BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018303
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/284 (58%), Positives = 202/284 (71%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+GFLG+GIMG M+ NLLK G VTVWNRT SKCD L+ GA SP EV C T
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
AML+DP +A+ V K G + GKGY+D+STVD +TS IN I G F+E PVS
Sbjct: 83 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
GSKKPAEDGQLI LAAGDK+L+ P D++GK FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 202
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
FSEGL+ ++K GL + L++++ GA++ PM+ KGPSM +S YP AFPLKHQQKD+R
Sbjct: 203 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 262
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
LAL L + + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct: 263 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/281 (55%), Positives = 201/281 (71%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+ GF+G+GIMG+ MA+NL+KAGC VT+WNR+ K + L +LGA+ +P EV SC VTF
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
AMLADP +A +V GKHG G+G G+GYVD+STVD TS+ I + A G FLEAPVS
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
GSKKPAEDG LI LAAGD++LY+ P + MGK +LGDVG GA MKLVVNM+MG MM
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
A F EGL EK GL + +++V+ GA++ PM++LKG + + + AFPLKH QKDLR
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLR 242
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 352
LA+ L + V Q +AAANEL+K A++ G DEDFSA+ +
Sbjct: 243 LAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFK 283
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 311 bits (798), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/283 (54%), Positives = 196/283 (69%)
Query: 74 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 133
GFLG+GIMG PMA NL++AG DVTVWNR +KC PL++LGA+ SP EV A+CD+T AM
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 193
LADP +A +V G +G G+G G+GY+D+STVD +TS I + A G FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 194 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 253
KKPAEDG LI LAAGD+SL+ P +GK +LG+VG GA MKLVVNMIMG MM
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 254 FSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA 313
EG+ GLD L+EV+ GA++ PM+ KG ++ +PT+FPLKH QKDLRLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 314 LGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356
+ L + + Q AA ANE +K A++ G +DEDF+AV L+A
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA 287
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 187/282 (66%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+IGFLG+G+MG+ + NLLK G VTVWNRT KCD I GA+ +P EV ++CD+TF
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
A ++DP++A D+ G G G+ PGK YVD+STVD DT + I + G FLEAPVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G+++ + DG L+ LAAGD+ LY + MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
AT +EGL ++ G L+++++QG +++ K ++++ + F LK+ QKDLR
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
LA+ L ++V+ TP+AAAANE+YK AK+ SD D SAV A
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 313
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 1/284 (0%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
++GF+G+GI G+P A NL +AG + V D L+SLGA + +V D+ F
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIF 63
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
+ D DV G+HG A GK VD S++ +K + GA +L+APVS
Sbjct: 64 IXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVS 123
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G + A +G L G++ +++ V PL DI+GK+ +G G+G K+ +I+ +
Sbjct: 124 GGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNI 183
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
SE L+ + K G DP + + + G S+ + + G I + F + QKDL
Sbjct: 184 EAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKDLN 243
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
LAL A++++ + P A EL+ ++G S D SA ++AL+
Sbjct: 244 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALE 287
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 140/279 (50%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
++GF+G+GI G P ++NLLKAG + V +R +I+ GA+ + +A CDV
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
L + +VA G++G G PG +D S++ S+ I+ +KA G L+APVS
Sbjct: 67 TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G + A DG L GDK++++ L S + GD+G G KL +I+ +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
