score=29.58 Aligned_cols=41 Identities=29% Similarity=0.657 Sum_probs=24.9
Q ss_pred CccccccccccccCCccEEe-c--cC-CeeChhhHHHHHhcC----CCCCccce
Q 018299 243 DTTCPVCKEEFKVGGEAREL-A--CK-HIYHSECIVPWLRLH----NSCPVCRH 288 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-p--C~-H~FH~~CI~~WL~~~----~sCPvCR~ 288 (358)
...| ||..... + ..+.- . |. ..||..|+. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4566 8987632 2 22221 3 55 689999998 4432 24998864
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.21 E-value=14 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.481 Sum_probs=23.7
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHH
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVP 275 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~ 275 (358)
+..|.+|...|..-..--.- .||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 45899999999843322333 4999999999643
No 141
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.06 E-value=14 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.646 Sum_probs=24.7
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHH
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPW 276 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~W 276 (358)
...|.+|...|..-..--.- .||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 45899999999854333333 49999999997643
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.62 E-value=1.7 Score=35.05 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=30.2
Q ss_pred ccccccccccccCCccEEeccCCeeChhhHHHHHhcCC----CCCccceecc
Q 018299 244 TTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHN----SCPVCRHEVP 291 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~----sCPvCR~~l~ 291 (358)
..|.||...-..++.+.--.|...||..|+.+=|.... .||.|...+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 36888877533222222224999999999997554322 3998876553
No 143
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=45.61 E-value=14 Score=28.28 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=25.9
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHH
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWL 277 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL 277 (358)
...|.+|...|..-..-... .||++||..|...++
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 46899999999854433333 499999999976654
No 144
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=45.59 E-value=15 Score=28.34 Aligned_cols=28 Identities=21% Similarity=0.844 Sum_probs=21.2
Q ss_pred eeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 31 LYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 31 ~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
...|+.|++.|.+.. -+.| .|++-|--.
T Consensus 25 ~~rC~~C~kkvgl~~----~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLAT----SFEC-RCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSS----CEEC-TTCCEECTT
T ss_pred CccchhhCCeecccC----CeEc-CCCCEeccc
Confidence 478999999887542 3799 599988643
No 145
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.06 E-value=14 Score=30.19 Aligned_cols=33 Identities=24% Similarity=0.567 Sum_probs=24.3
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHH
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVP 275 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~ 275 (358)
...|.+|...|..-..-..- .||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45899999999854333333 4999999999654
No 146
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.96 E-value=15 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=25.3
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHH
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPW 276 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~W 276 (358)
...|.+|...|..-..--.- .|+++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 46899999999854433333 49999999997654
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=44.55 E-value=11 Score=27.21 Aligned_cols=37 Identities=22% Similarity=0.604 Sum_probs=18.5
Q ss_pred cccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 245 TCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 245 ~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
.|+.|...+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 2 ~C~~C~~~I~~~~~v~a--~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS--LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE--TTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE--CCccccCCC--------CCccccCccCC
Confidence 35556555543333222 255566554 44666665553
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.02 E-value=14 Score=26.62 Aligned_cols=40 Identities=18% Similarity=0.500 Sum_probs=30.7
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|+.|.+.+..++.+ ..-+..||..| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccCC
Confidence 46899999988866543 34578899877 679999998854
No 149
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.92 E-value=3.1 Score=33.10 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=27.9
Q ss_pred cccccccccccCCccEEe-ccCCeeChhhHHHHHhcCC----CCCcccee
Q 018299 245 TCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHN----SCPVCRHE 289 (358)
Q Consensus 245 ~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~----sCPvCR~~ 289 (358)
.|.||...-.. +.+..- .|...||..|+.+=|.... .||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765332 122222 4999999999987554322 48888653
