Query 018302
Match_columns 358
No_of_seqs 161 out of 429
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03407 Nucleotid_trans: Nucl 100.0 1.3E-40 2.8E-45 304.0 18.9 203 121-338 3-212 (212)
2 cd02537 GT8_Glycogenin Glycoge 98.5 4.4E-06 9.6E-11 77.9 16.5 195 100-327 8-207 (240)
3 PLN00176 galactinol synthase 98.3 4.2E-05 9E-10 74.7 17.9 189 92-297 21-232 (333)
4 cd00505 Glyco_transf_8 Members 98.3 9.3E-05 2E-09 69.1 18.1 223 95-327 3-239 (246)
5 cd04194 GT8_A4GalT_like A4GalT 98.0 5.9E-05 1.3E-09 70.3 12.1 191 96-298 3-206 (248)
6 cd06914 GT8_GNT1 GNT1 is a fun 97.4 0.0059 1.3E-07 58.3 15.4 170 100-300 8-189 (278)
7 PF01501 Glyco_transf_8: Glyco 97.4 0.001 2.2E-08 61.0 9.2 220 96-327 2-241 (250)
8 PF05637 Glyco_transf_34: gala 97.2 0.00031 6.7E-09 65.7 3.9 159 167-329 58-233 (239)
9 cd06431 GT8_LARGE_C LARGE cata 97.1 0.021 4.5E-07 54.7 15.1 222 95-327 4-246 (280)
10 cd06430 GT8_like_2 GT8_like_2 97.1 0.042 9E-07 53.1 16.9 155 176-340 90-267 (304)
11 COG1442 RfaJ Lipopolysaccharid 96.7 0.011 2.3E-07 57.8 9.5 186 96-287 5-203 (325)
12 PRK15171 lipopolysaccharide 1, 96.2 0.063 1.4E-06 52.7 11.8 221 93-326 25-264 (334)
13 cd06432 GT8_HUGT1_C_like The C 96.1 0.16 3.5E-06 47.7 13.7 140 175-328 87-240 (248)
14 PLN03181 glycosyltransferase; 96.0 0.14 3.1E-06 51.1 13.0 107 168-286 181-308 (453)
15 PLN03182 xyloglucan 6-xylosylt 95.8 0.057 1.2E-06 53.8 9.4 121 168-300 180-323 (429)
16 PF03314 DUF273: Protein of un 92.4 0.72 1.6E-05 42.1 8.2 99 166-285 25-127 (222)
17 PLN02829 Probable galacturonos 88.7 2.7 5.8E-05 44.3 9.5 146 169-327 444-604 (639)
18 cd06429 GT8_like_1 GT8_like_1 82.8 2.7 5.8E-05 39.7 5.7 130 167-327 99-235 (257)
19 PLN02910 polygalacturonate 4-a 78.8 7.9 0.00017 40.9 7.8 157 159-327 451-622 (657)
20 cd02515 Glyco_transf_6 Glycosy 78.6 16 0.00035 34.7 9.3 104 84-199 23-140 (271)
21 PLN02659 Probable galacturonos 77.9 10 0.00022 39.4 8.3 137 176-327 337-498 (534)
22 PLN02870 Probable galacturonos 76.9 13 0.00028 38.6 8.7 138 177-327 337-497 (533)
23 PLN02742 Probable galacturonos 76.8 64 0.0014 33.8 13.6 148 168-327 339-500 (534)
24 PF11051 Mannosyl_trans3: Mann 74.2 14 0.0003 35.1 7.7 98 96-204 4-112 (271)
25 PLN02867 Probable galacturonos 70.9 36 0.00078 35.6 10.2 142 177-327 339-500 (535)
26 KOG4748 Subunit of Golgi manno 70.6 19 0.00041 35.7 7.8 153 167-330 157-335 (364)
27 PF03414 Glyco_transf_6: Glyco 67.4 32 0.0007 33.8 8.6 105 84-200 88-205 (337)
28 PLN02718 Probable galacturonos 65.8 21 0.00045 37.8 7.4 145 168-327 404-568 (603)
29 PLN02523 galacturonosyltransfe 65.4 27 0.00058 36.6 8.0 139 176-327 370-524 (559)
30 PLN02769 Probable galacturonos 59.3 59 0.0013 34.7 9.3 36 169-205 439-474 (629)
31 cd08579 GDPD_memb_like Glycero 57.5 99 0.0022 27.8 9.7 69 77-145 80-151 (220)
32 cd08575 GDPD_GDE4_like Glycero 54.4 1.9E+02 0.0041 27.1 11.8 66 77-143 95-160 (264)
33 cd08580 GDPD_Rv2277c_like Glyc 51.7 2.1E+02 0.0046 26.9 13.0 64 78-142 93-156 (263)
34 PRK00753 psbL photosystem II r 51.5 15 0.00032 24.1 2.2 23 37-59 13-35 (39)
35 PF13704 Glyco_tranf_2_4: Glyc 51.5 1.1E+02 0.0023 23.4 9.1 82 105-199 4-88 (97)
36 PF02419 PsbL: PsbL protein; 47.7 10 0.00022 24.7 1.0 22 37-58 11-32 (37)
37 cd08573 GDPD_GDE1 Glycerophosp 47.1 96 0.0021 29.0 8.0 68 77-145 86-155 (258)
38 cd08565 GDPD_pAtGDE_like Glyce 45.4 1.3E+02 0.0028 27.7 8.5 68 77-145 79-151 (235)
39 CHL00038 psbL photosystem II p 40.8 42 0.0009 22.0 3.0 23 36-58 11-33 (38)
40 PF00535 Glycos_transf_2: Glyc 40.6 1.2E+02 0.0026 24.4 7.0 88 94-200 1-96 (169)
41 cd08563 GDPD_TtGDE_like Glycer 40.1 1.3E+02 0.0028 27.3 7.6 69 77-145 86-157 (230)
42 COG1438 ArgR Arginine represso 39.7 78 0.0017 27.5 5.6 60 80-139 79-144 (150)
43 cd08556 GDPD Glycerophosphodie 39.7 1.6E+02 0.0034 25.3 7.8 68 79-146 48-116 (189)
44 PRK14762 membrane protein; Pro 36.0 52 0.0011 19.7 2.6 12 45-56 12-23 (27)
45 cd08612 GDPD_GDE4 Glycerophosp 35.8 3.9E+02 0.0086 25.4 12.2 68 76-145 119-186 (300)
46 cd08582 GDPD_like_2 Glyceropho 34.3 1.6E+02 0.0036 26.6 7.3 70 77-146 84-156 (233)
47 COG1216 Predicted glycosyltran 33.2 2.4E+02 0.0052 26.7 8.5 92 95-201 5-103 (305)
48 cd08566 GDPD_AtGDE_like Glycer 31.8 2.5E+02 0.0055 25.8 8.2 66 76-145 84-149 (240)
49 PF02484 Rhabdo_NV: Rhabdoviru 31.0 60 0.0013 25.7 3.1 29 170-198 12-40 (111)
50 PF04765 DUF616: Protein of un 30.6 75 0.0016 30.9 4.5 114 173-292 142-288 (305)
51 PF02863 Arg_repressor_C: Argi 30.3 95 0.0021 23.0 4.1 57 83-139 3-65 (70)
52 cd08564 GDPD_GsGDE_like Glycer 29.2 2.5E+02 0.0053 26.2 7.7 67 76-143 104-171 (265)
53 PF11857 DUF3377: Domain of un 28.7 56 0.0012 24.9 2.5 24 43-66 38-63 (74)
54 PF09879 DUF2106: Predicted me 26.9 86 0.0019 27.0 3.6 31 38-69 16-46 (153)
55 cd08568 GDPD_TmGDE_like Glycer 26.5 3.3E+02 0.0071 24.6 7.8 65 77-144 77-141 (226)
56 cd08601 GDPD_SaGlpQ_like Glyce 26.2 2.9E+02 0.0063 25.4 7.6 70 75-144 94-170 (256)
57 cd08567 GDPD_SpGDE_like Glycer 25.0 3.4E+02 0.0074 24.8 7.8 69 77-145 107-187 (263)
58 cd04195 GT2_AmsE_like GT2_AmsE 24.8 4.3E+02 0.0094 22.4 8.2 27 94-120 1-27 (201)
59 cd08562 GDPD_EcUgpQ_like Glyce 24.0 3.4E+02 0.0073 24.3 7.4 69 77-145 84-156 (229)
60 cd08574 GDPD_GDE_2_3_6 Glycero 23.9 5.8E+02 0.013 23.5 11.0 70 76-146 110-185 (252)
61 COG4750 LicC CTP:phosphocholin 22.5 2.6E+02 0.0057 25.6 6.0 79 106-200 32-110 (231)
62 TIGR00730 conserved hypothetic 22.3 2.8E+02 0.0061 24.5 6.3 58 79-137 107-175 (178)
63 cd08561 GDPD_cytoplasmic_ScUgp 21.7 4E+02 0.0086 24.4 7.5 67 77-145 92-158 (249)
64 cd04186 GT_2_like_c Subfamily 21.3 4.4E+02 0.0095 21.2 8.8 91 96-203 2-95 (166)
65 COG4037 Predicted membrane pro 21.1 88 0.0019 26.5 2.6 29 39-68 21-49 (163)
66 TIGR03472 HpnI hopanoid biosyn 21.0 6.6E+02 0.014 24.5 9.4 92 94-201 44-145 (373)
67 KOG4753 Predicted membrane pro 20.8 1.3E+02 0.0028 25.1 3.4 30 31-60 45-74 (124)
68 cd05530 POLBc_B1 DNA polymeras 20.8 1.3E+02 0.0027 30.1 4.1 29 171-199 151-180 (372)
69 cd06386 PBP1_NPR_C_like Ligand 20.5 2.4E+02 0.0051 27.7 6.1 8 123-130 196-203 (387)
70 PF02038 ATP1G1_PLM_MAT8: ATP1 20.5 1.2E+02 0.0025 21.4 2.7 19 40-58 15-33 (50)
71 cd08572 GDPD_GDE5_like Glycero 20.5 3.7E+02 0.0079 25.6 7.2 69 77-145 121-203 (293)
72 cd08555 PI-PLCc_GDPD_SF Cataly 20.4 5.6E+02 0.012 22.1 9.3 53 76-128 56-120 (179)
73 PRK11204 N-glycosyltransferase 20.4 6.7E+02 0.014 24.7 9.4 89 94-203 57-155 (420)
No 1
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=100.00 E-value=1.3e-40 Score=303.97 Aligned_cols=203 Identities=34% Similarity=0.579 Sum_probs=172.6
Q ss_pred cccEEEEEecHHHHHHHhccCCCcEEecCC-CCCcccccccCchhHHHHHhhHHHHHHHHHHcCCcEEEeecceeeecCC
Q 018302 121 QDQVLVIAEDYATLYKVNGRWPGHAVLVPP-APDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDP 199 (358)
Q Consensus 121 ~~~vlVvAlD~~a~~~~~~~~pg~~v~~~~-~~~~~~~~~~gs~~f~~~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdP 199 (358)
.+|++|+|+|+++++.|++.++.|..+... .........+|+..|.+++|.|+.+++++|++||+|+++|+||||+|||
T Consensus 3 ~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp 82 (212)
T PF03407_consen 3 IDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDP 82 (212)
T ss_pred cccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCc
Confidence 589999999999999999888887765543 2334467789999999999999999999999999999999999999999
Q ss_pred cccc-cCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHH
Q 018302 200 FPYL-QGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPA 278 (358)
Q Consensus 200 l~~~-~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~a 278 (358)
++++ ..++|+.+++|.....+.. ..+..+|+||||+|+|+++++|+++|.+.+.+. ++.+||.+
T Consensus 83 ~~~~~~~~~Di~~~~d~~~~~~~~----------~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~-----~~~~DQ~~ 147 (212)
T PF03407_consen 83 LPYFENPDADILFSSDGWDGTNSD----------RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAES-----PGCWDQQA 147 (212)
T ss_pred HHhhccCCCceEEecCCCcccchh----------hcCCccccceEEEecCHHHHHHHHHHHHHHHhC-----CCcchHHH
Confidence 9999 7789999999876422111 113457999999999999999999999999874 46679999
Q ss_pred HHHHHhhcC---CccEEEeccCCCcCCCceeeec-chhhhhc-CCceEEEEeCCcCChHHHHHHH
Q 018302 279 FNWALNKTA---GQVDLYLLPQSAFPTGGLYFKN-QTWVEET-KGKHVIIHNNYITGFEKKIKRF 338 (358)
Q Consensus 279 fN~ll~~~~---~~l~v~~Lp~~~FpsG~~yf~~-~~~~~~~-~~~p~~VH~n~~~g~~~K~~rl 338 (358)
||.++.+.. +++++++||...||||+.||.+ +.|.... +.+||+||+||+.|.++|++||
T Consensus 148 ~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~ 212 (212)
T PF03407_consen 148 FNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF 212 (212)
T ss_pred HHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence 999999975 7999999999999999999988 2232111 4689999999999999999886
No 2
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=98.53 E-value=4.4e-06 Score=77.95 Aligned_cols=195 Identities=15% Similarity=0.103 Sum_probs=111.2
Q ss_pred eCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHhccCCCcEEecCCCCCcccccccCchhHHHHHhhHHHHH
Q 018302 100 VSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHL 176 (358)
Q Consensus 100 ~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~~~~pg~~v~~~~~~~~~~~~~~gs~~f~~~~~~K~~~l 176 (358)
+|..|+.-+..-+.|+++.+-..+++|+..+ ++..+.+++. +..+..-+..+...........+...++.|..+.
T Consensus 8 ~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~ 85 (240)
T cd02537 8 TNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEV--GWIVREVEPIDPPDSANLLKRPRFKDTYTKLRLW 85 (240)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEecCccCCcchhhhccchHHHHHhHHHHhc
Confidence 6678999999999999988543455555433 4555566654 3333221112111111111234556677786665
Q ss_pred HHHHHcCC-cEEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecChhHHHHH
Q 018302 177 LHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVM 255 (358)
Q Consensus 177 ~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T~~t~~~~ 255 (358)
. + ..| .|++.|+|++.++|+-+.|.....+....|. . .....|+|+|.++++. ...
T Consensus 86 ~-l--~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~---------------~--~~~~fNsGv~l~~~~~---~~~ 142 (240)
T cd02537 86 N-L--TEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDC---------------G--WPDLFNSGVFVLKPSE---ETF 142 (240)
T ss_pred c-c--cccceEEEEeCCeeEccCHHHHhCCCCceeeeccc---------------C--ccccccceEEEEcCCH---HHH
Confidence 4 2 256 4999999999999987777641112111111 0 0247899999999965 444
Q ss_pred HHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCC-cCCCceeeecchhhhhcCCceEEEEeCC
Q 018302 256 KKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSA-FPTGGLYFKNQTWVEETKGKHVIIHNNY 327 (358)
Q Consensus 256 ~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~-FpsG~~yf~~~~~~~~~~~~p~~VH~n~ 327 (358)
+...+.+.+.. .....||.++|.++++.. .+..||... +..+..+... .+ .....+|.++|-+.