A SE L + K G++P+++ + + G + + K P + + + F + KDL
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLA 246
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
AL + V P+ AA E + ++ G ++D SA+
Sbjct: 247 NALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 152/284 (53%), Gaps = 5/284 (1%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+IGF+G+G MG PMA NLLK G V ++ ++ +++ GA+ + +VAA+ D+ F
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
L + V G G S G VD+S+V ++ + G +++APVS
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G K AE G L + ++++ + P+L ++GK +++GD G G A+K+V N+++G M
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNM 185
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS---MIESLYPTAFPLKHQQK 308
A+ +E L+ K GL P + E++ G S Y+++ ++ + F + Q K
Sbjct: 186 ASLAEALVLGVKCGLKPETMQEII--GKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHK 243
Query: 309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 352
DL LAL + + P+ A A ++++ ++ GL ED SAVI+
Sbjct: 244 DLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIK 287
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 9/294 (3%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
+GF+G+G MG PMA+NL+K G + +++ C G + SP +VA D
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
ML +A++ G +G + G +D ST+D SK + ++ GA F++APVSG
Sbjct: 85 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 144
Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252
A G L F+ G + + LL MG + Y G VG G A K+ NM++ M
Sbjct: 145 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 204
Query: 253 TFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIESL-----YPTAFPLK 304
+E + ++GLDP +L ++++ + S+ Y+ P +++ + Y F
Sbjct: 205 GTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDGVPSANNYQGGFGTT 263
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
KDL LA A S + + A+++Y++ + G S +DFS+V + L+ ++
Sbjct: 264 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 317
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 9/294 (3%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
+GF+G+G MG PMA+NL+K G + +++ C G + SP +VA D
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
ML +A++ G +G + G +D ST+D SK + ++ GA F++APVSG
Sbjct: 63 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 122
Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252
A G L F+ G + + LL MG + Y G VG G A K+ NM++ M
Sbjct: 123 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 182
Query: 253 TFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIESL-----YPTAFPLK 304
+E + ++GLDP +L ++++ + S+ Y+ P +++ + Y F
Sbjct: 183 GTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDGVPSANNYQGGFGTT 241
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
KDL LA A S + + A+++Y++ + G S +DFS+V + L+ ++
Sbjct: 242 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 2/287 (0%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+I FLG G G P A+ L +AG + VWNRT ++ L +LGA A D+
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
+ L + DV + G A+ PG ++D +++ ++ + A G + L+ PVS
Sbjct: 93 SXLENGAVVQDVLFAQ-GVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVS 151
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G AE G L+ A G + + PLL + G++ ++G G+G KL I+G +
Sbjct: 152 GGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLANQXIVGITI 210
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
+E LL + K G D + E ++ G + + L G +E + L Q KD R
Sbjct: 211 GAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQLKDXR 270
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
AL A+ + PI +LY HGL+D D S + L ++
Sbjct: 271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRN 317
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 4/281 (1%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+I FLG+G +GTP+A+ LL+AG ++ VWNRT SK +PL LGA + + + F
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
++LAD + ++ + +G +V ST+ +TS+ + + GA ++ AP+
Sbjct: 67 SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIF 124
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSM 250
+ +G+ + P+++ K F GD G +KL N +
Sbjct: 125 ARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACS 184
Query: 251 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLY-PTAFPLKHQQKD 309
+ E +EK G+ + E ++ +AP++ G + + Y P AF KD
Sbjct: 185 LEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKD 244
Query: 310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