No 150
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.90 E-value=3.8 Score=33.62 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=31.7
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHHhcCCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRLHNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l 290 (358)
...|.+|...|..-..--.. .||.+||..|..........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 46899999999753333333 4999999999777665566688885544
No 151
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.23 E-value=29 Score=25.80 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
....|..|.+.+.. . .+..-+..||..| ..|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~--~-~~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--A-VVKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS--C-CEESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc--c-EEEECCceECccC--------CEecCCCCCCCC
Confidence 35689999998873 2 2344678999887 679999988854
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.10 E-value=30 Score=30.95 Aligned_cols=35 Identities=23% Similarity=0.609 Sum_probs=25.8
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHH
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPW 276 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~W 276 (358)
++..|.+|...|..-..-... .||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 357999999999854333333 49999999997654
No 153
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.82 E-value=18 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.359 Sum_probs=33.1
Q ss_pred CCccccccccccccCCccEEe-ccCCeeChhhHHHHHhc-------CCCCCccceeccC
Q 018299 242 NDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLRL-------HNSCPVCRHEVPV 292 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~~-------~~sCPvCR~~l~~ 292 (358)
+...|.+|...|..-..--.- .|+.+||..|....+.. ...|-.|-..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 356899999999854322233 49999999997654321 1237777665543
No 154
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.61 E-value=18 Score=27.17 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=23.1
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHH
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIV 274 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~ 274 (358)
...|.+|...|..-..--.- .|+.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 46899999999754332333 499999998843
No 155
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=40.61 E-value=22 Score=29.36 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=29.7
Q ss_pred CCCccccccccccccCCccEEe-ccCCeeChhhHHHHH------hc-C----CCCCccce
Q 018299 241 ANDTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWL------RL-H----NSCPVCRH 288 (358)
Q Consensus 241 ~~~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL------~~-~----~sCPvCR~ 288 (358)
..+..|.||.+.=+ +..- .|-..||..||.+-| +. + =.|++|+-
T Consensus 55 g~~~~C~vC~dGG~----LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSE----EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCe----eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34678999987522 2222 499999999999852 21 1 25999954
No 156
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.38 E-value=13 Score=25.81 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=26.3
Q ss_pred CcCCCCCCeeeeeccCcceeecCC---------CCCCccCCCCCCCceE
Q 018299 23 NGANRNYPLYWCYQCHRAVRISST---------NPSEIACPRCSGHFVS 62 (358)
Q Consensus 23 ~~~~~t~~~YwCh~C~r~V~i~~~---------~~~ei~CP~C~~gFvE 62 (358)
.+.......|-|..|.+....... ...-+.|+.|+..|..
T Consensus 6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 444455678999999986542111 1223799999988864
No 157
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.66 E-value=21 Score=26.33 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=29.9
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|..|-..+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 5689999998876654443 467899877 67999998885
No 158
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=38.25 E-value=6.7 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=14.1
Q ss_pred CCCccCCCCCCCceEEE
Q 018299 48 PSEIACPRCSGHFVSEI 64 (358)
Q Consensus 48 ~~ei~CP~C~~gFvEEi 64 (358)
...+.||||+--|+.+-
T Consensus 38 ~g~~~CpYCg~~f~l~~ 54 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLKG 54 (67)
T ss_dssp TSEEEETTTTEEEEETT
T ss_pred CCeEECCCCCCEEEECC
Confidence 45689999999998764
No 159
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.05 E-value=18 Score=30.03 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=23.8
Q ss_pred CCccccccccccc-cCCccEE-eccCCeeChhhHHH
Q 018299 242 NDTTCPVCKEEFK-VGGEARE-LACKHIYHSECIVP 275 (358)
Q Consensus 242 ~~~~C~ICle~~~-~~~~~~~-lpC~H~FH~~CI~~ 275 (358)
.+..|.+|...|. .+..... .-|+|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 4689999999994 3333333 34999999888553
No 160
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.87 E-value=19 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.587 Sum_probs=22.7
Q ss_pred CCCCeeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 27 RNYPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 27 ~t~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
.......|+.|++.|.+.+ +.|. |++-|.-.