T Consensus 143 ~~~~~~~~~~~---~~~~~DQdiLN~~~~~~~---~~~~l~~~yN~~~~~~~~~~-~~-~~~~~~~~iiHf~g 207 (240)
T cd02537 143 NDLLDALQDTP---SFDGGDQGLLNSYFSDRG---IWKRLPFTYNALKPLRYLHP-EA-LWFGDEIKVVHFIG 207 (240)
T ss_pred HHHHHHHhccC---CCCCCCHHHHHHHHcCCC---CEeECCcceeeehhhhccCc-hh-hcccCCcEEEEEeC
Confidence 55555555431 135689999999996542 566677542 1111111111 10 12345799999663
No 3
>PLN00176 galactinol synthase
Probab=98.32 E-value=4.2e-05 Score=74.66 Aligned_cols=189 Identities=14% Similarity=0.144 Sum_probs=106.6
Q ss_pred CCeEEEEE--eCcchHHHHHHHHHHhhhcCCcccEEEEEecH---HHHHHHhccCCCcEEecCCCC-CcccccccCchhH
Q 018302 92 NGTIIVCA--VSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNGRWPGHAVLVPPAP-DSQTAHKFGSQGF 165 (358)
Q Consensus 92 ~~tVIvt~--~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~---~a~~~~~~~~pg~~v~~~~~~-~~~~~~~~gs~~f 165 (358)
.+...||+ +|..|..=+.....|+++.|-...++|+..++ +..+.|++. ||.+..-+.. .......+.. .+
T Consensus 21 ~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~--g~~V~~V~~i~~~~~~~~~~~-~~ 97 (333)
T PLN00176 21 AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQ--GCIVREIEPVYPPENQTQFAM-AY 97 (333)
T ss_pred CceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEecccCCccccccccc-ch
Confidence 46677773 57889999999999999998655655555553 445566554 6666532111 1111112322 23
Q ss_pred HHHHhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCCCc-eeeecCCcccCCCCCC--------------CCCC-
Q 018302 166 FNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHD-VYFTDDMAAVKPLDHS--------------HDLP- 228 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~D-v~~s~D~~~~~~~~~~--------------~~~p- 228 (358)
..+.+.|.++-. +. .| .|++.|+|++-++|.-+.|....+ +....|+.....+.+. ...|
T Consensus 98 ~~i~~tKl~iw~-l~--~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~ 174 (333)
T PLN00176 98 YVINYSKLRIWE-FV--EYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPA 174 (333)
T ss_pred hhhhhhhhhhcc-cc--ccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchh
Confidence 345556766433 33 36 499999999999987666654222 2222333210000000 0011
Q ss_pred CCCCCCCcccceeEEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccC
Q 018302 229 PPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQ 297 (358)
Q Consensus 229 ~~g~~~~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~ 297 (358)
..|.....++|+|+|.+.|+..+. +...+.+...+ .....||.++|.++.+ ++..||.
T Consensus 175 ~~g~~~~~yFNSGVlvinps~~~~---~~ll~~l~~~~---~~~f~DQD~LN~~F~~-----~~~~Lp~ 232 (333)
T PLN00176 175 ELGPPPPLYFNAGMFVFEPSLSTY---EDLLETLKITP---PTPFAEQDFLNMFFRD-----IYKPIPP 232 (333)
T ss_pred hccCCCCCeEEeEEEEEEcCHHHH---HHHHHHHHhcC---CCCCCCHHHHHHHHcC-----cEEECCc
Confidence 011111348999999999986653 33444443321 1245799999999974 3445664
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=98.25 E-value=9.3e-05 Score=69.09 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=115.3
Q ss_pred EEEEEeCcchHHHHHHHHHHhhhcCC-cccEEEEEec--HHHHHHHhccC--CCcEE-ecCCCCCcccccccCchhHHHH
Q 018302 95 IIVCAVSQPYLPFLNNWLISISRQKH-QDQVLVIAED--YATLYKVNGRW--PGHAV-LVPPAPDSQTAHKFGSQGFFNF 168 (358)
Q Consensus 95 VIvt~~N~~~~~~~~Nwl~sl~~~g~-~~~vlVvAlD--~~a~~~~~~~~--pg~~v-~~~~~~~~~~~~~~gs~~f~~~ 168 (358)
++++.++..|+.-+.--+.|+.+..- .-++.|++.| ++..+.+.+.. .++.+ +.+...............+...
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIV 82 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccc
Confidence 45556677999988888888876532 2355666543 33444454321 23322 2211110000000001122334
Q ss_pred HhhHHHHHHHHHHcCCc-EEEeecceeeecCCcccccCC---CceeeecCCccc---CCCCCCCCCCCCCCCCCccccee
Q 018302 169 TSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGD---HDVYFTDDMAAV---KPLDHSHDLPPPGKKGRTYICSC 241 (358)
Q Consensus 169 ~~~K~~~l~~lL~~Gy~-Vl~sDvDvVWlrdPl~~~~~~---~Dv~~s~D~~~~---~~~~~~~~~p~~g~~~~~~iNsG 241 (358)
+..|.. +-+++. .++ |++.|+|++.++|.-+.+.-+ .-+.+..|.... ..+......+ ....++|+|
T Consensus 83 ~y~RL~-i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~----~~~~yfNsG 156 (246)
T cd00505 83 TLTKLH-LPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHL----AGPDYFNSG 156 (246)
T ss_pred eeHHHH-HHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCC----CCCCceeee
Confidence 444544 445677 785 999999999999887766543 222222333210 0000000011 124589999
Q ss_pred EEEEecChhH-HHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhhhhcCCce
Q 018302 242 MIYLRPTDGA-KLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKH 320 (358)
Q Consensus 242 f~~~R~T~~t-~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~~~~~~~p 320 (358)
+|.+..+.-. ..+++...+...... ......||.++|.++.+.. ..+..||...=.....++.......+...+|
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~~~--~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~ 232 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSL--SSLSGGDQDLLNTFFKQVP--FIVKSLPCIWNVRLTGCYRSLNCFKAFVKNA 232 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhc--ccCccCCcHHHHHHHhcCC--CeEEECCCeeeEEecCccccccchhhhcCCC
Confidence 9999988763 445555444333211 1246789999999996543 4677777642111111111110012345689
Q ss_pred EEEEeCC
Q 018302 321 VIIHNNY 327 (358)
Q Consensus 321 ~~VH~n~ 327 (358)
.++|-+.
T Consensus 233 ~iiHy~g 239 (246)
T cd00505 233 KVIHFNG 239 (246)
T ss_pred EEEEeCC
Confidence 9999664
No 5
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=98.04 E-value=5.9e-05 Score=70.30 Aligned_cols=191 Identities=18% Similarity=0.174 Sum_probs=105.5
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCC--cccEEEEEec--HHHHHHHhccC--CCcEE--ecCCCCCcccccccCchhHHH
Q 018302 96 IVCAVSQPYLPFLNNWLISISRQKH--QDQVLVIAED--YATLYKVNGRW--PGHAV--LVPPAPDSQTAHKFGSQGFFN 167 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl~~~g~--~~~vlVvAlD--~~a~~~~~~~~--pg~~v--~~~~~~~~~~~~~~gs~~f~~ 167 (358)
||.++|+.|+.-+..-+.|+.+..- .-++.|++.| ++..+.+++.. +++.+ ..-+....... ......|..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFF-PATTDHISY 81 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcC-CcccccccH
Confidence 6788999999999888898877532 2355666644 45555565432 13322 11100000000 002233444
Q ss_pred HHhhHHHHHHHHHHcCCc-EEEeecceeeecCCcccccCCC---ceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEE
Q 018302 168 FTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGDH---DVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMI 243 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy~-Vl~sDvDvVWlrdPl~~~~~~~---Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~ 243 (358)
.+..|..+- .++. .|+ |++.|+|++.++|+-+.+..+. -+.+..|..... ... ......+.....++|+|+|
T Consensus 82 ~~y~rl~l~-~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~-~~~-~~~~~~~~~~~~yfNsGv~ 157 (248)
T cd04194 82 ATYYRLLIP-DLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQ-EKK-RKRRLGGYDDGSYFNSGVL 157 (248)
T ss_pred HHHHHHHHH-HHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHH-HHH-HHhhcCCCcccceeeecch
Confidence 555555543 4555 675 9999999999999877665431 122333432210 000 0000001112457999999
Q ss_pred EEecCh-hHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCC
Q 018302 244 YLRPTD-GAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQS 298 (358)
Q Consensus 244 ~~R~T~-~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~ 298 (358)
.+..+. +...+.+++.+.+.... ......||.++|.++.+. +..||..
T Consensus 158 l~nl~~~r~~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~~-----~~~L~~~ 206 (248)
T cd04194 158 LINLKKWREENITEKLLELIKEYG--GRLIYPDQDILNAVLKDK-----ILYLPPR 206 (248)
T ss_pred heeHHHHHHhhhHHHHHHHHHhCC--CceeeCChHHHHHHHhCC-----eEEcCcc
Confidence 998763 23345556666555432 123578999999999654 6677753
No 6
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=97.42 E-value=0.0059 Score=58.32 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=94.0
Q ss_pred eCcchHHHHHHHHHHhhhcCCcccEEEEEecH---HHHHHHhc-----cCCCcEEecCCCCCcccccccCchhHHHHHhh
Q 018302 100 VSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNG-----RWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSR 171 (358)
Q Consensus 100 ~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~---~a~~~~~~-----~~pg~~v~~~~~~~~~~~~~~gs~~f~~~~~~ 171 (358)
+|.+|+.-+.-...|+++.|-....+|+..++ .+.....+ ..-++.+..-+...... ++..|.. ++.
T Consensus 8 Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~----~~~~~~~-~~t 82 (278)
T cd06914 8 TNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG----GDAYWAK-SLT 82 (278)
T ss_pred cChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC----CCccHHH-HHH
Confidence 58999999999999999998644444443332 11111110 11134332211111110 2233332 355
Q ss_pred HHHHHHHHHHcCC-cEEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecChh
Q 018302 172 RPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDG 250 (358)
Q Consensus 172 K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T~~ 250 (358)
|..+... ..| .|++.|+|++-++|.-..|.-..+..+ .+ | .. .-.+|+|+|.+.|+..
T Consensus 83 Kl~~~~l---~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~----Aa--p--------~~----~~~FNSGvmvi~ps~~ 141 (278)
T cd06914 83 KLRAFNQ---TEYDRIIYFDSDSIIRHPMDELFFLPNYIKF----AA--P--------RA----YWKFASHLMVIKPSKE 141 (278)
T ss_pred HHHhccc---cceeeEEEecCChhhhcChHHHhcCCcccce----ee--e--------cC----cceecceeEEEeCCHH
Confidence 6555443 347 499999999999987655543211100 00 0 00 1278999999999976
Q ss_pred HHH-HHHHHHHHHHcCccccCCCCCChHHHHHHHhhcC--CccEEEeccCCCc
Q 018302 251 AKL-VMKKWIEELQAEPWSKAKKANDQPAFNWALNKTA--GQVDLYLLPQSAF 300 (358)
Q Consensus 251 t~~-~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~--~~l~v~~Lp~~~F 300 (358)
+.. +++...+.... .....||.++|.++.+.. ....+.+||...+
T Consensus 142 ~~~~l~~~~~~~~~~-----~~~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y 189 (278)
T cd06914 142 AFKELMTEILPAYLN-----KKNEYDMDLINEEFYNSKQLFKPSVLVLPHRQY 189 (278)
T ss_pred HHHHHHHHHHHhccc-----CCCCCChHHHHHHHhCCccccCcceEEcCcccc
Confidence 533 33323322221 235689999999997652 3345777886543
No 7
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.36 E-value=0.001 Score=60.98 Aligned_cols=220 Identities=18% Similarity=0.164 Sum_probs=108.8
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCc-cc--EEEEEe--cHHHHHHHhccCCC---cEEecCCCCCc-c--cccccCchh
Q 018302 96 IVCAVSQPYLPFLNNWLISISRQKHQ-DQ--VLVIAE--DYATLYKVNGRWPG---HAVLVPPAPDS-Q--TAHKFGSQG 164 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl~~~g~~-~~--vlVvAl--D~~a~~~~~~~~pg---~~v~~~~~~~~-~--~~~~~gs~~ 164 (358)
|+..+|..|+.-+..-+.|+.+..-. .+ +.|+.- .++..+.+++.... ...+..+.... . .........
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 67789999999999999999887531 23 333432 23445555432211 11111110000 0 011122233
Q ss_pred HHHHHhhHHHHHHHHHHcCCc-EEEeecceeeecCCcccccCC---CceeeecCCcc----cCCCCCCCCCCCCCCCCCc
Q 018302 165 FFNFTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGD---HDVYFTDDMAA----VKPLDHSHDLPPPGKKGRT 236 (358)
Q Consensus 165 f~~~~~~K~~~l~~lL~~Gy~-Vl~sDvDvVWlrdPl~~~~~~---~Dv~~s~D~~~----~~~~~~~~~~p~~g~~~~~ 236 (358)
+...+..|..+.. ++ ..|+ |++.|+||+.++|.-..+.-+ .-+....|... ....... .........
T Consensus 82 ~~~~~~~rl~i~~-ll-~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~ 156 (250)
T PF01501_consen 82 FSPATFARLFIPD-LL-PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFS---ERKQPGNKP 156 (250)
T ss_dssp GGGGGGGGGGHHH-HS-TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSE---EECESTTTT
T ss_pred ccHHHHHHhhhHH-HH-hhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchh---hcccCcccc
Confidence 4456667775544 44 5665 999999999999987766532 11222233000 0000000 000112246
Q ss_pred ccceeEEEEecChhHHH-HHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhhhh
Q 018302 237 YICSCMIYLRPTDGAKL-VMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEE 315 (358)
Q Consensus 237 ~iNsGf~~~R~T~~t~~-~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~~~ 315 (358)
.+|+|++.+.++.-... +.+.+.+.+.... ......||.++|.++. -++..||...-.....+-........
T Consensus 157 ~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~DQ~~ln~~~~-----~~~~~L~~~~N~~~~~~~~~~~~~~~ 229 (250)
T PF01501_consen 157 YFNSGVMLFNPSKWRKENILQKLIEWLEQNG--MKLGFPDQDILNIVFY-----GNIKPLPCRYNCQPSWYNQSDDYFNP 229 (250)
T ss_dssp SEEEEEEEEEHHHHHHHHHHHHHHHHHHHTT--TT-SSCHHHHHHHHHT-----TGEEEEEGGGSEEHHHHHHTHHHHHH
T ss_pred cccCcEEEEeechhhhhhhhhhhhhhhhhcc--cccCcCchHHHhhhcc-----ceeEEECchhccccccccccchhhHh
Confidence 89999999998866554 4444455544321 0235789999999986 24556665422100001000000123
Q ss_pred cCCceEEEEeCC
Q 018302 316 TKGKHVIIHNNY 327 (358)
Q Consensus 316 ~~~~p~~VH~n~ 327 (358)
...++.++|.+.
T Consensus 230 ~~~~~~iiHy~g 241 (250)
T PF01501_consen 230 ILEDAKIIHYSG 241 (250)
T ss_dssp HGCC-SEEE--S
T ss_pred hcCCeEEEEeCC
Confidence 457899999654
No 8
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=97.20 E-value=0.00031 Score=65.67 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=22.5
Q ss_pred HHHhhHHHHHHHHHHcC---CcEEEeecceeeecCCcc---cccCC--------Cceee-ecCCcccCC-CCCCCCCCCC
Q 018302 167 NFTSRRPCHLLHILELG---YNVMYNDVDMVWLKDPFP---YLQGD--------HDVYF-TDDMAAVKP-LDHSHDLPPP 230 (358)
Q Consensus 167 ~~~~~K~~~l~~lL~~G---y~Vl~sDvDvVWlrdPl~---~~~~~--------~Dv~~-s~D~~~~~~-~~~~~~~p~~ 230 (358)
..+|.|+-++++.+..= -=|++.|.|++.+.-=++ ++... .|+.+ .-+...... .....+..-.
