Query 018302
Match_columns 358
No_of_seqs 161 out of 429
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 98.1 2.1E-05 7.2E-10 75.6 12.8 160 96-285 7-173 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 98.0 6.8E-05 2.3E-09 69.7 13.3 162 94-285 5-174 (263)
3 1g9r_A Glycosyl transferase; a 97.0 0.0045 1.5E-07 58.4 11.1 186 96-298 3-206 (311)
4 3tzt_A Glycosyl transferase fa 97.0 0.0051 1.8E-07 57.2 11.2 192 94-297 6-210 (276)
5 1o7q_A N-acetyllactosaminide a 68.5 27 0.00092 32.3 9.5 190 93-300 49-259 (289)
6 3ioh_A Histo-blood group ABO s 63.6 11 0.00036 35.1 5.8 104 84-198 47-163 (298)
7 3ks6_A Glycerophosphoryl diest 55.3 35 0.0012 30.3 7.7 70 77-146 83-157 (250)
8 3arc_L Photosystem II reaction 48.5 11 0.00036 23.6 2.0 22 37-58 11-32 (37)
9 2pz0_A Glycerophosphoryl diest 44.8 67 0.0023 28.3 7.9 70 77-146 97-169 (252)
10 4ayl_A BOGT-metal-independent 43.0 16 0.00055 33.0 3.3 90 96-198 5-103 (246)
11 1fo8_A Alpha-1,3-mannosyl-glyc 42.9 1.4E+02 0.0049 27.9 10.2 108 94-205 5-122 (343)
12 3no3_A Glycerophosphodiester p 42.0 80 0.0027 27.7 7.9 71 76-146 79-155 (238)
13 2o55_A Putative glycerophospho 40.1 65 0.0022 28.5 7.0 70 77-146 90-166 (258)
14 2l0l_A Oxidoreductase THAT cat 40.1 4.2 0.00014 23.9 -0.7 25 32-58 1-25 (27)
15 3l12_A Putative glycerophospho 37.8 1E+02 0.0035 28.2 8.2 70 77-146 124-205 (313)
16 1b4b_A Arginine repressor; cor 36.5 45 0.0016 23.8 4.3 58 82-139 2-65 (71)
17 2c0n_A A197; thermophil protei 33.4 37 0.0013 29.7 4.0 46 168-213 37-88 (203)
18 3ch0_A Glycerophosphodiester p 32.9 1.4E+02 0.0048 26.3 8.1 69 78-146 113-193 (272)
19 3bcv_A Putative glycosyltransf 32.1 2.1E+02 0.0072 23.8 8.9 90 94-201 8-103 (240)
20 2p5m_A Arginine repressor; alp 26.2 70 0.0024 23.5 4.0 56 84-139 16-77 (83)
21 2oog_A Glycerophosphoryl diest 25.8 1.5E+02 0.005 26.6 6.9 70 77-146 118-195 (287)
22 1t35_A Hypothetical protein YV 25.6 1.5E+02 0.0051 25.2 6.6 58 80-138 109-177 (191)
23 2zfz_A Arginine repressor; DNA 25.4 58 0.002 23.7 3.3 58 82-139 10-73 (79)
24 1qg8_A Protein (spore coat pol 25.1 3.1E+02 0.01 23.0 10.0 97 94-200 4-106 (255)
25 2jp3_A FXYD domain-containing 20.5 65 0.0022 23.0 2.5 20 39-58 17-36 (67)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=98.13 E-value=2.1e-05 Score=75.61 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=94.9
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHhccCCCcEEecCCCCCccccc---ccCchhHHHHH
Q 018302 96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQTAH---KFGSQGFFNFT 169 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~~~~pg~~v~~~~~~~~~~~~---~~gs~~f~~~~ 169 (358)
|+.++|..|+.-+...+.|+++.+-...++|+..| ++..+.+++. ++.+..-+..+..... ..... +...+
T Consensus 7 vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~--~~~v~~v~~l~~~~~~~~~~~~~~-~~~~t 83 (333)
T 1ll2_A 7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIV--FDEVITVDILDSGDSAHLTLMKRP-ELGVT 83 (333)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH--CSEEEECCTTSTTSTTHHHHHHCG-GGHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHh--CCEEEEEeecCCcchhhccccccc-chHHH
Confidence 33447899999999999999988754555555544 4555566654 3333321111111000 00111 12345
Q ss_pred hhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecC
Q 018302 170 SRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPT 248 (358)
Q Consensus 170 ~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T 248 (358)
+.|..+.. + ..| .|++.|+|++.++|+-+.|..+ .+....|. |+ ...+|+|+|.++++
T Consensus 84 ~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~---------------~~--~~~fNsGvmlin~~ 142 (333)
T 1ll2_A 84 LTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP---------------GW--PDCFNSGVFVYQPS 142 (333)
T ss_dssp HHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS---------------SS--TTSEEEEEEEECCC
T ss_pred HHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC---------------CC--CcceeeeEEEEeCC
Confidence 55655543 2 345 4999999999999998877643 22211121 11 24799999999997
Q ss_pred hhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhh
Q 018302 249 DGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK 285 (358)
Q Consensus 249 ~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~ 285 (358)
. ..++++.+.+.+.. .-...||.++|.++.+
T Consensus 143 ~---~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 143 V---ETYNQLLHVASEQG---SFDGGDQGLLNTFFNS 173 (333)
T ss_dssp H---HHHHHHHHHHHHTC---CTTSSHHHHHHHHTTT
T ss_pred H---HHHHHHHHHHHhcC---CCCCCCHHHHHHHHHh
Confidence 4 44455655554421 1345799999998864