+ L L A V+ P A + + G + D+ A+
Sbjct: 245 INLTLQTASDVNAPXPFADIIRNRFISGLAKGRENLDWGAL 285
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 22/291 (7%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 125
++ F+G+G MG PMA +L + VWNRT K ++Q P E A
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185
V F L +VA + + G +VD ++ + + S+ + ++ G ++
Sbjct: 55 EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 186 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 245
L+APVSG AE G L + G + V P L K ++G VG G A+K + N
Sbjct: 112 LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 246 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK 304
++ + EGLL K G+ +EV++ + S +L ++ +P F L
Sbjct: 171 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALG 230
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
KDL +A+G+ + +P+ A E+Y++AK D D +EAL+
Sbjct: 231 LLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADH---VEALR 278
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 22/291 (7%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 125
++ F+G+G G P A +L + VWNRT K ++Q P E A
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185
V F L +VA + + G +VD ++ + + S+ + ++ G ++
Sbjct: 55 EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 186 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 245
L+APVSG AE G L G + V P L K ++G VG G A+K + N
Sbjct: 112 LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 246 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK 304
++ + EGLL K G+ +EV++ + S +L ++ +P F L
Sbjct: 171 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALG 230
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
KDL +A G+ + +P+ A E+Y+ AK D D +EAL+
Sbjct: 231 LLVKDLGIAXGVLDGEKAPSPLLRLAREVYEXAKRELGPDADH---VEALR 278
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 9/287 (3%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+I F+G+G G P A NLLKAG + V++ +S D L++ GA S + DV
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
+ L + + G + + PG ++ ST+ +++ I+ + G + L+APVS
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G A G L F GD PL + G++ F+ G G G K+ N ++ +
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 184
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YPTAFPL 303
+E GL+ VL E+ S G + +Y+ P + E+ Y F
Sbjct: 185 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYSGGFXA 243
Query: 304 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
+ KDL LA A++ + STP + A LY++ G ++ DFS V
Sbjct: 244 QLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 9/287 (3%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+I F+G+G G P A NLLKAG + V++ +S D L++ GA S + DV
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
+ L + + G + + PG ++ ST+ +++ I+ + G + L+APVS
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G A G L F GD PL + G++ F+ G G G K+ N ++ +
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 183
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YPTAFPL 303
+E GL+ VL E+ S G + +Y+ P + E+ Y F
Sbjct: 184 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYSGGFXA 242
Query: 304 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
+ KDL LA A++ + STP + A LY++ G ++ DFS V
Sbjct: 243 QLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 12/269 (4%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
++G++G+G MG PMA + + VTV++ PL GA S +VAA+ +
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
+L D + +V G A PG ST+ T+ + +KA ++APVS
Sbjct: 77 TVLDDAQ-VREVVGELAGHAK---PGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
G A G+L + D+ +Y + P + G+ G G MKL NM+ +
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSY 192
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQ-GAISAPMYSLKGPSMIESLYPTAF---PLKHQ- 306
A E + +E GLD L VV A++ ++ ++ L P F P H
Sbjct: 193 AAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252
Query: 307 ---QKDLRLALGLAESVSQSTPIAAAANE 332
+KDL LAL L E+VS P+A A E
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPLARLAYE 281
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 121/269 (44%), Gaps = 2/269 (0%)
Query: 86 AQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVTFAMLADPESAMDVA 144
A++ L+AG + C L++ GA S E A D ++ + V
Sbjct: 23 ARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVL 82
Query: 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 204
G+ G A PG ST+ ++ I + A + L+APVSG A G+
Sbjct: 83 FGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTV 142