T Consensus 58 ~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li 137 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLI 137 (239)
T ss_dssp HHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE------------------------------------------------
T ss_pred ChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45699999999998652 349999999988652132 22210 01100 001000000 0000000000
Q ss_pred CCCCCcccceeEEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCC-ccEEEeccCCCcCCCceeeec
Q 018302 231 GKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAG-QVDLYLLPQSAFPTGGLYFKN 309 (358)
Q Consensus 231 g~~~~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~-~l~v~~Lp~~~FpsG~~yf~~ 309 (358)
-......+|+|+|++|.++-++.|++.|.+.+............||.||..++..... .-++.++|+..|.+ |-..
T Consensus 138 ~t~d~~gLNtGsFliRns~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~ns---y~~~ 214 (239)
T PF05637_consen 138 ITQDWNGLNTGSFLIRNSPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWFNS---YPED 214 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 0112346999999999999999999999976543211111235799999999976532 34567889887732 2111
Q ss_pred chhhhhcCCceEEEEeCCcC
Q 018302 310 QTWVEETKGKHVIIHNNYIT 329 (358)
Q Consensus 310 ~~~~~~~~~~p~~VH~n~~~ 329 (358)
.. ...-..+.++||..-|.
T Consensus 215 ~~-~~~~~~GDfvvhfaGC~ 233 (239)
T PF05637_consen 215 EC-NYQYKEGDFVVHFAGCK 233 (239)
T ss_dssp --------------------
T ss_pred cc-ccccccccccccccccc
Confidence 10 01234568999977663
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=97.08 E-value=0.021 Score=54.72 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=101.7
Q ss_pred EEEEEeCcchHHHHHHHHHHhhhc-CCcccEEEEEec--HHHHHHHhccC--CCcEEe-cCCCCCcccccc-cCchhHHH
Q 018302 95 IIVCAVSQPYLPFLNNWLISISRQ-KHQDQVLVIAED--YATLYKVNGRW--PGHAVL-VPPAPDSQTAHK-FGSQGFFN 167 (358)
Q Consensus 95 VIvt~~N~~~~~~~~Nwl~sl~~~-g~~~~vlVvAlD--~~a~~~~~~~~--pg~~v~-~~~~~~~~~~~~-~gs~~f~~ 167 (358)
.||+.. ..|.+.+.+-+.|+-.- ...-++-|++.+ ++..+.+.+.+ ++|.+. .... +...... ..+..|..
T Consensus 4 ~iv~~~-~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~-~~~~~~~~~~~~~~s~ 81 (280)
T cd06431 4 AIVCAG-YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAE-ELKSRVSWIPNKHYSG 81 (280)
T ss_pred EEEEcc-CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhH-HhhhhhccCcccchhh
Confidence 466666 88888888888887543 211244455532 34444554332 244432 2211 0000000 11112221
Q ss_pred H-HhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCC-----Cceeee-cCCcc--cCC-CCCCCCCCCCCCCCCc
Q 018302 168 F-TSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD-----HDVYFT-DDMAA--VKP-LDHSHDLPPPGKKGRT 236 (358)
Q Consensus 168 ~-~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~-----~Dv~~s-~D~~~--~~~-~~~~~~~p~~g~~~~~ 236 (358)
. +..|. ++-++|..-+ .|++.|+|+|...|..+.+... .-+... .|... ... .......+. .+.
T Consensus 82 ~y~y~RL-~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~----~~~ 156 (280)
T cd06431 82 IYGLMKL-VLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPA----LGR 156 (280)
T ss_pred HHHHHHH-HHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcc----ccc
Confidence 1 22343 3445666445 5999999999999987655431 112221 22110 000 000000111 124
Q ss_pred ccceeEEEEecCh-hHHHHHHHHHHHHHcCcc-ccCCCCCChHHHHHHHhhcCCccEEEeccCCC-cCCCceeeecchhh
Q 018302 237 YICSCMIYLRPTD-GAKLVMKKWIEELQAEPW-SKAKKANDQPAFNWALNKTAGQVDLYLLPQSA-FPTGGLYFKNQTWV 313 (358)
Q Consensus 237 ~iNsGf~~~R~T~-~t~~~~~~w~~~l~~~~~-~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~-FpsG~~yf~~~~~~ 313 (358)
++|+|+|.+--.. +-..+.++|.....+... .......||+++|.++.+... -+..||... +..|..+..+. .
T Consensus 157 yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~--~~~~L~~~wN~~~~~~~~~~~--~ 232 (280)
T cd06431 157 GFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPF--LVYQLPCAWNVQLSDHTRSEQ--C 232 (280)
T ss_pred ceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcc--eeEECCCccccccCccchHhH--h
Confidence 8999999984321 111222333322111000 002467899999999965421 134566531 11121111111 1
Q ss_pred hhcCCceEEEEeCC
Q 018302 314 EETKGKHVIIHNNY 327 (358)
Q Consensus 314 ~~~~~~p~~VH~n~ 327 (358)
......|.++|.+.
T Consensus 233 ~~~~~~p~IIHf~g 246 (280)
T cd06431 233 YRDVSDLKVIHWNS 246 (280)
T ss_pred hcCcCCCEEEEeCC
Confidence 11245799999874
No 10
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=97.05 E-value=0.042 Score=53.15 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=80.9
Q ss_pred HHHHHHcCC-cEEEeecceeeecCCcccccC--C-Cc--eeee-cCCcc--cCCCCCCCCCCCCCCCCCcccceeEEEEe
Q 018302 176 LLHILELGY-NVMYNDVDMVWLKDPFPYLQG--D-HD--VYFT-DDMAA--VKPLDHSHDLPPPGKKGRTYICSCMIYLR 246 (358)
Q Consensus 176 l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~--~-~D--v~~s-~D~~~--~~~~~~~~~~p~~g~~~~~~iNsGf~~~R 246 (358)
+-++|. -+ .||+.|+||+..+|.-+.+.- + .| +... .|... .+-+......+..| ...+|+|+|++-
T Consensus 90 ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~---~~gFNSGVmLmN 165 (304)
T cd06430 90 LPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYG---KTGVNSGVMLMN 165 (304)
T ss_pred HHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCccc---ccccccceeeee
Confidence 334565 44 699999999999987665542 1 11 2211 12110 00000000011111 234999999985
Q ss_pred cChhH------------HHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCC--CcCCCceeeecchh
Q 018302 247 PTDGA------------KLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQS--AFPTGGLYFKNQTW 312 (358)
Q Consensus 247 ~T~~t------------~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~--~FpsG~~yf~~~~~ 312 (358)
=+.=- ..+-+.|.+.+.+.. ..-...||+++|.++.+... ++..||.. +-| .+..|... .
T Consensus 166 L~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~DQDiLN~v~~~~p~--~~~~Lp~~wN~~~-d~~~y~~~-~ 239 (304)
T cd06430 166 LTRMRRKYFKNDMTPVGLRWEEILMPLYKKYK--LKITWGDQDLINIIFHHNPE--MLYVFPCHWNYRP-DHCMYGSN-C 239 (304)
T ss_pred HHHHHhhhcccccchhhhhHHHHHHHHHHhcc--cCCCCCCHHHHHHHHcCCCC--eEEEcCccccCCc-cceeeccc-c
Confidence 43211 233445665555431 12356899999999976432 46667753 222 33333322 1
Q ss_pred hhhcCCceEEEEeCCcCChHHHHHHHHH
Q 018302 313 VEETKGKHVIIHNNYITGFEKKIKRFRD 340 (358)
Q Consensus 313 ~~~~~~~p~~VH~n~~~g~~~K~~rlre 340 (358)
......++.++|.|-..-...|...+|.
T Consensus 240 ~~~~~~~~~~~H~n~~~~~~~~~~~f~~ 267 (304)
T cd06430 240 KAAEEEGVFILHGNRGVYHSDKQPAFRA 267 (304)
T ss_pred cccccccceEEEcCCCCCCCccchHHHH
Confidence 1123457999998865445566666654
No 11
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.011 Score=57.80 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=96.0
Q ss_pred EEEEeCcchHHHHHHHH----HHhhhcCCcccEEEEEecHHHHHHHhccC-C-CcE-EecCCCCCccccccc--CchhHH
Q 018302 96 IVCAVSQPYLPFLNNWL----ISISRQKHQDQVLVIAEDYATLYKVNGRW-P-GHA-VLVPPAPDSQTAHKF--GSQGFF 166 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl----~sl~~~g~~~~vlVvAlD~~a~~~~~~~~-p-g~~-v~~~~~~~~~~~~~~--gs~~f~ 166 (358)
|+..++..|+.=+..-+ ++-++..+.=|+++.-.+++-..++++.- | ++. .+. ..+.+.-..+ -++.|.
T Consensus 5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~--~id~~~~~~~~~~~~~~s 82 (325)
T COG1442 5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLE--VIDIEPFLDYPPFTKRFS 82 (325)
T ss_pred EEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeE--EEechhhhcccccccchH
Confidence 66678888876444444 44443333447788888888877777531 1 111 111 0111111111 256666
Q ss_pred HHHhhHHHHHHHHHHcCCcEEEeecceeeecCCcccccCCC-c--eeeecCCcccCCCCCCCCCCCCCCCCCcccceeEE
Q 018302 167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDH-D--VYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMI 243 (358)
Q Consensus 167 ~~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~~~-D--v~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~ 243 (358)
.|+..|.-+. +++...=.++++|+|||..+|--+.|.-+- + +.+..|...... .........+...+.+.|+|++
T Consensus 83 ~~v~~R~fia-dlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~-~~~~~~~~~~~~~~~yFNaG~l 160 (325)
T COG1442 83 KMVLVRYFLA-DLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYM-KEGALRLEKGDLEGSYFNAGVL 160 (325)
T ss_pred HHHHHHHHHH-HhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhh-hhhhhHhhhcccccccCcccee
Confidence 7777776544 566666679999999999998755554321 1 111223211000 0000000111223567999999
Q ss_pred EEec-ChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcC
Q 018302 244 YLRP-TDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTA 287 (358)
Q Consensus 244 ~~R~-T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~ 287 (358)
++-- .=+-..+.+..++.+.+.. ..-...||.++|.++.+..
T Consensus 161 linl~~W~~~~i~~k~i~~~~~~~--~~~~~~DQdiLN~i~~~~~ 203 (325)
T COG1442 161 LINLKLWREENIFEKLIELLKDKE--NDLLYPDQDILNMIFEDRV 203 (325)
T ss_pred eehHHHHHHhhhHHHHHHHHhccc--cccCCccccHHHHHHHhhh
Confidence 9731 1111122222222322211 2346679999999997753
No 12
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=96.17 E-value=0.063 Score=52.69 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=102.9
Q ss_pred CeEEEEEeCcchHHHHHHHHHHhhhc--CCcccEEEEEe--cHHHHHHHh---ccCCC-cEEe-cCCC-C-CcccccccC
Q 018302 93 GTIIVCAVSQPYLPFLNNWLISISRQ--KHQDQVLVIAE--DYATLYKVN---GRWPG-HAVL-VPPA-P-DSQTAHKFG 161 (358)
Q Consensus 93 ~tVIvt~~N~~~~~~~~Nwl~sl~~~--g~~~~vlVvAl--D~~a~~~~~---~~~pg-~~v~-~~~~-~-~~~~~~~~g 161 (358)
..=|+..+|..|+.-+.--+.|+-.- +..=++-|++. +++..+.++ +.++. +... .+.. . +...
T Consensus 25 ~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~~~~~----- 99 (334)
T PRK15171 25 SLDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLKSLPS----- 99 (334)
T ss_pred ceeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHhCCcc-----
Confidence 35588889999999888888887533 21114455542 234444443 23322 1111 1110 0 0111
Q ss_pred chhHHHHHhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCCC--c-eeee-cCCcccCCCCC-CCCCCCCCCCCC
Q 018302 162 SQGFFNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDH--D-VYFT-DDMAAVKPLDH-SHDLPPPGKKGR 235 (358)
Q Consensus 162 s~~f~~~~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~--D-v~~s-~D~~~~~~~~~-~~~~p~~g~~~~ 235 (358)
+..+...+..|.. +-++|...+ .||+.|+|+|-.+|.-+.+.-+- + +... .|.... .+.. .......+ ...
T Consensus 100 ~~~~s~atY~Rl~-ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~-~~~~~~~~l~~~~-~~~ 176 (334)
T PRK15171 100 TKNWTYATYFRFI-IADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAE-WWSKRAQSLQTPG-LAS 176 (334)
T ss_pred cCcCCHHHHHHHH-HHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchh-HHHHHHHhcCCcc-ccc
Confidence 1122233444433 335554456 49999999999998776665431 2 1111 222100 0000 00000001 013
Q ss_pred cccceeEEEEecCh-hHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCc-CCCceeeecchhh
Q 018302 236 TYICSCMIYLRPTD-GAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAF-PTGGLYFKNQTWV 313 (358)
Q Consensus 236 ~~iNsGf~~~R~T~-~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~F-psG~~yf~~~~~~ 313 (358)
.++|+|++++--.. +-..+.+++.+.+.+......-...||.++|.++.+ ++..||...= ..|..+.......
T Consensus 177 ~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~-----~~~~L~~~wN~~~~~~~~~~~~~~ 251 (334)
T PRK15171 177 GYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAG-----KVKFIDAKYNTQFSLNYELKDSVI 251 (334)
T ss_pred cceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcC-----CeEECCHhhCCccchhHHHHhccc
Confidence 48999999985322 112233333333332100001245799999999965 4556665321 1111111000000
Q ss_pred hhcCCceEEEEeC
Q 018302 314 EETKGKHVIIHNN 326 (358)
Q Consensus 314 ~~~~~~p~~VH~n 326 (358)
......|.++|-+
T Consensus 252 ~~~~~~p~IIHy~ 264 (334)
T PRK15171 252 NPVNDETVFIHYI 264 (334)
T ss_pred ccccCCCEEEEEC
Confidence 1123468999987
No 13
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=96.08 E-value=0.16 Score=47.69 Aligned_cols=140 Identities=22% Similarity=0.259 Sum_probs=71.7
Q ss_pred HHHHHHHcCC-cEEEeecceeeecCCcccccCC-Cc-eee-ecCCcccCCCCC-C---CCCCCCCCCCCcccceeEEEE-
Q 018302 175 HLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD-HD-VYF-TDDMAAVKPLDH-S---HDLPPPGKKGRTYICSCMIYL- 245 (358)
Q Consensus 175 ~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~-~D-v~~-s~D~~~~~~~~~-~---~~~p~~g~~~~~~iNsGf~~~- 245 (358)
++..+|...+ .|++.|+|+|...|--+.+.-+ .| +.. ..|+........ . .+.-..+-.+..+.|+|+|++
T Consensus 87 ~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGVmliN 166 (248)
T cd06432 87 FLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISALYVVD 166 (248)
T ss_pred HHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceeeEEEe
Confidence 3344887777 5999999999987755544432 12 111 122211000000 0 000000101234899999998
Q ss_pred ----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhh-hhcCCce
Q 018302 246 ----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWV-EETKGKH 320 (358)
Q Consensus 246 ----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~-~~~~~~p 320 (358)
|...-+.++.+ ..+.+.+.+ ..-...||+++|.++.+. ++..||... .++. .|. .+.+.++
T Consensus 167 L~~wR~~~i~~~~~~-~~~~l~~~~--~~l~~~DQDiLN~v~~~~----~i~~Lp~~w-----~~~~--~~~~~~~~~~~ 232 (248)
T cd06432 167 LKRFRRIAAGDRLRG-QYQQLSQDP--NSLANLDQDLPNNMQHQV----PIFSLPQEW-----LWCE--TWCSDESKKKA 232 (248)
T ss_pred HHHHHHHhHHHHHHH-HHHHHhcCC--CccccCCchhhHHHhccC----CeEECChHH-----HHHH--HHhcccccCcc
Confidence 33332222221 112222211 113557999999999443 477788663 1222 242 3446789
Q ss_pred EEEEeCCc
Q 018302 321 VIIHNNYI 328 (358)
Q Consensus 321 ~~VH~n~~ 328 (358)
-++|..|.