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=98.01 E-value=6.8e-05 Score=69.72 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=96.6
Q ss_pred eEEEEE-eCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHhccCCCcEEecCCCCCccc---ccccCchhHH
Q 018302 94 TIIVCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQT---AHKFGSQGFF 166 (358)
Q Consensus 94 tVIvt~-~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~~~~pg~~v~~~~~~~~~~---~~~~gs~~f~ 166 (358)
...||. +|..|+.-+...+.|+++.+-...++|+..| ++..+.+++. ++.+..-+..+... ....+...+
T Consensus 5 ~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~--~~~vi~V~~l~~~~~~~~~~~~rp~~- 81 (263)
T 3u2u_A 5 QAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV--FDEVIMVDVLDSGDSAHLTLMKRPEL- 81 (263)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH--SSEEEECCCCCCCCHHHHHHTTCTTG-
T ss_pred eEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHc--CCeEEEeeecCCcchhhhhhhcCcch-
Confidence 334444 6888999999999999998754444454433 4556667655 45554322222210 001122222
Q ss_pred HHHhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEE
Q 018302 167 NFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYL 245 (358)
Q Consensus 167 ~~~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~ 245 (358)
..++.|..+.. ++ .| .|++.|+|++.++|.-+.|..+ .+....|. |+ ...+|+|+|.+
T Consensus 82 ~~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d~---------------~~--~~~fNsGv~li 140 (263)
T 3u2u_A 82 GVTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPDP---------------GW--PDCFNSGVFVY 140 (263)
T ss_dssp GGGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEECT---------------TS--TTSEEEEEEEE
T ss_pred hHHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEeccC---------------CC--CccccCeEEEE
Confidence 34566665543 22 46 4999999999999987777643 22222221 11 34789999999
Q ss_pred ecChhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhh
Q 018302 246 RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK 285 (358)
Q Consensus 246 R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~ 285 (358)
.++. ..+++..+.+.+.. .....||.++|.++.+
T Consensus 141 ~p~~---~~~~~l~~~~~~~~---~~~~~DQd~LN~~f~~ 174 (263)
T 3u2u_A 141 QPSV---ETYNQLLHLASEQG---SFDGGDQGILNTFFSS 174 (263)
T ss_dssp CCCH---HHHHHHHHHHHHHC---CTTSSHHHHHHHHTTT
T ss_pred cccH---HHHHHHHHHHHhcC---CCCcccHHHHHHHhcc
Confidence 9874 34444444443311 2356799999999965
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.98 E-value=0.0045 Score=58.42 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=95.2
Q ss_pred EEEEeCcchHHHHHHHHHHh-hhc-CCcccEEEEEec--HHHHHHHhccC--CCcEE-e-cCCCCCcccccccCchhHHH
Q 018302 96 IVCAVSQPYLPFLNNWLISI-SRQ-KHQDQVLVIAED--YATLYKVNGRW--PGHAV-L-VPPAPDSQTAHKFGSQGFFN 167 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl-~~~-g~~~~vlVvAlD--~~a~~~~~~~~--pg~~v-~-~~~~~~~~~~~~~gs~~f~~ 167 (358)
|+..+|..|+..+...+.|+ .+. ...-++.|++.| ++..+.+++.. .++.+ + .-+.......... ...+..
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~s~ 81 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLN-IRHISI 81 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCC-CTTCCG
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccc-cccCCH
Confidence 56679999999999999999 433 222244455544 55555555421 13322 1 1110000000000 111123
Q ss_pred HHhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCC---CceeeecCCccc--CCCCCCCCCCCCCCCCCccccee
Q 018302 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD---HDVYFTDDMAAV--KPLDHSHDLPPPGKKGRTYICSC 241 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~---~Dv~~s~D~~~~--~~~~~~~~~p~~g~~~~~~iNsG 241 (358)
.+..|..+ -+++. .+ .|++.|+|++.++|.-+.+.-+ .-+....|.... ..+....+.+ ....+.|+|
T Consensus 82 ~~y~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~----~~~~yfNsG 155 (311)
T 1g9r_A 82 TTYARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMA----DGEYYFNAG 155 (311)
T ss_dssp GGGGGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCC----TTSCCEEEE
T ss_pred HHHHHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCC----CCCceEeee
Confidence 34455544 34453 45 4999999999999987766542 223222343210 0000000111 113479999
Q ss_pred EEEEecCh----hHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccCC
Q 018302 242 MIYLRPTD----GAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQS 298 (358)
Q Consensus 242 f~~~R~T~----~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~ 298 (358)
+|.+.++. ....-+.+|.+.... .....||.++|.++.+ ++..||..