T Consensus 21 ~k~~~nRC~~CrKkvgL~g-----f~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 21 PKPKKNRCFMCRKKVGLTG-----FDCR-CGNLFCGL 51 (74)
T ss_dssp CCSCTTBCSSSCCBCGGGC-----EECT-TSCEECSS
T ss_pred CCCcCCcChhhCCcccccC-----eecC-CCCEechh
Confidence 3445668999999887542 7999 99877643
No 161
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.35 E-value=2.8 Score=30.19 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=31.6
Q ss_pred ccCCCcccccccc-ccccCCccEEeccCCeeChhhHHHHHhcCCC----CCccce
Q 018299 239 HLANDTTCPVCKE-EFKVGGEARELACKHIYHSECIVPWLRLHNS----CPVCRH 288 (358)
Q Consensus 239 ~~~~~~~C~ICle-~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~s----CPvCR~ 288 (358)
+..+...|.||+. .|.++---.-.-|+-.||..|-..|-...+. |-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3445789999987 5665443344458888888886666433332 666664
No 162
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.27 E-value=17 Score=29.05 Aligned_cols=33 Identities=18% Similarity=0.504 Sum_probs=23.2
Q ss_pred CCeeeeeccCcceeecCCCCCCccCCCCCCCceEE
Q 018299 29 YPLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSE 63 (358)
Q Consensus 29 ~~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEE 63 (358)
...|-|-.|.-... .....-..||.|.+..||+
T Consensus 65 v~p~~C~~CG~~F~--~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK--AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCC--CCSSCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeec--ccCCCCCCCcCCCCCccCC
Confidence 45688999997652 1111236999999998876
No 163
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.39 E-value=32 Score=27.34 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=22.2
Q ss_pred ccccccccccc----cC--CccEEe-ccCCeeChhhHHHH
Q 018299 244 TTCPVCKEEFK----VG--GEAREL-ACKHIYHSECIVPW 276 (358)
Q Consensus 244 ~~C~ICle~~~----~~--~~~~~l-pC~H~FH~~CI~~W 276 (358)
..|.||+..-. .+ +..+.- .|...||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 11 233333 49999999999765
No 164
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.36 E-value=11 Score=27.06 Aligned_cols=42 Identities=29% Similarity=0.552 Sum_probs=28.1
Q ss_pred ccccccccccccCCccEEec-cCCeeChhhHHHHHhcCCCCCcc
Q 018299 244 TTCPVCKEEFKVGGEARELA-CKHIYHSECIVPWLRLHNSCPVC 286 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvC 286 (358)
..|-.|...|... ....-+ |++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998622 112334 99999999955433333469987
No 165
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.01 E-value=35 Score=24.67 Aligned_cols=41 Identities=17% Similarity=0.526 Sum_probs=29.9
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|..|...+..++.++ ..=+..||..| .+|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccCC
Confidence 368999999887655433 33577899877 679999888754
No 166
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=33.04 E-value=12 Score=26.10 Aligned_cols=26 Identities=31% Similarity=0.741 Sum_probs=19.3
Q ss_pred eeeccCcceeecCC--C------------CCCccCCCCCC
Q 018299 33 WCYQCHRAVRISST--N------------PSEIACPRCSG 58 (358)
Q Consensus 33 wCh~C~r~V~i~~~--~------------~~ei~CP~C~~ 58 (358)
.|+.|++.|++... . .-+++||.|..
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 59999999998532 1 23689999974
No 167
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.80 E-value=40 Score=23.70 Aligned_cols=40 Identities=25% Similarity=0.651 Sum_probs=26.3
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|..|...+...+.. +..=+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccC--------CcccccCCcCC
Confidence 45788888876643322 223467888776 56888888773
No 168
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.46 E-value=31 Score=25.67 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=29.2
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|..|...+. ++ .+..-+..||..| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccC--------CccCCCCCCCCC
Confidence 568999999885 33 3345678999877 679999988864
No 169
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.34 E-value=29 Score=25.20 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=29.1
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|..|...+.. + .+..-+..||..| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCc--------CeeCCCCCCCC
Confidence 5689999998773 2 3444678999887 57999998885
No 170
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.15 E-value=32 Score=25.31 Aligned_cols=41 Identities=22% Similarity=0.507 Sum_probs=30.6
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
...|..|...+...+.+. .-+..||..| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 468999999887555443 4577899887 6789999888543
No 171
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.02 E-value=17 Score=28.71 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=10.7
Q ss_pred eChhhHHHHHhc
Q 018299 268 YHSECIVPWLRL 279 (358)
Q Consensus 268 FH~~CI~~WL~~ 279 (358)
||..|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 172
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.84 E-value=18 Score=28.74 Aligned_cols=12 Identities=25% Similarity=0.916 Sum_probs=10.8
Q ss_pred eChhhHHHHHhc
Q 018299 268 YHSECIVPWLRL 279 (358)
Q Consensus 268 FH~~CI~~WL~~ 279 (358)
||..|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 173
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.60 E-value=48 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.462 Sum_probs=29.1
Q ss_pred Ccccccccccccc--CCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKV--GGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~--~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|..|...+.. .+.. +..-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCC
Confidence 4689999998874 2233 334678899877 57999998885
No 174
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.23 E-value=38 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.466 Sum_probs=28.7
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|..|...+...+..+ ..-+..||..| ..|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM-EYKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE-EETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEE-EECcCeecccC--------CcccccCCccCC
Confidence 358999999887544332 23567888776 668899887753
No 175
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=31 Score=24.27 Aligned_cols=41 Identities=20% Similarity=0.496 Sum_probs=28.9
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|..|...+...+. ++..-+..||..| ..|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc-EEEECccccCccc--------CeECCCCCcCCC
Confidence 4589999988875433 2334577889876 568899888754
No 176
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.24 E-value=44 Score=23.30 Aligned_cols=38 Identities=26% Similarity=0.676 Sum_probs=27.9
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|..|...+.. + .+..-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-G--GVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-S--EEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-c--eEEECccccCCCC--------CccCCCCCcCC
Confidence 4579999988762 2 2445678899877 56899998884
No 177
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.62 E-value=18 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=21.7
Q ss_pred eeeeeccCc-ceeecCCCCCCccCCCCCCCceEEE
Q 018299 31 LYWCYQCHR-AVRISSTNPSEIACPRCSGHFVSEI 64 (358)
Q Consensus 31 ~YwCh~C~r-~V~i~~~~~~ei~CP~C~~gFvEEi 64 (358)
.+-|-.|.. .+..-. ...+++|+.|+--|-|++
T Consensus 5 ~~~CP~C~~~~l~~d~-~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACESAELIYDP-ERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSCCCEEEET-TTTEEEESSSCCBCCCCC
T ss_pred cEeCcCCCCcceEEcC-CCCeEECcccCCcccccc
Confidence 567999987 444322 335799999976665544
No 178
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.59 E-value=25 Score=25.55 Aligned_cols=41 Identities=22% Similarity=0.474 Sum_probs=29.6
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
...|..|...+..++. +..-+..||..| ..|-.|...|...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCccccccc--------CccCCCCCCCCCC
Confidence 4689999998876553 334678899877 5688999888543
No 179
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.35 E-value=64 Score=20.83 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=22.7
Q ss_pred CCCCeeeeeccCcceeecC----------CCCCCccCCCCCCCce
Q 018299 27 RNYPLYWCYQCHRAVRISS----------TNPSEIACPRCSGHFV 61 (358)
Q Consensus 27 ~t~~~YwCh~C~r~V~i~~----------~~~~ei~CP~C~~gFv 61 (358)
.....|-|-.|.+...-.. ...-...|+.|+..|-
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3456799999987543210 1122379999999884
No 180
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.89 E-value=29 Score=24.25 Aligned_cols=38 Identities=24% Similarity=0.543 Sum_probs=25.3
Q ss_pred CCCCCCeeeeeccCcceeecCC---------CCCCccCCCCCCCceE
Q 018299 25 ANRNYPLYWCYQCHRAVRISST---------NPSEIACPRCSGHFVS 62 (358)
Q Consensus 25 ~~~t~~~YwCh~C~r~V~i~~~---------~~~ei~CP~C~~gFvE 62 (358)
.......|-|..|.+....... ...-..|+.|+..|..
T Consensus 12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 3445678999999987653211 1123789999988864
No 181
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.64 E-value=46 Score=23.77 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=29.0
Q ss_pred Ccccccccccccc-CCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKV-GGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~-~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|+.|...+.. ++...+..-+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 4589999998774 12223444678899887 67999988885
No 182
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=27.53 E-value=57 Score=23.43 Aligned_cols=34 Identities=26% Similarity=0.648 Sum_probs=29.5
Q ss_pred CccccccccccccCCccEEec-cCCeeChh-hHHHH
Q 018299 243 DTTCPVCKEEFKVGGEARELA-CKHIYHSE-CIVPW 276 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lp-C~H~FH~~-CI~~W 276 (358)
...|.-|...+..|..+..-. .-|.||.. ||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 569999999999999888887 99999976 88775
No 183
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=27.32 E-value=23 Score=25.74 Aligned_cols=44 Identities=27% Similarity=0.492 Sum_probs=28.3
Q ss_pred CccccccccccccCCccEEe-ccCCeeChhhHHHHHh---cCCCCCccce
Q 018299 243 DTTCPVCKEEFKVGGEAREL-ACKHIYHSECIVPWLR---LHNSCPVCRH 288 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-pC~H~FH~~CI~~WL~---~~~sCPvCR~ 288 (358)
...| ||..... ++..+.- .|..+||..|+..-.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4678 9987654 3333333 4999999999864322 1235888864
No 184
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.28 E-value=49 Score=23.52 Aligned_cols=41 Identities=27% Similarity=0.661 Sum_probs=29.7
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|+.|...+...+.++. .-+..||..| ..|-.|...|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCC
Confidence 5689999998875444432 3467889877 678899888754
No 185
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.22 E-value=38 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=23.8
Q ss_pred CCccccccccccccCCccEEecc-CCeeChhhHHH
Q 018299 242 NDTTCPVCKEEFKVGGEARELAC-KHIYHSECIVP 275 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~~~~~lpC-~H~FH~~CI~~ 275 (358)
+..-|.||.++- .++-+.| +-+||..|...