T Consensus 233 ~~~~~~~~ 240 (248)
T cd06432 233 KTIDLCNN 240 (248)
T ss_pred ceeecccC
Confidence 99997765
No 14
>PLN03181 glycosyltransferase; Provisional
Probab=95.97 E-value=0.14 Score=51.12 Aligned_cols=107 Identities=18% Similarity=0.105 Sum_probs=65.6
Q ss_pred HHhhHHHHHHHHHHcC---CcEEEeecceeeecCCcccc--cC--CCceeeecCCcccCCCCCCCCCCCCCCCCCcccce
Q 018302 168 FTSRRPCHLLHILELG---YNVMYNDVDMVWLKDPFPYL--QG--DHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICS 240 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~G---y~Vl~sDvDvVWlrdPl~~~--~~--~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNs 240 (358)
..|.|+-++++.+..= -=+++.|.|++.+ ||---+ .+ +..+++ .+. |. ..+.. ..-..+|+
T Consensus 181 ~~WaKipalRaAM~a~PeAEWfWWLDsDALIM-Np~~sLPl~ry~~~NLvv--hg~---p~---~vy~~---qdw~GlN~ 248 (453)
T PLN03181 181 SYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT-DMDFKLPLHRYRDHNLVV--HGW---PK---LIYEK---RSWTALNA 248 (453)
T ss_pred hhhhHHHHHHHHHHHCCCceEEEEecCCceee-cCCCCCCHhhcCCccccc--cCC---cc---ccccc---ccccccce
Confidence 4678999998776652 2399999999887 552221 11 122221 000 00 00000 01246899
Q ss_pred eEEEEecChhHHHHHHHHHHHHHcCcc--------------ccCCCCCChHHHHHHHhhc
Q 018302 241 CMIYLRPTDGAKLVMKKWIEELQAEPW--------------SKAKKANDQPAFNWALNKT 286 (358)
Q Consensus 241 Gf~~~R~T~~t~~~~~~w~~~l~~~~~--------------~~~~~~~DQ~afN~ll~~~ 286 (358)
|.|++|.+.=+..|++.|..+=-..|. ....+.+||.++-.+|-..
T Consensus 249 GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~ 308 (453)
T PLN03181 249 GVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKH 308 (453)
T ss_pred eeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhc
Confidence 999999999999999999863221111 1135788999999888654
No 15
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=95.79 E-value=0.057 Score=53.75 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=74.7
Q ss_pred HHhhHHHHHHHHHHcCC---cEEEeecceeeecCCccc-ccC--CCceee-ecCCcccCCCCCCCCCCCCCCCCCcccce
Q 018302 168 FTSRRPCHLLHILELGY---NVMYNDVDMVWLKDPFPY-LQG--DHDVYF-TDDMAAVKPLDHSHDLPPPGKKGRTYICS 240 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy---~Vl~sDvDvVWlrdPl~~-~~~--~~Dv~~-s~D~~~~~~~~~~~~~p~~g~~~~~~iNs 240 (358)
-.|.|+-++++++..-- =+++.|.|++.+.-.+.. +.+ +.++++ ..+... + . ...-..+|+
T Consensus 180 ~~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l---~------~---~kdW~GLNt 247 (429)
T PLN03182 180 GFWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELV---Y------D---QKSWIGLNT 247 (429)
T ss_pred cchhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhh---e------e---ccccCccce
Confidence 45889999999887632 389999999997643321 111 222222 111100 0 0 011235899
Q ss_pred eEEEEecChhHHHHHHHHHHHHHcCcc--------------ccCCCCCChHHHHHHHhhcC--CccEEEeccCCCc
Q 018302 241 CMIYLRPTDGAKLVMKKWIEELQAEPW--------------SKAKKANDQPAFNWALNKTA--GQVDLYLLPQSAF 300 (358)
Q Consensus 241 Gf~~~R~T~~t~~~~~~w~~~l~~~~~--------------~~~~~~~DQ~afN~ll~~~~--~~l~v~~Lp~~~F 300 (358)
|+|++|.++=+..|++.|...--..|. .-..+..||.|+-.+|.... -+-++++-+.-+|
T Consensus 248 GsFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~kv~le~~y~l 323 (429)
T PLN03182 248 GSFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDKVYLENSYYL 323 (429)
T ss_pred eeEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccceEEeeccee
Confidence 999999999999999999764331111 11357889999999996653 3345554444444
No 16
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=92.44 E-value=0.72 Score=42.14 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHhhHHHHHHHHHHcCCcEEEeecceeeecCCc----ccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCccccee
Q 018302 166 FNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPF----PYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSC 241 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl----~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsG 241 (358)
...+-+|--++.++|..==-||+.|+||.-. ||- +++....|+.+- |... ...+.+|
T Consensus 25 kd~fFrRHCvva~~L~~~~~vlflDaDigVv-Np~~~iEefid~~~Di~fy-dR~~-----------------n~Ei~ag 85 (222)
T PF03314_consen 25 KDKFFRRHCVVAKILPEYDWVLFLDADIGVV-NPNRRIEEFIDEGYDIIFY-DRFF-----------------NWEIAAG 85 (222)
T ss_pred hhHHHHHHHHHHHHhccCCEEEEEcCCceee-cCcccHHHhcCCCCcEEEE-eccc-----------------chhhhhc
Confidence 3466778888889998644599999999764 674 355556777553 3221 1247889
Q ss_pred EEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhh
Q 018302 242 MIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK 285 (358)
Q Consensus 242 f~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~ 285 (358)
-|++|.|+.++.|++.|.+.-...|-| -...|-.|+...+.+
T Consensus 86 sYlvkNT~~~~~fl~~~a~~E~~lP~s--fhGtDNGAlH~~L~e 127 (222)
T PF03314_consen 86 SYLVKNTEYSRDFLKEWADYEFKLPNS--FHGTDNGALHIFLAE 127 (222)
T ss_pred cceeeCCHHHHHHHHHHhhhCccCCCc--cccCccHHHHHHHHH
Confidence 999999999999999999874443322 245687888777754
No 17
>PLN02829 Probable galacturonosyltransferase
Probab=88.74 E-value=2.7 Score=44.28 Aligned_cols=146 Identities=17% Similarity=0.083 Sum_probs=73.9
Q ss_pred HhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCC--Ccee-eecCCccc-CCCCCCC--CCCCC--C-CCCCccc
Q 018302 169 TSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD--HDVY-FTDDMAAV-KPLDHSH--DLPPP--G-KKGRTYI 238 (358)
Q Consensus 169 ~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~--~Dv~-~s~D~~~~-~~~~~~~--~~p~~--g-~~~~~~i 238 (358)
+..|.. +-+++. .+ .|+|.|.|||-.+|--+.+.-+ ..+. +..|+... ..+.... ..|.. + .....+.
T Consensus 444 nY~Rfy-LPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyF 521 (639)
T PLN02829 444 NHLRFY-LPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGW 521 (639)
T ss_pred HHHHHH-HHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccce
Confidence 334433 345666 34 6999999999999987665532 1122 22333110 0000000 00000 0 0113468
Q ss_pred ceeEEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhh
Q 018302 239 CSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWV 313 (358)
Q Consensus 239 NsGf~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~ 313 (358)
|+|++++ |-..-+.++. .|++.-.. ...|||.++|-.+---.+ ++..||...-..|-.|... -.
T Consensus 522 NSGVmVINL~~WRe~nITe~y~-~wm~~n~~------r~L~dlgaLPp~Ll~F~g--~i~~LD~rWNv~GLGy~~~--v~ 590 (639)
T PLN02829 522 AYGMNVFDLDEWKRQNITEVYH-SWQKLNHD------RQLWKLGTLPPGLITFWK--RTYPLDRSWHVLGLGYNPN--VN 590 (639)
T ss_pred ecceEEEeHHHHHHhChHHHHH-HHHHHccC------CccccccCCChHHHHhcC--ceEecChhheecCCCCCcc--cc
Confidence 9999998 5555555544 67754322 467999999976632222 2555554322223222111 11
Q ss_pred hhcCCceEEEEeCC
Q 018302 314 EETKGKHVIIHNNY 327 (358)
Q Consensus 314 ~~~~~~p~~VH~n~ 327 (358)
.+....+.++|.|.
T Consensus 591 ~~~i~~aaIIHynG 604 (639)
T PLN02829 591 QRDIERAAVIHYNG 604 (639)
T ss_pred hhcccCCeEEEECC
Confidence 23455789999774
No 18
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=82.83 E-value=2.7 Score=39.75 Aligned_cols=130 Identities=18% Similarity=0.033 Sum_probs=66.5
Q ss_pred HHHhhHHHHHHHHHHcCCcEEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEe
Q 018302 167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLR 246 (358)
Q Consensus 167 ~~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R 246 (358)
.++..|..+- +++..==.|++.|+|+|-.+|--+.+..+ +. +... ... ..+.|+|++++-
T Consensus 99 ~~~y~Rl~ip-~llp~~~kvlYLD~Dviv~~dl~eL~~~d--l~---~~~~-aav-------------~dyfNsGV~lin 158 (257)
T cd06429 99 LLNFARFYLP-ELFPKLEKVIYLDDDVVVQKDLTELWNTD--LG---GGVA-GAV-------------ETSWNPGVNVVN 158 (257)
T ss_pred HHHHHHHHHH-HHhhhhCeEEEEeCCEEEeCCHHHHhhCC--CC---CCEE-EEE-------------hhhcccceEEEe
Confidence 3444454433 34432126999999999999877766542 20 1111 000 115799999984
Q ss_pred c-----ChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCC--CcCCCceeeecchhhhhcCCc
Q 018302 247 P-----TDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQS--AFPTGGLYFKNQTWVEETKGK 319 (358)
Q Consensus 247 ~-----T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~--~FpsG~~yf~~~~~~~~~~~~ 319 (358)
. ..-+.+++ .|++...... .......||+++|.++.+. +..||.. ...-|..+... .+...+
T Consensus 159 l~~wr~~~i~~~~~-~~~~~~~~~~-~~~~~~~dqd~ln~~~~~~-----~~~L~~~wN~~~l~~~~~~~----~~~~~~ 227 (257)
T cd06429 159 LTEWRRQNVTETYE-KWMELNQEEE-VTLWKLITLPPGLIVFYGL-----TSPLDPSWHVRGLGYNYGIR----PQDIKA 227 (257)
T ss_pred HHHHHhccHHHHHH-HHHHHhhhcc-cchhhcCCccHHHHHccCe-----eEECChHHcccCCccccccc----ccccCC
Confidence 3 33344443 3544332210 0012446899999888543 4445542 11111111111 122347
Q ss_pred eEEEEeCC
Q 018302 320 HVIIHNNY 327 (358)
Q Consensus 320 p~~VH~n~ 327 (358)
|.++|.+-
T Consensus 228 ~~IIHy~G 235 (257)
T cd06429 228 AAVLHFNG 235 (257)
T ss_pred cEEEEECC
Confidence 99999774
No 19
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=78.78 E-value=7.9 Score=40.94 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=77.0
Q ss_pred ccCchhHHHH-HhhHHHHHHHHHHcCCcEEEeecceeeecCCcccccCC--Ccee-eecCCccc-CCCCCCCC--CCCC-
Q 018302 159 KFGSQGFFNF-TSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGD--HDVY-FTDDMAAV-KPLDHSHD--LPPP- 230 (358)
Q Consensus 159 ~~gs~~f~~~-~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~~--~Dv~-~s~D~~~~-~~~~~~~~--~p~~- 230 (358)
++..+.|..+ +..|. ++-+++..=-.|+|.|.|||-.+|.-+.+.-+ ..+. +..|+... ..+....+ .|..
T Consensus 451 k~r~p~ylS~lnY~Rf-~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~ 529 (657)
T PLN02910 451 KYRNPKYLSMLNHLRF-YLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKIS 529 (657)
T ss_pred ccCCcchhhHHHHHHH-HHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhh
Confidence 3444444332 22333 34456663226999999999999987655432 1122 22333210 00000000 0000
Q ss_pred --CCCCCcccceeEEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCC
Q 018302 231 --GKKGRTYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTG 303 (358)
Q Consensus 231 --g~~~~~~iNsGf~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG 303 (358)
-.....+.|+|++++ |-..-+. .++.|.+.-. ....+||.++|-.+--..+ ++..||...-..|
T Consensus 530 ~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~eln~------~~~L~dqgsLPpgLLvF~g--~i~pLD~rWNv~G 600 (657)
T PLN02910 530 ENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDLNE------DRTLWKLGSLPPGLITFYN--LTYPLDRSWHVLG 600 (657)
T ss_pred hccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHhcc------cccccccCCCChHHHHHhC--ceeecCchheecC
Confidence 001234677899998 4444454 7777876532 2578999999843211111 2345554322223
Q ss_pred ceeeecchhhhhcCCceEEEEeCC
Q 018302 304 GLYFKNQTWVEETKGKHVIIHNNY 327 (358)
Q Consensus 304 ~~yf~~~~~~~~~~~~p~~VH~n~ 327 (358)
-.| .... .......|.++|.|.
T Consensus 601 LGy-d~~v-~~~~i~~AAVLHynG 622 (657)
T PLN02910 601 LGY-DPAL-NQTEIENAAVVHYNG 622 (657)
T ss_pred CCC-Cccc-ccccccCcEEEEeCC
Confidence 222 1111 123455799999774
No 20
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=78.57 E-value=16 Score=34.71 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=65.9
Q ss_pred HHHhhhcc--C-CeEEEEEeCcchHHHHHHHHHHhhhc---CCcccEEEEEecHHH-HHHHhccCCCc--EEecCCCCCc
Q 018302 84 QAASFVAK--N-GTIIVCAVSQPYLPFLNNWLISISRQ---KHQDQVLVIAEDYAT-LYKVNGRWPGH--AVLVPPAPDS 154 (358)
Q Consensus 84 ~ll~~~A~--~-~tVIvt~~N~~~~~~~~Nwl~sl~~~---g~~~~vlVvAlD~~a-~~~~~~~~pg~--~v~~~~~~~~ 154 (358)
++|+..-+ + +.-|+.++-..|..|++.|++|.++. |..-++.|.+ |... .... +..|+. .|+.-
T Consensus 23 ~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFT-D~~~~~p~v-~lg~~r~~~V~~v----- 95 (271)
T cd02515 23 DVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFT-DKPAAVPEV-ELGPGRRLTVLKI----- 95 (271)
T ss_pred HHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEe-CCcccCccc-ccCCCceeEEEEe-----
Confidence 44555543 3 34455667788999999999999985 7667888888 5432 2221 122332 22221
Q ss_pred ccccccCchhHHHHHhhHHHHHHHHHH--c--CCc-EEEeecceeeecCC
Q 018302 155 QTAHKFGSQGFFNFTSRRPCHLLHILE--L--GYN-VMYNDVDMVWLKDP 199 (358)
Q Consensus 155 ~~~~~~gs~~f~~~~~~K~~~l~~lL~--~--Gy~-Vl~sDvDvVWlrdP 199 (358)
-....|...+.+|..++.+..+ . -+| +.+.|+|+++.++-
T Consensus 96 -----~~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~i 140 (271)
T cd02515 96 -----AEESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPF 140 (271)
T ss_pred -----ccccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecC
Confidence 1124566788888888877766 2 345 67889999997753
No 21
>PLN02659 Probable galacturonosyltransferase
Probab=77.93 E-value=10 Score=39.42 Aligned_cols=137 Identities=17% Similarity=0.109 Sum_probs=66.4
Q ss_pred HHHHHHcCC-cEEEeecceeeecCCcccccCCC--ceee-ecCCccc------CCCCC--CCCCCCC---CCCCCcccce
Q 018302 176 LLHILELGY-NVMYNDVDMVWLKDPFPYLQGDH--DVYF-TDDMAAV------KPLDH--SHDLPPP---GKKGRTYICS 240 (358)
Q Consensus 176 l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~--Dv~~-s~D~~~~------~~~~~--~~~~p~~---g~~~~~~iNs 240 (358)
+-+++. .+ .|+|.|.|||-.+|--+.+.-+- .+.. ..|+... ..+.. ..+.|.. -.....+.|+
T Consensus 337 IPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNs 415 (534)
T PLN02659 337 LPELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAY 415 (534)
T ss_pred HHHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceec
Confidence 334555 24 59999999999998766555321 1221 1232100 00000 0000000 0011347889
Q ss_pred eEEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHH---HHHhhcCCccEEEeccCC--CcCCCceeeecc
Q 018302 241 CMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN---WALNKTAGQVDLYLLPQS--AFPTGGLYFKNQ 310 (358)
Q Consensus 241 Gf~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN---~ll~~~~~~l~v~~Lp~~--~FpsG~~yf~~~ 310 (358)
|++++ |-..-+.++++ |++....+ +-..+||.++| .++.+ ++..||.. .+..|..+ ..