T Consensus 156 v~linl~~~r~~~~~~~~~~~~~~~~~-----~~~~~DQd~lN~~f~~-----~~~~Lp~~ 206 (311)
T 1g9r_A 156 VLLINLKKWRRHDIFKMSSEWVEQYKD-----VMQYQDQDILNGLFKG-----GVCYANSR 206 (311)
T ss_dssp EEEECHHHHTTSCHHHHHHHHHHHHTT-----TCSSHHHHHHHHHHTT-----SEEEECGG
T ss_pred eeeeeHHHHHhcchHHHHHHHHHhccC-----cCccCCcCHHHHHHcC-----CEEEcChh
Confidence 99998763 122223334433221 1345799999988754 35667753
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.96 E-value=0.0051 Score=57.18 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=90.9
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCccc--EEEEEec--HHHHHHHhcc--CCCcEEe-c-CCCCCcccccccCchhH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQ--VLVIAED--YATLYKVNGR--WPGHAVL-V-PPAPDSQTAHKFGSQGF 165 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~--vlVvAlD--~~a~~~~~~~--~pg~~v~-~-~~~~~~~~~~~~gs~~f 165 (358)
.=|+.++|..|...+..-+.|+.+.+-..+ +.|++.+ ++..+.+++. ..++.+. . -+........ .+..|
T Consensus 6 i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~ 83 (276)
T 3tzt_A 6 DALLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAK--VTDRY 83 (276)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC---------------
T ss_pred EEEEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCc--ccccc
Confidence 346788999999999999999987653223 3345433 4444445432 1244321 1 1110010000 01112
Q ss_pred HHHHhhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCC---CceeeecCCcccCCCCCCCCCCCCCCCCCccccee
Q 018302 166 FNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD---HDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSC 241 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~---~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsG 241 (358)
...+..|.. +-+++...+ .|++.|+|++.++|.-+.+.-+ .-+....|+........ ......+. ...+.|+|
T Consensus 84 s~~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~-~~~~~l~~-~~~yfNsG 160 (276)
T 3tzt_A 84 PKEMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANN-VNRIRLGT-DTDYYNSG 160 (276)
T ss_dssp CHHHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC----------------------CEEEE
T ss_pred CHHHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHH-HHHhcCCC-CCCeEEee
Confidence 233333433 234554455 5999999999999987777543 12333334321100000 00000111 12689999
Q ss_pred EEEEecChh-HHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEeccC
Q 018302 242 MIYLRPTDG-AKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQ 297 (358)
Q Consensus 242 f~~~R~T~~-t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~ 297 (358)
++.+..+.= -..+.+++.+.+.+... .-...||.++|.++.+ ++..||.
T Consensus 161 V~linl~~~R~~~~~~~~~~~~~~~~~--~~~~~DQd~LN~~f~~-----~~~~Lp~ 210 (276)
T 3tzt_A 161 LLLINLKRAREEIDPDEIFSFVEDNHM--NLLLPDQDILNAMYGD-----RIYPLDD 210 (276)
T ss_dssp EEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGG-----GEEEEEH
T ss_pred EEEEEHHHHHhhhHHHHHHHHHHhccc--cccCCChhHHHHHHhC-----CEEECCc
Confidence 999977631 11223333333433210 1245799999999864 4677775
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=68.49 E-value=27 Score=32.28 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=98.6
Q ss_pred CeEEEEEeCcchH-HHHHHHHHHhhhc---CCcccEEEEEecHHHHHHHhccCCCc--EEecCCCCCcccccccCchhHH
Q 018302 93 GTIIVCAVSQPYL-PFLNNWLISISRQ---KHQDQVLVIAEDYATLYKVNGRWPGH--AVLVPPAPDSQTAHKFGSQGFF 166 (358)
Q Consensus 93 ~tVIvt~~N~~~~-~~~~Nwl~sl~~~---g~~~~vlVvAlD~~a~~~~~~~~pg~--~v~~~~~~~~~~~~~~gs~~f~ 166 (358)
+.=++.++-..|. .|++.|++|.++. |..-++.|.+-+.+..-.+ ...|+. .|+.- .....|.
