BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018300
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/279 (64%), Positives = 218/279 (78%), Gaps = 9/279 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 34 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 93
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E +DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP
Sbjct: 94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 153
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SA
Sbjct: 154 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 213
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R
Sbjct: 214 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 273
Query: 322 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQVG 351
G+IF++K DP G E+ E IN AVFP LQ G
Sbjct: 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGG 312
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/278 (66%), Positives = 217/278 (78%), Gaps = 9/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 16 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 75
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 76 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 135
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 136 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 195
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ +Y R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 196 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 255
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF++K DP G E LES IN+AVFPGLQ G
Sbjct: 256 MIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGG 293
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 357 bits (916), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/278 (66%), Positives = 216/278 (77%), Gaps = 9/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF+++ DP G E LES IN+AVFPGLQ G
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 357 bits (916), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/278 (66%), Positives = 216/278 (77%), Gaps = 9/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 12 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 72 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 132 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 191
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 192 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 251
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF+++ DP G E LES IN+AVFPGLQ G
Sbjct: 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 289
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 356 bits (913), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/278 (66%), Positives = 216/278 (77%), Gaps = 9/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS+G PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF+++ DP G E LES IN+AVFPGLQ G
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 354 bits (908), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 184/278 (66%), Positives = 215/278 (77%), Gaps = 9/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGG 84
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF+++ DP G E LES IN+AVFPGLQ G
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 341 bits (875), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 179/278 (64%), Positives = 209/278 (75%), Gaps = 9/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GS L NKYSEG PG+RYYGG
Sbjct: 20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELE LCQKRAL A++LD WGVNVQP SGSPANF VYTA+++PH RI GLDLP
Sbjct: 80 TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGF T K+++S TSI+FES PY++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 140 GGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCY 199
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA L D AHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 200 SRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 259
Query: 323 MIFFKK-----DPVLG----VELESAINNAVFPGLQVG 351
IF++K DP G ELES IN+AVFPGLQ G
Sbjct: 260 XIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGG 297
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A A+AY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY++G PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTH++LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 185/275 (67%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNK++EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 184/275 (66%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTH +LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 184/275 (66%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RY GG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 184/275 (66%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+R YGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
MI ++ + I+ A+FPG+Q G + +V
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/284 (49%), Positives = 180/284 (63%), Gaps = 14/284 (4%)
Query: 74 DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
+ + F SL E D V I KE ERQ +ELIASEN SRAV++A GS LTNKY+EG
Sbjct: 4 NANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEG 63
Query: 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193
PGKRYYGG E+ DE+E L +R FN NVQP SG+ AN V A+ KP D
Sbjct: 64 YPGKRYYGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGD 119
Query: 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253
++G+ L GGHL+HG K +SG +F ++ Y + T L+DYD +E A +P
Sbjct: 120 TVLGMSLDAGGHLTHG---AKPALSGK--WFNALQYGVSRDTMLIDYDQVEALAQQHKPS 174
Query: 254 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 313
LIIAG SAYPR D+ R R IAD+VGA LM+DMAHI+G++AA A+P ++ VVT+TTH
Sbjct: 175 LIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTH 234
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
K+LRGPRGG + + E+ IN+AVFPGLQ G + +V
Sbjct: 235 KTLRGPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVI 273
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/271 (48%), Positives = 179/271 (66%), Gaps = 15/271 (5%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
D + E I +E +RQ ++ELIASENF S AVMEA GS LTNKY+EG PG+RYYGG E++
Sbjct: 11 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFV 70
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D E++ RA A F + VNVQP SG AN VY L+ D ++G++L HGGHL
Sbjct: 71 DVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
+HG P V+ + ++ + Y +D+ T ++YD + K A+ +PKLI+AGASAY R
Sbjct: 127 THG--AP---VNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTI 181
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
D+ + ++IAD V A LM+DMAHI+GLVAA + +P +Y D VTTTTHK+LRGPRGGMI
Sbjct: 182 DFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILC 241
Query: 327 KKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
K+ E + I+ +FPG+Q G + +V
Sbjct: 242 KE------EYKKDIDKTIFPGIQGGPLEHVI 266
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 181/275 (65%), Gaps = 15/275 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E DP++ E++ KE RQ +LE+IASENF RAV++A GS LTNKY+EGLPG+RYYGG
Sbjct: 26 LAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGG 85
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E++D +E L + RA A F + NVQP SG+ AN V A++ P +R++GLDL +
Sbjct: 86 CEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLAN 141