T Consensus 416 GVlLINLk~WRe~nITek~l~-~l~~n~~~----~l~l~DQdaLp~~LivF~g-----~v~~LD~rWN~~gLg~~~--~~ 483 (534)
T PLN02659 416 GMNIFDLEAWRKTNISSTYHH-WLEENLKS----DLSLWQLGTLPPGLIAFHG-----HVHVIDPFWHMLGLGYQE--NT 483 (534)
T ss_pred ceeEeeHHHHHhcChHHHHHH-HHHhcccc----cccccccccchHHHHHhcC-----CEEECChhheecCCcccc--cc
Confidence 99998 55554554433 44332111 24678999996 33332 34555543 22222211 11
Q ss_pred hhhhhcCCceEEEEeCC
Q 018302 311 TWVEETKGKHVIIHNNY 327 (358)
Q Consensus 311 ~~~~~~~~~p~~VH~n~ 327 (358)
..+....|.++|-|-
T Consensus 484 --~~~~i~~paIIHYnG 498 (534)
T PLN02659 484 --SLADAESAGVVHFNG 498 (534)
T ss_pred --cccccCCcEEEEECC
Confidence 112345799999774
No 22
>PLN02870 Probable galacturonosyltransferase
Probab=76.92 E-value=13 Score=38.63 Aligned_cols=138 Identities=19% Similarity=0.131 Sum_probs=66.5
Q ss_pred HHHHHcCC-cEEEeecceeeecCCcccccCCC-c-eeee-cCCccc------CCCCC----CCCCCCCCC-CCCccccee
Q 018302 177 LHILELGY-NVMYNDVDMVWLKDPFPYLQGDH-D-VYFT-DDMAAV------KPLDH----SHDLPPPGK-KGRTYICSC 241 (358)
Q Consensus 177 ~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~-D-v~~s-~D~~~~------~~~~~----~~~~p~~g~-~~~~~iNsG 241 (358)
-+++. -+ .|+|.|.|||-.+|--+.+.-+- + +... .|+... ..+.. ++.....+- ....+.|+|
T Consensus 337 PelLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSG 415 (533)
T PLN02870 337 PELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYG 415 (533)
T ss_pred HHHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeecc
Confidence 34555 24 69999999999999877665431 1 2211 232110 00000 000000000 013367899
Q ss_pred EEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHH---HHHhhcCCccEEEeccCCCcCCCceeeecchhh
Q 018302 242 MIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN---WALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWV 313 (358)
Q Consensus 242 f~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN---~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~ 313 (358)
++++ |-..-+.++++ |++.-... +...+||.++| .++.+ ++..||...=..|-.|.... .
T Consensus 416 VlLINL~~WRe~nITek~~~-~l~~n~~~----~l~l~DQdaLp~~livf~g-----~v~~LD~rWN~~gLgy~~~~--~ 483 (533)
T PLN02870 416 MNIFDLRAWRKTNIRETYHS-WLKENLKS----NLTMWKLGTLPPALIAFKG-----HVHPIDPSWHMLGLGYQSKT--N 483 (533)
T ss_pred chhccHHHHHHcChHHHHHH-HHHhhhhc----CceecccccccHhHHHhcC-----ceEECChHHhcCCCCCcccc--c
Confidence 9987 54444544433 44332211 24679999995 33322 35556543211122221111 1
Q ss_pred hhcCCceEEEEeCC
Q 018302 314 EETKGKHVIIHNNY 327 (358)
Q Consensus 314 ~~~~~~p~~VH~n~ 327 (358)
.+...+|.++|-|-
T Consensus 484 ~~~i~~aaIIHY~G 497 (533)
T PLN02870 484 IESVKKAAVIHYNG 497 (533)
T ss_pred ccccCCcEEEEECC
Confidence 23445799999764
No 23
>PLN02742 Probable galacturonosyltransferase
Probab=76.82 E-value=64 Score=33.75 Aligned_cols=148 Identities=16% Similarity=0.048 Sum_probs=73.4
Q ss_pred HHhhHHHHHHHHHHcCCcEEEeecceeeecCCcccccCCC-c-ee-eecCCcc-cCCCCCCCCC--CC---CCCCCCccc
Q 018302 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDH-D-VY-FTDDMAA-VKPLDHSHDL--PP---PGKKGRTYI 238 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~~~-D-v~-~s~D~~~-~~~~~~~~~~--p~---~g~~~~~~i 238 (358)
++..|.. +-+++..=-.|++.|+|||..+|-.+.+.-+- + +. ...|+.. ...+....++ |. .......+.
T Consensus 339 ~~y~R~~-lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~f 417 (534)
T PLN02742 339 LNHLRFY-IPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGW 417 (534)
T ss_pred HHHHHHH-HHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCcccc
Confidence 3444444 33455532269999999999999876665431 1 22 2234310 0001000000 00 000113467
Q ss_pred ceeEEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhh
Q 018302 239 CSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWV 313 (358)
Q Consensus 239 NsGf~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~ 313 (358)
|+|++.+ |-..-+. .++.|.+.-. ....+||.++|-.+--..+ ++..||..-=..|-.|..+. .
T Consensus 418 NsGV~ViDL~~WRe~nITe-~~~~w~e~n~------~~~l~d~gaLpp~LLaF~g--~~~~LD~rWNv~gLG~~~~v--~ 486 (534)
T PLN02742 418 AFGMNVFDLVAWRKANVTA-IYHYWQEQNV------DRTLWKLGTLPPGLLTFYG--LTEPLDRRWHVLGLGYDTNI--D 486 (534)
T ss_pred ccCcEEEeHHHHHhhcHHH-HHHHHHHhcc------ccccccccccchHHHHHcC--cceecChhheeccccccccc--c
Confidence 9999988 4444454 6677876432 2478899998865422111 23444432211122121111 1
Q ss_pred hhcCCceEEEEeCC
Q 018302 314 EETKGKHVIIHNNY 327 (358)
Q Consensus 314 ~~~~~~p~~VH~n~ 327 (358)
.+....|.++|.|.
T Consensus 487 ~~~i~~aaILHynG 500 (534)
T PLN02742 487 PRLIESAAVLHFNG 500 (534)
T ss_pred hhhccCCeEEEECC
Confidence 23456789999774
No 24
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=74.15 E-value=14 Score=35.07 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=52.1
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCcccE-EEEE----ecHHHHHHHhcc----CCCc-EEecCCCCCcccccccCchhH
Q 018302 96 IVCAVSQPYLPFLNNWLISISRQKHQDQV-LVIA----EDYATLYKVNGR----WPGH-AVLVPPAPDSQTAHKFGSQGF 165 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl~~~g~~~~v-lVvA----lD~~a~~~~~~~----~pg~-~v~~~~~~~~~~~~~~gs~~f 165 (358)
||++++..+..++...+..+|++|..=-| |+.+ ++++..+.+... .-++ +++.....+. .+...+|
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~----~~~~~~~ 79 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGK----SFSKKGF 79 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeecccccc----ccccCCc
Confidence 45555668888888999999998753344 3444 233443333320 0111 1111111111 0111111
Q ss_pred HHHHhhHHHHHHHHHHcCC-cEEEeecceeeecCCccccc
Q 018302 166 FNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQ 204 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~ 204 (358)
. .|+.. ++-.=+ +|++.|+|+|-++||-.+|.
T Consensus 80 ~----~K~lA---~l~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 80 Q----NKWLA---LLFSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred h----hhhhh---hhhCCcceEEEEcCCcccccCHHHHhc
Confidence 1 23322 233333 59999999999999988776
No 25
>PLN02867 Probable galacturonosyltransferase
Probab=70.93 E-value=36 Score=35.56 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=67.4
Q ss_pred HHHHHcCC-cEEEeecceeeecCCcccccCCC-c-e--eeecCCcc-----cCCCCCCCC--CCCC--C-CCCCccccee
Q 018302 177 LHILELGY-NVMYNDVDMVWLKDPFPYLQGDH-D-V--YFTDDMAA-----VKPLDHSHD--LPPP--G-KKGRTYICSC 241 (358)
Q Consensus 177 ~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~-D-v--~~s~D~~~-----~~~~~~~~~--~p~~--g-~~~~~~iNsG 241 (358)
-+++. -+ .|+|.|.|||-.+|--+.+.-+- + + .+.++... ...+....+ .|.. + .....+.|+|
T Consensus 339 PeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cYFNSG 417 (535)
T PLN02867 339 PELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWLYG 417 (535)
T ss_pred HHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcceecc
Confidence 35555 34 59999999999998877665431 1 1 11111100 000000000 0000 0 0113468999
Q ss_pred EEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhhhhc
Q 018302 242 MIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEET 316 (358)
Q Consensus 242 f~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~~~~ 316 (358)
++.+ |-..-+.++ ..|++.-... ....+||.++|..+--..+ ++..||...=..|-.|- ......+.
T Consensus 418 VmLINL~~WRe~nITek~-~~~Le~n~~~----~~~l~dqd~LN~~LlvF~g--~v~~LD~rWNv~gLgy~-~~~~~~~~ 489 (535)
T PLN02867 418 MNVFDLKAWRRTNITEAY-HKWLKLSLNS----GLQLWQPGALPPALLAFKG--HVHPIDPSWHVAGLGSR-PPEVPREI 489 (535)
T ss_pred eeeeeHHHHHHhcHHHHH-HHHHHhchhc----ccccccccccchHHHHhcC--cEEECChhhcccCCCcc-cccchhhh
Confidence 9998 433333333 3355433221 1367899999974421111 35566643211122121 11001223
Q ss_pred CCceEEEEeCC
Q 018302 317 KGKHVIIHNNY 327 (358)
Q Consensus 317 ~~~p~~VH~n~ 327 (358)
...|.++|.|-
T Consensus 490 i~~paIIHYnG 500 (535)
T PLN02867 490 LESAAVLHFSG 500 (535)
T ss_pred cCCcEEEEECC
Confidence 45799999874
No 26
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=70.65 E-value=19 Score=35.75 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=88.7
Q ss_pred HHHhhHHHHHHHHHHcCCc---EEEeecceeeecCC-cc---cccCC--Cceeeec-CCcccCC------------CCCC
Q 018302 167 NFTSRRPCHLLHILELGYN---VMYNDVDMVWLKDP-FP---YLQGD--HDVYFTD-DMAAVKP------------LDHS 224 (358)
Q Consensus 167 ~~~~~K~~~l~~lL~~Gy~---Vl~sDvDvVWlrdP-l~---~~~~~--~Dv~~s~-D~~~~~~------------~~~~ 224 (358)
...|.|+-+|++.+..=-+ +|+.|.|.+.+. | +. ++... -+..... |.-...+ .+..
T Consensus 157 ~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn-~~lsL~~~ilk~~~L~~~l~~nd~~~~~~~n~~~~~~~~~~~d~~ 235 (364)
T KOG4748|consen 157 PGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMN-PDLSLQDHILKPENLVTHLLRNDQKSINPLNIFRLRPRTPSLDDL 235 (364)
T ss_pred cchhHHhHHHHHHHHHCCCCcEEEEecccchhhC-cccchhHHhcCHHHHHHhhccccccccccCCccccccccccccch
Confidence 3578899999988876443 899999998764 3 21 11110 0000001 1000000 1111
Q ss_pred CCCCCCCCCCCcccceeEEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCC-ccEEEeccCCC---c
Q 018302 225 HDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAG-QVDLYLLPQSA---F 300 (358)
Q Consensus 225 ~~~p~~g~~~~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~-~l~v~~Lp~~~---F 300 (358)
.+....+..+...+|.|=+++|.++-++.+++.|-+-+-.. ......+|.++...+..+.. -=.+++||..+ |
T Consensus 236 ~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~---~~~~~~Eq~al~~~~e~h~~l~~~vgilp~r~ins~ 312 (364)
T KOG4748|consen 236 EDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYE---LLWGQKEQDALGHFLENHPQLHSHVGILPLRYINSY 312 (364)
T ss_pred hhhceecccCCCCccccceEEecCccchhHHHhccCHHHHh---hccchHHHHHHHHHHhhchhhhhheeeccHHHHhcC
Confidence 12222233345569999999999999999999987654332 12356799999988876521 11467777644 4
Q ss_pred CCCceeeecchhhhhcCCceEEEEeCCcCC
Q 018302 301 PTGGLYFKNQTWVEETKGKHVIIHNNYITG 330 (358)
Q Consensus 301 psG~~yf~~~~~~~~~~~~p~~VH~n~~~g 330 (358)
++|+-.+ .....++++|.--|-+
T Consensus 313 ~~~~~~~-------g~~egdlvvhFaGC~~ 335 (364)
T KOG4748|consen 313 PNGAPGY-------GYEEGDLVVHFAGCYV 335 (364)
T ss_pred CCCCCCC-------ccccCCeEEEeccccc
Confidence 4444211 2345789999877643
No 27
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=67.38 E-value=32 Score=33.75 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=60.2
Q ss_pred HHHhhhc-c-CCeE-EEEEeCcchHHHHHHHHHHhhhc---CCcccEEEEEecHHHHHHHhccCCCcE--EecCCCCCcc
Q 018302 84 QAASFVA-K-NGTI-IVCAVSQPYLPFLNNWLISISRQ---KHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPPAPDSQ 155 (358)
Q Consensus 84 ~ll~~~A-~-~~tV-Ivt~~N~~~~~~~~Nwl~sl~~~---g~~~~vlVvAlD~~a~~~~~~~~pg~~--v~~~~~~~~~ 155 (358)
++|...- + |=|| +++++-..|..|++.|++|.++. |..-++.|.+-+.+..-.+. ..|+.. |+.-
T Consensus 88 ~~l~~~y~~~n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~-l~~~r~~~V~~v------ 160 (337)
T PF03414_consen 88 DILNEYYKQQNITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIE-LGPGRRLKVFEV------ 160 (337)
T ss_dssp HHHHHHHHHCT-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-------TTEEEEEEE-------
T ss_pred HHHHHHHHhcCceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccc-cCCCceeEEEEe------
Confidence 3444443 2 3333 45557788999999999999885 77667778883333222221 223322 2221
Q ss_pred cccccCchhHHHHHhhHHHHHHHHHH----cCCc-EEEeecceeeecCCc
Q 018302 156 TAHKFGSQGFFNFTSRRPCHLLHILE----LGYN-VMYNDVDMVWLKDPF 200 (358)
Q Consensus 156 ~~~~~gs~~f~~~~~~K~~~l~~lL~----~Gy~-Vl~sDvDvVWlrdPl 200 (358)
-....|..++.+|..++.+.++ ..+| +.+.|+|+++ +|++
T Consensus 161 ----~~~~~Wqd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F-~~~v 205 (337)
T PF03414_consen 161 ----QEEKRWQDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVF-QDHV 205 (337)
T ss_dssp ----SGGSSHHHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE--S-B
T ss_pred ----cccCCCccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEE-eccc
Confidence 1234677888889888887654 3455 7788999997 5654
No 28
>PLN02718 Probable galacturonosyltransferase
Probab=65.82 E-value=21 Score=37.77 Aligned_cols=145 Identities=12% Similarity=-0.008 Sum_probs=69.8
Q ss_pred HHhhHHHHHHHHHHcCCcEEEeecceeeecCCcccccCCC-c-ee-eecCCccc----CCCCCC--CCCC---CCCCCCC
Q 018302 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDH-D-VY-FTDDMAAV----KPLDHS--HDLP---PPGKKGR 235 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~~~-D-v~-~s~D~~~~----~~~~~~--~~~p---~~g~~~~ 235 (358)
.+..|..+- +++..=-.|+|.|+|||..+|.-+.+.-+- + +. +-.|+... ..++.. ...| ..-....