T Consensus 49 tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p~v-~l~~~r~~~V~~i----------~~~~~W~ 117 (289)
T 1o7q_A 49 TVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLI-ELGPLRSFKVFKI----------KPEKRWQ 117 (289)
T ss_dssp CEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCC-CCCTTEEEEEEEC----------CCCSSHH
T ss_pred eEEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCCcc-ccCCCCeEEEEEe----------ccccCCc
Confidence 4445556777888 8999999999885 7766778888443322111 122232 22221 1234488
Q ss_pred HHHhhHHHHHHHHHHc----CCc-EEEeecceeeecCCcccccCCCceeeecCCc-ccC-----CCCC---CCCCCCCCC
Q 018302 167 NFTSRRPCHLLHILEL----GYN-VMYNDVDMVWLKDPFPYLQGDHDVYFTDDMA-AVK-----PLDH---SHDLPPPGK 232 (358)
Q Consensus 167 ~~~~~K~~~l~~lL~~----Gy~-Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~-~~~-----~~~~---~~~~p~~g~ 232 (358)
.++.+|..++.+..+. ..| +.+.|+|+++..+--.... .|++.+--.. ... |++. +...-+.|
T Consensus 118 d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E~L--g~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp~~- 194 (289)
T 1o7q_A 118 DISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETL--GESVAQLQAWWYKADPNDFTYERRKESAAYIPFG- 194 (289)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGGGC--SSEEEEECTTTTTSCGGGSCCCCCTTSTTCCCTT-
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHHHH--HHHHHccCHHHhCCCCCCCCCCCCcCceeeecCC-
Confidence 8899999998886632 345 7788999999774322222 2333221100 000 1110 00000111
Q ss_pred CCCcccceeEEEEecChhHHHHHHHHHHHHHcCcc-ccCCCCCChHHHHHHHhhcCCccEEEeccCCCc
Q 018302 233 KGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPW-SKAKKANDQPAFNWALNKTAGQVDLYLLPQSAF 300 (358)
Q Consensus 233 ~~~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~-~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp~~~F 300 (358)
.|..+..+|++= =.+....++.+.-.+.+...-. ...+.-+|-.-+|+-+-.... . ++|++++.
T Consensus 195 eGdfYY~Ga~fG-Gt~~~vl~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf~~~KP-t--KvLSPEY~ 259 (289)
T 1o7q_A 195 EGDFYYHAAIFG-GTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKP-T--KILSPEYC 259 (289)
T ss_dssp CCSCCEEEEEEE-ECHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHSCC-S--EEECGGGS
T ss_pred CCCEEEEceeeC-CcHHHHHHHHHHHHHHHHHHHhCCeEEEecchhhhhHHHhhcCC-C--EEECHHHC
Confidence 223455555542 3345556666655544432100 112344577788887644432 2 35887655
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=63.63 E-value=11 Score=35.15 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=64.1
Q ss_pred HHHhhhc-c-CCeE-EEEEeCcchHHHHHHHHHHhhhc---CCcccEEEEEecHHHHHHHhccCCCcE--EecCCCCCcc
Q 018302 84 QAASFVA-K-NGTI-IVCAVSQPYLPFLNNWLISISRQ---KHQDQVLVIAEDYATLYKVNGRWPGHA--VLVPPAPDSQ 155 (358)
Q Consensus 84 ~ll~~~A-~-~~tV-Ivt~~N~~~~~~~~Nwl~sl~~~---g~~~~vlVvAlD~~a~~~~~~~~pg~~--v~~~~~~~~~ 155 (358)
++|...- + |=|| +++++-..|..|++.|++|.++. |..-++.|.+-+.+..-.+ ...|+.. ++.-
T Consensus 47 ~il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~vP~v-~l~~~r~~~V~~v------ 119 (298)
T 3ioh_A 47 DILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRV-TLGTGRQLSVLEV------ 119 (298)
T ss_dssp HHHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGGSCCC-CCCTTEEEEEEEC------
T ss_pred HHHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhhCCcc-ccCCCCeEEEEEe------
Confidence 4444443 2 3343 44556777888999999999885 7767888888333321111 1122322 2211
Q ss_pred cccccCchhHHHHHhhHHHHHHHHHHc----CCc-EEEeecceeeecC
Q 018302 156 TAHKFGSQGFFNFTSRRPCHLLHILEL----GYN-VMYNDVDMVWLKD 198 (358)
Q Consensus 156 ~~~~~gs~~f~~~~~~K~~~l~~lL~~----Gy~-Vl~sDvDvVWlrd 198 (358)
-....|...+.+|..++.+..+. -.| +.+.|+|+++..+
T Consensus 120 ----~~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~ 163 (298)
T 3ioh_A 120 ----RAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 163 (298)
T ss_dssp ----CCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSC
T ss_pred ----ccccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccC
Confidence 12456788888899888776653 344 7788999998664
No 7
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=55.32 E-value=35 Score=30.31 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=50.4
Q ss_pred cCcchHHHHHhhhccCCe-EEEEEeCc----chHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 77 WRDYTLSQAASFVAKNGT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~t-VIvt~~N~----~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
.+.++|+|+|+.....+. +.+=.=.. .+..+...-+.-+++.+..+++++.+.|.+++..+++..|....