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHH
Confidence 456899999983 4777889 88999999555
No 186
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.58 E-value=42 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.593 Sum_probs=22.4
Q ss_pred CCCCCCeeeeeccCcceeecC--------------CCCCCccCCCCCCC
Q 018299 25 ANRNYPLYWCYQCHRAVRISS--------------TNPSEIACPRCSGH 59 (358)
Q Consensus 25 ~~~t~~~YwCh~C~r~V~i~~--------------~~~~ei~CP~C~~g 59 (358)
....+..|-|-.|.-...-.. ..+.+.+||.|+-+
T Consensus 29 ~~~~m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 29 GGKAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp ---CCCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred cccCCceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 334578999999997555321 12346799999863
No 187
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.56 E-value=14 Score=35.82 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred CccccccccccccCCccEE-eccCCeeChhhHHHHHhc-------CCCCCccceec
Q 018299 243 DTTCPVCKEEFKVGGEARE-LACKHIYHSECIVPWLRL-------HNSCPVCRHEV 290 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~-lpC~H~FH~~CI~~WL~~-------~~sCPvCR~~l 290 (358)
...|.+|...|..-..-.. -.||++||..|-..++.. ...|-.|-..|
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4689999999874322222 249999999998776522 22477775544
No 188
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.53 E-value=34 Score=28.97 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCcccccccccccc--CCccEEeccCCeeChhhHHHHHhcCC--CCCcccee
Q 018299 242 NDTTCPVCKEEFKV--GGEARELACKHIYHSECIVPWLRLHN--SCPVCRHE 289 (358)
Q Consensus 242 ~~~~C~ICle~~~~--~~~~~~lpC~H~FH~~CI~~WL~~~~--sCPvCR~~ 289 (358)
.+..|.+|...|.. +....-..|+|.+|..|-. |+.... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 46899999998753 2333344599999999973 443333 28888654
No 189
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=26.27 E-value=36 Score=25.58 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=24.4
Q ss_pred CeeeeeccCcceeecCCCCCCccCCCCCCCceEEEc
Q 018299 30 PLYWCYQCHRAVRISSTNPSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 30 ~~YwCh~C~r~V~i~~~~~~ei~CP~C~~gFvEEi~ 65 (358)
..-+|..|+..-.+.-- .-..+||.|++-=...+.
T Consensus 36 v~I~CnDC~~~s~v~~h-~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 36 VDILCNDCNGRSTVQFH-ILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEEESSSCCEEEEECC-TTCCCCTTTSCCCEEESC
T ss_pred eEEECCCCCCCccCCce-eecccCcCCCCcCeEecC
Confidence 35799999996654432 112499999998777664
No 190
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.57 E-value=45 Score=23.14 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=30.3
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
...|..|...+...+.++. .=+..||..| ..|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCC--------CcccCCCCCCCCC
Confidence 5689999998876554432 3567789877 4688998887543
No 191
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=24.51 E-value=28 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=14.1
Q ss_pred CCCCCCeeeeeccCcce
Q 018299 25 ANRNYPLYWCYQCHRAV 41 (358)
Q Consensus 25 ~~~t~~~YwCh~C~r~V 41 (358)
.|.+-...||-.|++..
