BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018302
         (358 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HXM|A Chain A, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
 pdb|1HXM|C Chain C, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
 pdb|1HXM|E Chain E, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
 pdb|1HXM|G Chain G, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
          Length = 229

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query: 62  TPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQ 121
           T   +F   T    + R    ++ + FV KNGT + C V + Y   +   L+S  +    
Sbjct: 104 TDKLIFGKGTRVTVEPRSQPHTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKKITEF 163

Query: 122 DQVLVIA 128
           D  +VI+
Sbjct: 164 DPAIVIS 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,985,960
Number of Sequences: 62578
Number of extensions: 465603
Number of successful extensions: 895
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 1
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)