T Consensus 83 ~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~SF~~~~l~~~~~~~p~~~~ 157 (250)
T 3ks6_A 83 SHPMTLEELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRPRL 157 (250)
T ss_dssp CCCEEHHHHHHHHTTCSCEEEEEECCCTTSCCCTTHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCCSCEE
T ss_pred ccCcCHHHHHHHHhccCcEEEEEeCCCcccCcchHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 467999999999875443 33333221 23456666677777888889999999999999999887776543
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=48.49 E-value=11 Score=23.59 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc
Q 018302 37 VLNRTTLLVLLSLLVVLGVILP 58 (358)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ 58 (358)
=++|+.|-.-+.|++|+||+.+
T Consensus 11 ELNRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhh
Confidence 4799999777788888888754
No 9
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=44.83 E-value=67 Score=28.33 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=48.4
Q ss_pred cCcchHHHHHhhhccCCe-EEEEEeCc--chHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 77 WRDYTLSQAASFVAKNGT-IIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~t-VIvt~~N~--~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
..-++|+|+|+.+...+. +.+=.=.. .+..+...-+.-+++.+..++++|...|.+++..+++..|...+
T Consensus 97 ~~iPtL~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~ 169 (252)
T 2pz0_A 97 ERIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKI 169 (252)
T ss_dssp CCCCBHHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTSEE
T ss_pred CcCCCHHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCCE
Confidence 356899999998765443 33333222 12345566666677778888999999999999999877776543
No 10
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=42.98 E-value=16 Score=33.02 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=53.4
Q ss_pred EEEEeCcchHHHHHHHHHHhhhc---CCc--ccEEEEEecHHHHHHHhccCCCcEEecCCCCCcccccccCchhHHHHHh
Q 018302 96 IVCAVSQPYLPFLNNWLISISRQ---KHQ--DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTS 170 (358)
Q Consensus 96 Ivt~~N~~~~~~~~Nwl~sl~~~---g~~--~~vlVvAlD~~a~~~~~~~~pg~~v~~~~~~~~~~~~~~gs~~f~~~~~ 170 (358)
+++++-..|..|++.|++|.++. |.. -++.|.+-+.+...... .. ...+... ....|...+.
T Consensus 5 l~vfA~GkY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~vp~~~-~~-~v~~~~~-----------~~~~Wqd~sm 71 (246)
T 4ayl_A 5 ILYICTGKYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKLYDEEN-NK-HIHRIKQ-----------KNLGWPDNTL 71 (246)
T ss_dssp EEEECCGGGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCCTTTTT-CT-TEEEEEC-----------CCCCTTHHHH
T ss_pred EEEEEeCcHHHHHHHHHHhHHHhccCCCccceEEEEEeCChhhCCcCC-Cc-eEEEEeC-----------CcCCCcccch
Confidence 45566677889999999999885 765 67788884333221111 11 1212111 1233455666
Q ss_pred hHHHHHHHHHH---cCCc-EEEeecceeeecC
Q 018302 171 RRPCHLLHILE---LGYN-VMYNDVDMVWLKD 198 (358)
Q Consensus 171 ~K~~~l~~lL~---~Gy~-Vl~sDvDvVWlrd 198 (358)
+|..++.+..+ .-.| +.+.|+|+++..+
T Consensus 72 ~Rm~~i~~~~~~~~~evDyLf~~dvd~~F~~~ 103 (246)
T 4ayl_A 72 KRFHIFLRIKEQLERETDYLFFFNANLLFTSP 103 (246)
T ss_dssp THHHHHHTTHHHHHHHCSEEEEECTTEEECSC
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCceeecc
Confidence 77777654422 2244 7788999999665
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=42.91 E-value=1.4e+02 Score=27.91 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=64.7
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcC--CcccEEEEEecH---HHHHHHhccCC-CcEEecCCCCC--cccccccCchhH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQK--HQDQVLVIAEDY---ATLYKVNGRWP-GHAVLVPPAPD--SQTAHKFGSQGF 165 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g--~~~~vlVvAlD~---~a~~~~~~~~p-g~~v~~~~~~~--~~~~~~~gs~~f 165 (358)
.|||.+.|.. + ++.-|+++.+.. .....+||+-|. ++.+.+++ +. .......+... ...+...|-.+|
T Consensus 5 pViI~~yNRp--~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~-~~~~I~~~~~~d~~~~~~~~~N~g~~~y 80 (343)
T 1fo8_A 5 PILVIACDRS--T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIAS-YGSAVTHIRQPDLSNIAVQPDHRKFQGY 80 (343)
T ss_dssp CEEEEESSCT--T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHT-TGGGSEEEECSCCCCCCCCTTCGGGHHH
T ss_pred cEEEEECCcH--H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHH-cCCceEEEEcCCccccccchhhcCcccc
Confidence 5888888988 4 788888888764 223457777664 44443432 10 01111111111 001222344556
Q ss_pred HHHHhhHHHHHHHHHH--cCCcEEEeecceeeecCCcccccC
Q 018302 166 FNFTSRRPCHLLHILE--LGYNVMYNDVDMVWLKDPFPYLQG 205 (358)
Q Consensus 166 ~~~~~~K~~~l~~lL~--~Gy~Vl~sDvDvVWlrdPl~~~~~ 205 (358)
.++...-...+..+.+ .+=.|++.|-|++.-.|-+.|+..