Query: 205 LAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSMMATFSEGLLHSEK 263
A+G ++ + + P+LD + + + + D G G+ +K++ ++ G +A +E + +
Sbjct: 143 XASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAAR 202
Query: 264 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 323
G+ +V +VV+ A ++ + + +++ Y + KDL L A+++
Sbjct: 203 AGIPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP 262
Query: 324 TPIAAAANELYKVAKSHGLSDEDFSAVIE 352
P+A+ A + A + G ED SAVI+
Sbjct: 263 LPLASTALNXFTSASNAGYGKEDDSAVIK 291
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 127
+IG +GM +MG +A N+ G V+V+NR++ K + +I+ G K P + E S
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEFVES- 75
Query: 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 179
L P + + G S + K Y+D +DG DT + N +
Sbjct: 76 ------LETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 232
A G +F+ VSG ++ G I + G K Y VAP+L + Y+G
Sbjct: 129 AEGFNFIGTGVSGGEEGTLKGPSI-MPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGA 187
Query: 233 VGNGAAMKLVVNMIMGSMMATFSE 256
G G +K+V N I M +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 127
+IG +GM +MG +A N+ G V+++NR++ K + +I+ G K P + E S
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 179
+ +L + G A + P Y+D +DG DT + N +
Sbjct: 77 ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 232
A G +F+ VSG ++ A G I + G K Y VAP+L + Y+G
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 233 VGNGAAMKLVVNMIMGSMMATFSE 256
G G +K+V N I M +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 127
+IG +GM +MG +A N+ G V+++NR++ K + +I+ G K P + E S
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 179
+ +L + G A + P Y+D +DG DT + N +
Sbjct: 77 ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 232
A G +F+ VSG ++ A G I + G K Y VAP+L + Y+G
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 233 VGNGAAMKLVVNMIMGSMMATFSE 256
G G +K+V N I M +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211
>pdb|3L6D|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
pdb|3L6D|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
Length = 306
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
+ +G+G GT AQ LLK G V +WNR+ K L++ GA S ++ T
Sbjct: 12 VSVIGLGAXGTIXAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIF 71
Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
+L D + +V G G A + + VD +T D + G + G +++ +
Sbjct: 72 VLLDNHATHEV-LGXPGVARALAH-RTIVDYTTNAQDEGLALQGLVNQAGGHYVKGXIVA 129
Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
+ + + GD+ + LL+ + G + F D A V++ +
Sbjct: 130 YPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWD--EALAFATVLHAHAFAAX 187
Query: 252 ATFSEGLLHSEKVGL 266
TF E + ++ GL
Sbjct: 188 VTFFEAVGAGDRFGL 202
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
G +GM +MG +A N+ G V ++NRT SK + + ++Q + +
Sbjct: 8 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK---EHQDKNLVFTKTLEEFVG 64
Query: 133 MLADPESAMDVACGKHGAASG---------MGPGKGYVDVSTVDGDTSKLINGHIKATGA 183
L P M + + GAA+ + G +D + N + +G
Sbjct: 65 SLEKPRRIMLMV--QAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 184 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKS-------RFYLGDVGN 235
+F+ VSG +K A G + + G K Y+ VAP+ + I K+ Y+G G
Sbjct: 123 NFIGTGVSGGEKGALLGPSM-MPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGA 181
Query: 236 GAAMKLVVNMIMGSMMATFSE 256
G +K+V N I M +E
Sbjct: 182 GHYVKMVHNGIEYGDMQLIAE 202
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
G +GM +MG +A N+ G V ++NRT SK + + ++Q + +
Sbjct: 7 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK---EHQDKNLVFTKTLEEFVG 63
Query: 133 MLADPESAMDVACGKHGAASG---------MGPGKGYVDVSTVDGDTSKLINGHIKATGA 183
L P M + + GAA+ + G +D + N + +G
Sbjct: 64 SLEKPRRIMLMV--QAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 121
Query: 184 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKS-------RFYLGDVGN 235
+F+ VSG +K A G + + G K Y+ VAP+ + I K+ Y+G G
Sbjct: 122 NFIGTGVSGGEKGALLGPSM-MPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGA 180
Query: 236 GAAMKLVVNMIMGSMMATFSE 256
G +K+V N I M +E
Sbjct: 181 GHYVKMVHNGIEYGDMQLIAE 201
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
G +GM +MG +A N+ G V ++NRT SK + + ++Q + +
Sbjct: 6 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK---EHQDKNLVFTKTLEEFVG 62
Query: 133 MLADPESAMDVACGKHGAASG---------MGPGKGYVDVSTVDGDTSKLINGHIKATGA 183
L P M + + GAA+ + G +D + N + +G