T Consensus 404 ~~y~Rl~ip-ellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~ 482 (603)
T PLN02718 404 LNHARFYLP-DIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKA 482 (603)
T ss_pred HHHHHHHHH-HHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCc
Confidence 344454443 344432269999999999999876654321 1 21 22333210 000000 0000 0000113
Q ss_pred cccceeEEEE-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHH---HHHhhcCCccEEEeccCCCcCCCceee
Q 018302 236 TYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN---WALNKTAGQVDLYLLPQSAFPTGGLYF 307 (358)
Q Consensus 236 ~~iNsGf~~~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN---~ll~~~~~~l~v~~Lp~~~FpsG~~yf 307 (358)
.+.|+|++.+ |-..-+.. +..|++.-.. ...+||.++| .++.+ ++..||...=-.|..|.
T Consensus 483 CyfNsGVlLIDLk~WReenITe~-~~~~l~~n~~------~~l~dqdaLpp~LlvF~g-----ri~~LD~rWNv~gLG~~ 550 (603)
T PLN02718 483 CTWAFGMNLFDLEEWRRQKLTSV-YHKYLQLGVK------RPLWKAGSLPIGWLTFYN-----QTVALDKRWHVLGLGHE 550 (603)
T ss_pred cccccceEEEeHHHHHhcChHHH-HHHHHHhccC------ccccCcccccHHHHHhcC-----ceeecChHHhccCcccc
Confidence 4678999988 44444433 4445544221 3678999887 44432 35556543211121121
Q ss_pred ecchhhhhcCCceEEEEeCC
Q 018302 308 KNQTWVEETKGKHVIIHNNY 327 (358)
Q Consensus 308 ~~~~~~~~~~~~p~~VH~n~ 327 (358)
... .......+.++|.|-
T Consensus 551 ~~i--~~~~i~~aaIIHYnG 568 (603)
T PLN02718 551 SGV--GASDIEQAAVIHYDG 568 (603)
T ss_pred ccc--cccccCCCEEEEECC
Confidence 110 123456799999775
No 29
>PLN02523 galacturonosyltransferase
Probab=65.40 E-value=27 Score=36.60 Aligned_cols=139 Identities=15% Similarity=0.033 Sum_probs=66.5
Q ss_pred HHHHHHcCCcEEEeecceeeecCCcccccCCC-c-ee-eecCCcc-----cCCCCCCCCCCCCC---CCCCcccceeEEE
Q 018302 176 LLHILELGYNVMYNDVDMVWLKDPFPYLQGDH-D-VY-FTDDMAA-----VKPLDHSHDLPPPG---KKGRTYICSCMIY 244 (358)
Q Consensus 176 l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~~~-D-v~-~s~D~~~-----~~~~~~~~~~p~~g---~~~~~~iNsGf~~ 244 (358)
+-+++..=-.|++.|.|||-.+|--+.+.-+- + +. +..|+.. ....+ .+.|... +....+.|+|+++
T Consensus 370 IPeLLP~ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln--~s~p~i~~yFNs~aC~wnsGVml 447 (559)
T PLN02523 370 LPEMYPKLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLN--FSHPLIKEKFNPKACAWAYGMNI 447 (559)
T ss_pred HHHHhcccCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhc--ccchhhhhCcCCCcccccCCcEE
Confidence 34556632259999999999999877665431 1 11 2233321 00000 0001000 0011234559998
Q ss_pred E-----ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCCCcCCCceeeecchhhhhcCCc
Q 018302 245 L-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGK 319 (358)
Q Consensus 245 ~-----R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~FpsG~~yf~~~~~~~~~~~~ 319 (358)
+ |-..-+.++ ..|.+. .+ ....+||.++|-.+--..+ ++..||...=--|-.|-.+ -..+...+
T Consensus 448 INL~~WRe~nITek~-~~w~~l-n~-----~~~l~DqdaLpp~LivF~g--ri~~LD~rWNvlglGy~~~--i~~~~i~~ 516 (559)
T PLN02523 448 FDLDAWRREKCTEQY-HYWQNL-NE-----NRTLWKLGTLPPGLITFYS--TTKPLDKSWHVLGLGYNPS--ISMDEIRN 516 (559)
T ss_pred EeHHHHHHhchHHHH-HHHHHh-cc-----ccccccccccchHHHHhcC--ceEecCchhhccCCccCCC--ccccccCC
Confidence 8 555555554 456543 22 2477999998732211111 2455554311112111111 01233457
Q ss_pred eEEEEeCC
Q 018302 320 HVIIHNNY 327 (358)
Q Consensus 320 p~~VH~n~ 327 (358)
|.++|.|-
T Consensus 517 paIIHYnG 524 (559)
T PLN02523 517 AAVIHFNG 524 (559)
T ss_pred CEEEEECC
Confidence 99999774
No 30
>PLN02769 Probable galacturonosyltransferase
Probab=59.27 E-value=59 Score=34.68 Aligned_cols=36 Identities=19% Similarity=0.004 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHcCCcEEEeecceeeecCCcccccC
Q 018302 169 TSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG 205 (358)
Q Consensus 169 ~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~~~ 205 (358)
...|.. +-+++..=-.|+|.|.|||-.+|-.+.+.-
T Consensus 439 nh~Rfy-IPELLP~LdKVLYLD~DVVVqgDLseLw~i 474 (629)
T PLN02769 439 SHSHFL-LPEIFKKLKKVVVLDDDVVVQRDLSFLWNL 474 (629)
T ss_pred HHHHHH-HHHHhhhcCeEEEEeCCEEecCcHHHHhcC
Confidence 334443 445666322699999999999998776654
No 31
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=57.48 E-value=99 Score=27.83 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=49.4
Q ss_pred cCcchHHHHHhhhccCC-eEEEEEeCcc--hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 77 WRDYTLSQAASFVAKNG-TIIVCAVSQP--YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~-tVIvt~~N~~--~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
.+.++|+|+|+.....+ .+.+=.-... ...++..-+.-+++.+..++++|.+.|.+..+.+++..|.+.
T Consensus 80 ~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~ 151 (220)
T cd08579 80 AKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIK 151 (220)
T ss_pred CcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCe
Confidence 46789999999876533 3444333322 345666777777788888899999999999999987677653
No 32
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=54.38 E-value=1.9e+02 Score=27.06 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=47.6
Q ss_pred cCcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCC
Q 018302 77 WRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg 143 (358)
..-++|+|+|+.... -.+.+=.=+.....+....+.-+++.+..++++|...|.+++.++++..|.
T Consensus 95 ~~iptL~evl~~~~~-~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~ 160 (264)
T cd08575 95 GRIPTLEEVFKAFPD-TPINIDIKSPDAEELIAAVLDLLEKYKREDRTVWGSTNPEYLRALHPENPN 160 (264)
T ss_pred CcCCcHHHHHHhCCC-CeEEEEECCCCHHHHHHHHHHHHHhccccceEEEEeCCHHHHHHHHHhCcc
Confidence 346899999987743 334444433333456777777777888888999999999999988876665
No 33
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=51.72 E-value=2.1e+02 Score=26.94 Aligned_cols=64 Identities=14% Similarity=-0.011 Sum_probs=47.3
Q ss_pred CcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCC
Q 018302 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWP 142 (358)
Q Consensus 78 ~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~p 142 (358)
..++|+|+++.... ..+.+=.=+.....+...-+.-+++.+..++++|...|.++++.+++..|
T Consensus 93 ~iPtL~evl~~~~~-~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p 156 (263)
T cd08580 93 GIPTLEQVLRAFPD-TPFILDMKSLPADPQAKAVARVLERENAWSRVRIYSTNADYQDALAPYPQ 156 (263)
T ss_pred cCccHHHHHHhhcC-CeEEEEECCCCcHHHHHHHHHHHHhcCCCCCEEEEECCHHHHHHHHhcCc
Confidence 57899999987754 33444333333335667777777888888899999999999999987766
No 34
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=51.51 E-value=15 Score=24.09 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhccC
Q 018302 37 VLNRTTLLVLLSLLVVLGVILPW 59 (358)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (358)
=++|+.|-.-+.|++|+|++...
T Consensus 13 ELNRTSLy~GlLlifvl~vLFss 35 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVLGILFSS 35 (39)
T ss_pred eechhhHHHHHHHHHHHHHHHHh
Confidence 47999998888888999988643
No 35
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=51.46 E-value=1.1e+02 Score=23.44 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhcCCcccEEEEEec--HHHHHHHhccCCCcEEecCCCCCcccccccCchhHHHHHhhHHHHHHHHHHc
Q 018302 105 LPFLNNWLISISRQKHQDQVLVIAED--YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILEL 182 (358)
Q Consensus 105 ~~~~~Nwl~sl~~~g~~~~vlVvAlD--~~a~~~~~~~~pg~~v~~~~~~~~~~~~~~gs~~f~~~~~~K~~~l~~lL~~ 182 (358)
.+++.-|+.+...+|+ ++++|+--+ +.+.+.|++ ++++.+..... .+.. ...++.+.+. +... . .
T Consensus 4 ~~~L~~wl~~~~~lG~-d~i~i~d~~s~D~t~~~l~~-~~~v~i~~~~~-------~~~~-~~~~~~~~~~-~~~~-~-~ 70 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGV-DHIYIYDDGSTDGTREILRA-LPGVGIIRWVD-------PYRD-ERRQRAWRNA-LIER-A-F 70 (97)
T ss_pred HHHHHHHHHHHHHcCC-CEEEEEECCCCccHHHHHHh-CCCcEEEEeCC-------Cccc-hHHHHHHHHH-HHHh-C-C
Confidence 3578999999999997 887666422 456666754 45655544221 1111 1111111111 1111 1 2
Q ss_pred CCc-EEEeecceeeecCC
Q 018302 183 GYN-VMYNDVDMVWLKDP 199 (358)
Q Consensus 183 Gy~-Vl~sDvDvVWlrdP 199 (358)
+.+ +++.|+|=++.-++
T Consensus 71 ~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 71 DADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEeeeEEEecCC
Confidence 444 99999998887665
No 36
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=47.71 E-value=10 Score=24.68 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc
Q 018302 37 VLNRTTLLVLLSLLVVLGVILP 58 (358)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ 58 (358)
=++|+.|-.-+.|++|+|++.+
T Consensus 11 ELNRTSLY~GLllifvl~vLFs 32 (37)
T PF02419_consen 11 ELNRTSLYWGLLLIFVLAVLFS 32 (37)
T ss_dssp E--CCHHHHHHHHHHHHHHHHH
T ss_pred chhHHhHHHHHHHHHHHHHHhh
Confidence 4799998888888889998764
No 37
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=47.13 E-value=96 Score=29.01 Aligned_cols=68 Identities=18% Similarity=0.102 Sum_probs=46.7
Q ss_pred cCcchHHHHHhhhccCCe-EEEEEeCcchHHHHHHHHHHhhhcC-CcccEEEEEecHHHHHHHhccCCCcE
Q 018302 77 WRDYTLSQAASFVAKNGT-IIVCAVSQPYLPFLNNWLISISRQK-HQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~t-VIvt~~N~~~~~~~~Nwl~sl~~~g-~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
...++|+|+|+.....+. +.+=.=+.. ..+...-+.-+++.+ ..++++|...|.++..++++..|...
T Consensus 86 ~~iptL~evl~~~~~~~~~l~iEiK~~~-~~~~~~v~~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~ 155 (258)
T cd08573 86 EKIPTLEEAVKECLENNLRMIFDVKSNS-SKLVDALKNLFKKYPGLYDKAIVCSFNPIVIYKVRKADPKIL 155 (258)
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEeCCCc-HHHHHHHHHHHHHCCCccCCEEEEECCHHHHHHHHHhCCCce
Confidence 356899999998765443 444333222 244455555556667 77899999999999999988777643
No 38
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=45.36 E-value=1.3e+02 Score=27.68 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=48.8
Q ss_pred cCcchHHHHHhhhccCCe-EEEEEeCc----chHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 77 WRDYTLSQAASFVAKNGT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~t-VIvt~~N~----~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
...++|+|+|+.....+. +.+=.-+. .+..+..--+.-+++.++.+++++...|.++++.+++. |...
T Consensus 79 ~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~~~ 151 (235)
T cd08565 79 EKIPTLEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLLERSVLTSFDPAVLTEVRKH-PGVR 151 (235)
T ss_pred CCCCCHHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCcCCEEEEECCHHHHHHHHhC-CCCc
Confidence 357899999998765443 33333222 24456666666777788888999999999999999987 7653
No 39
>CHL00038 psbL photosystem II protein L
Probab=40.81 E-value=42 Score=21.97 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcc
Q 018302 36 LVLNRTTLLVLLSLLVVLGVILP 58 (358)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (358)
-=++|+.|-.-+.|++|+|++..
T Consensus 11 VELNRTSLy~GLLlifvl~vlfs 33 (38)
T CHL00038 11 VELNRTSLYWGLLLIFVLAVLFS 33 (38)
T ss_pred cchhhhhHHHHHHHHHHHHHHHH
Confidence 34799999887888888888764
No 40
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=40.63 E-value=1.2e+02 Score=24.44 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=44.9
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhc-CCcccEEEEEecH---HHHHHHhcc---CCCcEEecCC-CCCcccccccCchhH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQ-KHQDQVLVIAEDY---ATLYKVNGR---WPGHAVLVPP-APDSQTAHKFGSQGF 165 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~-g~~~~vlVvAlD~---~a~~~~~~~---~pg~~v~~~~-~~~~~~~~~~gs~~f 165 (358)
+||+.+-|. .+.+...+.|+.+. .....++|+. |. ++.+.+++. .++..++..+ ..