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 6666555566666666 556699999999998887888764
No 12
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=41.99 E-value=80 Score=27.67 Aligned_cols=71 Identities=15% Similarity=-0.042 Sum_probs=51.3
Q ss_pred ccCcchHHHHHhhhccC-C-eEEEEEeCcc----hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 76 KWRDYTLSQAASFVAKN-G-TIIVCAVSQP----YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 76 ~~~~~~L~~ll~~~A~~-~-tVIvt~~N~~----~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
....++|+|+|+.+... + .+.+=.=... +..+...-+.-+++.+..+++++.+.|.+++..+++..|.+.+
T Consensus 79 ~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~ 155 (238)
T 3no3_A 79 GEKLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDACKEFIRLCPKSEV 155 (238)
T ss_dssp SCBCCBHHHHHHHHHHCTTCEEEEEECCCSSHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTSCE
T ss_pred CCcCCcHHHHHHHHhhcCCceEEEEeCCCCCcchhHHHHHHHHHHHHHcCCcCCEEEEECCHHHHHHHHHHCCCCeE
Confidence 34678999999988754 3 3433333322 2346666677778888888999999999999999887777544
No 13
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=40.13 E-value=65 Score=28.47 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=49.0
Q ss_pred cCcchHHHHHhhhccC--Ce-EEEEEeCc----chHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcEE
Q 018302 77 WRDYTLSQAASFVAKN--GT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~--~t-VIvt~~N~----~~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
..-++|+|+|+.+... +. +.+=.=.. .+..+...-+.-+++.+..++++|...|.+++..+++..|...+
T Consensus 90 ~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~ 166 (258)
T 2o55_A 90 HTIPSLEELFVAIEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHMQERVDYCSFHHEALAHLKALCPDVKI 166 (258)
T ss_dssp CBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTCGGGEEEEESSHHHHHHHHHHCTTCEE
T ss_pred CccCCHHHHHHHhhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCCCCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 4678999999987753 43 33333221 12345566666777788888999999999999999877776543
No 14
>2l0l_A Oxidoreductase THAT catalyzes reoxidation of DSBA disulfide isomerase I; DSBB, membrane protein, organic solvent, folding; NMR {Escherichia coli BW2952} PDB: 2l0m_A
Probab=40.09 E-value=4.2 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=15.5
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHhhcc
Q 018302 32 RPMLLVLNRTTLLVLLSLLVVLGVILP 58 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (358)
+|+ |++-|..+ +.++++.++|.+.|
T Consensus 1 ~pL-CI~QR~a~-~~i~~~~li~~~~P 25 (27)
T 2l0l_A 1 KKL-SIYERVAL-FGVLGAALIGAIAP 25 (27)
T ss_dssp CCC-SSSSHHHH-HHHSSTTTTTTTCC
T ss_pred CCc-hHHHHHHH-HHHHHHHHHHHhcC
Confidence 356 99999665 45555555665444
No 15
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=37.83 E-value=1e+02 Score=28.16 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=50.2
Q ss_pred cCcchHHHHHhhhccC---C-eEEEEEeCcch--------HHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCc
Q 018302 77 WRDYTLSQAASFVAKN---G-TIIVCAVSQPY--------LPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~---~-tVIvt~~N~~~--------~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~ 144 (358)
...++|+|+|+.+... + .+.+=.=.... ..+...-+.-+++.+..++++|.+.|.+++..+++..|..