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG R++ + +E+ Y +D +T L+D D + TA+ FRPK+IIAG SAY
Sbjct: 142 GGHLTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY 196
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ R IAD VGA L++DMAH +GLVAA + P + DVV+TT H +L G R G
Sbjct: 197 PRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSG 256
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
+I K+ + AIN+AVFPG Q G + +V
Sbjct: 257 LIVGKQ------QYAKAINSAVFPGQQGGPLMHVI 285
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 250 bits (639), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 180/271 (66%), Gaps = 14/271 (5%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
D + E+I E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYGG E I
Sbjct: 8 DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVI 67
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D +E+L +RA A F W NVQP SGS AN VY A+++P D +MG+DL GGHL
Sbjct: 68 DRVESLAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHL 123
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
+HG RV+ + ++ + Y + T L+D + + + A+ RPK+I+AGASAYPR +
Sbjct: 124 THG-----SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFW 178
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
D+ R+IAD VGA L++DMAH +GLVAA + +P Y VVT+TTHK+LRGPRGG+I
Sbjct: 179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI-L 237
Query: 327 KKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
DP LG I+ +FPG+Q G + +V
Sbjct: 238 SNDPELG----KRIDKLIFPGIQGGPLEHVI 264
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 177/275 (64%), Gaps = 15/275 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL D E+ ++ KE ERQ + LE IASENFT V E GS LTNKY+EG PGKRYYG
Sbjct: 5 SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E++DE+ETL +R FN K+ NVQP SGS AN VY A++ P D+I+G DL
Sbjct: 65 GCEFVDEIETLAIERCKKLFNC---KFA-NVQPNSGSQANQGVYAALINPGDKILGXDLS 120
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG +VS + +ES Y + E G +DY+ + + A +PKLI+ GASA
Sbjct: 121 HGGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASA 174
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R D+ + R+IAD +GA L D+AHI+GLV A PF Y VV++TTHK+LRGPRG
Sbjct: 175 YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYV 356
G+I + EL IN+A+FPG+Q G + +V
Sbjct: 235 GIIXTNDE-----ELAKKINSAIFPGIQGGPLXHV 264
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 185/276 (67%), Gaps = 13/276 (4%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRYYG
Sbjct: 7 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYG 66
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L
Sbjct: 67 GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
G+I K EL +N+AVFPG Q G + +V
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVI 269
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 186/278 (66%), Gaps = 13/278 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY
Sbjct: 5 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 64
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
+GG EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 65 FGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
Query: 200 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259
L HGGHL+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G
Sbjct: 121 LAHGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGF 174
Query: 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319
SAY D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GP
Sbjct: 175 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP 234
Query: 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
RGG+I K EL +N+AVFPG Q G + +V
Sbjct: 235 RGGLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVI 269
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 186/278 (66%), Gaps = 13/278 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNK++EG PGKRY
Sbjct: 5 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRY 64
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
YGG EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 65 YGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
Query: 200 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259
L HGGHL+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G
Sbjct: 121 LAHGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGF 174
Query: 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319
SAY D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GP
Sbjct: 175 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP 234
Query: 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
RGG+I K EL +N+AVFPG Q G + +V
Sbjct: 235 RGGLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVI 269
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 217 bits (552), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 132/276 (47%), Positives = 176/276 (63%), Gaps = 13/276 (4%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
++ + D E+ + +EK RQ + +ELIASEN+TS V +A GS LTNKY+EG PGKRYYG
Sbjct: 10 NIADYDAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYG 69
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G +L
Sbjct: 70 GCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLA 125
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG +P V+ + + +PY +DES G +DYD K A +PK II G SA
Sbjct: 126 QGGHLTHG--SP---VNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSA 179
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y D+ + R+IAD++GA L +D AH++GL+AA V +P + VVTTTTHK+L GPRG
Sbjct: 180 YSGVVDWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG 239
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357
G+I K EL +N+AVFP Q G + +V
Sbjct: 240 GLILAKGGD---EELYKKLNSAVFPSAQGGPLXHVI 272
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 305 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 337
D+V T+T K + GPRGG++ KK+ V + +E
Sbjct: 199 ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIE 231
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 239
AN ++ +L D I+ L H + + +R + + + RL E+
Sbjct: 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDXQELEARLKEAREAGA 176
Query: 240 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299
+L T +F +IA + + +AD AL+ +D +H G V +
Sbjct: 177 RHVLIATDGVFSXDGVIA---------NLKGVCDLADKYDALVXVDDSHAVGFVGENGRG 227
Query: 300 DPFKYCDV------VTTTTHKSLRGPRGGMIFFKKDPV 331
+YCDV +T T K+L G GG +K+ V
Sbjct: 228 -SHEYCDVXGRVDIITGTLGKALGGASGGYTAARKEVV 264
>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like Domain
Of Hypothetical Protein (Arabidopsis Thaliana)
Length = 107
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 123 GSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182
G+ L + +GL G + + +L+TL Q + + N+ L+ SP++F
Sbjct: 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLL-LAKSPSDF 65
Query: 183 EVYTAILKPHDRIMGLDLPHG 203
+T + P+ RI L+L HG
Sbjct: 66 LAFTDMADPNLRISSLNLAHG 86
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 305 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 337
D+V T+T + GPRGG++ KK+ V + +E
Sbjct: 199 ADLVVTSTDXLMEGPRGGLLAGKKELVDKIYIE 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,849,093
Number of Sequences: 62578
Number of extensions: 445870
Number of successful extensions: 1022
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 43
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)