Sbjct: 63 SLEKPRRIMLMV--QAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 120
Query: 184 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKS-------RFYLGDVGN 235
+F+ VSG +K A G + + G K Y+ VAP+ + I K+ Y+G G
Sbjct: 121 NFIGTGVSGGEKGALLGPSM-MPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGA 179
Query: 236 GAAMKLVVNMIMGSMMATFSE 256
G +K+V N I M +E
Sbjct: 180 GHYVKMVHNGIEYGDMQLIAE 200
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 21/205 (10%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDV--TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 129
R+GF+G G + +A L G +V ++ R+ S + ++G + +E SC V
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGV--TETSEEDVYSCPV 59
Query: 130 TFAMLADPESAMDVA--CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187
+ + P A+ A G+H G+ YVD++ + +T ++ + I+ G F++
Sbjct: 60 VISAVT-PGVALGAARRAGRH--VRGI-----YVDINNISPETVRMASSLIEKGG--FVD 109
Query: 188 APVSGS-KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 246
A + GS ++ D ++I + L+I + R + G+ +A+K++ +
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAEEFMKLNRYGLNIEVRGR----EPGDASAIKMLRSSY 165
Query: 247 MGSMMATFSEGLLHSEKVGLDPNVL 271
+ A E L + ++GL+ +VL
Sbjct: 166 TKGVSALLWETLTAAHRLGLEEDVL 190
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 22/221 (9%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+IG +G+ +MG +A N+ G V V+NR + K D + + + + +
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ-----EAKGKNIVGTYSIEE 61
Query: 132 AMLADPESAMDVACGKHGAASG-----MGPGKGYVDVSTVDGDT----SKLINGHIKATG 182
+ A + + K GA + + P D+ G+T ++ N + G
Sbjct: 62 FVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELG 121
Query: 183 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNG 236
F+ VSG ++ A G I + G K + V P+ + + Y+G G G
Sbjct: 122 IHFIGTGVSGGEEGALKGPSI-MPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAG 180
Query: 237 AAMKLVVNMI-MGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276
+K+V N I G M L +G+D L EV +
Sbjct: 181 HYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFA 221
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 22/221 (9%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
+IG +G+ +MG +A N+ G V V+NR + K D + + + + +
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ-----EAKGKNIVGTYSIEE 60
Query: 132 AMLADPESAMDVACGKHGAASG-----MGPGKGYVDVSTVDGDT----SKLINGHIKATG 182
+ A + + K GA + + P D+ G+T ++ N + G
Sbjct: 61 FVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELG 120
Query: 183 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNG 236
F+ VSG ++ A G I + G K + V P+ + + Y+G G G
Sbjct: 121 IHFIGTGVSGGEEGALKGPSI-MPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAG 179
Query: 237 AAMKLVVNMI-MGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276
+K+V N I G M L +G+D L EV +
Sbjct: 180 HYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFA 220
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 61 TGVSAEDELPGR-IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 119
TG + L G+ +G LGMG +G +A+ L+ G + W+R + K + L A+Y
Sbjct: 136 TGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR-KVNVEKELKARYM-D 193
Query: 120 PDEVAASCDVTFAML 134
DE+ D+ L
Sbjct: 194 IDELLEKSDIVILAL 208
>pdb|4EZB|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
From Sinorhizobium Meliloti 1021
Length = 317
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 160 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 219
++D+++V DT L G I SF+E V P + ++ L AG +++ VA
Sbjct: 117 FIDLNSVGPDTKALAAGAIATGKGSFVEGAVXARVPPYAE-KVPILVAGRRAV--EVAER 173
Query: 220 LDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 271
L+ +G + +G+ G +++K + ++ + + A E L +E+ G+ +L
Sbjct: 174 LNALGXNLEAVGETPGQASSLKXIRSVXIKGVEALLIEALSSAERAGVTERIL 226
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 115
G +G+ +MG + N G V +NRT+SK D ++ AK
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK 55
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA--KYQPS---PDEVAASC 127
I LG G GT +A L + G V +W+ D + + G +Y P+ P+ + A C
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYC 91
Query: 128 DV 129
D+
Sbjct: 92 DL 93
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL----------ISLGAKYQPSPD 121
R+G +G G G + + ++ V+ RT + C PL SL +Y P+
Sbjct: 187 RVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRY-PTIL 245
Query: 122 EVAASCDVTFAMLADPESAMDVACGKHGA 150
E S D F DP DV+ + A
Sbjct: 246 EYVKSTDTAFPYHRDPRKGTDVSESERDA 274