T Consensus 1 Svvip~~n~--~~~l~~~l~sl~~q~~~~~eiivvd-d~s~d~~~~~~~~~~~~~~~i~~i~~~~n~------------- 64 (169)
T PF00535_consen 1 SVVIPTYNE--AEYLERTLESLLKQTDPDFEIIVVD-DGSTDETEEILEEYAESDPNIRYIRNPENL------------- 64 (169)
T ss_dssp EEEEEESS---TTTHHHHHHHHHHHSGCEEEEEEEE-CS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-------------
T ss_pred CEEEEeeCC--HHHHHHHHHHHhhccCCCEEEEEec-cccccccccccccccccccccccccccccc-------------
Confidence 477888887 45677788888777 2234444443 42 345555432 2344444321 11
Q ss_pred HHHHhhHHHHHHHHHHcCCcEEEeecceeeecCCc
Q 018302 166 FNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPF 200 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl 200 (358)
.+...+-..+.. ..|-=+++.|.|.+|..+=+
T Consensus 65 -g~~~~~n~~~~~--a~~~~i~~ld~D~~~~~~~l 96 (169)
T PF00535_consen 65 -GFSAARNRGIKH--AKGEYILFLDDDDIISPDWL 96 (169)
T ss_dssp -HHHHHHHHHHHH----SSEEEEEETTEEE-TTHH
T ss_pred -cccccccccccc--cceeEEEEeCCCceEcHHHH
Confidence 011112222222 23447999999999977733
No 41
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=40.08 E-value=1.3e+02 Score=27.28 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=48.7
Q ss_pred cCcchHHHHHhhhccCCe-EEEEEeCcc--hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 77 WRDYTLSQAASFVAKNGT-IIVCAVSQP--YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~t-VIvt~~N~~--~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
-..++|+|+++.....+. +++=.-+.. +..+....+.-+++.+..+++++.+.|.++...+++..|.+.
T Consensus 86 ~~iptL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~ 157 (230)
T cd08563 86 EKIPTLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIK 157 (230)
T ss_pred CcCCCHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCc
Confidence 356899999998765444 333333222 245666667777778878899999999999999987777653
No 42
>COG1438 ArgR Arginine repressor [Transcription]
Probab=39.74 E-value=78 Score=27.49 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=48.6
Q ss_pred chHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------cccEEEEEecHHHHHHHhc
Q 018302 80 YTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (358)
Q Consensus 80 ~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~------~~~vlVvAlD~~a~~~~~~ 139 (358)
.-|++++-++..++..||.=++-+.+..+.+.+.++..-++ .+-++|+|.|+++.+.|.+
T Consensus 79 ~~~~~~v~~vd~~~~~ivlkT~PG~A~~ia~~lD~~~~~eIlGTIaGdDTilVi~r~~~~a~~l~~ 144 (150)
T COG1438 79 RYLKDLVLSIDRNGNLIVLKTSPGAAQLIARLLDSLAKDEILGTIAGDDTILVICRSEETAKELYE 144 (150)
T ss_pred HHHHHHheeeccCCcEEEEEeCCchHHHHHHHHHhcCchhhheeeeCCCeEEEEecCchhHHHHHH
Confidence 44778888888888888888999999999999998765322 6889999999988877754
No 43
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=39.73 E-value=1.6e+02 Score=25.29 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=47.0
Q ss_pred cchHHHHHhhhccCCeEEEEEeCcc-hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 79 DYTLSQAASFVAKNGTIIVCAVSQP-YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 79 ~~~L~~ll~~~A~~~tVIvt~~N~~-~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
.++|+|+++...++-.+++=.-... ...++...+.-+++.+..+++++.+.|.+....+++..|...+
T Consensus 48 i~tL~e~l~~~~~~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~ 116 (189)
T cd08556 48 IPTLEEVLELVKGGVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPT 116 (189)
T ss_pred CCCHHHHHHhcccCcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcE
Confidence 6899999987766333333333321 1345666666677777779999999999999999877676543
No 44
>PRK14762 membrane protein; Provisional
Probab=36.04 E-value=52 Score=19.66 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 018302 45 VLLSLLVVLGVI 56 (358)
Q Consensus 45 ~~~~~~~~~~~~ 56 (358)
.++.|++|.||+
T Consensus 12 fligllvvtgvf 23 (27)
T PRK14762 12 FLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHH
Confidence 378899999987
No 45
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=35.78 E-value=3.9e+02 Score=25.42 Aligned_cols=68 Identities=10% Similarity=-0.014 Sum_probs=44.0
Q ss_pred ccCcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 76 KWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 76 ~~~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
...-++|+|+|+... +-.+.+=.=.. ...+...-+.-+++.+..++++|...|.+++..+++..|...
T Consensus 119 g~~IPtL~EvL~~~~-~~~lnIEiK~~-~~~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i~ 186 (300)
T cd08612 119 DRRIPLLEEVFEAFP-DTPINIDIKVE-NDELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNIP 186 (300)
T ss_pred CCCCCCHHHHHHhCC-CCeEEEEECCC-chHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCcc
Confidence 345689999998763 32222211111 113444455556677777899999999999999987767653
No 46
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.28 E-value=1.6e+02 Score=26.64 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=46.1
Q ss_pred cCcchHHHHHhhhccCCe-EEEEEeCc-chHHHHHHHHHHhhhc-CCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 77 WRDYTLSQAASFVAKNGT-IIVCAVSQ-PYLPFLNNWLISISRQ-KHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~t-VIvt~~N~-~~~~~~~Nwl~sl~~~-g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
...++|+|+++.....+. +++=.=.. ....+....+.-+++. +..++++|.+.|.+....+++..|.+.+
T Consensus 84 ~~iptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~ 156 (233)
T cd08582 84 EKVPTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFDAEALKRVRELAPTLET 156 (233)
T ss_pred CcCCCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcE
Confidence 346899999998766443 44333221 1233445555555666 3468999999999999999887776543
No 47
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=33.20 E-value=2.4e+02 Score=26.73 Aligned_cols=92 Identities=23% Similarity=0.209 Sum_probs=57.9
Q ss_pred EEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEec----HHHHHHHhcc-CCCcEEec-CCCCCcccccccCchhHHHH
Q 018302 95 IIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED----YATLYKVNGR-WPGHAVLV-PPAPDSQTAHKFGSQGFFNF 168 (358)
Q Consensus 95 VIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD----~~a~~~~~~~-~pg~~v~~-~~~~~~~~~~~~gs~~f~~~ 168 (358)
+-+.++|.+-.+.+.+.+.++........++| ..| ..+.+.+++. .|.+.++. .+..+. ..+++
T Consensus 5 i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv-~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~-------agg~n-- 74 (305)
T COG1216 5 ISIIIVTYNRGEDLVECLASLAAQTYPDDVIV-VVDNGSTDGSLEALKARFFPNVRLIENGENLGF-------AGGFN-- 74 (305)
T ss_pred eEEEEEecCCHHHHHHHHHHHhcCCCCCcEEE-EccCCCCCCCHHHHHhhcCCcEEEEEcCCCccc-------hhhhh--
Confidence 44455666667788999999988866445444 445 3444555555 56665554 222222 12222
Q ss_pred HhhHHHHHHHHHHcCCc-EEEeecceeeecCCcc
Q 018302 169 TSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFP 201 (358)
Q Consensus 169 ~~~K~~~l~~lL~~Gy~-Vl~sDvDvVWlrdPl~ 201 (358)
..+...++.|++ +++.+-|++.-.|=+.
T Consensus 75 -----~g~~~a~~~~~~~~l~LN~D~~~~~~~l~ 103 (305)
T COG1216 75 -----RGIKYALAKGDDYVLLLNPDTVVEPDLLE 103 (305)
T ss_pred -----HHHHHHhcCCCcEEEEEcCCeeeChhHHH
Confidence 456778889997 9999999888555444
No 48
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=31.79 E-value=2.5e+02 Score=25.77 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=44.8
Q ss_pred ccCcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 76 KWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 76 ~~~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
....++|+|+|+.+..+ ..+..=.-.. ...--+.-+++.+..+++++.+.|.+.++.+++..|.+.
T Consensus 84 ~~~iptL~evl~~~~~~-~~l~iEiK~~---~~~~~~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~ 149 (240)
T cd08566 84 DEKVPTLEEALAWAKGK-ILLNLDLKDA---DLDEVIALVKKHGALDQVIFKSYSEEQAKELRALAPEVM 149 (240)
T ss_pred CCCCCCHHHHHHhhhcC-cEEEEEECch---HHHHHHHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCE
Confidence 34678999999876554 2222222221 234444556677777899999999999999988778754
No 49
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=31.03 E-value=60 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHcCCcEEEeecceeeecC
Q 018302 170 SRRPCHLLHILELGYNVMYNDVDMVWLKD 198 (358)
Q Consensus 170 ~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrd 198 (358)
..|-.+-.+.--.|+.++|-|.|+||-.+
T Consensus 12 al~~~lryk~~va~hgflfddg~~vw~e~ 40 (111)
T PF02484_consen 12 ALRDALRYKNEVARHGFLFDDGDIVWSED 40 (111)
T ss_pred HHHHHHHHHhhccccceEecCCcEEEecC
Confidence 33433334444469999999999999764
No 50
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=30.64 E-value=75 Score=30.89 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCc-EEEeecceeeecCCcccccC-----CCceeeec----CCcc--------cCCCC-----------C
Q 018302 173 PCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQG-----DHDVYFTD----DMAA--------VKPLD-----------H 223 (358)
Q Consensus 173 ~~~l~~lL~~Gy~-Vl~sDvDvVWlrdPl~~~~~-----~~Dv~~s~----D~~~--------~~~~~-----------~ 223 (358)
++++-..+=-.|+ -++.|+-+-...||+..+.+ .+|+.++- ++.. .+.++ -
T Consensus 142 ~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~ 221 (305)
T PF04765_consen 142 PKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYK 221 (305)
T ss_pred cceeccccCCCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4555444444554 67899999999999865543 45666641 1110 00000 0
Q ss_pred CCCCCCCC--CCC--CcccceeEEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEE
Q 018302 224 SHDLPPPG--KKG--RTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDL 292 (358)
Q Consensus 224 ~~~~p~~g--~~~--~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v 292 (358)
..++|... +.+ ....-++++.=+.|+.+..|+..|-..+... ...||-.|+.++.+....+++
T Consensus 222 ~eGlp~~s~~k~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rf------s~RDQLSF~Yv~wk~~~~~~~ 288 (305)
T PF04765_consen 222 QEGLPPWSPAKLPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERF------SPRDQLSFPYVLWKLGPKFKL 288 (305)
T ss_pred HcCCCcccccccccccCCccceEEEecCCchhHHHHHHHHHHHhcC------CCcccchHHHHHHHhCCcccc
Confidence 12233320 000 1123457787777788888999999998874 568999999999887654444
No 51
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=30.29 E-value=95 Score=23.01 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------cccEEEEEecHHHHHHHhc
Q 018302 83 SQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (358)
Q Consensus 83 ~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~------~~~vlVvAlD~~a~~~~~~ 139 (358)
++.+-++...+..++.-+-.++.+.+.+.+..+..-++ .+-++|++.+++..+.+.+
T Consensus 3 ~~~v~sv~~~~~~vvikt~pG~A~~va~~iD~~~~~~I~GtIAgdDTilvi~~~~~~a~~l~~ 65 (70)
T PF02863_consen 3 KESVVSVERSDNMVVIKTLPGNAQAVAAAIDQLNLPEIFGTIAGDDTILVICRSEEDAEELEE 65 (70)
T ss_dssp HHHEEEEEEESSEEEEEESTTCHHHHHHHHHHHCGTTEEEEEEESSEEEEEESTTSHHHHHHH
T ss_pred hHhEEeEeccCCEEEEEeCCCcHHHHHHHHHhcCCcccEEEEeCCCEEEEEeCCHHHHHHHHH
Confidence 44555555544455555668888889999988755322 6888999998877766643
No 52
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.23 E-value=2.5e+02 Score=26.19 Aligned_cols=67 Identities=10% Similarity=-0.128 Sum_probs=45.3
Q ss_pred ccCcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecH-HHHHHHhccCCC
Q 018302 76 KWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY-ATLYKVNGRWPG 143 (358)
Q Consensus 76 ~~~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~-~a~~~~~~~~pg 143 (358)
...-++|+|+++.+.. +..+..=.-.....+...-+.-+++.|..++++|...|. +....|++..|.
T Consensus 104 ~~~iptL~evl~~~~~-~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~ 171 (265)
T cd08564 104 GEKIPTLEDVLVTFKD-KLKYNIELKGREVGLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPN 171 (265)
T ss_pred CccCCCHHHHHHHhcc-CcEEEEEeCCCchhHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcC
Confidence 3467899999997765 322221122222345566667777888888999999999 888888776664
No 53
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=28.65 E-value=56 Score=24.88 Aligned_cols=24 Identities=38% Similarity=0.636 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhc--cCCCCCCCC
Q 018302 43 LLVLLSLLVVLGVIL--PWTGTPGFM 66 (358)
Q Consensus 43 ~~~~~~~~~~~~~~~--~~~~~~~~~ 66 (358)
++|++|+++++.+++ -++|+|..+
T Consensus 38 l~L~LCiLvl~yai~~fkrkGtPr~l 63 (74)
T PF11857_consen 38 LVLLLCILVLIYAIFQFKRKGTPRRL 63 (74)
T ss_pred HHHHHHHHHHHHHhheeeecCCCcEE
Confidence 456777777777775 789998875
No 54
>PF09879 DUF2106: Predicted membrane protein (DUF2106); InterPro: IPR011313 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaF transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=26.86 E-value=86 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.578 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 018302 38 LNRTTLLVLLSLLVVLGVILPWTGTPGFMFPN 69 (358)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (358)
+.|..+ +++|+++++|+++|-.=.++-++|+
T Consensus 16 v~rlfa-~~l~~i~~~gl~~P~~~n~dQLYPk 46 (153)
T PF09879_consen 16 VPRLFA-LFLCLILIIGLFVPLTYNEDQLYPK 46 (153)
T ss_pred HHHHHH-HHHHHHHHHHHhCCcccCcccccCC
Confidence 466666 7999999999999876556666655
No 55
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=26.46 E-value=3.3e+02 Score=24.59 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=43.4
Q ss_pred cCcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCc
Q 018302 77 WRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~ 144 (358)
.+.++|+|+|+....+..+.+=.=.... ..--+.-+++.+..+++++...|.+++..+++..|..
T Consensus 77 ~~iPtL~evl~~~~~~~~l~iEiK~~~~---~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~ 141 (226)
T cd08568 77 ELIPTLEEVFRALPNDAIINVEIKDIDA---VEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPDA 141 (226)
T ss_pred CcCCCHHHHHHhcCCCcEEEEEECCccH---HHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCC
Confidence 4578999999876443333333322222 2333344566677789999999999999998877764
No 56
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.16 E-value=2.9e+02 Score=25.42 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=45.9
Q ss_pred cccCcchHHHHHhhhccCCeEEEEEe-CcchHHHHHHHHHHhhhcCCc------ccEEEEEecHHHHHHHhccCCCc
Q 018302 75 AKWRDYTLSQAASFVAKNGTIIVCAV-SQPYLPFLNNWLISISRQKHQ------DQVLVIAEDYATLYKVNGRWPGH 144 (358)
Q Consensus 75 ~~~~~~~L~~ll~~~A~~~tVIvt~~-N~~~~~~~~Nwl~sl~~~g~~------~~vlVvAlD~~a~~~~~~~~pg~ 144 (358)
.....++|+|+|.....+-.+.|=.- ...+..+.+..+.-+++.++. ++++|.+.|.+++..+++..|..