T Consensus 5 ~~~~~~yl~CE~C~~~~ 21 (39)
T 2l9z_A 5 NMATLFTIWCTLCDRAY 21 (39)
T ss_dssp CSCCSCSEEEGGGTEEE
T ss_pred cchhhhhhHHHHHhhhc
Confidence 47788999999999853
No 192
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.47 E-value=21 Score=26.78 Aligned_cols=47 Identities=23% Similarity=0.478 Sum_probs=29.8
Q ss_pred CCCCCCCcCCCCCCeeeeeccCcceeecCCC-------CCCccCCCCCCCceEE
Q 018299 17 NGDGNGNGANRNYPLYWCYQCHRAVRISSTN-------PSEIACPRCSGHFVSE 63 (358)
Q Consensus 17 ~~~~~~~~~~~t~~~YwCh~C~r~V~i~~~~-------~~ei~CP~C~~gFvEE 63 (358)
+++.+|.........|-|..|.+........ ...+.|+.|+..|...
T Consensus 2 ss~ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~ 55 (107)
T 1wjp_A 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSP 55 (107)
T ss_dssp CCCCCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSH
T ss_pred CCccccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCH
Confidence 3444555555566789999999866432110 0136899999988643
No 193
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.43 E-value=29 Score=27.61 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=17.0
Q ss_pred ccccccccccccCCccEEeccCCeeChhhHHHHH
Q 018299 244 TTCPVCKEEFKVGGEARELACKHIYHSECIVPWL 277 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL 277 (358)
..|.+|...+..++.. .+.=+..||..|....+
T Consensus 37 F~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHh
Confidence 4566666665433322 22235566666665554
No 194
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.20 E-value=48 Score=22.87 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=28.8
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|+.|...+. ++ .+..-+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 458999998887 33 3445678899877 679999988853
No 195
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.17 E-value=41 Score=23.56 Aligned_cols=39 Identities=26% Similarity=0.556 Sum_probs=27.5
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|..|...+. ++. +..-+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRV--IKAMNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCC-SCC--EEETTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEec-ceE--EEECcccccccC--------CEeCCCCCcCCC
Confidence 457999988876 332 333577888877 568889888754
No 196
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.49 E-value=13 Score=26.69 Aligned_cols=41 Identities=32% Similarity=0.712 Sum_probs=25.1
Q ss_pred CccccccccccccCCccEEe-c--cC-CeeChhhHHHHHhc----CCCCCccce
Q 018299 243 DTTCPVCKEEFKVGGEAREL-A--CK-HIYHSECIVPWLRL----HNSCPVCRH 288 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~l-p--C~-H~FH~~CI~~WL~~----~~sCPvCR~ 288 (358)
...| ||..... + ..+.- . |. ..||..|+. |.. .-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4567 9988632 3 22222 3 54 899999998 332 224999965
No 197
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.35 E-value=43 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=23.9
Q ss_pred Ceeeeec--cCcceeecCCCCCCccCC-----CCCCCce
Q 018299 30 PLYWCYQ--CHRAVRISSTNPSEIACP-----RCSGHFV 61 (358)
Q Consensus 30 ~~YwCh~--C~r~V~i~~~~~~ei~CP-----~C~~gFv 61 (358)
..-||-. |...|.... +...+.|| .|+-.|-
T Consensus 24 ~~~~CP~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC 61 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFC 61 (80)
T ss_dssp SSCCCCSSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEE
T ss_pred CcEECCCCCCCcccEECC-CCCcCCCCCCCCCCCCCeec
Confidence 3779999 999887654 33468999 8988774
No 198
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.80 E-value=24 Score=21.49 Aligned_cols=27 Identities=15% Similarity=0.470 Sum_probs=19.3
Q ss_pred ccccccccccccCCccEEeccCCeeChhh
Q 018299 244 TTCPVCKEEFKVGGEARELACKHIYHSEC 272 (358)
Q Consensus 244 ~~C~ICle~~~~~~~~~~lpC~H~FH~~C 272 (358)
..|+.|-..+...+.+. .=+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 57999988877554333 3578899888
No 199
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.59 E-value=59 Score=24.13 Aligned_cols=41 Identities=22% Similarity=0.578 Sum_probs=31.2
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccCC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPVS 293 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 293 (358)
...|..|...+...+. +..-+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCC--------CeeCCCCCCCCCC
Confidence 5689999998875543 345778999887 5688998888653
No 200
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.24 E-value=49 Score=20.72 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=21.0
Q ss_pred CCCCCCeeeeeccCcceeecCC---------CCCCccCCCCCC
Q 018299 25 ANRNYPLYWCYQCHRAVRISST---------NPSEIACPRCSG 58 (358)
Q Consensus 25 ~~~t~~~YwCh~C~r~V~i~~~---------~~~ei~CP~C~~ 58 (358)
.......|-|-.|.+...-... ..--..|+.|+.