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 76 LGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEVAASCDV 129
LG G + L+K G V +WNRTK K I L K+ SP+EV V
Sbjct: 129 LGAGGASRAVIYALVKEGAKVFLWNRTKEKA---IKLAQKFPLEVVNSPEEVIDKVQV 183
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 76 LGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEVAASCDV 129
LG G + L+K G V +WNRTK K I L K+ SP+EV V
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKA---IKLAQKFPLEVVNSPEEVIDKVQV 189
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNR-TKSKCDPLISLGAKYQPSPDEVAASCDV 129
RIG LG+G +G +A G V WNR T S D + SP ++A DV
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWI------AHQSPVDLARDSDV 225
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 68 ELPGR-IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS 126
+L G+ IG +G G +G + Q L GC++ +R + + GAK+ +E+
Sbjct: 167 DLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPK 226
Query: 127 CDV 129
CDV
Sbjct: 227 CDV 229
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 68 ELPGR-IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS 126
+L G+ IG +G G +G + Q L GC++ +R + + GAK+ +E+
Sbjct: 161 DLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPK 220
Query: 127 CDV 129
CDV
Sbjct: 221 CDV 223
>pdb|3RKO|L Chain L, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|B Chain B, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 613
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
Query: 228 FYLGDVGNGAA-MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS 286
FY D NGAA MK V +G + F+ +L++E L+ +VE+ AP +
Sbjct: 156 FYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVEL-------APAHF 208
Query: 287 LKGPSMIESLYPTAFPL---KHQQKDLRLALGLAESVSQSTPIAAAANE-------LYKV 336
G +M+ ++ T L + L L LA++++ TP++A + +Y +
Sbjct: 209 ADGNNML--MWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLI 266
Query: 337 AKSHGL 342
A++HGL
Sbjct: 267 ARTHGL 272
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 115
I +G+ +MG + N+ G V +NRT SK D ++ AK
Sbjct: 28 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK 70
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 115
I +G+ +MG + N+ G V +NRT SK D ++ AK
Sbjct: 7 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK 49
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 115
I +G+ +MG + N+ G V +NRT SK D ++ AK
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK 47
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 80 IMGTPMAQNLLKAGCDVTVWNR 101
I+G PMA LL GC VTV +R
Sbjct: 172 IVGRPMALELLLGGCTVTVTHR 193
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 85 MAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM-LADPESAMDV 143
+A N+ + G V V+NRT SK + + A + + A FA L P A+ +
Sbjct: 16 LALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75
Query: 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK----------ATGASFLEAPVSGS 193
S + K + + DT N H K A G FL +SG
Sbjct: 76 VQAGAATDSTIEQLKKVFEKGDILVDTG---NAHFKDQGRRAQQLEAAGLRFLGMGISGG 132
Query: 194 KKPAEDGQLIFLAAGDKSLYNTVAPLLD 221
++ A G F G S++ + P+++
Sbjct: 133 EEGARKGP-AFFPGGTLSVWEEIRPIVE 159
>pdb|1XN4|A Chain A, Putative Mar1 Ribonuclease From Leishmania Major
Length = 192
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 199 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNG--------AAMKLVVNMIMGSM 250
D ++F G + TVA LLD+ R +L G G AAMKL+ +
Sbjct: 100 DNAVVFGIEGHACILQTVADLLDM--NKRVFLPKDGLGSQKKTDFKAAMKLMGSWSPNCE 157
Query: 251 MATFSEGLLHSEKVGLDPN 269
+ T LL K +DPN
Sbjct: 158 ITTSESILLQMTKDAMDPN 176
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
+GFLGMG +G MA L G + R LG + Q + E+ AS D F
Sbjct: 148 VGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASSD--FI 204
Query: 133 MLADPESA 140
+LA P +A
Sbjct: 205 LLALPLNA 212
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
+GFLGMG +G MA L G + R LG + Q + E+ AS D F
Sbjct: 148 VGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASSD--FI 204
Query: 133 MLADPESA 140
+LA P +A
Sbjct: 205 LLALPLNA 212
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 60 ATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN 100
+TG +PG++G +G G++G + + G +VTV
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLE 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,189,117
Number of Sequences: 62578
Number of extensions: 416315
Number of successful extensions: 1202
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 65
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)