T Consensus 94 ~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~ 170 (256)
T cd08601 94 SGLKVPTLEEVIERYGGRANYYIETKSPDLYPGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNI 170 (256)
T ss_pred CCccCCCHHHHHHHhccCceEEEEeeCCCCCCCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCC
Confidence 34567999999997654333333222 122223555555566677765 78999999999999898766654
No 57
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.98 E-value=3.4e+02 Score=24.84 Aligned_cols=69 Identities=25% Similarity=0.228 Sum_probs=45.5
Q ss_pred cCcchHHHHHhhhccC---CeEEEE-EeCcc--------hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCc
Q 018302 77 WRDYTLSQAASFVAKN---GTIIVC-AVSQP--------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~---~tVIvt-~~N~~--------~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~ 144 (358)
...++|+|+|+.+... +..+.. .-... ...+...-+.-+++.+..+++++...|.+.+..+++..|.+
T Consensus 107 ~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~ 186 (263)
T cd08567 107 TRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDI 186 (263)
T ss_pred ccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCc
Confidence 4678999999987653 333322 11111 13355555555667787789999999999998888766654
Q ss_pred E
Q 018302 145 A 145 (358)
Q Consensus 145 ~ 145 (358)
.
T Consensus 187 ~ 187 (263)
T cd08567 187 P 187 (263)
T ss_pred c
Confidence 3
No 58
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=24.78 E-value=4.3e+02 Score=22.42 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=20.1
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCC
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQKH 120 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g~ 120 (358)
+||+.+-|.+-...+..-+.|+.....
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~ 27 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTL 27 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCC
Confidence 477788887755678888888877654
No 59
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=23.97 E-value=3.4e+02 Score=24.29 Aligned_cols=69 Identities=9% Similarity=-0.056 Sum_probs=43.4
Q ss_pred cCcchHHHHHhhhccCCeEEEEEeC---cchHHHHHHHHHHhhhcCCc-ccEEEEEecHHHHHHHhccCCCcE
Q 018302 77 WRDYTLSQAASFVAKNGTIIVCAVS---QPYLPFLNNWLISISRQKHQ-DQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~tVIvt~~N---~~~~~~~~Nwl~sl~~~g~~-~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
-..++|+|+++.....+..+..=.- .....+..-.+.-+++.+.. +++++.+.|.++...+++..|.+.
T Consensus 84 ~~iptl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~ 156 (229)
T cd08562 84 EPIPTLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHASKLLLSSFSLEALRAARRAAPELP 156 (229)
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCc
Confidence 3567999999876544432222211 11223344444445666664 889999999999999988777653
No 60
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=23.86 E-value=5.8e+02 Score=23.55 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=43.7
Q ss_pred ccCcchHHHHHhhhcc-CCeEEEEEeCcc-----hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 76 KWRDYTLSQAASFVAK-NGTIIVCAVSQP-----YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 76 ~~~~~~L~~ll~~~A~-~~tVIvt~~N~~-----~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
....++|+|+|+.+.. +..+.+=.-... ...+...-+.-+++.|+.++.+++.-+. ..+.+++..|....
T Consensus 110 ~~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~-~~~~~~~~~p~~~~ 185 (252)
T cd08574 110 NQSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQSYVNITLDTILASGIPQHQVFWLPDE-YRALVRKVAPGFQQ 185 (252)
T ss_pred CCCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHHHHHHHHHHHHHHcCCCcccEEEccHH-HHHHHHHHCCCCeE
Confidence 3457899999998875 334555443221 2346666677777778766665556554 35777776776543
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=22.51 E-value=2.6e+02 Score=25.60 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEEecCCCCCcccccccCchhHHHHHhhHHHHHHHHHHcCCc
Q 018302 106 PFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYN 185 (358)
Q Consensus 106 ~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v~~~~~~~~~~~~~~gs~~f~~~~~~K~~~l~~lL~~Gy~ 185 (358)
++.+--++-++..|+.+=++|+.-=.+.++.|++.+ +|.....|. | .+|+.+. -..++++.|+.
T Consensus 32 plIErqI~~L~e~gI~dI~IVvGYlkE~FeYLkdKy-~vtLvyN~k--------Y--~~yNn~y--Slyla~d~l~n--- 95 (231)
T COG4750 32 PLIERQIEQLREAGIDDITIVVGYLKEQFEYLKDKY-DVTLVYNPK--------Y--REYNNIY--SLYLARDFLNN--- 95 (231)
T ss_pred ccHHHHHHHHHHCCCceEEEEeeehHHHHHHHHHhc-CeEEEeCch--------H--HhhhhHH--HHHHHHHHhcc---
Confidence 366777788889999666666666788999999887 666554321 1 3344443 34556666664
Q ss_pred EEEeecceeeecCCc
Q 018302 186 VMYNDVDMVWLKDPF 200 (358)
Q Consensus 186 Vl~sDvDvVWlrdPl 200 (358)
.-..|+|++..||-|
T Consensus 96 tYiidsDnyl~kNif 110 (231)
T COG4750 96 TYIIDSDNYLTKNIF 110 (231)
T ss_pred cEEeccchHhhhhhh
Confidence 558999999999876
No 62
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.32 E-value=2.8e+02 Score=24.52 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=35.4
Q ss_pred cchHHHHHhhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhcCC----cccEEEEEecH-HHHHHH
Q 018302 79 DYTLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKH----QDQVLVIAEDY-ATLYKV 137 (358)
Q Consensus 79 ~~~L~~ll~~~A------~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~----~~~vlVvAlD~-~a~~~~ 137 (358)
-=+|+|++...+ .++.|++...+ +|.+=+..|+.++...|. ....++++.|. ++.+.+
T Consensus 107 ~GTL~El~e~~~~~qlg~~~kPiil~n~~-g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i 175 (178)
T TIGR00730 107 FGTLEELFEVLTWAQLGIHQKPIILFNVN-GHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQV 175 (178)
T ss_pred cchHHHHHHHHHHHHcCCCCCCEEEECCc-chHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHH
Confidence 357777766654 36777775444 566777888887776654 22456667563 444433
No 63
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.67 E-value=4e+02 Score=24.40 Aligned_cols=67 Identities=19% Similarity=0.055 Sum_probs=45.0
Q ss_pred cCcchHHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 77 WRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
...++|+|+++... + ..+..=.-.....+...-+.-+++.+..+++++.+.|.+.+..+.+..|.+.
T Consensus 92 ~~iptL~evl~~~~-~-~~~~ieiK~~~~~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~ 158 (249)
T cd08561 92 IRIPTLEELFEAFP-D-VRLNIEIKDDGPAAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVA 158 (249)
T ss_pred ccCCCHHHHHHhCc-C-CcEEEEECCCchhHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcc
Confidence 46799999998763 3 2222222221124555556666677778899999999999999988777543
No 64
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.35 E-value=4.4e+02 Score=21.19 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=44.3
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEecH---HHHHHHhccCCCcEEecCCCCCcccccccCchhHHHHHhhH
Q 018302 96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRR 172 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~---~a~~~~~~~~pg~~v~~~~~~~~~~~~~~gs~~f~~~~~~K 172 (358)
|+.+-|. .+.+...+.|+.+......-+++..|. ++.+.+.+..+.+.+...+. ..|. ...+
T Consensus 2 ii~~~~~--~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~-------~~g~------~~a~ 66 (166)
T cd04186 2 IIVNYNS--LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNGE-------NLGF------GAGN 66 (166)
T ss_pred EEEecCC--HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecCC-------CcCh------HHHh
Confidence 4555555 567888888888764322223444342 34444544433333332211 0111 1112
Q ss_pred HHHHHHHHHcCCcEEEeecceeeecCCcccc
Q 018302 173 PCHLLHILELGYNVMYNDVDMVWLKDPFPYL 203 (358)
Q Consensus 173 ~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~~~ 203 (358)
-..+... .|=-+++.|.|.++-.+-+..+
T Consensus 67 n~~~~~~--~~~~i~~~D~D~~~~~~~l~~~ 95 (166)
T cd04186 67 NQGIREA--KGDYVLLLNPDTVVEPGALLEL 95 (166)
T ss_pred hHHHhhC--CCCEEEEECCCcEECccHHHHH
Confidence 2222222 3445999999998855544333
No 65
>COG4037 Predicted membrane protein [Function unknown]
Probab=21.12 E-value=88 Score=26.52 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 018302 39 NRTTLLVLLSLLVVLGVILPWTGTPGFMFP 68 (358)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (358)
-|... +++++++++|.++|-.=.|+-++|
T Consensus 21 prvf~-~~Lal~~l~Gll~ph~lnp~QLYP 49 (163)
T COG4037 21 PRVFC-LLLALLALLGLLCPHSLNPEQLYP 49 (163)
T ss_pred HHHHH-HHHHHHHHHHhhCccccCHHHcCC
Confidence 34444 688999999999975434444443
No 66
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=21.05 E-value=6.6e+02 Score=24.54 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=46.6
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCcc-cEEEEE--ecHHHHH---HHhccCCCc--EEecCCCCCcccccccCchhH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQKHQD-QVLVIA--EDYATLY---KVNGRWPGH--AVLVPPAPDSQTAHKFGSQGF 165 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~-~vlVvA--lD~~a~~---~~~~~~pg~--~v~~~~~~~~~~~~~~gs~~f 165 (358)
+||+.+-|++ +.+..-++|+.+....+ .++|+. .|+.+.+ ++.+.+|+. .++..+. .. |..
T Consensus 44 SViiP~~nee--~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~-----~~--G~~-- 112 (373)
T TIGR03472 44 SVLKPLHGDE--PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDAR-----RH--GPN-- 112 (373)
T ss_pred EEEEECCCCC--hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCC-----CC--CCC--
Confidence 5777777765 45677788887776422 333322 1122333 344456653 2332211 01 111
Q ss_pred HHHHhhHHHHHHHHHH--cCCcEEEeecceeeecCCcc
Q 018302 166 FNFTSRRPCHLLHILE--LGYNVMYNDVDMVWLKDPFP 201 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~--~Gy~Vl~sDvDvVWlrdPl~ 201 (358)
.|...+...++ .|==++++|+|+++-.|-+.
T Consensus 113 -----~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~ 145 (373)
T TIGR03472 113 -----RKVSNLINMLPHARHDILVIADSDISVGPDYLR 145 (373)
T ss_pred -----hHHHHHHHHHHhccCCEEEEECCCCCcChhHHH
Confidence 14333333333 34459999999999555443
No 67
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=20.83 E-value=1.3e+02 Score=25.09 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=20.4
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHhhccCC
Q 018302 31 QRPMLLVLNRTTLLVLLSLLVVLGVILPWT 60 (358)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (358)
+-|....--|+.|+++.+|++++|.++.-.
T Consensus 45 r~P~k~i~lavvL~~fg~Lli~lg~fl~~~ 74 (124)
T KOG4753|consen 45 RHPVKEIALAVVLLVFGLLLIGLGFFLAGG 74 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 455544444555666899999999988544
No 68
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=20.79 E-value=1.3e+02 Score=30.14 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=21.7
Q ss_pred hHHHHHHHHH-HcCCcEEEeecceeeecCC
Q 018302 171 RRPCHLLHIL-ELGYNVMYNDVDMVWLKDP 199 (358)
Q Consensus 171 ~K~~~l~~lL-~~Gy~Vl~sDvDvVWlrdP 199 (358)
..+.-+.+++ +.|+.|++.|+|-+|++.|
T Consensus 151 ~~l~~~~~~~~~~g~~VIYGDTDSvfv~~~ 180 (372)
T cd05530 151 YIITSTIKKARELGLKVLYGDTDSLFLWNP 180 (372)
T ss_pred HHHHHHHHHHHHCCcEEEEEeccceEEecC
Confidence 3344444445 4799999999999999865
No 69
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=20.51 E-value=2.4e+02 Score=27.74 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=3.6
Q ss_pred cEEEEEec
Q 018302 123 QVLVIAED 130 (358)
Q Consensus 123 ~vlVvAlD 130 (358)
+++|++.+
T Consensus 196 rvii~~~~ 203 (387)
T cd06386 196 RVVIMCAG 203 (387)
T ss_pred cEEEEecC
Confidence 44444444
No 70
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.50 E-value=1.2e+02 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 018302 40 RTTLLVLLSLLVVLGVILP 58 (358)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~ 58 (358)
|.+-+++-++++++|+++.
T Consensus 15 rigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 6666688899999999864
No 71
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.47 E-value=3.7e+02 Score=25.64 Aligned_cols=69 Identities=10% Similarity=-0.054 Sum_probs=46.9
Q ss_pred cCcchHHHHHhhhccCCeEEEEEeCcc--------------hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCC
Q 018302 77 WRDYTLSQAASFVAKNGTIIVCAVSQP--------------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWP 142 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~tVIvt~~N~~--------------~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~p 142 (358)
-..++|+|+|+.+..+-.+.|=.-... +..+...-+.-+++.+..+++++...|.+++..+++..|
T Consensus 121 ~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p 200 (293)
T cd08572 121 DPFPTLQEVLEQVPKDLGFNIEIKYPQLLEDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQN 200 (293)
T ss_pred cCCCCHHHHHHhCCCccceEEEEecCCccccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCc
Confidence 357899999997754322333222211 124666667777777877899999999999999987656
Q ss_pred CcE
Q 018302 143 GHA 145 (358)
Q Consensus 143 g~~ 145 (358)
...
T Consensus 201 ~~~ 203 (293)
T cd08572 201 KYP 203 (293)
T ss_pred cCC
Confidence 543
No 72
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=20.45 E-value=5.6e+02 Score=22.11 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=33.3
Q ss_pred ccCcchHHHHHhhhccC-----CeEEEEEeCcc----hHHHHHHHHHHhhhcC---CcccEEEEE
Q 018302 76 KWRDYTLSQAASFVAKN-----GTIIVCAVSQP----YLPFLNNWLISISRQK---HQDQVLVIA 128 (358)
Q Consensus 76 ~~~~~~L~~ll~~~A~~-----~tVIvt~~N~~----~~~~~~Nwl~sl~~~g---~~~~vlVvA 128 (358)
....++|+|+|+.+... ..+++..=-+. +.++....+.-+++.+ ..+++++..
T Consensus 56 ~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~s 120 (179)
T cd08555 56 GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSS 120 (179)
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEe
Confidence 44678999999887652 45555543332 3456666666677666 556665544
No 73
>PRK11204 N-glycosyltransferase; Provisional
Probab=20.36 E-value=6.7e+02 Score=24.69 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCcc-cEEEEEec---HHHHHHHh---ccCCCcEEec-CCCCCcccccccCchhH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQKHQD-QVLVIAED---YATLYKVN---GRWPGHAVLV-PPAPDSQTAHKFGSQGF 165 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~-~vlVvAlD---~~a~~~~~---~~~pg~~v~~-~~~~~~~~~~~~gs~~f 165 (358)
+|++.+-|+. +.+..-++|+.+....+ .++|+ -| +++.+.++ +.+|.+.+.. .+.. |
T Consensus 57 sViIp~yne~--~~i~~~l~sl~~q~yp~~eiiVv-dD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~--------G---- 121 (420)
T PRK11204 57 SILVPCYNEG--ENVEETISHLLALRYPNYEVIAI-NDGSSDNTGEILDRLAAQIPRLRVIHLAENQ--------G---- 121 (420)
T ss_pred EEEEecCCCH--HHHHHHHHHHHhCCCCCeEEEEE-ECCCCccHHHHHHHHHHhCCcEEEEEcCCCC--------C----
Confidence 4555555554 56778888887765432 33443 23 23444443 3355554443 2211 1
Q ss_pred HHHHhhHHHHHHHHHH--cCCcEEEeecceeeecCCcccc
Q 018302 166 FNFTSRRPCHLLHILE--LGYNVMYNDVDMVWLKDPFPYL 203 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~--~Gy~Vl~sDvDvVWlrdPl~~~ 203 (358)
|...+...++ .|==+++.|+|.++-.|-+..+
T Consensus 122 ------ka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l 155 (420)
T PRK11204 122 ------KANALNTGAAAARSEYLVCIDGDALLDPDAAAYM 155 (420)
T ss_pred ------HHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHH
Confidence 1122222222 3445899999999866644433
Done!