T Consensus 124 ~~iptL~evl~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~ 203 (313)
T 3l12_A 124 IHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVLADVRRYRMEPRTVMHSFDWALLGECRRQAPDL 203 (313)
T ss_dssp CCCCBHHHHHHHHHTTGGGCCEEEEEECCCGGGTTCHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTS
T ss_pred CcCCCHHHHHHHHHhcCCCCceEEEEEccCCccccccccHHHHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCC
Confidence 4578999999998752 3 33333333221 3566777777888888899999999999999998877765
Q ss_pred EE
Q 018302 145 AV 146 (358)
Q Consensus 145 ~v 146 (358)
.+
T Consensus 204 ~~ 205 (313)
T 3l12_A 204 PT 205 (313)
T ss_dssp CE
T ss_pred cE
Confidence 43
No 16
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=36.51 E-value=45 Score=23.79 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=42.8
Q ss_pred HHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------cccEEEEEecHHHHHHHhc
Q 018302 82 LSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (358)
Q Consensus 82 L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~------~~~vlVvAlD~~a~~~~~~ 139 (358)
+++.+-++...+..+|.-+--++...+.+.+.++..-++ .+-++|++-|++..+.+.+
T Consensus 2 ~~~~v~si~~~~n~vVikT~pG~A~~va~~iD~~~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~ 65 (71)
T 1b4b_A 2 LVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSN 65 (71)
T ss_dssp HHHHEEEEEEETTEEEEEESTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred hhHhEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEEEEEECCHHHHHHHHH
Confidence 345555555566677777888889999999998765322 6899999999888877754
No 17
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=33.39 E-value=37 Score=29.68 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHhhHHHHHHHHHH-cCCc-EEEeecceeeec-CCc---ccccCCCceeeec
Q 018302 168 FTSRRPCHLLHILE-LGYN-VMYNDVDMVWLK-DPF---PYLQGDHDVYFTD 213 (358)
Q Consensus 168 ~~~~K~~~l~~lL~-~Gy~-Vl~sDvDvVWlr-dPl---~~~~~~~Dv~~s~ 213 (358)
++..|-.++.+.|+ .||+ +++.|+|||=+. ||- ..+..++||+..+
T Consensus 37 I~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~g~DVV~Gs 88 (203)
T 2c0n_A 37 VAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNEGYDVVCGY 88 (203)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhCCCCEEEEE
Confidence 56678888888777 6886 899999965544 442 2334578987643
No 18
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=32.92 E-value=1.4e+02 Score=26.33 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=48.7
Q ss_pred CcchHHHHHhhhcc-C-Ce-EEEEEeCcc---------hHHHHHHHHHHhhhcCCcccEEEEEecHHHHHHHhccCCCcE
Q 018302 78 RDYTLSQAASFVAK-N-GT-IIVCAVSQP---------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (358)
Q Consensus 78 ~~~~L~~ll~~~A~-~-~t-VIvt~~N~~---------~~~~~~Nwl~sl~~~g~~~~vlVvAlD~~a~~~~~~~~pg~~ 145 (358)
.-++|+|+|+.+.. + +. +.+=.=+.. ...+...-+.-+++.+..++++|...|.+++..+++..|...
T Consensus 113 ~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~ 192 (272)
T 3ch0_A 113 VKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITDRFTLQSFDVRALEYMHSQYPDIK 192 (272)
T ss_dssp CCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTTBCCHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTSE
T ss_pred CCcCHHHHHHHHHHhCCCceEEEEECCCcCcccccCccHHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHHCCCCc
Confidence 57899999998864 2 33 333332222 234666677777788888899999999999999987777654
Q ss_pred E
Q 018302 146 V 146 (358)
Q Consensus 146 v 146 (358)
+
T Consensus 193 ~ 193 (272)
T 3ch0_A 193 L 193 (272)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=32.08 E-value=2.1e+02 Score=23.79 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=46.7
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHh---ccCCCcEEecCCCCCcccccccCchhHHH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVN---GRWPGHAVLVPPAPDSQTAHKFGSQGFFN 167 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~---~~~pg~~v~~~~~~~~~~~~~~gs~~f~~ 167 (358)
+||+.+-|.. +.+...+.|+.+....+.=+||.-| +.+.+.++ +..|.+.++..+.. |-
T Consensus 8 sViIp~yn~~--~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~--------G~----- 72 (240)
T 3bcv_A 8 SVIVPIYNVE--KYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNA--------GL----- 72 (240)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCC--------CH-----
T ss_pred EEEEecCCCH--HHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECCCC--------Ch-----
Confidence 4566666665 6788888998776542222333323 23444443 34566655543221 11
Q ss_pred HHhhHHHHHHHHHHcCCcEEEeecceeeecCCcc
Q 018302 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFP 201 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl~ 201 (358)
...+-..+.. ..|-=|++.|.|.+|-.+=+.