T Consensus 6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 3455678999999876532111 112368999973
No 201
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.92 E-value=68 Score=22.06 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=18.4
Q ss_pred CeeeeeccCcceeecCC--------------CCCCccCCCCCCC
Q 018299 30 PLYWCYQCHRAVRISST--------------NPSEIACPRCSGH 59 (358)
Q Consensus 30 ~~YwCh~C~r~V~i~~~--------------~~~ei~CP~C~~g 59 (358)
..|-|-.|.-....+.. .+.+.+||.|+-+
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 46778888764432211 1345699999863
No 202
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.58 E-value=34 Score=23.20 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCeeeeeccCcceeecCC------CCCCccCCCCCCCceEEEc
Q 018299 29 YPLYWCYQCHRAVRISST------NPSEIACPRCSGHFVSEIE 65 (358)
Q Consensus 29 ~~~YwCh~C~r~V~i~~~------~~~ei~CP~C~~gFvEEi~ 65 (358)
...|=|..|.+...-... ..--..|++|+..|...-.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDES 54 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTT
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcc
Confidence 467999999985432110 1123799999999976543
No 203
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.50 E-value=35 Score=18.09 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.6
Q ss_pred ccCCCCCCCce
Q 018299 51 IACPRCSGHFV 61 (358)
Q Consensus 51 i~CP~C~~gFv 61 (358)
..|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 57889988875
No 204
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.23 E-value=56 Score=22.02 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=20.1
Q ss_pred CCeeeeeccCcceeecC-------CCCCCccCCCCCCC
Q 018299 29 YPLYWCYQCHRAVRISS-------TNPSEIACPRCSGH 59 (358)
Q Consensus 29 ~~~YwCh~C~r~V~i~~-------~~~~ei~CP~C~~g 59 (358)
+..|=|-.|.-....+. ..+.+.+||.|+.+
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 45688888886554221 12446799999864
No 205
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=21.21 E-value=28 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.840 Sum_probs=10.1
Q ss_pred CCeeeeeccCcce
Q 018299 29 YPLYWCYQCHRAV 41 (358)
Q Consensus 29 ~~~YwCh~C~r~V 41 (358)
+..|||-.|...+
T Consensus 1 mPkYyCdYCd~~l 13 (77)
T 3cw1_L 1 MPKFYCDYCDTYL 13 (77)
T ss_pred CCCcccccCCcee
Confidence 3579999999765
No 206
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.99 E-value=65 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=11.8
Q ss_pred CCccccccccccccCC
Q 018299 242 NDTTCPVCKEEFKVGG 257 (358)
Q Consensus 242 ~~~~C~ICle~~~~~~ 257 (358)
+-..|++|...++..+
T Consensus 9 ~iL~CP~c~~~L~~~~ 24 (56)
T 2kpi_A 9 EILACPACHAPLEERD 24 (56)
T ss_dssp TSCCCSSSCSCEEEET
T ss_pred hheeCCCCCCcceecC
Confidence 4579999999876443
No 207
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.60 E-value=54 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.571 Sum_probs=26.7
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceecc
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVP 291 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 291 (358)
...|..|...+.. +. +..-+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GG--ITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TC--EEETTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ce--EEECccccccCc--------CEECCCCCCCC
Confidence 4578899888762 32 233577888876 56888988875
No 208
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.25 E-value=33 Score=20.81 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=8.6
Q ss_pred CCCCccceeccC
Q 018299 281 NSCPVCRHEVPV 292 (358)
Q Consensus 281 ~sCPvCR~~l~~ 292 (358)
.+||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358888887754
No 209
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.03 E-value=59 Score=23.44 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=27.9
Q ss_pred CccccccccccccCCccEEeccCCeeChhhHHHHHhcCCCCCccceeccC
Q 018299 243 DTTCPVCKEEFKVGGEARELACKHIYHSECIVPWLRLHNSCPVCRHEVPV 292 (358)
Q Consensus 243 ~~~C~ICle~~~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 292 (358)
...|+.|...+. ++. +..-+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEV--VSALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCC--EEETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CCcCccccCEec-cce--EEECCceeCccC--------CccccCCCCCCC
Confidence 358999998877 332 234578899877 668899888753
Done!