T Consensus 73 -~~a~N~g~~~--a~g~~i~~lD~Dd~~~~~~l~ 103 (240)
T 3bcv_A 73 -GMACNSGLDV--ATGEYVAFCDSDDYVDSDMYM 103 (240)
T ss_dssp -HHHHHHHHHH--CCSSEEEECCTTCCCCTTHHH
T ss_pred -HHHHHHHHHH--cCCCEEEEECCCCcCCHHHHH
Confidence 1112122221 257679999999988544343
No 20
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=26.17 E-value=70 Score=23.48 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------cccEEEEEecHHHHHHHhc
Q 018302 84 QAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (358)
Q Consensus 84 ~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~------~~~vlVvAlD~~a~~~~~~ 139 (358)
+.+-++...+..+|.=+--+++..+.+.+.++..-++ .+-++|++-|++..+.+.+
T Consensus 16 ~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~ 77 (83)
T 2p5m_A 16 DAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKN 77 (83)
T ss_dssp HHEEEEEEETTEEEEEESTTCHHHHHHHHHTTTCTTCCEEEECSSEEEEECSSHHHHHHHHH
T ss_pred HHEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHH
Confidence 3333344466677777888889999999998765322 6899999999888777754
No 21
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=25.80 E-value=1.5e+02 Score=26.64 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=47.1
Q ss_pred cCcchHHHHHhhhccCCeEEEEEeC-cchHHHHHHHHHHhhhcCC-------cccEEEEEecHHHHHHHhccCCCcEE
Q 018302 77 WRDYTLSQAASFVAKNGTIIVCAVS-QPYLPFLNNWLISISRQKH-------QDQVLVIAEDYATLYKVNGRWPGHAV 146 (358)
Q Consensus 77 ~~~~~L~~ll~~~A~~~tVIvt~~N-~~~~~~~~Nwl~sl~~~g~-------~~~vlVvAlD~~a~~~~~~~~pg~~v 146 (358)
..-++|+|+|+....+-.+.+=.=. ..+..+....+.-+++.+. .++++|.+.|.+++.++++..|...+
T Consensus 118 ~~iPtL~evL~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~ 195 (287)
T 2oog_A 118 AKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPL 195 (287)
T ss_dssp CCCCBHHHHHHHHCTTSCEEEECCCTTTSTTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCTTSCE
T ss_pred ccCCCHHHHHHhhCcCceEEEEECCCCCcchHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCCCCcE
Confidence 4568999999987543233332221 2233455666666777776 68899999999999999877676543
No 22
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=25.58 E-value=1.5e+02 Score=25.22 Aligned_cols=58 Identities=7% Similarity=0.026 Sum_probs=35.8
Q ss_pred chHHHHHhhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhcCCc----ccEEEEEecH-HHHHHHh
Q 018302 80 YTLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKHQ----DQVLVIAEDY-ATLYKVN 138 (358)
Q Consensus 80 ~~L~~ll~~~A------~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~~----~~vlVvAlD~-~a~~~~~ 138 (358)
=+|+|+....+ .++.|++.-.| +|.+=+.+|+.++...|.. .+.+.++.|. ++.+.++
T Consensus 109 GTl~El~e~lt~~q~g~~~kPvvll~~~-g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~ 177 (191)
T 1t35_A 109 GTYEELFEVLCWAQIGIHQKPIGLYNVN-GYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQ 177 (191)
T ss_dssp HHHHHHHHHHHTTSCSSCCCCEEEECGG-GTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCCCEEEecCC-cccchHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHH
Confidence 57777777664 35677765332 5667677888887776542 2346666664 4445554
No 23
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=25.44 E-value=58 Score=23.72 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHhhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------cccEEEEEecHHHHHHHhc
Q 018302 82 LSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (358)
Q Consensus 82 L~~ll~~~A~~~tVIvt~~N~~~~~~~~Nwl~sl~~~g~------~~~vlVvAlD~~a~~~~~~ 139 (358)
+++.+-++...+..+|.=+--+++..+.+.+.++..-++ .+-++|++-|++..+.+.+
T Consensus 10 ~~~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~ 73 (79)
T 2zfz_A 10 LGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAG 73 (79)
T ss_dssp HHHHCCEEEEETTEEEEECSTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred HHHHEEEEeecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHH
Confidence 334444444566777777888899999999998765322 6889999998877666653
No 24
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=25.09 E-value=3.1e+02 Score=23.04 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=47.9
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHhcc--CCCcEEecCCCCCccc-ccccCchhHHH
Q 018302 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGR--WPGHAVLVPPAPDSQT-AHKFGSQGFFN 167 (358)
Q Consensus 94 tVIvt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~~~--~pg~~v~~~~~~~~~~-~~~~gs~~f~~ 167 (358)
+||+.+-|.+ +.+...+.|+.+....+.=+||.-| +++.+.+++. .+.+.++..+...... ....|
T Consensus 4 SViIp~yn~~--~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G------ 75 (255)
T 1qg8_A 4 SVIMTSYNKS--DYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTR------ 75 (255)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCH------
T ss_pred EEEEEcCCCH--HHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccC------
Confidence 4666666765 6788888998876542222333323 4555555532 3455554432100000 00001
Q ss_pred HHhhHHHHHHHHHHcCCcEEEeecceeeecCCc
Q 018302 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKDPF 200 (358)
Q Consensus 168 ~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdPl 200 (358)
....+-..+.. ..|==+++.|.|.+|..|=+
T Consensus 76 ~~~a~N~gi~~--a~g~~i~~lD~Dd~~~~~~l 106 (255)
T 1qg8_A 76 YAALINQAIEM--AEGEYITYATDDNIYMPDRL 106 (255)
T ss_dssp HHHHHHHHHHH--CCCSEEEEEETTEEECTTHH
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCCCccChHHH
Confidence 11112222221 25666999999999954433
No 25
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.49 E-value=65 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 018302 39 NRTTLLVLLSLLVVLGVILP 58 (358)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~ 58 (358)
-|.+-+++-+++|++|+++.
T Consensus 17 LRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred heecchhhHHHHHHHHHHHH
Confidence 36666689999999999863
Done!